MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.1

INPUT

Input Parameters
Number of files: 5
Number of top significant motifs: 10
Number of best matches: 10
Similarity cutoff >= 0.75
Matching motif database: UniProbe Mus Musculus
Phylogenetic tree: Yes
Combined similar motifs: Yes
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
MEME-ChIP_DM05.txt 4 1
MEME_DM05.txt 46 2
PScanChIP_DM05.txt 16 3
RSAT_peak-motifs_DM05.txt 17 4
W-ChIPMotifs_DM05.txt 11 5

RESULTS

Best Matches in Database for Each Motif (Highest to Lowest)

Dataset #: 1 Motif ID: 1 Motif name: Motif 1

Original motif Reverse complement motif
Consensus sequence: YGCCACCTDSTGGY Consensus sequence: KCCASDAGGTGGCK

Best Matches for Motif ID 1 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 14
Similarity score: 0.0145956

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
---KCCASDAGGTGGCK------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0188184

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
------YGCCACCTDSTGGY--

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 14
Similarity score: 0.0231104

Alignment:
HGDHVHKGACCACCCGGBGBGDB
-------YGCCACCTDSTGGY--

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00022
Motif name: Zfp740_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.025419

Alignment:
DDDTWCCCCCCGGDRVH
---YGCCACCTDSTGGY

Original motif Reverse complement motif
Consensus sequence: DDDTWCCCCCCGGDRVH Consensus sequence: HVKDCCGGGGGGWADDD


Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0278794

Alignment:
HDGHHBHRGACCACCCGSVDVG
--------YGCCACCTDSTGGY

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH


Motif ID: UP00006
Motif name: Zic3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0283962

Alignment:
BMCCCCCGGGGGGGB
YGCCACCTDSTGGY-

Original motif Reverse complement motif
Consensus sequence: BMCCCCCGGGGGGGB Consensus sequence: VCCCCCCCGGGGGRB


Motif ID: UP00102
Motif name: Zic1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0287857

Alignment:
BHCCCCCGGGGGGG
YGCCACCTDSTGGY

Original motif Reverse complement motif
Consensus sequence: BHCCCCCGGGGGGG Consensus sequence: CCCCCCCGGGGGHB


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0289988

Alignment:
MHHHWHYTMCCHCCCACVAABVH
-------YGCCACCTDSTGGY--

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 14
Similarity score: 0.0297857

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
---KCCASDAGGTGGCK------

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00057
Motif name: Zic2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0302183

Alignment:
BMCCCCCGGGGGGGB
YGCCACCTDSTGGY-

Original motif Reverse complement motif
Consensus sequence: BMCCCCCGGGGGGGB Consensus sequence: VCCCCCCCGGGGGRB


Dataset #: 1 Motif ID: 2 Motif name: Motif 2

Original motif Reverse complement motif
Consensus sequence: GCARRGGSAGS Consensus sequence: SCTSCCKMTGC

Best Matches for Motif ID 2 (Highest to Lowest)

Motif ID: UP00153
Motif name: Pitx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.0454693

Alignment:
HHDRTTAATCCCKHBVH
------SCTSCCKMTGC

Original motif Reverse complement motif
Consensus sequence: HBVDRGGGATTAAMDHH Consensus sequence: HHDRTTAATCCCKHBVH


Motif ID: UP00085
Motif name: Sfpi1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0458219

Alignment:
BDAWGVGGAAGTDH
GCARRGGSAGS---

Original motif Reverse complement motif
Consensus sequence: BDAWGVGGAAGTDH Consensus sequence: HDACTTCCBCWTDV


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 11
Similarity score: 0.0463674

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
-------SCTSCCKMTGC----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.0465857

Alignment:
BADHBDHCGCCCMCGCAHHDBBV
-----SCTSCCKMTGC-------

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0473355

Alignment:
BBYVVCAGCTGCBVHHD
-SCTSCCKMTGC-----

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB


Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0487126

Alignment:
VHYTCCDWCCGCGTCMMTHWHV
-SCTSCCKMTGC----------

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV


Motif ID: UP00010
Motif name: Tcfap2b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0497623

Alignment:
HHKGCCYSRGGCWAD
----GCARRGGSAGS

Original motif Reverse complement motif
Consensus sequence: DTWGCCKSMGGCRHH Consensus sequence: HHKGCCYSRGGCWAD


Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0507547

Alignment:
DVMHHDHKGACCCTCCTSVCBH
-----------SCTSCCKMTGC

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH


Motif ID: UP00055
Motif name: Hbp1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0508648

Alignment:
HBTHVACAATGGGMDHD
-----GCARRGGSAGS-

Original motif Reverse complement motif
Consensus sequence: DDDYCCCATTGTVHABH Consensus sequence: HBTHVACAATGGGMDHD


Motif ID: UP00005
Motif name: Tcfap2a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0512938

Alignment:
WDHSCCYSRGGSRAD
----GCARRGGSAGS

Original motif Reverse complement motif
Consensus sequence: WDHSCCYSRGGSRAD Consensus sequence: DTMSCCKSMGGSHDW


Dataset #: 1 Motif ID: 3 Motif name: Motif 3

Original motif Reverse complement motif
Consensus sequence: AAAAAAAAAAAAAT Consensus sequence: ATTTTTTTTTTTTT

Best Matches for Motif ID 3 (Highest to Lowest)

Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0361736

Alignment:
HHHTTRTTDTTTKDH
ATTTTTTTTTTTTT-

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH


Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0391439

Alignment:
DWAATRTAAACAAWVVB
-AAAAAAAAAAAAAT--

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD


Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0416036

Alignment:
VBDDAAAAAAAAMVBHH
--AAAAAAAAAAAAAT-

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV


Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0420875

Alignment:
BDVTTTKTTTACWTWHH
--ATTTTTTTTTTTTT-

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH


Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0424132

Alignment:
HDHHTTTTATTKKHDD
--ATTTTTTTTTTTTT

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD


Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0424666

Alignment:
HDTYTTGTTWTKDDDT
-ATTTTTTTTTTTTT-

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT


Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0430608

Alignment:
BBVTTTGTTTACATTDD
--ATTTTTTTTTTTTT-

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD


Motif ID: UP00134
Motif name: Hoxb13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0435537

Alignment:
VDHWTTTTATTGGDKB
--ATTTTTTTTTTTTT

Original motif Reverse complement motif
Consensus sequence: VRHCCAATAAAAWHHV Consensus sequence: VDHWTTTTATTGGDKB


Motif ID: UP00025
Motif name: Foxk1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.043907

Alignment:
HDDTGTTKTTKTHHD
ATTTTTTTTTTTTT-

Original motif Reverse complement motif
Consensus sequence: HHHAYAAYAACAHHH Consensus sequence: HDDTGTTKTTKTHHD


Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.045165

Alignment:
HDHADGTAAACAAAVVH
-AAAAAAAAAAAAAT--

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH


Dataset #: 1 Motif ID: 4 Motif name: Motif 4

Original motif Reverse complement motif
Consensus sequence: GGAAM Consensus sequence: YTTCC

Best Matches for Motif ID 4 (Highest to Lowest)

Motif ID: UP00424
Motif name: Gm4881
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0

Alignment:
DHDACCGGAAMTHBVB
------GGAAM-----

Original motif Reverse complement motif
Consensus sequence: VBBHAYTTCCGGTDDD Consensus sequence: DHDACCGGAAMTHBVB


Motif ID: UP00416
Motif name: Fli1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.00163794

Alignment:
VBBVAYTTCCGGTDDH
-----YTTCC------

Original motif Reverse complement motif
Consensus sequence: VBBVAYTTCCGGTDDH Consensus sequence: DHDACCGGAAKTBBVV


Motif ID: UP00422
Motif name: Etv3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.00234412

Alignment:
VBBHAYTTCCGGTHDH
-----YTTCC------

Original motif Reverse complement motif
Consensus sequence: VBBHAYTTCCGGTHDH Consensus sequence: DHHACCGGAAKTHBBB


Motif ID: UP00411
Motif name: Erg
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.00589761

Alignment:
VBBVAYTTCCGGTDDB
-----YTTCC------

Original motif Reverse complement motif
Consensus sequence: VBBVAYTTCCGGTDDB Consensus sequence: BDDACCGGAAKTVBVB


Motif ID: UP00418
Motif name: Etv6
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 5
Similarity score: 0.00691345

Alignment:
DVHBTACTTCCGGHTHB
------YTTCC------

Original motif Reverse complement motif
Consensus sequence: DVHBTACTTCCGGHTHB Consensus sequence: BHAHCCGGAAGTABDVD


Motif ID: UP00415
Motif name: Elk4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.00722176

Alignment:
VBBHRYTTCCGGTDDH
-----YTTCC------

Original motif Reverse complement motif
Consensus sequence: VBBHRYTTCCGGTDDH Consensus sequence: DHDACCGGAAKKHBVB


Motif ID: UP00413
Motif name: Elf4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 5
Similarity score: 0.0153114

Alignment:
DBBHACTTCCGGKWTH
-----YTTCC------

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGKWTH Consensus sequence: HAWYCCGGAAGTHBBD


Motif ID: UP00404
Motif name: Elf2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 5
Similarity score: 0.0153458

Alignment:
DBBHACTTCCGGDWDB
-----YTTCC------

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGDWDB Consensus sequence: BDWDCCGGAAGTHBBD


Motif ID: UP00417
Motif name: Etv4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 5
Similarity score: 0.0219684

Alignment:
VBBHAYWTCCGGTDDB
-----YTTCC------

Original motif Reverse complement motif
Consensus sequence: VBBHAYWTCCGGTDDB Consensus sequence: BHHACCGGAWKTHBVV


Motif ID: UP00419
Motif name: Spic
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 5
Similarity score: 0.0224017

Alignment:
DWACTTCCRCTTTB
---YTTCC------

Original motif Reverse complement motif
Consensus sequence: VAAAGMGGAAGTWD Consensus sequence: DWACTTCCRCTTTB


Dataset #: 2 Motif ID: 5 Motif name: Motif 5

Original motif Reverse complement motif
Consensus sequence: CYTSCCTCTGC Consensus sequence: GCAGAGGSAKG

Best Matches for Motif ID 5 (Highest to Lowest)

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0313012

Alignment:
HBBBCCGCCCCWHHHV
---CYTSCCTCTGC--

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH


Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0317134

Alignment:
BHHBHCCGCCCCDHHHH
----CYTSCCTCTGC--

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV


Motif ID: UP00013
Motif name: Gabpa_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0322746

Alignment:
CYDBYWTCCSMHBVVH
----CYTSCCTCTGC-

Original motif Reverse complement motif
Consensus sequence: CYDBYWTCCSMHBVVH Consensus sequence: DBVVDRSGGAWKVHKG


Motif ID: UP00010
Motif name: Tcfap2b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0336419

Alignment:
HHKGCCYSRGGCWAD
CYTSCCTCTGC----

Original motif Reverse complement motif
Consensus sequence: DTWGCCKSMGGCRHH Consensus sequence: HHKGCCYSRGGCWAD


Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0343277

Alignment:
HHDVVGCAGCTGVBKVB
-----GCAGAGGSAKG-

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB


Motif ID: UP00096
Motif name: Sox13_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.0359879

Alignment:
DHHTHCCCACCCAHDDH
------CYTSCCTCTGC

Original motif Reverse complement motif
Consensus sequence: DDDHTGGGTGGGHAHHD Consensus sequence: DHHTHCCCACCCAHDDH


Motif ID: UP00085
Motif name: Sfpi1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.036078

Alignment:
HDACTTCCBCWTDV
---CYTSCCTCTGC

Original motif Reverse complement motif
Consensus sequence: BDAWGVGGAAGTDH Consensus sequence: HDACTTCCBCWTDV


Motif ID: UP00031
Motif name: Zbtb3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0369028

Alignment:
DDHHTBCCAGTGABHG
--CYTSCCTCTGC---

Original motif Reverse complement motif
Consensus sequence: CHVTCACTGGBADHDD Consensus sequence: DDHHTBCCAGTGABHG


Motif ID: UP00052
Motif name: Osr2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0370849

Alignment:
VDWRKAKGTAGCHHDT
-GCAGAGGSAKG----

Original motif Reverse complement motif
Consensus sequence: AHHHGCTACYTRMWHV Consensus sequence: VDWRKAKGTAGCHHDT


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0381821

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
-------CYTSCCTCTGC----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Dataset #: 2 Motif ID: 6 Motif name: Motif 6

Original motif Reverse complement motif
Consensus sequence: ACACACACACACAC Consensus sequence: GTGTGTGTGTGTGT

Best Matches for Motif ID 6 (Highest to Lowest)

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0391499

Alignment:
HBGYGTGTGTGCVRVD
GTGTGTGTGTGTGT--

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 14
Similarity score: 0.043857

Alignment:
MHHHWHYTMCCHCCCACVAABVH
---------ACACACACACACAC

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Motif ID: UP00026
Motif name: Zscan4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0468808

Alignment:
BHHHTTGTGTGCKHVD
GTGTGTGTGTGTGT--

Original motif Reverse complement motif
Consensus sequence: HVHRGCACACAAHHHV Consensus sequence: BHHHTTGTGTGCKHVD


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 14
Similarity score: 0.0479337

Alignment:
BADHBDHCGCCCMCGCAHHDBBV
------ACACACACACACAC---

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0485959

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
-GTGTGTGTGTGTGT--------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 14
Similarity score: 0.0526961

Alignment:
VYWVVHCRCCACMCACGAHSBHH
--ACACACACACACAC-------

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00036
Motif name: Myf6_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0540872

Alignment:
VVVRACAGVCBCDCC
ACACACACACACAC-

Original motif Reverse complement motif
Consensus sequence: VVVRACAGVCBCDCC Consensus sequence: GGDGBGVCTGTKVVB


Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 14
Similarity score: 0.0550075

Alignment:
DDRMHBACGCGYGCGTDGBBDB
ACACACACACACAC--------

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD


Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.055413

Alignment:
BBBDVVRGACCACCCAVGABBAB
---------ACACACACACACAC

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB


Motif ID: UP00096
Motif name: Sox13_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0582564

Alignment:
DDDHTGGGTGGGHAHHD
ACACACACACACAC---

Original motif Reverse complement motif
Consensus sequence: DDDHTGGGTGGGHAHHD Consensus sequence: DHHTHCCCACCCAHDDH


Dataset #: 2 Motif ID: 7 Motif name: Motif 7

Original motif Reverse complement motif
Consensus sequence: HCAGRRVACASAG Consensus sequence: CTSTGTBKMCTGH

Best Matches for Motif ID 7 (Highest to Lowest)

Motif ID: UP00028
Motif name: Tcfap2e_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0445121

Alignment:
HDCDBRAAAAAADD
-HCAGRRVACASAG

Original motif Reverse complement motif
Consensus sequence: HDCDBRAAAAAADD Consensus sequence: DDTTTTTTMBDGDH


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 13
Similarity score: 0.0448793

Alignment:
GTVBDAATTGTVTGHGDDHKVB
---------CTSTGTBKMCTGH

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0454552

Alignment:
DDDHTTTGTTTAMHDH
---CTSTGTBKMCTGH

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH


Motif ID: UP00016
Motif name: Sry_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0481412

Alignment:
HHDHDRAACAATDDVHV
HCAGRRVACASAG----

Original motif Reverse complement motif
Consensus sequence: HHDHDRAACAATDDVHV Consensus sequence: VHVHDATTGTTMHDDDH


Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.0545707

Alignment:
VBDDAAAAAAAAMVBHH
-HCAGRRVACASAG---

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV


Motif ID: UP00058
Motif name: Tcf3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0553073

Alignment:
DVBSBDAHAHAHAHH
-HCAGRRVACASAG-

Original motif Reverse complement motif
Consensus sequence: DVBSBDAHAHAHAHH Consensus sequence: HHTHTHTHTDBSBVD


Motif ID: UP00091
Motif name: Sox5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0562585

Alignment:
DHDCATMATTDASDD
--HCAGRRVACASAG

Original motif Reverse complement motif
Consensus sequence: DHDCATMATTDASDD Consensus sequence: DHSTDAATYATGDHD


