MOTIFSIM - MOTIF SIMilarity Detection Tool

Input Parameters

Number of files:	5
Number of top significant motifs:	10
Number of best matches:	10
Similarity cutoff >=	0.75
Matching motif database:	UniProbe Mus Musculus
Phylogenetic tree:	Yes
Combined similar motifs:	Yes
Output file type:	All
Output file format:	All

Input files and motif counts

File name	Count of motifs	Dataset number
MEME-ChIP_DM05.txt	4	1
MEME_DM05.txt	46	2
PScanChIP_DM05.txt	16	3
RSAT_peak-motifs_DM05.txt	17	4
W-ChIPMotifs_DM05.txt	11	5

Top 10 Significant Motifs - Global Matching (Highest to Lowest)

Dataset #: 5

Motif ID: 84

Motif name: TFW3

Original motif     Consensus sequence: GCACTG	Reverse complement motif     Consensus sequence: CAGTGC

Best Matches for Top Significant Motif ID 84 (Highest to Lowest)

Dataset #:	4
Motif ID:	67
Motif name:	TgTGgTGTCACAGTGCTCC
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	4
Number of overlap:	6
Similarity score:	0

Alignment:
GGAGCACTGTGACACCACA
----------GCACTG---

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC	Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

---

Dataset #:	4
Motif ID:	72
Motif name:	CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	14
Number of overlap:	6
Similarity score:	0.000794289

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
------CAGTGC-------------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT	Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

---

Dataset #:	4
Motif ID:	73
Motif name:	TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	5
Number of overlap:	6
Similarity score:	0.00482436

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
--------------CAGTGC----

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG	Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

---

Dataset #:	4
Motif ID:	76
Motif name:	CAcCACAGTGGAGCAct
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	7
Number of overlap:	6
Similarity score:	0.0201914

Alignment:
CAHCACAGTGGAGCACT
------CAGTGC-----

Original motif     Consensus sequence: CAHCACAGTGGAGCACT	Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

---

Dataset #:	4
Motif ID:	70
Motif name:	CagTGCTCCACTGTGgT
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	8
Number of overlap:	6
Similarity score:	0.0205497

Alignment:
ABCACAGTGGAGCACTG
----CAGTGC-------

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT	Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

---

Dataset #:	4
Motif ID:	77
Motif name:	AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	13
Number of overlap:	6
Similarity score:	0.0290883

Alignment:
ACTGTGACACCACAGTGGAGCACT
------------CAGTGC------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT	Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

---

Dataset #:	3
Motif ID:	57
Motif name:	REST
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	15
Number of overlap:	6
Similarity score:	0.039883

Alignment:
TTCAGCACCATGGACAGCKCC
-CAGTGC--------------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC	Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

---

Dataset #:	3
Motif ID:	65
Motif name:	Tcfcp2l1
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	8
Number of overlap:	6
Similarity score:	0.0447224

Alignment:
CCAGYYHVADCCRG
-------CAGTGC-

Original motif     Consensus sequence: CCAGYYHVADCCRG	Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

---

Dataset #:	2
Motif ID:	9
Motif name:	Motif 9
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	9
Number of overlap:	6
Similarity score:	0.0459818

Alignment:
GAKAGKTGGCTCWG
GCACTG--------

Original motif     Consensus sequence: CWGAGCCAYCTYTC	Reverse complement motif     Consensus sequence: GAKAGKTGGCTCWG

---

Dataset #:	4
Motif ID:	75
Motif name:	wwCCAmAGTCmt
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	6
Number of overlap:	6
Similarity score:	0.0587933

Alignment:
VDGACTRTGGDD
-----GCACTG-

Original motif     Consensus sequence: DDCCAMAGTCHB	Reverse complement motif     Consensus sequence: VDGACTRTGGDD

---

Dataset #: 5

Motif ID: 85

Motif name: TFW1

Original motif     Consensus sequence: TTGCGCAA	Reverse complement motif     Consensus sequence: TTGCGCAA

Best Matches for Top Significant Motif ID 85 (Highest to Lowest)

Dataset #:	2
Motif ID:	25
Motif name:	Motif 25
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	1
Number of overlap:	8
Similarity score:	0.0195312

