MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.1

INPUT

Input Parameters
Number of files: 1
Number of top significant motifs: 10
Number of best matches: 5
Similarity cutoff >= 0.75
Matching motif database: UniProbe Mus Musculus
Phylogenetic tree: Yes
Combined similar motifs: Yes
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
CisFinder_DM721_Cluster.txt 153 1

RESULTS

Best Matches in Database for Each Motif (Highest to Lowest)

Dataset #: 1 Motif ID: 1 Motif name: C001

Original motif Reverse complement motif
Consensus sequence: WWWAAAAAWWAAAAAWAAAAAWWAAAAHWW Consensus sequence: WWHTTTTWWTTTTTWTTTTTWWTTTTTWWW

Best Matches for Motif ID 1 (Highest to Lowest)

Motif ID: UP00528
Motif name: Foxm1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 23
Similarity score: 0.0846473

Alignment:
-------HADTBVADGATGCATCMTGMVHB
WWWAAAAAWWAAAAAWAAAAAWWAAAAHWW--

Original motif Reverse complement motif
Consensus sequence: HADTBVADGATGCATCMTGMVHB Consensus sequence: VHVRCAYGATGCATCDTVVADTH

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 22
Similarity score: 0.561689

Alignment:
--------HHBDHDDAACAATDRHHHHHBW
WWWAAAAAWWAAAAAWAAAAAWWAAAAHWW-

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 22
Similarity score: 0.566383

Alignment:
--------HBHDVHDTCTTATCTHTDDHDV
WWHTTTTWWTTTTTWTTTTTWWTTTTTWWW-----

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 22
Similarity score: 0.575767

Alignment:
HBHDVBWGATHBTATCRVBHHH--------
------WWWAAAAAWWAAAAAWAAAAAWWAAAAHWW

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 22
Similarity score: 0.578275

Alignment:
--------VVYDDDCHCAVACAATTDBVAC
WWHTTTTWWTTTTTWTTTTTWWTTTTTWWW-----

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Dataset #: 1 Motif ID: 2 Motif name: C002

Original motif Reverse complement motif
Consensus sequence: TAYRYACACACACACACRYAYRY Consensus sequence: MKKTKKGTGTGTGTGTGTKKKTA

Best Matches for Motif ID 2 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 23
Similarity score: 0.0589959

Alignment:
MHHHWHYTMCCHCCCACVAABVH
TAYRYACACACACACACRYAYRY

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 23
Similarity score: 0.0678722

Alignment:
YDYBDHTMCACGTGGADDBMDGT
TAYRYACACACACACACRYAYRY

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 23
Similarity score: 0.0739216

Alignment:
BBBDVVRGACCACCCAVGABBAB
TAYRYACACACACACACRYAYRY

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 23
Similarity score: 0.077586

Alignment:
DTVBDDRGACCACCCAGDWDGBH
TAYRYACACACACACACRYAYRY

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 22
Similarity score: 0.55938

Alignment:
-HVBDAGCGBGGGTGGCRDBDDDB
MKKTKKGTGTGTGTGTGTKKKTA-

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Dataset #: 1 Motif ID: 3 Motif name: C003

Original motif Reverse complement motif
Consensus sequence: GSCYCHSCCYVCCYCCCCCCSSCCCCCSSC Consensus sequence: GSSGGGGGSSGGGGGGKGGVMGGSHGKGSC

Best Matches for Motif ID 3 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 23
Similarity score: 0.0504417

Alignment:
-------VYWVVHCRCCACMCACGAHSBHH
GSCYCHSCCYVCCYCCCCCCSSCCCCCSSC-

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 23
Similarity score: 0.0508168

Alignment:
-------MHHHWHYTMCCHCCCACVAABVH
GSCYCHSCCYVCCYCCCCCCSSCCCCCSSC--

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 23
Similarity score: 0.0518257

Alignment:
BDDHVDKGCCACCCVCGCTDBVH-------
-GSSGGGGGSSGGGGGGKGGVMGGSHGKGSC

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 23
Similarity score: 0.05306

Alignment:
-------BADHBDHCGCCCMCGCAHHDBBV
GSCYCHSCCYVCCYCCCCCCSSCCCCCSSC

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 23
Similarity score: 0.0591633

Alignment:
-------BTBVTCVTGGGTGGTCMVVDVBB
GSSGGGGGSSGGGGGGKGGVMGGSHGKGSC-----

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Dataset #: 1 Motif ID: 4 Motif name: C004

Original motif Reverse complement motif
Consensus sequence: SSSSSCSSSSSCCSSSSCCSCSSSSSS Consensus sequence: SSSSSSGSGGSSSSGGSSSSSGSSSSS

Best Matches for Motif ID 4 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 23
Similarity score: 0.0378869

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV----
-SSSSSSGSGGSSSSGGSSSSSGSSSSS

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 23
Similarity score: 0.042097

Alignment:
----HVBDAGCGBGGGTGGCRDBDDDB
SSSSSCSSSSSCCSSSSCCSCSSSSSS----

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 23
Similarity score: 0.042858

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB----
--SSSSSSGSGGSSSSGGSSSSSGSSSSS

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 23
Similarity score: 0.0467324

Alignment:
BTBVTCVTGGGTGGTCMVVDVBB----
--SSSSSSGSGGSSSSGGSSSSSGSSSSS

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 23
Similarity score: 0.0486423

Alignment:
----ABBBBVVRGACCACCCACRDBBM
SSSSSCSSSSSCCSSSSCCSCSSSSSS---

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT

Dataset #: 1 Motif ID: 5 Motif name: C005

Original motif Reverse complement motif
Consensus sequence: TCTGTAGMCCAGGCTGGCCTYGW Consensus sequence: WCKAGGCCAGCCTGGYCTACAGA

Best Matches for Motif ID 5 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 23
Similarity score: 0.0620662

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
TCTGTAGMCCAGGCTGGCCTYGW

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 22
Similarity score: 0.553936

Alignment:
-DTVBDDRGACCACCCAGDWDGBH
TCTGTAGMCCAGGCTGGCCTYGW-

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 22
Similarity score: 0.556669

Alignment:
-BBBDVVRGACCACCCAVGABBAB
TCTGTAGMCCAGGCTGGCCTYGW-

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 22
Similarity score: 0.55849

Alignment:
HGDHVHKGACCACCCGGBGBGDB-
-WCKAGGCCAGCCTGGYCTACAGA

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.56544

Alignment:
DCATDBTGHGCATKMTTBRSWR-
WCKAGGCCAGCCTGGYCTACAGA

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR

Dataset #: 1 Motif ID: 6 Motif name: C006

Original motif Reverse complement motif
Consensus sequence: SWCACACASWCACACWSW Consensus sequence: WSWGTGTGWSTGTGTGWS

Best Matches for Motif ID 6 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0361661

Alignment:
VVYDDDCHCAVACAATTDBVAC
--SWCACACASWCACACWSW--

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0406554

Alignment:
BADHBDHCGCCCMCGCAHHDBBV
---SWCACACASWCACACWSW--

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 18
Similarity score: 0.040868

Alignment:
VYWVVHCRCCACMCACGAHSBHH
-SWCACACASWCACACWSW----

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0421858

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
WSWGTGTGWSTGTGTGWS-----

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0427432

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
---SWCACACASWCACACWSW--

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Dataset #: 1 Motif ID: 7 Motif name: C007

Original motif Reverse complement motif
Consensus sequence: KTTSTGAGTTCVAGGMCAGCCTS Consensus sequence: SAGGCTGYCCTVGAACTCASAAY

Best Matches for Motif ID 7 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 22
Similarity score: 0.0642913

Alignment:
VVYDDDCHCAVACAATTDBVAC-
-SAGGCTGYCCTVGAACTCASAAY

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 22
Similarity score: 0.0664801

Alignment:
-VCTBHBVCTTGGWTACVVVVVDB
KTTSTGAGTTCVAGGMCAGCCTS-

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 22
Similarity score: 0.0672967

Alignment:
-HDTBHHCCHTAGCAACVVDHHHH
SAGGCTGYCCTVGAACTCASAAY-

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 22
Similarity score: 0.0707277

Alignment:
-DVVTTVGTGGGHGGYAMHWHHHY
KTTSTGAGTTCVAGGMCAGCCTS-

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 21
Similarity score: 0.562337

Alignment:
VMYDHDGMCCHCCKBGVVAAVH--
--SAGGCTGYCCTVGAACTCASAAY

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH

Dataset #: 1 Motif ID: 8 Motif name: C008

Original motif Reverse complement motif
Consensus sequence: SSCCSSCCCCSSCCSS Consensus sequence: SSGGSSGGGGSSGGSS

Best Matches for Motif ID 8 (Highest to Lowest)

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0353177

Alignment:
HVBCCCCCCCCMHHHB
SSCCSSCCCCSSCCSS

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 16
Similarity score: 0.0353208

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
--SSCCSSCCCCSSCCSS----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 16
Similarity score: 0.0416492

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
-------SSGGSSGGGGSSGGSS

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 16
Similarity score: 0.0427346

Alignment:
DVVTTVGTGGGHGGYAMHWHHHY
SSGGSSGGGGSSGGSS-------

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0428588

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
-SSGGSSGGGGSSGGSS------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Dataset #: 1 Motif ID: 9 Motif name: C009

Original motif Reverse complement motif
Consensus sequence: ABGCCTTTAATCCCAGCACTHR Consensus sequence: MHAGTGCTGGGATTAAAGGCBT

Best Matches for Motif ID 9 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.0664875

Alignment:
DVVTTVGTGGGHGGYAMHWHHHY
MHAGTGCTGGGATTAAAGGCBT-

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY

Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 21
Similarity score: 0.56321

Alignment:
HBHDVBWGATHBTATCRVBHHH-
-ABGCCTTTAATCCCAGCACTHR

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 21
Similarity score: 0.565627

Alignment:
-BADHBDHCGCCCMCGCAHHDBBV
ABGCCTTTAATCCCAGCACTHR--

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 21
Similarity score: 0.56702

Alignment:
HVGVSAGGAGGGTCYHHHHYVH-
-ABGCCTTTAATCCCAGCACTHR

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 20
Similarity score: 1.06431

Alignment:
--BDBBVBVGTAWCCAAGVBHBAGB
MHAGTGCTGGGATTAAAGGCBT---

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Dataset #: 1 Motif ID: 10 Motif name: C010

Original motif Reverse complement motif
Consensus sequence: WWWAAAAWWAAAAAAAAAAWW Consensus sequence: WWTTTTTTTTTTWWTTTTWWW

Best Matches for Motif ID 10 (Highest to Lowest)

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 21
Similarity score: 0.0528064

Alignment:
HBHDVHDTCTTATCTHTDDHDV
WWTTTTTTTTTTWWTTTTWWW-

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 21
Similarity score: 0.0586273

Alignment:
HHBDHDDAACAATDRHHHHHBW
-WWWAAAAWWAAAAAAAAAAWW

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 21
Similarity score: 0.0606713

Alignment:
HHHBBMGATAVHATCWVVDHVH
-WWWAAAAWWAAAAAAAAAAWW

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 21
Similarity score: 0.0617422

Alignment:
VVYDDDCHCAVACAATTDBVAC
WWWAAAAWWAAAAAAAAAAWW-

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 21
Similarity score: 0.065491

Alignment:
HDTBHHCCHTAGCAACVVDHHHH
WWWAAAAWWAAAAAAAAAAWW--

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH

Dataset #: 1 Motif ID: 11 Motif name: C011

Original motif Reverse complement motif
Consensus sequence: KMGAGAKMGAGAGAGAKM Consensus sequence: RRTCTCTCTCRRTCTCRR