Motif ID: UP00012
Motif name: Bbx_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0564984

Alignment:
VHVHBTGTTAACVHWVH
--CTSTGTBKMCTGH--

Original motif Reverse complement motif
Consensus sequence: HVWHBGTTAACABHBDV Consensus sequence: VHVHBTGTTAACVHWVH


Motif ID: UP00073
Motif name: Foxa2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0571073

Alignment:
VVDAATAACAAAVVB
HCAGRRVACASAG--

Original motif Reverse complement motif
Consensus sequence: VVDAATAACAAAVVB Consensus sequence: BVVTTTGTTATTDBB


Motif ID: UP00054
Motif name: Tcf7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0574997

Alignment:
HHDTTTVTAATAYBD
CTSTGTBKMCTGH--

Original motif Reverse complement motif
Consensus sequence: HBKTATTABAAAHHH Consensus sequence: HHDTTTVTAATAYBD


Dataset #: 2 Motif ID: 8 Motif name: Motif 8

Original motif Reverse complement motif
Consensus sequence: HAAAAHAAARMAAA Consensus sequence: TTTRKTTTHTTTTH

Best Matches for Motif ID 8 (Highest to Lowest)

Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0212263

Alignment:
BBVTTTGTTTACATTDD
---TTTRKTTTHTTTTH

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD


Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0216448

Alignment:
VBDDAAAAAAAAMVBHH
---HAAAAHAAARMAAA

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV


Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0216826

Alignment:
DVVTTTGTTTACDTHDH
---TTTRKTTTHTTTTH

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH


Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0232085

Alignment:
VVVWTTGTTTAMATTWD
---TTTRKTTTHTTTTH

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD


Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.025394

Alignment:
BDVTTTKTTTACWTWHH
---TTTRKTTTHTTTTH

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH


Motif ID: UP00025
Motif name: Foxk1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0257356

Alignment:
HDDTGTTKTTKTHHD
-TTTRKTTTHTTTTH

Original motif Reverse complement motif
Consensus sequence: HHHAYAAYAACAHHH Consensus sequence: HDDTGTTKTTKTHHD


Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0280765

Alignment:
HHHTTRTTDTTTKDH
-TTTRKTTTHTTTTH

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH


Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0284931

Alignment:
HDTYTTGTTWTKDDDT
--TTTRKTTTHTTTTH

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT


Motif ID: UP00145
Motif name: Barhl2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.031537

Alignment:
HHBTTAATTGDTTYTH
--TTTRKTTTHTTTTH

Original motif Reverse complement motif
Consensus sequence: HAMAAHCAATTAABHH Consensus sequence: HHBTTAATTGDTTYTH


Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0324424

Alignment:
DBTHHAAAAAAAAVHDH
---HAAAAHAAARMAAA

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH


Dataset #: 2 Motif ID: 9 Motif name: Motif 9

Original motif Reverse complement motif
Consensus sequence: CWGAGCCAYCTYTC Consensus sequence: GAKAGKTGGCTCWG

Best Matches for Motif ID 9 (Highest to Lowest)

Motif ID: UP00068
Motif name: Eomes_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0120339

Alignment:
VBVDAGGTGTYGVBBV
-GAKAGKTGGCTCWG-

Original motif Reverse complement motif
Consensus sequence: VBVDAGGTGTYGVBBV Consensus sequence: VVBVCKACACCTHVBV


Motif ID: UP00035
Motif name: Hic1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0137859

Alignment:
DBBATGCCAACCHVHH
-CWGAGCCAYCTYTC-

Original motif Reverse complement motif
Consensus sequence: DBBATGCCAACCHVHH Consensus sequence: DDBHGGTTGGCATVBD


Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.017234

Alignment:
HHHHDVVGTTGCTAHGGDHBAHH
--GAKAGKTGGCTCWG-------

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH


Motif ID: UP00264
Motif name: Hoxa1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0174544

Alignment:
MBDRTAATTAGCTHAD
--GAKAGKTGGCTCWG

Original motif Reverse complement motif
Consensus sequence: HTDAGCTAATTAMHBY Consensus sequence: MBDRTAATTAGCTHAD


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 14
Similarity score: 0.0187141

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
---CWGAGCCAYCTYTC------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0198398

Alignment:
HVDDVCAGATGKYHBBV
---GAKAGKTGGCTCWG

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH


Motif ID: UP00052
Motif name: Osr2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0203442

Alignment:
VDWRKAKGTAGCHHDT
--GAKAGKTGGCTCWG

Original motif Reverse complement motif
Consensus sequence: AHHHGCTACYTRMWHV Consensus sequence: VDWRKAKGTAGCHHDT


Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 14
Similarity score: 0.0208381

Alignment:
DVMHHDHKGACCCTCCTSVCBH
------CWGAGCCAYCTYTC--

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH


Motif ID: UP00095
Motif name: Zfp691_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0209451

Alignment:
VHBDDAGGAGTCWBBTD
--GAKAGKTGGCTCWG-

Original motif Reverse complement motif
Consensus sequence: DABBWGACTCCTHDVHV Consensus sequence: VHBDDAGGAGTCWBBTD


Motif ID: UP00228
Motif name: Bapx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0212049

Alignment:
DTBVTTAAGTGGTTHHV
---GAKAGKTGGCTCWG

Original motif Reverse complement motif
Consensus sequence: VHHAACCACTTAAVVAH Consensus sequence: DTBVTTAAGTGGTTHHV


Dataset #: 2 Motif ID: 10 Motif name: Motif 10

Original motif Reverse complement motif
Consensus sequence: CASABACWSACACA Consensus sequence: TGTGTSWGTBTSTG

Best Matches for Motif ID 10 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0357045

Alignment:
VVYDDDCHCAVACAATTDBVAC
CASABACWSACACA--------

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0482294

Alignment:
HVHBVTGTCTGGDDHDD
---TGTGTSWGTBTSTG

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD


Motif ID: UP00039
Motif name: Foxj3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0493845

Alignment:
HDBAHCAWAACADWDVD
CASABACWSACACA---

Original motif Reverse complement motif
Consensus sequence: HDBAHCAWAACADWDVD Consensus sequence: DVHWDTGTTWTGDTBDH


Motif ID: UP00025
Motif name: Foxk1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0507431

Alignment:
HHHAYAAYAACAHHH
CASABACWSACACA-

Original motif Reverse complement motif
Consensus sequence: HHHAYAAYAACAHHH Consensus sequence: HDDTGTTKTTKTHHD


Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 14
Similarity score: 0.0524108

Alignment:
MWSMBAARRATGCDCABHATGD
CASABACWSACACA--------

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR


Motif ID: UP00528
Motif name: Foxm1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0538393

Alignment:
HADTBVADGATGCATCMTGMVHB
CASABACWSACACA---------

Original motif Reverse complement motif
Consensus sequence: HADTBVADGATGCATCMTGMVHB Consensus sequence: VHVRCAYGATGCATCDTVVADTH


Motif ID: UP00031
Motif name: Zbtb3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0538699

Alignment:
DDHHTBCCAGTGABHG
--TGTGTSWGTBTSTG

Original motif Reverse complement motif
Consensus sequence: CHVTCACTGGBADHDD Consensus sequence: DDHHTBCCAGTGABHG


Motif ID: UP00014
Motif name: Sox17_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0541456

Alignment:
VHBHHCATTCATRHVDD
---CASABACWSACACA

Original motif Reverse complement motif
Consensus sequence: VHBHHCATTCATRHVDD Consensus sequence: DDBDKATGAATGHDBHV


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0541653

Alignment:
VYWVVHCRCCACMCACGAHSBHH
---------CASABACWSACACA

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0545034

Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
--------TGTGTSWGTBTSTG-

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Dataset #: 2 Motif ID: 11 Motif name: Motif 11

Original motif Reverse complement motif
Consensus sequence: AAAATKCTATT Consensus sequence: AATAGYATTTT

Best Matches for Motif ID 11 (Highest to Lowest)

Motif ID: UP00145
Motif name: Barhl2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0314776

Alignment:
HAMAAHCAATTAABHH
AAAATKCTATT-----

Original motif Reverse complement motif
Consensus sequence: HAMAAHCAATTAABHH Consensus sequence: HHBTTAATTGDTTYTH


Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0388915

Alignment:
HDHHTTTTATTKKHDD
AAAATKCTATT-----

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD


Motif ID: UP00016
Motif name: Sry_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.039378

Alignment:
VDDDATTATAATHDHV
-AAAATKCTATT----

Original motif Reverse complement motif
Consensus sequence: BHDHATTATAATDDDV Consensus sequence: VDDDATTATAATHDHV


Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.039567

Alignment:
HDDDATTTTATTKVRDB
-AAAATKCTATT-----

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB


Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0403247

Alignment:
WBHHHHHMDATTGTTHDHDVHH
-AAAATKCTATT----------

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH


Motif ID: UP00038
Motif name: Spdef_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0405096

Alignment:
DDBHACATCCTAKWDV
---AAAATKCTATT--

Original motif Reverse complement motif
Consensus sequence: DDBHACATCCTAKWDV Consensus sequence: VDWYTAGGATGTHVDH


Motif ID: UP00191
Motif name: Pou2f2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0406764

Alignment:
BHHDATTTGCATAHHV
----AATAGYATTTT-

Original motif Reverse complement motif
Consensus sequence: BHDTATGCAAATDHDV Consensus sequence: BHHDATTTGCATAHHV


Motif ID: UP00179
Motif name: Pou2f3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0407045

Alignment:
BHHVATTTGCATAHHV
----AATAGYATTTT-

Original motif Reverse complement motif
Consensus sequence: BHDTATGCAAATBHDV Consensus sequence: BHHVATTTGCATAHHV


Motif ID: UP00023
Motif name: Sox30_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0413872

Alignment:
HHHHMHATTGTTBDHD
AATAGYATTTT-----

Original motif Reverse complement motif
Consensus sequence: DHDBAACAATDRHHHH Consensus sequence: HHHHMHATTGTTBDHD


Motif ID: UP00166
Motif name: Barhl1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0427435

Alignment:
HAHAACCAATTARBDH
AAAATKCTATT-----

Original motif Reverse complement motif
Consensus sequence: HAHAACCAATTARBDH Consensus sequence: DDVKTAATTGGTTDTH


Dataset #: 2 Motif ID: 12 Motif name: Motif 12

Original motif Reverse complement motif
Consensus sequence: TGAAAATSCTT Consensus sequence: AAGSATTTTCA

Best Matches for Motif ID 12 (Highest to Lowest)

Motif ID: UP00179
Motif name: Pou2f3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0170413

Alignment:
BHHVATTTGCATAHHV
AAGSATTTTCA-----

Original motif Reverse complement motif
Consensus sequence: BHDTATGCAAATBHDV Consensus sequence: BHHVATTTGCATAHHV


Motif ID: UP00191
Motif name: Pou2f2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0186797

Alignment:
BHHDATTTGCATAHHV
AAGSATTTTCA-----

Original motif Reverse complement motif
Consensus sequence: BHDTATGCAAATDHDV Consensus sequence: BHHDATTTGCATAHHV


Motif ID: UP00044
Motif name: Mafk_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.025968

Alignment:
DWAAAWTGCTGACTH
TGAAAATSCTT----

Original motif Reverse complement motif
Consensus sequence: DWAAAWTGCTGACTH Consensus sequence: HAGTCAGCAWTTTWD


Motif ID: UP00389
Motif name: Nkx3-1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0281427

Alignment:
BDTTTAAGTACTTDDDD
--TGAAAATSCTT----

Original motif Reverse complement motif
Consensus sequence: DDHDAAGTACTTAAADB Consensus sequence: BDTTTAAGTACTTDDDD


Motif ID: UP00153
Motif name: Pitx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.02834

Alignment:
HBVDRGGGATTAAMDHH
----AAGSATTTTCA--

Original motif Reverse complement motif
Consensus sequence: HBVDRGGGATTAAMDHH Consensus sequence: HHDRTTAATCCCKHBVH


Motif ID: UP00219
Motif name: Cutl1_3494.2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0294239

Alignment:
DADTGATMATCABTD
---TGAAAATSCTT-

Original motif Reverse complement motif
Consensus sequence: DAVTGATRATCAHTD Consensus sequence: DADTGATMATCABTD


Motif ID: UP00119
Motif name: Nkx2-9
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0300831

Alignment:
HDTTBAAGTACTTDAAA
-----AAGSATTTTCA-

Original motif Reverse complement motif
Consensus sequence: TTTDAAGTACTTVAADH Consensus sequence: HDTTBAAGTACTTDAAA


Motif ID: UP00190
Motif name: Nkx2-3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0302066

Alignment:
HHTTAAGTACTTAAMK
----AAGSATTTTCA-

Original motif Reverse complement motif
Consensus sequence: YYTTAAGTACTTAAHD Consensus sequence: HHTTAAGTACTTAAMK


Motif ID: UP00038
Motif name: Spdef_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0318364

Alignment:
VDWYTAGGATGTHVDH
----AAGSATTTTCA-

Original motif Reverse complement motif
Consensus sequence: DDBHACATCCTAKWDV Consensus sequence: VDWYTAGGATGTHVDH


Motif ID: UP00080
Motif name: Gata5_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0333422

Alignment:
DDHBKCTTATCAGDDDH
-AAGSATTTTCA-----

Original motif Reverse complement motif
Consensus sequence: HDDDCTGATAAGRVDDD Consensus sequence: DDHBKCTTATCAGDDDH


Dataset #: 2 Motif ID: 13 Motif name: Motif 13

Original motif Reverse complement motif
Consensus sequence: AACATATTTTCA Consensus sequence: TGAAAATATGTT

Best Matches for Motif ID 13 (Highest to Lowest)

Motif ID: UP00250
Motif name: Irx5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 12
Similarity score: 0.0253217

Alignment:
DDDHWACATGTWHDABW
TGAAAATATGTT-----

Original motif Reverse complement motif
Consensus sequence: DDDHWACATGTWHDABW Consensus sequence: WVTDHWACATGTWHDDD


Motif ID: UP00236
Motif name: Irx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0267342

Alignment:
WDDDTACATGTADDWBW
TGAAAATATGTT-----

Original motif Reverse complement motif
Consensus sequence: WDDDTACATGTADDWBW Consensus sequence: WVWDDTACATGTADDDW


Motif ID: UP00059
Motif name: Arid5a_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0285822

Alignment:
HDTDVCAATATTMV
--TGAAAATATGTT

Original motif Reverse complement motif
Consensus sequence: VYAATATTGVDADH Consensus sequence: HDTDVCAATATTMV


Motif ID: UP00194
Motif name: Irx4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0297419

Alignment:
WDHDWACATGTWAWABD
TGAAAATATGTT-----

Original motif Reverse complement motif
Consensus sequence: WDHDWACATGTWAWABD Consensus sequence: DBTWTWACATGTWDHDW


Motif ID: UP00223
Motif name: Irx3_0920.1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.029857

Alignment:
DDDDTACATGTAVWWHD
TGAAAATATGTT-----

Original motif Reverse complement motif
Consensus sequence: DDDDTACATGTAVWWHD Consensus sequence: DDWWBTACATGTADDDD


Motif ID: UP00223
Motif name: Irx3_2226.1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 12
Similarity score: 0.0299906

Alignment:
DDDHTACATGTAVWDHD
TGAAAATATGTT-----

Original motif Reverse complement motif
Consensus sequence: DDDHTACATGTAVWDHD Consensus sequence: DHDWBTACATGTAHDDD


Motif ID: UP00150
Motif name: Irx6
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0303256

Alignment:
AHWDBTACATGTADHTH
TGAAAATATGTT-----

Original motif Reverse complement motif
Consensus sequence: HAHDTACATGTAVDWHT Consensus sequence: AHWDBTACATGTADHTH


Motif ID: UP00171
Motif name: Msx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.0315999

Alignment:
HHVTTAATTKGTTHTV
-TGAAAATATGTT---

Original motif Reverse complement motif
Consensus sequence: VAHAACYAATTAABHH Consensus sequence: HHVTTAATTKGTTHTV


Motif ID: UP00146
Motif name: Pou6f1_3733.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0330849