Alignment:
TTYGGAAAGCAG
----TTGCGCAA

Original motif     Consensus sequence: CTGCTTTCCMAA	Reverse complement motif     Consensus sequence: TTYGGAAAGCAG

---

Dataset #:	3
Motif ID:	52
Motif name:	NR2F1
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	1
Number of overlap:	8
Similarity score:	0.0276442

Alignment:
AKGYYCAAAGRTCA
TTGCGCAA------

Original motif     Consensus sequence: TGAMCTTTGMMCYT	Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

---

Dataset #:	3
Motif ID:	64
Motif name:	PPARGRXRA
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	7
Number of overlap:	8
Similarity score:	0.0277567

Alignment:
BTRGGDCARAGGKCA
------TTGCGCAA-

Original motif     Consensus sequence: BTRGGDCARAGGKCA	Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

---

Dataset #:	2
Motif ID:	32
Motif name:	Motif 32
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	2
Number of overlap:	8
Similarity score:	0.0328125

Alignment:
TTTACTAAAT
-TTGCGCAA-

Original motif     Consensus sequence: ATTTAGTAAA	Reverse complement motif     Consensus sequence: TTTACTAAAT

---

Dataset #:	4
Motif ID:	76
Motif name:	CAcCACAGTGGAGCAct
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	2
Number of overlap:	8
Similarity score:	0.0336914

Alignment:
CAHCACAGTGGAGCACT
-TTGCGCAA--------

Original motif     Consensus sequence: CAHCACAGTGGAGCACT	Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

---

Dataset #:	4
Motif ID:	73
Motif name:	TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	17
Number of overlap:	8
Similarity score:	0.0338471

Alignment:
TGGAGCACTGTGACAVCACAGTGG
TTGCGCAA----------------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG	Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

---

Dataset #:	4
Motif ID:	77
Motif name:	AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	2
Number of overlap:	8
Similarity score:	0.034375

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
---------------TTGCGCAA-

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT	Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

---

Dataset #:	4
Motif ID:	70
Motif name:	CagTGCTCCACTGTGgT
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	3
Number of overlap:	8
Similarity score:	0.0354167

Alignment:
CAGTGCTCCACTGTGBT
-------TTGCGCAA--

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT	Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

---

Dataset #:	4
Motif ID:	72
Motif name:	CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	3
Number of overlap:	8
Similarity score:	0.0407242

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
---------------TTGCGCAA--

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT	Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

---

Dataset #:	2
Motif ID:	20
Motif name:	Motif 20
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	3
Number of overlap:	8
Similarity score:	0.0421875

Alignment:
TWTTGACAYAGA
--TTGCGCAA--

Original motif     Consensus sequence: TCTKTGTCAAWA	Reverse complement motif     Consensus sequence: TWTTGACAYAGA

---

Dataset #: 3

Motif ID: 55

Motif name: ZEB1

Original motif     Consensus sequence: CACCTD	Reverse complement motif     Consensus sequence: HAGGTG

Best Matches for Top Significant Motif ID 55 (Highest to Lowest)

Dataset #:	1
Motif ID:	1
Motif name:	Motif 1
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	6
Number of overlap:	6
Similarity score:	0

Alignment:
YGCCACCTDSTGGY
---CACCTD-----

Original motif     Consensus sequence: YGCCACCTDSTGGY	Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK

---

Dataset #:	2
Motif ID:	9
Motif name:	Motif 9
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	3
Number of overlap:	6
Similarity score:	0.00902841

Alignment:
CWGAGCCAYCTYTC
------CACCTD--

Original motif     Consensus sequence: CWGAGCCAYCTYTC	Reverse complement motif     Consensus sequence: GAKAGKTGGCTCWG

---

Dataset #:	2
Motif ID:	50
Motif name:	Motif 50
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	8
Number of overlap:	6
Similarity score:	0.0285279

Alignment:
TATKCTAAACCTAT
-CACCTD-------

Original motif     Consensus sequence: ATAGGTTTAGYATA	Reverse complement motif     Consensus sequence: TATKCTAAACCTAT

