**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.1 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 5 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Phylogenetic tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # MEME-ChIP_DM05.txt 4 1 MEME_DM05.txt 46 2 PScanChIP_DM05.txt 16 3 RSAT_peak-motifs_DM05.txt 17 4 W-ChIPMotifs_DM05.txt 11 5 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** *************************************************************** Combined Motifs for Top Best Match Motif ID 1 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 CTCF Original Motif Reverse Complement YGCCACCTDSTGGY BMSMGCCYMCTKSTGGMHM HMCGCCMCCTDSTGGHBMS Direction: Backward Position #: 3 Overlap #: 14 Alignment: ---YGCCACCTDSTGGY-- BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif HMCGCCMCCTDSTGGHBMS CAGTGCTCCACTGTGBT CHVYGCYCCMYTGTGGTBMS Direction: Forward Position #: 2 Overlap #: 16 Alignment: -HMCGCCMCCTDSTGGHBMS CAGTGCTCCACTGTGBT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Reverse Complement SYVACCACAKYGGKGCMVHG AGTGCTCCACTGTGDTG AGBBCWCCACWGTGGTGCMVHG Direction: Forward Position #: 3 Overlap #: 15 Alignment: --SYVACCACAKYGGKGCMVHG AGTGCTCCACTGTGDTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif AGBBCWCCACWGTGGTGCMVHG AGTGCTCCACTGTGGTGTCACAGT AGTGCTCCACTGTGGTGYCACRGT Direction: Forward Position #: 1 Overlap #: 22 Alignment: AGBBCWCCACWGTGGTGCMVHG-- AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Original Motif ACKGTGMCACCACAGTGGAGCACT RAGKGMAGVRRGSRCASAGV RARBKVWGMMRVCACAGWGGAGCACT Direction: Forward Position #: 3 Overlap #: 18 Alignment: --ACKGTGMCACCACAGTGGAGCACT RAGKGMAGVRRGSRCASAGV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif RARBKVWGMMRVCACAGWGGAGCACT CHHCHBTCCTSCYTCTGC VHDBBBWSCHVCCHCWGHGGAGCACT Direction: Forward Position #: 1 Overlap #: 18 Alignment: RARBKVWGMMRVCACAGWGGAGCACT CHHCHBTCCTSCYTCTGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif VHDBBBWSCHVCCHCWGHGGAGCACT VDBHMAGGTCACCCTGACCY VDVBHVKGHCACCHYDVCSBAGCACT Direction: Forward Position #: 1 Overlap #: 20 Alignment: VHDBBBWSCHVCCHCWGHGGAGCACT VDBHMAGGTCACCCTGACCY------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Reverse Complement Original Motif AGTGCTVSGBHMDGGTGHCYBDBBDV VBBYCAAGGTCA DGBBCWAGGTCADGGTGHCYBDBBDV Direction: Forward Position #: 1 Overlap #: 12 Alignment: AGTGCTVSGBHMDGGTGHCYBDBBDV VBBYCAAGGTCA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement VDVBHVKGHCACCHTGACCTWGBVCD CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVTGTCACMVTGMYCYAGBVCD Direction: Forward Position #: 4 Overlap #: 21 Alignment: ---VDVBHVKGHCACCHTGACCTWGBVCD CCACTGTGVTGTCACAGTGCTCCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCCCCGCSssk Reverse Complement Reverse Complement DGBBCTKGMRCAVYGTGACAVCACAGTGG BBSGGCGGGGBS BVSBGCKGGVVCAVYGTGACAVCACAGTGG Direction: Forward Position #: 2 Overlap #: 11 Alignment: -DGBBCTKGMRCAVYGTGACAVCACAGTGG BBSGGCGGGGBS------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Reverse Complement BVSBGCKGGVVCAVYGTGACAVCACAGTGG GAKAGKTGGCTCWG BVGVKMGGKGGCWCWGTGACAVCACAGTGG Direction: Forward Position #: 3 Overlap #: 14 Alignment: BVSBGCKGGVVCAVYGTGACAVCACAGTGG --GAKAGKTGGCTCWG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 2 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Motif 5 Original Motif Reverse Complement GCARRGGSAGS GCAGAGGSAKG GCAGAGGSAGS Direction: Backward Position #: 1 Overlap #: 11 Alignment: GCARRGGSAGS GCAGAGGSAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Reverse Complement GCAGAGGSAGS GCAGAKGSAGGABDGHDG GCAGAGGSAGGABDGHDG Direction: Forward Position #: 1 Overlap #: 11 Alignment: GCAGAGGSAGS------- GCAGAKGSAGGABDGHDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Reverse Complement Reverse Complement CHHCHBTCCTSCCTCTGC BMSMGCCYMCTKSTGGMHM BHVMSCCYCCTGCYKSHBM Direction: Forward Position #: 2 Overlap #: 18 Alignment: -CHHCHBTCCTSCCTCTGC BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement BHVMSCCYCCTGCYKSHBM HVCDBBDBCAGCAG BHVCVBCHVCWGCWGSHBM Direction: Forward Position #: 2 Overlap #: 14 Alignment: BHVMSCCYCCTGCYKSHBM -HVCDBBDBCAGCAG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement BHVCVBCHVCWGCWGSHBM VCTSTGKSCMKBCTRCYCTK BHVVCHSTSCHSCDBSTVCYCTK Direction: Forward Position #: 4 Overlap #: 16 Alignment: BHVCVBCHVCWGCWGSHBM---- ---VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Reverse Complement Reverse Complement RAGKGVASBDGSHGSASHGVVDV CKGGDTBDMMCTGG CWGGDBHBHHSBDGSASHGVVDV Direction: Forward Position #: 1 Overlap #: 14 Alignment: RAGKGVASBDGSHGSASHGVVDV CKGGDTBDMMCTGG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Reverse Complement CWGGDBHBHHSBDGSASHGVVDV GGYGCTGTCCATGGTGCTGAA CDGBGCTGTCCHDGGTGCKGVDV Direction: Forward Position #: 2 Overlap #: 21 Alignment: CWGGDBHBHHSBDGSASHGVVDV -GGYGCTGTCCATGGTGCTGAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Original Motif CDGBGCTGTCCHDGGTGCKGVDV VDBHMAGGTCACCCTGACCY VDVVVDGSTSWCCVTGVYSYKGVDV Direction: Forward Position #: 3 Overlap #: 18 Alignment: --CDGBGCTGTCCHDGGTGCKGVDV VDBHMAGGTCACCCTGACCY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif VDVVVDGSTSWCCVTGVYSYKGVDV HCAGRRVACASAG VDVHVAGGDVACMSWGVYSYKGVDV Direction: Forward Position #: 4 Overlap #: 13 Alignment: VDVVVDGSTSWCCVTGVYSYKGVDV ---HCAGRRVACASAG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement VDVHVAGGDVACMSWGVYSYKGVDV BAGGYCABHBTGACCKHV VVGDHMRBHVWSACHGDBSYKGVDV Direction: Forward Position #: 1 Overlap #: 18 Alignment: VDVHVAGGDVACMSWGVYSYKGVDV BAGGYCABHBTGACCKHV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 3 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 TFM13 Reverse Complement Original Motif ATTTTTTTTTTTTT TTTTTTTKTTKTTTAATTHW WTTTTTTTTTTTTTAATTHW Direction: Forward Position #: 1 Overlap #: 14 Alignment: ATTTTTTTTTTTTT------ TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif WTTTTTTTTTTTTTAATTHW KTTTTTTKTTTTTTDAAB WTTTTTTTTTTTTTWWTTDAAB Direction: Forward Position #: 5 Overlap #: 16 Alignment: WTTTTTTTTTTTTTAATTHW-- ----KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Reverse Complement WTTTTTTTTTTTTTWWTTDAAB TTTRKTTTHTTTTH WTTTKTTTTTTTTTWWTTDAAB Direction: Forward Position #: 2 Overlap #: 14 Alignment: WTTTTTTTTTTTTTWWTTDAAB -TTTRKTTTHTTTTH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Original Motif WTTTKTTTTTTTTTWWTTDAAB ATGTWTTCATTMAT ATKTWTTYWTTHWTWWTTDAAB Direction: Forward Position #: 1 Overlap #: 14 Alignment: WTTTKTTTTTTTTTWWTTDAAB ATGTWTTCATTMAT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 37 Original Motif Original Motif ATKTWTTYWTTHWTWWTTDAAB TTTAATGTYTTTWA TWTDWTKTYTTTWATWWTTDAAB Direction: Forward Position #: 2 Overlap #: 13 Alignment: -ATKTWTTYWTTHWTWWTTDAAB TTTAATGTYTTTWA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Original Motif Reverse Complement TWTDWTKTYTTTWATWWTTDAAB TAGTTTYAKCTTT TWTAGTTTYWTYTWTWWTTDAAB Direction: Forward Position #: 3 Overlap #: 13 Alignment: TWTDWTKTYTTTWATWWTTDAAB --TAGTTTYAKCTTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Reverse Complement Reverse Complement BTTDAAWWAWAKAWKAAACTAWA TTAAAAWAGASTTA BTTAAAAWARASWTRAAACTAWA Direction: Forward Position #: 2 Overlap #: 14 Alignment: BTTDAAWWAWAKAWKAAACTAWA -TTAAAAWAGASTTA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Original Motif Reverse Complement BTTAAAAWARASWTRAAACTAWA TTYAAACATYTT BTTHAAACATHTTTRAAACTAWA Direction: Forward Position #: 2 Overlap #: 12 Alignment: BTTAAAAWARASWTRAAACTAWA -TTYAAACATYTT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 13 Reverse Complement Original Motif TWTAGTTTKAAAHATGTTTHAAB AACATATTTTCA AAYATATTTTCAAAHATGTTTHAAB Direction: Forward Position #: 3 Overlap #: 10 Alignment: --TWTAGTTTKAAAHATGTTTHAAB AACATATTTTCA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 35 Original Motif Original Motif AAYATATTTTCAAAHATGTTTHAAB TTGTTGATTTT TWRTWKATTTTCAAAHATGTTTHAAB Direction: Forward Position #: 2 Overlap #: 10 Alignment: -AAYATATTTTCAAAHATGTTTHAAB TTGTTGATTTT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 4 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Motif 45 Original Motif Original Motif GGAAM TGGAGGAAA TGGAGGAAA Direction: Forward Position #: 5 Overlap #: 5 Alignment: ----GGAAM TGGAGGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 25 Combined Motif Original Motif Reverse Complement TGGAGGAAA TTYGGAAAGCAG TKKHGGAAAGCAG Direction: Forward Position #: 2 Overlap #: 8 Alignment: TGGAGGAAA---- -TTYGGAAAGCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 47 Reverse Complement Reverse Complement CTGCTTTCCHYYA TGCCTTTCYTT YKSCTTTCCTTYA Direction: Forward Position #: 1 Overlap #: 11 Alignment: CTGCTTTCCHYYA TGCCTTTCYTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 48 Combined Motif Original Motif Reverse Complement YKSCTTTCCTTYA TTCTTYCATT YTBCTTTCMTTYA Direction: Forward Position #: 2 Overlap #: 10 Alignment: YKSCTTTCCTTYA -TTCTTYCATT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Combined Motif Reverse Complement Reverse Complement TKAAYGAAAGVAK TGAAAATATGTT TKAATGAAARDATGTT Direction: Forward Position #: 5 Overlap #: 9 Alignment: TKAAYGAAAGVAK--- ----TGAAAATATGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Combined Motif Original Motif Original Motif TKAATGAAARDATGTT AGAGAAAG TKARWGAAAGDATGTT Direction: Forward Position #: 3 Overlap #: 8 Alignment: TKAATGAAARDATGTT --AGAGAAAG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 Combined Motif Reverse Complement Reverse Complement AACATDCTTTCWMTYA AAGSATTTTCA AAMRBAYTTTCAMTYA Direction: Forward Position #: 2 Overlap #: 11 Alignment: AACATDCTTTCWMTYA -AAGSATTTTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 32 Reverse Complement Reverse Complement TKARTGAAAMTVMYTT TTTACTAAAT TTWAYKAAATTVMYTT Direction: Forward Position #: 1 Overlap #: 10 Alignment: TKARTGAAAMTVMYTT TTTACTAAAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement TTWAYKAAATTVMYTT GGYGCTGTCCATGGTGCTGAA GGYGCTGTCCATGGTGCTKAAYKAAATTVMYTT Direction: Forward Position #: 18 Overlap #: 4 Alignment: -----------------TTWAYKAAATTVMYTT GGYGCTGTCCATGGTGCTGAA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Original Motif Original Motif GGYGCTGTCCATGGTGCTKAAYKAAATTVMYTT ATGTWTTCATTMAT GGYGCTGTCCATGGTGCTKAAYKAAAATGYHTTCATTMAT Direction: Forward Position #: 27 Overlap #: 7 Alignment: GGYGCTGTCCATGGTGCTKAAYKAAATTVMYTT------- --------------------------ATGTWTTCATTMAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 5 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 TFM2 Original Motif Original Motif CYTSCCTCTGC CHHCHBTCCTSCYTCTGC CCTSCCTCTGCCHHCHBT Direction: Backward Position #: 1 Overlap #: 11 Alignment: -------CYTSCCTCTGC CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 2 Original Motif Reverse Complement CCTSCCTCTGCCHHCHBT SCTSCCKMTGC SCTSCCTCTGCCHHCHBT Direction: Forward Position #: 1 Overlap #: 11 Alignment: CCTSCCTCTGCCHHCHBT SCTSCCKMTGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement ABDGHDGGCAGAGGSAGS HVCDBBDBCAGCAG ABDVHBDGCAVCRGCAGS Direction: Forward Position #: 4 Overlap #: 14 Alignment: ABDGHDGGCAGAGGSAGS ---HVCDBBDBCAGCAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Original Motif ABDVHBDGCAVCRGCAGS RAGKGMAGVRRGSRCASAGV RADDVVHGVVRGVRSVVRGV Direction: Forward Position #: 2 Overlap #: 18 Alignment: -ABDVHBDGCAVCRGCAGS- RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Reverse Complement Reverse Complement VCKBVSKVCKVVCHVVHHTK BMSMGCCYMCTKSTGGMHM BVSHGVCBMCTDSYGGHHHTK Direction: Forward Position #: 2 Overlap #: 18 Alignment: -VCKBVSKVCKVVCHVVHHTK BMSMGCCYMCTKSTGGMHM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement RADDDCCMSHAGRVGVCDSBV GGYGCTGTCCATGGTGCTGAA GGYGCTGTCCVWGGTSCTGHAGRVGVCDSBV Direction: Forward Position #: 11 Overlap #: 11 Alignment: ----------RADDDCCMSHAGRVGVCDSBV GGYGCTGTCCATGGTGCTGAA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement GGYGCTGTCCVWGGTSCTGHAGRVGVCDSBV MGGTCAGGGTGACCTRDBHV MGGTSRBGCTGWCCDDGGBVCTGHAGRVGVCDSBV Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----GGYGCTGTCCVWGGTSCTGHAGRVGVCDSBV MGGTCAGGGTGACCTRDBHV--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Reverse Complement BVSHGVCBMCTHCAGVVCCDDGGWCAGCBKSACCY TGRCCTKTGHCCKAB BVSHGHSDCCTTYVBCMBHBDGGWCAGCBKSACCY Direction: Forward Position #: 6 Overlap #: 15 Alignment: BVSHGVCBMCTHCAGVVCCDDGGWCAGCBKSACCY -----TGRCCTKTGHCCKAB--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Original Motif BVSHGHSDCCTTYVBCMBHBDGGWCAGCBKSACCY CCAGYYHVADCCRG BVSHGHSCCMKYYVVVVCCDGGGWCAGCBKSACCY Direction: Forward Position #: 8 Overlap #: 14 Alignment: BVSHGHSDCCTTYVBCMBHBDGGWCAGCBKSACCY -------CCAGYYHVADCCRG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 Combined Motif Original Motif Original Motif BVSHGHSCCMKYYVVVVCCDGGGWCAGCBKSACCY YGCCACCTDSTGGY BVSHGYGCCMBCTDSHGSYDGGGWCAGCBKSACCY Direction: Forward Position #: 6 Overlap #: 14 Alignment: BVSHGHSCCMKYYVVVVCCDGGGWCAGCBKSACCY -----YGCCACCTDSTGGY---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 6 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 TFM1 Reverse Complement Reverse Complement GTGTGTGTGTGTGT TGTGTGWGTGTGTGTGTG GTGGTGTGTGTGTGTGTT Direction: Backward Position #: 4 Overlap #: 14 Alignment: -GTGTGTGTGTGTGT--- TGTGTGWGTGTGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement GTGGTGTGTGTGTGTGTT TGTGTGDKTGTGTGTGTRTG GTKGTGTGTKTGTGTGTKTRTG Direction: Forward Position #: 3 Overlap #: 16 Alignment: GTGGTGTGTGTGTGTGTT---- --TGTGTGDKTGTGTGTGTRTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif CAMARACACACAYACACACRAC CACTGTGRTRTCACAGTGSWSCACT CACTGTGRTRTCACAGWSMHVCACWCACACRAC Direction: Forward Position #: 12 Overlap #: 14 Alignment: -----------CAMARACACACAYACACACRAC CACTGTGRTRTCACAGTGSWSCACT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Original Motif GTKGTGTGWGTGBDYSWCTGTGAMAMCACAGTG KTTTTTTKTTTTTTDAAB KTTKTKTGTKTKTKBMABTGTGAMAMCACAGTG Direction: Forward Position #: 1 Overlap #: 18 Alignment: GTKGTGTGWGTGBDYSWCTGTGAMAMCACAGTG KTTTTTTKTTTTTTDAAB--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Original Motif Reverse Complement KTTKTKTGTKTKTKBMABTGTGAMAMCACAGTG TGTGTSWGTBTSTG TKTGTBTGTKTGTKBMABTGTGAMAMCACAGTG Direction: Forward Position #: 1 Overlap #: 14 Alignment: KTTKTKTGTKTKTKBMABTGTGAMAMCACAGTG TGTGTSWGTBTSTG------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif TKTGTBTGTKTGTKBMABTGTGAMAMCACAGTG TTTTTTTKTTKTTTAATTHW TKTKTKTKTKTTTTTWAHTKTKAMAMCACAGTG Direction: Forward Position #: 3 Overlap #: 20 Alignment: TKTGTBTGTKTGTKBMABTGTGAMAMCACAGTG --TTTTTTTKTTKTTTAATTHW----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Reverse Complement TKTKTKTKTKTTTTTWAHTKTKAMAMCACAGTG TTTRKTTTHTTTTH TKTKTKTTTGTTTTHTWDTDTKAMAMCACAGTG Direction: Forward Position #: 7 Overlap #: 14 Alignment: TKTKTKTKTKTTTTTWAHTKTKAMAMCACAGTG ------TTTRKTTTHTTTTH------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif TKTKTKTTTGTTTTHTWDTDTKAMAMCACAGTG CTGCTGBDBBDGBD TKTKTKTBTGYTKBDDHDKBDKAMAMCACAGTG Direction: Forward Position #: 8 Overlap #: 14 Alignment: TKTKTKTTTGTTTTHTWDTDTKAMAMCACAGTG -------CTGCTGBDBBDGBD------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Reverse Complement Original Motif CACTGTGRTRTYDVRDHDDVYAKCAVARARAYA AGGACAAAGAVV CACTGTGAKGHCAVAVHVVVYAKCAVARARAYA Direction: Forward Position #: 8 Overlap #: 12 Alignment: CACTGTGRTRTYDVRDHDDVYAKCAVARARAYA -------AGGACAAAGAVV-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif srACyCCGAyr Reverse Complement Reverse Complement TKTKTKTBTGYTKBBVHVTBTGHCYTCACAGTG KKTCGGKGTKS KKTCKGTGTGSTKBBVHVTBTGHCYTCACAGTG Direction: Forward Position #: 1 Overlap #: 11 Alignment: TKTKTKTBTGYTKBBVHVTBTGHCYTCACAGTG KKTCGGKGTKS---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 7 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 TFM12 Original Motif Original Motif HCAGRRVACASAG RAGKGMAGVRRGSRCASAGV RAGKGMWSARRRVRCASAGV Direction: Forward Position #: 7 Overlap #: 13 Alignment: ------HCAGRRVACASAG- RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement RAGKGMWSARRRVRCASAGV MGGTCAGGGTGACCTRDBHV RAGGBCASDRKGRMCWSDGHV Direction: Forward Position #: 2 Overlap #: 19 Alignment: RAGKGMWSARRRVRCASAGV- -MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement RAGGBCASDRKGRMCWSDGHV AGTGSWSCACTGTGAMAMCACAGTG AGTGVAGSACWGTGDVAMCACAGTG Direction: Forward Position #: 5 Overlap #: 21 Alignment: ----RAGGBCASDRKGRMCWSDGHV AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif CACTGTGRTVDCACWGTSCTVCACT CHHCHBTCCTSCYTCTGC CACTSHDVHBTCHYVSYBCTSCACT Direction: Forward Position #: 5 Overlap #: 18 Alignment: CACTGTGRTVDCACWGTSCTVCACT ----CHHCHBTCCTSCYTCTGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Reverse Complement Original Motif AGTGSAGVMSVMDGABHVHHSAGTG YDRCCASYAGRKGGCRSYV HGKSCASHAGVDGGMVVBVHSAGTG Direction: Forward Position #: 1 Overlap #: 19 Alignment: AGTGSAGVMSVMDGABHVHHSAGTG YDRCCASYAGRKGGCRSYV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Original Motif HGKSCASHAGVDGGMVVBVHSAGTG TGGAGCACTGTGACAVCACAGTGG HGTGSAGCASDGKGAVABCACAGTGG Direction: Forward Position #: 3 Overlap #: 23 Alignment: HGKSCASHAGVDGGMVVBVHSAGTG- --TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Reverse Complement CCACTGTGBTVTCRCDSTGCTSCACH TGRCCTKTGHCCKAB TSVMCTKTGBYCTMVCDSTGCTSCACH Direction: Forward Position #: 2 Overlap #: 14 Alignment: -CCACTGTGBTVTCRCDSTGCTSCACH TGRCCTKTGHCCKAB------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Reverse Complement TSVMCTKTGBYCTMVCDSTGCTSCACH CKGGDTBDMMCTGG TSVMCYKKGDYBBMVCDGKGCTSCACH Direction: Forward Position #: 6 Overlap #: 14 Alignment: TSVMCTKTGBYCTMVCDSTGCTSCACH -----CKGGDTBDMMCTGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Reverse Complement HGTGSAGCYCDGBYVBMDCRRKGRVSA WHAATTAAARAARAAAAAAA AAAAAHYVRKBWAAAAMRAAHGTGSAGCYCDG Direction: Backward Position #: 6 Overlap #: 15 Alignment: HGTGSAGCYCDGBYVBMDCRRKGRVSA----- ------------WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 8 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 TFM13 Original Motif Reverse Complement HAAAAHAAARMAAA WHAATTAAARAARAAAAAAA WHAATHAAAAAAAAAMAAAA Direction: Forward Position #: 6 Overlap #: 14 Alignment: -----HAAAAHAAARMAAA- WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif TTTTYTTTTTTTTTHATTDW KTTTTTTKTTTTTTDAAB TTTTTTTKTTTTTTDAWKDW Direction: Forward Position #: 1 Overlap #: 18 Alignment: TTTTYTTTTTTTTTHATTDW KTTTTTTKTTTTTTDAAB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Original Motif WHRWTDAAAAAARAAAAAAA AAAAAAAAAAAAAT WHRWWAAAAAAAAAAAAWAA Direction: Forward Position #: 5 Overlap #: 14 Alignment: WHRWTDAAAAAARAAAAAAA ----AAAAAAAAAAAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 37 Reverse Complement Original Motif TTWTTTTTTTTTTTTWWKDW TTTAATGTYTTTWA TTTWWTKTTTTTTWTWWKDW Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTWTTTTTTTTTTTTWWKDW TTTAATGTYTTTWA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Original Motif WHRWWAWAAAAAAYAWWAAA CAMACACACACAYDCACACA WHRYAMAMAMAMACAHWMAMACA Direction: Forward Position #: 4 Overlap #: 17 Alignment: WHRWWAWAAAAAAYAWWAAA--- ---CAMACACACACAYDCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Reverse Complement TGTYTRWHTGTRTYTYTYTMKDW TGTGTGWGTGTGTGTGTG TGTYTRTDTGTGTBTBTBTVTKW Direction: Forward Position #: 5 Overlap #: 18 Alignment: TGTYTRWHTGTRTYTYTYTMKDW ----TGTGTGWGTGTGTGTGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Original Motif Reverse Complement TGTYTRTDTGTGTBTBTBTVTKW TGTGTSWGTBTSTG TGTYTGTGTSWGTBTSTGTVTKW Direction: Forward Position #: 5 Overlap #: 14 Alignment: TGTYTRTDTGTGTBTBTBTVTKW ----TGTGTSWGTBTSTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement TGTYTGTGTSWGTBTSTGTVTKW VCTSTGKSCMKBCTRCYCTK TGTYTSTSTGDSHVTBYKDVYVTK Direction: Forward Position #: 5 Overlap #: 19 Alignment: TGTYTGTGTSWGTBTSTGTVTKW- ----VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 9 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 CTCF Reverse Complement Original Motif GAKAGKTGGCTCWG YDRCCASYAGRKGGCRSYV RVBAGGTGGCDCWGYDRCC Direction: Backward Position #: 1 Overlap #: 14 Alignment: -----GAKAGKTGGCTCWG YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif GGMHMCWGHGCCACCTVBK TGGAGCACTGTGACAVCACAGTGG TGGRVCACTGTGMCACCWCHGTGG Direction: Forward Position #: 3 Overlap #: 19 Alignment: --GGMHMCWGHGCCACCTVBK--- TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Original Motif CCACHGWGGTGYCACAGTGVKCCA RAGKGMAGVRRGSRCASAGV VMABDVWGDDGBCACAGWGVKCCA Direction: Forward Position #: 1 Overlap #: 20 Alignment: CCACHGWGGTGYCACAGTGVKCCA RAGKGMAGVRRGSRCASAGV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif TGGRVCWCTGTGBCDHCWVHVTRV AGTGCTCCACTGTGGTGTCACAGT AGTGSTCCACTGTGBYGTCACAVTRV Direction: Forward Position #: 3 Overlap #: 22 Alignment: --TGGRVCWCTGTGBCDHCWVHVTRV AGTGCTCCACTGTGGTGTCACAGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif AGTGSTCCACTGTGBYGTCACAVTRV AMTGTGACACCACAGT AVTGTKMCACYRYRGTGTCACAVTRV Direction: Forward Position #: 1 Overlap #: 16 Alignment: AGTGSTCCACTGTGBYGTCACAVTRV AMTGTGACACCACAGT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement AVTGTKMCACYRYRGTGTCACAVTRV AGTGSWSCACTGTGAMAMCACAGTG AGTGBDVCACTGTGVYRHCACAGTGV Direction: Forward Position #: 1 Overlap #: 25 Alignment: AVTGTKMCACYRYRGTGTCACAVTRV AGTGSWSCACTGTGAMAMCACAGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif AGTGBDVCACTGTGVYRHCACAGTGV VHRGGTCABDBTGMCCTB AVTGGGBCACBGTGVCMYCACAGTGV Direction: Forward Position #: 2 Overlap #: 18 Alignment: AGTGBDVCACTGTGVYRHCACAGTGV -VHRGGTCABDBTGMCCTB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif AVTGGGBCACBGTGVCMYCACAGTGV VDBHMAGGTCACCCTGACCY AVTGBDBCAVKGTSACCHYRMMSTGV Direction: Forward Position #: 5 Overlap #: 20 Alignment: AVTGGGBCACBGTGVCMYCACAGTGV ----VDBHMAGGTCACCCTGACCY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Original Motif AVTGBDBCAVKGTSACCHYRMMSTGV TGTGGTGTCACAGTGCTCC TRBKGTGTCACDGTGMYCCYRMMSTGV Direction: Forward Position #: 2 Overlap #: 18 Alignment: -AVTGBDBCAVKGTSACCHYRMMSTGV TGTGGTGTCACAGTGCTCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Original Motif Reverse Complement TRBKGTGTCACDGTGMYCCYRMMSTGV CKGGDTBDMMCTGG CTGGKKBGHCMBRGTGMYCCYRMMSTGV Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TRBKGTGTCACDGTGMYCCYRMMSTGV CKGGDTBDMMCTGG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 10 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 TFM11 Reverse Complement Reverse Complement TGTGTSWGTBTSTG TGTGTGDKTGTGTGTGTRTG TGTGTSWGTGTGTGTGTRTG Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGTGTSWGTBTSTG------ TGTGTGDKTGTGTGTGTRTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement TGTGTSWGTGTGTGTGTRTG TGTGTGWGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTG Direction: Forward Position #: 5 Overlap #: 16 Alignment: TGTGTSWGTGTGTGTGTRTG-- ----TGTGTGWGTGTGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Original Motif CACACACACACACACACACACA TTCAGCACCATGGACAGCKCC CACACABWCASVMMCABRSACAGCKCC Direction: Forward Position #: 7 Overlap #: 16 Alignment: CACACACACACACACACACACA----- ------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement GGYGCTGTSMBTGRYBSTGWBTGTGTG BAGGYCABHBTGACCKHV GGYBMKGTCABHGKGHCYGWDTGTGTG Direction: Forward Position #: 4 Overlap #: 18 Alignment: GGYGCTGTSMBTGRYBSTGWBTGTGTG ---BAGGYCABHBTGACCKHV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Original Motif GGYBMKGTCABHGKGHCYGWDTGTGTG TGTGGTGTCACAGTGCTCC KGTGVTGTCACWGTGMYYSWDTGTGTG Direction: Forward Position #: 1 Overlap #: 19 Alignment: GGYBMKGTCABHGKGHCYGWDTGTGTG TGTGGTGTCACAGTGCTCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Original Motif KGTGVTGTCACWGTGMYYSWDTGTGTG TTTTTTTKTTKTTTAATTHW ATTHWTYWBTKTKTTYTTTWKGTGVTGTCACW Direction: Backward Position #: 6 Overlap #: 15 Alignment: KGTGVTGTCACWGTGMYYSWDTGTGTG----- ------------TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement ATTHWTYWBTKTKTTYTTTWKGTGVTGTCACW CCACTGTGVTGTCACAGTGCTCCA GTGCTCCACYWYTBTKBTKTBRYRATTHWTYWBTKTKTTY Direction: Backward Position #: 9 Overlap #: 16 Alignment: ATTHWTYWBTKTKTTYTTTWKGTGVTGTCACW-------- ----------------CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 11 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Motif 17 Original Motif Reverse Complement AAAATKCTATT AAATAKATWTT AAAWWKMTATT Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAATKCTATT AAATAKATWTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 29 Original Motif Reverse Complement AAAWWKMTATT AATCTGTTATT AAWHTGHTATT Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAWWKMTATT AATCTGTTATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Original Motif Original Motif AAWHTGHTATT TAASTCTWTTTTAA WAABTSTTWTTTAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAWHTGHTATT--- TAASTCTWTTTTAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 37 Original Motif Reverse Complement WAABTSTTWTTTAA TWAAAKACATTAAA TAAAWBWYATTWAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: WAABTSTTWTTTAA TWAAAKACATTAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 13 Reverse Complement Reverse Complement TTWAATKWBWTTTA TGAAAATATGTT TKAAAWTATKTTTA Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTWAATKWBWTTTA TGAAAATATGTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Reverse Complement TAAAYATAWTTTYA TAGTTTYAKCTTT KCTTTWARTWTHATAAAYA Direction: Backward Position #: 6 Overlap #: 8 Alignment: TAAAYATAWTTTYA----- ------TAGTTTYAKCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 12 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 Motif 13 Reverse Complement Original Motif AAGSATTTTCA AACATATTTTCA AAMRBATTTTCA Direction: Forward Position #: 2 Overlap #: 11 Alignment: -AAGSATTTTCA AACATATTTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 37 Reverse Complement Original Motif TGAAAATVKYTT TTTAATGTYTTTWA TKWAAWKDBTTTWA Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGAAAATVKYTT-- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Reverse Complement TKWAAWKDBTTTWA TTYAAACATYTT TTHAAABATYTTWA Direction: Forward Position #: 1 Overlap #: 12 Alignment: TKWAAWKDBTTTWA TTYAAACATYTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Reverse Complement Reverse Complement TWAAMATBTTTHAA AAACAATYTTT WAAMAATBTTTHAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TWAAMATBTTTHAA AAACAATYTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Reverse Complement WAAMAATBTTTHAA CCACTGTGVTGTCACAGTGCTCCA AHMACWRTGTTKTMCCACTGTGVTG Direction: Backward Position #: 2 Overlap #: 13 Alignment: -----------WAAMAATBTTTHAA -CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 13 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Motif 15 Original Motif Original Motif AACATATTTTCA AAMATGTTTMAA AACATRTTTHMA Direction: Forward Position #: 1 Overlap #: 12 Alignment: AACATATTTTCA AAMATGTTTMAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Reverse Complement Reverse Complement TYHAAAKATGTT TTAAAAWAGASTTA TTAAAADAKRBTTA Direction: Forward Position #: 1 Overlap #: 12 Alignment: TYHAAAKATGTT-- TTAAAAWAGASTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 37 Original Motif Original Motif TTAAAADAKRBTTA TTTAATGTYTTTWA TTWAAWGWBWTTTA Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTAAAADAKRBTTA TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif TTWAAWGWBWTTTA AGTGCTCCACTGTGGTGTCACAGT AGTGCTCCACTGTGGTKTYAMAGTBWTTTA Direction: Forward Position #: 17 Overlap #: 8 Alignment: ----------------TTWAAWGWBWTTTA AGTGCTCCACTGTGGTGTCACAGT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif TAAAWVACTYTKARACCACAGTGGAGCACT CACACACACACWCACACA TAAAWVACTYTKARACCACAGTGGMRCACWCACACWCACACA Direction: Forward Position #: 25 Overlap #: 6 Alignment: TAAAWVACTYTKARACCACAGTGGAGCACT------------ ------------------------CACACACACACWCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AmTGTGACACCACAGT Combined Motif Original Motif Original Motif TAAAWVACTYTKARACCACAGTGGMRCACWCACACWCACACA AMTGTGACACCACAGT TAAAWVACTBTGAVACCACAGTGGMRCACWCACACWCACACA Direction: Forward Position #: 7 Overlap #: 16 Alignment: TAAAWVACTYTKARACCACAGTGGMRCACWCACACWCACACA ------AMTGTGACACCACAGT-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif TAAAWVACTBTGAVACCACAGTGGMRCACWCACACWCACACA TGGAGCACTGTGACAVCACAGTGG TRRARMACTGTGACACCACAGTGGMRCACWCACACWCACACA Direction: Forward Position #: 1 Overlap #: 24 Alignment: TAAAWVACTBTGAVACCACAGTGGMRCACWCACACWCACACA TGGAGCACTGTGACAVCACAGTGG------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Reverse Complement TGTGTGWGTGTGWGTGMYCCACTGTGGTGTCACAGTRMTKMA TGTGTGDKTGTGTGTGTRTG TGTGTGDKTGTGTGTGYDYSACTGTGGTGTCACAGTRMTKMA Direction: Forward Position #: 1 Overlap #: 20 Alignment: TGTGTGWGTGTGWGTGMYCCACTGTGGTGTCACAGTRMTKMA TGTGTGDKTGTGTGTGTRTG---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement TRRARMACTGTGACACCACAGTSMDMCACACACAYDCACACA AGTGSWSCACTGTGAMAMCACAGTG AGTGVAGCACTGTGACAMCACAGTGMDMCACACACAYDCACACA Direction: Forward Position #: 3 Overlap #: 23 Alignment: --TRRARMACTGTGACACCACAGTSMDMCACACACAYDCACACA AGTGSWSCACTGTGAMAMCACAGTG------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif AGTGVAGCACTGTGACAMCACAGTGMDMCACACACAYDCACACA AAAAAAAAAAAAAT AGTGVAGCACTGTGACAMCACAGTGMDMCACACACAYDCAMAMAAAAAAAAAT Direction: Forward Position #: 40 Overlap #: 5 Alignment: AGTGVAGCACTGTGACAMCACAGTGMDMCACACACAYDCACACA--------- ---------------------------------------AAAAAAAAAAAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 14 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Motif 49 Original Motif Reverse Complement AAAMATTGTTT TTAAAAWAGASTTA AAAHAKWGTTWTTA Direction: Backward Position #: 1 Overlap #: 11 Alignment: ---AAAMATTGTTT TTAAAAWAGASTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 17 Original Motif Reverse Complement AAAHAKWGTTWTTA AAATAKATWTT AAATAKAKTTTTTA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAHAKWGTTWTTA AAATAKATWTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 13 Reverse Complement Reverse Complement TAAAAARTYTATTT TGAAAATATGTT TRAAAADWTKTTTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: TAAAAARTYTATTT TGAAAATATGTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 12 Original Motif Original Motif TRAAAADWTKTTTT TGAAAATSCTT TGAAAATVYTTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TRAAAADWTKTTTT TGAAAATSCTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 29 Reverse Complement Original Motif AAAAAKBATTTTCA AATAACAGATT AAWAASARWTTTCA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAAAKBATTTTCA AATAACAGATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Original Motif Original Motif AAWAASARWTTTCA AAAAAAAAAAAAAT AAAAAAAVAAAWWTCA Direction: Forward Position #: 3 Overlap #: 12 Alignment: --AAWAASARWTTTCA AAAAAAAAAAAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Reverse Complement Original Motif TGAWWTTTBTTTTTTT AAAATKCTATT WRAATTYTATTTTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TGAWWTTTBTTTTTTT AAAATKCTATT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Reverse Complement Reverse Complement AAAAAAATAKAATTKW TAGCAATAAAT TARMAAWAAATAATTKW Direction: Forward Position #: 2 Overlap #: 10 Alignment: -AAAAAAATAKAATTKW TAGCAATAAAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Original Motif WRAATTATTTWTTYKTA ACAACACATTT AHAAMWYATTTWTTYKTA Direction: Forward Position #: 2 Overlap #: 10 Alignment: -WRAATTATTTWTTYKTA ACAACACATTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 37 Original Motif Reverse Complement AHAAMWYATTTWTTYKTA TWAAAKACATTAAA TAAAABACATTWAWTYKTA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -AHAAMWYATTTWTTYKTA TWAAAKACATTAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 15 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Motif 13 Original Motif Original Motif AAMATGTTTMAA AACATATTTTCA AACATRTTTHMA Direction: Forward Position #: 1 Overlap #: 12 Alignment: AAMATGTTTMAA AACATATTTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 37 Reverse Complement Original Motif TYHAAAKATGTT TTTAATGTYTTTWA TTTAAWGWTKTTWA Direction: Forward Position #: 1 Overlap #: 12 Alignment: TYHAAAKATGTT-- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Reverse Complement Original Motif TWAARAWCWTTAAA TAASTCTWTTTTAA TAAVTMTHTTTTAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: TWAARAWCWTTAAA TAASTCTWTTTTAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Reverse Complement TTAAAADARABTTA BTTHAAAAAAYAAAAAAR TTTAAAAAAAYWWAAAAR Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTAAAADARABTTA---- BTTHAAAAAAYAAAAAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif KTTTTWWMTTTTTTTAAA TTTTTTTKTTKTTTAATTHW KTTTTTTHTTTTTTTWWAATTHW Direction: Forward Position #: 4 Overlap #: 15 Alignment: KTTTTWWMTTTTTTTAAA----- ---TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif WHAATTWWAAAAAAAHAAAAAAR AAAGGTCAAAGGTCAAC TCAACWAARRWMAAAGRWHAATTWWAAA Direction: Backward Position #: 6 Overlap #: 12 Alignment: WHAATTWWAAAAAAAHAAAAAAR----- -----------AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 16 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif AAATGTGTTGT AGTGCTCCACTGTGGTGTCACAGT AGTGCTCMAMTGTGKTGTCACAGT Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------AAATGTGTTGT------ AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement ACTGTGACARCACAYTYGAGCACT CCACTGTGVTGTCACAGTGCTCCA CCACTGTGAYRWCACABTBSWSCACT Direction: Forward Position #: 3 Overlap #: 22 Alignment: --ACTGTGACARCACAYTYGAGCACT CCACTGTGVTGTCACAGTGCTCCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 17 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Motif 13 Reverse Complement Reverse Complement AAATAKATWTT TGAAAATATGTT RAAWATATDTTT Direction: Backward Position #: 1 Overlap #: 11 Alignment: -AAATAKATWTT TGAAAATATGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Reverse Complement Original Motif AAAHATATWTTK AAAATKCTATT AAAAWTMTATTK Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAHATATWTTK AAAATKCTATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Reverse Complement Original Motif YAATARAWTTTT TAASTCTWTTTTAA TAABWCWWTTTTAA Direction: Forward Position #: 1 Overlap #: 12 Alignment: YAATARAWTTTT-- TAASTCTWTTTTAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 37 Original Motif Reverse Complement TAABWCWWTTTTAA TWAAAKACATTAAA TAAAABAHWTTWAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: TAABWCWWTTTTAA TWAAAKACATTAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 29 Original Motif Original Motif TAAAABAHWTTWAA AATAACAGATT WAWAACABATTWAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TAAAABAHWTTWAA AATAACAGATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 28 Reverse Complement Reverse Complement TTWAATBTGTTWTW TTWATGWCTTT TTWAWKHYKTTWTW Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTWAATBTGTTWTW TTWATGWCTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Reverse Complement Reverse Complement WAWAARKHYWTWAA AAACAATYTTT AAAMAATYTTTWAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: WAWAARKHYWTWAA AAACAATYTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Reverse Complement TTWAAAMATTRTTT TTYAAACATYTT TTHAAACATTKTTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTWAAAMATTRTTT TTYAAACATYTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Original Motif AAARAATGTTTHAA ACAACACATTT AMAAMAYRTTTHAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAARAATGTTTHAA ACAACACATTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif AMAAMAYRTTTHAA AAAAAAAAAAAAAT AMAAAAAAWWWAAAAT Direction: Forward Position #: 3 Overlap #: 12 Alignment: AMAAMAYRTTTHAA-- --AAAAAAAAAAAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 18 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Motif 37 Reverse Complement Original Motif TTATATYATTA TTTAATGTYTTTWA TTTWATRTYWTTAA Direction: Forward Position #: 3 Overlap #: 11 Alignment: --TTATATYATTA- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Reverse Complement TTAAWKAKATWAAA WHAATTAAARAARAAAAAAA TTAAADWKAWAAAARAAAAAAA Direction: Forward Position #: 3 Overlap #: 12 Alignment: TTAAWKAKATWAAA-------- --WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Reverse Complement Original Motif TTTTTTTKTTTTWTRWHTTTAA ATTTATTGCTA WTTTWTTGYTWTWTRWHTTTAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTTTTTTKTTTTWTRWHTTTAA ATTTATTGCTA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Reverse Complement WTTTWTTGYTWTWTRWHTTTAA ATTTTTTTTTTTTT WTTTATTKTTTTTTTTTTTTAA Direction: Forward Position #: 5 Overlap #: 14 Alignment: WTTTWTTGYTWTWTRWHTTTAA ----ATTTTTTTTTTTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 13 Original Motif Original Motif WTTTATTKTTTTTTTTTTTTAA AACATATTTTCA AAYWTATTTTYWTTTTTTTTTAA Direction: Forward Position #: 2 Overlap #: 11 Alignment: -WTTTATTKTTTTTTTTTTTTAA AACATATTTTCA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 20 Original Motif Original Motif AAYWTATTTTYWTTTTTTTTTAA TCTKTGTCAAWA ATYTTTKTYWWWAAYWTATTTTYW Direction: Backward Position #: 2 Overlap #: 11 Alignment: AAYWTATTTTYWTTTTTTTTTAA- ------------TCTKTGTCAAWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Reverse Complement Original Motif WKAAAATAWKTTWWWKAYAAAKAT ATGTWTTCATTMAT ATATKTWTTCATWAATWKAAAATA Direction: Backward Position #: 3 Overlap #: 14 Alignment: WKAAAATAWKTTWWWKAYAAAKAT --------ATGTWTTCATTMAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 19 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Motif 50 Reverse Complement Original Motif TAGTTTYAKCTTT ATAGGTTTAGYATA ATAGKTTTAGCWTW Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TAGTTTYAKCTTT ATAGGTTTAGYATA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif WAWGCTAAAYCTAT AAAGGTCAAAGGTCAAC AAAGGTCAAAGSTMAAYCTAT Direction: Forward Position #: 8 Overlap #: 10 Alignment: -------WAWGCTAAAYCTAT AAAGGTCAAAGGTCAAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Reverse Complement AAAGGTCAAAGSTMAAYCTAT ATTTTTTTTTTTTT AAAGGTCAAAGSTMAATYTWTTTTTTTTT Direction: Forward Position #: 16 Overlap #: 6 Alignment: AAAGGTCAAAGSTMAAYCTAT-------- ---------------ATTTTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Original Motif AAAAAAAAAWAKATTRASCTTTGACCTTT HAAAAHAAARMAAA AAAAAAAAAWADADYRAVCTTTGACCTTT Direction: Forward Position #: 5 Overlap #: 14 Alignment: AAAAAAAAAWAKATTRASCTTTGACCTTT ----HAAAAHAAARMAAA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Reverse Complement AAAAAAAAAWADADYRAVCTTTGACCTTT WHAATTAAARAARAAAAAAA AAAAAWWAAAAAADWAAAMWWTGACCTTT Direction: Forward Position #: 2 Overlap #: 20 Alignment: AAAAAAAAAWADADYRAVCTTTGACCTTT -WHAATTAAARAARAAAAAAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif AAAGGTCAWWYTTTWDTTTTTTWWTTTTT KTTTTTTKTTTTTTDAAB AAAGGTYWTTTTTKTTTTTTTWADTTTTT Direction: Forward Position #: 7 Overlap #: 18 Alignment: AAAGGTCAWWYTTTWDTTTTTTWWTTTTT ------KTTTTTTKTTTTTTDAAB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif AAAAADTWAAAAAAARAAAAAWKACCTTT CWGAGCCAYCTYTC AAAAADTWAAAAAAARAAAAAWKACCTKHGCCAYCTYTC Direction: Forward Position #: 26 Overlap #: 4 Alignment: AAAAADTWAAAAAAARAAAAAWKACCTTT---------- -------------------------CWGAGCCAYCTYTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Original Motif Reverse Complement AAAAADTWAAAAAAARAAAAAWKACCTKHGCCAYCTYTC TTAAAAWAGASTTA AAAAADTTWAAAAWAGAVWWAWKACCTKHGCCAYCTYTC Direction: Forward Position #: 8 Overlap #: 14 Alignment: AAAAADTWAAAAAAARAAAAAWKACCTKHGCCAYCTYTC -------TTAAAAWAGASTTA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Original Motif Reverse Complement AAAAADTTWAAAAWAGAVWWAWKACCTKHGCCAYCTYTC ATYAATGAAWACAT AAAAADATTAAWRAADACATAWKACCTKHGCCAYCTYTC Direction: Forward Position #: 7 Overlap #: 14 Alignment: AAAAADTTWAAAAWAGAVWWAWKACCTKHGCCAYCTYTC ------ATYAATGAAWACAT------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Reverse Complement Original Motif GAKAGKTGGCHYAGGTYWTATGTDTTMWTTAATDTTTTT TTTATGGTGAGCAT GAKAGKTGGCHYAGGTYWTATGTDTTMWTTAATDTTTWTGGTGAGCAT Direction: Forward Position #: 35 Overlap #: 5 Alignment: GAKAGKTGGCHYAGGTYWTATGTDTTMWTTAATDTTTTT--------- ----------------------------------TTTATGGTGAGCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 20 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 20 TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif TCTKTGTCAAWA TGGAGCACTGTGACAVCACAGTGG CAGTGGWCTGTGWCAAHATGGAGC Direction: Backward Position #: 7 Overlap #: 12 Alignment: ------TCTKTGTCAAWA------ TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement CAGTGGWCTGTGWCAAHATGGAGC AGTGSWSCACTGTGAMAMCACAGTG AGYRGTGSACTGTGWCAMCAYRGWGC Direction: Forward Position #: 3 Overlap #: 23 Alignment: --CAGTGGWCTGTGWCAAHATGGAGC AGTGSWSCACTGTGAMAMCACAGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Reverse Complement GCWCKKTGYTGWCACAGTSCACKMCT GGAGCACTGTGACACCACA GGAGCACTGTGWYRHCACAGTSCACKMCT Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---GCWCKKTGYTGWCACAGTSCACKMCT GGAGCACTGTGACACCACA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif AGYRGTGSACTGTGDKKWCACAGTGCTCC AGTGCTCCACTGTGGTGTCACAGT AGTGSTSCACTGTGKTGTCACAGTGCTCC Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGYRGTGSACTGTGDKKWCACAGTGCTCC AGTGCTCCACTGTGGTGTCACAGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Reverse Complement Reverse Complement GGAGCACTGTGACAYCACAGTGSASCACT ACTGTGGTGTCACART RSWGYRSTGTSACAVYACAGTGSASCACT Direction: Forward Position #: 1 Overlap #: 16 Alignment: GGAGCACTGTGACAYCACAGTGSASCACT ACTGTGGTGTCACART------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 21 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 NR1H2RXRA Reverse Complement Original Motif GAGGTCAGAAG AAAGGTCAAAGGTCAAC ARAGGTCARARGTCAAC Direction: Forward Position #: 2 Overlap #: 11 Alignment: -GAGGTCAGAAG----- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Original Motif ARAGGTCARARGTCAAC BTRGGDCARAGGKCA VDAGGTCARAGGTCAAC Direction: Forward Position #: 1 Overlap #: 15 Alignment: ARAGGTCARARGTCAAC BTRGGDCARAGGKCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 22 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 22 NR1H2RXRA Original Motif Original Motif CAAAGTCCAGC AAAGGTCAAAGGTCAAC AAAGGTCAAAGKYCARC Direction: Forward Position #: 7 Overlap #: 11 Alignment: ------CAAAGTCCAGC AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Original Motif Reverse Complement AAAGGTCAAAGKYCARC ABCACAGTGGAGCACTG AAAGRTCAMAGTBSAGCACTG Direction: Forward Position #: 5 Overlap #: 13 Alignment: AAAGGTCAAAGKYCARC---- ----ABCACAGTGGAGCACTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Reverse Complement Reverse Complement CAGTGCTSBACTYTGAMCTTT AGTGCTCCACTGTGDTG CAGTGCTCCACTKTGVHSTTT Direction: Forward Position #: 2 Overlap #: 17 Alignment: CAGTGCTSBACTYTGAMCTTT -AGTGCTCCACTGTGDTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Reverse Complement AAASHBCAYAGTGGAGCACTG ACTGTGACACCACAGTGGAGCACT ACTGWRACABCACAGTGGAGCACTG Direction: Forward Position #: 5 Overlap #: 20 Alignment: ----AAASHBCAYAGTGGAGCACTG ACTGTGACACCACAGTGGAGCACT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif ACTGWRACABCACAGTGGAGCACTG CACTGTGRTRTCACAGTGSWSCACT CACTGTGAYRYCACAGTGSAGCACTG Direction: Forward Position #: 2 Overlap #: 24 Alignment: -ACTGWRACABCACAGTGGAGCACTG CACTGTGRTRTCACAGTGSWSCACT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement CACTGTGAYRYCACAGTGSAGCACTG CCACTGTGVTGTCACAGTGCTCCA CCACTGTGRTRTCACAGTGSWSCACTG Direction: Forward Position #: 2 Overlap #: 23 Alignment: -CACTGTGAYRYCACAGTGSAGCACTG CCACTGTGVTGTCACAGTGCTCCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Original Motif CCACTGTGRTRTCACAGTGSWSCACTG TGTGGTGTCACAGTGCTCC CCACTGTGGTGTCACAGTGCTCCACTG Direction: Forward Position #: 5 Overlap #: 19 Alignment: CCACTGTGRTRTCACAGTGSWSCACTG ----TGTGGTGTCACAGTGCTCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif CAGTGGAGCACTGTGACACCACAGTGG TTCAGCACCATGGACAGCKCC ACAGCKCCWKCASYRYSAYRGCAGTGGAGCACTGT Direction: Backward Position #: 9 Overlap #: 13 Alignment: CAGTGGAGCACTGTGACACCACAGTGG-------- --------------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 23 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Motif 47 Reverse Complement Reverse Complement CTTTCTCT TGCCTTTCYTT TGCCTTTCTYT Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---CTTTCTCT TGCCTTTCYTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 48 Reverse Complement Original Motif AKAGAAAGGCA AATGKAAGAA ADWGDAAGRMA Direction: Forward Position #: 1 Overlap #: 10 Alignment: AKAGAAAGGCA AATGKAAGAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 20 Reverse Complement Original Motif TYKCTTDCWDT TCTKTGTCAAWA TCTBTKTCAATA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TYKCTTDCWDT- TCTKTGTCAAWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Original Motif Original Motif TCTBTKTCAATA CTGCTTTCCMAA YYKCTTTCMAWA Direction: Forward Position #: 1 Overlap #: 12 Alignment: TCTBTKTCAATA CTGCTTTCCMAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Original Motif Reverse Complement YYKCTTTCMAWA TAGTTTYAKCTTT TAGTTTYWKCTTTCMAWA Direction: Forward Position #: 7 Overlap #: 7 Alignment: ------YYKCTTTCMAWA TAGTTTYAKCTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 45 Reverse Complement Original Motif TWTRGAAAGYWKAAACTA TGGAGGAAA TKKAGGAAAGYWKAAACTA Direction: Forward Position #: 2 Overlap #: 8 Alignment: -TWTRGAAAGYWKAAACTA TGGAGGAAA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Reverse Complement Reverse Complement TAGTTTYWKCTTTCCTYYA ATTTTTTTTTTTTT WWKTTTTTTYTTTYCTYYA Direction: Forward Position #: 1 Overlap #: 14 Alignment: TAGTTTYWKCTTTCCTYYA ATTTTTTTTTTTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif WWKTTTTTTYTTTYCTYYA TTTTTTTKTTKTTTAATTHW WWKTTTTTTTTTTTYTTHATTHW Direction: Forward Position #: 4 Overlap #: 16 Alignment: WWKTTTTTTYTTTYCTYYA---- ---TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 24 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 24 CTCF Original Motif Reverse Complement TCCTCCTGGAA BMSMGCCYMCTKSTGGMHM BMSMGCCTCCTCCTGGAAM Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------TCCTCCTGGAA- BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Reverse Complement Original Motif YTTCCAGGAGGAGGCRSYV YGCCACCTDSTGGY YGCCHCCWGSWGGMGGCRSYV Direction: Forward Position #: 3 Overlap #: 12 Alignment: --YTTCCAGGAGGAGGCRSYV YGCCACCTDSTGGY------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 25 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 25 Motif 26 Reverse Complement Original Motif TTYGGAAAGCAG TTTATGGTGAGCAT TTTWTGGWRAGCAK Direction: Forward Position #: 3 Overlap #: 12 Alignment: --TTYGGAAAGCAG TTTATGGTGAGCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Original Motif Original Motif TTTWTGGWRAGCAK KTTTTTTKTTTTTTDAAB KTTTTTTTTTTTKKWAAGCAK Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------TTTWTGGWRAGCAK KTTTTTTKTTTTTTDAAB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement YTGCTTWYYAAAAAAAAAAAR GGYGCTGTCCATGGTGCTGAA GGYGCTGTCCHTGSTKHYBAAAAAAAAAAAR Direction: Forward Position #: 11 Overlap #: 11 Alignment: ----------YTGCTTWYYAAAAAAAAAAAR GGYGCTGTCCATGGTGCTGAA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Reverse Complement GGYGCTGTCCHTGSTKHYBAAAAAAAAAAAR ACTGTGGTGTCACART ACKGTGSTGTCMCWGBTKHYBAAAAAAAAAAAR Direction: Forward Position #: 3 Overlap #: 14 Alignment: --GGYGCTGTCCHTGSTKHYBAAAAAAAAAAAR ACTGTGGTGTCACART----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement ACKGTGSTGTCMCWGBTKHYBAAAAAAAAAAAR ACTGTGACACCACAGTGGAGCACT ACTGTGAYRYCACAGTKGAKCAMWAAAAAAAAR Direction: Forward Position #: 1 Overlap #: 24 Alignment: ACKGTGSTGTCMCWGBTKHYBAAAAAAAAAAAR ACTGTGACACCACAGTGGAGCACT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement ACTGTGAYRYCACAGTKGAKCAMWAAAAAAAAR CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVTGTCACAGTGSWSCAMWAAAAAAAAR Direction: Forward Position #: 3 Overlap #: 22 Alignment: --ACTGTGAYRYCACAGTKGAKCAMWAAAAAAAAR CCACTGTGVTGTCACAGTGCTCCA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement CCACTGTGVTGTCACAGTGSWSCAMWAAAAAAAAR GGAGCACTGTGACACCACA GGASCACTGTGAYRYCACAGTGSWSCAMWAAAAAAAAR Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---CCACTGTGVTGTCACAGTGSWSCAMWAAAAAAAAR GGAGCACTGTGACACCACA------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Reverse Complement Original Motif KTTTTTTTTWYTGSWSCACTGTGMKKTCACAGTGSTCC ATGTWTTCATTMAT ATGTTTTYWTTHATGSWSCACTGTGMKKTCACAGTGSTCC Direction: Forward Position #: 3 Overlap #: 12 Alignment: --KTTTTTTTTWYTGSWSCACTGTGMKKTCACAGTGSTCC ATGTWTTCATTMAT-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 50 Original Motif Original Motif ATGTTTTYWTTHATGSWSCACTGTGMKKTCACAGTGSTCC ATAGGTTTAGYATA ATAKGTTTWSHWTAATGSWSCACTGTGMKKTCACAGTGSTCC Direction: Forward Position #: 3 Overlap #: 12 Alignment: --ATGTTTTYWTTHATGSWSCACTGTGMKKTCACAGTGSTCC ATAGGTTTAGYATA---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 26 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Motif 27 Original Motif Reverse Complement TTTATGGTGAGCAT ATYAATGAAWACAT WTTAWKGWRARCAT Direction: Backward Position #: 1 Overlap #: 14 Alignment: TTTATGGTGAGCAT ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 50 Reverse Complement Original Motif ATGKTKWCYWTAAW ATAGGTTTAGYATA ATAKGTTTASYATAAW Direction: Forward Position #: 3 Overlap #: 12 Alignment: --ATGKTKWCYWTAAW ATAGGTTTAGYATA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 37 Original Motif Original Motif ATAKGTTTASYATAAW TTTAATGTYTTTWA TTWWATGTTTWBHATAAW Direction: Forward Position #: 3 Overlap #: 12 Alignment: --ATAKGTTTASYATAAW TTTAATGTYTTTWA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Original Motif Reverse Complement TTWWATGTTTWBHATAAW TTYGGAAAGCAG GCAGKTYKKDAATTWWATGTTT Direction: Backward Position #: 5 Overlap #: 8 Alignment: TTWWATGTTTWBHATAAW---- ----------TTYGGAAAGCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 27 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Motif 3 Original Motif Reverse Complement ATGTWTTCATTMAT ATTTTTTTTTTTTT ATKTTTTYWTTHWT Direction: Forward Position #: 1 Overlap #: 14 Alignment: ATGTWTTCATTMAT ATTTTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Original Motif ATKTTTTYWTTHWT TTTTTTTKTTKTTTAATTHW WTTTTTTBTTTTTTAATTHW Direction: Forward Position #: 1 Overlap #: 14 Alignment: ATKTTTTYWTTHWT------ TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Original Motif Original Motif WTTTTTTBTTTTTTAATTHW KTTTTTTKTTTTTTDAAB WTTTTTTDTTTTTTDAWKHW Direction: Forward Position #: 1 Overlap #: 18 Alignment: WTTTTTTBTTTTTTAATTHW KTTTTTTKTTTTTTDAAB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Reverse Complement Reverse Complement WHRWTDAAAAAADAAAAAAW ATGCTCACCATAAA AAAADAAAAAAWACCATAAAWHRWTDAAAAAA Direction: Backward Position #: 13 Overlap #: 8 Alignment: ------WHRWTDAAAAAADAAAAAAW ------------ATGCTCACCATAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 28 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 28 Motif 37 Original Motif Reverse Complement AAAGWCATWAA TWAAAKACATTAAA AAAAGACATTAATW Direction: Backward Position #: 2 Overlap #: 11 Alignment: --AAAGWCATWAA- TWAAAKACATTAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 35 Original Motif Reverse Complement AAAAGACATTAATW AAAATCAACAA AAAAKMMAYWAATW Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAAGACATTAATW AAAATCAACAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Reverse Complement Reverse Complement WATTWKTYRRTTTT ATTTTTTTTTTTTT AWTTTTTTTWTTTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: WATTWKTYRRTTTT ATTTTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 34 Combined Motif Original Motif Original Motif AWTTTTTTTWTTTT TTGCTGCTTTT AWTTKYTKYTTTTT Direction: Forward Position #: 3 Overlap #: 11 Alignment: AWTTTTTTTWTTTT --TTGCTGCTTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 17 Reverse Complement Original Motif AAAAAKYAKYAAWT AAWATRTATTT AAAAWRTATTWAWT Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAAAKYAKYAAWT AAWATRTATTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif AWTWAATAMWTTTT KTTTTTTKTTTTTTDAAB AWTTWDTHTWTTTTTTDAAB Direction: Forward Position #: 3 Overlap #: 12 Alignment: AWTWAATAMWTTTT------ --KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Reverse Complement AWTTWDTHTWTTTTTTDAAB TTTRKTTTHTTTTH AWTTTTTDTTTTTTTTTAAB Direction: Forward Position #: 5 Overlap #: 14 Alignment: AWTTWDTHTWTTTTTTDAAB ----TTTRKTTTHTTTTH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Reverse Complement BTTAAAAAAAAADAAAAAWT WHAATTAAARAARAAAAAAA HTDAWWAAAAAADAAAAAAW Direction: Forward Position #: 1 Overlap #: 20 Alignment: BTTAAAAAAAAADAAAAAWT WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Reverse Complement WTTTTTTHTTTTTTWWTDAH TAGTTTYAKCTTT TWKTTTTAKYTTTTWWTDAH Direction: Forward Position #: 1 Overlap #: 13 Alignment: WTTTTTTHTTTTTTWWTDAH TAGTTTYAKCTTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement TWKTTTTAKYTTTTWWTDAH TGTGTGWGTGTGTGTGTG TWKTTTTATBTKTKWDTGWVTGTGTG Direction: Forward Position #: 9 Overlap #: 12 Alignment: TWKTTTTAKYTTTTWWTDAH------ --------TGTGTGWGTGTGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 29 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 29 Motif 11 Original Motif Reverse Complement AATAACAGATT AATAGYATTTT AATARCAKWTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: AATAACAGATT AATAGYATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Reverse Complement Reverse Complement AAWYTGKTATT ATTTTTTTTTTTTT AWTTTKTTWTTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAWYTGKTATT--- ATTTTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Combined Motif Reverse Complement Reverse Complement AAAAAWAARAAAWT AAATAKATWTT AAAAATADAWAWTT Direction: Forward Position #: 3 Overlap #: 11 Alignment: AAAAAWAARAAAWT --AAATAKATWTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 31 Combined Motif Reverse Complement Original Motif AAWTWTDTATTTTT ATTCTGTRAAG AAWTWTDTAWTTYTGTRAAG Direction: Forward Position #: 10 Overlap #: 5 Alignment: AAWTWTDTATTTTT------ ---------ATTCTGTRAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Original Motif Original Motif AAWTWTDTAWTTYTGTRAAG TAASTCTWTTTTAA TAAVTHTWTWTTWHTGTRAAG Direction: Forward Position #: 2 Overlap #: 13 Alignment: -AAWTWTDTAWTTYTGTRAAG TAASTCTWTTTTAA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 37 Original Motif Original Motif TAAVTHTWTWTTWHTGTRAAG TTTAATGTYTTTWA TTWAATBTHTTTTAHTGTRAAG Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TAAVTHTWTWTTWHTGTRAAG TTTAATGTYTTTWA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Original Motif Original Motif TTWAATBTHTTTTAHTGTRAAG AAAMATTGTTT AWWHAWTGTTTTTTAHTGTRAAG Direction: Forward Position #: 2 Overlap #: 10 Alignment: -TTWAATBTHTTTTAHTGTRAAG AAAMATTGTTT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif AWWHAWTGTTTTTTAHTGTRAAG AGTGCTCCACTGTGGTGTCACAGT TCACAGTADTDMTYSWYTKTKDTKAWWHAW Direction: Backward Position #: 8 Overlap #: 17 Alignment: AWWHAWTGTTTTTTAHTGTRAAG------- ------AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 34 Combined Motif Original Motif Reverse Complement TCACAGTADTDMTYSWYTKTKDTKAWWHAW AAAAGCAGCAA TCACAGTADTDMTYSWYTKTKDTKAAAAAKCAGCAA Direction: Forward Position #: 26 Overlap #: 5 Alignment: TCACAGTADTDMTYSWYTKTKDTKAWWHAW------ -------------------------AAAAGCAGCAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Original Motif TCACAGTADTDMTYSWYTKTKDTKAAAAAKCAGCAA AAMATGTTTMAA AAAAWGYWKCAATCACAGTADTDMTYSWYTKTKDTK Direction: Backward Position #: 1 Overlap #: 12 Alignment: TCACAGTADTDMTYSWYTKTKDTKAAAAAKCAGCAA ------------------------AAMATGTTTMAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 30 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 30 Motif 27 Original Motif Original Motif CTGTTTTWAT ATGTWTTCATTMAT TMATMTGTTTTHAT Direction: Backward Position #: 5 Overlap #: 10 Alignment: CTGTTTTWAT---- ATGTWTTCATTMAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif TMATMTGTTTTHAT TTTTTTTKTTKTTTAATTHW TMWTHTKTTTTTWTTTAATTHW Direction: Forward Position #: 3 Overlap #: 12 Alignment: TMATMTGTTTTHAT-------- --TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 31 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 31 Motif 29 Original Motif Reverse Complement ATTCTGTRAAG AATCTGTTATT AWTCTGTDAWK Direction: Forward Position #: 1 Overlap #: 11 Alignment: ATTCTGTRAAG AATCTGTTATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Reverse Complement YWTDACAGAWT BTTHAAAAAAYAAAAAAR YTTHAMARAATAAAAAAR Direction: Forward Position #: 1 Overlap #: 11 Alignment: YWTDACAGAWT------- BTTHAAAAAAYAAAAAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 20 Original Motif Reverse Complement YTTHAMARAATAAAAAAR TWTTGACAYAGA THTTGACABARWAAAAAAR Direction: Forward Position #: 2 Overlap #: 11 Alignment: -YTTHAMARAATAAAAAAR TWTTGACAYAGA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ctatacggacg Combined Motif Reverse Complement Original Motif KTTTTTTWMTBTGTCAAHA CTATACGGACG KTTTTTTWMTBTGTCWATACGGACG Direction: Forward Position #: 15 Overlap #: 5 Alignment: KTTTTTTWMTBTGTCAAHA------ --------------CTATACGGACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Reverse Complement CGTCCGTATWGACABARWAAAAAAR WHAATTAAARAARAAAAAAA CGTHCRTWTARAMAAARAAAAAAAR Direction: Forward Position #: 4 Overlap #: 20 Alignment: CGTCCGTATWGACABARWAAAAAAR ---WHAATTAAARAARAAAAAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 32 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 32 Motif 31 Reverse Complement Reverse Complement TTTACTAAAT CTTKACAGAAT TTTACWRAATC Direction: Backward Position #: 1 Overlap #: 10 Alignment: -TTTACTAAAT CTTKACAGAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 50 Original Motif Reverse Complement TTTACWRAATC TATKCTAAACCTAT TWTDCTAAAYCTAT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTTACWRAATC--- TATKCTAAACCTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 37 Original Motif Original Motif TWTDCTAAAYCTAT TTTAATGTYTTTWA TTTAATGTHTTYWAAAYCTAT Direction: Forward Position #: 8 Overlap #: 7 Alignment: -------TWTDCTAAAYCTAT TTTAATGTYTTTWA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Original Motif Original Motif TTTAATGTHTTYWAAAYCTAT KTTTTTTKTTTTTTDAAB KTTTWWTGTTTTTTAAAYCTAT Direction: Forward Position #: 2 Overlap #: 17 Alignment: -TTTAATGTHTTYWAAAYCTAT KTTTTTTKTTTTTTDAAB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Original Motif Original Motif KTTTWWTGTTTTTTAAAYCTAT ATTTATTGCTA WTTTATTGYTWTTTAAAYCTAT Direction: Forward Position #: 1 Overlap #: 11 Alignment: KTTTWWTGTTTTTTAAAYCTAT ATTTATTGCTA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Original Motif WTTTATTGYTWTTTAAAYCTAT ATGTWTTCATTMAT ATKTWTTSHTTHWTAAAYCTAT Direction: Forward Position #: 1 Overlap #: 14 Alignment: WTTTATTGYTWTTTAAAYCTAT ATGTWTTCATTMAT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Reverse Complement ATAGKTTTAWHAAHSAAWAYAT WHAATTAAARAARAAAAAAA ATAGDWTTAAAAAAVAAWAMAW Direction: Forward Position #: 3 Overlap #: 20 Alignment: ATAGKTTTAWHAAHSAAWAYAT --WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 18 Reverse Complement Reverse Complement WTYTWTTVTTTTTTAAWHCTAT TTATATYATTA TTATATTATTWTTTAAWHCTAT Direction: Forward Position #: 1 Overlap #: 11 Alignment: WTYTWTTVTTTTTTAAWHCTAT TTATATYATTA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 20 Combined Motif Reverse Complement Reverse Complement ATAGDWTTAAAWAATAATATAA TWTTGACAYAGA WTTAAAWAATAATATAAATAGAATAGDWTTAAAWAATAA Direction: Backward Position #: 18 Overlap #: 5 Alignment: -------ATAGDWTTAAAWAATAATATAA -----------------TWTTGACAYAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 33 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Motif 3 Original Motif Reverse Complement ATTTATTGCTA ATTTTTTTTTTTTT WTTTWTTKYTWATT Direction: Backward Position #: 1 Overlap #: 11 Alignment: ---ATTTATTGCTA ATTTTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Combined Motif Reverse Complement Original Motif AATWAKYAAWAAAW TAATKATATAA AATAATBAWAWAAW Direction: Forward Position #: 3 Overlap #: 11 Alignment: AATWAKYAAWAAAW --TAATKATATAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Reverse Complement AATAATBAWAWAAW ATYAATGAAWACAT AWTAATGAAWAMAT Direction: Forward Position #: 1 Overlap #: 14 Alignment: AATAATBAWAWAAW ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Combined Motif Original Motif Reverse Complement AWTAATGAAWAMAT TGAAAATATGTT AWTAATGAAAAHATGTT Direction: Forward Position #: 6 Overlap #: 9 Alignment: AWTAATGAAWAMAT--- -----TGAAAATATGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Original Motif Original Motif AWTAATGAAAAHATGTT AAAGRTMAAACTA AAWRATVAAAMTATGTT Direction: Forward Position #: 1 Overlap #: 13 Alignment: AWTAATGAAAAHATGTT AAAGRTMAAACTA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Reverse Complement Original Motif AACATARTTTVATMWTT AAAMATTGTTT AAACATWGTTTVATMWTT Direction: Forward Position #: 2 Overlap #: 10 Alignment: -AACATARTTTVATMWTT AAAMATTGTTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Reverse Complement AAWRATVAAACWATGTTT WHAATTAAARAARAAAAAAA AWHRATDAAAMAAWRWWWAAA Direction: Forward Position #: 2 Overlap #: 17 Alignment: AAWRATVAAACWATGTTT--- -WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif TTTWWWKWTTYTTTDATKHWT KTTTTTTKTTTTTTDAAB TTTTTTTTTTTTTTKAWWBWT Direction: Forward Position #: 2 Overlap #: 18 Alignment: TTTWWWKWTTYTTTDATKHWT -KTTTTTTKTTTTTTDAAB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Original Motif Original Motif TTTTTTTTTTTTTTKAWWBWT TAASTCTWTTTTAA TTTWABTYTTTTTTAAWWBWT Direction: Forward Position #: 3 Overlap #: 14 Alignment: TTTTTTTTTTTTTTKAWWBWT --TAASTCTWTTTTAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 37 Combined Motif Original Motif Original Motif TTTWABTYTTTTTTAAWWBWT TTTAATGTYTTTWA TTTTTAWTKTTTTTWAWWBWT Direction: Forward Position #: 3 Overlap #: 14 Alignment: TTTWABTYTTTTTTAAWWBWT --TTTAATGTYTTTWA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 34 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 34 Motif 35 Original Motif Original Motif TTGCTGCTTTT TTGTTGATTTT TTGYTGMTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTGCTGCTTTT TTGTTGATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 37 Original Motif Original Motif TTGYTGMTTTT TTTAATGTYTTTWA TTKHWKVTTTTTWA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTGYTGMTTTT--- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Reverse Complement TTKHWKVTTTTTWA TTTRKTTTHTTTTH TTTTTGBTTTTTTWTH Direction: Forward Position #: 3 Overlap #: 12 Alignment: TTKHWKVTTTTTWA-- --TTTRKTTTHTTTTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 28 Original Motif Reverse Complement TTTTTGBTTTTTTWTH TTWATGWCTTT TTTATGDYTTTTTWTH Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTTTTGBTTTTTTWTH TTWATGWCTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Original Motif HAWAAAAAKDCATAAA AAAAAAAAAAAAAT HAWAAAAADAMAAAAAT Direction: Forward Position #: 4 Overlap #: 13 Alignment: HAWAAAAAKDCATAAA- ---AAAAAAAAAAAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif ATTTTTYTDTTTTTWTH KTTTTTTKTTTTTTDAAB ATTTTTTTTTTTTTTTTDAAB Direction: Forward Position #: 4 Overlap #: 14 Alignment: ATTTTTYTDTTTTTWTH---- ---KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif ATTTTTTTTTTTTTTTTDAAB TTTTTTTKTTKTTTAATTHW WTTTTTTTTTTTTTWWTKAAB Direction: Forward Position #: 1 Overlap #: 20 Alignment: ATTTTTTTTTTTTTTTTDAAB TTTTTTTKTTKTTTAATTHW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Reverse Complement Reverse Complement BTTRAWWAAAAAAAAAAAAAW HVCDBBDBCAGCAG BHYDDHDAMARMARAAAAAAW Direction: Forward Position #: 1 Overlap #: 14 Alignment: BTTRAWWAAAAAAAAAAAAAW HVCDBBDBCAGCAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 29 Original Motif Original Motif BHYDDHDAMARMARAAAAAAW AATAACAGATT TAAWAAMARAWBHYDDHDAMAR Direction: Backward Position #: 2 Overlap #: 10 Alignment: BHYDDHDAMARMARAAAAAAW- -----------AATAACAGATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Original Motif Original Motif TAAWAAMARAWBHYDDHDAMAR AAMATGTTTMAA TAAWAAMAKRTTTMAAHDAMAR Direction: Forward Position #: 5 Overlap #: 12 Alignment: TAAWAAMARAWBHYDDHDAMAR ----AAMATGTTTMAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 35 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 35 Motif 34 Original Motif Original Motif TTGTTGATTTT TTGCTGCTTTT TTGYTGMTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTGTTGATTTT TTGCTGCTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Original Motif AAAAYCAKCAA AAAAAAAAAAAAAT AAAAHMADMAAAAAT Direction: Forward Position #: 2 Overlap #: 10 Alignment: AAAAYCAKCAA---- -AAAAAAAAAAAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Reverse Complement AAAAHMADMAAAAAT WHAATTAAARAARAAAAAAA WHAAWAAAAAAAVAAAAAWA Direction: Forward Position #: 5 Overlap #: 15 Alignment: ----AAAAHMADMAAAAAT- WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 28 Original Motif Original Motif WHAAWAAAAAAAVAAAAAWA AAAGWCATWAA AAAGWMAWAAAAVAAAAAWA Direction: Forward Position #: 1 Overlap #: 11 Alignment: WHAAWAAAAAAAVAAAAAWA AAAGWCATWAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 37 Combined Motif Original Motif Reverse Complement AAAGWMAWAAAAVAAAAAWA TWAAAKACATTAAA AAAGTHAAADAMAWWAAAWA Direction: Forward Position #: 5 Overlap #: 14 Alignment: AAAGWMAWAAAAVAAAAAWA ----TWAAAKACATTAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement AAAGTHAAADAMAWWAAAWA BTTHAAAAAAYAAAAAAR AAAGBTWWAAAAAAWAAAAAAR Direction: Forward Position #: 5 Overlap #: 16 Alignment: AAAGTHAAADAMAWWAAAWA-- ----BTTHAAAAAAYAAAAAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Original Motif AAAGBTWWAAAAAAWAAAAAAR HAAAAHAAARMAAA AAAGHWAAAAAAAAMAAAAAAR Direction: Forward Position #: 5 Overlap #: 14 Alignment: AAAGBTWWAAAAAAWAAAAAAR ----HAAAAHAAARMAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 36 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 36 Motif 37 Original Motif Original Motif TTACWGTTT TTTAATGTYTTTWA TTWATTAMTGTTTT Direction: Backward Position #: 5 Overlap #: 9 Alignment: -TTACWGTTT---- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 34 Reverse Complement Reverse Complement AAAACAYTAATWAA AAAAGCAGCAA AAAARCABYAATWAA Direction: Forward Position #: 2 Overlap #: 10 Alignment: -AAAACAYTAATWAA AAAAGCAGCAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 29 Original Motif Original Motif AAAARCABYAATWAA AATAACAGATT AAWAACAGHWWTWAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAARCABYAATWAA AATAACAGATT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 31 Combined Motif Original Motif Reverse Complement AAWAACAGHWWTWAA CTTKACAGAAT AAWAACAGHHTTDAMAGAAT Direction: Forward Position #: 10 Overlap #: 6 Alignment: AAWAACAGHWWTWAA----- ---------CTTKACAGAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif ATTCTYTDAADHCTGTTWTT KTTTTTTKTTTTTTDAAB ATTCTYTDWWTTYTKKTTTTTTDAAB Direction: Forward Position #: 9 Overlap #: 12 Alignment: ATTCTYTDAADHCTGTTWTT------ --------KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 32 Reverse Complement Original Motif BTTHAAAAAARYAMAAWWDAKAGAAT ATTTAGTAAA VTTTARWAAARYAMAAWWDAKAGAAT Direction: Forward Position #: 1 Overlap #: 10 Alignment: BTTHAAAAAARYAMAAWWDAKAGAAT ATTTAGTAAA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif VTTTARWAAARYAMAAWWDAKAGAAT AAAAAAAAAAAAAT VTTTAAAAAAAMAAAAATDAKAGAAT Direction: Forward Position #: 5 Overlap #: 14 Alignment: VTTTARWAAARYAMAAWWDAKAGAAT ----AAAAAAAAAAAAAT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Reverse Complement Original Motif ATTCTYTDATTTTTYTTTTTTTAAAB ATTTATTGCTA ATTYWTTGMTWTTTYTTTTTTTAAAB Direction: Forward Position #: 1 Overlap #: 11 Alignment: ATTCTYTDATTTTTYTTTTTTTAAAB ATTTATTGCTA--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 28 Combined Motif Original Motif Reverse Complement ATTYWTTGMTWTTTYTTTTTTTAAAB TTWATGWCTTT ATTYWTTDATGTYTTTTTTTTTAAAB Direction: Forward Position #: 6 Overlap #: 11 Alignment: ATTYWTTGMTWTTTYTTTTTTTAAAB -----TTWATGWCTTT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Combined Motif Reverse Complement Reverse Complement VTTTAAAAAAAAAKACATDAAWKAAT AAACAATYTTT VTTTAAAAAAMAATHTWTDAAWKAAT Direction: Forward Position #: 8 Overlap #: 11 Alignment: VTTTAAAAAAAAAKACATDAAWKAAT -------AAACAATYTTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 37 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 37 Motif 8 Reverse Complement Original Motif TWAAAKACATTAAA HAAAAHAAARMAAA TWAAADAMADYAAA Direction: Backward Position #: 1 Overlap #: 14 Alignment: TWAAAKACATTAAA HAAAAHAAARMAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Reverse Complement TWAAADAMADYAAA WHAATTAAARAARAAAAAAA WWAAWDAAADAAAAAAAAAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: TWAAADAMADYAAA------ WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Original Motif Reverse Complement WWAAWDAAADAAAAAAAAAA BTTHAAAAAAYAAAAAAR BTTWAAAAAAMAAAAAAAAAAAA Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---WWAAWDAAADAAAAAAAAAA BTTHAAAAAAYAAAAAAR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement TTTTTTTTTTTTYTTTTTTWAAB ATTTTTTTTTTTTT WTTTTTTTTTTTTTTTTTTWAAB Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTTTTTTTTTTTYTTTTTTWAAB ATTTTTTTTTTTTT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Original Motif WTTTTTTTTTTTTTTTTTTWAAB ATGTWTTCATTMAT ATKTTTTYWTTHWTTTTTTWAAB Direction: Forward Position #: 1 Overlap #: 14 Alignment: WTTTTTTTTTTTTTTTTTTWAAB ATGTWTTCATTMAT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Original Motif Original Motif ATKTTTTYWTTHWTTTTTTWAAB TAASTCTWTTTTAA TAWBTYTTTTTTAATTTTTTWAAB Direction: Forward Position #: 2 Overlap #: 13 Alignment: -ATKTTTTYWTTHWTTTTTTWAAB TAASTCTWTTTTAA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Original Motif Original Motif TAWBTYTTTTTTAATTTTTTWAAB TTTATGGTGAGCAT TAWBTYTTTTTTAATTTTTTTAWGGTGAGCAT Direction: Forward Position #: 19 Overlap #: 6 Alignment: TAWBTYTTTTTTAATTTTTTWAAB-------- ------------------TTTATGGTGAGCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Original Motif Reverse Complement TAWBTYTTTTTTAATTTTTTTAWGGTGAGCAT TTYAAACATYTT TAWBTYTTYWWWMATYTTTTTAWGGTGAGCAT Direction: Forward Position #: 7 Overlap #: 12 Alignment: TAWBTYTTTTTTAATTTTTTTAWGGTGAGCAT ------TTYAAACATYTT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Reverse Complement TAWBTYTTYWWWMATYTTTTTAWGGTGAGCAT AGTGSWSCACTGTGAMAMCACAGTG TAWBTYTTYWWWMATYTTTTTAAGKKGAGCAYTGTGAMAMCACAGTG Direction: Forward Position #: 23 Overlap #: 10 Alignment: TAWBTYTTYWWWMATYTTTTTAWGGTGAGCAT--------------- ----------------------AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Original Motif Reverse Complement TAWBTYTTYWWWMATYTTTTTAAGKKGAGCAYTGTGAMAMCACAGTG TAGTTTYAKCTTT TAWBTYTWKTTTYATCTTTTTAAGKKGAGCAYTGTGAMAMCACAGTG Direction: Forward Position #: 7 Overlap #: 13 Alignment: TAWBTYTTYWWWMATYTTTTTAAGKKGAGCAYTGTGAMAMCACAGTG ------TAGTTTYAKCTTT---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 38 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 38 Motif 19 Reverse Complement Reverse Complement TCATCTTT TAGTTTYAKCTTT TAGTTTCATCTTT Direction: Forward Position #: 6 Overlap #: 8 Alignment: -----TCATCTTT TAGTTTYAKCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- taaacgatgcc Combined Motif Original Motif Reverse Complement TAGTTTCATCTTT GGCATCGTTTA TAGTKKCATCKTTTA Direction: Forward Position #: 5 Overlap #: 9 Alignment: TAGTTTCATCTTT-- ----GGCATCGTTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 13 Reverse Complement Reverse Complement TAAAYGATGYYACTA TGAAAATATGTT TKAAAHKATGTTACTA Direction: Forward Position #: 2 Overlap #: 11 Alignment: -TAAAYGATGYYACTA TGAAAATATGTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Original Motif TKAAAHKATGTTACTA AAAGGTCAAAGGTCAAC AAAGGTCAAAGGTBAAMHKATGTTACTA Direction: Forward Position #: 13 Overlap #: 5 Alignment: ------------TKAAAHKATGTTACTA AAAGGTCAAAGGTCAAC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Reverse Complement AAAGGTCAAAGGTBAAMHKATGTTACTA AKGYYCAAAGRTCA AARGGTCAAAGGTCAAMHKATGTTACTA Direction: Forward Position #: 2 Overlap #: 14 Alignment: AAAGGTCAAAGGTBAAMHKATGTTACTA -AKGYYCAAAGRTCA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Reverse Complement Original Motif TAGTAACATYHYTTGACCTTTGACCKTT TAASTCTWTTTTAA TAGTAACWYTWTTTKAMCTTTGACCKTT Direction: Forward Position #: 4 Overlap #: 14 Alignment: TAGTAACATYHYTTGACCTTTGACCKTT ---TAASTCTWTTTTAA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 37 Original Motif Original Motif TAGTAACWYTWTTTKAMCTTTGACCKTT TTTAATGTYTTTWA TTTARTRWCTTTWWTTKAMCTTTGACCKTT Direction: Forward Position #: 3 Overlap #: 12 Alignment: --TAGTAACWYTWTTTKAMCTTTGACCKTT TTTAATGTYTTTWA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Combined Motif Original Motif Original Motif TTTARTRWCTTTWWTTKAMCTTTGACCKTT AAAMATTGTTT TTTARWAACWTTDTTTKAMCTTTGACCKTT Direction: Forward Position #: 6 Overlap #: 11 Alignment: TTTARTRWCTTTWWTTKAMCTTTGACCKTT -----AAAMATTGTTT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 39 Combined Motif Reverse Complement Reverse Complement AARGGTCAAAGYTRAAAHAAWGTTWKTAAA CAAGAKCATCT AARGGTCAAAGYTRAAAHAAWGTTWKYAARAKCATCT Direction: Forward Position #: 27 Overlap #: 4 Alignment: AARGGTCAAAGYTRAAAHAAWGTTWKTAAA------- --------------------------CAAGAKCATCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Original Motif AGATGYTKTTKYWAACWTTDTTTKAMCTTTGACCKTT AAMATGTTTMAA AAVATGTTTHWDYWAACWTTDTTTKAMCTTTGACCKTT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -AGATGYTKTTKYWAACWTTDTTTKAMCTTTGACCKTT AAMATGTTTMAA-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 39 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 39 Motif 37 Original Motif Original Motif AGATGYTCTTG TTTAATGTYTTTWA AWRATGTTYTTDTT Direction: Backward Position #: 2 Overlap #: 11 Alignment: --AGATGYTCTTG- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 40 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 40 AmTGTGACACCACAGT Original Motif Reverse Complement TGGTGTCA ACTGTGGTGTCACART CARTTGGTGTCAACTG Direction: Backward Position #: 5 Overlap #: 8 Alignment: ----TGGTGTCA---- ACTGTGGTGTCACART ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Reverse Complement CAGTTGACACCAAMTG ACTGTGACACCACAGTGGAGCACT MMKKTGACACCAMAKKGGAGCACT Direction: Forward Position #: 1 Overlap #: 16 Alignment: CAGTTGACACCAAMTG-------- ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Original Motif MMKKTGACACCAMAKKGGAGCACT TGTGGTGTCACAGTGCTCC MMTKTGRYRYCACAGTGSWSCACT Direction: Forward Position #: 3 Overlap #: 19 Alignment: MMKKTGACACCAMAKKGGAGCACT --TGTGGTGTCACAGTGCTCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement MMTKTGRYRYCACAGTGSWSCACT CCACTGTGVTGTCACAGTGCTCCA CCAMTGTGRTGTCACAGTGCTSCACT Direction: Forward Position #: 3 Overlap #: 22 Alignment: --MMTKTGRYRYCACAGTGSWSCACT CCACTGTGVTGTCACAGTGCTCCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement AGTGSAGCACTGTGACAMCACARTGG AGTGSWSCACTGTGAMAMCACAGTG AGTGSWGCACTGTGAMAMCACAGTGG Direction: Forward Position #: 1 Overlap #: 25 Alignment: AGTGSAGCACTGTGACAMCACARTGG AGTGSWSCACTGTGAMAMCACAGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 20 Combined Motif Reverse Complement Reverse Complement CCACTGTGRTRTCACAGTGCWSCACT TWTTGACAYAGA CCACTGTDTTGWCACAGWGCWSCACT Direction: Forward Position #: 7 Overlap #: 12 Alignment: CCACTGTGRTRTCACAGTGCWSCACT ------TWTTGACAYAGA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Reverse Complement Original Motif AGTGSWGCWCTGTGWCAAHACAGTGG AAAGRTMAAACTA AGTGSWGCWCTGTGWCAAHACARWGRTMAAACTA Direction: Forward Position #: 22 Overlap #: 5 Alignment: AGTGSWGCWCTGTGWCAAHACAGTGG-------- ---------------------AAAGRTMAAACTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Reverse Complement AGTGSWGCWCTGTGWCAAHACARWGRTMAAACTA ATYAATGAAWACAT WACATMWHARKKAAAGTGSWGCWCTGTGWCAAHACARWG Direction: Backward Position #: 6 Overlap #: 9 Alignment: AGTGSWGCWCTGTGWCAAHACARWGRTMAAACTA----- -------------------------ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 41 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 41 atactttggc Reverse Complement Reverse Complement CCAAAGT GCCAAAGTAT ATCCAAAGTG Direction: Backward Position #: 3 Overlap #: 7 Alignment: -CCAAAGT-- GCCAAAGTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwCCAmAGTCmt Original Motif Original Motif ATCCAAAGTG DDCCAMAGTCHB ATCCAAAGTSHB Direction: Forward Position #: 1 Overlap #: 10 Alignment: ATCCAAAGTG-- DDCCAMAGTCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif ATCCAAAGTSHB AGTGCTCCACTGTGGTGTCACAGT AGTGMTCCAMWGTGBTGTCACAGT Direction: Forward Position #: 5 Overlap #: 12 Alignment: ----ATCCAAAGTSHB-------- AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Reverse Complement Original Motif ACTGTGACABCACWRTGGARCACT AMTGTGACACCACAGT ACTGTGACACCACAGTGGARCACT Direction: Forward Position #: 1 Overlap #: 16 Alignment: ACTGTGACABCACWRTGGARCACT AMTGTGACACCACAGT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Reverse Complement AGTGMTCCACTGTGGTGTCACAGT AGTGCTCCACTGTGDTG AGTGCTCCACTGTGGTGTCACAGT Direction: Forward Position #: 1 Overlap #: 17 Alignment: AGTGMTCCACTGTGGTGTCACAGT AGTGCTCCACTGTGDTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif AGTGCTCCACTGTGGTGTCACAGT CAGTGCTCCACTGTGBT CAGTGCTCCACTGTGGTGTCACAGT Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AGTGCTCCACTGTGGTGTCACAGT CAGTGCTCCACTGTGBT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Reverse Complement CAGTGCTCCACTGTGGTGTCACAGT AKGYYCAAAGRTCA TCAWGKGBYRWMRVCAGTGCTCCACTGT Direction: Backward Position #: 4 Overlap #: 11 Alignment: CAGTGCTCCACTGTGGTGTCACAGT--- --------------AKGYYCAAAGRTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 42 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 42 Motif 37 Reverse Complement Reverse Complement CAAAKTYAT TWAAAKACATTAAA THAAAKWCATTAAA Direction: Forward Position #: 2 Overlap #: 9 Alignment: -CAAAKTYAT---- TWAAAKACATTAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 39 Combined Motif Original Motif Reverse Complement THAAAKWCATTAAA CAAGAKCATCT TCAARDDCATYWAA Direction: Forward Position #: 2 Overlap #: 11 Alignment: THAAAKWCATTAAA -CAAGAKCATCT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 22 Combined Motif Original Motif Original Motif TCAARDDCATYWAA CAAAGTCCAGC TCAARDDCATCAAAGTCCAGC Direction: Forward Position #: 11 Overlap #: 4 Alignment: TCAARDDCATYWAA------- ----------CAAAGTCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 12 Original Motif Original Motif TCAARDDCATCAAAGTCCAGC TGAAAATSCTT TSAAAATCMTYAAAGTCCAGC Direction: Forward Position #: 1 Overlap #: 11 Alignment: TCAARDDCATCAAAGTCCAGC TGAAAATSCTT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif TSAAAATCMTYAAAGTCCAGC AAAAAAAAAAAAAT TSAAAAWMAWWAAARTCCAGC Direction: Forward Position #: 3 Overlap #: 14 Alignment: TSAAAATCMTYAAAGTCCAGC --AAAAAAAAAAAAAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwCCAmAGTCmt Combined Motif Original Motif Original Motif TSAAAAWMAWWAAARTCCAGC DDCCAMAGTCHB GCVAHCAAAGTCCATSAAAAW Direction: Backward Position #: 3 Overlap #: 12 Alignment: TSAAAAWMAWWAAARTCCAGC -------DDCCAMAGTCHB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Combined Motif Original Motif Original Motif GCVAHCAAAGTCCATSAAAAW TAATKATATAA GCVAHCAAAGTCCATSAWAATKATATAA Direction: Forward Position #: 18 Overlap #: 4 Alignment: GCVAHCAAAGTCCATSAAAAW------- -----------------TAATKATATAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- atactttggc Combined Motif Original Motif Reverse Complement GCVAHCAAAGTCCATSAWAATKATATAA GCCAAAGTAT GCVRCCAAAGTMYATSAWAATKATATAA Direction: Forward Position #: 4 Overlap #: 10 Alignment: GCVAHCAAAGTCCATSAWAATKATATAA ---GCCAAAGTAT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Combined Motif Original Motif Original Motif GCVRCCAAAGTMYATSAWAATKATATAA AAWATRTATTT GCVRCCAAARTATATTWWAATKATATAA Direction: Forward Position #: 7 Overlap #: 11 Alignment: GCVRCCAAAGTMYATSAWAATKATATAA ------AAWATRTATTT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 50 Combined Motif Reverse Complement Original Motif TTATATYATTWWAATATAKTTTGGMBGC ATAGGTTTAGYATA TTATAKBWTTADHATATAKTTTGGMBGC Direction: Forward Position #: 3 Overlap #: 14 Alignment: TTATATYATTWWAATATAKTTTGGMBGC --ATAGGTTTAGYATA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 43 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 43 TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement GCTGTGAC GGAGCACTGTGACACCACA GGAGCRCTGTGACACCACA Direction: Forward Position #: 6 Overlap #: 8 Alignment: -----GCTGTGAC------ GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Reverse Complement GGAGCRCTGTGACACCACA ACTGTGGTGTCACART RSWGYGSTGTSACAVYACA Direction: Forward Position #: 1 Overlap #: 16 Alignment: GGAGCRCTGTGACACCACA ACTGTGGTGTCACART--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement RSWGYGSTGTSACAVYACA ACTGTGACACCACAGTGGAGCACT ASTGTGAYRYCACAGTRSAGCACT Direction: Forward Position #: 1 Overlap #: 19 Alignment: RSWGYGSTGTSACAVYACA----- ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif ASTGTGAYRYCACAGTRSAGCACT TGGAGCACTGTGACAVCACAGTGG TRSWGYRMTGTSACAVYACAGYRST Direction: Forward Position #: 2 Overlap #: 23 Alignment: -ASTGTGAYRYCACAGTRSAGCACT TGGAGCACTGTGACAVCACAGTGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Reverse Complement Original Motif ASKMCTGTKVTGTSACARKKCWSMA AAAGGTCAAAGGTCAAC AWDVKGTCAMAGGTCAVCASKMCTG Direction: Backward Position #: 2 Overlap #: 17 Alignment: ASKMCTGTKVTGTSACARKKCWSMA -------AAAGGTCAAAGGTCAAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 44 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 44 Motif 22 Original Motif Original Motif AAGTTCA CAAAGTCCAGC GCAAGTYCACA Direction: Backward Position #: 3 Overlap #: 7 Alignment: --AAGTTCA-- CAAAGTCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Original Motif Original Motif GCAAGTYCACA AAAGGTCAAAGGTCAAC GMAAGKTCAMAGGTCAAC Direction: Forward Position #: 2 Overlap #: 10 Alignment: GCAAGTYCACA------- -AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Reverse Complement GMAAGKTCAMAGGTCAAC AKGYYCAAAGRTCA GMAAGKTCAAAGGTCAAC Direction: Forward Position #: 3 Overlap #: 14 Alignment: GMAAGKTCAMAGGTCAAC --AKGYYCAAAGRTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb Combined Motif Reverse Complement Reverse Complement GTTGACCTTTGARCTTRC TGACCTTGMBBB GTTGACCTTKRVVCTTRC Direction: Forward Position #: 3 Overlap #: 12 Alignment: GTTGACCTTTGARCTTRC --TGACCTTGMBBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Original Motif GMAAGBBMRAAGGTCAAC AAAGRTMAAACTA CTAAAAGAWVRWMGMAAGBBM Direction: Backward Position #: 4 Overlap #: 10 Alignment: GMAAGBBMRAAGGTCAAC--- --------AAAGRTMAAACTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 45 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Motif 27 Original Motif Reverse Complement TGGAGGAAA ATYAATGAAWACAT ATYAWKGARDAMAT Direction: Forward Position #: 5 Overlap #: 9 Alignment: ----TGGAGGAAA- ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 32 Reverse Complement Original Motif ATYTHKTCYWTKAT ATTTAGTAAA ATTTAGTMHATKAT Direction: Forward Position #: 1 Overlap #: 10 Alignment: ATYTHKTCYWTKAT ATTTAGTAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Reverse Complement Reverse Complement ATYATHYACTAAAT ABCACAGTGGAGCACTG ABCACAGTGGAKCAHTBACTAAAT Direction: Forward Position #: 11 Overlap #: 7 Alignment: ----------ATYATHYACTAAAT ABCACAGTGGAGCACTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif ABCACAGTGGAKCAHTBACTAAAT AGTGCTCCACTGTGGTGTCACAGT AGTGCWCCACWGTGGWGYMAYDRYTAAAT Direction: Forward Position #: 6 Overlap #: 19 Alignment: -----ABCACAGTGGAKCAHTBACTAAAT AGTGCTCCACTGTGGTGTCACAGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Original Motif Reverse Complement AGTGCWCCACWGTGGWGYMAYDRYTAAAT AGTGCTCCACTGTGDTG AGTGCTCCACTGTGGTGYMAYDRYTAAAT Direction: Forward Position #: 1 Overlap #: 17 Alignment: AGTGCWCCACWGTGGWGYMAYDRYTAAAT AGTGCTCCACTGTGDTG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif ATTTAMKDKTYMCACCACAGTGGAGCACT TGGAGCACTGTGACAVCACAGTGG TRKWKMABTGTBACACCACAGTGGAGCACT Direction: Forward Position #: 2 Overlap #: 23 Alignment: -ATTTAMKDKTYMCACCACAGTGGAGCACT TGGAGCACTGTGACAVCACAGTGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Original Motif Reverse Complement TRKWKMABTGTBACACCACAGTGGAGCACT TAGCAATAAAT TRKWKMABTGTBACACCACAGTGKAGCAMTAAAT Direction: Forward Position #: 24 Overlap #: 7 Alignment: TRKWKMABTGTBACACCACAGTGGAGCACT---- -----------------------TAGCAATAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 50 Combined Motif Original Motif Original Motif TRKWKMABTGTBACACCACAGTGKAGCAMTAAAT ATAGGTTTAGYATA TRKWKMABTGTBACACCACAGTGKAGCAATARRTTTAGYATA Direction: Forward Position #: 29 Overlap #: 6 Alignment: TRKWKMABTGTBACACCACAGTGKAGCAMTAAAT-------- ----------------------------ATAGGTTTAGYATA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 46 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 46 Motif 27 Original Motif Reverse Complement TGAATGAA ATYAATGAAWACAT ATYAATGAATRMAT Direction: Forward Position #: 6 Overlap #: 8 Alignment: -----TGAATGAA- ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 48 Original Motif Original Motif ATYAATGAATRMAT AATGKAAGAA AATBDAWGAATRMAT Direction: Forward Position #: 2 Overlap #: 9 Alignment: -ATYAATGAATRMAT AATGKAAGAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Original Motif Original Motif AATBDAWGAATRMAT TGGAGGAAA AATGGADGAAWRMAT Direction: Forward Position #: 3 Overlap #: 9 Alignment: AATBDAWGAATRMAT --TGGAGGAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 31 Original Motif Reverse Complement AATGGADGAAWRMAT CTTKACAGAAT MWTGAMAGAATRMAT Direction: Forward Position #: 1 Overlap #: 11 Alignment: AATGGADGAAWRMAT CTTKACAGAAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Original Motif MWTGAMAGAATRMAT AAMATGTTTMAA AAMATGWHWVAATRMAT Direction: Forward Position #: 3 Overlap #: 10 Alignment: --MWTGAMAGAATRMAT AAMATGTTTMAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 37 Original Motif Reverse Complement AAMATGWHWVAATRMAT TWAAAKACATTAAA TWAAADWSATTAAATRMAT Direction: Forward Position #: 3 Overlap #: 12 Alignment: --AAMATGWHWVAATRMAT TWAAAKACATTAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Direction: Backward Position #: 4 Overlap #: 8 Alignment: --AAMATGWHWVAATRMAT TWAAAKACATTAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Direction: Forward Position #: 2 Overlap #: 8 Alignment: --AAMATGWHWVAATRMAT TWAAAKACATTAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Direction: Backward Position #: 2 Overlap #: 8 Alignment: --AAMATGWHWVAATRMAT TWAAAKACATTAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Direction: Forward Position #: 1 Overlap #: 8 Alignment: --AAMATGWHWVAATRMAT TWAAAKACATTAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 47 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 47 Motif 8 Reverse Complement Reverse Complement TGCCTTTCYTT TTTRKTTTHTTTTH THTKSCTTTCTTTT Direction: Backward Position #: 3 Overlap #: 11 Alignment: -TGCCTTTCYTT-- TTTRKTTTHTTTTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Original Motif Original Motif THTKSCTTTCTTTT CTGCTTTCCMAA CMAAYTGCTTTCTHTKSC Direction: Backward Position #: 5 Overlap #: 8 Alignment: THTKSCTTTCTTTT---- ------CTGCTTTCCMAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Original Motif GSYAHAGAAAGCAKTTYG AAAAAAAAAAAAAT GAMAAARAAARMADTTYG Direction: Forward Position #: 2 Overlap #: 14 Alignment: GSYAHAGAAAGCAKTTYG -AAAAAAAAAAAAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif CKAADTYKTTTKTTTYTC TTTTTTTKTTKTTTAATTHW YTWWTTTKTTTTTTTWTYHW Direction: Forward Position #: 1 Overlap #: 18 Alignment: CKAADTYKTTTKTTTYTC-- TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 28 Original Motif Reverse Complement YTWWTTTKTTTTTTTWTYHW TTWATGWCTTT TTWATKTCTTTTTTTWTYHW Direction: Forward Position #: 1 Overlap #: 11 Alignment: YTWWTTTKTTTTTTTWTYHW TTWATGWCTTT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Reverse Complement Reverse Complement WHMAWAAAAAAAGAYATWAA ATYAATGAAWACAT ATYAATRAAAAMATAYATWAA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -WHMAWAAAAAAAGAYATWAA ATYAATGAAWACAT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 Combined Motif Reverse Complement Reverse Complement TTWATKTATRTTTTMATTKAT AAGSATTTTCA TTWATRAGBATTTTCATTKAT Direction: Forward Position #: 6 Overlap #: 11 Alignment: TTWATKTATRTTTTMATTKAT -----AAGSATTTTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 37 Combined Motif Reverse Complement Reverse Complement ATYAATGAAAATVCTKATWAA TWAAAKACATTAAA ATWAAWGAMAWTAAAKATWAA Direction: Forward Position #: 2 Overlap #: 14 Alignment: ATYAATGAAAATVCTKATWAA -TWAAAKACATTAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Original Motif Reverse Complement ATWAAWGAMAWTAAAKATWAA TTAAAAWAGASTTA WTAAAADAGABTWAAKATWAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: ATWAAWGAMAWTAAAKATWAA TTAAAAWAGASTTA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb Combined Motif Original Motif Original Motif WTAAAADAGABTWAAKATWAA VBBYCAAGGTCA AVABTHAAGRTHAWTAAAADA Direction: Backward Position #: 2 Overlap #: 12 Alignment: WTAAAADAGABTWAAKATWAA --------VBBYCAAGGTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 48 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 48 Motif 18 Reverse Complement Reverse Complement TTCTTYCATT TTATATYATTA TTMTWTCATTA Direction: Forward Position #: 1 Overlap #: 10 Alignment: TTCTTYCATT- TTATATYATTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Original Motif TTMTWTCATTA ATGTWTTCATTMAT ATKHTTTCATTAAT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -TTMTWTCATTA-- ATGTWTTCATTMAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 49 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 TFM13 Reverse Complement Reverse Complement TTAAAAWAGASTTA WHAATTAAARAARAAAAAAA WHAATTAAAAAAGAVWWAAA Direction: Forward Position #: 5 Overlap #: 14 Alignment: ----TTAAAAWAGASTTA-- WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif TTTWWBTCTTTTTTAATTDW KTTTTTTKTTTTTTDAAB TTTWWTTYTTTTTTWWTTDAAB Direction: Forward Position #: 5 Overlap #: 16 Alignment: TTTWWBTCTTTTTTAATTDW-- ----KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 37 Original Motif Original Motif TTTWWTTYTTTTTTWWTTDAAB TTTAATGTYTTTWA TTTAATKTTTTTTWWWTTDAAB Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTTWWTTYTTTTTTWWTTDAAB TTTAATGTYTTTWA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Reverse Complement TTTAATKTTTTTTWWWTTDAAB TTTRKTTTHTTTTH TTTRDTTTTTTTTWWWTTDAAB Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTTAATKTTTTTTWWWTTDAAB TTTRKTTTHTTTTH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Original Motif Original Motif TTTRDTTTTTTTTWWWTTDAAB ATGTWTTCATTMAT TTTRATKTWTTYWTTAWTDAAB Direction: Forward Position #: 5 Overlap #: 14 Alignment: TTTRDTTTTTTTTWWWTTDAAB ----ATGTWTTCATTMAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 50 Reverse Complement Reverse Complement BTTHAWTAAWKAAWAYATKAAA TATKCTAAACCTAT CCTATWATDMTAMABTTHAWTAAWKAA Direction: Backward Position #: 6 Overlap #: 9 Alignment: BTTHAWTAAWKAAWAYATKAAA----- -------------TATKCTAAACCTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 50 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 50 Motif 26 Original Motif Original Motif ATAGGTTTAGYATA TTTATGGTGAGCAT ATWKRTKKWGHRYAT Direction: Forward Position #: 2 Overlap #: 13 Alignment: ATAGGTTTAGYATA- -TTTATGGTGAGCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Reverse Complement Reverse Complement ATKKHCWYYAKYWAT TAGTTTYAKCTTT ATTDBYTTYAKCTWT Direction: Forward Position #: 3 Overlap #: 13 Alignment: ATKKHCWYYAKYWAT --TAGTTTYAKCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Original Motif Original Motif ATTDBYTTYAKCTWT TAASTCTWTTTTAA TTTAATWASTYTHWATTDBY Direction: Backward Position #: 6 Overlap #: 9 Alignment: ATTDBYTTYAKCTWT----- ------TAASTCTWTTTTAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Reverse Complement Reverse Complement KBDAATWHAKASTWATTAAA ATYAATGAAWACAT DTBAATDAADACWTATTAAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: KBDAATWHAKASTWATTAAA ATYAATGAAWACAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 37 Combined Motif Original Motif Original Motif DTBAATDAADACWTATTAAA TTTAATGTYTTTWA DTBAWTTAATRYHTWTTAAA Direction: Forward Position #: 5 Overlap #: 14 Alignment: DTBAATDAADACWTATTAAA ----TTTAATGTYTTTWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Reverse Complement TTTAAWAHMMATTAAWTHAD TTYAAACATYTT TTTAAAMAWHWTTAAWTHAD Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTTAAWAHMMATTAAWTHAD TTYAAACATYTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Original Motif TTTAAAMAWHWTTAAWTHAD ACAACACATTT TTWMAACACATTTAAWTHAD Direction: Forward Position #: 3 Overlap #: 11 Alignment: TTTAAAMAWHWTTAAWTHAD --ACAACACATTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Direction: Backward Position #: 1 Overlap #: 11 Alignment: TTTAAAMAWHWTTAAWTHAD --ACAACACATTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTTAAAMAWHWTTAAWTHAD --ACAACACATTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Direction: Backward Position #: 2 Overlap #: 11 Alignment: TTTAAAMAWHWTTAAWTHAD --ACAACACATTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 51 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A PPARGRXRA Original Motif Original Motif RGGBCAAAGKYCA BTRGGDCARAGGKCA BTRGGBCAAAGGTCA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --RGGBCAAAGKYCA BTRGGDCARAGGKCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif TGACCTTTGBCCKAB TGAMCTTTGMMCYT TGACCTTTGVMCBHB Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGACCTTTGBCCKAB TGAMCTTTGMMCYT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif BHVGRVCAAAGGTCA AAAGGTCAAAGGTCAAC VAAGGTCAAAGGTCAAC Direction: Forward Position #: 1 Overlap #: 15 Alignment: BHVGRVCAAAGGTCA-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement GTTGACCTTTGACCTTB AGTGSWSCACTGTGAMAMCACAGTG AGTGBTGMMCTKTGACMHYACAGTG Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---GTTGACCTTTGACCTTB----- AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Reverse Complement AGTGBTGMMCTKTGACMHYACAGTG VCTSTGKSCMKBCTRCYCTK ASTSTDGMMCTKYKRCMHYDCAGTG Direction: Forward Position #: 1 Overlap #: 20 Alignment: AGTGBTGMMCTKTGACMHYACAGTG VCTSTGKSCMKBCTRCYCTK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif CACTGDMDRGKYMRAGRRCHASAST TGGAGCACTGTGACAVCACAGTGG TGGAGCACTGTGAVRBCAVAGDGSHASAST Direction: Forward Position #: 6 Overlap #: 19 Alignment: -----CACTGDMDRGKYMRAGRRCHASAST TGGAGCACTGTGACAVCACAGTGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Original Motif ASTSTDSCDCTVTGBKVTCACAGTGCTCCA VHRGGTCABDBTGMCCTB ASTVDRGSWCWVBGTKVYCWCAGTGCTCCA Direction: Forward Position #: 4 Overlap #: 18 Alignment: ASTSTDSCDCTVTGBKVTCACAGTGCTCCA ---VHRGGTCABDBTGMCCTB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Original Motif ASTVDRGSWCWVBGTKVYCWCAGTGCTCCA TGTGGTGTCACAGTGCTCC TRBKSTGKCACAGTGYTVCCWCAGTGCTCCA Direction: Forward Position #: 2 Overlap #: 18 Alignment: -ASTVDRGSWCWVBGTKVYCWCAGTGCTCCA TGTGGTGTCACAGTGCTCC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement TRBKSTGKCACAGTGYTVCCWCAGTGCTCCA MGGTCAGGGTGACCTRDBHV TRBKSTVKSWCAGKGTKVCCTVAGTGCTCCA Direction: Forward Position #: 7 Overlap #: 20 Alignment: TRBKSTGKCACAGTGYTVCCWCAGTGCTCCA ------MGGTCAGGGTGACCTRDBHV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif TGGAGCACTVAGGBYACRCTGWSYBASRVMA TTCAGCACCATGGACAGCKCC TKSAGCACYVHGGHCASVBHSWSYBASRVMA Direction: Forward Position #: 1 Overlap #: 21 Alignment: TGGAGCACTVAGGBYACRCTGWSYBASRVMA TTCAGCACCATGGACAGCKCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 52 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 NR1H2RXRA Original Motif Reverse Complement TGAMCTTTGMMCYT GTTGACCTTTGACCTTT TTGACCTTTGACCTTGT Direction: Backward Position #: 2 Overlap #: 14 Alignment: --TGAMCTTTGMMCYT- GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif ACAAGGTCAAAGGTCAA BTRGGDCARAGGKCA ASDRGGKCAAAGGTCAA Direction: Forward Position #: 2 Overlap #: 15 Alignment: ACAAGGTCAAAGGTCAA -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement ASDRGGKCAAAGGTCAA AGTGSWSCACTGTGAMAMCACAGTG ASTGGRBCAMWGKKMMAMCACAGTG Direction: Forward Position #: 1 Overlap #: 17 Alignment: ASDRGGKCAAAGGTCAA-------- AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif ASTGGRBCAMWGKKMMAMCACAGTG RAGKGMAGVRRGSRCASAGV ASTGGAGBRMWGDDVVVVCACAGTG Direction: Forward Position #: 5 Overlap #: 20 Alignment: ASTGGRBCAMWGKKMMAMCACAGTG ----RAGKGMAGVRRGSRCASAGV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement CACTGTGBBBBHDCWRKBCTCCAST BAGGYCABHBTGACCKHV CACTSWGKBBDHVCTGDCCKHVAST Direction: Forward Position #: 5 Overlap #: 18 Alignment: CACTGTGBBBBHDCWRKBCTCCAST ----BAGGYCABHBTGACCKHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Reverse Complement CACTSWGKBBDHVCTGDCCKHVAST GGYGCTGTCCATGGTGCTGAA CACTSWGKBBVHVCTGTCCDHGRTKCTGAA Direction: Forward Position #: 10 Overlap #: 16 Alignment: CACTSWGKBBDHVCTGDCCKHVAST----- ---------GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif CACTSWGKBBVHVCTGTCCDHGRTKCTGAA TGGAGCACTGTGACAVCACAGTGG TGGAGCACTGTGRYAVCACWGTSSDHGRTKCTGAA Direction: Forward Position #: 6 Overlap #: 19 Alignment: -----CACTSWGKBBVHVCTGTCCDHGRTKCTGAA TGGAGCACTGTGACAVCACAGTGG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Original Motif TGGAGCACTGTGRYAVCACWGTSSDHGRTKCTGAA TGTGGTGTCACAGTGCTCC TGTKGKRKCACWGTGVYVCCACWGTSSDHGRTKCTGAA Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---TGGAGCACTGTGRYAVCACWGTSSDHGRTKCTGAA TGTGGTGTCACAGTGCTCC------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Original Motif TTCAGRAMCHDSSACWGTGGVMVCACWGTGRKRCRACA RGGBCAAAGKYCA TTCAGRAMVDDBCAMAGKBSVMVCACWGTGRKRCRACA Direction: Forward Position #: 9 Overlap #: 13 Alignment: TTCAGRAMCHDSSACWGTGGVMVCACWGTGRKRCRACA --------RGGBCAAAGKYCA----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement TTCAGRAMVDDBCAMAGKBSVMVCACWGTGRKRCRACA MGGTCAGGGTGACCTRDBHV TTCAGRAMMGGBCAVDGTGVCMDVRCHGTGRKRCRACA Direction: Forward Position #: 9 Overlap #: 20 Alignment: TTCAGRAMVDDBCAMAGKBSVMVCACWGTGRKRCRACA --------MGGTCAGGGTGACCTRDBHV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 53 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement VDBHMAGGTCACCCTGACCY CCACTGTGVTGTCACAGTGCTCCA ACTGTVRKGTCACMSTGMYCYCCA Direction: Backward Position #: 2 Overlap #: 20 Alignment: ---VDBHMAGGTCACCCTGACCY- CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Reverse Complement ACTGTVRKGTCACMSTGMYCYCCA AGTGSWSCACTGTGAMAMCACAGTG ACTRBKGKRKCACWGTGMCMHCMMAGTG Direction: Forward Position #: 4 Overlap #: 21 Alignment: ACTGTVRKGTCACMSTGMYCYCCA---- ---AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement ACTRBKGKRKCACWGTGMCMHCMMAGTG VCTSTGKSCMKBCTRCYCTK ACTVTBGBVHCACTGYBMYHHCMMAGTG Direction: Forward Position #: 1 Overlap #: 20 Alignment: ACTRBKGKRKCACWGTGMCMHCMMAGTG VCTSTGKSCMKBCTRCYCTK-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement ACTVTBGBVHCACTGYBMYHHCMMAGTG GGAGCACTGTGACACCACA ACTVTBGGABCACTGTGACACCAMAGTG Direction: Forward Position #: 7 Overlap #: 19 Alignment: ACTVTBGBVHCACTGYBMYHHCMMAGTG ------GGAGCACTGTGACACCACA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Reverse Complement CACTRTGGTGTCACAGTGBTCCBAVAGT BMSMGCCYMCTKSTGGMHM CACTRTVGHGYCHCMKKGTKSCBAVAGT Direction: Forward Position #: 6 Overlap #: 19 Alignment: CACTRTGGTGTCACAGTGBTCCBAVAGT -----BMSMGCCYMCTKSTGGMHM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Reverse Complement ACTVTBGSYACRRRGHGKCDCVAMAGTG BAGGYCABHBTGACCKHV BAGRYHABBVYSACVDDGHGKCDCVAMAGTG Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---ACTVTBGSYACRRRGHGKCDCVAMAGTG BAGGYCABHBTGACCKHV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif CACTRTVGHGYCHCDHVGTSMVBVTDKMCTB CHHCHBTCCTSCYTCTGC CACTRYVBHVYYHCTBCBTCWBBVTDKMCTB Direction: Forward Position #: 6 Overlap #: 18 Alignment: CACTRTVGHGYCHCDHVGTSMVBVTDKMCTB -----CHHCHBTCCTSCYTCTGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Reverse Complement Reverse Complement BAGRYHABBBWGABGBAGDKKVDBVMMAGTG TGTGTGWGTGTGTGTGTG TGKRKGKKHGTGHSWGTGBAGRYHABBBWGA Direction: Backward Position #: 1 Overlap #: 18 Alignment: BAGRYHABBBWGABGBAGDKKVDBVMMAGTG -------------TGTGTGWGTGTGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 54 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb NR2F1 Reverse Complement Original Motif TGACCTTGMBBB TGAMCTTTGMMCYT WSMYYTKRMCHBTG Direction: Backward Position #: 1 Overlap #: 12 Alignment: --TGACCTTGMBBB TGAMCTTTGMMCYT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif CAVDGYMYAKKRSW BTRGGDCARAGGKCA CVHRGBVCADRGGTCA Direction: Forward Position #: 2 Overlap #: 13 Alignment: CAVDGYMYAKKRSW-- -BTRGGDCARAGGKCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Reverse Complement Reverse Complement TGACCKHTGVBCMHBG TGMYCTTTGBCCK TGVCCTTTGBHCBHBG Direction: Forward Position #: 1 Overlap #: 13 Alignment: TGACCKHTGVBCMHBG TGMYCTTTGBCCK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Reverse Complement TGVCCTTTGBHCBHBG GTTGACCTTTGACCTTT GTTGACCTTTGACCTDTG Direction: Forward Position #: 3 Overlap #: 15 Alignment: --TGVCCTTTGBHCBHBG GTTGACCTTTGACCTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement GTTGACCTTTGACCTDTG MGGTCAGGGTGACCTRDBHV VKKKMMSKBTGACCTDBGHV Direction: Forward Position #: 1 Overlap #: 18 Alignment: GTTGACCTTTGACCTDTG-- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Reverse Complement VKKKMMSKBTGACCTDBGHV BAGGYCABHBTGACCKHV VDGGHMMBBTKRMCYKDGHV Direction: Forward Position #: 1 Overlap #: 18 Alignment: VKKKMMSKBTGACCTDBGHV BAGGYCABHBTGACCKHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif VDGGHMMBBTKRMCYKDGHV TTCAGCACCATGGACAGCKCC TBHRGHACCHTGGACAGHDVC Direction: Forward Position #: 2 Overlap #: 20 Alignment: -VDGGHMMBBTKRMCYKDGHV TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement TBHRGHACCHTGGACAGHDVC GGAGCACTGTGACACCACA TBHRGHACSDWGSACWGTGACACCACA Direction: Forward Position #: 9 Overlap #: 13 Alignment: TBHRGHACCHTGGACAGHDVC------ --------GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement TGTGGTGTCACWGTSCWHSGTDCKDVA CCACTGTGVTGTCACAGTGCTCCA CCACTGTGGTGTCACAGTGCTCCRTDCKDVA Direction: Forward Position #: 5 Overlap #: 20 Alignment: ----TGTGGTGTCACWGTSCWHSGTDCKDVA CCACTGTGVTGTCACAGTGCTCCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Reverse Complement TBHRGHAKGGAGCACTGTGACACCACAGTGG AGTGSWSCACTGTGAMAMCACAGTG TBHRGMVTGSAGCACTGTGACAVCACAGTGG Direction: Forward Position #: 6 Overlap #: 25 Alignment: TBHRGHAKGGAGCACTGTGACACCACAGTGG -----AGTGSWSCACTGTGAMAMCACAGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 55 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ZEB1 Motif 1 Original Motif Original Motif CACCTD YGCCACCTDSTGGY YGCCACCTDSTGGY Direction: Forward Position #: 4 Overlap #: 6 Alignment: ---CACCTD----- YGCCACCTDSTGGY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Reverse Complement YGCCACCTDSTGGY GAKAGKTGGCTCWG YGCCACCKAGWGGTGGCTCWG Direction: Forward Position #: 8 Overlap #: 7 Alignment: YGCCACCTDSTGGY------- -------GAKAGKTGGCTCWG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Reverse Complement Reverse Complement CWGAGCCACCWCTRGGTGGCK BMSMGCCYMCTKSTGGMHM CWGMGCCMCCTBBWGGYGGCK Direction: Forward Position #: 1 Overlap #: 19 Alignment: CWGAGCCACCWCTRGGTGGCK BMSMGCCYMCTKSTGGMHM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RORA_1 Combined Motif Reverse Complement Reverse Complement YGCCMCCWBBAGGYGGCYCWG TGACCTDVWT YGYGACCTBBAKGYGGCYCWG Direction: Forward Position #: 3 Overlap #: 10 Alignment: YGCCMCCWBBAGGYGGCYCWG --TGACCTDVWT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif CWGMGCCMCYTBVAGGTCMCK TTCAGCACCATGGACAGCKCC TTCAGMRCCHYSKACAGSTCMCK Direction: Forward Position #: 3 Overlap #: 19 Alignment: --CWGMGCCMCYTBVAGGTCMCK TTCAGCACCATGGACAGCKCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Original Motif Original Motif TTCAGMRCCHYSKACAGSTCMCK VBBYCAAGGTCA VBBTCARGGYCAYSKACAGSTCMCK Direction: Forward Position #: 3 Overlap #: 10 Alignment: --TTCAGMRCCHYSKACAGSTCMCK VBBYCAAGGTCA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Original Motif VBBTCARGGYCAYSKACAGSTCMCK AAAGGTCAAAGGTCAAC AAAGGTCMAAGGTCAHSKACAGSTCMCK Direction: Forward Position #: 4 Overlap #: 14 Alignment: ---VBBTCARGGYCAYSKACAGSTCMCK AAAGGTCAAAGGTCAAC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 56 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Myc Reverse Complement Reverse Complement GCCACGTGSD DCCACGTGCV GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSD DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Reverse Complement Reverse Complement VSCACGTGGC SBCGCGGGGSB VSCRCGKGGVB Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCACGTGGC- SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Reverse Complement Original Motif BVCCYCGMGSV YDRCCASYAGRKGGCRSYV YBVCCHCGAGVKGGCRSYV Direction: Forward Position #: 2 Overlap #: 11 Alignment: -BVCCYCGMGSV------- YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCCCCGCSssk Original Motif Reverse Complement YBVCCHCGAGVKGGCRSYV BBSGGCGGGGBS YBSSSCSGRGVBGGCRSYV Direction: Forward Position #: 1 Overlap #: 12 Alignment: YBVCCHCGAGVKGGCRSYV BBSGGCGGGGBS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Original Motif Reverse Complement YBSSSCSGRGVBGGCRSYV KCCASDAGGTGGCK KCCVSBMGGBGGCGGCRSYV Direction: Forward Position #: 2 Overlap #: 13 Alignment: -YBSSSCSGRGVBGGCRSYV KCCASDAGGTGGCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Original Motif KCCVSBMGGBGGCGGCRSYV CACTGTGRTRTCACAGTGSWSCACT KCCVCACKGTGGYGKCACAGTGSWSCACT Direction: Forward Position #: 5 Overlap #: 16 Alignment: KCCVSBMGGBGGCGGCRSYV--------- ----CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif KCCVCACKGTGGYGKCACAGTGSWSCACT VDBHMAGGTCACCCTGACCY KCCVCAVBGHGRBGKCACHVTGVYCCACT Direction: Forward Position #: 7 Overlap #: 20 Alignment: KCCVCACKGTGGYGKCACAGTGSWSCACT ------VDBHMAGGTCACCCTGACCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Reverse Complement Reverse Complement AGTGGKVCAVDGTGRCBKCHCBVTGBGGY ABCACAGTGGAGCACTG AGTGGRVCACAGTGRMGBMMYBVTGBGGY Direction: Forward Position #: 6 Overlap #: 17 Alignment: AGTGGKVCAVDGTGRCBKCHCBVTGBGGY -----ABCACAGTGGAGCACTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Reverse Complement KCCVCAVBMRYBCYMCACTGTGVKCCACT TGMYCTTTGBCCK KCCVBRVYCKTTSYCCDCTGTGVKCCACT Direction: Forward Position #: 5 Overlap #: 13 Alignment: KCCVCAVBMRYBCYMCACTGTGVKCCACT ----TGMYCTTTGBCCK------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif AGTGGRVCACAGDGGMSAARGKVMBBGGY AGTGCTCCACTGTGGTGTCACAGT AGTGSTCCACWGTGGTGWMASDVHBBGGY Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTGGRVCACAGDGGMSAARGKVMBBGGY AGTGCTCCACTGTGGTGTCACAGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 57 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST TFM12 Reverse Complement Reverse Complement GGYGCTGTCCATGGTGCTGAA VCTSTGKSCMKBCTRCYCTK VCKCTGTCCMTGSTGCTVWDG Direction: Backward Position #: 1 Overlap #: 20 Alignment: GGYGCTGTCCATGGTGCTGAA -VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AgTGCTCCACTGTGgTGTCACAgT Combined Motif Original Motif Original Motif VCKCTGTCCMTGSTGCTVWDG AGTGCTCCACTGTGGTGTCACAGT TGCTVWDGVVTSYKYCMCTGKAGTGCTCCACT Direction: Backward Position #: 9 Overlap #: 13 Alignment: -----------VCKCTGTCCMTGSTGCTVWDG --------AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Reverse Complement AGTGGAGCACTRCAGYGKRKSAVBCHWVAGCA MGGTCAGGGTGACCTRDBHV AGTGGAGMRSTCMRGBKGABCWVDCHHVAGCA Direction: Forward Position #: 8 Overlap #: 20 Alignment: AGTGGAGCACTRCAGYGKRKSAVBCHWVAGCA -------MGGTCAGGGTGACCTRDBHV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Reverse Complement TGCTVHDGHVWGBTCYVCKYGASKRCTCCACT GCAGAKGSAGGABDGHDG TGCTVHDGCHDVKKCHGSDBRVVKGCTCCACT Direction: Forward Position #: 8 Overlap #: 18 Alignment: TGCTVHDGHVWGBTCYVCKYGASKRCTCCACT -------GCAGAKGSAGGABDGHDG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif TGCTVHDGCHDVKKCHGSDBRVVKGCTCCACT CAGTGCTCCACTGTGBT GTGBTHVSTKCTCCACTTGCTVHDGCHDVKKCHGSDB Direction: Backward Position #: 6 Overlap #: 12 Alignment: TGCTVHDGCHDVKKCHGSDBRVVKGCTCCACT----- --------------------CAGTGCTCCACTGTGBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Reverse Complement GTGBTHVSTKCTCCACTTGCTVHDGCHDVKKCHGSDB ACTGTGGTGTCACART ACTGTGGTVTCASMDYCACTTGCTVHDGCHDVKKCHGSDB Direction: Forward Position #: 4 Overlap #: 13 Alignment: ---GTGBTHVSTKCTCCACTTGCTVHDGCHDVKKCHGSDB ACTGTGGTGTCACART------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement ACTGTGGTVTCASMDYCACTTGCTVHDGCHDVKKCHGSDB CCACTGTGVTGTCACAGTGCTCCA CCACTGTGGTGTCACAGTSVYYYRCTVHDGCHDVKKCHGSDB Direction: Forward Position #: 3 Overlap #: 22 Alignment: --ACTGTGGTVTCASMDYCACTTGCTVHDGCHDVKKCHGSDB CCACTGTGVTGTCACAGTGCTCCA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif CCACTGTGGTGTCACAGTSVYYYRCTVHDGCHDVKKCHGSDB VHRGGTCABDBTGMCCTB CCACTGTRRKGTCACVDTGMYCYVCTVHDGCHDVKKCHGSDB Direction: Forward Position #: 7 Overlap #: 18 Alignment: CCACTGTGGTGTCACAGTSVYYYRCTVHDGCHDVKKCHGSDB ------VHRGGTCABDBTGMCCTB------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Original Motif CCACTGTRRKGTCACVDTGMYCYVCTVHDGCHDVKKCHGSDB RGGBCAAAGKYCA CCACTGTRGKGYMAVGKTSAYCYVCTVHDGCHDVKKCHGSDB Direction: Forward Position #: 8 Overlap #: 13 Alignment: CCACTGTRRKGTCACVDTGMYCYVCTVHDGCHDVKKCHGSDB -------RGGBCAAAGKYCA---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif VDSCHGYYBHHGCHHVAGVMGKTSAYCBTRMCYCMACAGTGG BTRGGDCARAGGKCA VDSCHGYYBBTRBVDCARARGKYVAYCBTRMCYCMACAGTGG Direction: Forward Position #: 10 Overlap #: 15 Alignment: VDSCHGYYBHHGCHHVAGVMGKTSAYCBTRMCYCMACAGTGG ---------BTRGGDCARAGGKCA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 58 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Mycn Reverse Complement Reverse Complement DCCACGTGCV GCCACGTGSD GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCACGTGCV GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Reverse Complement Reverse Complement VSCACGTGGC SBCGCGGGGSB VSCRCGKGGVB Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCACGTGGC- SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCCCCGCSssk Reverse Complement Original Motif BVCCYCGMGSV SBCCCCGCCSBB SBCCCCGCSSBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BVCCYCGMGSV- SBCCCCGCCSBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement SBCCCCGCSSBB BMSMGCCYMCTKSTGGMHM SBYCSCGCCCVCTKSTGGMHM Direction: Forward Position #: 3 Overlap #: 10 Alignment: SBCCCCGCSSBB--------- --BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 Combined Motif Reverse Complement Original Motif YDRCCASYAGVGGGCGSGKBS YGCCACCTDSTGGY YBGCCACCWDSKGGCGSGKBS Direction: Forward Position #: 2 Overlap #: 14 Alignment: YDRCCASYAGVGGGCGSGKBS -YGCCACCTDSTGGY------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Reverse Complement SBYCSCGCCRSHWGGTGGCVM AGTGSWSCACTGTGAMAMCACAGTG SBYMSYGCHVCAHKGTGRCMMCACAGTG Direction: Forward Position #: 4 Overlap #: 18 Alignment: SBYCSCGCCRSHWGGTGGCVM------- ---AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Reverse Complement SBYMSYGCHVCAHKGTGRCMMCACAGTG TGMYCTTTGBCCK TGVYCKTKSBVCDHKGTGRCMMCACAGTG Direction: Forward Position #: 2 Overlap #: 12 Alignment: -SBYMSYGCHVCAHKGTGRCMMCACAGTG TGMYCTTTGBCCK---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Original Motif TGVYCKTKSBVCDHKGTGRCMMCACAGTG VDBHMAGGTCACCCTGACCY DBVYMDKGBCACHCTGWSVYMMCACAGTG Direction: Forward Position #: 1 Overlap #: 20 Alignment: TGVYCKTKSBVCDHKGTGRCMMCACAGTG VDBHMAGGTCACCCTGACCY--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Reverse Complement DBVYMDKGBCACHCTGWSVYMMCACAGTG ABCACAGTGGAGCACTG ABCACAGTGGMGCACTGWSVYMMCACAGTG Direction: Forward Position #: 2 Overlap #: 16 Alignment: -DBVYMDKGBCACHCTGWSVYMMCACAGTG ABCACAGTGGAGCACTG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif ABCACAGTGGMGCACTGWSVYMMCACAGTG VHRGGTCABDBTGMCCTB ABCACAVDGGRKCABDGTGVCMHCACAGTG Direction: Forward Position #: 7 Overlap #: 18 Alignment: ABCACAGTGGMGCACTGWSVYMMCACAGTG ------VHRGGTCABDBTGMCCTB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 59 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 TFM12 Original Motif Reverse Complement VHRGGTCABDBTGMCCTB VCTSTGKSCMKBCTRCYCTK VCHVDGGBCABBBTGMCCTB Direction: Forward Position #: 3 Overlap #: 18 Alignment: --VHRGGTCABDBTGMCCTB VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif BAGGRCABBVTGVCCDVHGV TGGAGCACTGTGACAVCACAGTGG TRGRGCASTGTGACMHCASAGTGG Direction: Forward Position #: 1 Overlap #: 20 Alignment: BAGGRCABBVTGVCCDVHGV---- TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement TRGRGCASTGTGACMHCASAGTGG AGTGSWSCACTGTGAMAMCACAGTG AGTGGWGCACTGTGACMHCACAGTGG Direction: Forward Position #: 3 Overlap #: 23 Alignment: --TRGRGCASTGTGACMHCASAGTGG AGTGSWSCACTGTGAMAMCACAGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif AGTGGWGCACTGTGACMHCACAGTGG TTCAGCACCATGGACAGCKCC ACAGCKCCWBCASYRYSAYRGAGTGGWGCACTGT Direction: Backward Position #: 9 Overlap #: 13 Alignment: AGTGGWGCACTGTGACMHCACAGTGG-------- -------------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement ACAGCKCCWBCASYRYSAYRGAGTGGWGCACTGT MGGTCAGGGTGACCTRDBHV MGGWCAGBDYSDCCWGBVYSAYRGAGTGGWGCACTGT Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---ACAGCKCCWBCASYRYSAYRGAGTGGWGCACTGT MGGTCAGGGTGACCTRDBHV----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement MGGWCAGBDYSDCCWGBVYSAYRGAGTGGWGCACTGT GGAGCACTGTGACACCACA GGAGSACWGTGACACCASDVYSAYRGAGTGGWGCACTGT Direction: Forward Position #: 3 Overlap #: 17 Alignment: --MGGWCAGBDYSDCCWGBVYSAYRGAGTGGWGCACTGT GGAGCACTGTGACACCACA-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement GGAGSACWGTGACACCASDVYSAYRGAGTGGWGCACTGT GCAGAKGSAGGABDGHDG GGAGSACWGBRVMDSCAGVVBVVHDGAGTGGWGCACTGT Direction: Forward Position #: 9 Overlap #: 18 Alignment: GGAGSACWGTGACACCASDVYSAYRGAGTGGWGCACTGT --------GCAGAKGSAGGABDGHDG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Reverse Complement ACAGTGCWCCACTCHDBVVBVCTGSDRVKBCWGTSCTCC TGRCCTKTGHCCKAB ACAGTKSDCCWBTSHVBBVBVCTGSDRVKBCWGTSCTCC Direction: Forward Position #: 6 Overlap #: 15 Alignment: ACAGTGCWCCACTCHDBVVBVCTGSDRVKBCWGTSCTCC -----TGRCCTKTGHCCKAB------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif GGAGSACWGBRVMDSCAGVVBBBVDSABWGGDSYACTGT CWGAGCCAYCTYTC GGAGSACWGHGCCABCWBBHBBBVDSABWGGDSYACTGT Direction: Forward Position #: 7 Overlap #: 14 Alignment: GGAGSACWGBRVMDSCAGVVBBBVDSABWGGDSYACTGT ------CWGAGCCAYCTYTC------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Original Motif GGAGSACWGHGCCABCWBBHBBBVDSABWGGDSYACTGT TGAMCTTTGMMCYT KGAVCWYTGVVCCDBCWBBHBBBVDSABWGGDSYACTGT Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGAGSACWGHGCCABCWBBHBBBVDSABWGGDSYACTGT TGAMCTTTGMMCYT------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 60 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA REST Reverse Complement Reverse Complement GTTGACCTTTGACCTTT GGYGCTGTCCATGGTGCTGAA GGYGYTGWCCTTKGWSCTKWA Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---GTTGACCTTTGACCTTT- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Reverse Complement GGYGYTGWCCTTKGWSCTKWA TGRCCTKTGHCCKAB TGRSCKYTGHCCTWBGWSCTKWA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --GGYGYTGWCCTTKGWSCTKWA TGRCCTKTGHCCKAB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Original Motif TWYAGSWCBWAGGHCAMRGSMCA AAAGRTMAAACTA AACTAARRGVWMATWYAGSWCBWAGGHC Direction: Backward Position #: 6 Overlap #: 8 Alignment: TWYAGSWCBWAGGHCAMRGSMCA----- ---------------AAAGRTMAAACTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 61 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR4A2 NR1H2RXRA Original Motif Original Motif AAGGTCAC AAAGGTCAAAGGTCAAC AAAGGTCAMAGGTCAAC Direction: Forward Position #: 2 Overlap #: 8 Alignment: -AAGGTCAC-------- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement GTTGACCTYTGACCTTT MGGTCAGGGTGACCTRDBHV MGGTCAGGKTGACCTBTGACCTTT Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------GTTGACCTYTGACCTTT MGGTCAGGGTGACCTRDBHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif MGGTCAGGKTGACCTBTGACCTTT VHRGGTCABDBTGMCCTB MGGTCADRKKKMMCTBTGACCTBT Direction: Forward Position #: 6 Overlap #: 18 Alignment: MGGTCAGGKTGACCTBTGACCTTT -----VHRGGTCABDBTGMCCTB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 21 Original Motif Reverse Complement MGGTCADRKKKMMCTBTGACCTBT GAGGTCAGAAG GAGGTCAGAAGKMMCTBTGACCTBT Direction: Forward Position #: 2 Overlap #: 10 Alignment: -MGGTCADRKKKMMCTBTGACCTBT GAGGTCAGAAG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Original Motif AVAGGTCABAGYRYCTTCTGACCTC AAAGRTMAAACTA AAAGRTMAAASTAYCTTCTGACCTC Direction: Forward Position #: 1 Overlap #: 13 Alignment: AVAGGTCABAGYRYCTTCTGACCTC AAAGRTMAAACTA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Original Motif AAAGRTMAAASTAYCTTCTGACCTC BTRGGDCARAGGKCA VDAGGBCAAAGKDCMTTCTGACCTC Direction: Forward Position #: 1 Overlap #: 15 Alignment: AAAGRTMAAASTAYCTTCTGACCTC BTRGGDCARAGGKCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 62 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RORA_1 Esrrb Original Motif Original Motif AWVDAGGTCA VBBYCAAGGTCA DTCAAGGTCAVB Direction: Backward Position #: 1 Overlap #: 10 Alignment: --AWVDAGGTCA VBBYCAAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Original Motif DTCAAGGTCAVB VDBHMAGGTCACCCTGACCY VDBCHAGGTCAVBCTGACCY Direction: Forward Position #: 2 Overlap #: 12 Alignment: -DTCAAGGTCAVB------- VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Reverse Complement Reverse Complement MGGTCAGBVTGACCTHGVDV GTTGACCTTTGACCTTT MGGTCAGGBTGACCTTTGACCTTT Direction: Forward Position #: 8 Overlap #: 13 Alignment: MGGTCAGBVTGACCTHGVDV---- -------GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Reverse Complement Reverse Complement AAAGGTCAAAGGTCAVCCTGACCY AKGYYCAAAGRTCA AARGBTCAAAGGTCAVCCTGACCY Direction: Forward Position #: 2 Overlap #: 14 Alignment: AAAGGTCAAAGGTCAVCCTGACCY -AKGYYCAAAGRTCA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Original Motif AARGBTCAAAGGTCAVCCTGACCY BTRGGDCARAGGKCA VDRGGBCAAAGGTCAVCCTGACCY Direction: Forward Position #: 1 Overlap #: 15 Alignment: AARGBTCAAAGGTCAVCCTGACCY BTRGGDCARAGGKCA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif VDRGGBCAAAGGTCAVCCTGACCY TTCAGCACCATGGACAGCKCC THCAGSACMAWGGWCAGCBYSACCY Direction: Forward Position #: 2 Overlap #: 20 Alignment: -VDRGGBCAAAGGTCAVCCTGACCY TTCAGCACCATGGACAGCKCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Original Motif MGGTSMBGCTGWCCWTRGTSCTGHA CTGCTGBDBBDGBD MGGTSVDGCTGHCCHTRGDSCTGHA Direction: Forward Position #: 6 Overlap #: 14 Alignment: MGGTSMBGCTGWCCWTRGTSCTGHA -----CTGCTGBDBBDGBD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Reverse Complement Original Motif THCAGSDCMAHGGHCAGCDVSACCY RGGBCAAAGKYCA RGKBCARVGBHHHGGHCAGCDVSACCY Direction: Forward Position #: 3 Overlap #: 11 Alignment: --THCAGSDCMAHGGHCAGCDVSACCY RGGBCAAAGKYCA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Reverse Complement MGGTSVDGCTGHCCHDDBCBMTGVRCK VCTSTGKSCMKBCTRCYCTK VCTSWGGBCMDBCTGHHCTDDBCBMTGVRCK Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----MGGTSVDGCTGHCCHDDBCBMTGVRCK VCTSTGKSCMKBCTRCYCTK----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 