Alignment:
DHDASCTCATTATVHHB
---AACATATTTTCA--

Original motif Reverse complement motif
Consensus sequence: VHHVATAATGAGSTDDH Consensus sequence: DHDASCTCATTATVHHB


Motif ID: UP00080
Motif name: Gata5_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0334048

Alignment:
HDDDCTGATAAGRVDDD
AACATATTTTCA-----

Original motif Reverse complement motif
Consensus sequence: HDDDCTGATAAGRVDDD Consensus sequence: DDHBKCTTATCAGDDDH


Dataset #: 2 Motif ID: 14 Motif name: Motif 14

Original motif Reverse complement motif
Consensus sequence: AAAMATTGTTT Consensus sequence: AAACAATYTTT

Best Matches for Motif ID 14 (Highest to Lowest)

Motif ID: UP00114
Motif name: Homez
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0148981

Alignment:
AHWWMATCGTTTTBADD
-AAAMATTGTTT-----

Original motif Reverse complement motif
Consensus sequence: AHWWMATCGTTTTBADD Consensus sequence: HDTVAAAACGATRWWHT


Motif ID: UP00096
Motif name: Sox13_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0154717

Alignment:
WHDWWATTGTTCKDHD
-AAAMATTGTTT----

Original motif Reverse complement motif
Consensus sequence: DHDRGAACAATWWDHW Consensus sequence: WHDWWATTGTTCKDHD


Motif ID: UP00064
Motif name: Sox18_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0200897

Alignment:
HHDHABAACAATHBWV
-----AAACAATYTTT

Original motif Reverse complement motif
Consensus sequence: BWBHATTGTTBTHDHH Consensus sequence: HHDHABAACAATHBWV


Motif ID: UP00062
Motif name: Sox4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.020377

Alignment:
DDHVDAACAATTDDHVV
----AAACAATYTTT--

Original motif Reverse complement motif
Consensus sequence: VVHDDAATTGTTDVDDD Consensus sequence: DDHVDAACAATTDDHVV


Motif ID: UP00051
Motif name: Sox8_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0208116

Alignment:
DDDHDAACAATWBATDD
----AAACAATYTTT--

Original motif Reverse complement motif
Consensus sequence: DDATBWATTGTTHHDDD Consensus sequence: DDDHDAACAATWBATDD


Motif ID: UP00023
Motif name: Sox30_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0235407

Alignment:
HHHHMHATTGTTBDHD
--AAAMATTGTTT---

Original motif Reverse complement motif
Consensus sequence: DHDBAACAATDRHHHH Consensus sequence: HHHHMHATTGTTBDHD


Motif ID: UP00091
Motif name: Sox5_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0236834

Alignment:
DHDDGAACAATWDDHD
----AAACAATYTTT-

Original motif Reverse complement motif
Consensus sequence: DHDDGAACAATWDDHD Consensus sequence: DHDDWATTGTTCDDHD


Motif ID: UP00014
Motif name: Sox17_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0256157

Alignment:
VDDAACAATTVAWHD
--AAACAATYTTT--

Original motif Reverse complement motif
Consensus sequence: VDDAACAATTVAWHD Consensus sequence: DDWTBAATTGTTDDB


Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.0264034

Alignment:
WBHHHHHMDATTGTTHDHDVHH
-----AAAMATTGTTT------

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH


Motif ID: UP00075
Motif name: Sox15_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0265966

Alignment:
DHVKMWATTGTTHDHDH
--AAAMATTGTTT----

Original motif Reverse complement motif
Consensus sequence: HDDDDAACAATWRRBHD Consensus sequence: DHVKMWATTGTTHDHDH


Dataset #: 2 Motif ID: 15 Motif name: Motif 15

Original motif Reverse complement motif
Consensus sequence: AAMATGTTTMAA Consensus sequence: TTYAAACATYTT

Best Matches for Motif ID 15 (Highest to Lowest)

Motif ID: UP00250
Motif name: Irx5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 12
Similarity score: 0.00569393

Alignment:
WVTDHWACATGTWHDDD
-----AAMATGTTTMAA

Original motif Reverse complement motif
Consensus sequence: DDDHWACATGTWHDABW Consensus sequence: WVTDHWACATGTWHDDD


Motif ID: UP00236
Motif name: Irx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 12
Similarity score: 0.00753568

Alignment:
WVWDDTACATGTADDDW
-----AAMATGTTTMAA

Original motif Reverse complement motif
Consensus sequence: WDDDTACATGTADDWBW Consensus sequence: WVWDDTACATGTADDDW


Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.00927938

Alignment:
VVVWTTGTTTAMATTWD
-AAMATGTTTMAA----

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD


Motif ID: UP00150
Motif name: Irx6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.0104366

Alignment:
HAHDTACATGTAVDWHT
----AAMATGTTTMAA-

Original motif Reverse complement motif
Consensus sequence: HAHDTACATGTAVDWHT Consensus sequence: AHWDBTACATGTADHTH


Motif ID: UP00194
Motif name: Irx4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0110074

Alignment:
WDHDWACATGTWAWABD
----AAMATGTTTMAA-

Original motif Reverse complement motif
Consensus sequence: WDHDWACATGTWAWABD Consensus sequence: DBTWTWACATGTWDHDW


Motif ID: UP00068
Motif name: Eomes_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0113539

Alignment:
HHHTTTCACACCTDHBV
----TTYAAACATYTT-

Original motif Reverse complement motif
Consensus sequence: BVHDAGGTGTGAAAHHH Consensus sequence: HHHTTTCACACCTDHBV


Motif ID: UP00223
Motif name: Irx3_2226.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 12
Similarity score: 0.0118824

Alignment:
DHDWBTACATGTAHDDD
-----AAMATGTTTMAA

Original motif Reverse complement motif
Consensus sequence: DDDHTACATGTAVWDHD Consensus sequence: DHDWBTACATGTAHDDD


Motif ID: UP00223
Motif name: Irx3_0920.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0132149

Alignment:
DDDDTACATGTAVWWHD
-----AAMATGTTTMAA

Original motif Reverse complement motif
Consensus sequence: DDDDTACATGTAVWWHD Consensus sequence: DDWWBTACATGTADDDD


Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0142458

Alignment:
BBVTTTGTTTACATTDD
-AAMATGTTTMAA----

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD


Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 12
Similarity score: 0.0210343

Alignment:
DVVTTTGTTTACDTHDH
-AAMATGTTTMAA----

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH


Dataset #: 2 Motif ID: 16 Motif name: Motif 16

Original motif Reverse complement motif
Consensus sequence: ACAACACATTT Consensus sequence: AAATGTGTTGT

Best Matches for Motif ID 16 (Highest to Lowest)

Motif ID: UP00033
Motif name: Zfp410_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0181

Alignment:
DVDDATGGGATGKMDDV
--AAATGTGTTGT----

Original motif Reverse complement motif
Consensus sequence: DVDDATGGGATGKMDDV Consensus sequence: BDDYYCATCCCATDDBD


Motif ID: UP00068
Motif name: Eomes_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0202807

Alignment:
VBVDAGGTGTYGVBBV
--AAATGTGTTGT---

Original motif Reverse complement motif
Consensus sequence: VBVDAGGTGTYGVBBV Consensus sequence: VVBVCKACACCTHVBV


Motif ID: UP00171
Motif name: Msx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0211208

Alignment:
HHVTTAATTKGTTHTV
----AAATGTGTTGT-

Original motif Reverse complement motif
Consensus sequence: VAHAACYAATTAABHH Consensus sequence: HHVTTAATTKGTTHTV


Motif ID: UP00072
Motif name: IRC900814_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0216511

Alignment:
BHDWTTTGTCGTAHDD
-AAATGTGTTGT----

Original motif Reverse complement motif
Consensus sequence: DDHTACGACAAAWDDB Consensus sequence: BHDWTTTGTCGTAHDD


Motif ID: UP00166
Motif name: Barhl1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0230664

Alignment:
DDVKTAATTGGTTDTH
----AAATGTGTTGT-

Original motif Reverse complement motif
Consensus sequence: HAHAACCAATTARBDH Consensus sequence: DDVKTAATTGGTTDTH


Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0231414

Alignment:
HAAWDTGCTGACDWARH
AAATGTGTTGT------

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH


Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0270722

Alignment:
YBVDMGTGGGTGGTCKVVBVBBT
---AAATGTGTTGT---------

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT


Motif ID: UP00236
Motif name: Irx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0272203

Alignment:
WVWDDTACATGTADDDW
------AAATGTGTTGT

Original motif Reverse complement motif
Consensus sequence: WDDDTACATGTADDWBW Consensus sequence: WVWDDTACATGTADDDW


Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 11
Similarity score: 0.0274347

Alignment:
DTVBDDRGACCACCCAGDWDGBH
--------ACAACACATTT----

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH


Motif ID: UP00146
Motif name: Pou6f1_3733.1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0275808

Alignment:
VHHVATAATGAGSTDDH
-----AAATGTGTTGT-

Original motif Reverse complement motif
Consensus sequence: VHHVATAATGAGSTDDH Consensus sequence: DHDASCTCATTATVHHB


Dataset #: 2 Motif ID: 17 Motif name: Motif 17

Original motif Reverse complement motif
Consensus sequence: AAWATRTATTT Consensus sequence: AAATAKATWTT

Best Matches for Motif ID 17 (Highest to Lowest)

Motif ID: UP00266
Motif name: Prrx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 11
Similarity score: 0.0142423

Alignment:
AVDAKKTAATTAGTTVV
AAWATRTATTT------

Original motif Reverse complement motif
Consensus sequence: VBAACTAATTARYTDVT Consensus sequence: AVDAKKTAATTAGTTVV


Motif ID: UP00150
Motif name: Irx6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.020069

Alignment:
AHWDBTACATGTADHTH
-----AAWATRTATTT-

Original motif Reverse complement motif
Consensus sequence: HAHDTACATGTAVDWHT Consensus sequence: AHWDBTACATGTADHTH


Motif ID: UP00236
Motif name: Irx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.0214423

Alignment:
WVWDDTACATGTADDDW
-----AAWATRTATTT-

Original motif Reverse complement motif
Consensus sequence: WDDDTACATGTADDWBW Consensus sequence: WVWDDTACATGTADDDW


Motif ID: UP00261
Motif name: Lhx4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0230284

Alignment:
DADVCTAATTAGBTWTG
------AAATAKATWTT

Original motif Reverse complement motif
Consensus sequence: DADVCTAATTAGBTWTG Consensus sequence: CAWABCTAATTAGBDTD


Motif ID: UP00170
Motif name: Isl2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0233945

Alignment:
HWDTTAATYKMTTHHR
----AAATAKATWTT-

Original motif Reverse complement motif
Consensus sequence: MHHAAYYMATTAADWH Consensus sequence: HWDTTAATYKMTTHHR


Motif ID: UP00212
Motif name: Lhx5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 11
Similarity score: 0.0236276

Alignment:
VDHWTTTAATTAATHHV
AAWATRTATTT------

Original motif Reverse complement motif
Consensus sequence: VDHATTAATTAAAWHHB Consensus sequence: VDHWTTTAATTAATHHV


Motif ID: UP00108
Motif name: Alx3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0243258

Alignment:
VHVAKMTAATTAKTHBW
AAWATRTATTT------

Original motif Reverse complement motif
Consensus sequence: WVHAYTAATTARYTVHV Consensus sequence: VHVAKMTAATTAKTHBW


Motif ID: UP00171
Motif name: Msx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0254704

Alignment:
HHVTTAATTKGTTHTV
----AAATAKATWTT-

Original motif Reverse complement motif
Consensus sequence: VAHAACYAATTAABHH Consensus sequence: HHVTTAATTKGTTHTV


Motif ID: UP00250
Motif name: Irx5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.0259267

Alignment:
WVTDHWACATGTWHDDD
-----AAWATRTATTT-

Original motif Reverse complement motif
Consensus sequence: DDDHWACATGTWHDABW Consensus sequence: WVTDHWACATGTWHDDD


Motif ID: UP00223
Motif name: Irx3_2226.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0263428

Alignment:
DDDHTACATGTAVWDHD
----AAWATRTATTT--

Original motif Reverse complement motif
Consensus sequence: DDDHTACATGTAVWDHD Consensus sequence: DHDWBTACATGTAHDDD


Dataset #: 2 Motif ID: 18 Motif name: Motif 18

Original motif Reverse complement motif
Consensus sequence: TAATKATATAA Consensus sequence: TTATATYATTA

Best Matches for Motif ID 18 (Highest to Lowest)

Motif ID: UP00264
Motif name: Hoxa1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0229661

Alignment:
MBDRTAATTAGCTHAD
----TAATKATATAA-

Original motif Reverse complement motif
Consensus sequence: HTDAGCTAATTAMHBY Consensus sequence: MBDRTAATTAGCTHAD


Motif ID: UP00129
Motif name: Pou3f1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.02767

Alignment:
DVBTAATTAATTAABTH
---TAATKATATAA---

Original motif Reverse complement motif
Consensus sequence: DVBTAATTAATTAABTH Consensus sequence: DAVTTAATTAATTAVBD


Motif ID: UP00212
Motif name: Lhx5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.0295456

Alignment:
VDHATTAATTAAAWHHB
-----TAATKATATAA-

Original motif Reverse complement motif
Consensus sequence: VDHATTAATTAAAWHHB Consensus sequence: VDHWTTTAATTAATHHV


Motif ID: UP00130
Motif name: Lhx3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.0295647

Alignment:
VDAATTAATTAAWWHHB
-----TAATKATATAA-

Original motif Reverse complement motif
Consensus sequence: VDAATTAATTAAWWHHB Consensus sequence: VHHWWTTAATTAATTDV


Motif ID: UP00247
Motif name: Pax4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.0309932

Alignment:
DDSBKMTAATTAKDBVW
------TAATKATATAA

Original motif Reverse complement motif
Consensus sequence: WVVDYTAATTARYBSDH Consensus sequence: DDSBKMTAATTAKDBVW


Motif ID: UP00108
Motif name: Alx3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.0319078

Alignment:
VHVAKMTAATTAKTHBW
------TAATKATATAA

Original motif Reverse complement motif
Consensus sequence: WVHAYTAATTARYTVHV Consensus sequence: VHVAKMTAATTAKTHBW


Motif ID: UP00105
Motif name: Pou3f4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0323543

Alignment:
DVHTAATTAATTADDDB
---TAATKATATAA---

Original motif Reverse complement motif
Consensus sequence: DVHTAATTAATTADDDB Consensus sequence: BDDDTAATTAATTAHBD


Motif ID: UP00202
Motif name: Dlx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0327446

Alignment:
MDTAATTAHMBCHB
--TAATKATATAA-

Original motif Reverse complement motif
Consensus sequence: BHGVRDTAATTADY Consensus sequence: MDTAATTAHMBCHB


Motif ID: UP00128
Motif name: Pou3f2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.0328898

Alignment:
HHDVMTAATTAATTDDV
-----TAATKATATAA-

Original motif Reverse complement motif
Consensus sequence: VDDAATTAATTARBDHD Consensus sequence: HHDVMTAATTAATTDDV


Motif ID: UP00266
Motif name: Prrx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.0331473

Alignment:
AVDAKKTAATTAGTTVV
------TAATKATATAA

Original motif Reverse complement motif
Consensus sequence: VBAACTAATTARYTDVT Consensus sequence: AVDAKKTAATTAGTTVV


Dataset #: 2 Motif ID: 19 Motif name: Motif 19

Original motif Reverse complement motif
Consensus sequence: AAAGRTMAAACTA Consensus sequence: TAGTTTYAKCTTT

Best Matches for Motif ID 19 (Highest to Lowest)

Motif ID: UP00074
Motif name: Isgf3g_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0359564

Alignment:
TDAGTTTCGWTTKDV
-TAGTTTYAKCTTT-

Original motif Reverse complement motif
Consensus sequence: VDRAAWCGAAACTDA Consensus sequence: TDAGTTTCGWTTKDV


Motif ID: UP00083
Motif name: Tcf7l2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.0371142