---

Dataset #:	2
Motif ID:	24
Motif name:	Motif 24
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	4
Number of overlap:	6
Similarity score:	0.0346255

Alignment:
TTCCAGGAGGA
---HAGGTG--

Original motif     Consensus sequence: TCCTCCTGGAA	Reverse complement motif     Consensus sequence: TTCCAGGAGGA

---

Dataset #:	2
Motif ID:	16
Motif name:	Motif 16
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	5
Number of overlap:	6
Similarity score:	0.0376742

Alignment:
ACAACACATTT
----CACCTD-

Original motif     Consensus sequence: ACAACACATTT	Reverse complement motif     Consensus sequence: AAATGTGTTGT

---

Dataset #:	2
Motif ID:	38
Motif name:	Motif 38
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	2
Number of overlap:	6
Similarity score:	0.0397068

Alignment:
AAAGATGA
-HAGGTG-

Original motif     Consensus sequence: AAAGATGA	Reverse complement motif     Consensus sequence: TCATCTTT

---

Dataset #:	2
Motif ID:	26
Motif name:	Motif 26
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	6
Number of overlap:	6
Similarity score:	0.0397068

Alignment:
TTTATGGTGAGCAT
-----HAGGTG---

Original motif     Consensus sequence: TTTATGGTGAGCAT	Reverse complement motif     Consensus sequence: ATGCTCACCATAAA

---

Dataset #:	2
Motif ID:	21
Motif name:	Motif 21
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	6
Number of overlap:	6
Similarity score:	0.0458043

Alignment:
CTTCTGACCTC
-----CACCTD

Original motif     Consensus sequence: CTTCTGACCTC	Reverse complement motif     Consensus sequence: GAGGTCAGAAG

---

Dataset #:	5
Motif ID:	92
Motif name:	TFM11
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	7
Number of overlap:	6
Similarity score:	0.0461561

Alignment:
CAMACACACACAYDCACACA
--------CACCTD------

Original motif     Consensus sequence: CAMACACACACAYDCACACA	Reverse complement motif     Consensus sequence: TGTGTGDKTGTGTGTGTRTG

---

Dataset #:	5
Motif ID:	89
Motif name:	TFM1
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	7
Number of overlap:	6
Similarity score:	0.0467843

Alignment:
CACACACACACWCACACA
------CACCTD------

Original motif     Consensus sequence: CACACACACACWCACACA	Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG

---

Dataset #: 2

Motif ID: 7

Motif name: Motif 7

Original motif     Consensus sequence: HCAGRRVACASAG	Reverse complement motif     Consensus sequence: CTSTGTBKMCTGH

Best Matches for Top Significant Motif ID 7 (Highest to Lowest)

Dataset #:	5
Motif ID:	93
Motif name:	TFM12
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	7
Number of overlap:	13
Similarity score:	0.00926418

Alignment:
RAGKGMAGVRRGSRCASAGV
------HCAGRRVACASAG-

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV	Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

---

Dataset #:	3
Motif ID:	53
Motif name:	ESR1
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	4
Number of overlap:	13
Similarity score:	0.0328703

Alignment:
VDBHMAGGTCACCCTGACCY
---HCAGRRVACASAG----

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY	Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

---

Dataset #:	4
Motif ID:	72
Motif name:	CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	3
Number of overlap:	13
Similarity score:	0.0400966

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
----------HCAGRRVACASAG--

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT	Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

---

Dataset #:	5
Motif ID:	90
Motif name:	TFM2
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	3
Number of overlap:	13
Similarity score:	0.0435274

Alignment:
GCAGAKGSAGGABDGHDG
--HCAGRRVACASAG---

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC	Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

---

Dataset #:	3
Motif ID:	66
Motif name:	CTCF
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	7
Number of overlap:	13
Similarity score:	0.0448341

Alignment:
YDRCCASYAGRKGGCRSYV
------HCAGRRVACASAG

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV	Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

---

Dataset #:	4
Motif ID:	73
Motif name:	TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	4
Number of overlap:	13
Similarity score:	0.045698

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
---CTSTGTBKMCTGH--------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG	Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

---

Dataset #:	3
Motif ID:	64
Motif name:	PPARGRXRA
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	1
Number of overlap:	13
Similarity score:	0.0457253