63 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Motif 22 Original Motif Original Motif BAACGTCCGC CAAAGTCCAGC CAAMGTCCRSC Direction: Forward Position #: 1 Overlap #: 10 Alignment: BAACGTCCGC- CAAAGTCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Original Motif CAAMGTCCRSC VHRGGTCABDBTGMCCTB CAAVGTCMVBCTGMCCTB Direction: Forward Position #: 1 Overlap #: 11 Alignment: CAAMGTCCRSC------- VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif CAAVGTCMVBCTGMCCTB VDBHMAGGTCACCCTGACCY CAAVGTCMRGSTSACCYTGACCY Direction: Forward Position #: 4 Overlap #: 15 Alignment: CAAVGTCMVBCTGMCCTB----- ---VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Reverse Complement MGGTCAKGGTSASCKRGACVTTG GTTGACCTTTGACCTTT GACCTTTKKKKAMCYTTMGGTCAKGGTSAS Direction: Backward Position #: 8 Overlap #: 10 Alignment: MGGTCAKGGTSASCKRGACVTTG------- -------------GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 64 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA NR1H2RXRA Original Motif Original Motif BTRGGDCARAGGKCA AAAGGTCAAAGGTCAAC ACVDRGGTCAAAGGTCA Direction: Backward Position #: 3 Overlap #: 15 Alignment: BTRGGDCARAGGKCA-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Reverse Complement TGACCTTTGACCKDBGT BAGGYCABHBTGACCKHV BAGKBMMCTBTGACCKDBGT Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---TGACCTTTGACCKDBGT BAGGYCABHBTGACCKHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif BAGKBMMCTBTGACCKDBGT RAGKGMAGVRRGSRCASAGV VAGKGMMSHDKGRCCWVDGH Direction: Forward Position #: 1 Overlap #: 20 Alignment: BAGKBMMCTBTGACCKDBGT RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement VAGKGMMSHDKGRCCWVDGH MGGTCAGGGTGACCTRDBHV VRGTSAVGBTKRCCYDDVBH Direction: Forward Position #: 1 Overlap #: 20 Alignment: VAGKGMMSHDKGRCCWVDGH MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Reverse Complement HBBHHKGGMYABCBTSACKB AGTGSWSCACTGTGAMAMCACAGTG HBABTGGDVCACTGTGACDHCACAGTG Direction: Forward Position #: 3 Overlap #: 18 Alignment: HBBHHKGGMYABCBTSACKB------- --AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement HBABTGGDVCACTGTGACDHCACAGTG BMSMGCCYMCTKSTGGMHM HBHSHGSCBCMYBGTGRCHHCACAGTG Direction: Forward Position #: 2 Overlap #: 19 Alignment: HBABTGGDVCACTGTGACDHCACAGTG -BMSMGCCYMCTKSTGGMHM------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Reverse Complement CACTGTGHDGMCACVMRGBGSCDSHBH GCAGAKGSAGGABDGHDG CACTGYRBVGSCASVADGGDBBDSHBH Direction: Forward Position #: 5 Overlap #: 18 Alignment: CACTGTGHDGMCACVMRGBGSCDSHBH ----GCAGAKGSAGGABDGHDG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement HBHSHBBDCCHTVSTGSCBBMMCAGTG GGYGCTGTCCATGGTGCTGAA DBHGCTSTCCHTGGTGCYKVHMCAGTG Direction: Forward Position #: 1 Overlap #: 21 Alignment: HBHSHBBDCCHTVSTGSCBBMMCAGTG GGYGCTGTCCATGGTGCTGAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif CACTGYHBYMGCACCAHGGASAGCHBH TGGAGCACTGTGACAVCACAGTGG TGGAGCACTGTGACASCACMRTGGASAGCHBH Direction: Forward Position #: 6 Overlap #: 19 Alignment: -----CACTGYHBYMGCACCAHGGASAGCHBH TGGAGCACTGTGACAVCACAGTGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Original Motif TGGAGCACTGTGACASCACMRTGGASAGCHBH TGTGGTGTCACAGTGCTCC TGTKGKRKCACWGTGMYMCCACMRTGGASAGCHBH Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---TGGAGCACTGTGACASCACMRTGGASAGCHBH TGTGGTGTCACAGTGCTCC---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 65 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 ESR1 Original Motif Reverse Complement CCAGYYHVADCCRG MGGTCAGGGTGACCTRDBHV MGGYCAGBBTGAVCYRGBHV Direction: Forward Position #: 4 Overlap #: 14 Alignment: ---CCAGYYHVADCCRG--- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Original Motif Original Motif MGGYCAGBBTGAVCYRGBHV YDRCCASYAGRKGGCRSYV HGGCCASBAKGDGSCRSBVV Direction: Forward Position #: 1 Overlap #: 19 Alignment: MGGYCAGBBTGAVCYRGBHV YDRCCASYAGRKGGCRSYV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif HGGCCASBAKGDGSCRSBVV RAGKGMAGVRRGSRCASAGV HGGCCAGDDVRGVVVRSVVHSAGV Direction: Forward Position #: 5 Overlap #: 16 Alignment: HGGCCASBAKGDGSCRSBVV---- ----RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif VCTSHVVSMVVVCKVHDCTGGCCD CHHCHBTCCTSCYTCTGC BCTCHBHSCDSCCTSHVCTGGCCD Direction: Forward Position #: 1 Overlap #: 18 Alignment: VCTSHVVSMVVVCKVHDCTGGCCD CHHCHBTCCTSCYTCTGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif BCTCHBHSCDSCCTSHVCTGGCCD CTGCTGBDBBDGBD BCTCHBWGCTGCHBBHGHDGGCCD Direction: Forward Position #: 6 Overlap #: 14 Alignment: BCTCHBHSCDSCCTSHVCTGGCCD -----CTGCTGBDBBDGBD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Reverse Complement HGGCCDDCHBVDGCAGCWBHGAGB BAGGYCABHBTGACCKHV BMGGYCABHVTGASCDDSWBHGAGB Direction: Forward Position #: 2 Overlap #: 17 Alignment: -HGGCCDDCHBVDGCAGCWBHGAGB BAGGYCABHBTGACCKHV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif BCTCHBWSHDGSTCABDBTGKCCYB BTRGGDCARAGGKCA BCTCHBTVBGGSAMAGGBYRKCCYB Direction: Forward Position #: 6 Overlap #: 15 Alignment: BCTCHBWSHDGSTCABDBTGKCCYB -----BTRGGDCARAGGKCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif BCTCHBTVBGGSAMAGGBYRKCCYB HCAGRRVACASAG BCTHHHDRRDRCASAGGBYRKCCYB Direction: Forward Position #: 4 Overlap #: 13 Alignment: BCTCHBTVBGGSAMAGGBYRKCCYB ---HCAGRRVACASAG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Reverse Complement Original Motif BMGGYKMVCCTSTGMHMMHHDDAGB CWGAGCCAYCTYTC CWGRGCCACCTBTBMHMMHHDDAGB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BMGGYKMVCCTSTGMHMMHHDDAGB CWGAGCCAYCTYTC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Reverse Complement Reverse Complement BCTHHHDRRDRBABAGGTGGCMCWG ABCACAGTGGAGCACTG ABCWCAGTGGAGCABWGGTGGCMCWG Direction: Forward Position #: 2 Overlap #: 16 Alignment: -BCTHHHDRRDRBABAGGTGGCMCWG ABCACAGTGGAGCACTG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 66 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF TFM12 Reverse Complement Reverse Complement BMSMGCCYMCTKSTGGMHM VCTSTGKSCMKBCTRCYCTK BCBMKSCCCCTBSTGSHCHK Direction: Forward Position #: 1 Overlap #: 19 Alignment: BMSMGCCYMCTKSTGGMHM- VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Reverse Complement RHGDSCASVAGGGGSYRVGV MGGTCAGGGTGACCTRDBHV VDGDCMDGVWGRSSBBGVVV Direction: Forward Position #: 1 Overlap #: 20 Alignment: RHGDSCASVAGGGGSYRVGV MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Reverse Complement BVVCBBSSKCWVCDYGDCHB ACTGTGACACCACAGTGGAGCACT ACTGTGACACCACAGTGGAGCACHBSSKCWVCDYGDCHB Direction: Forward Position #: 20 Overlap #: 5 Alignment: -------------------BVVCBBSSKCWVCDYGDCHB ACTGTGACACCACAGTGGAGCACT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif ACTGTGACACCACAGTGGAGCACHBSSKCWVCDYGDCHB CACTGTGRTRTCACAGTGSWSCACT CACTGTGAYAYCACAGTGSASCACTBSSKCWVCDYGDCHB Direction: Forward Position #: 2 Overlap #: 24 Alignment: -ACTGTGACACCACAGTGGAGCACHBSSKCWVCDYGDCHB CACTGTGRTRTCACAGTGSWSCACT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif VDGDCMDGVWGRSSBAGTGSTSCACTGTGMTKTCACAGTG CHHCHBTCCTSCYTCTGC VDGDCMVBVHGDCCTVSYBSTSCACTGTGMTKTCACAGTG Direction: Forward Position #: 6 Overlap #: 18 Alignment: VDGDCMDGVWGRSSBAGTGSTSCACTGTGMTKTCACAGTG -----CHHCHBTCCTSCYTCTGC----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Reverse Complement Reverse Complement CACTGTGAYAYCACAGTGSASBMSVAGGDCHVBBRGDCHB ABCACAGTGGAGCACTG ABCACWGTGRMRCMMYRGTGSASBMSVAGGDCHVBBRGDCHB Direction: Forward Position #: 3 Overlap #: 15 Alignment: --CACTGTGAYAYCACAGTGSASBMSVAGGDCHVBBRGDCHB ABCACAGTGGAGCACTG------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Original Motif Original Motif ABCACWGTGRMRCMMYRGTGSASBMSVAGGDCHVBBRGDCHB CAHCACAGTGGAGCACT CABCACWGTGGAGCAMYRGTGSASBMSVAGGDCHVBBRGDCHB Direction: Forward Position #: 2 Overlap #: 16 Alignment: -ABCACWGTGRMRCMMYRGTGSASBMSVAGGDCHVBBRGDCHB CAHCACAGTGGAGCACT-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement CABCACWGTGGAGCAMYRGTGSASBMSVAGGDCHVBBRGDCHB CCACTGTGVTGTCACAGTGCTCCA CCACYRYRGTGKMRCAVTRSTSCASBMSVAGGDCHVBBRGDCHB Direction: Forward Position #: 2 Overlap #: 23 Alignment: -CABCACWGTGGAGCAMYRGTGSASBMSVAGGDCHVBBRGDCHB CCACTGTGVTGTCACAGTGCTCCA-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Reverse Complement CCACYRYRGTGKMRCAVTRSTSCASBMSVAGGDCHVBBRGDCHB GAKAGKTGGCTCWG CCABHRAGGTGGCDCAGTRSTSCASBMSVAGGDCHVBBRGDCHB Direction: Forward Position #: 4 Overlap #: 14 Alignment: CCACYRYRGTGKMRCAVTRSTSCASBMSVAGGDCHVBBRGDCHB ---GAKAGKTGGCTCWG--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Original Motif Reverse Complement CCABHRAGGTGGCDCAGTRSTSCASBMSVAGGDCHVBBRGDCHB KCCASDAGGTGGCK BCMHVDAGGTGGCKCAGTRSTSCASBMSVAGGDCHVBBRGDCHB Direction: Forward Position #: 1 Overlap #: 14 Alignment: CCABHRAGGTGGCDCAGTRSTSCASBMSVAGGDCHVBBRGDCHB KCCASDAGGTGGCK------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 67 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement TGTGGTGTCACAGTGCTCC CCACTGTGVTGTCACAGTGCTCCA CCACTGTGGTGTCACAGTGCTCCA Direction: Forward Position #: 5 Overlap #: 19 Alignment: ----TGTGGTGTCACAGTGCTCC- CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Original Motif TGGAGCACTGTGACACCACAGTGG CACTGTGRTRTCACAGTGSWSCACT TGGAGCACTGTGAYRYCACAGTGSWSCACT Direction: Forward Position #: 6 Overlap #: 19 Alignment: TGGAGCACTGTGACACCACAGTGG------ -----CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif AGTGSWSCACTGTGMKKTCACAGTGCTCCA AGTGCTCCACTGTGGTGTCACAGT AGTGCTCCACTGTGVTGTCACAGTGCTCCA Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTGSWSCACTGTGMKKTCACAGTGCTCCA AGTGCTCCACTGTGGTGTCACAGT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif TGGAGCACTGTGACAVCACAGTGGAGCACT VDBHMAGGTCACCCTGACCY VDBHYRGRKCACYSTGACMBCACAGTGGAGCACT Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----TGGAGCACTGTGACAVCACAGTGGAGCACT VDBHMAGGTCACCCTGACCY-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement VDBHYRGRKCACYSTGACMBCACAGTGGAGCACT VCTSTGKSCMKBCTRCYCTK VSBVTGGVBCDBYDDSMCHBCACAGTGGAGCACT Direction: Forward Position #: 1 Overlap #: 20 Alignment: VDBHYRGRKCACYSTGACMBCACAGTGGAGCACT VCTSTGKSCMKBCTRCYCTK-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Original Motif AGTGCTCCACTGTGVHGYSDDKBDGBVCCAVVSV VHRGGTCABDBTGMCCTB AVTGSKYCACTGTGVHSTVDDKBDGBVCCAVVSV Direction: Forward Position #: 2 Overlap #: 18 Alignment: AGTGCTCCACTGTGVHGYSDDKBDGBVCCAVVSV -VHRGGTCABDBTGMCCTB--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif AVTGSKYCACTGTGVHSTVDDKBDGBVCCAVVSV CAGTGCTCCACTGTGBT CAGTGCTCCACTGTGVYSTVDDKBDGBVCCAVVSV Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AVTGSKYCACTGTGVHSTVDDKBDGBVCCAVVSV CAGTGCTCCACTGTGBT------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif CAGTGCTCCACTGTGVYSTVDDKBDGBVCCAVVSV AMTGTGACACCACAGT AMYRTKRCWCCACWGTGVYSTVDDKBDGBVCCAVVSV Direction: Forward Position #: 3 Overlap #: 14 Alignment: --CAGTGCTCCACTGTGVYSTVDDKBDGBVCCAVVSV AMTGTGACACCACAGT--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Reverse Complement AMYRTKRCWCCACWGTGVYSTVDDKBDGBVCCAVVSV TGTGTGDKTGTGTGTGTRTG GTBBKBGDKDKKGHSYRTRKAMYRTKRCWCCACWGTGV Direction: Backward Position #: 2 Overlap #: 19 Alignment: AMYRTKRCWCCACWGTGVYSTVDDKBDGBVCCAVVSV- ------------------TGTGTGDKTGTGTGTGTRTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 68 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sscCCCGCGcs ssCCCCGCSssk Original Motif Original Motif BSCCCCGCGBS SBCCCCGCCSBB SSCCCCGCSSSB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BSCCCCGCGBS- SBCCCCGCCSBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- gCGCGCsCgsG Combined Motif Original Motif Original Motif SSCCCCGCSSSB GCGCGCSCGCG SSSCSCGCSCSSG Direction: Forward Position #: 3 Overlap #: 10 Alignment: SSCCCCGCSSSB- --GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCkTGCssk Original Motif Original Motif SSSCSCGCSCSSG SSGCKTGCSSK SSGCGYGCSSKSG Direction: Forward Position #: 1 Overlap #: 11 Alignment: SSSCSCGCSCSSG SSGCKTGCSSK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement SSGCGYGCSSKSG BMSMGCCYMCTKSTGGMHM SSBCGYGCCCVCKKSTGGMHM Direction: Forward Position #: 3 Overlap #: 11 Alignment: SSGCGYGCSSKSG-------- --BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Original Motif SSBCGYGCCCVCKKSTGGMHM CHHCHBTCCTSCYTCTGC CHHSVBHSCKCCCHCTGSTGGMHM Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---SSBCGYGCCCVCKKSTGGMHM CHHCHBTCCTSCYTCTGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement CHHSVBHSCKCCCHCTGSTGGMHM VCTSTGKSCMKBCTRCYCTK CHHSVBCBCKSBCHCKBCTGSHCHK Direction: Forward Position #: 6 Overlap #: 19 Alignment: CHHSVBHSCKCCCHCTGSTGGMHM- -----VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif CHHSVBCBCKSBCHCKBCTGSHCHK VDBHMAGGTCACCCTGACCY CHHVVBCHVKGBCACBBYKRCCYHK Direction: Forward Position #: 4 Overlap #: 20 Alignment: CHHSVBCBCKSBCHCKBCTGSHCHK ---VDBHMAGGTCACCCTGACCY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cCGCGGrCACG Combined Motif Original Motif Original Motif CHHVVBCHVKGBCACBBYKRCCYHK CCGCGGRCACG CHHVVBCGCGGDCACBBYKRCCYHK Direction: Forward Position #: 6 Overlap #: 11 Alignment: CHHVVBCHVKGBCACBBYKRCCYHK -----CCGCGGRCACG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif RHKGGMYMBBGTGDCCGCGBVVHDG TTCAGCACCATGGACAGCKCC DTBRGCACCHBKGACMGCGSBVHDG Direction: Forward Position #: 1 Overlap #: 21 Alignment: RHKGGMYMBBGTGDCCGCGBVVHDG TTCAGCACCATGGACAGCKCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Reverse Complement CHHVBSCGCYGTCYBHGGTGCKBAH GCAGAGGSAKG BCWSVGBSMKGTCYBHGGTGCKBAH Direction: Forward Position #: 1 Overlap #: 11 Alignment: CHHVBSCGCYGTCYBHGGTGCKBAH GCAGAGGSAKG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 69 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- atactttggc wwCCAmAGTCmt Reverse Complement Original Motif GCCAAAGTAT DDCCAMAGTCHB DGCCAAAGTMTB Direction: Forward Position #: 2 Overlap #: 10 Alignment: -GCCAAAGTAT- DDCCAMAGTCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- taaacgatgcc Combined Motif Reverse Complement Reverse Complement VAYACTTTGGCD GGCATCGTTTA VAYACTTTGGCATCGTTTA Direction: Forward Position #: 9 Overlap #: 4 Alignment: VAYACTTTGGCD------- --------GGCATCGTTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Original Motif Reverse Complement VAYACTTTGGCATCGTTTA GTTGACCTTTGACCTTT VAYACTTTGGCATCGTTKACCTTTGACCTTT Direction: Forward Position #: 15 Overlap #: 5 Alignment: VAYACTTTGGCATCGTTTA------------ --------------GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement VAYACTTTGGCATCGTTKACCTTTGACCTTT GGAGCACTGTGACACCACA GGARCACTKTGRCAYCRYWKACCTTTGACCTTT Direction: Forward Position #: 3 Overlap #: 17 Alignment: --VAYACTTTGGCATCGTTKACCTTTGACCTTT GGAGCACTGTGACACCACA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement GGARCACTKTGRCAYCRYWKACCTTTGACCTTT AGTGSWSCACTGTGAMAMCACAGTG AGTGGAGCACTGTGACAHCACAGWSCTTTGACCTTT Direction: Forward Position #: 4 Overlap #: 22 Alignment: ---GGARCACTKTGRCAYCRYWKACCTTTGACCTTT AGTGSWSCACTGTGAMAMCACAGTG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Original Motif AAAGGTCAAAGSWCTGTGDTGTCACAGTGCTCCACT RGGBCAAAGKYCA AAAGGTCAAAGGHCWGTGDTGTCACAGTGCTCCACT Direction: Forward Position #: 3 Overlap #: 13 Alignment: AAAGGTCAAAGSWCTGTGDTGTCACAGTGCTCCACT --RGGBCAAAGKYCA--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Reverse Complement AAAGGTCAAAGGHCWGTGDTGTCACAGTGCTCCACT AKGYYCAAAGRTCA AARGBTCAAAGRTCAGTGDTGTCACAGTGCTCCACT Direction: Forward Position #: 2 Overlap #: 14 Alignment: AAAGGTCAAAGGHCWGTGDTGTCACAGTGCTCCACT -AKGYYCAAAGRTCA--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif AARGBTCAAAGRTCAGTGDTGTCACAGTGCTCCACT TGGAGCACTGTGACAVCACAGTGG TGGAGMAVKGTSAMAGVWCAGTGGTGTCACAGTGCTCCACT Direction: Forward Position #: 6 Overlap #: 19 Alignment: -----AARGBTCAAAGRTCAGTGDTGTCACAGTGCTCCACT TGGAGCACTGTGACAVCACAGTGG----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif AGTGGAGCACTGTGACACCACTGWVCTRTSACRVTRCTCCA AGTGCTCCACTGTGGTGTCACAGT AGTGSTSCACTGTGRYRTCACWGTVCTRTSACRVTRCTCCA Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTGGAGCACTGTGACACCACTGWVCTRTSACRVTRCTCCA AGTGCTCCACTGTGGTGTCACAGT----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 70 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT CTCF Original Motif Reverse Complement CAGTGCTCCACTGTGBT BMSMGCCYMCTKSTGGMHM SMGYSCYCYACTGKGBHBM Direction: Backward Position #: 1 Overlap #: 17 Alignment: --CAGTGCTCCACTGTGBT BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement SMGYSCYCYACTGKGBHBM GGYGCTGTCCATGGTGCTGAA GSMGCTSTCCABKGTGCTGAA Direction: Forward Position #: 2 Overlap #: 19 Alignment: -SMGYSCYCYACTGKGBHBM- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Original Motif GSMGCTSTCCABKGTGCTGAA TGTGGTGTCACAGTGCTCC GSMGCTSTCCABKGTGYKGWRTCACAGTGCTCC Direction: Forward Position #: 15 Overlap #: 7 Alignment: GSMGCTSTCCABKGTGCTGAA------------ --------------TGTGGTGTCACAGTGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif GGAGCACTGTGAMWCYMCACYBTGGASAGCRSC AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGRYDYCACASTBTGGASAGCRSC Direction: Forward Position #: 4 Overlap #: 21 Alignment: ---GGAGCACTGTGAMWCYMCACYBTGGASAGCRSC AGTGCTCCACTGTGGTGTCACAGT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement AGTGSWSCACTGTGRYDYCACASTBTGGASAGCRSC AGTGSWSCACTGTGAMAMCACAGTG AGTGSWSCACTGTGAHVHCACASTGTGGASAGCRSC Direction: Forward Position #: 1 Overlap #: 25 Alignment: AGTGSWSCACTGTGRYDYCACASTBTGGASAGCRSC AGTGSWSCACTGTGAMAMCACAGTG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif GSMGCTSTCCACASTGTGDBDTCACAGTGSWSCACT TGGAGCACTGTGACAVCACAGTGG TGGAGSACKSTGWCMVCACWGTGGBDTCACAGTGSWSCACT Direction: Forward Position #: 6 Overlap #: 19 Alignment: -----GSMGCTSTCCACASTGTGDBDTCACAGTGSWSCACT TGGAGCACTGTGACAVCACAGTGG----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Reverse Complement AGTGSWSCACTGTGAHVCCACWGTGBYGWCASRGTSCTCCA AGTGCTCCACTGTGDTG AGTGCTCCACTGTGVTRCCACWGTGBYGWCASRGTSCTCCA Direction: Forward Position #: 1 Overlap #: 17 Alignment: AGTGSWSCACTGTGAHVCCACWGTGBYGWCASRGTSCTCCA AGTGCTCCACTGTGDTG------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif AGTGCTCCACTGTGVTRCCACWGTGBYGWCASRGTSCTCCA AMTGTGACACCACAGT AMTRKKRCWCCACWGTGVTRCCACWGTGBYGWCASRGTSCTCCA Direction: Forward Position #: 4 Overlap #: 13 Alignment: ---AGTGCTCCACTGTGVTRCCACWGTGBYGWCASRGTSCTCCA AMTGTGACACCACAGT---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 Combined Motif Original Motif Original Motif AMTRKKRCWCCACWGTGVTRCCACWGTGBYGWCASRGTSCTCCA YGCCACCTDSTGGY AMTRKYGCMMCMYWGTGGYRCCACWGTGBYGWCASRGTSCTCCA Direction: Forward Position #: 6 Overlap #: 14 Alignment: AMTRKKRCWCCACWGTGVTRCCACWGTGBYGWCASRGTSCTCCA -----YGCCACCTDSTGGY------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif AMTRKYGCMMCMYWGTGGYRCCACWGTGBYGWCASRGTSCTCCA RAGKGMAGVRRGSRCASAGV AMTRKYGCMVBVCWGTGRBVVCACWGTGBYGWCASRGTSCTCCA Direction: Forward Position #: 8 Overlap #: 20 Alignment: AMTRKYGCMMCMYWGTGGYRCCACWGTGBYGWCASRGTSCTCCA -------RAGKGMAGVRRGSRCASAGV----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 71 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AmTGTGACACCACAGT AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif ACTGTGGTGTCACART AGTGCTCCACTGTGGTGTCACAGT ACTGTGGTGTCACAGTAGTGCTCC Direction: Backward Position #: 1 Overlap #: 16 Alignment: --------ACTGTGGTGTCACART AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif GGAGCACTACTGTGACACCACAGT TGGAGCACTGTGACAVCACAGTGG TGGAGCACTRTKRYRACACMRYRGT Direction: Forward Position #: 2 Overlap #: 23 Alignment: -GGAGCACTACTGTGACACCACAGT TGGAGCACTGTGACAVCACAGTGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement TGGAGCACTRTKRYRACACMRYRGT AGTGSWSCACTGTGAMAMCACAGTG AGTGGAGCACTGTGAYAMCACAGTRGT Direction: Forward Position #: 3 Overlap #: 23 Alignment: --TGGAGCACTRTKRYRACACMRYRGT AGTGSWSCACTGTGAMAMCACAGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Original Motif ACMACTGTGYTKTCACAGTGCTCCACT TGTGGTGTCACAGTGCTCC ACMACTGTGBTGTCACAGTGCTCCACT Direction: Forward Position #: 6 Overlap #: 19 Alignment: ACMACTGTGYTKTCACAGTGCTCCACT -----TGTGGTGTCACAGTGCTCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Reverse Complement ACMACTGTGBTGTCACAGTGCTCCACT ABCACAGTGGAGCACTG ACCACWGTGGWGYMMYRGTGCTCCACT Direction: Forward Position #: 1 Overlap #: 17 Alignment: ACMACTGTGBTGTCACAGTGCTCCACT ABCACAGTGGAGCACTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Reverse Complement AGTGGAGCACKKYYKCWCCACWGTGGT VCTSTGKSCMKBCTRCYCTK ASTGKRGCMCKDCTDCHCYDCWGTGGT Direction: Forward Position #: 1 Overlap #: 20 Alignment: AGTGGAGCACKKYYKCWCCACWGTGGT VCTSTGKSCMKBCTRCYCTK------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Original Motif Reverse Complement ASTGKRGCMCKDCTDCHCYDCWGTGGT AGTGCTCCACTGTGDTG ASTGCTSCACTGTKDYDCYDCWGTGGT Direction: Forward Position #: 1 Overlap #: 17 Alignment: ASTGKRGCMCKDCTDCHCYDCWGTGGT AGTGCTCCACTGTGDTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Reverse Complement ACCACWGDKGHMHYACAGTGSAGCAST MGGTCAGGGTGACCTRDBHV ABSWCAGDKKBACCHVRGYGSAGCAST Direction: Forward Position #: 1 Overlap #: 20 Alignment: ACCACWGDKGHMHYACAGTGSAGCAST MGGTCAGGGTGACCTRDBHV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif ASTGCTSCMCKVHGGTBRYHCTGWSBT TTCAGCACCATGGACAGCKCC THSWGCACCAHGGASRKCDCCCTGWSBT Direction: Forward Position #: 2 Overlap #: 20 Alignment: -ASTGCTSCMCKVHGGTBRYHCTGWSBT TTCAGCACCATGGACAGCKCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Original Motif ABSWCAGGGHGYKSTCCDTGGTGCWSHA CTGCTGBDBBDGBD ABSWCWGSTGBBKBTSHDTGGTGCWSHA Direction: Forward Position #: 5 Overlap #: 14 Alignment: ABSWCAGGGHGYKSTCCDTGGTGCWSHA ----CTGCTGBDBBDGBD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 72 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement CACTGTGRTRTCACAGTGSWSCACT ACTGTGACACCACAGTGGAGCACT ACTGTGAYAYCACAGTGSAGCACTC Direction: Backward Position #: 1 Overlap #: 24 Alignment: CACTGTGRTRTCACAGTGSWSCACT -ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Reverse Complement Original Motif GAGTGCTSCACTGTGMTKTCACAGT TGGAGCACTGTGACAVCACAGTGG GAGTGSWSCACTGTGAYRBCACAGTGG Direction: Forward Position #: 4 Overlap #: 22 Alignment: GAGTGCTSCACTGTGMTKTCACAGT-- ---TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Original Motif GAGTGSWSCACTGTGAYRBCACAGTGG RAGKGMAGVRRGSRCASAGV GAGTGSWGCAVKGTSABAGCACAGTGG Direction: Forward Position #: 1 Overlap #: 20 Alignment: GAGTGSWSCACTGTGAYRBCACAGTGG RAGKGMAGVRRGSRCASAGV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif GAGTGSWGCAVKGTSABAGCACAGTGG VDBHMAGGTCACCCTGACCY GADBBVAGSDCWSHSWGACCWCAGTGG Direction: Forward Position #: 2 Overlap #: 20 Alignment: GAGTGSWGCAVKGTSABAGCACAGTGG -VDBHMAGGTCACCCTGACCY------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement GADBBVAGSDCWSHSWGACCWCAGTGG BMSMGCCYMCTKSTGGMHM GABHSMRSCHCCTBSTGRCCACAGTGG Direction: Forward Position #: 3 Overlap #: 19 Alignment: GADBBVAGSDCWSHSWGACCWCAGTGG --BMSMGCCYMCTKSTGGMHM------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement GABHSMRSCHCCTBSTGRCCACAGTGG GGAGCACTGTGACACCACA GABHGVAGCACYKTGWSACCACAGTGG Direction: Forward Position #: 5 Overlap #: 19 Alignment: GABHSMRSCHCCTBSTGRCCACAGTGG ----GGAGCACTGTGACACCACA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Original Motif CCACTGTGGTSWCAYMGTGCTVCHBTC CAHCACAGTGGAGCACT CACCACWGTGGWGYMHYMGTGCTVCHBTC Direction: Forward Position #: 3 Overlap #: 15 Alignment: --CCACTGTGGTSWCAYMGTGCTVCHBTC CAHCACAGTGGAGCACT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Original Motif Reverse Complement CACCACWGTGGWGYMHYMGTGCTVCHBTC ABCACAGTGGAGCACTG CACCACWGTGGAGCAMTDGTGCTVCHBTC Direction: Forward Position #: 2 Overlap #: 17 Alignment: CACCACWGTGGWGYMHYMGTGCTVCHBTC -ABCACAGTGGAGCACTG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement CACCACWGTGGAGCAMTDGTGCTVCHBTC GCAGAKGSAGGABDGHDG CACCACDSWGVDGCAVBDGDGHKBCHBTC Direction: Forward Position #: 7 Overlap #: 18 Alignment: CACCACWGTGGAGCAMTDGTGCTVCHBTC ------GCAGAKGSAGGABDGHDG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif CACCACDSWGVDGCAVBDGDGHKBCHBTC VHRGGTCABDBTGMCCTB