Alignment:
BDDASATCAAAGGMDDD
-AAAGRTMAAACTA---

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATSTDDV Consensus sequence: BDDASATCAAAGGMDDD


Motif ID: UP00054
Motif name: Tcf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.0377174

Alignment:
BHHASATCAAAGGAHHH
-AAAGRTMAAACTA---

Original motif Reverse complement motif
Consensus sequence: BHHASATCAAAGGAHHH Consensus sequence: HHHTCCTTTGATSTHHV


Motif ID: UP00058
Motif name: Tcf3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.0394685

Alignment:
HHHASATCAAAGVRHHH
-AAAGRTMAAACTA---

Original motif Reverse complement motif
Consensus sequence: HHHASATCAAAGVRHHH Consensus sequence: HHHKVCTTTGATSTHHH


Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 13
Similarity score: 0.0406011

Alignment:
HBHDVHDTCTTATCTHTDDHDV
----TAGTTTYAKCTTT-----

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.0411941

Alignment:
VDDAGATCAAAGGKDDD
-AAAGRTMAAACTA---

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD


Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.042799

Alignment:
DHDBCAAGGTCAHVBDH
----AAAGRTMAAACTA

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD


Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0473603

Alignment:
DWAATRTAAACAAWVVB
-AAAGRTMAAACTA---

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD


Motif ID: UP00040
Motif name: Irf5_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0474515

Alignment:
BDKGTTTCGKTWDDD
-TAGTTTYAKCTTT-

Original motif Reverse complement motif
Consensus sequence: DDDWAYCGAAACYDV Consensus sequence: BDKGTTTCGKTWDDD


Motif ID: UP00199
Motif name: Six4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0477024

Alignment:
BBVHVGGTGTCATHDDT
----TAGTTTYAKCTTT

Original motif Reverse complement motif
Consensus sequence: ADDHATGACACCBHBBV Consensus sequence: BBVHVGGTGTCATHDDT


Dataset #: 2 Motif ID: 20 Motif name: Motif 20

Original motif Reverse complement motif
Consensus sequence: TCTKTGTCAAWA Consensus sequence: TWTTGACAYAGA

Best Matches for Motif ID 20 (Highest to Lowest)

Motif ID: UP00258
Motif name: Tgif2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.00294541

Alignment:
VBWTTGACAGCTVBTT
-TWTTGACAYAGA---

Original motif Reverse complement motif
Consensus sequence: AABBAGCTGTCAAWVV Consensus sequence: VBWTTGACAGCTVBTT


Motif ID: UP00210
Motif name: Mrg2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.00709656

Alignment:
DBHTTGACAGSTVDTD
-TWTTGACAYAGA---

Original motif Reverse complement motif
Consensus sequence: DADBASCTGTCAAHVH Consensus sequence: DBHTTGACAGSTVDTD


Motif ID: UP00186
Motif name: Meis1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.00883873

Alignment:
WAVBASCTGTCAAWVH
---TCTKTGTCAAWA-

Original motif Reverse complement motif
Consensus sequence: WAVBASCTGTCAAWVH Consensus sequence: DBWTTGACAGSTBVTW


Motif ID: UP00226
Motif name: Mrg1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.00900015

Alignment:
WAVBASCTGTCAAWHB
---TCTKTGTCAAWA-

Original motif Reverse complement motif
Consensus sequence: WAVBASCTGTCAAWHB Consensus sequence: BHWTTGACAGSTBBTW


Motif ID: UP00122
Motif name: Tgif1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0128037

Alignment:
DABWWTGACAGCTVVBD
--TWTTGACAYAGA---

Original motif Reverse complement motif
Consensus sequence: DABWWTGACAGCTVVBD Consensus sequence: DBVVAGCTGTCAWWVTH


Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0145754

Alignment:
BDVTTTKTTTACWTWHH
-----TWTTGACAYAGA

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH


Motif ID: UP00205
Motif name: Pknox2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.0147372

Alignment:
VHATTGACAGSKSVTH
-TWTTGACAYAGA---

Original motif Reverse complement motif
Consensus sequence: HAVSRSCTGTCAATHB Consensus sequence: VHATTGACAGSKSVTH


Motif ID: UP00203
Motif name: Pknox1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0147793

Alignment:
DRVSASCTGTCAAWVV
---TCTKTGTCAAWA-

Original motif Reverse complement motif
Consensus sequence: DRVSASCTGTCAAWVV Consensus sequence: VVWTTGACAGSTSBKD


Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0150474

Alignment:
HAAWDTGCTGACDWARH
-----TWTTGACAYAGA

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH


Motif ID: UP00103
Motif name: Jundm2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.0167106

Alignment:
HDDKTGASTCAKHRDB
-TWTTGACAYAGA---

Original motif Reverse complement motif
Consensus sequence: VDKDRTGASTCAYHDH Consensus sequence: HDDKTGASTCAKHRDB


Dataset #: 2 Motif ID: 21 Motif name: Motif 21

Original motif Reverse complement motif
Consensus sequence: CTTCTGACCTC Consensus sequence: GAGGTCAGAAG

Best Matches for Motif ID 21 (Highest to Lowest)

Motif ID: UP00079
Motif name: Esrra_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0

Alignment:
VKBBAGGGGTCAHDBBH
-----GAGGTCAGAAG-

Original motif Reverse complement motif
Consensus sequence: VKBBAGGGGTCAHDBBH Consensus sequence: DBBHHTGACCCCTBBYV


Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.00315419

Alignment:
DMTWDGTCAGCADWTTH
--GAGGTCAGAAG----

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH


Motif ID: UP00009
Motif name: Nr2f2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.00435047

Alignment:
BHVDTGACCTTTDVDD
-----GAGGTCAGAAG

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCAHVHB Consensus sequence: BHVDTGACCTTTDVDD


Motif ID: UP00048
Motif name: Rara
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.00499607

Alignment:
HHVGTGACCTTTDVDD
-----GAGGTCAGAAG

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCACVHD Consensus sequence: HHVGTGACCTTTDVDD


Motif ID: UP00053
Motif name: Rxra_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.00503678

Alignment:
DBHBDTGACCCCDHVHB
-CTTCTGACCTC-----

Original motif Reverse complement motif
Consensus sequence: DBHBDTGACCCCDHVHB Consensus sequence: VHBHDGGGGTCAHBHBD


Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.00855607

Alignment:
HHBVHTGACCTTGVDHD
-CTTCTGACCTC-----

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD


Motif ID: UP00020
Motif name: Atf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0106472

Alignment:
DMDMTGACGTCAKHBD
-----GAGGTCAGAAG

Original motif Reverse complement motif
Consensus sequence: DBDRTGACGTCAYHRD Consensus sequence: DMDMTGACGTCAKHBD


Motif ID: UP00066
Motif name: Hnf4a_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0108194

Alignment:
BDBVMGGGGTCAABHDV
-----GAGGTCAGAAG-

Original motif Reverse complement motif
Consensus sequence: BDBVMGGGGTCAABHDV Consensus sequence: BHHVTTGACCCCYVVDB


Motif ID: UP00068
Motif name: Eomes_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0131175

Alignment:
BVHDAGGTGTGAAAHHH
---GAGGTCAGAAG---

Original motif Reverse complement motif
Consensus sequence: BVHDAGGTGTGAAAHHH Consensus sequence: HHHTTTCACACCTDHBV


Motif ID: UP00103
Motif name: Jundm2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0132197

Alignment:
HVGMTGACGTCATCBB
CTTCTGACCTC-----

Original motif Reverse complement motif
Consensus sequence: BBGATGACGTCAYCVH Consensus sequence: HVGMTGACGTCATCBB


Dataset #: 2 Motif ID: 22 Motif name: Motif 22

Original motif Reverse complement motif
Consensus sequence: CAAAGTCCAGC Consensus sequence: GCTGGACTTTG

Best Matches for Motif ID 22 (Highest to Lowest)

Motif ID: UP00066
Motif name: Hnf4a_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0

Alignment:
HHAYTGGACTTTHDBV
--GCTGGACTTTG---

Original motif Reverse complement motif
Consensus sequence: BBHHAAAGTCCAMTHH Consensus sequence: HHAYTGGACTTTHDBV


Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0313848

Alignment:
HHBVHTGACCTTGVDHD
--GCTGGACTTTG----

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD


Motif ID: UP00048
Motif name: Rara
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0347594

Alignment:
DHBHAAAGGTCACVHD
---CAAAGTCCAGC--

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCACVHD Consensus sequence: HHVGTGACCTTTDVDD


Motif ID: UP00009
Motif name: Nr2f2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0448871

Alignment:
DHBHAAAGGTCAHVHB
---CAAAGTCCAGC--

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCAHVHB Consensus sequence: BHVDTGACCTTTDVDD


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 11
Similarity score: 0.0461676

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
---------GCTGGACTTTG---

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0468432

Alignment:
DTVBDDRGACCACCCAGDWDGBH
---CAAAGTCCAGC---------

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH


Motif ID: UP00047
Motif name: Zbtb7b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0474554

Alignment:
BBDVHGGTGGTCBKDDB
-----GCTGGACTTTG-

Original motif Reverse complement motif
Consensus sequence: BDDRVGACCACCHBDVB Consensus sequence: BBDVHGGTGGTCBKDDB


Motif ID: UP00416
Motif name: Fli1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0475257

Alignment:
DHDACCGGAAKTBBVV
---GCTGGACTTTG--

Original motif Reverse complement motif
Consensus sequence: VBBVAYTTCCGGTDDH Consensus sequence: DHDACCGGAAKTBBVV


Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0476315

Alignment:
HDGHHBHRGACCACCCGSVDVG
----CAAAGTCCAGC-------

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH


Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0492402

Alignment:
ABBBBVVRGACCACCCACRDBBM
----CAAAGTCCAGC--------

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT


Dataset #: 2 Motif ID: 23 Motif name: Motif 23

Original motif Reverse complement motif
Consensus sequence: AGAGAAAG Consensus sequence: CTTTCTCT

Best Matches for Motif ID 23 (Highest to Lowest)

Motif ID: UP00101
Motif name: Sox12_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0

Alignment:
HDTMCTTTGTSTVDBB
----CTTTCTCT----

Original motif Reverse complement motif
Consensus sequence: VVDBASACAAAGRADH Consensus sequence: HDTMCTTTGTSTVDBB


Motif ID: UP00419
Motif name: Spic
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00218499

Alignment:
VAAAGMGGAAGTWD
---AGAGAAAG---

Original motif Reverse complement motif
Consensus sequence: VAAAGMGGAAGTWD Consensus sequence: DWACTTCCRCTTTB


Motif ID: UP00074
Motif name: Isgf3g_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0130365

Alignment:
TDAGTTTCGWTTKDV
---CTTTCTCT----

Original motif Reverse complement motif
Consensus sequence: VDRAAWCGAAACTDA Consensus sequence: TDAGTTTCGWTTKDV


Motif ID: UP00085
Motif name: Sfpi1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.013531

Alignment:
BDAWGVGGAAGTDH
---AGAGAAAG---

Original motif Reverse complement motif
Consensus sequence: BDAWGVGGAAGTDH Consensus sequence: HDACTTCCBCWTDV


Motif ID: UP00018
Motif name: Irf4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0150506

Alignment:
TBDKGTTTCGMTDHV
----CTTTCTCT---

Original motif Reverse complement motif
Consensus sequence: VDDAYCGAAACYDVA Consensus sequence: TBDKGTTTCGMTDHV


Motif ID: UP00409
Motif name: Elf5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0153654

Alignment:
BWAHSMGGAAGTWD
---AGAGAAAG---

Original motif Reverse complement motif
Consensus sequence: BWAHSMGGAAGTWD Consensus sequence: DWACTTCCRSDTWV


Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0177379

Alignment:
BDHDDADAGATAAGADHBDHVD
-------AGAGAAAG-------

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.017774

Alignment:
HBDDDAACAAAGRVBHH
----AGAGAAAG-----

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH


Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.019138

Alignment:
HBDDRAACAAAGRABHH
----AGAGAAAG-----

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH


Motif ID: UP00040
Motif name: Irf5_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0202543

Alignment:
BDKGTTTCGKTWDDD
---CTTTCTCT----

Original motif Reverse complement motif
Consensus sequence: DDDWAYCGAAACYDV Consensus sequence: BDKGTTTCGKTWDDD


Dataset #: 2 Motif ID: 24 Motif name: Motif 24

Original motif Reverse complement motif
Consensus sequence: TCCTCCTGGAA Consensus sequence: TTCCAGGAGGA

Best Matches for Motif ID 24 (Highest to Lowest)

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 11
Similarity score: 0.0142508

Alignment:
YDYBDHTMCACGTGGADDBMDGT
-----TTCCAGGAGGA-------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00043
Motif name: Bcl6b_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0219794

Alignment:
VHHATTCCTYGAAAGD
--TCCTCCTGGAA---

Original motif Reverse complement motif
Consensus sequence: DCTTTCKAGGAATHHV Consensus sequence: VHHATTCCTYGAAAGD


Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0220915

Alignment:
DVHCCTGCTGBGDDB
--TCCTCCTGGAA--

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB


Motif ID: UP00022
Motif name: Zfp740_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0240277

Alignment:
DDDTWCCCCCCGGDRVH
----TCCTCCTGGAA--

Original motif Reverse complement motif
Consensus sequence: DDDTWCCCCCCGGDRVH Consensus sequence: HVKDCCGGGGGGWADDD


Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0255161

Alignment:
DVBCYTGCTGBGDDD
--TCCTCCTGGAA--

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD


Motif ID: UP00420
Motif name: Elk3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.0258834

Alignment:
VBVDMCTTCCGGTVBVD
------TTCCAGGAGGA

Original motif Reverse complement motif
Consensus sequence: DVBBACCGGAAGYDVVV Consensus sequence: VBVDMCTTCCGGTVBVD


Motif ID: UP00006
Motif name: Zic3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0261265

Alignment:
DVHCYTGCTGTGHDH
--TCCTCCTGGAA--

Original motif Reverse complement motif
Consensus sequence: DDDCACAGCAKGHVD Consensus sequence: DVHCYTGCTGTGHDH


Motif ID: UP00013
Motif name: Gabpa_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0280194

Alignment:
BHHHACTTCCGGTHHBD
------TTCCAGGAGGA

Original motif Reverse complement motif
Consensus sequence: HVHHACCGGAAGTDHHV Consensus sequence: BHHHACTTCCGGTHHBD


Motif ID: UP00410
Motif name: Elk1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0292751

Alignment:
DHBDACTTCCGGTVHVB
------TTCCAGGAGGA

Original motif Reverse complement motif
Consensus sequence: VVHBACCGGAAGTDBHD Consensus sequence: DHBDACTTCCGGTVHVB


Motif ID: UP00183
Motif name: Hoxa13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0307181

Alignment:
HDHBCTCGTAAAAWBD
--TCCTCCTGGAA---

Original motif Reverse complement motif
Consensus sequence: HDHBCTCGTAAAAWBD Consensus sequence: DVWTTTTACGAGBHDH


Dataset #: 2 Motif ID: 25 Motif name: Motif 25

Original motif Reverse complement motif
Consensus sequence: CTGCTTTCCMAA Consensus sequence: TTYGGAAAGCAG

Best Matches for Motif ID 25 (Highest to Lowest)

Motif ID: UP00018
Motif name: Irf4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0328573

Alignment:
TBDKGTTTCGMTDHV
-CTGCTTTCCMAA--

Original motif Reverse complement motif
Consensus sequence: VDDAYCGAAACYDVA Consensus sequence: TBDKGTTTCGMTDHV


Motif ID: UP00015
Motif name: Ehf_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0339295

Alignment:
WDSHTYGGAAVTDVDW
---TTYGGAAAGCAG-

Original motif Reverse complement motif
Consensus sequence: WDVDABTTCCKAHSDW Consensus sequence: WDSHTYGGAAVTDVDW


Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0362612

Alignment:
DMTWDGTCAGCADWTTH
-TTYGGAAAGCAG----

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH


Motif ID: UP00122
Motif name: Tgif1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0373175