Best Matches for Motif ID 11 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.0404807

Alignment:
VVYDDDCHCAVACAATTDBVAC
---RRTCTCTCTCRRTCTCRR-

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.0471227

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
----RRTCTCTCTCRRTCTCRR-

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0474739

Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
RRTCTCTCTCRRTCTCRR-----

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0475854

Alignment:
HDBABCGBKRGYGGCGMSBHAK
--KMGAGAKMGAGAGAGAKM--

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0500023

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
---KMGAGAKMGAGAGAGAKM--

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Dataset #: 1 Motif ID: 12 Motif name: C012

Original motif Reverse complement motif
Consensus sequence: MKAGAGMKAGAGAGAGAKM Consensus sequence: YRTCTCTCTCTRYCTCTRR

Best Matches for Motif ID 12 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 19
Similarity score: 0.0419739

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-MKAGAGMKAGAGAGAGAKM--

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 19
Similarity score: 0.0446412

Alignment:
HBHDVHDTCTTATCTHTDDHDV
YRTCTCTCTCTRYCTCTRR---

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 19
Similarity score: 0.0455704

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
--MKAGAGMKAGAGAGAGAKM--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 19
Similarity score: 0.0502954

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
--MKAGAGMKAGAGAGAGAKM--

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 19
Similarity score: 0.0510365

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
--MKAGAGMKAGAGAGAGAKM--

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Dataset #: 1 Motif ID: 13 Motif name: C013

Original motif Reverse complement motif
Consensus sequence: WVCTGGAACTCACTHTGTAGACCAGGM Consensus sequence: YCCTGGTCTACADAGTGAGTTCCAGVW

Best Matches for Motif ID 13 (Highest to Lowest)

Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 22
Similarity score: 0.0456555

Alignment:
-----MWSMBAARRATGCDCABHATGD
WVCTGGAACTCACTHTGTAGACCAGGM-----

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 22
Similarity score: 0.0503111

Alignment:
VVYDDDCHCAVACAATTDBVAC-----
-----YCCTGGTCTACADAGTGAGTTCCAGVW

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00526
Motif name: Foxn1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 22
Similarity score: 0.0518427

Alignment:
-----WHVBVVMACGCGCGTCDYHWDH
WVCTGGAACTCACTHTGTAGACCAGGM-----

Original motif Reverse complement motif
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Consensus sequence: HDWHMHGACGCGCGTRBVVBHW

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 21
Similarity score: 0.546981

Alignment:
------BHCBCBCCGGGTGGTCYHVHDCH
WVCTGGAACTCACTHTGTAGACCAGGM------

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 21
Similarity score: 0.549369

Alignment:
------BTBVTCVTGGGTGGTCMVVDVBB
YCCTGGTCTACADAGTGAGTTCCAGVW--

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Dataset #: 1 Motif ID: 14 Motif name: C014

Original motif Reverse complement motif
Consensus sequence: YSGGAGGCAGAGGCMS Consensus sequence: SYGCCTCTGCCTCCSK

Best Matches for Motif ID 14 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 16
Similarity score: 0.0331356

Alignment:
VHYTCCDWCCGCGTCMMTHWHV
--SYGCCTCTGCCTCCSK----

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Motif ID: UP00068
Motif name: Eomes_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.034812

Alignment:
VVBVCKACACCTHVBV
SYGCCTCTGCCTCCSK

Original motif Reverse complement motif
Consensus sequence: VBVDAGGTGTYGVBBV Consensus sequence: VVBVCKACACCTHVBV

Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 16
Similarity score: 0.034835

Alignment:
HVGVSAGGAGGGTCYHHHHYVH
YSGGAGGCAGAGGCMS------

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.034915

Alignment:
BDHHMCGCCCCCTHVBB
-SYGCCTCTGCCTCCSK

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Motif ID: UP00031
Motif name: Zbtb3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0350751

Alignment:
BBBAVTGCAGTGBBVDD
-SYGCCTCTGCCTCCSK

Original motif Reverse complement motif
Consensus sequence: DDBBBCACTGCABTBBB Consensus sequence: BBBAVTGCAGTGBBVDD

Dataset #: 1 Motif ID: 15 Motif name: C015

Original motif Reverse complement motif
Consensus sequence: DVAGCCWKGGCTACAVAGCK Consensus sequence: RGCTVTGTAGCCYWGGCTVD

Best Matches for Motif ID 15 (Highest to Lowest)

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 20
Similarity score: 0.0486537

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
--DVAGCCWKGGCTACAVAGCK-

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 20
Similarity score: 0.0536153

Alignment:
HDTBHHCCHTAGCAACVVDHHHH
--DVAGCCWKGGCTACAVAGCK-

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 20
Similarity score: 0.0624325

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-RGCTVTGTAGCCYWGGCTVD--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 20
Similarity score: 0.0635845

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
--RGCTVTGTAGCCYWGGCTVD

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH

Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 20
Similarity score: 0.0640763

Alignment:
CVHBSCGGGTGGTCMHVHHCDH
--RGCTVTGTAGCCYWGGCTVD

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH

Dataset #: 1 Motif ID: 16 Motif name: C016

Original motif Reverse complement motif
Consensus sequence: HWAAWAAAHWAAMAWAMAAWW Consensus sequence: WWTTYTWTYTTWDTTTWTTWH

Best Matches for Motif ID 16 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 21
Similarity score: 0.0445695

Alignment:
HHBDHDDAACAATDRHHHHHBW
-HWAAWAAAHWAAMAWAMAAWW

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 21
Similarity score: 0.0472803

Alignment:
HBHDVHDTCTTATCTHTDDHDV
WWTTYTWTYTTWDTTTWTTWH-

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 21
Similarity score: 0.0518988

Alignment:
HBHDVBWGATHBTATCRVBHHH
-HWAAWAAAHWAAMAWAMAAWW

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 21
Similarity score: 0.0523549

Alignment:
VVYDDDCHCAVACAATTDBVAC
HWAAWAAAHWAAMAWAMAAWW-

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 21
Similarity score: 0.0599775

Alignment:
VYWVVHCRCCACMCACGAHSBHH
-HWAAWAAAHWAAMAWAMAAWW-

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Dataset #: 1 Motif ID: 17 Motif name: C017

Original motif Reverse complement motif
Consensus sequence: WSWGAGASWSAGAGASWS Consensus sequence: SWSTCTCTSWSTCTCWSW

Best Matches for Motif ID 17 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0370092

Alignment:
VDWDARRGACGCGGWHGGAKHV
--WSWGAGASWSAGAGASWS--

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0399153

Alignment:
VVYDDDCHCAVACAATTDBVAC
--SWSTCTCTSWSTCTCWSW--

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 18
Similarity score: 0.0422644

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
WSWGAGASWSAGAGASWS-----

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0425861

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
----WSWGAGASWSAGAGASWS-

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0439386

Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
--WSWGAGASWSAGAGASWS---

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Dataset #: 1 Motif ID: 18 Motif name: C018

Original motif Reverse complement motif
Consensus sequence: AAMYAAAAAAAHA Consensus sequence: THTTTTTTTMYTT

Best Matches for Motif ID 18 (Highest to Lowest)

Motif ID: UP00028
Motif name: Tcfap2e_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0145388

Alignment:
HDCDBRAAAAAADD
-AAMYAAAAAAAHA

Original motif Reverse complement motif
Consensus sequence: HDCDBRAAAAAADD Consensus sequence: DDTTTTTTMBDGDH

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0166921

Alignment:
VBDDAAAAAAAAMVBHH
----AAMYAAAAAAAHA

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0192633

Alignment:
ADDDYAWAACAAMAHH
-AAMYAAAAAAAHA--

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT

Motif ID: UP00134
Motif name: Hoxb13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0204511

Alignment:
VRHCCAATAAAAWHHV
-AAMYAAAAAAAHA--

Original motif Reverse complement motif
Consensus sequence: VRHCCAATAAAAWHHV Consensus sequence: VDHWTTTTATTGGDKB

Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0217367

Alignment:
HDHRTAAACAAAHDDD
-AAMYAAAAAAAHA--

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH

Dataset #: 1 Motif ID: 19 Motif name: C019

Original motif Reverse complement motif
Consensus sequence: MWYCCCAGCACTTGGGAGGCAG Consensus sequence: CTGCCTCCCAAGTGCTGGGMWR

Best Matches for Motif ID 19 (Highest to Lowest)

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.041956

Alignment:
YDYBDHTMCACGTGGADDBMDGT
MWYCCCAGCACTTGGGAGGCAG-

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.0441925

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
CTGCCTCCCAAGTGCTGGGMWR-

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.0552063

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
MWYCCCAGCACTTGGGAGGCAG

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.0596824

Alignment:
HTBVVVDGGACCACCCRGRDBG
MWYCCCAGCACTTGGGAGGCAG

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH

Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.0599404

Alignment:
DDHBHBSTCACGTGAHBBDHHM
CTGCCTCCCAAGTGCTGGGMWR

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM

Dataset #: 1 Motif ID: 20 Motif name: C020

Original motif Reverse complement motif
Consensus sequence: BSCVCCSCCVCSCCCACS Consensus sequence: SGTGGGSGVGGSGGVGSB

Best Matches for Motif ID 20 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0350167

Alignment:
HDBABCGBKRGYGGCGMSBHAK
SGTGGGSGVGGSGGVGSB----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 18
Similarity score: 0.0412841

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
-SGTGGGSGVGGSGGVGSB----

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0415056

Alignment:
BADHBDHCGCCCMCGCAHHDBBV
--BSCVCCSCCVCSCCCACS---

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 18
Similarity score: 0.0438926

Alignment:
VYWVVHCRCCACMCACGAHSBHH
-BSCVCCSCCVCSCCCACS----

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 18
Similarity score: 0.0475246

Alignment:
MHHHWHYTMCCHCCCACVAABVH
BSCVCCSCCVCSCCCACS-----

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY

Dataset #: 1 Motif ID: 21 Motif name: C021

Original motif Reverse complement motif
Consensus sequence: MKAGMVAGAKAGMK Consensus sequence: RYCTRTCTVYCTRY

Best Matches for Motif ID 21 (Highest to Lowest)

Motif ID: UP00101
Motif name: Sox12_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0269394

Alignment:
HDTMCTTTGTSTVDBB
--RYCTRTCTVYCTRY

Original motif Reverse complement motif
Consensus sequence: VVDBASACAAAGRADH Consensus sequence: HDTMCTTTGTSTVDBB

Motif ID: >UP00011
Motif name: Irf6_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0331495

Alignment:
VBBACTCYCGGKHDV
-MKAGMVAGAKAGMK

Original motif Reverse complement motif
Consensus sequence: VBBACTCYCGGKHDV Consensus sequence: VDDRCCGMGAGTBBB

Motif ID: UP00040
Motif name: Irf5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0341976

Alignment:
BHDAHCGAGARTHBV
-MKAGMVAGAKAGMK

Original motif Reverse complement motif
Consensus sequence: BHDAHCGAGARTHBV Consensus sequence: VBHAKTCTCGHTHHV

Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0359613

Alignment:
HVDDVCAGATGKYHBBV
MKAGMVAGAKAGMK---

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0368158

Alignment:
HBGYGTGTGTGCVRVD
--RYCTRTCTVYCTRY

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD

Dataset #: 1 Motif ID: 22 Motif name: C022

Original motif Reverse complement motif
Consensus sequence: BGCCYCBGSCYCCCSVS Consensus sequence: SVSGGGKGSCBGMGGCV

Best Matches for Motif ID 22 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 17
Similarity score: 0.0352062

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
BGCCYCBGSCYCCCSVS-----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0384374