CACCACDVDGGTSMVBBDGHSCTBCHBTC Direction: Forward Position #: 7 Overlap #: 18 Alignment: CACCACDSWGVDGCAVBDGDGHKBCHBTC ------VHRGGTCABDBTGMCCTB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 73 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif CCACTGTGVTGTCACAGTGCTCCA CACTGTGRTRTCACAGTGSWSCACT CCMMYKKKGTKKYMMMRKKSYHCMACT Direction: Forward Position #: 3 Overlap #: 23 Alignment: CCACTGTGVTGTCACAGTGCTCCA----------------------------- --CACTGTGRTRTCACAGTGSWSCACT-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif CCMMYKKKGTKKYMMMRKKSYHCMACT AGTGCTCCACTGTGGTGTCACAGT AGTGCYCCACTGTGKTGTCACAKTSYHCMACT Direction: Forward Position #: 6 Overlap #: 19 Alignment: -----CCMMYKKKGTKKYMMMRKKSYHCMACT AGTGCTCCACTGTGGTGTCACAGT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement AGTGCYCCACTGTGKTGTCACAKTSYHCMACT BAGGYCABHBTGACCKHV AGTGCYCCABKBYRBBBTSACMKTSYHCMACT Direction: Forward Position #: 8 Overlap #: 18 Alignment: AGTGCYCCACTGTGKTGTCACAKTSYHCMACT -------BAGGYCABHBTGACCKHV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement AGTGCYCCABKBYRBBBTSACMKTSYHCMACT GCAGAKGSAGGABDGHDG AGTGCBCHVVKGBAGBDTVRMVKTSYHCMACT Direction: Forward Position #: 6 Overlap #: 18 Alignment: AGTGCYCCABKBYRBBBTSACMKTSYHCMACT -----GCAGAKGSAGGABDGHDG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif AGTRGDMSAYBRKVADBCTBCYBBHGVGCACT VDBHMAGGTCACCCTGACCY AGTRGDVBHHDGGBMABCBTSHCBYGVGCACT Direction: Forward Position #: 6 Overlap #: 20 Alignment: AGTRGDMSAYBRKVADBCTBCYBBHGVGCACT -----VDBHMAGGTCACCCTGACCY------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif AGTGCBCMBGDSAVGBTRVCCDDHBBHCMACT RAGKGMAGVRRGSRCASAGV AGTGCBCVDGDSVDGVDRVBVBDBVGHCMACT Direction: Forward Position #: 8 Overlap #: 20 Alignment: AGTGCBCMBGDSAVGBTRVCCDDHBBHCMACT -------RAGKGMAGVRRGSRCASAGV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Original Motif AGTRGDCBBDBVBVMDVCDBSHCDBGVGCACT TGTGGTGTCACAGTGCTCC AGTRKGSTGTCACAVTGCTYCHCDBGVGCACT Direction: Forward Position #: 3 Overlap #: 19 Alignment: AGTRGDCBBDBVBVMDVCDBSHCDBGVGCACT --TGTGGTGTCACAGTGCTCC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Reverse Complement AGTRKGSTGTCACAVTGCTYCHCDBGVGCACT ABCACAGTGGAGCACTG ABYACRGTGKMRCAVTGCTYCHCDBGVGCACT Direction: Forward Position #: 1 Overlap #: 17 Alignment: AGTRKGSTGTCACAVTGCTYCHCDBGVGCACT ABCACAGTGGAGCACTG--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Original Motif Reverse Complement ABYACRGTGKMRCAVTGCTYCHCDBGVGCACT AGTGCTCCACTGTGDTG ABYACAGTGBWSCACTGYKBYBCDBGVGCACT Direction: Forward Position #: 6 Overlap #: 17 Alignment: ABYACRGTGKMRCAVTGCTYCHCDBGVGCACT -----AGTGCTCCACTGTGDTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Original Motif AGTGCBCVDGBMBYMCAGTGSWBCACTGTKBT YDRCCASYAGRKGGCRSYV AGTGCBCHDGCCVCMMRGTGGMGCHVTGTKBT Direction: Forward Position #: 8 Overlap #: 19 Alignment: AGTGCBCVDGBMBYMCAGTGSWBCACTGTKBT -------YDRCCASYAGRKGGCRSYV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 74 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk TFM2 Original Motif Original Motif SBCCCCGCCSBB CHHCHBTCCTSCYTCTGC GCBBYCCYGCCBCTCHHC Direction: Backward Position #: 3 Overlap #: 12 Alignment: ----SBCCCCGCCSBB-- CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif GCBBYCCYGCCBCTCHHC VDBHMAGGTCACCCTGACCY GCBBBCCHRSSTCWCHHYGACCY Direction: Forward Position #: 4 Overlap #: 15 Alignment: GCBBYCCYGCCBCTCHHC----- ---VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Original Motif Reverse Complement GCBBBCCHRSSTCWCHHYGACCY BMSMGCCYMCTKSTGGMHM BMSVBCCYCCTDSKGSHBMHYGACCY Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---GCBBBCCHRSSTCWCHHYGACCY BMSMGCCYMCTKSTGGMHM------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Reverse Complement BMSVBCCYCCTDSKGSHBMHYGACCY TGRCCTKTGHCCKAB TKVCCKBYBCCYKVBGSHBMHYGACCY Direction: Forward Position #: 2 Overlap #: 14 Alignment: -BMSVBCCYCCTDSKGSHBMHYGACCY TGRCCTKTGHCCKAB------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif MGGTCMDRBHSCBVYKGGBMVRGGBYA RAGKGMAGVRRGSRCASAGV MGGTCVDRDBCHGVHGGGVMAVRGBYA Direction: Forward Position #: 6 Overlap #: 20 Alignment: MGGTCMDRBHSCBVYKGGBMVRGGBYA -----RAGKGMAGVRRGSRCASAGV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Reverse Complement MGGTCVDRDBCHGVHGGGVMAVRGBYA BAGGYCABHBTGACCKHV VRGKCMAVBBYGRCCKDVVMAVRGBYA Direction: Forward Position #: 1 Overlap #: 18 Alignment: MGGTCVDRDBCHGVHGGGVMAVRGBYA BAGGYCABHBTGACCKHV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif TKVCKVTRVVHYGGKCMBBVTRGYCKV TTCAGCACCATGGACAGCKCC TTCAKBACYVTGGMCAGVKCMBBVTRGYCKV Direction: Forward Position #: 5 Overlap #: 17 Alignment: ----TKVCKVTRVVHYGGKCMBBVTRGYCKV TTCAGCACCATGGACAGCKCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 Combined Motif Reverse Complement Reverse Complement VRGKCMAVBBRGRVCTGYCCABKGTBYTGAA KCCASDAGGTGGCK VRGKCCASDVGGDGSCKYCCABKGTBYTGAA Direction: Forward Position #: 4 Overlap #: 14 Alignment: VRGKCMAVBBRGRVCTGYCCABKGTBYTGAA ---KCCASDAGGTGGCK-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Original Motif Original Motif VRGKCCASDVGGDGSCKYCCABKGTBYTGAA BSCCCCGCGBS VVSBCCRCGVGGDGSCKYCCABKGTBYTGAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: VRGKCCASDVGGDGSCKYCCABKGTBYTGAA BSCCCCGCGBS-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- gCGCGCsCgsG Combined Motif Original Motif Original Motif VVSBCCRCGVGGDGSCKYCCABKGTBYTGAA GCGCGCSCGCG VCGCSCGCGVGGDGSCKYCCABKGTBYTGAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: VVSBCCRCGVGGDGSCKYCCABKGTBYTGAA GCGCGCSCGCG-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 75 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwCCAmAGTCmt CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif DDCCAMAGTCHB CACTGTGRTRTCACAGTGSWSCACT SCACTHDYCACAGTSBWCACTGTGR Direction: Backward Position #: 6 Overlap #: 12 Alignment: --------DDCCAMAGTCHB----- CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif SCACTHDYCACAGTSBWCACTGTGR CAGTGCTCCACTGTGBT CMRYKCTCCACWGTGBTCACTGTGR Direction: Forward Position #: 1 Overlap #: 17 Alignment: SCACTHDYCACAGTSBWCACTGTGR CAGTGCTCCACTGTGBT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Original Motif MCACAGTGABCACWGTGGAGRMKRG CAHCACAGTGGAGCACT CAVCACAGTGRASMMHKTGGAGRMKRG Direction: Forward Position #: 3 Overlap #: 15 Alignment: --MCACAGTGABCACWGTGGAGRMKRG CAHCACAGTGGAGCACT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif CAVCACAGTGRASMMHKTGGAGRMKRG AGTGCTCCACTGTGGTGTCACAGT AGTGCWCCACWGTGGWGWCABWGKAGRMKRG Direction: Forward Position #: 5 Overlap #: 20 Alignment: ----CAVCACAGTGRASMMHKTGGAGRMKRG AGTGCTCCACTGTGGTGTCACAGT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Reverse Complement Reverse Complement CMRYKCTRCWBTGWCWCCACWGTGGWGCACT TGMYCTTTGBCCK TSMHCTYTGCHCTGWCWCCACWGTGGWGCACT Direction: Forward Position #: 2 Overlap #: 12 Alignment: -CMRYKCTRCWBTGWCWCCACWGTGGWGCACT TGMYCTTTGBCCK------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Original Motif TSMHCTYTGCHCTGWCWCCACWGTGGWGCACT CAMACACACACAYDCACACA TSMHCTYTGCHCTGWCWCCACWGTGGHRCACWCACACAYDCACACA Direction: Forward Position #: 27 Overlap #: 6 Alignment: TSMHCTYTGCHCTGWCWCCACWGTGGWGCACT-------------- --------------------------CAMACACACACAYDCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement TGTGTGDKTGTGTGWGTGMDCCACWGTGGWGWCAGHGCAMAGHRSA CCACTGTGVTGTCACAGTGCTCCA CYRYKKKGKTGTSWSWGTGCTCCACWGTGGWGWCAGHGCAMAGHRSA Direction: Forward Position #: 2 Overlap #: 23 Alignment: -TGTGTGDKTGTGTGWGTGMDCCACWGTGGWGWCAGHGCAMAGHRSA CCACTGTGVTGTCACAGTGCTCCA----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Reverse Complement TSMHCTYTGCHCTGWCWCCACWGTGGAGCACWSWSACAYCRRRMKMG GGYGCTGTCCATGGTGCTGAA TSMHCTYTGBVHBSTSTCCAYDGTGSWGMACWSWSACAYCRRRMKMG Direction: Forward Position #: 10 Overlap #: 21 Alignment: TSMHCTYTGCHCTGWCWCCACWGTGGAGCACWSWSACAYCRRRMKMG ---------GGYGCTGTCCATGGTGCTGAA----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Reverse Complement CYRYKKKGKTGTSWSWGTRCWSCACHKTGGASASBDVBCAMAGHRSA GGAGCACTGTGACACCACA CYRBWGBRSTGTGACASYACASCACHKTGGASASBDVBCAMAGHRSA Direction: Forward Position #: 3 Overlap #: 19 Alignment: CYRYKKKGKTGTSWSWGTRCWSCACHKTGGASASBDVBCAMAGHRSA --GGAGCACTGTGACACCACA-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif TSMHCTYTGBVHBSTSTCCAYDGTGSTGTMSTGTCACASKBCWBMMG VDBHMAGGTCACCCTGACCY VDBMHHKKTSVVCBBKVYCCAYDGTGSTGTMSTGTCACASKBCWBMMG Direction: Forward Position #: 2 Overlap #: 19 Alignment: -TSMHCTYTGBVHBSTSTCCAYDGTGSTGTMSTGTCACASKBCWBMMG VDBHMAGGTCACCCTGACCY---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 76 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif AGTGCTCCACTGTGDTG AGTGCTCCACTGTGGTGTCACAGT AGTGCTCCACTGTGGTGTCACAGT Direction: Forward Position #: 1 Overlap #: 17 Alignment: AGTGCTCCACTGTGDTG------- AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGAMAMCACAGTG AGTGCTSCACTGTGVYRTCACAGTG Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTGCTCCACTGTGGTGTCACAGT- AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement AGTGCTSCACTGTGVYRTCACAGTG GGYGCTGTCCATGGTGCTGAA GGHGYKSTCCAYKGTGCTGHMACAGTG Direction: Forward Position #: 3 Overlap #: 19 Alignment: --AGTGCTSCACTGTGVYRTCACAGTG GGYGCTGTCCATGGTGCTGAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement GGHGYKSTCCAYKGTGCTGHMACAGTG GGAGCACTGTGACACCACA GGHGYGGWSCACTGTGMYRHCACAGTG Direction: Forward Position #: 6 Overlap #: 19 Alignment: GGHGYKSTCCAYKGTGCTGHMACAGTG -----GGAGCACTGTGACACCACA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement GGHGYGGWSCACTGTGMYRHCACAGTG BMSMGCCYMCTKSTGGMHM GGHGYDSMGCMCHSTGVTGVCAMAGTG Direction: Forward Position #: 5 Overlap #: 19 Alignment: GGHGYGGWSCACTGTGMYRHCACAGTG ----BMSMGCCYMCTKSTGGMHM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement CACTRTGVCAVCASHGRGCYSHMCHCC CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVYRDCACAGDGCTCCACHCC Direction: Forward Position #: 2 Overlap #: 23 Alignment: -CACTRTGVCAVCASHGRGCYSHMCHCC CCACTGTGVTGTCACAGTGCTCCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Original Motif Original Motif CCACTGTGVYRDCACAGDGCTCCACHCC CAGTGCTCCACTGTGBT CCACYRKKGCTBCACWGTGSTCCACHCC Direction: Forward Position #: 5 Overlap #: 17 Alignment: CCACTGTGVYRDCACAGDGCTCCACHCC ----CAGTGCTCCACTGTGBT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Reverse Complement Original Motif GGHGTGGASCACWGTGBAGCRRKMGTGG AMTGTGACACCACAGT AVKRKKRSACCACAGTGBAGCRRKMGTGG Direction: Forward Position #: 2 Overlap #: 15 Alignment: -GGHGTGGASCACWGTGBAGCRRKMGTGG AMTGTGACACCACAGT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwCCAmAGTCmt Reverse Complement Reverse Complement CCACYRKKGCTBCACTGTGGTSKYRMRVT VDGACTRTGGDD VVSACTRTGGHDBCACTGTGGTSKYRMRVT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -CCACYRKKGCTBCACTGTGGTSKYRMRVT VDGACTRTGGDD------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement AVKRKKRSACCACAGTGBDDCCAMAGTSVB VCTSTGKSCMKBCTRCYCTK VSTVTGDSMCCACWGYBVWBCCAMAGTSVB Direction: Forward Position #: 1 Overlap #: 20 Alignment: AVKRKKRSACCACAGTGBDDCCAMAGTSVB VCTSTGKSCMKBCTRCYCTK---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 77 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AgTGCTCCACTGTGgTGTCACAgT CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGAMAMCACAGTG ARKKGMKCMMYKKKRVWVYMMMRKK Direction: Forward Position #: 2 Overlap #: 24 Alignment: -AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Original Motif ARKKGMKCMMYKKKRVWVYMMMRKK TGGAGCACTGTGACAVCACAGTGG ARTGGAKCACTGTGACAVCACAGTGG Direction: Forward Position #: 3 Overlap #: 23 Alignment: ARKKGMKCMMYKKKRVWVYMMMRKK- --TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif ARTGGAKCACTGTGACAVCACAGTGG TTCAGCACCATGGACAGCKCC ACAGCKCCHKCASYRYSAHRGARTGGAKCACTGT Direction: Backward Position #: 9 Overlap #: 13 Alignment: ARTGGAKCACTGTGACAVCACAGTGG-------- -------------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Original Motif ACAGTGYTCCAKTCMDTSKKKSTGRHGGYGCTGT TGTGGTGTCACAGTGCTCC TRYVGTGTYMCAGTSCTYCKKKSTGRHGGYGCTGT Direction: Forward Position #: 2 Overlap #: 18 Alignment: -ACAGTGYTCCAKTCMDTSKKKSTGRHGGYGCTGT TGTGGTGTCACAGTGCTCC---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Original Motif ACAGCKCCHKCASYRYGKAGSACTGYKACACVMMA YDRCCASYAGRKGGCRSYV ACAGCKBBDYCASYAGGKRGCACTGYKACACVMMA Direction: Forward Position #: 7 Overlap #: 19 Alignment: ACAGCKCCHKCASYRYGKAGSACTGYKACACVMMA ------YDRCCASYAGRKGGCRSYV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Original Motif TRYVGTGTYMCAGTGCMYCCTKSTGKDBBYGCTGT CAHCACAGTGGAGCACT CAHYACAGTGKMRCASTGCMYCCTKSTGKDBBYGCTGT Direction: Forward Position #: 4 Overlap #: 14 Alignment: ---TRYVGTGTYMCAGTGCMYCCTKSTGKDBBYGCTGT CAHCACAGTGGAGCACT--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Reverse Complement Reverse Complement ACAGCKBBDYCASYAGGKRGCASTGMYYCACTGTKDTG ABCACAGTGGAGCACTG ACAGCKBBABCACHRTGGAGCASTGMYYCACTGTKDTG Direction: Forward Position #: 9 Overlap #: 17 Alignment: ACAGCKBBDYCASYAGGKRGCASTGMYYCACTGTKDTG --------ABCACAGTGGAGCACTG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif ACAGCKBBABCACHRTGGAGCASTGMYYCACTGTKDTG AMTGTGACACCACAGT ACWGYGACACCACAGTGGAGCASTGMYYCACTGTKDTG Direction: Forward Position #: 1 Overlap #: 16 Alignment: ACAGCKBBABCACHRTGGAGCASTGMYYCACTGTKDTG AMTGTGACACCACAGT---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Original Motif CAHYACAGTGKMRCASTGCTCCACTGTGGTGTCMCWGT RAGKGMAGVRRGSRCASAGV RAGBRCHRHAGKGDMRCAGDGCTCCACTGTGGTGTCMCWGT Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---CAHYACAGTGKMRCASTGCTCCACTGTGGTGTCMCWGT RAGKGMAGVRRGSRCASAGV--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Reverse Complement ACWGYGACACCACAGTGGAGCDCTGKRHCRCTDMHGKBCTK MGGTCAGGGTGACCTRDBHV ACWGYGACAMSRYMRKGGWGMCCTGDVHCRCTDMHGKBCTK Direction: Forward Position #: 10 Overlap #: 20 Alignment: ACWGYGACACCACAGTGGAGCDCTGKRHCRCTDMHGKBCTK ---------MGGTCAGGGTGACCTRDBHV------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 78 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGCkTGCssk gCGCGCsCgsG Original Motif Original Motif SSGCKTGCSSK GCGCGCSCGCG SCGCGYGCSSG Direction: Backward Position #: 1 Overlap #: 11 Alignment: SSGCKTGCSSK GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk Combined Motif Reverse Complement Original Motif CSSGCKCGCGS SBCCCCGCCSBB CSSSCBCGCSSBB Direction: Forward Position #: 2 Overlap #: 10 Alignment: CSSGCKCGCGS-- -SBCCCCGCCSBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Reverse Complement Original Motif BBSSGCGBGSSSG BSCCCCGCGBS BBSCSCGCGSSSG Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBSSGCGBGSSSG BSCCCCGCGBS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cCGCGGrCACG Reverse Complement Reverse Complement CSSSCGCGSGSBB CGTGKCCGCGG CGBGYSCGCGSBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: CSSSCGCGSGSBB CGTGKCCGCGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 79 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cCGCGGrCACG gCGCGCsCgsG Original Motif Original Motif CCGCGGRCACG GCGCGCSCGCG SCGCGSRCRCG Direction: Backward Position #: 1 Overlap #: 11 Alignment: CCGCGGRCACG GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Original Motif SCGCGSRCRCG CTGCTGBDBBDGBD SYGCKGVCDCDGBD Direction: Forward Position #: 1 Overlap #: 11 Alignment: SCGCGSRCRCG--- CTGCTGBDBBDGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement SYGCKGVCDCDGBD GGYGCTGTCCATGGTGCTGAA GSYGCTGBCCVDGGTGCTGAA Direction: Forward Position #: 2 Overlap #: 14 Alignment: -SYGCKGVCDCDGBD------ GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Reverse Complement TTCAGCACCDVGGVCAGCKSC MGGTCAGGGTGACCTRDBHV TTCARSRYCAVGGWSASCKVBBHV Direction: Forward Position #: 5 Overlap #: 17 Alignment: TTCAGCACCDVGGVCAGCKSC--- ----MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGCkTGCssk Combined Motif Reverse Complement Original Motif VDBBVRGSTSWCCVTGKMSMTGAA SSGCKTGCSSK VDBBSVGCKYGCSSKGKMSMTGAA Direction: Forward Position #: 5 Overlap #: 11 Alignment: VDBBVRGSTSWCCVTGKMSMTGAA ----SSGCKTGCSSK--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCCCCGCSssk Original Motif Reverse Complement VDBBSVGCKYGCSSKGKMSMTGAA BBSGGCGGGGBS BBSGGCGSKKVCSSKGKMSMTGAA Direction: Forward Position #: 1 Overlap #: 12 Alignment: VDBBSVGCKYGCSSKGKMSMTGAA BBSGGCGGGGBS------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Reverse Complement TTCARSRYCRSSGVYYSCGCCSBB BMSMGCCYMCTKSTGGMHM TTCARBVBCRCCBCCYSCKSSVBV Direction: Forward Position #: 6 Overlap #: 19 Alignment: TTCARSRYCRSSGVYYSCGCCSBB -----BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif BBVSSRGSMGGBGGMGBBBMTGAA HCAGRRVACASAG BBVBCAGVAVRVRSMGBBBMTGAA Direction: Forward Position #: 4 Overlap #: 13 Alignment: BBVSSRGSMGGBGGMGBBBMTGAA ---HCAGRRVACASAG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Reverse Complement BBVBCAGVAVRVRSMGBBBMTGAA GTGTGTGTGTGTGT TGTGHGBVKGTGHKBBVBCAGVAVRVR Direction: Backward Position #: 4 Overlap #: 11 Alignment: BBVBCAGVAVRVRSMGBBBMTGAA--- -------------GTGTGTGTGTGTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 80 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- taaacgatgcc Motif 50 Original Motif Reverse Complement TAAACGATGCC TATKCTAAACCTAT TMWAMRMYKMYTAT Direction: Backward Position #: 1 Overlap #: 11 Alignment: ---TAAACGATGCC TATKCTAAACCTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Reverse Complement TMWAMRMYKMYTAT ATYAATGAAWACAT ATYAATGWAWACAHYKMYTAT Direction: Forward Position #: 8 Overlap #: 7 Alignment: -------TMWAMRMYKMYTAT ATYAATGAAWACAT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Reverse Complement Reverse Complement ATAKYYKHTGTWTWCATTKAT GTTGACCTTTGACCTTT ATAKYYKHTGTWTWCRTTGAYCTTTGACCTTT Direction: Forward Position #: 16 Overlap #: 6 Alignment: ATAKYYKHTGTWTWCATTKAT----------- ---------------GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 13 Reverse Complement Original Motif AAAGGTCAAAGKTCAAKGWAWACAHYKKYTAT AACATATTTTCA AACATHTTTTMWAAAGGTCAAAGKTCAAKGWA Direction: Backward Position #: 1 Overlap #: 12 Alignment: AAAGGTCAAAGKTCAAKGWAWACAHYKKYTAT --------------------AACATATTTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 81 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ctatacggacg Motif 31 Original Motif Reverse Complement CTATACGGACG CTTKACAGAAT CTWTACRGAMK Direction: Forward Position #: 1 Overlap #: 11 Alignment: CTATACGGACG CTTKACAGAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif srACyCCGAyr Reverse Complement Reverse Complement YYTCKGTAWAG KKTCGGKGTKS BBTCGGTRTDG Direction: Forward Position #: 1 Overlap #: 11 Alignment: YYTCKGTAWAG KKTCGGKGTKS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 50 Combined Motif Original Motif Original Motif BBTCGGTRTDG ATAGGTTTAGYATA BDTMGGTKTAGYATA Direction: Forward Position #: 2 Overlap #: 10 Alignment: BBTCGGTRTDG---- -ATAGGTTTAGYATA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement BDTMGGTKTAGYATA TGTGTGWGTGTGTGTGTG GYATATVTVKGTKTRTGTGTGWG Direction: Backward Position #: 6 Overlap #: 10 Alignment: --------BDTMGGTKTAGYATA -----TGTGTGWGTGTGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 82 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- gCGCGCsCgsG cCGCGGrCACG Original Motif Original Motif GCGCGCSCGCG CCGCGGRCACG SCGCGSRCRCG Direction: Backward Position #: 1 Overlap #: 11 Alignment: GCGCGCSCGCG CCGCGGRCACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCkTGCssk Reverse Complement Reverse Complement CGKGMSCGCGS YSSGCAYGCSS CSBGCRCGCGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: CGKGMSCGCGS YSSGCAYGCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Original Motif Reverse Complement CSBGCRCGCGS SBCGCGGGGSB CSCGCGSGSGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: CSBGCRCGCGS SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk Combined Motif Original Motif Original Motif CSCGCGSGSGS SBCCCCGCCSBB CSSSCSCGCSSBB Direction: Forward Position #: 2 Overlap #: 10 Alignment: CSCGCGSGSGS-- -SBCCCCGCCSBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement CSSSCSCGCSSBB BMSMGCCYMCTKSTGGMHM CBVSCGCSCCCTKSTGGMHM Direction: Forward Position #: 2 Overlap #: 12 Alignment: CSSSCSCGCSSBB------- -BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif YDRCCASYAGGGSGCGSVBG VDBHMAGGTCACCCTGACCY YDRCCASBMRGGBSMSCVTGACCY Direction: Forward Position #: 5 Overlap #: 16 Alignment: YDRCCASYAGGGSGCGSVBG---- ----VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement YDRCCASBMRGGBSMSCVTGACCY HVCDBBDBCAGCAG YDRCCHVCHVBGBCAGCDBGACCY Direction: Forward Position #: 6 Overlap #: 14 Alignment: YDRCCASBMRGGBSMSCVTGACCY -----HVCDBBDBCAGCAG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Combined Motif Original Motif Original Motif YDRCCHVCHVBGBCAGCDBGACCY BAACGTCCGC YDRCCHVBAACGTCMGCDBGACCY Direction: Forward Position #: 8 Overlap #: 10 Alignment: YDRCCHVCHVBGBCAGCDBGACCY -------BAACGTCCGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Original Motif Original Motif YDRCCHVBAACGTCMGCDBGACCY YGCCACCTDSTGGY YGYCMSCDDGWSSYYDRCCHVBAA Direction: Backward Position #: 1 Overlap #: 14 Alignment: YDRCCHVBAACGTCMGCDBGACCY ----------YGCCACCTDSTGGY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Original Motif Reverse Complement YGYCMSCDDGWSSYYDRCCHVBAA DCCACGTGCV YGCCACSTGSDSSYYDRCCHVBAA Direction: Forward Position #: 2 Overlap #: 10 Alignment: YGYCMSCDDGWSSYYDRCCHVBAA -DCCACGTGCV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 83 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- srACyCCGAyr TFM11 Reverse Complement Reverse Complement KKTCGGKGTKS TGTGTGDKTGTGTGTGTRTG GTGTRTGKKTSGGTGTGBTG Direction: Backward Position #: 8 Overlap #: 11 Alignment: --KKTCGGKGTKS------- TGTGTGDKTGTGTGTGTRTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement GTGTRTGKKTSGGTGTGBTG MGGTCAGGGTGACCTRDBHV MGGTSWGKGTGWCBKDGTBBTG Direction: Forward Position #: 3 Overlap #: 18 Alignment: --GTGTRTGKKTSGGTGTGBTG MGGTCAGGGTGACCTRDBHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Original Motif Reverse Complement MGGTSWGKGTGWCBKDGTBBTG TGTGTGWGTGTGTGTGTG TVKGTSWGTGTGTSTGTGTBBTG Direction: Forward Position #: 2 Overlap #: 17 Alignment: -MGGTSWGKGTGWCBKDGTBBTG TGTGTGWGTGTGTGTGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif CABBACACASACACACWSACRBA TGGAGCACTGTGACAVCACAGTGG TGGAGCACTGTGACAVCACAGTRSACASACACACWSACRBA Direction: Forward Position #: 19 Overlap #: 6 Alignment: ------------------CABBACACASACACACWSACRBA TGGAGCACTGTGACAVCACAGTGG----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Reverse Complement TVKGTSWGTGTGTSTGTSMACTGTGVTGTCACAGTGCTCCA BAGGYCABHBTGACCKHV TAGGTSABBGTGWCYKTVMACTGTGVTGTCACAGTGCTCCA Direction: Forward Position #: 1 Overlap #: 18 Alignment: TVKGTSWGTGTGTSTGTSMACTGTGVTGTCACAGTGCTCCA BAGGYCABHBTGACCKHV----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Original Motif TAGGTSABBGTGWCYKTVMACTGTGVTGTCACAGTGCTCCA TGTGGTGTCACAGTGCTCC TGTKVKGTCACWGTGHYCBTVMACTGTGVTGTCACAGTGCTCCA Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---TAGGTSABBGTGWCYKTVMACTGTGVTGTCACAGTGCTCCA TGTGGTGTCACAGTGCTCC------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Reverse Complement Reverse Complement TGGAGCACTGTGACAVCACAGTRVABGMDCACWGTGACRVYACA TGTGTSWGTBTSTG TGTGKADSWCTGTGACAVCACAGTRVABGMDCACWGTGACRVYACA Direction: Forward Position #: 3 Overlap #: 12 Alignment: --TGGAGCACTGTGACAVCACAGTRVABGMDCACWGTGACRVYACA TGTGTSWGTBTSTG-------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement TGTGKADSWCTGTGACAVCACAGTRVABGMDCACWGTGACRVYACA AGTGSWSCACTGTGAMAMCACAGTG WGTGBAGCACTGTGACAVCACAGTGVABGMDCACWGTGACRVYACA Direction: Forward Position #: 1 Overlap #: 25 Alignment: TGTGKADSWCTGTGACAVCACAGTRVABGMDCACWGTGACRVYACA AGTGSWSCACTGTGAMAMCACAGTG--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement TGTKVKGTCACWGTGHYCBTVCACTGTGVTGTCACAGTGCTBCACW GGYGCTGTCCATGGTGCTGAA KGTGCTGTCMHWGKKVCYGDVCACTGTGVTGTCACAGTGCTBCACW Direction: Forward Position #: 1 Overlap #: 21 Alignment: TGTKVKGTCACWGTGHYCBTVCACTGTGVTGTCACAGTGCTBCACW GGYGCTGTCCATGGTGCTGAA------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Reverse Complement Reverse Complement WGTGBAGCACTGTGACAVCACAGTGBDCMGVRYCWDRGACAGCACR GTGTGTGTGTGTGT GWGTGKDKSWSTGTGACAVCACAGTGBDCMGVRYCWDRGACAGCACR Direction: Forward Position #: 2 Overlap #: 13 Alignment: -WGTGBAGCACTGTGACAVCACAGTGBDCMGVRYCWDRGACAGCACR GTGTGTGTGTGTGT--------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 84 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 TgTGgTGTCACAGTGCTCC Reverse Complement Original Motif CAGTGC TGTGGTGTCACAGTGCTCC ACAGTGCTCCSRKKKCTGT Direction: Backward Position #: 11 Overlap #: 6 Alignment: ---CAGTGC---------- TGTGGTGTCACAGTGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif ACAGTGCTCCSRKKKCTGT CACTGTGRTRTCACAGTGSWSCACT CACWGTGVTVYCAYWGYKSTSCACT Direction: Forward Position #: 2 Overlap #: 19 Alignment: -ACAGTGCTCCSRKKKCTGT----- CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement CACWGTGVTVYCAYWGYKSTSCACT CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVTGTCACAGTGCTCCACT Direction: Forward Position #: 2 Overlap #: 23 Alignment: -CACWGTGVTVYCAYWGYKSTSCACT CCACTGTGVTGTCACAGTGCTCCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Reverse Complement AGTGGAGCACTGTGACAVCACAGTGG AGTGCTCCACTGTGDTG AGTGSWSCACTGTGVYRVCACAGTGG Direction: Forward Position #: 1 Overlap #: 17 Alignment: AGTGGAGCACTGTGACAVCACAGTGG AGTGCTCCACTGTGDTG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif AGTGSWSCACTGTGVYRVCACAGTGG CAGTGCTCCACTGTGBT CAGTGCTCCACTGTGVTRVCACAGTGG Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AGTGSWSCACTGTGVYRVCACAGTGG CAGTGCTCCACTGTGBT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement CAGTGCTCCACTGTGVTRVCACAGTGG ACTGTGACACCACAGTGGAGCACT ACYRKKRCWCCACWGTGGWGCMMYAGTGG Direction: Forward Position #: 3 Overlap #: 22 Alignment: --CAGTGCTCCACTGTGVTRVCACAGTGG ACTGTGACACCACAGTGGAGCACT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement CCACTKYYGCWCCACWGTGGWGKYRMMGT GGYGCTGTCCATGGTGCTGAA TGCTGAAGVHVCWSTSYRBKGCCACTKYYGCWCCAC Direction: Backward Position #: 8 Overlap #: 14 Alignment: CCACTKYYGCWCCACWGTGGWGKYRMMGT------- ---------------GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 85 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Motif 25 Original Motif Reverse Complement TTGCGCAA TTYGGAAAGCAG KWRMGCARTTYG Direction: Backward Position #: 1 Overlap #: 8 Alignment: ----TTGCGCAA TTYGGAAAGCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Original Motif KWRMGCARTTYG TGAMCTTTGMMCYT TTYGTDAMSYWDTGAMCT Direction: Backward Position #: 5 Overlap #: 8 Alignment: ------KWRMGCARTTYG ----TGAMCTTTGMMCYT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Original Motif AGRTCADWKSYTHACKAA BTRGGDCARAGGKCA BTAGGTCARAGGYYAACKAA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --AGRTCADWKSYTHACKAA BTRGGDCARAGGKCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 32 Original Motif Reverse Complement BTAGGTCARAGGYYAACKAA TTTACTAAAT ATKKTACWMDBTAGGTCARAGG Direction: Backward Position #: 3 Overlap #: 8 Alignment: BTAGGTCARAGGYYAACKAA-- ------------TTTACTAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 86 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 wwCCAmAGTCmt Original Motif Reverse Complement YGGACTTACG VDGACTRTGGDD BRSWSTKRHBVD Direction: Backward Position #: 1 Overlap #: 10 Alignment: --YGGACTTACG VDGACTRTGGDD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Original Motif Reverse Complement BRSWSTKRHBVD TGACCTTGMBBB TGVMCTTGMBVD Direction: Forward Position #: 1 Overlap #: 12 Alignment: BRSWSTKRHBVD TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Reverse Complement TGVMCTTGMBVD TGMYCTTTGBCCK TGVYCTTKVBHCK Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGVMCTTGMBVD- TGMYCTTTGBCCK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement TGVYCTTKVBHCK GGYGCTGTCCATGGTGCTGAA KGHBCTKTCCHHGGTGCTGAA Direction: Forward Position #: 1 Overlap #: 13 Alignment: TGVYCTTKVBHCK-------- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Original Motif KGHBCTKTCCHHGGTGCTGAA TGAMCTTTGMMCYT TGAVCTTTSVMCBGTGCTGAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: KGHBCTKTCCHHGGTGCTGAA TGAMCTTTGMMCYT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement TTCAGCACBGYVSAAAGVTCA MGGTCAGGGTGACCTRDBHV MGGTCAGSAYGRCCBRRVGVTCA Direction: Forward Position #: 3 Overlap #: 18 Alignment: --TTCAGCACBGYVSAAAGVTCA MGGTCAGGGTGACCTRDBHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Reverse Complement TGAVCBKKVGGKCMTSCTGACCY TGRCCTKTGHCCKAB TGACCTKTVVBBBABSCTGACCY Direction: Forward Position #: 1 Overlap #: 15 Alignment: TGAVCBKKVGGKCMTSCTGACCY TGRCCTKTGHCCKAB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 87 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 HNF4A Reverse Complement Reverse Complement VVTCTTTGTCCT TGMYCTTTGBCCK TGVYCTTTGBCCT Direction: Forward Position #: 2 Overlap #: 12 Alignment: -VVTCTTTGTCCT TGMYCTTTGBCCK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Reverse Complement TGVYCTTTGBCCT TGRCCTKTGHCCKAB TGVYCTTTGBCCKAB Direction: Forward Position #: 1 Overlap #: 13 Alignment: TGVYCTTTGBCCT-- TGRCCTKTGHCCKAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement BTRGGBCAAAGKBCA BAGGYCABHBTGACCKHV BTVRGGYMAVGBTSACCKHV Direction: Forward Position #: 3 Overlap #: 13 Alignment: BTRGGBCAAAGKBCA----- --BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif BTVRGGYMAVGBTSACCKHV VDBHMAGGTCACCCTGACCY BTVRGDBMMAGGTSACCBTGACCY Direction: Forward Position #: 5 Overlap #: 16 Alignment: BTVRGGYMAVGBTSACCKHV---- ----VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement BTVRGDBMMAGGTSACCBTGACCY VCTSTGKSCMKBCTRCYCTK BTVRGDCHVWGKBCMBHCTGMCCTK Direction: Forward Position #: 6 Overlap #: 19 Alignment: BTVRGDBMMAGGTSACCBTGACCY- -----VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Reverse Complement Original Motif RAGGRCAGDBYGVYCWVHGHCMBAB TGAMCTTTGMMCYT RAGKGMMCTTTGVHCHBHGHCMBAB Direction: Forward Position #: 4 Overlap #: 14 Alignment: RAGGRCAGDBYGVYCWVHGHCMBAB ---TGAMCTTTGMMCYT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Original Motif Reverse Complement RAGKGMMCTTTGVHCHBHGHCMBAB GTTGACCTTTGACCTTT RVKTGACCTTTGACCTBWGHCMBAB Direction: Forward Position #: 2 Overlap #: 17 Alignment: RAGKGMMCTTTGVHCHBHGHCMBAB -GTTGACCTTTGACCTTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif BTVRGDCWVAGGTCAAAGGTCARVK CACTGTGRTRTCACAGTGSWSCACT CACTGTGRTRTCACAGTGVDBCAVWGGTCAAAGGTCARVK Direction: Forward Position #: 16 Overlap #: 10 Alignment: ---------------BTVRGDCWVAGGTCAAAGGTCARVK CACTGTGRTRTCACAGTGSWSCACT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement CACTGTGRTRTCACAGTGVDBCAVWGGTCAAAGGTCARVK CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVTGTCACAGTGCTCCAVWGGTCAAAGGTCARVK Direction: Forward Position #: 2 Overlap #: 23 Alignment: -CACTGTGRTRTCACAGTGVDBCAVWGGTCAAAGGTCARVK CCACTGTGVTGTCACAGTGCTCCA----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement RVKTGACCTTTGACCWVTGGAGCACTGTGACAVCACAGTGG GGYGCTGTCCATGGTGCTGAA GGVVBTGWCCHTKGWSCTGWRGAGCACTGTGACAVCACAGTGG Direction: Forward Position #: 3 Overlap #: 19 Alignment: --RVKTGACCTTTGACCWVTGGAGCACTGTGACAVCACAGTGG GGYGCTGTCCATGGTGCTGAA---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 88 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 TFM2 Original Motif Reverse Complement CTGCTGBDBBDGBD GCAGAKGSAGGABDGHDG GCWGMTGSDGBHBDVHDG Direction: Forward Position #: 2 Overlap #: 14 Alignment: -CTGCTGBDBBDGBD--- GCAGAKGSAGGABDGHDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif CHHVHBHBCDSCARCWGC RAGKGMAGVRRGSRCASAGV CHHVHVDBCWGCRRSDVCASAGV Direction: Forward Position #: 4 Overlap #: 15 Alignment: CHHVHBHBCDSCARCWGC----- ---RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement VCTSTGVDSMKGCWGBDVHVHDG GGYGCTGTCCATGGTGCTGAA GVCKCTGYCCMTGSTGCTGHVHDG Direction: Forward Position #: 2 Overlap #: 20 Alignment: -VCTSTGVDSMKGCWGBDVHVHDG GGYGCTGTCCATGGTGCTGAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif GVCKCTGYCCMTGSTGCTGHVHDG VDBHMAGGTCACCCTGACCY GVBBCWGKBCABSSTGMYSHVHDG Direction: Forward Position #: 1 Overlap #: 20 Alignment: GVCKCTGYCCMTGSTGCTGHVHDG VDBHMAGGTCACCCTGACCY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Reverse Complement GVBBCWGKBCABSSTGMYSHVHDG BAGGYCABHBTGACCKHV BVGBHCABBBYRHCCTDVYSHVHDG Direction: Forward Position #: 2 Overlap #: 17 Alignment: -GVBBCWGKBCABSSTGMYSHVHDG BAGGYCABHBTGACCKHV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif CHHBHSKVHAGGHMMBBBTGHBCBB BTRGGDCARAGGKCA CHHBHSBVBRGSAMAGGBHRHBCBB Direction: Forward Position #: 6 Overlap #: 15 Alignment: CHHBHSKVHAGGHMMBBBTGHBCBB -----BTRGGDCARAGGKCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Original Motif BVGBHKDVCCTYTSCMBVVSHVHDG TGTGGTGTCACAGTGCTCC TBHGGTGTCMCWKTGCHCCVSHVHDG Direction: Forward Position #: 2 Overlap #: 18 Alignment: -BVGBHKDVCCTYTSCMBVVSHVHDG TGTGGTGTCACAGTGCTCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement CHHBHSBGGHGCAYWGYGACACCHBA CCACTGTGVTGTCACAGTGCTCCA CCACTDTDBTGKCRCASTGYKMCACCHBA Direction: Forward Position #: 4 Overlap #: 21 Alignment: ---CHHBHSBGGHGCAYWGYGACACCHBA CCACTGTGVTGTCACAGTGCTCCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Reverse Complement CCACTDTDBTGKCRCASTGYKMCACCHBA CKGGDTBDMMCTGG CCACYKKGDTDKMVCWGKGYKMCACCHBA Direction: Forward Position #: 5 Overlap #: 14 Alignment: CCACTDTDBTGKCRCASTGYKMCACCHBA ----CKGGDTBDMMCTGG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Original Motif Original Motif CCACYKKGDTDKMVCWGKGYKMCACCHBA YDRCCASYAGRKGGCRSYV YDVCMMCBRGRKGGCRCHVKGYKMCACCHBA Direction: Forward Position #: 3 Overlap #: 17 Alignment: --CCACYKKGDTDKMVCWGKGYKMCACCHBA YDRCCASYAGRKGGCRSYV------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 89 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 TFM11 Reverse Complement Reverse Complement TGTGTGWGTGTGTGTGTG TGTGTGDKTGTGTGTGTRTG TGTGTGDKTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 18 Alignment: TGTGTGWGTGTGTGTGTG-- TGTGTGDKTGTGTGTGTRTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TGTGTGDKTGTGTGTGTGTG KTTTTTTKTTTTTTDAAB TGTGTKTKTKTGTKTKTKKRAB Direction: Forward Position #: 5 Overlap #: 16 Alignment: TGTGTGDKTGTGTGTGTGTG-- ----KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement BTKRRARARACAYARAYACACA MGGTCAGGGTGACCTRDBHV MGGTBARRDWGACMTRRVBVCACA Direction: Forward Position #: 3 Overlap #: 18 Alignment: --BTKRRARARACAYARAYACACA MGGTCAGGGTGACCTRDBHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement MGGTBARRDWGACMTRRVBVCACA GGAGCACTGTGACACCACA RGRKCAVWGTGACAYVAVHVCACA Direction: Forward Position #: 1 Overlap #: 19 Alignment: MGGTBARRDWGACMTRRVBVCACA GGAGCACTGTGACACCACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Reverse Complement RGRKCAVWGTGACAYVAVHVCACA WHAATTAAARAARAAAAAAA RGRKCAHDRTKAMAVAAVAAMAMAA Direction: Forward Position #: 6 Overlap #: 19 Alignment: RGRKCAVWGTGACAYVAVHVCACA- -----WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Original Motif Original Motif RGRKCAHDRTKAMAVAAVAAMAMAA CASABACWSACACA CRVACACWRWSACAVAAVAAMAMAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: RGRKCAHDRTKAMAVAAVAAMAMAA CASABACWSACACA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Original Motif CRVACACWRWSACAVAAVAAMAMAA HAAAAHAAARMAAA CRVACAMAAAVAMARMAAAAMAMAA Direction: Forward Position #: 6 Overlap #: 14 Alignment: CRVACACWRWSACAVAAVAAMAMAA -----HAAAAHAAARMAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Original Motif CRVACAMAAAVAMARMAAAAMAMAA ACACACACACACAC ACACACACAMACACARMAAAAMAMAA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -CRVACAMAAAVAMARMAAAAMAMAA ACACACACACACAC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Reverse Complement ACACACACAMACACARMAAAAMAMAA BAGGYCABHBTGACCKHV BARSHCACHBWGACMBAVMAAAAMAMAA Direction: Forward Position #: 3 Overlap #: 16 Alignment: --ACACACACAMACACARMAAAAMAMAA BAGGYCABHBTGACCKHV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement TTYTYTTTTYVTBYGTCWBHGTGHSMTB GGYGCTGTCCATGGTGCTGAA GGTGCTGAAKKYVYTBKYCADTTYTYTTTTYVTBYGT Direction: Backward Position #: 10 Overlap #: 12 Alignment: TTYTYTTTTYVTBYGTCWBHGTGHSMTB--------- ----------------GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 90 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 TFM12 Reverse Complement Original Motif GCAGAKGSAGGABDGHDG RAGKGMAGVRRGSRCASAGV RAGBRSAGGVRGSVBDGAGB Direction: Forward Position #: 3 Overlap #: 18 Alignment: --GCAGAKGSAGGABDGHDG RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif BCTCDBBSCKVCCTSKBCTK VDBHMAGGTCACCCTGACCY BCTCDBBCCDGSYYVBBCTGACCY Direction: Forward Position #: 5 Overlap #: 16 Alignment: BCTCDBBSCKVCCTSKBCTK---- ----VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement BCTCDBBCCDGSYYVBBCTGACCY BMSMGCCYMCTKSTGGMHM BCTCDBHSMGSCYCCTBSTGRCCH Direction: Forward Position #: 6 Overlap #: 19 Alignment: BCTCDBBCCDGSYYVBBCTGACCY -----BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement BCTCDBHSMGSCYCCTBSTGRCCH CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVTGTCWCAGTGCTCCHCCTBSTGRCCH Direction: Forward Position #: 12 Overlap #: 13 Alignment: -----------BCTCDBHSMGSCYCCTBSTGRCCH CCACTGTGVTGTCACAGTGCTCCA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement DGGMCASBAGGHGGAGCACTGWGACAVCACAGTGG BAGGYCABHBTGACCKHV DGGMCAGGHSRHBSWGMMCKDDGACAVCACAGTGG Direction: Forward Position #: 5 Overlap #: 18 Alignment: DGGMCASBAGGHGGAGCACTGWGACAVCACAGTGG ----BAGGYCABHBTGACCKHV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif DGGMCAGGHSRHBSWGMMCKDDGACAVCACAGTGG BTRGGDCARAGGKCA DGGVBAGGDSADRGKKVMCKDDGACAVCACAGTGG Direction: Forward Position #: 4 Overlap #: 15 Alignment: DGGMCAGGHSRHBSWGMMCKDDGACAVCACAGTGG ---BTRGGDCARAGGKCA----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Original Motif CCACTGTGVTGTCDHRGYVYYCKDTSHCCTBVCCH CACTGTGRTRTCACAGTGSWSCACT CCACTGTGVTGTCACAGTGCWCCAYKHCCTBVCCH Direction: Forward Position #: 2 Overlap #: 25 Alignment: CCACTGTGVTGTCDHRGYVYYCKDTSHCCTBVCCH -CACTGTGRTRTCACAGTGSWSCACT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Original Motif DGGVBAGGDRMTGGWGCACTGTGACAVCACAGTGG CTGCTGBDBBDGBD DGGVBAGSDGCTGSHBCASTGTGACAVCACAGTGG Direction: Forward Position #: 8 Overlap #: 14 Alignment: DGGVBAGGDRMTGGWGCACTGTGACAVCACAGTGG -------CTGCTGBDBBDGBD-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Reverse Complement Reverse Complement CCACTGTGVTGTCACASTGBHSCAGCDSCTBVCCH CKGGDTBDMMCTGG CCACTSTGGTKBCAHCBKGBHSCAGCDSCTBVCCH Direction: Forward Position #: 6 Overlap #: 14 Alignment: CCACTGTGVTGTCACASTGBHSCAGCDSCTBVCCH -----CKGGDTBDMMCTGG---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Reverse Complement DGGVBAGSDGCTGSHBCYBGDTGVYACCASAGTGG GGYGCTGTCCATGGTGCTGAA DGGVBAGSHGCTGTCCMHGGTBCTBAVCASAGTGG Direction: Forward Position #: 7 Overlap #: 21 Alignment: DGGVBAGSDGCTGSHBCYBGDTGVYACCASAGTGG ------GGYGCTGTCCATGGTGCTGAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 91 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 TFM13 Original Motif Original Motif KTTTTTTKTTTTTTDAAB TTTTTTTKTTKTTTAATTHW TTTTTTTKTTTTTTDAWKHW Direction: Forward Position #: 1 Overlap #: 18 Alignment: KTTTTTTKTTTTTTDAAB-- TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Original Motif Reverse Complement TTTTTTTKTTTTTTDAWKHW TGTGTGWGTGTGTGTGTG TDTKTKTKTKTKTKTRWKHW Direction: Forward Position #: 1 Overlap #: 18 Alignment: TTTTTTTKTTTTTTDAWKHW TGTGTGWGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Reverse Complement TDTKTKTKTKTKTKTRWKHW TGTGTGDKTGTGTGTGTRTG TGTKTGTKTGTGTGTRTGHK Direction: Forward Position #: 1 Overlap #: 20 Alignment: TDTKTKTKTKTKTKTRWKHW TGTGTGDKTGTGTGTGTRTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Original Motif Reverse Complement TGTKTGTKTGTGTGTRTGHK ATTTTTTTTTTTTT ATTTTTTTTTKTTTGTRTGHK Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TGTKTGTKTGTGTGTRTGHK ATTTTTTTTTTTTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Reverse Complement ATTTTTTTTTKTTTGTRTGHK TTTRKTTTHTTTTH WTTKKTTTTTTTTTGTRTGHK Direction: Forward Position #: 1 Overlap #: 14 Alignment: ATTTTTTTTTKTTTGTRTGHK TTTRKTTTHTTTTH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 37 Original Motif Original Motif WTTKKTTTTTTTTTGTRTGHK TTTAATGTYTTTWA TTTAWTKTYTTTWWGTRTGHK Direction: Forward Position #: 1 Overlap #: 14 Alignment: WTTKKTTTTTTTTTGTRTGHK TTTAATGTYTTTWA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Reverse Complement Original Motif YHCAMACWWAAAMAYAWTAAA CASABACWSACACA CACAVACWVAMACAYAWTAAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: YHCAMACWWAAAMAYAWTAAA CASABACWSACACA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Reverse Complement Original Motif TTTAWTKTGTYTBWGTVTGTG TAASTCTWTTTTAA TTWAVTSTDTTTTARTVTGTG Direction: Forward Position #: 2 Overlap #: 14 Alignment: TTTAWTKTGTYTBWGTVTGTG -TAASTCTWTTTTAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Reverse Complement Original Motif CACAVAKTAAAADASAVTWAA AAAGRTMAAACTA CAMAGRTHAAAMTASAVTWAA Direction: Forward Position #: 2 Overlap #: 13 Alignment: CACAVAKTAAAADASAVTWAA -AAAGRTMAAACTA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Reverse Complement Original Motif TTWAVTSTARTTTHAKCTYTG ATGTWTTCATTMAT TTAWGTHTWCWTTMATCTYTG Direction: Forward Position #: 3 Overlap #: 14 Alignment: TTWAVTSTARTTTHAKCTYTG --ATGTWTTCATTMAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 92 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 TFM13 Reverse Complement Original Motif TGTGTGDKTGTGTGTGTRTG TTTTTTTKTTKTTTAATTHW TTKTKTKKTTKTKTRWKTVTG Direction: Forward Position #: 2 Overlap #: 19 Alignment: -TGTGTGDKTGTGTGTGTRTG TTTTTTTKTTKTTTAATTHW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif CABAYWMAYAYAARYARARAA CACACACACACWCACACA CABACACACACAMAYAVAVAMA Direction: Forward Position #: 5 Overlap #: 17 Alignment: CABAYWMAYAYAARYARARAA- ----CACACACACACWCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Original Motif TYTVTVTKTRTGTGTGTGTVTG TGTGGTGTCACAGTGCTCC TYTVTVTKKDKGTGTSWBWGTGCTCC Direction: Forward Position #: 8 Overlap #: 15 Alignment: TYTVTVTKTRTGTGTGTGTVTG---- -------TGTGGTGTCACAGTGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TYTVTVTKKDKGTGTSWBWGTGCTCC KTTTTTTKTTTTTTDAAB TYTVTDTTTTTGTKTBWBWRWGCTCC Direction: Forward Position #: 5 Overlap #: 18 Alignment: TYTVTVTKKDKGTGTSWBWGTGCTCC ----KTTTTTTKTTTTTTDAAB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Original Motif Reverse Complement TYTVTDTTTTTGTKTBWBWRWGCTCC TGTGTSWGTBTSTG TGTGTBTKTBTGTKTBWBWRWGCTCC Direction: Forward Position #: 1 Overlap #: 14 Alignment: TYTVTDTTTTTGTKTBWBWRWGCTCC TGTGTSWGTBTSTG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement GGAGCWKWVWVAYACAVAYABACACA VCTSTGKSCMKBCTRCYCTK GGAGCTBWRDVMCWBMDRCWVWBACA Direction: Forward Position #: 4 Overlap #: 20 Alignment: GGAGCWKWVWVAYACAVAYABACACA ---VCTSTGKSCMKBCTRCYCTK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Reverse Complement TGTBWVWGKDYBWGYVDMWBAGCTCC TTTRKTTTHTTTTH TGTBTTTGKTTTHKTDWHWBAGCTCC Direction: Forward Position #: 5 Overlap #: 14 Alignment: TGTBWVWGKDYBWGYVDMWBAGCTCC ----TTTRKTTTHTTTTH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Reverse Complement TGTBTTTGKTTTHKTDWHWBAGCTCC GTGTGTGTGTGTGT GTGTGTKTGTKTGTKTDWHWBAGCTCC Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TGTBTTTGKTTTHKTDWHWBAGCTCC GTGTGTGTGTGTGT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Reverse Complement GGAGCTBWDWDARACAYACAYACACAC GCAGAKGSAGGABDGHDG GSAGMKGBDDVADRBABRCAYACACAC Direction: Forward Position #: 1 Overlap #: 18 Alignment: GGAGCTBWDWDARACAYACAYACACAC GCAGAKGSAGGABDGHDG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Reverse Complement GTGTGTKTGKVTBKHTVHDBCRRCTSC CTSTGTBKMCTGH GTGTSTGTGKBTVHHKHHDBCRRCTSC Direction: Forward Position #: 5 Overlap #: 13 Alignment: GTGTGTKTGKVTBKHTVHDBCRRCTSC ----CTSTGTBKMCTGH---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 93 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif RAGKGMAGVRRGSRCASAGV TGGAGCACTGTGACAVCACAGTGG GGGAGBRCWGTGASAVCACAGTTG Direction: Backward Position #: 3 Overlap #: 20 Alignment: --RAGKGMAGVRRGSRCASAGV-- TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement GGGAGBRCWGTGASAVCACAGTTG AGTGSWSCACTGTGAMAMCACAGTG AGKGSAGCACTGTGACAVCACAGTKG Direction: Forward Position #: 3 Overlap #: 23 Alignment: --GGGAGBRCWGTGASAVCACAGTTG AGTGSWSCACTGTGAMAMCACAGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif AGKGSAGCACTGTGACAVCACAGTKG TTCAGCACCATGGACAGCKCC ACAGCKCCWKCASHRYSAHRGAGKGSAGCACTGT Direction: Backward Position #: 9 Overlap #: 13 Alignment: AGKGSAGCACTGTGACAVCACAGTKG-------- -------------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif ACAGTGCTSCRCTCMDTSKKHSTGRWGGYGCTGT VDBHMAGGTCACCCTGACCY ACAGDGSHCMGSTCABHSTGMCYBRWGGYGCTGT Direction: Forward Position #: 5 Overlap #: 20 Alignment: ACAGTGCTSCRCTCMDTSKKHSTGRWGGYGCTGT ----VDBHMAGGTCACCCTGACCY---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Original Motif ACAGCKCCWKBMGYCASHBTGASCRGHSCDCTGT YDRCCASYAGRKGGCRSYV WSASCACCAGVDGKCRSHVTGASCRGHSCDCTGT Direction: Forward Position #: 1 Overlap #: 19 Alignment: ACAGCKCCWKBMGYCASHBTGASCRGHSCDCTGT YDRCCASYAGRKGGCRSYV--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Original Motif ACAGDGSHCMGSTCAVDSKGYCHVCTGGTGSTSW VHRGGTCABDBTGMCCTB ACAGDGSHHVGGTCAVDBTGHCCYBTGGTGSTSW Direction: Forward Position #: 8 Overlap #: 18 Alignment: ACAGDGSHCMGSTCAVDSKGYCHVCTGGTGSTSW -------VHRGGTCABDBTGMCCTB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Reverse Complement WSASCACCABMGGDCABHVTGACCBDDSCDCTGT GCAGAKGSAGGABDGHDG GCAVVRGCASBABDGDDBABHVTGACCBDDSCDCTGT Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---WSASCACCABMGGDCABHVTGACCBDDSCDCTGT GCAGAKGSAGGABDGHDG------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Reverse Complement ACAGDGSHHVGGTCAVDBTBHHCDBTBSTGCMVVTGC GGAGCACTGTGACACCACA ACAGKRSCACKGTSACASYVCHCDBTBSTGCMVVTGC Direction: Forward Position #: 4 Overlap #: 19 Alignment: ACAGDGSHHVGGTCAVDBTBHHCDBTBSTGCMVVTGC ---GGAGCACTGTGACACCACA--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif GCAVVRGCASBABDGHGBKSTGTSACRGTGSKYCTGT TTTTTTTKTTKTTTAATTHW GCAVVRGCASBABDGHGBKSTGTSACRGTKTTYYTGTTKTTTAATTHW Direction: Forward Position #: 29 Overlap #: 9 Alignment: GCAVVRGCASBABDGHGBKSTGTSACRGTGSKYCTGT----------- ----------------------------TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Reverse Complement Original Motif WHAATTAAARAACAMMAARACKGTSACASYVCHCDBTBSTGCMVVTGC AMTGTGACACCACAGT AHWRTKAMAMMACAVWAARACKGTSACASYVCHCDBTBSTGCMVVTGC Direction: Forward Position #: 1 Overlap #: 16 Alignment: WHAATTAAARAACAMMAARACKGTSACASYVCHCDBTBSTGCMVVTGC AMTGTGACACCACAGT-------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 94 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 TFM11 Reverse Complement Original Motif WHAATTAAARAARAAAAAAA CAMACACACACAYDCACACA AAHAVWYAMAMAMRMAMAMAC Direction: Backward Position #: 2 Overlap #: 19 Alignment: -WHAATTAAARAARAAAAAAA -CAMACACACACAYDCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif GTYTYTYKYTRTYTKWVTDTT KTTTTTTKTTTTTTDAAB KTTTTTTKTTDTTTKAAKDTT Direction: Forward Position #: 1 Overlap #: 18 Alignment: GTYTYTYKYTRTYTKWVTDTT KTTTTTTKTTTTTTDAAB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif AAHRTTYAAADAARAAAAAAY RAGKGMAGVRRGSRCASAGV AAVDKHHRVARRVRMAVARAY Direction: Forward Position #: 1 Overlap #: 20 Alignment: AAHRTTYAAADAARAAAAAAY RAGKGMAGVRRGSRCASAGV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Original Motif Original Motif AAVDKHHRVARRVRMAVARAY CACACACACACWCACACA MAMASAMACAHRCACAMARAY Direction: Forward Position #: 1 Overlap #: 18 Alignment: AAVDKHHRVARRVRMAVARAY CACACACACACWCACACA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-19-2016 20:57:29 Runtime: 853.531 seconds MOTIFSIM is written by Ngoc Tam L. 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