Alignment:
DBVVAGCTGTCAWWVTH
---CTGCTTTCCMAA--

Original motif Reverse complement motif
Consensus sequence: DABWWTGACAGCTVVBD Consensus sequence: DBVVAGCTGTCAWWVTH


Motif ID: UP00258
Motif name: Tgif2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0385167

Alignment:
AABBAGCTGTCAAWVV
---CTGCTTTCCMAA-

Original motif Reverse complement motif
Consensus sequence: AABBAGCTGTCAAWVV Consensus sequence: VBWTTGACAGCTVBTT


Motif ID: UP00148
Motif name: Hdx
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0391678

Alignment:
DDKDHGAAATCAHHBHV
-TTYGGAAAGCAG----

Original motif Reverse complement motif
Consensus sequence: DDKDHGAAATCAHHBHV Consensus sequence: BDBDHTGATTTCDHYDD


Motif ID: UP00040
Motif name: Irf5_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.04057

Alignment:
DDDWAYCGAAACYDV
---TTYGGAAAGCAG

Original motif Reverse complement motif
Consensus sequence: DDDWAYCGAAACYDV Consensus sequence: BDKGTTTCGKTWDDD


Motif ID: UP00192
Motif name: Six1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.0414168

Alignment:
AVHDHTGATACCCMDHH
----CTGCTTTCCMAA-

Original motif Reverse complement motif
Consensus sequence: DHDRGGGTATCAHDHBT Consensus sequence: AVHDHTGATACCCMDHH


Motif ID: UP00159
Motif name: Six2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.0420524

Alignment:
AHWDGTGATACCCMRTD
----CTGCTTTCCMAA-

Original motif Reverse complement motif
Consensus sequence: DAKRGGGTATCACDWHT Consensus sequence: AHWDGTGATACCCMRTD


Motif ID: UP00235
Motif name: Hoxc11
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.0421437

Alignment:
HAADGTCGTAAAAHDD
----TTYGGAAAGCAG

Original motif Reverse complement motif
Consensus sequence: HAADGTCGTAAAAHDD Consensus sequence: HDHTTTTACGACDTTH


Dataset #: 2 Motif ID: 26 Motif name: Motif 26

Original motif Reverse complement motif
Consensus sequence: TTTATGGTGAGCAT Consensus sequence: ATGCTCACCATAAA

Best Matches for Motif ID 26 (Highest to Lowest)

Motif ID: UP00146
Motif name: Pou6f1_3733.1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0269204

Alignment:
DHDASCTCATTATVHHB
--ATGCTCACCATAAA-

Original motif Reverse complement motif
Consensus sequence: VHHVATAATGAGSTDDH Consensus sequence: DHDASCTCATTATVHHB


Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 13
Similarity score: 0.511393

Alignment:
-DCATDBTGHGCATKMTTBRSWR
TTTATGGTGAGCAT---------

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR


Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 13
Similarity score: 0.520342

Alignment:
HAAWDTGCTGACDWARH-
----ATGCTCACCATAAA

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH


Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.520462

Alignment:
DBDHCGTGTGCAAMDH-
-TTTATGGTGAGCAT--

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH


Motif ID: UP00035
Motif name: Hic1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.524109

Alignment:
-DDBHGGTTGGCATVBD
TTTATGGTGAGCAT---

Original motif Reverse complement motif
Consensus sequence: DBBATGCCAACCHVHH Consensus sequence: DDBHGGTTGGCATVBD


Motif ID: UP00072
Motif name: IRC900814_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 1.01715

Alignment:
--DDHTACGACAAAWDDB
--TTTATGGTGAGCAT--

Original motif Reverse complement motif
Consensus sequence: DDHTACGACAAAWDDB Consensus sequence: BHDWTTTGTCGTAHDD


Motif ID: UP00191
Motif name: Pou2f2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 1.0174

Alignment:
BHDTATGCAAATDHDV--
--TTTATGGTGAGCAT--

Original motif Reverse complement motif
Consensus sequence: BHDTATGCAAATDHDV Consensus sequence: BHHDATTTGCATAHHV


Motif ID: UP00179
Motif name: Pou2f3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 1.01782

Alignment:
BHDTATGCAAATBHDV--
--TTTATGGTGAGCAT--

Original motif Reverse complement motif
Consensus sequence: BHDTATGCAAATBHDV Consensus sequence: BHHVATTTGCATAHHV


Motif ID: UP00133
Motif name: Cdx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 12
Similarity score: 1.02211

Alignment:
--DVVGGYMATAAAAHKH
ATGCTCACCATAAA----

Original motif Reverse complement motif
Consensus sequence: DVVGGYMATAAAAHKH Consensus sequence: HRHTTTTATYMCCVBD


Motif ID: UP00173
Motif name: Hoxc13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 1.02921

Alignment:
DHWTTTTAMGAGBDHH--
--ATGCTCACCATAAA--

Original motif Reverse complement motif
Consensus sequence: HHDBCTCRTAAAAWHD Consensus sequence: DHWTTTTAMGAGBDHH


Dataset #: 2 Motif ID: 27 Motif name: Motif 27

Original motif Reverse complement motif
Consensus sequence: ATGTWTTCATTMAT Consensus sequence: ATYAATGAAWACAT

Best Matches for Motif ID 27 (Highest to Lowest)

Motif ID: UP00130
Motif name: Lhx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0285638

Alignment:
VDAATTAATTAAWWHHB
---ATYAATGAAWACAT

Original motif Reverse complement motif
Consensus sequence: VDAATTAATTAAWWHHB Consensus sequence: VHHWWTTAATTAATTDV


Motif ID: UP00212
Motif name: Lhx5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0306386

Alignment:
VDHATTAATTAAAWHHB
---ATYAATGAAWACAT

Original motif Reverse complement motif
Consensus sequence: VDHATTAATTAAAWHHB Consensus sequence: VDHWTTTAATTAATHHV


Motif ID: UP00169
Motif name: Lmx1b
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0343199

Alignment:
VDWWWTTAATTAATDHB
ATGTWTTCATTMAT---

Original motif Reverse complement motif
Consensus sequence: VDWWWTTAATTAATDHB Consensus sequence: BHDATTAATTAAWWWHB


Motif ID: UP00262
Motif name: Lhx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0349569

Alignment:
VVDATTAATTAAWWAHB
---ATYAATGAAWACAT

Original motif Reverse complement motif
Consensus sequence: VVDATTAATTAAWWAHB Consensus sequence: BHTWWTTAATTAATDVV


Motif ID: UP00244
Motif name: Tlx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0361912

Alignment:
WWDTTATTAATTHATTV
-ATGTWTTCATTMAT--

Original motif Reverse complement motif
Consensus sequence: BAATHAATTAATAAHWW Consensus sequence: WWDTTATTAATTHATTV


Motif ID: UP00188
Motif name: Lmx1a
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0375132

Alignment:
BDWWWTTAATTAAHHVG
---ATYAATGAAWACAT

Original motif Reverse complement motif
Consensus sequence: CVHHTTAATTAAWWWHB Consensus sequence: BDWWWTTAATTAAHHVG


Motif ID: UP00155
Motif name: Hmx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0386004

Alignment:
ADBVHTTAATTGCTTVB
---ATYAATGAAWACAT

Original motif Reverse complement motif
Consensus sequence: VVAAGCAATTAAHVVDT Consensus sequence: ADBVHTTAATTGCTTVB


Motif ID: UP00157
Motif name: Hmx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0390217

Alignment:
VBVAGCAATTAAHVVAT
---ATYAATGAAWACAT

Original motif Reverse complement motif
Consensus sequence: VBVAGCAATTAAHVVAT Consensus sequence: ATBVHTTAATTGCTBBB


Motif ID: UP00172
Motif name: Prop1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0397917

Alignment:
VVVVTTAATTAABDDDC
---ATYAATGAAWACAT

Original motif Reverse complement motif
Consensus sequence: VVVVTTAATTAABDDDC Consensus sequence: GDDDBTTAATTAABBVV


Motif ID: UP00237
Motif name: Otp
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.041444

Alignment:
CHDMTTAATTAAKDHVV
---ATYAATGAAWACAT

Original motif Reverse complement motif
Consensus sequence: VVHDRTTAATTAAYDDG Consensus sequence: CHDMTTAATTAAKDHVV


Dataset #: 2 Motif ID: 28 Motif name: Motif 28

Original motif Reverse complement motif
Consensus sequence: AAAGWCATWAA Consensus sequence: TTWATGWCTTT

Best Matches for Motif ID 28 (Highest to Lowest)

Motif ID: UP00246
Motif name: Hoxa11
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.011591

Alignment:
HDADGTCGTAAAAHDD
-AAAGWCATWAA----

Original motif Reverse complement motif
Consensus sequence: HDADGTCGTAAAAHDD Consensus sequence: DDDTTTTACGACDTDH


Motif ID: UP00235
Motif name: Hoxc11
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0124232

Alignment:
HAADGTCGTAAAAHDD
-AAAGWCATWAA----

Original motif Reverse complement motif
Consensus sequence: HAADGTCGTAAAAHDD Consensus sequence: HDHTTTTACGACDTTH


Motif ID: UP00207
Motif name: Hoxb9
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0163525

Alignment:
VRRGCMATAAAAHHHD
AAAGWCATWAA-----

Original motif Reverse complement motif
Consensus sequence: VRRGCMATAAAAHHHD Consensus sequence: HDHHTTTTATRGCKMV


Motif ID: UP00197
Motif name: Hoxc9
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0176256

Alignment:
VDHHTTAATGACCBHV
----TTWATGWCTTT-

Original motif Reverse complement motif
Consensus sequence: VDVGGTCATTAAHHDB Consensus sequence: VDHHTTAATGACCBHV


Motif ID: UP00245
Motif name: Hoxc10
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.01781

Alignment:
HDDDGTCGTAAADHBB
-AAAGWCATWAA----

Original motif Reverse complement motif
Consensus sequence: HDDDGTCGTAAADHBB Consensus sequence: VBDDTTTACGACDDDH


Motif ID: UP00117
Motif name: Hoxd11
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0206572

Alignment:
HHDVGTCGTAAAAHHHD
-AAAGWCATWAA-----

Original motif Reverse complement motif
Consensus sequence: HHDVGTCGTAAAAHHHD Consensus sequence: DDDHTTTTACGACVDHH


Motif ID: UP00240
Motif name: Cdx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0231269

Alignment:
DDVGGTMATAAAABKH
-AAAGWCATWAA----

Original motif Reverse complement motif
Consensus sequence: DDVGGTMATAAAABKH Consensus sequence: HRVTTTTATYACCBDD


Motif ID: UP00213
Motif name: Hoxa9
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 11
Similarity score: 0.0241179

Alignment:
DCGGYCATWAAAWTADW
AAAGWCATWAA------

Original motif Reverse complement motif
Consensus sequence: DCGGYCATWAAAWTADW Consensus sequence: WDTAWTTTWATGKCCGD


Motif ID: UP00133
Motif name: Cdx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0264981

Alignment:
DVVGGYMATAAAAHKH
-AAAGWCATWAA----

Original motif Reverse complement motif
Consensus sequence: DVVGGYMATAAAAHKH Consensus sequence: HRHTTTTATYMCCVBD


Motif ID: UP00177
Motif name: Hoxd12
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0271901

Alignment:
HHDVGTCGTAAAAHHHD
-AAAGWCATWAA-----

Original motif Reverse complement motif
Consensus sequence: HHDVGTCGTAAAAHHHD Consensus sequence: DHDHTTTTACGACVDHD


Dataset #: 2 Motif ID: 29 Motif name: Motif 29

Original motif Reverse complement motif
Consensus sequence: AATAACAGATT Consensus sequence: AATCTGTTATT

Best Matches for Motif ID 29 (Highest to Lowest)

Motif ID: UP00186
Motif name: Meis1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0336973

Alignment:
DBWTTGACAGSTBVTW
--AATAACAGATT---

Original motif Reverse complement motif
Consensus sequence: WAVBASCTGTCAAWVH Consensus sequence: DBWTTGACAGSTBVTW


Motif ID: UP00226
Motif name: Mrg1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0361504

Alignment:
BHWTTGACAGSTBBTW
--AATAACAGATT---

Original motif Reverse complement motif
Consensus sequence: WAVBASCTGTCAAWHB Consensus sequence: BHWTTGACAGSTBBTW


Motif ID: UP00122
Motif name: Tgif1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0367255

Alignment:
DBVVAGCTGTCAWWVTH
---AATCTGTTATT---

Original motif Reverse complement motif
Consensus sequence: DABWWTGACAGCTVVBD Consensus sequence: DBVVAGCTGTCAWWVTH


Motif ID: UP00203
Motif name: Pknox1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0373644

Alignment:
VVWTTGACAGSTSBKD
--AATAACAGATT---

Original motif Reverse complement motif
Consensus sequence: DRVSASCTGTCAAWVV Consensus sequence: VVWTTGACAGSTSBKD


Motif ID: UP00258
Motif name: Tgif2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0400385

Alignment:
AABBAGCTGTCAAWVV
---AATCTGTTATT--

Original motif Reverse complement motif
Consensus sequence: AABBAGCTGTCAAWVV Consensus sequence: VBWTTGACAGCTVBTT


Motif ID: UP00166
Motif name: Barhl1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0408157

Alignment:
DDVKTAATTGGTTDTH
-----AATCTGTTATT

Original motif Reverse complement motif
Consensus sequence: HAHAACCAATTARBDH Consensus sequence: DDVKTAATTGGTTDTH


Motif ID: UP00171
Motif name: Msx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.040907

Alignment:
HHVTTAATTKGTTHTV
-----AATCTGTTATT

Original motif Reverse complement motif
Consensus sequence: VAHAACYAATTAABHH Consensus sequence: HHVTTAATTKGTTHTV


Motif ID: UP00109
Motif name: Obox6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0411003

Alignment:
AHAADCGGATTAWHB
AATAACAGATT----

Original motif Reverse complement motif
Consensus sequence: AHAADCGGATTAWHB Consensus sequence: BHWTAATCCGDTTHT


Motif ID: UP00205
Motif name: Pknox2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0430579

Alignment:
VHATTGACAGSKSVTH
--AATAACAGATT---

Original motif Reverse complement motif
Consensus sequence: HAVSRSCTGTCAATHB Consensus sequence: VHATTGACAGSKSVTH


Motif ID: UP00081
Motif name: Mybl1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0431149

Alignment:
HDDDHAACCGTTAHHHD
----AATCTGTTATT--

Original motif Reverse complement motif
Consensus sequence: HDDDHAACCGTTAHHHD Consensus sequence: DHHHTAACGGTTHDHDH


Dataset #: 2 Motif ID: 30 Motif name: Motif 30

Original motif Reverse complement motif
Consensus sequence: CTGTTTTWAT Consensus sequence: ATWAAAACAG

Best Matches for Motif ID 30 (Highest to Lowest)

Motif ID: UP00207
Motif name: Hoxb9
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.030167

Alignment:
VRRGCMATAAAAHHHD
------ATWAAAACAG

Original motif Reverse complement motif
Consensus sequence: VRRGCMATAAAAHHHD Consensus sequence: HDHHTTTTATRGCKMV


Motif ID: UP00213
Motif name: Hoxa9
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0323471

Alignment:
DCGGYCATWAAAWTADW
------ATWAAAACAG-

Original motif Reverse complement motif
Consensus sequence: DCGGYCATWAAAWTADW Consensus sequence: WDTAWTTTWATGKCCGD


Motif ID: UP00134
Motif name: Hoxb13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0362663

Alignment:
VRHCCAATAAAAWHHV
CTGTTTTWAT------

Original motif Reverse complement motif
Consensus sequence: VRHCCAATAAAAWHHV Consensus sequence: VDHWTTTTATTGGDKB


Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0372816

Alignment:
VVVWTTGTTTAMATTWD
----CTGTTTTWAT---

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD


Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0386784

Alignment:
BBVTTTGTTTACATTDD
----CTGTTTTWAT---

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD


Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0390272

Alignment:
HDHYYAATAAAAHHHH
------ATWAAAACAG

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD


Motif ID: UP00025
Motif name: Foxk1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0396761