Alignment:
BTRGGDCARAGGKCA
HCAGRRVACASAG--

Original motif     Consensus sequence: BTRGGDCARAGGKCA	Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

---

Dataset #:	3
Motif ID:	65
Motif name:	Tcfcp2l1
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	2
Number of overlap:	13
Similarity score:	0.0477557

Alignment:
CKGGDTBDMMCTGG
CTSTGTBKMCTGH-

Original motif     Consensus sequence: CCAGYYHVADCCRG	Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

---

Dataset #:	5
Motif ID:	94
Motif name:	TFM13
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	4
Number of overlap:	13
Similarity score:	0.0478998

Alignment:
WHAATTAAARAARAAAAAAA
----HCAGRRVACASAG---

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW	Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

---

Dataset #:	5
Motif ID:	88
Motif name:	TFF11
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	2
Number of overlap:	13
Similarity score:	0.048132

Alignment:
HVCDBBDBCAGCAG
-HCAGRRVACASAG

Original motif     Consensus sequence: CTGCTGBDBBDGBD	Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

---

Dataset #: 1

Motif ID: 2

Motif name: Motif 2

Original motif     Consensus sequence: GCARRGGSAGS	Reverse complement motif     Consensus sequence: SCTSCCKMTGC

Best Matches for Top Significant Motif ID 2 (Highest to Lowest)

Dataset #:	2
Motif ID:	5
Motif name:	Motif 5
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	1
Number of overlap:	11
Similarity score:	0

Alignment:
CYTSCCTCTGC
SCTSCCKMTGC

Original motif     Consensus sequence: CYTSCCTCTGC	Reverse complement motif     Consensus sequence: GCAGAGGSAKG

---

Dataset #:	5
Motif ID:	90
Motif name:	TFM2
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	1
Number of overlap:	11
Similarity score:	0.000952693

Alignment:
GCAGAKGSAGGABDGHDG
GCARRGGSAGS-------

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC	Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

---

Dataset #:	3
Motif ID:	66
Motif name:	CTCF
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	3
Number of overlap:	11
Similarity score:	0.033658

Alignment:
YDRCCASYAGRKGGCRSYV
------GCARRGGSAGS--

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV	Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

---

Dataset #:	5
Motif ID:	88
Motif name:	TFF11
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	3
Number of overlap:	11
Similarity score:	0.0410341

Alignment:
CTGCTGBDBBDGBD
--SCTSCCKMTGC-

Original motif     Consensus sequence: CTGCTGBDBBDGBD	Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

---

Dataset #:	5
Motif ID:	93
Motif name:	TFM12
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	6
Number of overlap:	11
Similarity score:	0.0422459

Alignment:
RAGKGMAGVRRGSRCASAGV
----GCARRGGSAGS-----

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV	Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

---

Dataset #:	3
Motif ID:	65
Motif name:	Tcfcp2l1
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	1
Number of overlap:	11
Similarity score:	0.0533531

Alignment:
CCAGYYHVADCCRG
SCTSCCKMTGC---

Original motif     Consensus sequence: CCAGYYHVADCCRG	Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

---

Dataset #:	3
Motif ID:	57
Motif name:	REST
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	4
Number of overlap:	11
Similarity score:	0.0578944

Alignment:
GGYGCTGTCCATGGTGCTGAA
---SCTSCCKMTGC-------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC	Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

---

Dataset #:	3
Motif ID:	53
Motif name:	ESR1
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	3
Number of overlap:	11
Similarity score:	0.0620615

Alignment:
VDBHMAGGTCACCCTGACCY
--GCARRGGSAGS-------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY	Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

---

Dataset #:	2
Motif ID:	7
Motif name:	Motif 7
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	1
Number of overlap:	11
Similarity score:	0.0627554

Alignment:
HCAGRRVACASAG
GCARRGGSAGS--

Original motif     Consensus sequence: HCAGRRVACASAG	Reverse complement motif     Consensus sequence: CTSTGTBKMCTGH

---

Dataset #:	3
Motif ID:	59
Motif name:	ESR2
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	5
Number of overlap:	11
Similarity score:	0.0646979