Alignment:
BHHBHCCGCCCCDHHHH
BGCCYCBGSCYCCCSVS

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 17
Similarity score: 0.0394824

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
------SVSGGGKGSCBGMGGCV

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0470502

Alignment:
BDHHMCGCCCCCTHVBB
BGCCYCBGSCYCCCSVS

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 17
Similarity score: 0.0477827

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
------SVSGGGKGSCBGMGGCV

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Dataset #: 1 Motif ID: 23 Motif name: C023

Original motif Reverse complement motif
Consensus sequence: SSCCSCBHCSCCSS Consensus sequence: SSGGSGDBGSGGSS

Best Matches for Motif ID 23 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0233667

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
---SSCCSCBHCSCCSS-----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0308308

Alignment:
HVDVGGGHGGGGDBHB
SSGGSGDBGSGGSS--

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB

Motif ID: UP00013
Motif name: Gabpa_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0321962

Alignment:
DBVVDRSGGAWKVHKG
--SSGGSGDBGSGGSS

Original motif Reverse complement motif
Consensus sequence: CYDBYWTCCSMHBVVH Consensus sequence: DBVVDRSGGAWKVHKG

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0322741

Alignment:
GKRGGGGGGGGGGBD
-SSGGSGDBGSGGSS

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0324541

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-------SSCCSCBHCSCCSS--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Dataset #: 1 Motif ID: 24 Motif name: C024

Original motif Reverse complement motif
Consensus sequence: TDAAYRWAAAAWYDAAHA Consensus sequence: THTTDMWTTTTWKMTTDA

Best Matches for Motif ID 24 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0410905

Alignment:
WBHHHHHMDATTGTTHDHDVHH
--THTTDMWTTTTWKMTTDA--

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0441479

Alignment:
VVYDDDCHCAVACAATTDBVAC
----TDAAYRWAAAAWYDAAHA

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0508186

Alignment:
HBHDVHDTCTTATCTHTDDHDV
THTTDMWTTTTWKMTTDA----

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0546986

Alignment:
HHHBBMGATAVHATCWVVDHVH
--TDAAYRWAAAAWYDAAHA--

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH

Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0553

Alignment:
MWSMBAARRATGCDCABHATGD
TDAAYRWAAAAWYDAAHA----

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR

Dataset #: 1 Motif ID: 25 Motif name: C025

Original motif Reverse complement motif
Consensus sequence: KMGAKAGAGMGAKM Consensus sequence: RRTCRCTCTRTCRR

Best Matches for Motif ID 25 (Highest to Lowest)

Motif ID: UP00080
Motif name: Gata5_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.036512

Alignment:
VVBHRAGATATCWDHBB
RRTCRCTCTRTCRR---

Original motif Reverse complement motif
Consensus sequence: VVBHRAGATATCWDHBB Consensus sequence: VVHHWGATATCTMHBBV

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0377627

Alignment:
VVYDDDCHCAVACAATTDBVAC
-----RRTCRCTCTRTCRR---

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 14
Similarity score: 0.0384238

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
---------KMGAKAGAGMGAKM

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Motif ID: UP00100
Motif name: Gata6_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0394703

Alignment:
HKCBSCGATATCGVBBC
RRTCRCTCTRTCRR---

Original motif Reverse complement motif
Consensus sequence: GBBVCGATATCGSVGYD Consensus sequence: HKCBSCGATATCGVBBC

Motif ID: UP00040
Motif name: Irf5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0405383

Alignment:
BHDAHCGAGARTHBV
KMGAKAGAGMGAKM-

Original motif Reverse complement motif
Consensus sequence: BHDAHCGAGARTHBV Consensus sequence: VBHAKTCTCGHTHHV

Dataset #: 1 Motif ID: 26 Motif name: C026

Original motif Reverse complement motif
Consensus sequence: KMGAGAKMKMGAGAKM Consensus sequence: RRTCTCRRRRTCTCRR

Best Matches for Motif ID 26 (Highest to Lowest)

Motif ID: UP00095
Motif name: Zfp691_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0454643

Alignment:
VHBDDAGGAGTCWBBTD
RRTCTCRRRRTCTCRR-

Original motif Reverse complement motif
Consensus sequence: DABBWGACTCCTHDVHV Consensus sequence: VHBDDAGGAGTCWBBTD

Motif ID: UP00037
Motif name: Zfp105_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0459821

Alignment:
HDMAVTTATTGARVCMH
KMGAGAKMKMGAGAKM-

Original motif Reverse complement motif
Consensus sequence: DYGVKTCAATAABTYDD Consensus sequence: HDMAVTTATTGARVCMH

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 16
Similarity score: 0.0470026

Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
------RRTCTCRRRRTCTCRR-

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Motif ID: UP00100
Motif name: Gata6_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0472484

Alignment:
HKCBSCGATATCGVBBC
RRTCTCRRRRTCTCRR-

Original motif Reverse complement motif
Consensus sequence: GBBVCGATATCGSVGYD Consensus sequence: HKCBSCGATATCGVBBC

Motif ID: UP00080
Motif name: Gata5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0489582

Alignment:
VVHHWGATATCTMHBBV
-KMGAGAKMKMGAGAKM

Original motif Reverse complement motif
Consensus sequence: VVBHRAGATATCWDHBB Consensus sequence: VVHHWGATATCTMHBBV

Dataset #: 1 Motif ID: 27 Motif name: C027

Original motif Reverse complement motif
Consensus sequence: MRCAGRGAAACCCTGTCTYDW Consensus sequence: WHKAGACAGGGTTTCMCTGKY

Best Matches for Motif ID 27 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 21
Similarity score: 0.0379369

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
-WHKAGACAGGGTTTCMCTGKY-

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 21
Similarity score: 0.0428251

Alignment:
HGDHVHKGACCACCCGGBGBGDB
--MRCAGRGAAACCCTGTCTYDW

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 21
Similarity score: 0.0432221

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
-WHKAGACAGGGTTTCMCTGKY-

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 21
Similarity score: 0.0454185

Alignment:
DVMHHDHKGACCCTCCTSVCBH
MRCAGRGAAACCCTGTCTYDW-

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH

Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 21
Similarity score: 0.0491194

Alignment:
HBHDVBWGATHBTATCRVBHHH
-WHKAGACAGGGTTTCMCTGKY

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH

Dataset #: 1 Motif ID: 28 Motif name: C028

Original motif Reverse complement motif
Consensus sequence: BVGASSCASAGVSABV Consensus sequence: VBTSVCTSTGSSTCVB

Best Matches for Motif ID 28 (Highest to Lowest)

Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0351716

Alignment:
HDHDDCCAGACABBHVH
BVGASSCASAGVSABV-

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 16
Similarity score: 0.0393573

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
---BVGASSCASAGVSABV---

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00013
Motif name: Gabpa_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0397911

Alignment:
CYDBYWTCCSMHBVVH
VBTSVCTSTGSSTCVB

Original motif Reverse complement motif
Consensus sequence: CYDBYWTCCSMHBVVH Consensus sequence: DBVVDRSGGAWKVHKG

Motif ID: UP00011
Motif name: Irf6_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0399886

Alignment:
DHDBTKGTTTCGHTHDD
-VBTSVCTSTGSSTCVB

Original motif Reverse complement motif
Consensus sequence: HDDAHCGAAACYAVDDD Consensus sequence: DHDBTKGTTTCGHTHDD

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 16
Similarity score: 0.0408182

Alignment:
GTVBDAATTGTVTGHGDDHKVB
--VBTSVCTSTGSSTCVB----

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Dataset #: 1 Motif ID: 29 Motif name: C029

Original motif Reverse complement motif
Consensus sequence: AAWWWAAAAWWWAA Consensus sequence: TTWWWTTTTWWWTT

Best Matches for Motif ID 29 (Highest to Lowest)

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0387466

Alignment:
HDDDATTTTATTKVRDB
TTWWWTTTTWWWTT---

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB

Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0414949

Alignment:
DDHBTTTTTTTTHDAVH
TTWWWTTTTWWWTT---

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0415039

Alignment:
VBDDAAAAAAAAMVBHH
---AAWWWAAAAWWWAA

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0434847

Alignment:
ADDDYAWAACAAMAHH
AAWWWAAAAWWWAA--

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT

Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.045306

Alignment:
HARTHAATTAWTAVDHD
-AAWWWAAAAWWWAA--

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH

Dataset #: 1 Motif ID: 30 Motif name: C030

Original motif Reverse complement motif
Consensus sequence: WYAAAAAMAAAAAAAAWAM Consensus sequence: YTWTTTTTTTTYTTTTTMW

Best Matches for Motif ID 30 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 19
Similarity score: 0.0369294

Alignment:
HHBDHDDAACAATDRHHHHHBW
--WYAAAAAMAAAAAAAAWAM-

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 19
Similarity score: 0.0399523

Alignment:
GTVBDAATTGTVTGHGDDHKVB
---YTWTTTTTTTTYTTTTTMW

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 19
Similarity score: 0.0431733

Alignment:
HBHDVHDTCTTATCTHTDDHDV
--YTWTTTTTTTTYTTTTTMW-

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 19
Similarity score: 0.0503657

Alignment:
HHHBBMGATAVHATCWVVDHVH
---WYAAAAAMAAAAAAAAWAM

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 19
Similarity score: 0.0507131

Alignment:
VYWVVHCRCCACMCACGAHSBHH
--WYAAAAAMAAAAAAAAWAM--

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Dataset #: 1 Motif ID: 31 Motif name: C031

Original motif Reverse complement motif
Consensus sequence: WHAAAMRWWYAAAMAWW Consensus sequence: WWTYTTTMWWKYTTTHW

Best Matches for Motif ID 31 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0458825

Alignment:
VBDDAAAAAAAAMVBHH
WHAAAMRWWYAAAMAWW

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0488194

Alignment:
DDHBTTTTTTTTHDAVH
WWTYTTTMWWKYTTTHW

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 17
Similarity score: 0.0501404

Alignment:
WBHHHHHMDATTGTTHDHDVHH
WWTYTTTMWWKYTTTHW-----

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0539477

Alignment:
DHDBTAWTAATTHAKTH
WWTYTTTMWWKYTTTHW

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH

Motif ID: UP00078
Motif name: Arid3a_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0545289

Alignment:
DHHYTTTAATTAAHBBV
WWTYTTTMWWKYTTTHW

Original motif Reverse complement motif
Consensus sequence: VBBHTTAATTAAAMHHH Consensus sequence: DHHYTTTAATTAAHBBV

Dataset #: 1 Motif ID: 32 Motif name: C032

Original motif Reverse complement motif
Consensus sequence: HWAAWYDAAAMWRWAMWR Consensus sequence: KWYTWKWYTTTDMWTTWH

Best Matches for Motif ID 32 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0461423

Alignment:
WBHHHHHMDATTGTTHDHDVHH
---KWYTWKWYTTTDMWTTWH-

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.050828

Alignment:
GTVBDAATTGTVTGHGDDHKVB
---HWAAWYDAAAMWRWAMWR-

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 18
Similarity score: 0.0516978

Alignment:
HBHDVHDTCTTATCTHTDDHDV
-KWYTWKWYTTTDMWTTWH---

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0517018

Alignment:
HBHDVBWGATHBTATCRVBHHH
----HWAAWYDAAAMWRWAMWR

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0667428

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
--HWAAWYDAAAMWRWAMWR---

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM

Dataset #: 1 Motif ID: 33 Motif name: C033

Original motif Reverse complement motif
Consensus sequence: WWAAWYAAAMRWAAAW Consensus sequence: WTTTWKYTTTMWTTWW

Best Matches for Motif ID 33 (Highest to Lowest)