Alignment:
HDDTGTTKTTKTHHD
--CTGTTTTWAT---

Original motif Reverse complement motif
Consensus sequence: HHHAYAAYAACAHHH Consensus sequence: HDDTGTTKTTKTHHD


Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.0450256

Alignment:
HDDDATTTTATTKVRDB
-CTGTTTTWAT------

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB


Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0451436

Alignment:
ADDDYAWAACAAMAHH
--ATWAAAACAG----

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT


Motif ID: UP00101
Motif name: Sox12_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0452358

Alignment:
DWTHAVAACAATHA
-ATWAAAACAG---

Original motif Reverse complement motif
Consensus sequence: THATTGTTVTHAWH Consensus sequence: DWTHAVAACAATHA


Dataset #: 2 Motif ID: 31 Motif name: Motif 31

Original motif Reverse complement motif
Consensus sequence: ATTCTGTRAAG Consensus sequence: CTTKACAGAAT

Best Matches for Motif ID 31 (Highest to Lowest)

Motif ID: UP00193
Motif name: Rhox11_2205.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.022933

Alignment:
AVDHCGCTGTWAWDVVW
---ATTCTGTRAAG---

Original motif Reverse complement motif
Consensus sequence: AVDHCGCTGTWAWDVVW Consensus sequence: WVVHWTWACAGCGHHVT


Motif ID: UP00186
Motif name: Meis1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0231555

Alignment:
DBWTTGACAGSTBVTW
--CTTKACAGAAT---

Original motif Reverse complement motif
Consensus sequence: WAVBASCTGTCAAWVH Consensus sequence: DBWTTGACAGSTBVTW


Motif ID: UP00258
Motif name: Tgif2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0232158

Alignment:
VBWTTGACAGCTVBTT
--CTTKACAGAAT---

Original motif Reverse complement motif
Consensus sequence: AABBAGCTGTCAAWVV Consensus sequence: VBWTTGACAGCTVBTT


Motif ID: UP00012
Motif name: Bbx_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.023325

Alignment:
HADTTCAWTGAABWD
--ATTCTGTRAAG--

Original motif Reverse complement motif
Consensus sequence: HADTTCAWTGAABWD Consensus sequence: HWBTTCAWTGAADTH


Motif ID: UP00226
Motif name: Mrg1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0239764

Alignment:
BHWTTGACAGSTBBTW
--CTTKACAGAAT---

Original motif Reverse complement motif
Consensus sequence: WAVBASCTGTCAAWHB Consensus sequence: BHWTTGACAGSTBBTW


Motif ID: UP00203
Motif name: Pknox1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.025386

Alignment:
VVWTTGACAGSTSBKD
--CTTKACAGAAT---

Original motif Reverse complement motif
Consensus sequence: DRVSASCTGTCAAWVV Consensus sequence: VVWTTGACAGSTSBKD


Motif ID: UP00193
Motif name: Rhox11_1765.2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0259448

Alignment:
AVDVCGCTGTWAWDVVW
---ATTCTGTRAAG---

Original motif Reverse complement motif
Consensus sequence: AVDVCGCTGTWAWDVVW Consensus sequence: WVVHWTWACAGCGBHBT


Motif ID: UP00205
Motif name: Pknox2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0264392

Alignment:
VHATTGACAGSKSVTH
--CTTKACAGAAT---

Original motif Reverse complement motif
Consensus sequence: HAVSRSCTGTCAATHB Consensus sequence: VHATTGACAGSKSVTH


Motif ID: UP00055
Motif name: Hbp1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0287967

Alignment:
HHDWTSAATGAATDDB
--CTTKACAGAAT---

Original motif Reverse complement motif
Consensus sequence: HHDWTSAATGAATDDB Consensus sequence: VDHATTCATTSAWDDH


Motif ID: UP00210
Motif name: Mrg2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0289027

Alignment:
DBHTTGACAGSTVDTD
--CTTKACAGAAT---

Original motif Reverse complement motif
Consensus sequence: DADBASCTGTCAAHVH Consensus sequence: DBHTTGACAGSTVDTD


Dataset #: 2 Motif ID: 32 Motif name: Motif 32

Original motif Reverse complement motif
Consensus sequence: ATTTAGTAAA Consensus sequence: TTTACTAAAT

Best Matches for Motif ID 32 (Highest to Lowest)

Motif ID: UP00130
Motif name: Lhx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.00271264

Alignment:
VHHWWTTAATTAATTDV
----TTTACTAAAT---

Original motif Reverse complement motif
Consensus sequence: VDAATTAATTAAWWHHB Consensus sequence: VHHWWTTAATTAATTDV


Motif ID: UP00082
Motif name: Zfp187_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.00275365

Alignment:
HWATTAGTACATAV
-ATTTAGTAAA---

Original motif Reverse complement motif
Consensus sequence: BTATGTACTAATWH Consensus sequence: HWATTAGTACATAV


Motif ID: UP00212
Motif name: Lhx5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.00285069

Alignment:
VDHWTTTAATTAATHHV
----TTTACTAAAT---

Original motif Reverse complement motif
Consensus sequence: VDHATTAATTAAAWHHB Consensus sequence: VDHWTTTAATTAATHHV


Motif ID: UP00169
Motif name: Lmx1b
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.00676865

Alignment:
BHDATTAATTAAWWWHB
---ATTTAGTAAA----

Original motif Reverse complement motif
Consensus sequence: VDWWWTTAATTAATDHB Consensus sequence: BHDATTAATTAAWWWHB


Motif ID: UP00177
Motif name: Hoxd12
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.00747245

Alignment:
DHDHTTTTACGACVDHD
-----TTTACTAAAT--

Original motif Reverse complement motif
Consensus sequence: HHDVGTCGTAAAAHHHD Consensus sequence: DHDHTTTTACGACVDHD


Motif ID: UP00135
Motif name: Hoxc12
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0076403

Alignment:
DDVHWTTTACGACCKHH
-----TTTACTAAAT--

Original motif Reverse complement motif
Consensus sequence: HHRGGTCGTAAAWHBDH Consensus sequence: DDVHWTTTACGACCKHH


Motif ID: UP00117
Motif name: Hoxd11
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.00864633

Alignment:
DDDHTTTTACGACVDHH
-----TTTACTAAAT--

Original motif Reverse complement motif
Consensus sequence: HHDVGTCGTAAAAHHHD Consensus sequence: DDDHTTTTACGACVDHH


Motif ID: UP00142
Motif name: Uncx4.1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0100967

Alignment:
CVVBTTAATTAATDHDV
---TTTACTAAAT----

Original motif Reverse complement motif
Consensus sequence: VDHDATTAATTAABVVG Consensus sequence: CVVBTTAATTAATDHDV


Motif ID: UP00235
Motif name: Hoxc11
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.010176

Alignment:
HDHTTTTACGACDTTH
----TTTACTAAAT--

Original motif Reverse complement motif
Consensus sequence: HAADGTCGTAAAAHDD Consensus sequence: HDHTTTTACGACDTTH


Motif ID: UP00246
Motif name: Hoxa11
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0105914

Alignment:
DDDTTTTACGACDTDH
----TTTACTAAAT--

Original motif Reverse complement motif
Consensus sequence: HDADGTCGTAAAAHDD Consensus sequence: DDDTTTTACGACDTDH


Dataset #: 2 Motif ID: 33 Motif name: Motif 33

Original motif Reverse complement motif
Consensus sequence: ATTTATTGCTA Consensus sequence: TAGCAATAAAT

Best Matches for Motif ID 33 (Highest to Lowest)

Motif ID: UP00104
Motif name: Hmx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.00115362

Alignment:
VVVAGCAATTAADGVDB
--TAGCAATAAAT----

Original motif Reverse complement motif
Consensus sequence: VVVAGCAATTAADGVDB Consensus sequence: VDBCDTTAATTGCTBVB


Motif ID: UP00155
Motif name: Hmx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.00544084

Alignment:
VVAAGCAATTAAHVVDT
--TAGCAATAAAT----

Original motif Reverse complement motif
Consensus sequence: VVAAGCAATTAAHVVDT Consensus sequence: ADBVHTTAATTGCTTVB


Motif ID: UP00157
Motif name: Hmx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.00624569

Alignment:
VBVAGCAATTAAHVVAT
--TAGCAATAAAT----

Original motif Reverse complement motif
Consensus sequence: VBVAGCAATTAAHVVAT Consensus sequence: ATBVHTTAATTGCTBBB


Motif ID: UP00263
Motif name: Hoxb8
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.00742166

Alignment:
HVBDGYAATTAATADW
--TAGCAATAAAT---

Original motif Reverse complement motif
Consensus sequence: HVBDGYAATTAATADW Consensus sequence: WDTATTAATTKCHBVH


Motif ID: UP00133
Motif name: Cdx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0101377

Alignment:
DVVGGYMATAAAAHKH
--TAGCAATAAAT---

Original motif Reverse complement motif
Consensus sequence: DVVGGYMATAAAAHKH Consensus sequence: HRHTTTTATYMCCVBD


Motif ID: UP00207
Motif name: Hoxb9
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0107409

Alignment:
VRRGCMATAAAAHHHD
-TAGCAATAAAT----

Original motif Reverse complement motif
Consensus sequence: VRRGCMATAAAAHHHD Consensus sequence: HDHHTTTTATRGCKMV


Motif ID: UP00145
Motif name: Barhl2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0138179

Alignment:
HAMAAHCAATTAABHH
---TAGCAATAAAT--

Original motif Reverse complement motif
Consensus sequence: HAMAAHCAATTAABHH Consensus sequence: HHBTTAATTGDTTYTH


Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 11
Similarity score: 0.0142512

Alignment:
HDTBHHCCHTAGCAACVVDHHHH
---------TAGCAATAAAT---

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH


Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.01435

Alignment:
HDHHTTTTATTKKHDD
----ATTTATTGCTA-

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD


Motif ID: UP00168
Motif name: Hoxd8
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0169109

Alignment:
HADCMATTAATTADTTA
TAGCAATAAAT------

Original motif Reverse complement motif
Consensus sequence: TAADTAATTAATRGHTH Consensus sequence: HADCMATTAATTADTTA


Dataset #: 2 Motif ID: 34 Motif name: Motif 34

Original motif Reverse complement motif
Consensus sequence: TTGCTGCTTTT Consensus sequence: AAAAGCAGCAA

Best Matches for Motif ID 34 (Highest to Lowest)

Motif ID: UP00027
Motif name: Osr1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.00770725

Alignment:
DHBHGCTACKGTHDHH
--TTGCTGCTTTT---

Original motif Reverse complement motif
Consensus sequence: HHDHACRGTAGCHVHD Consensus sequence: DHBHGCTACKGTHDHH


Motif ID: UP00044
Motif name: Mafk_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0113442

Alignment:
MBHTGCADTTTTTHV
--TTGCTGCTTTT--

Original motif Reverse complement motif
Consensus sequence: VHAAAAADTGCAHBR Consensus sequence: MBHTGCADTTTTTHV


Motif ID: UP00052
Motif name: Osr2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0117169

Alignment:
HHHHGCTACKGTHVHH
--TTGCTGCTTTT---

Original motif Reverse complement motif
Consensus sequence: HHVHACRGTAGCHHHD Consensus sequence: HHHHGCTACKGTHVHH


Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0149918

Alignment:
HAAWDTGCTGACDWARH
----TTGCTGCTTTT--

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH


Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0204182

Alignment:
HHHTTRTTDTTTKDH
---TTGCTGCTTTT-

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH


Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0211824

Alignment:
DVBCYTGCTGBGDDD
----TTGCTGCTTTT

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD


Motif ID: UP00145
Motif name: Barhl2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0241392

Alignment:
HHBTTAATTGDTTYTH
----TTGCTGCTTTT-

Original motif Reverse complement motif
Consensus sequence: HAMAAHCAATTAABHH Consensus sequence: HHBTTAATTGDTTYTH


Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0241736

Alignment:
TCDAMVBGACGCMAKDDDVBBD
---AAAAGCAGCAA--------

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD


Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0245177

Alignment:
DVHCCTGCTGBGDDB
----TTGCTGCTTTT

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB


Motif ID: UP00185
Motif name: Pbx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.0245464

Alignment:
BVDWHWTTGATGRKTKH
------TTGCTGCTTTT

Original motif Reverse complement motif
Consensus sequence: HYAYMCATCAAWHWDVV Consensus sequence: BVDWHWTTGATGRKTKH


Dataset #: 2 Motif ID: 35 Motif name: Motif 35

Original motif Reverse complement motif
Consensus sequence: TTGTTGATTTT Consensus sequence: AAAATCAACAA

Best Matches for Motif ID 35 (Highest to Lowest)

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0

Alignment:
DWAATRTAAACAAWVVB
--AAAATCAACAA----

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD


Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.00256455

Alignment:
DDAATGTAAACAAAVVB
--AAAATCAACAA----

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD


Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.00497188

Alignment:
HDHADGTAAACAAAVVH
--AAAATCAACAA----

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH


Motif ID: UP00227
Motif name: Duxl
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.00721745

Alignment:
VHVVGTTGATTGGGTMK
--TTGTTGATTTT----

Original motif Reverse complement motif
Consensus sequence: YRACCCAATCAACVVHV Consensus sequence: VHVVGTTGATTGGGTMK


Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0101946

Alignment:
HHHTTRTTDTTTKDH
---TTGTTGATTTT-

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH


Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0135831

Alignment:
HHWAWGTAAAYAAAVDB
--AAAATCAACAA----

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH


Motif ID: UP00145
Motif name: Barhl2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0139419

Alignment:
HAMAAHCAATTAABHH
-AAAATCAACAA----

Original motif Reverse complement motif
Consensus sequence: HAMAAHCAATTAABHH Consensus sequence: HHBTTAATTGDTTYTH


Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0164816

Alignment:
HDHRTAAACAAAHDDD
AAAATCAACAA-----

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH


Motif ID: UP00025
Motif name: Foxk1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0220198

Alignment:
HDDTGTTKTTKTHHD
--TTGTTGATTTT--

Original motif Reverse complement motif
Consensus sequence: HHHAYAAYAACAHHH Consensus sequence: HDDTGTTKTTKTHHD


Motif ID: UP00067
Motif name: Lef1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0242838

Alignment:
DHVDTGATTGATVBDV
----TTGTTGATTTT-

Original motif Reverse complement motif
Consensus sequence: VDVVATCAATCAHBHD Consensus sequence: DHVDTGATTGATVBDV


Dataset #: 2 Motif ID: 36 Motif name: Motif 36

Original motif Reverse complement motif
Consensus sequence: TTACWGTTT Consensus sequence: AAACWGTAA

Best Matches for Motif ID 36 (Highest to Lowest)

Motif ID: UP00052
Motif name: Osr2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 9
Similarity score: 0.0202622

Alignment:
HHVHACRGTAGCHHHD
--AAACWGTAA-----

Original motif Reverse complement motif
Consensus sequence: HHVHACRGTAGCHHHD Consensus sequence: HHHHGCTACKGTHVHH


Motif ID: UP00027
Motif name: Osr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 9
Similarity score: 0.0205632

Alignment:
HHDHACRGTAGCHVHD
--AAACWGTAA-----

Original motif Reverse complement motif
Consensus sequence: HHDHACRGTAGCHVHD Consensus sequence: DHBHGCTACKGTHDHH


Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 9
Similarity score: 0.0212082

Alignment:
HHWAWGTAAAYAAAVDB
--------TTACWGTTT

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH


Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 9
Similarity score: 0.0213447

Alignment:
VVVWTTGTTTAMATTWD
--------TTACWGTTT

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD


Motif ID: UP00081
Motif name: Mybl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 9
Similarity score: 0.0237771

Alignment:
DHHHTAACGGTTHDHDH
----TTACWGTTT----

Original motif Reverse complement motif
Consensus sequence: HDDDHAACCGTTAHHHD Consensus sequence: DHHHTAACGGTTHDHDH


Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 9
Similarity score: 0.0240192

Alignment:
BBVTTTGTTTACATTDD
--------TTACWGTTT

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD


Motif ID: UP00186
Motif name: Meis1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 9
Similarity score: 0.0245505