Alignment:
VHRGGTCABDBTGMCCTB
---SCTSCCKMTGC----

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB	Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

---

Dataset #: 5

Motif ID: 87

Motif name: TFF1

Original motif     Consensus sequence: AGGACAAAGAVV	Reverse complement motif     Consensus sequence: VVTCTTTGTCCT

Best Matches for Top Significant Motif ID 87 (Highest to Lowest)

Dataset #:	3
Motif ID:	51
Motif name:	HNF4A
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	2
Number of overlap:	12
Similarity score:	0.0111472

Alignment:
TGMYCTTTGBCCK
-VVTCTTTGTCCT

Original motif     Consensus sequence: RGGBCAAAGKYCA	Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

---

Dataset #:	3
Motif ID:	64
Motif name:	PPARGRXRA
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	3
Number of overlap:	12
Similarity score:	0.0210867

Alignment:
BTRGGDCARAGGKCA
--AGGACAAAGAVV-

Original motif     Consensus sequence: BTRGGDCARAGGKCA	Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

---

Dataset #:	3
Motif ID:	59
Motif name:	ESR2
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	5
Number of overlap:	12
Similarity score:	0.0351633

Alignment:
BAGGYCABHBTGACCKHV
----VVTCTTTGTCCT--

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB	Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

---

Dataset #:	3
Motif ID:	53
Motif name:	ESR1
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	9
Number of overlap:	12
Similarity score:	0.039773

Alignment:
VDBHMAGGTCACCCTGACCY
VVTCTTTGTCCT--------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY	Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

---

Dataset #:	3
Motif ID:	52
Motif name:	NR2F1
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	2
Number of overlap:	12
Similarity score:	0.0472374

Alignment:
AKGYYCAAAGRTCA
-AGGACAAAGAVV-

Original motif     Consensus sequence: TGAMCTTTGMMCYT	Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

---

Dataset #:	3
Motif ID:	60
Motif name:	NR1H2RXRA
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	3
Number of overlap:	12
Similarity score:	0.0472884

Alignment:
GTTGACCTTTGACCTTT
---VVTCTTTGTCCT--

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC	Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

---

Dataset #:	4
Motif ID:	72
Motif name:	CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	7
Number of overlap:	12
Similarity score:	0.0530556

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
-------AGGACAAAGAVV------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT	Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

---

Dataset #:	4
Motif ID:	73
Motif name:	TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	13
Number of overlap:	12
Similarity score:	0.0539204

Alignment:
TGGAGCACTGTGACAVCACAGTGG
------------AGGACAAAGAVV

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG	Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

---

Dataset #:	3
Motif ID:	57
Motif name:	REST
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	7
Number of overlap:	12
Similarity score:	0.0558379

Alignment:
TTCAGCACCATGGACAGCKCC
---AGGACAAAGAVV------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC	Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

---

Dataset #:	4
Motif ID:	77
Motif name:	AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	7
Number of overlap:	12
Similarity score:	0.0609269

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
------VVTCTTTGTCCT------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT	Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

---

Dataset #: 2

Motif ID: 41

Motif name: Motif 41

Original motif     Consensus sequence: ACTTTGG	Reverse complement motif     Consensus sequence: CCAAAGT

Best Matches for Top Significant Motif ID 41 (Highest to Lowest)

Dataset #:	4
Motif ID:	69
Motif name:	atactttggc
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	2
Number of overlap:	7
Similarity score:	0

Alignment:
GCCAAAGTAT
-CCAAAGT--

Original motif     Consensus sequence: ATACTTTGGC	Reverse complement motif     Consensus sequence: GCCAAAGTAT

---

Dataset #:	4
Motif ID:	75
Motif name:	wwCCAmAGTCmt
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	4
Number of overlap:	7
Similarity score:	0.0275974

Alignment:
DDCCAMAGTCHB
--CCAAAGT---

Original motif     Consensus sequence: DDCCAMAGTCHB	Reverse complement motif     Consensus sequence: VDGACTRTGGDD

---

Dataset #:	4
Motif ID:	77
Motif name:	AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	10
Number of overlap:	7
Similarity score:	0.056841

Alignment:
ACTGTGACACCACAGTGGAGCACT
---------CCAAAGT--------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT	Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