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0226221

Alignment:
VVVWTTGTTTAMATTWD
-WTTTWKYTTTMWTTWW

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0262386

Alignment:
BDVTTTKTTTACWTWHH
-WTTTWKYTTTMWTTWW

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH

Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0287316

Alignment:
BBVTTTGTTTACATTDD
-WTTTWKYTTTMWTTWW

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD

Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0296838

Alignment:
ADDDYAWAACAAMAHH
WWAAWYAAAMRWAAAW

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0300495

Alignment:
VBDDAAAAAAAAMVBHH
-WWAAWYAAAMRWAAAW

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Dataset #: 1 Motif ID: 34 Motif name: C034

Original motif Reverse complement motif
Consensus sequence: SCACTGSGGAGSMAGAGS Consensus sequence: SCTCTRSCTCCSCAGTGS

Best Matches for Motif ID 34 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0434619

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
---SCACTGSGGAGSMAGAGS--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0468771

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
--SCTCTRSCTCCSCAGTGS--

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0486672

Alignment:
BADHBDHCGCCCMCGCAHHDBBV
---SCTCTRSCTCCSCAGTGS--

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0500626

Alignment:
VYWVVHCRCCACMCACGAHSBHH
--SCTCTRSCTCCSCAGTGS---

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0522233

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
-----SCTCTRSCTCCSCAGTGS

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Dataset #: 1 Motif ID: 35 Motif name: C035

Original motif Reverse complement motif
Consensus sequence: WWACCYKGTCTMRAAAWW Consensus sequence: WWTTTMYAGACRKGGTWW

Best Matches for Motif ID 35 (Highest to Lowest)

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0424694

Alignment:
HBHDVHDTCTTATCTHTDDHDV
----WWACCYKGTCTMRAAAWW

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0529352

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
---WWTTTMYAGACRKGGTWW--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 18
Similarity score: 0.0530184

Alignment:
YDYBDHTMCACGTGGADDBMDGT
WWTTTMYAGACRKGGTWW-----

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0572016

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
WWACCYKGTCTMRAAAWW-----

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.0574877

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
----WWTTTMYAGACRKGGTWW-

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Dataset #: 1 Motif ID: 36 Motif name: C036

Original motif Reverse complement motif
Consensus sequence: MKAGMKMGAGAKMKAGMK Consensus sequence: RRCTRRRTCTCRRRCTRY

Best Matches for Motif ID 36 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0426031

Alignment:
HDBABCGBKRGYGGCGMSBHAK
----RRCTRRRTCTCRRRCTRY

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0454827

Alignment:
GTVBDAATTGTVTGHGDDHKVB
----RRCTRRRTCTCRRRCTRY

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00526
Motif name: Foxn1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0473662

Alignment:
WHVBVVMACGCGCGTCDYHWDH
RRCTRRRTCTCRRRCTRY----

Original motif Reverse complement motif
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Consensus sequence: HDWHMHGACGCGCGTRBVVBHW

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0480971

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
--MKAGMKMGAGAKMKAGMK---

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0493902

Alignment:
VDWDARRGACGCGGWHGGAKHV
-RRCTRRRTCTCRRRCTRY---

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Dataset #: 1 Motif ID: 37 Motif name: C037

Original motif Reverse complement motif
Consensus sequence: SVCCGBCMCCSYCMCCVB Consensus sequence: BVGGYGKSGGYGBCGGVS

Best Matches for Motif ID 37 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 18
Similarity score: 0.0265916

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-BVGGYGKSGGYGBCGGVS---

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0363116

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
--BVGGYGKSGGYGBCGGVS---

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0376504

Alignment:
VYWVVHCRCCACMCACGAHSBHH
---SVCCGBCMCCSYCMCCVB--

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0409627

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
----BVGGYGKSGGYGBCGGVS-

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0454859

Alignment:
VMYDHDGMCCHCCKBGVVAAVH
----BVGGYGKSGGYGBCGGVS

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH

Dataset #: 1 Motif ID: 38 Motif name: C038

Original motif Reverse complement motif
Consensus sequence: RRRATCCDSCTGCCTYT Consensus sequence: AKAGGCAGSDGGATKKK

Best Matches for Motif ID 38 (Highest to Lowest)

Motif ID: UP00528
Motif name: Foxm1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0332889

Alignment:
VHVRCAYGATGCATCDTVVADTH
------AKAGGCAGSDGGATKKK

Original motif Reverse complement motif
Consensus sequence: HADTBVADGATGCATCMTGMVHB Consensus sequence: VHVRCAYGATGCATCDTVVADTH

Motif ID: UP00022
Motif name: Zfp740_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0415981

Alignment:
HVKDCCGGGGGGWADDD
AKAGGCAGSDGGATKKK

Original motif Reverse complement motif
Consensus sequence: DDDTWCCCCCCGGDRVH Consensus sequence: HVKDCCGGGGGGWADDD

Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0467833

Alignment:
HVDDVCAGATGKYHBBV
AKAGGCAGSDGGATKKK

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 17
Similarity score: 0.0476081

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
---RRRATCCDSCTGCCTYT---

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM

Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 17
Similarity score: 0.0482666

Alignment:
DDRMHBACGCGYGCGTDGBBDB
-RRRATCCDSCTGCCTYT----

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD

Dataset #: 1 Motif ID: 39 Motif name: C039

Original motif Reverse complement motif
Consensus sequence: SMAGRSCAGSSYGGBS Consensus sequence: SBCCKSSCTGSMCTRS

Best Matches for Motif ID 39 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 16
Similarity score: 0.0381161

Alignment:
HTBVVVDGGACCACCCRGRDBG
-----SMAGRSCAGSSYGGBS-

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 16
Similarity score: 0.0406922

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
---SBCCKSSCTGSMCTRS----

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0416812

Alignment:
HVHBVTGTCTGGDDHDD
-SBCCKSSCTGSMCTRS

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD

Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0417968

Alignment:
HDGHHBHRGACCACCCGSVDVG
-----SMAGRSCAGSSYGGBS-

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH

Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 16
Similarity score: 0.0424976

Alignment:
YBVDMGTGGGTGGTCKVVBVBBT
--SBCCKSSCTGSMCTRS-----

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT

Dataset #: 1 Motif ID: 40 Motif name: C040

Original motif Reverse complement motif
Consensus sequence: RSTGASYTCMARSYCAGY Consensus sequence: KCTGMSKTYGAMSTCASM

Best Matches for Motif ID 40 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 18
Similarity score: 0.0426851

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
RSTGASYTCMARSYCAGY----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0443113

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
-----KCTGMSKTYGAMSTCASM

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0450319

Alignment:
DTVBDDRGACCACCCAGDWDGBH
----RSTGASYTCMARSYCAGY-

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 18
Similarity score: 0.0455665

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
KCTGMSKTYGAMSTCASM-----

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0457782

Alignment:
VYWVVHCRCCACMCACGAHSBHH
---RSTGASYTCMARSYCAGY--

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Dataset #: 1 Motif ID: 41 Motif name: C041

Original motif Reverse complement motif
Consensus sequence: CSGAGGCMKAGGCASS Consensus sequence: SSTGCCTYRGCCTCSG

Best Matches for Motif ID 41 (Highest to Lowest)

Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 16
Similarity score: 0.0297471

Alignment:
HDTBHHCCHTAGCAACVVDHHHH
--SSTGCCTYRGCCTCSG-----

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0308327

Alignment:
VHYTCCDWCCGCGTCMMTHWHV
-SSTGCCTYRGCCTCSG-----

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 16
Similarity score: 0.0317547

Alignment:
DBBVDDDRTRGCGTCBBYTHGA
-SSTGCCTYRGCCTCSG-----

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0317742

Alignment:
DHHDGGGCGRGGKHBH
CSGAGGCMKAGGCASS

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0321641

Alignment:
BHVDCCCCDCCCBDBH
CSGAGGCMKAGGCASS

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB

Dataset #: 1 Motif ID: 42 Motif name: C042

Original motif Reverse complement motif
Consensus sequence: WGTCCKRGAACYMACTCW Consensus sequence: WGAGTRMGTTCKRGGACW

Best Matches for Motif ID 42 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0266184

Alignment:
YBVDMGTGGGTGGTCKVVBVBBT
----WGAGTRMGTTCKRGGACW-

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT

Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0330025

Alignment:
HDTBHHCCHTAGCAACVVDHHHH
----WGTCCKRGAACYMACTCW-

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 18
Similarity score: 0.03417

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-WGTCCKRGAACYMACTCW----

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0347873

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
----WGAGTRMGTTCKRGGACW-

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.035399

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
----WGTCCKRGAACYMACTCW-

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Dataset #: 1 Motif ID: 43 Motif name: C043

Original motif Reverse complement motif
Consensus sequence: WWAAWAAAAAARAATW Consensus sequence: WATTMTTTTTTWTTWW

Best Matches for Motif ID 43 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0232401

Alignment:
VBDDAAAAAAAAMVBHH
-WWAAWAAAAAARAATW

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00054
Motif name: Tcf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0288687

Alignment:
BHHASATCAAAGGAHHH
-WWAAWAAAAAARAATW

Original motif Reverse complement motif
Consensus sequence: BHHASATCAAAGGAHHH Consensus sequence: HHHTCCTTTGATSTHHV

Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0296812

Alignment:
DHDBTAWTAATTHAKTH
-WATTMTTTTTTWTTWW

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH

Motif ID: UP00051
Motif name: Sox8_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0320831

Alignment:
DDATBWATTGTTHHDDD
-WATTMTTTTTTWTTWW

Original motif Reverse complement motif
Consensus sequence: DDATBWATTGTTHHDDD Consensus sequence: DDDHDAACAATWBATDD

Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0327018

Alignment:
HDTYTTGTTWTKDDDT
WATTMTTTTTTWTTWW

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT

Dataset #: 1 Motif ID: 44 Motif name: C044

Original motif Reverse complement motif
Consensus sequence: BVAGAGGCAGRVSGATB Consensus sequence: BATCSVMCTGCCTCTVB

Best Matches for Motif ID 44 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 17
Similarity score: 0.0438724

Alignment:
VDWDARRGACGCGGWHGGAKHV
----BVAGAGGCAGRVSGATB-

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 17
Similarity score: 0.046578

Alignment:
VMYDHDGMCCHCCKBGVVAAVH
-BATCSVMCTGCCTCTVB----

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH

Motif ID: UP00031
Motif name: Zbtb3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.046833

Alignment:
DDBBBCACTGCABTBBB
BATCSVMCTGCCTCTVB

Original motif Reverse complement motif
Consensus sequence: DDBBBCACTGCABTBBB Consensus sequence: BBBAVTGCAGTGBBVDD

Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 17
Similarity score: 0.049551

Alignment:
TCDAMVBGACGCMAKDDDVBBD
----BVAGAGGCAGRVSGATB-

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD

Motif ID: UP00095
Motif name: Zfp691_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0496109

Alignment:
DABBWGACTCCTHDVHV
BATCSVMCTGCCTCTVB

Original motif Reverse complement motif
Consensus sequence: DABBWGACTCCTHDVHV Consensus sequence: VHBDDAGGAGTCWBBTD

Dataset #: 1 Motif ID: 45 Motif name: C045

Original motif Reverse complement motif
Consensus sequence: RYAGMCMKGKCTRY Consensus sequence: MKAGYCYRGRCTKK

Best Matches for Motif ID 45 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0303562

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-RYAGMCMKGKCTRY-------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00086
Motif name: Irf3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0355506

Alignment:
DDAGAADGGDSCDV
RYAGMCMKGKCTRY

Original motif Reverse complement motif
Consensus sequence: DDAGAADGGDSCDV Consensus sequence: BHGSDCCDTTCTHH

Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0391606

Alignment:
HVDVGGGHGGGGDBHB
-MKAGYCYRGRCTKK-

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB

Motif ID: UP00084
Motif name: Gmeb1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0399089

Alignment:
BVVDVRYACGTRYVBHB
--MKAGYCYRGRCTKK-

Original motif Reverse complement motif
Consensus sequence: BHBBKKACGTMMVDBVB Consensus sequence: BVVDVRYACGTRYVBHB

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 14
Similarity score: 0.0406925

Alignment:
GTVBDAATTGTVTGHGDDHKVB
------MKAGYCYRGRCTKK--

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Dataset #: 1 Motif ID: 46 Motif name: C046

Original motif Reverse complement motif
Consensus sequence: KSTGKCCTRGAACWSM Consensus sequence: YSWGTTCKAGGYCASY

Best Matches for Motif ID 46 (Highest to Lowest)

Motif ID: UP00043
Motif name: Bcl6b_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.033819

Alignment:
DCTTTCKAGGAATHHV
KSTGKCCTRGAACWSM

Original motif Reverse complement motif
Consensus sequence: DCTTTCKAGGAATHHV Consensus sequence: VHHATTCCTYGAAAGD

Motif ID: UP00414
Motif name: Ets1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0383006

Alignment:
BDDDHACCGGAARTVDD
KSTGKCCTRGAACWSM-

Original motif Reverse complement motif
Consensus sequence: BDDDHACCGGAARTVDD Consensus sequence: DDBAMTTCCGGTDHDHB

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 16
Similarity score: 0.0428174

Alignment:
DVVTTVGTGGGHGGYAMHWHHHY
---YSWGTTCKAGGYCASY----

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 16
Similarity score: 0.0436721

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
--YSWGTTCKAGGYCASY-----

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00213
Motif name: Hoxa9
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0441221

Alignment:
WDTAWTTTWATGKCCGD
-YSWGTTCKAGGYCASY

Original motif Reverse complement motif
Consensus sequence: DCGGYCATWAAAWTADW Consensus sequence: WDTAWTTTWATGKCCGD

Dataset #: 1 Motif ID: 47 Motif name: C047

Original motif Reverse complement motif
Consensus sequence: TSGAAMTCACTMKGTASA Consensus sequence: TSTACRYAGTGAYTTCSA

Best Matches for Motif ID 47 (Highest to Lowest)

Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0369958

Alignment:
DCATDBTGHGCATKMTTBRSWR
---TSGAAMTCACTMKGTASA-

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR

Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.045149

Alignment:
TCDAMVBGACGCMAKDDDVBBD
----TSTACRYAGTGAYTTCSA

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0467709

Alignment:
VVYDDDCHCAVACAATTDBVAC
--TSTACRYAGTGAYTTCSA--

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.047063

Alignment:
DVTTVVCVYGGHGGYCHHDMYB
--TSTACRYAGTGAYTTCSA--

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 18
Similarity score: 0.0479788

Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
-----TSGAAMTCACTMKGTASA

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Dataset #: 1 Motif ID: 48 Motif name: C048

Original motif Reverse complement motif
Consensus sequence: SGAGGCWSWGGCAGSC Consensus sequence: GSCTGCCWSWGCCTCS

Best Matches for Motif ID 48 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 16
Similarity score: 0.0237024

Alignment:
VDWDARRGACGCGGWHGGAKHV
------SGAGGCWSWGGCAGSC

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0327172

Alignment:
DVMHHDHKGACCCTCCTSVCBH
GSCTGCCWSWGCCTCS------

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 16
Similarity score: 0.034796

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
---SGAGGCWSWGGCAGSC----

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 16
Similarity score: 0.036242

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
---GSCTGCCWSWGCCTCS---

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0393403

Alignment:
HDTBHHCCHTAGCAACVVDHHHH
-GSCTGCCWSWGCCTCS------

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH

Dataset #: 1 Motif ID: 49 Motif name: C049

Original motif Reverse complement motif
Consensus sequence: WAWWAAAATAAWT Consensus sequence: AWTTATTTTWWTW

Best Matches for Motif ID 49 (Highest to Lowest)

Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0235016

Alignment:
ADDDYAWAACAAMAHH
-WAWWAAAATAAWT--

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT

Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0251228

Alignment:
HHWAWGTAAAYAAAVDB
--WAWWAAAATAAWT--

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 13
Similarity score: 0.0269927

Alignment:
HDDDATTTTATTKVRDB
AWTTATTTTWWTW----

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0270626

Alignment:
DWAATRTAAACAAWVVB
--WAWWAAAATAAWT--

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0290157

Alignment:
HHHTTRTTDTTTKDH
-AWTTATTTTWWTW-

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH

Dataset #: 1 Motif ID: 50 Motif name: C050

Original motif Reverse complement motif
Consensus sequence: CBGCCKCYSCCTCYMG Consensus sequence: CYKGAGGSMGRGGCVG

Best Matches for Motif ID 50 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 16
Similarity score: 0.0274857

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
-----CBGCCKCYSCCTCYMG-

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 16
Similarity score: 0.0294264

Alignment:
VHYTCCDWCCGCGTCMMTHWHV
--CBGCCKCYSCCTCYMG----

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0295783

Alignment:
BHHDYGGGGGGGGBVD
CYKGAGGSMGRGGCVG

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0315534

Alignment:
HVDVGGGHGGGGDBHB
CYKGAGGSMGRGGCVG

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 16
Similarity score: 0.0322386

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-----CBGCCKCYSCCTCYMG--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Dataset #: 1 Motif ID: 51 Motif name: C051

Original motif Reverse complement motif
Consensus sequence: SGCCCCCHCCCS Consensus sequence: SGGGHGGGGGCS

Best Matches for Motif ID 51 (Highest to Lowest)

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.00935805

Alignment:
DBCCCCCCCCCCMYC
-SGCCCCCHCCCS--

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0122535

Alignment:
DHHDGGGCGRGGKHBH
---SGGGHGGGGGCS-

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.0145224

Alignment:
HVBCCCCCCCCMHHHB
-SGCCCCCHCCCS---

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0145616

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
---SGCCCCCHCCCS-------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 12
Similarity score: 0.0226961

Alignment:
VYWVVHCRCCACMCACGAHSBHH
---SGCCCCCHCCCS--------

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Dataset #: 1 Motif ID: 52 Motif name: C052

Original motif Reverse complement motif
Consensus sequence: GAGTBVSAGGCMAGVC Consensus sequence: GVCTYGCCTSVVACTC

Best Matches for Motif ID 52 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 16
Similarity score: 0.0423398

Alignment:
HDBABCGBKRGYGGCGMSBHAK
----GAGTBVSAGGCMAGVC--

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 16
Similarity score: 0.047746

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
--GVCTYGCCTSVVACTC-----

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00064
Motif name: Sox18_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0490125

Alignment:
DBVBTRAATTYADDHV
GAGTBVSAGGCMAGVC

Original motif Reverse complement motif
Consensus sequence: DBVBTRAATTYADDHV Consensus sequence: VDHDTKAATTMABBBH

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 16
Similarity score: 0.0499529

Alignment:
BADHBDHCGCCCMCGCAHHDBBV
GVCTYGCCTSVVACTC-------

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0535021

Alignment:
MHHHWHYTMCCHCCCACVAABVH
GAGTBVSAGGCMAGVC-------

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY

Dataset #: 1 Motif ID: 53 Motif name: C053

Original motif Reverse complement motif
Consensus sequence: RMACRGAGAAAYCCTGKY Consensus sequence: MRCAGGMTTTCTCKGTYK

Best Matches for Motif ID 53 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0388232

Alignment:
HGDHVHKGACCACCCGGBGBGDB
--MRCAGGMTTTCTCKGTYK---

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.0410442

Alignment:
HDTBHHCCHTAGCAACVVDHHHH
----RMACRGAGAAAYCCTGKY-

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH

Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0413339

Alignment:
DDRMHBACGCGYGCGTDGBBDB
---MRCAGGMTTTCTCKGTYK-

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0440408

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
RMACRGAGAAAYCCTGKY-----

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0442508

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
-RMACRGAGAAAYCCTGKY---

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH

Dataset #: 1 Motif ID: 54 Motif name: C054

Original motif Reverse complement motif
Consensus sequence: SSCCDCCCCCCCSS Consensus sequence: SSGGGGGGGHGGSS

Best Matches for Motif ID 54 (Highest to Lowest)

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0162118

Alignment:
HBBBCCGCCCCWHHHV
--SSCCDCCCCCCCSS

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0185646

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
---SSCCDCCCCCCCSS-----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0201409

Alignment:
DBCCCCCCCCCCMYC
-SSCCDCCCCCCCSS

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0221949

Alignment:
HHHHDGGGGCGGDBHDV
SSGGGGGGGHGGSS---

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0265213

Alignment:
HVBCCCCCCCCMHHHB
-SSCCDCCCCCCCSS-

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Dataset #: 1 Motif ID: 55 Motif name: C055

Original motif Reverse complement motif
Consensus sequence: MKAGAGMKMKAGAGMK Consensus sequence: RYCTCTRRRRCTCTRR

Best Matches for Motif ID 55 (Highest to Lowest)

Motif ID: UP00101
Motif name: Sox12_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.039204

Alignment:
VVDBASACAAAGRADH
MKAGAGMKMKAGAGMK

Original motif Reverse complement motif
Consensus sequence: VVDBASACAAAGRADH Consensus sequence: HDTMCTTTGTSTVDBB

Motif ID: UP00080
Motif name: Gata5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0398738

Alignment:
VVBHRAGATATCWDHBB
-MKAGAGMKMKAGAGMK

Original motif Reverse complement motif
Consensus sequence: VVBHRAGATATCWDHBB Consensus sequence: VVHHWGATATCTMHBBV

Motif ID: UP00019
Motif name: Zbtb12_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0427919

Alignment:
BBGATCTAGAACBKHDB
-RYCTCTRRRRCTCTRR

Original motif Reverse complement motif
Consensus sequence: BDHRBGTTCTAGATCVB Consensus sequence: BBGATCTAGAACBKHDB

Motif ID: UP00075
Motif name: Sox15_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0433178

Alignment:
HDDDDAACAATWRRBHD
-MKAGAGMKMKAGAGMK

Original motif Reverse complement motif
Consensus sequence: HDDDDAACAATWRRBHD Consensus sequence: DHVKMWATTGTTHDHDH

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 16
Similarity score: 0.0454282

Alignment:
VYWVVHCRCCACMCACGAHSBHH
-------RYCTCTRRRRCTCTRR

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Dataset #: 1 Motif ID: 56 Motif name: C056

Original motif Reverse complement motif
Consensus sequence: AWMAAAYWRAMAAWH Consensus sequence: HWTTYTKWMTTTYWT

Best Matches for Motif ID 56 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0213582

Alignment:
VBDDAAAAAAAAMVBHH
-AWMAAAYWRAMAAWH-

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0251847

Alignment:
HDYAAAHAAMAADHD
AWMAAAYWRAMAAWH

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH

Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0274993

Alignment:
DBTHHAAAAAAAAVHDH
-AWMAAAYWRAMAAWH-

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH

Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.027785

Alignment:
HARTHAATTAWTAVDHD
-AWMAAAYWRAMAAWH-

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.02926

Alignment:
HDDDATTTTATTKVRDB
-HWTTYTKWMTTTYWT-

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB

Dataset #: 1 Motif ID: 57 Motif name: C057

Original motif Reverse complement motif
Consensus sequence: WRMARYAAMARYAAMAWH Consensus sequence: HWTRTTMKTYTTMKTYKW