Alignment:
DBWTTGACAGSTBVTW
----TTACWGTTT---

Original motif Reverse complement motif
Consensus sequence: WAVBASCTGTCAAWVH Consensus sequence: DBWTTGACAGSTBVTW


Motif ID: UP00092
Motif name: Myb_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 9
Similarity score: 0.0258406

Alignment:
HDDDHAACCGTTAHHHD
----AAACWGTAA----

Original motif Reverse complement motif
Consensus sequence: HDDDHAACCGTTAHHHD Consensus sequence: DHHHTAACGGTTHHHDH


Motif ID: UP00226
Motif name: Mrg1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 9
Similarity score: 0.0267732

Alignment:
BHWTTGACAGSTBBTW
----TTACWGTTT---

Original motif Reverse complement motif
Consensus sequence: WAVBASCTGTCAAWHB Consensus sequence: BHWTTGACAGSTBBTW


Motif ID: UP00203
Motif name: Pknox1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 9
Similarity score: 0.0277187

Alignment:
VVWTTGACAGSTSBKD
----TTACWGTTT---

Original motif Reverse complement motif
Consensus sequence: DRVSASCTGTCAAWVV Consensus sequence: VVWTTGACAGSTSBKD


Dataset #: 2 Motif ID: 37 Motif name: Motif 37

Original motif Reverse complement motif
Consensus sequence: TTTAATGTYTTTWA Consensus sequence: TWAAAKACATTAAA

Best Matches for Motif ID 37 (Highest to Lowest)

Motif ID: UP00171
Motif name: Msx3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0143635

Alignment:
HHVTTAATTKGTTHTV
--TTTAATGTYTTTWA

Original motif Reverse complement motif
Consensus sequence: VAHAACYAATTAABHH Consensus sequence: HHVTTAATTKGTTHTV


Motif ID: UP00145
Motif name: Barhl2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0149596

Alignment:
HHBTTAATTGDTTYTH
--TTTAATGTYTTTWA

Original motif Reverse complement motif
Consensus sequence: HAMAAHCAATTAABHH Consensus sequence: HHBTTAATTGDTTYTH


Motif ID: UP00170
Motif name: Isl2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0226802

Alignment:
HWDTTAATYKMTTHHR
--TTTAATGTYTTTWA

Original motif Reverse complement motif
Consensus sequence: MHHAAYYMATTAADWH Consensus sequence: HWDTTAATYKMTTHHR


Motif ID: UP00119
Motif name: Nkx2-9
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0229232

Alignment:
HDTTBAAGTACTTDAAA
---TWAAAKACATTAAA

Original motif Reverse complement motif
Consensus sequence: TTTDAAGTACTTVAADH Consensus sequence: HDTTBAAGTACTTDAAA


Motif ID: UP00216
Motif name: Obox1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0255021

Alignment:
DHDGTTAATCCCCKTDD
TWAAAKACATTAAA---

Original motif Reverse complement motif
Consensus sequence: DDARGGGGATTAACDHH Consensus sequence: DHDGTTAATCCCCKTDD


Motif ID: UP00051
Motif name: Sox8_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0266643

Alignment:
DDATBWATTGTTHHDDD
---TTTAATGTYTTTWA

Original motif Reverse complement motif
Consensus sequence: DDATBWATTGTTHHDDD Consensus sequence: DDDHDAACAATWBATDD


Motif ID: UP00091
Motif name: Sox5_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0288082

Alignment:
DHDDWATTGTTCDDHD
--TTTAATGTYTTTWA

Original motif Reverse complement motif
Consensus sequence: DHDDGAACAATWDDHD Consensus sequence: DHDDWATTGTTCDDHD


Motif ID: UP00096
Motif name: Sox13_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0301291

Alignment:
WHDWWATTGTTCKDHD
--TTTAATGTYTTTWA

Original motif Reverse complement motif
Consensus sequence: DHDRGAACAATWWDHW Consensus sequence: WHDWWATTGTTCKDHD


Motif ID: UP00166
Motif name: Barhl1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0303352

Alignment:
DDVKTAATTGGTTDTH
--TTTAATGTYTTTWA

Original motif Reverse complement motif
Consensus sequence: HAHAACCAATTARBDH Consensus sequence: DDVKTAATTGGTTDTH


Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 14
Similarity score: 0.0304836

Alignment:
BDHDDADAGATAAGADHBDHVD
-TWAAAKACATTAAA-------

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Dataset #: 2 Motif ID: 38 Motif name: Motif 38

Original motif Reverse complement motif
Consensus sequence: AAAGATGA Consensus sequence: TCATCTTT

Best Matches for Motif ID 38 (Highest to Lowest)

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0235901

Alignment:
HBHDVHDTCTTATCTHTDDHDV
---------TCATCTTT-----

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00048
Motif name: Rara
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0248583

Alignment:
HHVGTGACCTTTDVDD
----TCATCTTT----

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCACVHD Consensus sequence: HHVGTGACCTTTDVDD


Motif ID: UP00009
Motif name: Nr2f2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0320787

Alignment:
BHVDTGACCTTTDVDD
----TCATCTTT----

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCAHVHB Consensus sequence: BHVDTGACCTTTDVDD


Motif ID: UP00114
Motif name: Homez
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0353395

Alignment:
HDTVAAAACGATRWWHT
------AAAGATGA---

Original motif Reverse complement motif
Consensus sequence: AHWWMATCGTTTTBADD Consensus sequence: HDTVAAAACGATRWWHT


Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0375145

Alignment:
VBBDMYCATCTGVHHBH
-----TCATCTTT----

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH


Motif ID: UP00100
Motif name: Gata6_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0391681

Alignment:
VHDDTCTTATCWHBDHD
------TCATCTTT---

Original motif Reverse complement motif
Consensus sequence: DHDVDWGATAAGADDHV Consensus sequence: VHDDTCTTATCWHBDHD


Motif ID: UP00419
Motif name: Spic
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0437411

Alignment:
VAAAGMGGAAGTWD
-AAAGATGA-----

Original motif Reverse complement motif
Consensus sequence: VAAAGMGGAAGTWD Consensus sequence: DWACTTCCRCTTTB


Motif ID: UP00199
Motif name: Six4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0467222

Alignment:
BBVHVGGTGTCATHDDT
---------TCATCTTT

Original motif Reverse complement motif
Consensus sequence: ADDHATGACACCBHBBV Consensus sequence: BBVHVGGTGTCATHDDT


Motif ID: UP00219
Motif name: Cutl1_3494.2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0483168

Alignment:
DAVTGATRATCAHTD
-AAAGATGA------

Original motif Reverse complement motif
Consensus sequence: DAVTGATRATCAHTD Consensus sequence: DADTGATMATCABTD


Motif ID: UP00208
Motif name: Obox5_3963.2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0488248

Alignment:
VRVAGGGATTAAHTVWV
---AAAGATGA------

Original motif Reverse complement motif
Consensus sequence: VRVAGGGATTAAHTVWV Consensus sequence: VWBAHTTAATCCCTVKB


Dataset #: 2 Motif ID: 39 Motif name: Motif 39

Original motif Reverse complement motif
Consensus sequence: AGATGYTCTTG Consensus sequence: CAAGAKCATCT

Best Matches for Motif ID 39 (Highest to Lowest)

Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0140765

Alignment:
DHDBCAAGGTCAHVBDH
----CAAGAKCATCT--

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD


Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.0175222

Alignment:
HVDDVCAGATGKYHBBV
------AGATGYTCTTG

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH


Motif ID: UP00019
Motif name: Zbtb12_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0209646

Alignment:
BDHRBGTTCTAGATCVB
-AGATGYTCTTG-----

Original motif Reverse complement motif
Consensus sequence: BDHRBGTTCTAGATCVB Consensus sequence: BBGATCTAGAACBKHDB


Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.0302699

Alignment:
BBYVVCAGCTGCBVHHD
------AGATGYTCTTG

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB


Motif ID: UP00048
Motif name: Rara
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0317546

Alignment:
DHBHAAAGGTCACVHD
----CAAGAKCATCT-

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCACVHD Consensus sequence: HHVGTGACCTTTDVDD


Motif ID: UP00025
Motif name: Foxk1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0329048

Alignment:
HHHAYAAYAACAHHH
AGATGYTCTTG----

Original motif Reverse complement motif
Consensus sequence: HHHAYAAYAACAHHH Consensus sequence: HDDTGTTKTTKTHHD


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 11
Similarity score: 0.0350601

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
--------AGATGYTCTTG----

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0366699

Alignment:
HBHDVBWGATHBTATCRVBHHH
------AGATGYTCTTG-----

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH


Motif ID: UP00047
Motif name: Zbtb7b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0367981

Alignment:
BBDVHGGTGGTCBKDDB
----AGATGYTCTTG--

Original motif Reverse complement motif
Consensus sequence: BDDRVGACCACCHBDVB Consensus sequence: BBDVHGGTGGTCBKDDB


Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.038145

Alignment:
HTBVVVDGGACCACCCRGRDBG
-----CAAGAKCATCT------

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH


Dataset #: 2 Motif ID: 40 Motif name: Motif 40

Original motif Reverse complement motif
Consensus sequence: TGGTGTCA Consensus sequence: TGACACCA

Best Matches for Motif ID 40 (Highest to Lowest)

Motif ID: UP00199
Motif name: Six4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0

Alignment:
BBVHVGGTGTCATHDDT
----TGGTGTCA-----

Original motif Reverse complement motif
Consensus sequence: ADDHATGACACCBHBBV Consensus sequence: BBVHVGGTGTCATHDDT


Motif ID: UP00388
Motif name: Six6_2267.4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0335611

Alignment:
AHWDHTGATACCCKATD
-----TGACACCA----

Original motif Reverse complement motif
Consensus sequence: DATRGGGTATCAHDWHT Consensus sequence: AHWDHTGATACCCKATD


Motif ID: UP00159
Motif name: Six2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0342894

Alignment:
AHWDGTGATACCCMRTD
-----TGACACCA----

Original motif Reverse complement motif
Consensus sequence: DAKRGGGTATCACDWHT Consensus sequence: AHWDGTGATACCCMRTD


Motif ID: UP00053
Motif name: Rxra_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.034602

Alignment:
DBHBDTGACCCCDHVHB
-----TGACACCA----

Original motif Reverse complement motif
Consensus sequence: DBHBDTGACCCCDHVHB Consensus sequence: VHBHDGGGGTCAHBHBD


Motif ID: UP00079
Motif name: Esrra_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0349175

Alignment:
VKBBAGGGGTCAHDBBH
----TGGTGTCA-----

Original motif Reverse complement motif
Consensus sequence: VKBBAGGGGTCAHDBBH Consensus sequence: DBBHHTGACCCCTBBYV


Motif ID: UP00122
Motif name: Tgif1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0354712

Alignment:
DBVVAGCTGTCAWWVTH
----TGGTGTCA-----

Original motif Reverse complement motif
Consensus sequence: DABWWTGACAGCTVVBD Consensus sequence: DBVVAGCTGTCAWWVTH


Motif ID: UP00192
Motif name: Six1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0355547

Alignment:
AVHDHTGATACCCMDHH
-----TGACACCA----

Original motif Reverse complement motif
Consensus sequence: DHDRGGGTATCAHDHBT Consensus sequence: AVHDHTGATACCCMDHH


Motif ID: UP00388
Motif name: Six6_2267.5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.035579

Alignment:
AHWHWTGATACCCKDDD
-----TGACACCA----

Original motif Reverse complement motif
Consensus sequence: DDDRGGGTATCAWHWHT Consensus sequence: AHWHWTGATACCCKDDD


Motif ID: UP00068
Motif name: Eomes_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0362156

Alignment:
BVHDAGGTGTGAAAHHH
----TGGTGTCA-----

Original motif Reverse complement motif
Consensus sequence: BVHDAGGTGTGAAAHHH Consensus sequence: HHHTTTCACACCTDHBV


Motif ID: UP00258
Motif name: Tgif2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0373826

Alignment:
VBWTTGACAGCTVBTT
----TGACACCA----

Original motif Reverse complement motif
Consensus sequence: AABBAGCTGTCAAWVV Consensus sequence: VBWTTGACAGCTVBTT


Dataset #: 2 Motif ID: 41 Motif name: Motif 41

Original motif Reverse complement motif
Consensus sequence: ACTTTGG Consensus sequence: CCAAAGT

Best Matches for Motif ID 41 (Highest to Lowest)

Motif ID: UP00066
Motif name: Hnf4a_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 7
Similarity score: 0

Alignment:
BBHHAAAGTCCAMTHH
--CCAAAGT-------

Original motif Reverse complement motif
Consensus sequence: BBHHAAAGTCCAMTHH Consensus sequence: HHAYTGGACTTTHDBV


Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 7
Similarity score: 0.0128381

Alignment:
VDDAGATCAAAGGKDDD
------CCAAAGT----

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD


Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 7
Similarity score: 0.0140846

Alignment:
DHDBCAAGGTCAHVBDH
---CCAAAGT-------

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD


Motif ID: UP00083
Motif name: Tcf7l2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0.0141156

Alignment:
BDDASATCAAAGGMDDD
------CCAAAGT----

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATSTDDV Consensus sequence: BDDASATCAAAGGMDDD


Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.0159798

Alignment:
HHBBMCTTTGTTHDDBH
----ACTTTGG------

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH


Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.0181605

Alignment:
HHBTMCTTTGTTMDDVH
----ACTTTGG------

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH


Motif ID: UP00058
Motif name: Tcf3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.0200761

Alignment:
HHHKVCTTTGATSTHHH
----ACTTTGG------

Original motif Reverse complement motif
Consensus sequence: HHHASATCAAAGVRHHH Consensus sequence: HHHKVCTTTGATSTHHH


Motif ID: UP00054
Motif name: Tcf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.0230245

Alignment:
HHHTCCTTTGATSTHHV
----ACTTTGG------

Original motif Reverse complement motif
Consensus sequence: BHHASATCAAAGGAHHH Consensus sequence: HHHTCCTTTGATSTHHV


Motif ID: UP00413
Motif name: Elf4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0.0283328

Alignment:
HAWYCCGGAAGTHBBD
-----CCAAAGT----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGKWTH Consensus sequence: HAWYCCGGAAGTHBBD


Motif ID: UP00418
Motif name: Etv6
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0287289

Alignment:
BHAHCCGGAAGTABDVD
-----CCAAAGT-----

Original motif Reverse complement motif
Consensus sequence: DVHBTACTTCCGGHTHB Consensus sequence: BHAHCCGGAAGTABDVD


Dataset #: 2 Motif ID: 42 Motif name: Motif 42

Original motif Reverse complement motif
Consensus sequence: ATKAYTTTG Consensus sequence: CAAAKTYAT

Best Matches for Motif ID 42 (Highest to Lowest)

Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 9
Similarity score: 0.0159205

Alignment:
HHBVHTGACCTTGVDHD
----ATKAYTTTG----

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD


Motif ID: UP00054
Motif name: Tcf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 0.0182772

Alignment:
HHHTCCTTTGATSTHHV
-ATKAYTTTG-------

Original motif Reverse complement motif
Consensus sequence: BHHASATCAAAGGAHHH Consensus sequence: HHHTCCTTTGATSTHHV


Motif ID: UP00058
Motif name: Tcf3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 0.01865

Alignment:
HHHKVCTTTGATSTHHH
-ATKAYTTTG-------

Original motif Reverse complement motif
Consensus sequence: HHHASATCAAAGVRHHH Consensus sequence: HHHKVCTTTGATSTHHH


Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 9
Similarity score: 0.0192718

Alignment:
HHBBMCTTTGTTHDDBH
-ATKAYTTTG-------

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH


Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 0.022524

Alignment:
HHBTMCTTTGTTMDDVH
-ATKAYTTTG-------

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH


Motif ID: UP00200
Motif name: Nkx6-1_2825.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 9
Similarity score: 0.0239738

Alignment:
DVHAATTAATTAMYBBG
--------ATKAYTTTG

Original motif Reverse complement motif
Consensus sequence: DVHAATTAATTAMYBBG Consensus sequence: CBVMRTAATTAATTHBH


Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 9
Similarity score: 0.0240474

Alignment:
VDDAGATCAAAGGKDDD
-------CAAAKTYAT-

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD


Motif ID: UP00083
Motif name: Tcf7l2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 0.0253434

Alignment:
DDDYCCTTTGATSTDDV
-ATKAYTTTG-------

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATSTDDV Consensus sequence: BDDASATCAAAGGMDDD


Motif ID: UP00167
Motif name: En1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 9
Similarity score: 0.0259902

Alignment:
VHRKTAATTAGTTVVV
------ATKAYTTTG-

Original motif Reverse complement motif
Consensus sequence: VVVAACTAATTARKDV Consensus sequence: VHRKTAATTAGTTVVV


Motif ID: UP00238
Motif name: Nkx6-3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 9
Similarity score: 0.0262036

Alignment:
DVHWATTAATTAVTBBB
--------ATKAYTTTG

Original motif Reverse complement motif
Consensus sequence: DVHWATTAATTAVTBBB Consensus sequence: BVVAVTAATTAATWHBH


Dataset #: 2 Motif ID: 43 Motif name: Motif 43

Original motif Reverse complement motif
Consensus sequence: GCTGTGAC Consensus sequence: GTCACAGC

Best Matches for Motif ID 43 (Highest to Lowest)

Motif ID: UP00122
Motif name: Tgif1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0

Alignment:
DABWWTGACAGCTVVBD
----GTCACAGC-----

Original motif Reverse complement motif
Consensus sequence: DABWWTGACAGCTVVBD Consensus sequence: DBVVAGCTGTCAWWVTH


Motif ID: UP00258
Motif name: Tgif2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00241817

Alignment:
AABBAGCTGTCAAWVV
-----GCTGTGAC---

Original motif Reverse complement motif
Consensus sequence: AABBAGCTGTCAAWVV Consensus sequence: VBWTTGACAGCTVBTT


Motif ID: UP00006
Motif name: Zic3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.00553853

Alignment:
DDDCACAGCAKGHVD
-GTCACAGC------

Original motif Reverse complement motif
Consensus sequence: DDDCACAGCAKGHVD Consensus sequence: DVHCYTGCTGTGHDH


Motif ID: UP00068
Motif name: Eomes_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.00578189

Alignment:
BVHDAGGTGTGAAAHHH
-----GCTGTGAC----

Original motif Reverse complement motif
Consensus sequence: BVHDAGGTGTGAAAHHH Consensus sequence: HHHTTTCACACCTDHBV


Motif ID: UP00193
Motif name: Rhox11_2205.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.00629536

Alignment:
AVDHCGCTGTWAWDVVW
-----GCTGTGAC----

Original motif Reverse complement motif
Consensus sequence: AVDHCGCTGTWAWDVVW Consensus sequence: WVVHWTWACAGCGHHVT


Motif ID: UP00193
Motif name: Rhox11_1765.2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.00666342

Alignment:
AVDVCGCTGTWAWDVVW
-----GCTGTGAC----

Original motif Reverse complement motif
Consensus sequence: AVDVCGCTGTWAWDVVW Consensus sequence: WVVHWTWACAGCGBHBT


Motif ID: UP00205
Motif name: Pknox2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00747692

Alignment:
HAVSRSCTGTCAATHB
-----GCTGTGAC---

Original motif Reverse complement motif
Consensus sequence: HAVSRSCTGTCAATHB Consensus sequence: VHATTGACAGSKSVTH


Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.00877453

Alignment:
BHDCVCAGCAGGHVD
-GTCACAGC------

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB


Motif ID: UP00186
Motif name: Meis1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.00956623

Alignment:
WAVBASCTGTCAAWVH
-----GCTGTGAC---

Original motif Reverse complement motif
Consensus sequence: WAVBASCTGTCAAWVH Consensus sequence: DBWTTGACAGSTBVTW


Motif ID: UP00226
Motif name: Mrg1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0124611

Alignment:
WAVBASCTGTCAAWHB
-----GCTGTGAC---

Original motif Reverse complement motif
Consensus sequence: WAVBASCTGTCAAWHB Consensus sequence: BHWTTGACAGSTBBTW


Dataset #: 2 Motif ID: 44 Motif name: Motif 44

Original motif Reverse complement motif
Consensus sequence: AAGTTCA Consensus sequence: TGAACTT

Best Matches for Motif ID 44 (Highest to Lowest)

Motif ID: UP00048
Motif name: Rara
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0

Alignment:
DHBHAAAGGTCACVHD
-----AAGTTCA----

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCACVHD Consensus sequence: HHVGTGACCTTTDVDD


Motif ID: UP00066
Motif name: Hnf4a_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.00516503

Alignment:
HHAYTGGACTTTHDBV
----TGAACTT-----

Original motif Reverse complement motif
Consensus sequence: BBHHAAAGTCCAMTHH Consensus sequence: HHAYTGGACTTTHDBV


Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00773155

Alignment:
DHDBCAAGGTCAHVBDH
-----AAGTTCA-----

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD


Motif ID: UP00009
Motif name: Nr2f2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0.00909243

Alignment:
DHBHAAAGGTCAHVHB
-----AAGTTCA----

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCAHVHB Consensus sequence: BHVDTGACCTTTDVDD


Motif ID: UP00019
Motif name: Zbtb12_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.035752

Alignment:
BBGATCTAGAACBKHDB
-------TGAACTT---

Original motif Reverse complement motif
Consensus sequence: BDHRBGTTCTAGATCVB Consensus sequence: BBGATCTAGAACBKHDB


Motif ID: UP00222
Motif name: Tcf2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0379796

Alignment:
ABDBCTAGTTAACVBBD
-----AAGTTCA-----

Original motif Reverse complement motif
Consensus sequence: DBBBGTTAACTAGBHBT Consensus sequence: ABDBCTAGTTAACVBBD


Motif ID: UP00042
Motif name: Gm397_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0.0388625

Alignment:
HHRTATGTGCACATHHD
----AAGTTCA------

Original motif Reverse complement motif
Consensus sequence: HHDATGTGCACATAMDH Consensus sequence: HHRTATGTGCACATHHD


Motif ID: UP00413
Motif name: Elf4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0421261

Alignment:
DBBHACTTCCGGKWTH
-TGAACTT--------

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGKWTH Consensus sequence: HAWYCCGGAAGTHBBD


Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 7
Similarity score: 0.0424658

Alignment:
DDDYCCTTTGATCTDDV
--------TGAACTT--

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD


Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.0427674

Alignment:
HDHTMTGTGCACADVHD
----AAGTTCA------

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD


Dataset #: 2 Motif ID: 45 Motif name: Motif 45

Original motif Reverse complement motif
Consensus sequence: TGGAGGAAA Consensus sequence: TTTCCTCCA

Best Matches for Motif ID 45 (Highest to Lowest)

Motif ID: UP00043
Motif name: Bcl6b_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 9
Similarity score: 0

Alignment:
DCTTTCKAGGAATHHV
----TGGAGGAAA---

Original motif Reverse complement motif
Consensus sequence: DCTTTCKAGGAATHHV Consensus sequence: VHHATTCCTYGAAAGD


Motif ID: UP00409
Motif name: Elf5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 9
Similarity score: 0.0103598

Alignment:
BWAHSMGGAAGTWD
--TGGAGGAAA---

Original motif Reverse complement motif
Consensus sequence: BWAHSMGGAAGTWD Consensus sequence: DWACTTCCRSDTWV


Motif ID: UP00090
Motif name: Elf3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 9
Similarity score: 0.0126625

Alignment:
DAHMMGGAARTDA
-TGGAGGAAA---

Original motif Reverse complement motif
Consensus sequence: DAHMMGGAARTDA Consensus sequence: TDAMTTCCYYDTD


Motif ID: UP00085
Motif name: Sfpi1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 9
Similarity score: 0.0131092

Alignment:
BDAWGVGGAAGTDH
--TGGAGGAAA---

Original motif Reverse complement motif
Consensus sequence: BDAWGVGGAAGTDH Consensus sequence: HDACTTCCBCWTDV


Motif ID: UP00055
Motif name: Hbp1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 9
Similarity score: 0.0140163

Alignment:
HHDWTSAATGAATDDB
----TGGAGGAAA---

Original motif Reverse complement motif
Consensus sequence: HHDWTSAATGAATDDB Consensus sequence: VDHATTCATTSAWDDH


Motif ID: UP00021
Motif name: Zfp281_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 9
Similarity score: 0.0142598

Alignment:
DKKWDACCCCCAHTDDV
---TTTCCTCCA-----

Original motif Reverse complement motif
Consensus sequence: DKKWDACCCCCAHTDDV Consensus sequence: VDDAHTGGGGGTHWYYD


Motif ID: UP00208
Motif name: Obox5_2284.1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 9
Similarity score: 0.0161902

Alignment:
DHHAHTTAATCCCKVDH
----TTTCCTCCA----

Original motif Reverse complement motif
Consensus sequence: HDVRGGGATTAAHTHHH Consensus sequence: DHHAHTTAATCCCKVDH


Motif ID: UP00419
Motif name: Spic
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 9
Similarity score: 0.0168157

Alignment:
VAAAGMGGAAGTWD
--TGGAGGAAA---

Original motif Reverse complement motif
Consensus sequence: VAAAGMGGAAGTWD Consensus sequence: DWACTTCCRCTTTB


Motif ID: UP00208
Motif name: Obox5_3963.2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 9
Similarity score: 0.0175071

Alignment:
VWBAHTTAATCCCTVKB
----TTTCCTCCA----

Original motif Reverse complement motif
Consensus sequence: VRVAGGGATTAAHTVWV Consensus sequence: VWBAHTTAATCCCTVKB


Motif ID: UP00082
Motif name: Zfp187_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 9
Similarity score: 0.017867

Alignment:
HWATTAGTACATAV
--TTTCCTCCA---

Original motif Reverse complement motif
Consensus sequence: BTATGTACTAATWH Consensus sequence: HWATTAGTACATAV


Dataset #: 2 Motif ID: 46 Motif name: Motif 46

Original motif Reverse complement motif
Consensus sequence: TGAATGAA Consensus sequence: TTCATTCA

Best Matches for Motif ID 46 (Highest to Lowest)

Motif ID: UP00055
Motif name: Hbp1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0

Alignment:
HHDWTSAATGAATDDB
----TGAATGAA----

Original motif Reverse complement motif
Consensus sequence: HHDWTSAATGAATDDB Consensus sequence: VDHATTCATTSAWDDH


Motif ID: UP00118
Motif name: Pou4f3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0420896

Alignment:
HVTTATTAATKADKHC
-----TGAATGAA---

Original motif Reverse complement motif
Consensus sequence: HVTTATTAATKADKHC Consensus sequence: GHYHTYATTAATAAVH


Motif ID: UP00237
Motif name: Otp
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0426251

Alignment:
CHDMTTAATTAAKDHVV
----TTCATTCA-----

Original motif Reverse complement motif
Consensus sequence: VVHDRTTAATTAAYDDG Consensus sequence: CHDMTTAATTAAKDHVV


Motif ID: UP00130
Motif name: Lhx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0427891

Alignment:
VHHWWTTAATTAATTDV
-----TTCATTCA----

Original motif Reverse complement motif
Consensus sequence: VDAATTAATTAAWWHHB Consensus sequence: VHHWWTTAATTAATTDV


Motif ID: UP00212
Motif name: Lhx5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.044202

Alignment:
VDHWTTTAATTAATHHV
-----TTCATTCA----

Original motif Reverse complement motif
Consensus sequence: VDHATTAATTAAAWHHB Consensus sequence: VDHWTTTAATTAATHHV


Motif ID: UP00012
Motif name: Bbx_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0451439

Alignment:
HWBTTCAWTGAADTH
---TTCATTCA----

Original motif Reverse complement motif
Consensus sequence: HADTTCAWTGAABWD Consensus sequence: HWBTTCAWTGAADTH


Motif ID: UP00142
Motif name: Uncx4.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0455949

Alignment:
CVVBTTAATTAATDHDV
----TGAATGAA-----

Original motif Reverse complement motif
Consensus sequence: VDHDATTAATTAABVVG Consensus sequence: CVVBTTAATTAATDHDV


Motif ID: UP00172
Motif name: Prop1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0460946

Alignment:
GDDDBTTAATTAABBVV
-----TTCATTCA----

Original motif Reverse complement motif
Consensus sequence: VVVVTTAATTAABDDDC Consensus sequence: GDDDBTTAATTAABBVV


Motif ID: UP00169
Motif name: Lmx1b
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.048175

Alignment:
BHDATTAATTAAWWWHB
----TGAATGAA-----

Original motif Reverse complement motif
Consensus sequence: VDWWWTTAATTAATDHB Consensus sequence: BHDATTAATTAAWWWHB


Motif ID: UP00149
Motif name: Phox2b
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0491281

Alignment:
CBDVTTAATTAATTBVV
----TTCATTCA-----

Original motif Reverse complement motif
Consensus sequence: VVBAATTAATTAABDBG Consensus sequence: CBDVTTAATTAATTBVV


Dataset #: 2 Motif ID: 47 Motif name: Motif 47

Original motif Reverse complement motif
Consensus sequence: AAKGAAAGGCA Consensus sequence: TGCCTTTCYTT

Best Matches for Motif ID 47 (Highest to Lowest)

Motif ID: UP00074
Motif name: Isgf3g_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.012358

Alignment:
TDAGTTTCGWTTKDV
TGCCTTTCYTT----

Original motif Reverse complement motif
Consensus sequence: VDRAAWCGAAACTDA Consensus sequence: TDAGTTTCGWTTKDV


Motif ID: UP00083
Motif name: Tcf7l2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.014351

Alignment:
BDDASATCAAAGGMDDD
----AAKGAAAGGCA--

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATSTDDV Consensus sequence: BDDASATCAAAGGMDDD


Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.015991

Alignment:
VDDAGATCAAAGGKDDD
----AAKGAAAGGCA--

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD


Motif ID: UP00054
Motif name: Tcf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0221257

Alignment:
BHHASATCAAAGGAHHH
----AAKGAAAGGCA--

Original motif Reverse complement motif
Consensus sequence: BHHASATCAAAGGAHHH Consensus sequence: HHHTCCTTTGATSTHHV


Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0233703

Alignment:
HHBTMCTTTGTTMDDVH
--TGCCTTTCYTT----

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH


Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0234975

Alignment:
HHBBMCTTTGTTHDDBH
--TGCCTTTCYTT----

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH


Motif ID: UP00058
Motif name: Tcf3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0239255

Alignment:
HHHASATCAAAGVRHHH
----AAKGAAAGGCA--

Original motif Reverse complement motif
Consensus sequence: HHHASATCAAAGVRHHH Consensus sequence: HHHKVCTTTGATSTHHH


Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0239781

Alignment:
DHDBCAAGGTCAHVBDH
-AAKGAAAGGCA-----

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD


Motif ID: UP00044
Motif name: Mafk_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0264082

Alignment:
MBHTGCADTTTTTHV
---TGCCTTTCYTT-

Original motif Reverse complement motif
Consensus sequence: VHAAAAADTGCAHBR Consensus sequence: MBHTGCADTTTTTHV


Motif ID: UP00217
Motif name: Hoxa10
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0273937

Alignment:
DHBGYAATAAAATDHW
-----AAKGAAAGGCA

Original motif Reverse complement motif
Consensus sequence: DHBGYAATAAAATDHW Consensus sequence: WDDATTTTATTMCBHD


Dataset #: 2 Motif ID: 48 Motif name: Motif 48

Original motif Reverse complement motif
Consensus sequence: AATGKAAGAA Consensus sequence: TTCTTYCATT

Best Matches for Motif ID 48 (Highest to Lowest)

Motif ID: UP00082
Motif name: Zfp187_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0293208

Alignment:
BTATGTACTAATWH
-AATGKAAGAA---

Original motif Reverse complement motif
Consensus sequence: BTATGTACTAATWH Consensus sequence: HWATTAGTACATAV


Motif ID: UP00055
Motif name: Hbp1_primary
Species: Mus musculus