---

Dataset #:	4
Motif ID:	71
Motif name:	AmTGTGACACCACAGT
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	1
Number of overlap:	7
Similarity score:	0.0597098

Alignment:
ACTGTGGTGTCACART
ACTTTGG---------

Original motif     Consensus sequence: AMTGTGACACCACAGT	Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

---

Dataset #:	4
Motif ID:	76
Motif name:	CAcCACAGTGGAGCAct
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	3
Number of overlap:	7
Similarity score:	0.061942

Alignment:
AGTGCTCCACTGTGDTG
--------ACTTTGG--

Original motif     Consensus sequence: CAHCACAGTGGAGCACT	Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

---

Dataset #:	4
Motif ID:	70
Motif name:	CagTGCTCCACTGTGgT
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	2
Number of overlap:	7
Similarity score:	0.0625

Alignment:
ABCACAGTGGAGCACTG
-CCAAAGT---------

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT	Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

---

Dataset #:	3
Motif ID:	52
Motif name:	NR2F1
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	4
Number of overlap:	7
Similarity score:	0.0686813

Alignment:
TGAMCTTTGMMCYT
---ACTTTGG----

Original motif     Consensus sequence: TGAMCTTTGMMCYT	Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

---

Dataset #:	4
Motif ID:	72
Motif name:	CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	2
Number of overlap:	7
Similarity score:	0.0714286

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
-ACTTTGG-----------------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT	Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

---

Dataset #:	4
Motif ID:	73
Motif name:	TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	3
Number of overlap:	7
Similarity score:	0.0714286

Alignment:
TGGAGCACTGTGACAVCACAGTGG
---------------CCAAAGT--

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG	Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

---

Dataset #:	3
Motif ID:	60
Motif name:	NR1H2RXRA
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	6
Number of overlap:	7
Similarity score:	0.0728571

Alignment:
GTTGACCTTTGACCTTT
-----ACTTTGG-----

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC	Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

---

Dataset #: 1

Motif ID: 4

Motif name: Motif 4

Original motif     Consensus sequence: GGAAM	Reverse complement motif     Consensus sequence: YTTCC

Best Matches for Top Significant Motif ID 4 (Highest to Lowest)

Dataset #:	2
Motif ID:	25
Motif name:	Motif 25
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	5
Number of overlap:	5
Similarity score:	0.01875

Alignment:
CTGCTTTCCMAA
----YTTCC---

Original motif     Consensus sequence: CTGCTTTCCMAA	Reverse complement motif     Consensus sequence: TTYGGAAAGCAG

---

Dataset #:	2
Motif ID:	45
Motif name:	Motif 45
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	5
Number of overlap:	5
Similarity score:	0.01875

Alignment:
TGGAGGAAA
----GGAAM

Original motif     Consensus sequence: TGGAGGAAA	Reverse complement motif     Consensus sequence: TTTCCTCCA

---

Dataset #:	2
Motif ID:	47
Motif name:	Motif 47
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	5
Number of overlap:	5
Similarity score:	0.04375

Alignment:
TGCCTTTCYTT
----YTTCC--

Original motif     Consensus sequence: AAKGAAAGGCA	Reverse complement motif     Consensus sequence: TGCCTTTCYTT

---

Dataset #:	2
Motif ID:	48
Motif name:	Motif 48
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	3
Number of overlap:	5
Similarity score:	0.05625

Alignment:
TTCTTYCATT
--YTTCC---

Original motif     Consensus sequence: AATGKAAGAA	Reverse complement motif     Consensus sequence: TTCTTYCATT

---

Dataset #:	2
Motif ID:	32
Motif name:	Motif 32
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	1
Number of overlap:	5
Similarity score:	0.06875

Alignment:
TTTACTAAAT
YTTCC-----

Original motif     Consensus sequence: ATTTAGTAAA	Reverse complement motif     Consensus sequence: TTTACTAAAT

---

Dataset #:	2
Motif ID:	12
Motif name:	Motif 12
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	7
Number of overlap:	5
Similarity score:	0.06875