Best Matches for Motif ID 57 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 18
Similarity score: 0.0381479

Alignment:
HHBDHDDAACAATDRHHHHHBW
-WRMARYAAMARYAAMAWH---

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.052401

Alignment:
VVYDDDCHCAVACAATTDBVAC
----WRMARYAAMARYAAMAWH

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0540821

Alignment:
DCATDBTGHGCATKMTTBRSWR
--HWTRTTMKTYTTMKTYKW--

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0542401

Alignment:
HBHDVHDTCTTATCTHTDDHDV
--HWTRTTMKTYTTMKTYKW--

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0552305

Alignment:
HHHBBMGATAVHATCWVVDHVH
---WRMARYAAMARYAAMAWH-

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH

Dataset #: 1 Motif ID: 58 Motif name: C058

Original motif Reverse complement motif
Consensus sequence: CYCCBCSGVCYCCBC Consensus sequence: GVGGMGVCSGBGGMG

Best Matches for Motif ID 58 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 15
Similarity score: 0.0246506

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-GVGGMGVCSGBGGMG------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00036
Motif name: Myf6_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0266507

Alignment:
GGDGBGVCTGTKVVB
GVGGMGVCSGBGGMG

Original motif Reverse complement motif
Consensus sequence: VVVRACAGVCBCDCC Consensus sequence: GGDGBGVCTGTKVVB

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0296277

Alignment:
BHHBHCCGCCCCDHHHH
CYCCBCSGVCYCCBC--

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0309574

Alignment:
BDHHMCGCCCCCTHVBB
--CYCCBCSGVCYCCBC

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0331968

Alignment:
BHVDCCCCDCCCBDBH
CYCCBCSGVCYCCBC-

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB

Dataset #: 1 Motif ID: 59 Motif name: C059

Original motif Reverse complement motif
Consensus sequence: SYCCDCCCCCRG Consensus sequence: CMGGGGGDGGKS

Best Matches for Motif ID 59 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 12
Similarity score: 0.0197332

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
------SYCCDCCCCCRG----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0224264

Alignment:
HHHHDGGGGCGGDBHDV
--CMGGGGGDGGKS---

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 12
Similarity score: 0.0231684

Alignment:
HVDVGGGHGGGGDBHB
CMGGGGGDGGKS----

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.023387

Alignment:
BHHHWGGGGCGGBBVH
--CMGGGGGDGGKS--

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 12
Similarity score: 0.0246213

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
-----CMGGGGGDGGKS------

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Dataset #: 1 Motif ID: 60 Motif name: C060

Original motif Reverse complement motif
Consensus sequence: SMGGCAKMGGCAKS Consensus sequence: SYTGCCYYTGCCYS

Best Matches for Motif ID 60 (Highest to Lowest)

Motif ID: UP00010
Motif name: Tcfap2b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0309254

Alignment:
HHKGCCYSRGGCWAD
SYTGCCYYTGCCYS-

Original motif Reverse complement motif
Consensus sequence: DTWGCCKSMGGCRHH Consensus sequence: HHKGCCYSRGGCWAD

Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0349665

Alignment:
HHBVHTGACCTTGVDHD
---SYTGCCYYTGCCYS

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD

Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 14
Similarity score: 0.0406726

Alignment:
DVMHHDHKGACCCTCCTSVCBH
-----SYTGCCYYTGCCYS---

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH

Motif ID: UP00028
Motif name: Tcfap2e_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0419455

Alignment:
DTHGCCTSAGGCHHH
SYTGCCYYTGCCYS-

Original motif Reverse complement motif
Consensus sequence: HHHGCCTSAGGCDAD Consensus sequence: DTHGCCTSAGGCHHH

Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0436588

Alignment:
BHVDCCCCDCCCBDBH
SYTGCCYYTGCCYS--

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB

Dataset #: 1 Motif ID: 61 Motif name: C061

Original motif Reverse complement motif
Consensus sequence: MRGMMBAGGCHGGCCK Consensus sequence: RGGCCDGCCTBRRCMY

Best Matches for Motif ID 61 (Highest to Lowest)

Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0354983

Alignment:
DDRMHBACGCGYGCGTDGBBDB
MRGMMBAGGCHGGCCK------

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 16
Similarity score: 0.0371599

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-----RGGCCDGCCTBRRCMY--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0397188

Alignment:
BBBDVVRGACCACCCAVGABBAB
------RGGCCDGCCTBRRCMY-

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 16
Similarity score: 0.0410046

Alignment:
ABBBBVVRGACCACCCACRDBBM
-------RGGCCDGCCTBRRCMY

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0416624

Alignment:
VDWDARRGACGCGGWHGGAKHV
-----MRGMMBAGGCHGGCCK-

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Dataset #: 1 Motif ID: 62 Motif name: C062

Original motif Reverse complement motif
Consensus sequence: WWAMAWRMAMAYWAAHWW Consensus sequence: WWDTTWMTRTRKWTYTWW

Best Matches for Motif ID 62 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0496099

Alignment:
WBHHHHHMDATTGTTHDHDVHH
-WWDTTWMTRTRKWTYTWW---

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0618489

Alignment:
HBHDVHDTCTTATCTHTDDHDV
---WWDTTWMTRTRKWTYTWW-

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0618699

Alignment:
MWSMBAARRATGCDCABHATGD
-WWAMAWRMAMAYWAAHWW---

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0626028

Alignment:
VVYDDDCHCAVACAATTDBVAC
---WWAMAWRMAMAYWAAHWW-

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.065917

Alignment:
HHHBBMGATAVHATCWVVDHVH
---WWAMAWRMAMAYWAAHWW-

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH

Dataset #: 1 Motif ID: 63 Motif name: C063

Original motif Reverse complement motif
Consensus sequence: MAAKMWAAAAWKHAA Consensus sequence: TTHRWTTTTWYRTTY

Best Matches for Motif ID 63 (Highest to Lowest)

Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0344456

Alignment:
HDTYTTGTTWTKDDDT
TTHRWTTTTWYRTTY-

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT

Motif ID: UP00039
Motif name: Foxj3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0345147

Alignment:
DVHWDTGTTWTGDTBDH
TTHRWTTTTWYRTTY--

Original motif Reverse complement motif
Consensus sequence: HDBAHCAWAACADWDVD Consensus sequence: DVHWDTGTTWTGDTBDH

Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0355538

Alignment:
DDHBTTTTTTTTHDAVH
--TTHRWTTTTWYRTTY

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH

Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0356888

Alignment:
DHDBTAWTAATTHAKTH
--TTHRWTTTTWYRTTY

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH

Motif ID: UP00213
Motif name: Hoxa9
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0367298

Alignment:
WDTAWTTTWATGKCCGD
TTHRWTTTTWYRTTY--

Original motif Reverse complement motif
Consensus sequence: DCGGYCATWAAAWTADW Consensus sequence: WDTAWTTTWATGKCCGD

Dataset #: 1 Motif ID: 64 Motif name: C064

Original motif Reverse complement motif
Consensus sequence: DAAAKAAAAMAAK Consensus sequence: RTTYTTTTRTTTD

Best Matches for Motif ID 64 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0175156

Alignment:
HHVBYTTTTTTTTDDVV
--RTTYTTTTRTTTD--

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00028
Motif name: Tcfap2e_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0210094

Alignment:
HDCDBRAAAAAADD
DAAAKAAAAMAAK-

Original motif Reverse complement motif
Consensus sequence: HDCDBRAAAAAADD Consensus sequence: DDTTTTTTMBDGDH

Motif ID: UP00025
Motif name: Foxk1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.030589

Alignment:
HDDTGTTKTTKTHHD
--RTTYTTTTRTTTD

Original motif Reverse complement motif
Consensus sequence: HHHAYAAYAACAHHH Consensus sequence: HDDTGTTKTTKTHHD

Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.0322312

Alignment:
DDHBTTTTTTTTHDAVH
-RTTYTTTTRTTTD---

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH

Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0326524

Alignment:
HDHHTTTTATTKKHDD
---RTTYTTTTRTTTD

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD

Dataset #: 1 Motif ID: 65 Motif name: C065

Original motif Reverse complement motif
Consensus sequence: MSTGAGWTCMASK Consensus sequence: YSTRGAWCTCASR

Best Matches for Motif ID 65 (Highest to Lowest)

Motif ID: UP00080
Motif name: Gata5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0144176

Alignment:
VVHHWGATATCTMHBBV
--MSTGAGWTCMASK--

Original motif Reverse complement motif
Consensus sequence: VVBHRAGATATCWDHBB Consensus sequence: VVHHWGATATCTMHBBV

Motif ID: UP00148
Motif name: Hdx
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.0160219

Alignment:
DDKDHGAAATCAHHBHV
-YSTRGAWCTCASR---

Original motif Reverse complement motif
Consensus sequence: DDKDHGAAATCAHHBHV Consensus sequence: BDBDHTGATTTCDHYDD

Motif ID: UP00066
Motif name: Hnf4a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0188193

Alignment:
BDBVMGGGGTCAABHDV
--MSTGAGWTCMASK--

Original motif Reverse complement motif
Consensus sequence: BDBVMGGGGTCAABHDV Consensus sequence: BHHVTTGACCCCYVVDB

Motif ID: UP00020
Motif name: Atf1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0224584

Alignment:
DMDMTGACGTCAKHBD
--MSTGAGWTCMASK-

Original motif Reverse complement motif
Consensus sequence: DBDRTGACGTCAYHRD Consensus sequence: DMDMTGACGTCAKHBD

Motif ID: UP00054
Motif name: Tcf7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 13
Similarity score: 0.0232284

Alignment:
BHHASATCAAAGGAHHH
YSTRGAWCTCASR----

Original motif Reverse complement motif
Consensus sequence: BHHASATCAAAGGAHHH Consensus sequence: HHHTCCTTTGATSTHHV

Dataset #: 1 Motif ID: 66 Motif name: C066

Original motif Reverse complement motif
Consensus sequence: MAMTCCCMSKGCCTCTK Consensus sequence: YAGAGGCRSYGGGARTR

Best Matches for Motif ID 66 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 17
Similarity score: 0.03808

Alignment:
VDWDARRGACGCGGWHGGAKHV
-----YAGAGGCRSYGGGARTR

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 17
Similarity score: 0.0499224

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
---YAGAGGCRSYGGGARTR---

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0510562

Alignment:
HHHHDGGGGCGGDBHDV
YAGAGGCRSYGGGARTR

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 17
Similarity score: 0.0517099

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
---YAGAGGCRSYGGGARTR---

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 17
Similarity score: 0.0522208

Alignment:
HDBABCGBKRGYGGCGMSBHAK
--YAGAGGCRSYGGGARTR---

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Dataset #: 1 Motif ID: 67 Motif name: C067

Original motif Reverse complement motif
Consensus sequence: WDAAAAAARKAAAD Consensus sequence: DTTTRKTTTTTTDW

Best Matches for Motif ID 67 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0232781

Alignment:
VBDDAAAAAAAAMVBHH
---WDAAAAAARKAAAD

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0263721

Alignment:
HDYAAAHAAMAADHD
-WDAAAAAARKAAAD

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH

Motif ID: UP00014
Motif name: Sox17_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0301541

Alignment:
DDWTBAATTGTTDDB
-DTTTRKTTTTTTDW

Original motif Reverse complement motif
Consensus sequence: VDDAACAATTVAWHD Consensus sequence: DDWTBAATTGTTDDB

Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0307495

Alignment:
HBDDDAACAAAGRVBHH
---WDAAAAAARKAAAD

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH

Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0312958

Alignment:
HBDDRAACAAAGRABHH
---WDAAAAAARKAAAD

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH

Dataset #: 1 Motif ID: 68 Motif name: C068

Original motif Reverse complement motif
Consensus sequence: BGCYKCTGCMTCCM Consensus sequence: YGGAYGCAGYKGCV

Best Matches for Motif ID 68 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0242069

Alignment:
VHYTCCDWCCGCGTCMMTHWHV
---BGCYKCTGCMTCCM-----

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.02581

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
---BGCYKCTGCMTCCM-----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00031
Motif name: Zbtb3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0294733

Alignment:
BBBAVTGCAGTGBBVDD
-YGGAYGCAGYKGCV--

Original motif Reverse complement motif
Consensus sequence: DDBBBCACTGCABTBBB Consensus sequence: BBBAVTGCAGTGBBVDD

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 14
Similarity score: 0.0297174

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
BGCYKCTGCMTCCM---------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0300511

Alignment:
BHHBHCCGCCCCDHHHH
BGCYKCTGCMTCCM---

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Dataset #: 1 Motif ID: 69 Motif name: C069

Original motif Reverse complement motif
Consensus sequence: AHAAMAAYWDYAAMAAHD Consensus sequence: DHTTYTTMDWMTTYTTHT

Best Matches for Motif ID 69 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0547241

Alignment:
HHBDHDDAACAATDRHHHHHBW
--AHAAMAAYWDYAAMAAHD--

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0556229

Alignment:
HBHDVHDTCTTATCTHTDDHDV
-DHTTYTTMDWMTTYTTHT---

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0564427

Alignment:
VVYDDDCHCAVACAATTDBVAC
AHAAMAAYWDYAAMAAHD----

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.058939

Alignment:
HHHBBMGATAVHATCWVVDHVH
-AHAAMAAYWDYAAMAAHD---

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH

Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.064465

Alignment:
DCATDBTGHGCATKMTTBRSWR
-DHTTYTTMDWMTTYTTHT---

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR

Dataset #: 1 Motif ID: 70 Motif name: C070

Original motif Reverse complement motif
Consensus sequence: GVGABAGAVAGASVK Consensus sequence: RBSTCTVTCTBTCVC

Best Matches for Motif ID 70 (Highest to Lowest)

Motif ID: >UP00011
Motif name: Irf6_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0371635

Alignment:
VBBACTCYCGGKHDV
RBSTCTVTCTBTCVC

Original motif Reverse complement motif
Consensus sequence: VBBACTCYCGGKHDV Consensus sequence: VDDRCCGMGAGTBBB

Motif ID: UP00101
Motif name: Sox12_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0394179

Alignment:
VVDBASACAAAGRADH
-GVGABAGAVAGASVK

Original motif Reverse complement motif
Consensus sequence: VVDBASACAAAGRADH Consensus sequence: HDTMCTTTGTSTVDBB

Motif ID: UP00018
Motif name: Irf4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0452113

Alignment:
VVBAYTCTCGGWHDB
RBSTCTVTCTBTCVC

Original motif Reverse complement motif
Consensus sequence: VVBAYTCTCGGWHDB Consensus sequence: BHHWCCGAGAMTVVB

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0480451

Alignment:
VBDDAAAAAAAAMVBHH
GVGABAGAVAGASVK--

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 15
Similarity score: 0.0486114

Alignment:
HVHBVTGTCTGGDDHDD
--RBSTCTVTCTBTCVC

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD

Dataset #: 1 Motif ID: 71 Motif name: C071

Original motif Reverse complement motif
Consensus sequence: SVCCACSVSCACCBS Consensus sequence: SBGGTGSVSGTGGVS

Best Matches for Motif ID 71 (Highest to Lowest)

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0205519

Alignment:
HVBCCCCCCCCMHHHB
-SVCCACSVSCACCBS

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.020698

Alignment:
BDHHMCGCCCCCTHVBB
SVCCACSVSCACCBS--

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0211186

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-SBGGTGSVSGTGGVS------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.022472

Alignment:
VYWVVHCRCCACMCACGAHSBHH
------SVCCACSVSCACCBS--

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 15
Similarity score: 0.0250115

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
------SVCCACSVSCACCBS--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Dataset #: 1 Motif ID: 72 Motif name: C072

Original motif Reverse complement motif
Consensus sequence: SWAGCCVDGGCW Consensus sequence: WGCCHVGGCTWS

Best Matches for Motif ID 72 (Highest to Lowest)

Motif ID: UP00010
Motif name: Tcfap2b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.00558864

Alignment:
HHKGCCYSRGGCWAD
-SWAGCCVDGGCW--

Original motif Reverse complement motif
Consensus sequence: DTWGCCKSMGGCRHH Consensus sequence: HHKGCCYSRGGCWAD

Motif ID: UP00002
Motif name: Sp4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.00743548

Alignment:
BDWAGGCGTGBCHHD
-SWAGCCVDGGCW--

Original motif Reverse complement motif
Consensus sequence: BDWAGGCGTGBCHHD Consensus sequence: HHDGBCACGCCTWDB

Motif ID: UP00028
Motif name: Tcfap2e_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0141542

Alignment:
HHHGCCTSAGGCDAD
-SWAGCCVDGGCW--

Original motif Reverse complement motif
Consensus sequence: HHHGCCTSAGGCDAD Consensus sequence: DTHGCCTSAGGCHHH

Motif ID: UP00087
Motif name: Tcfap2c_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0187577

Alignment:
WHHSCCYSRGGSDAD
--WGCCHVGGCTWS-

Original motif Reverse complement motif
Consensus sequence: WHHSCCYSRGGSDAD Consensus sequence: DTHSCCKSMGGSHHW

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0187696

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-SWAGCCVDGGCW---------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Dataset #: 1 Motif ID: 73 Motif name: C073

Original motif Reverse complement motif
Consensus sequence: YMWGSMYAGCCRKSKCTR Consensus sequence: KAGYSYKGGCTKRSCWYK

Best Matches for Motif ID 73 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0271167

Alignment:
HGDHVHKGACCACCCGGBGBGDB
----YMWGSMYAGCCRKSKCTR-

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 18
Similarity score: 0.0280669

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
-----KAGYSYKGGCTKRSCWYK

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0284377

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
---YMWGSMYAGCCRKSKCTR--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0313979

Alignment:
HDBABCGBKRGYGGCGMSBHAK
--KAGYSYKGGCTKRSCWYK--

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.032852

Alignment:
BBBDVVRGACCACCCAVGABBAB
----YMWGSMYAGCCRKSKCTR-

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Dataset #: 1 Motif ID: 74 Motif name: C074

Original motif Reverse complement motif
Consensus sequence: CCAGGCWGGCSKS Consensus sequence: SRSGCCWGCCTGG

Best Matches for Motif ID 74 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 13
Similarity score: 0.0257723

Alignment:
BBBDVVRGACCACCCAVGABBAB
-----SRSGCCWGCCTGG-----

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 13
Similarity score: 0.0270649

Alignment:
DDRMHBACGCGYGCGTDGBBDB
-----SRSGCCWGCCTGG----

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD

Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0283276

Alignment:
BHBHDTGGCGGGGBDHD
---CCAGGCWGGCSKS-

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD

Motif ID: UP00002
Motif name: Sp4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0313235

Alignment:
HHDGBCACGCCTWDB
-SRSGCCWGCCTGG-

Original motif Reverse complement motif
Consensus sequence: BDWAGGCGTGBCHHD Consensus sequence: HHDGBCACGCCTWDB

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 13
Similarity score: 0.0327573

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
------CCAGGCWGGCSKS----

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Dataset #: 1 Motif ID: 75 Motif name: C075

Original motif Reverse complement motif
Consensus sequence: MGGCAGMSGCAGSCK Consensus sequence: YGSCTGCSYCTGCCY

Best Matches for Motif ID 75 (Highest to Lowest)

Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 15
Similarity score: 0.0343574

Alignment:
BBYVVCAGCTGCBVHHD
--MGGCAGMSGCAGSCK

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0352972

Alignment:
HBBBCCGCCCCWHHHV
-YGSCTGCSYCTGCCY

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH

Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0363915

Alignment:
HHBVHTGACCTTGVDHD
-YGSCTGCSYCTGCCY-

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 15
Similarity score: 0.036959

Alignment:
BHHBHCCGCCCCDHHHH
--YGSCTGCSYCTGCCY

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0381017

Alignment:
DDRMHBACGCGYGCGTDGBBDB
MGGCAGMSGCAGSCK-------

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD

Dataset #: 1 Motif ID: 76 Motif name: C076

Original motif Reverse complement motif
Consensus sequence: ASCTRCCTCYBCSB Consensus sequence: VSGBKGAGGMAGST

Best Matches for Motif ID 76 (Highest to Lowest)

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0266758

Alignment:
BHHHWGGGGCGGBBVH
VSGBKGAGGMAGST--

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0272671

Alignment:
HHHHDGGGGCGGDBHDV
VSGBKGAGGMAGST---

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00013
Motif name: Gabpa_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0302132

Alignment:
DBVVDRSGGAWKVHKG
VSGBKGAGGMAGST--

Original motif Reverse complement motif
Consensus sequence: CYDBYWTCCSMHBVVH Consensus sequence: DBVVDRSGGAWKVHKG

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0328017

Alignment:
BHHDYGGGGGGGGBVD
-VSGBKGAGGMAGST-

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00022
Motif name: Zfp740_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0330521

Alignment:
HVKDCCGGGGGGWADDD
---VSGBKGAGGMAGST

Original motif Reverse complement motif
Consensus sequence: DDDTWCCCCCCGGDRVH Consensus sequence: HVKDCCGGGGGGWADDD

Dataset #: 1 Motif ID: 77 Motif name: C077

Original motif Reverse complement motif
Consensus sequence: SBCCCCGGSSCCCCCB Consensus sequence: BGGGGGSSCCGGGGBS

Best Matches for Motif ID 77 (Highest to Lowest)

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0480753

Alignment:
BDHHMCGCCCCCTHVBB
SBCCCCGGSSCCCCCB-

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0484396

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-------BGGGGGSSCCGGGGBS

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0490479

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
SBCCCCGGSSCCCCCB------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0535184

Alignment:
HHHHDGGGGCGGDBHDV
-BGGGGGSSCCGGGGBS

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0543092

Alignment:
VDWDARRGACGCGGWHGGAKHV
SBCCCCGGSSCCCCCB------

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Dataset #: 1 Motif ID: 78 Motif name: C078

Original motif Reverse complement motif
Consensus sequence: YRGAYAGAGRGAYR Consensus sequence: KMTCKCTCTMTCKM

Best Matches for Motif ID 78 (Highest to Lowest)

Motif ID: >UP00011
Motif name: Irf6_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0289623

Alignment:
VDDRCCGMGAGTBBB
-KMTCKCTCTMTCKM

Original motif Reverse complement motif
Consensus sequence: VBBACTCYCGGKHDV Consensus sequence: VDDRCCGMGAGTBBB

Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0334841

Alignment:
BHHDTCCCACTCBDBV
--KMTCKCTCTMTCKM

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV

Motif ID: UP00040
Motif name: Irf5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0339287

Alignment:
BHDAHCGAGARTHBV
YRGAYAGAGRGAYR-

Original motif Reverse complement motif
Consensus sequence: BHDAHCGAGARTHBV Consensus sequence: VBHAKTCTCGHTHHV

Motif ID: UP00078
Motif name: Arid3a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0352486

Alignment:
HHVVRTATCRDVDHD
-YRGAYAGAGRGAYR

Original motif Reverse complement motif
Consensus sequence: HHVVRTATCRDVDHD Consensus sequence: DHDBDKGATAMVVDH