Alignment:
TGAAAATSCTT
GGAAM------

Original motif     Consensus sequence: TGAAAATSCTT	Reverse complement motif     Consensus sequence: AAGSATTTTCA

---

Dataset #:	2
Motif ID:	13
Motif name:	Motif 13
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	8
Number of overlap:	5
Similarity score:	0.06875

Alignment:
TGAAAATATGTT
GGAAM-------

Original motif     Consensus sequence: AACATATTTTCA	Reverse complement motif     Consensus sequence: TGAAAATATGTT

---

Dataset #:	2
Motif ID:	23
Motif name:	Motif 23
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	2
Number of overlap:	5
Similarity score:	0.06875

Alignment:
CTTTCTCT
-YTTCC--

Original motif     Consensus sequence: AGAGAAAG	Reverse complement motif     Consensus sequence: CTTTCTCT

---

Dataset #:	3
Motif ID:	57
Motif name:	REST
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	12
Number of overlap:	5
Similarity score:	0.0747947

Alignment:
GGYGCTGTCCATGGTGCTGAA
-----YTTCC-----------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC	Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

---

Dataset #:	2
Motif ID:	27
Motif name:	Motif 27
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	6
Number of overlap:	5
Similarity score:	0.075

Alignment:
ATGTWTTCATTMAT
----YTTCC-----

Original motif     Consensus sequence: ATGTWTTCATTMAT	Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

---

Dataset #: 3

Motif ID: 61

Motif name: NR4A2

Original motif     Consensus sequence: AAGGTCAC	Reverse complement motif     Consensus sequence: GTGACCTT

Best Matches for Top Significant Motif ID 61 (Highest to Lowest)

Dataset #:	2
Motif ID:	21
Motif name:	Motif 21
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	1
Number of overlap:	8
Similarity score:	0.0393171

Alignment:
CTTCTGACCTC
GTGACCTT---

Original motif     Consensus sequence: CTTCTGACCTC	Reverse complement motif     Consensus sequence: GAGGTCAGAAG

---

Dataset #:	2
Motif ID:	19
Motif name:	Motif 19
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	2
Number of overlap:	8
Similarity score:	0.040519

Alignment:
AAAGRTMAAACTA
-AAGGTCAC----

Original motif     Consensus sequence: AAAGRTMAAACTA	Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

---

Dataset #:	2
Motif ID:	28
Motif name:	Motif 28
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	4
Number of overlap:	8
Similarity score:	0.0539119

Alignment:
TTWATGWCTTT
---GTGACCTT

Original motif     Consensus sequence: AAAGWCATWAA	Reverse complement motif     Consensus sequence: TTWATGWCTTT

---

Dataset #:	4
Motif ID:	72
Motif name:	CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	7
Number of overlap:	8
Similarity score:	0.0557243

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
------AAGGTCAC-----------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT	Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

---

Dataset #:	2
Motif ID:	39
Motif name:	Motif 39
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	2
Number of overlap:	8
Similarity score:	0.0566591

Alignment:
AGATGYTCTTG
-GTGACCTT--

Original motif     Consensus sequence: AGATGYTCTTG	Reverse complement motif     Consensus sequence: CAAGAKCATCT

---

Dataset #:	5
Motif ID:	93
Motif name:	TFM12
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	10
Number of overlap:	8
Similarity score:	0.0584971

Alignment:
RAGKGMAGVRRGSRCASAGV
---------AAGGTCAC---

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV	Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

---

Dataset #:	4
Motif ID:	73
Motif name:	TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	8
Number of overlap:	8
Similarity score:	0.060729

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
-------AAGGTCAC---------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG	Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

---

Dataset #:	4
Motif ID:	71
Motif name:	AmTGTGACACCACAGT
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	4
Number of overlap:	8
Similarity score:	0.0645146

Alignment:
ACTGTGGTGTCACART
-----AAGGTCAC---

Original motif     Consensus sequence: AMTGTGACACCACAGT	Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

---

Dataset #:	2
Motif ID:	26
Motif name:	Motif 26
Matching format of first motif:	Original Motif
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	7
Number of overlap:	8
Similarity score:	0.0664462

Alignment:
ATGCTCACCATAAA
------AAGGTCAC

Original motif     Consensus sequence: TTTATGGTGAGCAT	Reverse complement motif     Consensus sequence: ATGCTCACCATAAA

---

Dataset #:	2
Motif ID:	22
Motif name:	Motif 22
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Forward
Position number:	2
Number of overlap:	8
Similarity score:	0.0674765

Alignment:
GCTGGACTTTG
-GTGACCTT--

Original motif     Consensus sequence: CAAAGTCCAGC	Reverse complement motif     Consensus sequence: GCTGGACTTTG

---

Dataset #: 4

Motif ID: 79

Motif name: cCGCGGrCACG

Original motif     Consensus sequence: CCGCGGRCACG	Reverse complement motif     Consensus sequence: CGTGKCCGCGG

Best Matches for Top Significant Motif ID 79 (Highest to Lowest)

Dataset #:	5
Motif ID:	88
Motif name:	TFF11
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	1
Number of overlap:	11
Similarity score:	0.0478408

Alignment:
HVCDBBDBCAGCAG
---CGTGKCCGCGG

Original motif     Consensus sequence: CTGCTGBDBBDGBD	Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

---

Dataset #:	3
Motif ID:	57
Motif name:	REST
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	4
Number of overlap:	11
Similarity score:	0.0484441

Alignment:
TTCAGCACCATGGACAGCKCC
-------CCGCGGRCACG---

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC	Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

---

Dataset #:	3
Motif ID:	53
Motif name:	ESR1
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	3
Number of overlap:	11
Similarity score:	0.0486581

Alignment:
MGGTCAGGGTGACCTRDBHV
-------CGTGKCCGCGG--

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY	Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

---

Dataset #:	3
Motif ID:	66
Motif name:	CTCF
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	8
Number of overlap:	11
Similarity score:	0.0588663

Alignment:
YDRCCASYAGRKGGCRSYV
-------CCGCGGRCACG-

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV	Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

---

Dataset #:	2
Motif ID:	7
Motif name:	Motif 7
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Forward
Position number:	2
Number of overlap:	11
Similarity score:	0.0597806

Alignment:
HCAGRRVACASAG
-CCGCGGRCACG-

Original motif     Consensus sequence: HCAGRRVACASAG	Reverse complement motif     Consensus sequence: CTSTGTBKMCTGH

---

Dataset #:	2
Motif ID:	6
Motif name:	Motif 6
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	3
Number of overlap:	11
Similarity score:	0.0624268

Alignment:
GTGTGTGTGTGTGT
-CGTGKCCGCGG--

Original motif     Consensus sequence: ACACACACACACAC	Reverse complement motif     Consensus sequence: GTGTGTGTGTGTGT

---

Dataset #:	5
Motif ID:	93
Motif name:	TFM12
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	5
Number of overlap:	11
Similarity score:	0.0625015

Alignment:
RAGKGMAGVRRGSRCASAGV
-----CCGCGGRCACG----

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV	Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

---

Dataset #:	5
Motif ID:	89
Motif name:	TFM1
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	3
Number of overlap:	11
Similarity score:	0.0628056

Alignment:
CACACACACACWCACACA
-----CCGCGGRCACG--

Original motif     Consensus sequence: CACACACACACWCACACA	Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG

---

Dataset #:	3
Motif ID:	64
Motif name:	PPARGRXRA
Matching format of first motif:	Reverse Complement
Matching format of second motif:	Reverse Complement
Direction:	Backward
Position number:	2
Number of overlap:	11
Similarity score:	0.0629476

Alignment:
TGRCCTKTGHCCKAB
---CGTGKCCGCGG-

Original motif     Consensus sequence: BTRGGDCARAGGKCA	Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

---

Dataset #:	5
Motif ID:	92
Motif name:	TFM11
Matching format of first motif:	Original Motif
Matching format of second motif:	Original Motif
Direction:	Backward
Position number:	3
Number of overlap:	11
Similarity score:	0.0634175

Alignment:
CAMACACACACAYDCACACA
-------CCGCGGRCACG--

Original motif     Consensus sequence: CAMACACACACAYDCACACA	Reverse complement motif     Consensus sequence: TGTGTGDKTGTGTGTGTRTG

---