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 14
Similarity score: 0.0392148

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-------YRGAYAGAGRGAYR-

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Dataset #: 1 Motif ID: 79 Motif name: C079

Original motif Reverse complement motif
Consensus sequence: ADAAAKWAAAAWAKARW Consensus sequence: WKTRTWTTTTWRTTTDT

Best Matches for Motif ID 79 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0265367

Alignment:
VBDDAAAAAAAAMVBHH
ADAAAKWAAAAWAKARW

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 17
Similarity score: 0.0319437

Alignment:
WBHHHHHMDATTGTTHDHDVHH
----WKTRTWTTTTWRTTTDT-

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0359246

Alignment:
DBTHHAAAAAAAAVHDH
ADAAAKWAAAAWAKARW

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.036697

Alignment:
BDHDDADAGATAAGADHBDHVD
-----ADAAAKWAAAAWAKARW

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0381106

Alignment:
DDAATGTAAACAAAVVB
ADAAAKWAAAAWAKARW

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD

Dataset #: 1 Motif ID: 80 Motif name: C080

Original motif Reverse complement motif
Consensus sequence: WWAAVAAMMHAAWW Consensus sequence: WWTTHRYTTBTTWW

Best Matches for Motif ID 80 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0245388

Alignment:
VBDDAAAAAAAAMVBHH
---WWAAVAAMMHAAWW

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00170
Motif name: Isl2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0341915

Alignment:
HWDTTAATYKMTTHHR
-WWTTHRYTTBTTWW-

Original motif Reverse complement motif
Consensus sequence: MHHAAYYMATTAADWH Consensus sequence: HWDTTAATYKMTTHHR

Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0349632

Alignment:
DBTHHAAAAAAAAVHDH
---WWAAVAAMMHAAWW

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH

Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0362632

Alignment:
ADDDYAWAACAAMAHH
WWAAVAAMMHAAWW--

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT

Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0380401

Alignment:
HDYAAAHAAMAADHD
WWAAVAAMMHAAWW-

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH

Dataset #: 1 Motif ID: 81 Motif name: C081

Original motif Reverse complement motif
Consensus sequence: BCCSHCCCSCMG Consensus sequence: CYGSGGGHSGGB

Best Matches for Motif ID 81 (Highest to Lowest)

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0133435

Alignment:
DBCCCCCCCCCCMYC
--BCCSHCCCSCMG-

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0173124

Alignment:
HBBBCCGCCCCWHHHV
---BCCSHCCCSCMG-

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0193295

Alignment:
BHHBHCCGCCCCDHHHH
----BCCSHCCCSCMG-

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0214278

Alignment:
HVBCCCCCCCCMHHHB
-BCCSHCCCSCMG---

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 12
Similarity score: 0.0230163

Alignment:
HDBABCGBKRGYGGCGMSBHAK
----CYGSGGGHSGGB------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Dataset #: 1 Motif ID: 82 Motif name: C082

Original motif Reverse complement motif
Consensus sequence: WKAAARAAARAAW Consensus sequence: WTTKTTTMTTTYW

Best Matches for Motif ID 82 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0105695

Alignment:
VBDDAAAAAAAAMVBHH
--WKAAARAAARAAW--

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00028
Motif name: Tcfap2e_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0217842

Alignment:
DDTTTTTTMBDGDH
-WTTKTTTMTTTYW

Original motif Reverse complement motif
Consensus sequence: HDCDBRAAAAAADD Consensus sequence: DDTTTTTTMBDGDH

Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0234988

Alignment:
HHHTTRTTDTTTKDH
--WTTKTTTMTTTYW

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH

Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.0265681

Alignment:
DDHBTTTTTTTTHDAVH
-WTTKTTTMTTTYW---

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH

Motif ID: UP00097
Motif name: Mtf1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0267248

Alignment:
VDTHTTTHHTATDH
WTTKTTTMTTTYW-

Original motif Reverse complement motif
Consensus sequence: HDATAHDAAAHADV Consensus sequence: VDTHTTTHHTATDH

Dataset #: 1 Motif ID: 83 Motif name: C083

Original motif Reverse complement motif
Consensus sequence: CKBCCTSYRSCTCMMG Consensus sequence: CYRGAGSMKSAGGBRG

Best Matches for Motif ID 83 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 16
Similarity score: 0.0269608

Alignment:
VHYTCCDWCCGCGTCMMTHWHV
--CKBCCTSYRSCTCMMG----

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0336468

Alignment:
HBBBCCGCCCCWHHHV
CKBCCTSYRSCTCMMG

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 16
Similarity score: 0.0351892

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
-CKBCCTSYRSCTCMMG-----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.035551

Alignment:
HVDVGGGHGGGGDBHB
CYRGAGSMKSAGGBRG

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.035682

Alignment:
BHHBHCCGCCCCDHHHH
-CKBCCTSYRSCTCMMG

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Dataset #: 1 Motif ID: 84 Motif name: C084

Original motif Reverse complement motif
Consensus sequence: SCTGCMKCTGCVB Consensus sequence: VVGCAGYRGCAGS

Best Matches for Motif ID 84 (Highest to Lowest)

Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 13
Similarity score: 0.0229768

Alignment:
HHDVVGCAGCTGVBKVB
---VVGCAGYRGCAGS-

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB

Motif ID: UP00036
Motif name: Myf6_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0256725

Alignment:
VVVRACAGVCBCDCC
SCTGCMKCTGCVB--

Original motif Reverse complement motif
Consensus sequence: VVVRACAGVCBCDCC Consensus sequence: GGDGBGVCTGTKVVB

Motif ID: UP00013
Motif name: Gabpa_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0310274

Alignment:
CYDBYWTCCSMHBVVH
SCTGCMKCTGCVB---

Original motif Reverse complement motif
Consensus sequence: CYDBYWTCCSMHBVVH Consensus sequence: DBVVDRSGGAWKVHKG

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 13
Similarity score: 0.0325376

Alignment:
BHHBHCCGCCCCDHHHH
----SCTGCMKCTGCVB

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0348713

Alignment:
BHDCVCAGCAGGHVD
--VVGCAGYRGCAGS

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB

Dataset #: 1 Motif ID: 85 Motif name: C085

Original motif Reverse complement motif
Consensus sequence: VSGRSBHAGARDVSGRS Consensus sequence: SKCSVHMTCTDBSKCSV

Best Matches for Motif ID 85 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 17
Similarity score: 0.0345982

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
----SKCSVHMTCTDBSKCSV-

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0368478

Alignment:
BBYVVCAGCTGCBVHHD
SKCSVHMTCTDBSKCSV

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0387638

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
------VSGRSBHAGARDVSGRS

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 17
Similarity score: 0.0394694

Alignment:
GTVBDAATTGTVTGHGDDHKVB
---SKCSVHMTCTDBSKCSV--

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00016
Motif name: Sry_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0403194

Alignment:
HHDHDRAACAATDDVHV
VSGRSBHAGARDVSGRS

Original motif Reverse complement motif
Consensus sequence: HHDHDRAACAATDDVHV Consensus sequence: VHVHDATTGTTMHDDDH

Dataset #: 1 Motif ID: 86 Motif name: C086

Original motif Reverse complement motif
Consensus sequence: CSGGAGKCWGMGGSASG Consensus sequence: CSTSCCYCWGRCTCCSG

Best Matches for Motif ID 86 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 17
Similarity score: 0.0432994

Alignment:
VYWVVHCRCCACMCACGAHSBHH
----CSTSCCYCWGRCTCCSG--

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 17
Similarity score: 0.0456174

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-CSGGAGKCWGMGGSASG----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 17
Similarity score: 0.0460804

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
----CSTSCCYCWGRCTCCSG--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 17
Similarity score: 0.052654

Alignment:
VDWDARRGACGCGGWHGGAKHV
----CSGGAGKCWGMGGSASG-

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 17
Similarity score: 0.0530373

Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
----CSGGAGKCWGMGGSASG--

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Dataset #: 1 Motif ID: 87 Motif name: C087

Original motif Reverse complement motif
Consensus sequence: WRGACCRSSYTGGCYW Consensus sequence: WKGCCAMSSKGGTCKW

Best Matches for Motif ID 87 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 16
Similarity score: 0.0240508

Alignment:
DVTTVVCVYGGHGGYCHHDMYB
--WKGCCAMSSKGGTCKW----

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 16
Similarity score: 0.0273083

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-----WKGCCAMSSKGGTCKW--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0299939

Alignment:
HVGVSAGGAGGGTCYHHHHYVH
------WRGACCRSSYTGGCYW

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 16
Similarity score: 0.0316295

Alignment:
BBBDVVRGACCACCCAVGABBAB
-----WRGACCRSSYTGGCYW--

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 16
Similarity score: 0.031888

Alignment:
HGDHVHKGACCACCCGGBGBGDB
-----WRGACCRSSYTGGCYW--

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Dataset #: 1 Motif ID: 88 Motif name: C088

Original motif Reverse complement motif
Consensus sequence: SKCACTCWGTAGAMS Consensus sequence: SYTCTACWGAGTGYS

Best Matches for Motif ID 88 (Highest to Lowest)

Motif ID: UP00201
Motif name: Emx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.028571

Alignment:
WVVVCTAATTAGYBGHB
-SYTCTACWGAGTGYS-

Original motif Reverse complement motif
Consensus sequence: WVVVCTAATTAGYBGHB Consensus sequence: BHCBMCTAATTAGBVVW

Motif ID: UP00123
Motif name: Hlxb9
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0306813

Alignment:
BBASTAATTAGTGVHV
SYTCTACWGAGTGYS-

Original motif Reverse complement motif
Consensus sequence: BBASTAATTAGTGVHV Consensus sequence: VDVCACTAATTASTVB

Motif ID: UP00162
Motif name: Evx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0319373

Alignment:
WVHVCTAATTAGYBVDV
-SYTCTACWGAGTGYS-

Original motif Reverse complement motif
Consensus sequence: WVHVCTAATTAGYBVDV Consensus sequence: VDVBMCTAATTAGBHVW

Motif ID: UP00132
Motif name: Evx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0320303

Alignment:
WRBGCTAATTAGCRGBB
-SYTCTACWGAGTGYS-

Original motif Reverse complement motif
Consensus sequence: BVCMGCTAATTAGCBKW Consensus sequence: WRBGCTAATTAGCRGBB

Motif ID: UP00116
Motif name: Rhox6
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0322217

Alignment:
WVHVYTAATTARTBSDH
-SYTCTACWGAGTGYS-

Original motif Reverse complement motif
Consensus sequence: WVHVYTAATTARTBSDH Consensus sequence: DDSBAKTAATTAMVDVW

Dataset #: 1 Motif ID: 89 Motif name: C089

Original motif Reverse complement motif
Consensus sequence: YKCACTMYRDAGRCMR Consensus sequence: MRGKCTDMKYAGTGRK

Best Matches for Motif ID 89 (Highest to Lowest)

Motif ID: UP00132
Motif name: Evx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0412748

Alignment:
WRBGCTAATTAGCRGBB
MRGKCTDMKYAGTGRK-

Original motif Reverse complement motif
Consensus sequence: BVCMGCTAATTAGCBKW Consensus sequence: WRBGCTAATTAGCRGBB

Motif ID: UP00131
Motif name: Gbx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0424502

Alignment:
DVDVKCTAATTAGMVVD
-MRGKCTDMKYAGTGRK

Original motif Reverse complement motif
Consensus sequence: DVVRCTAATTAGYVDBD Consensus sequence: DVDVKCTAATTAGMVVD

Motif ID: UP00201
Motif name: Emx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0439615

Alignment:
WVVVCTAATTAGYBGHB
MRGKCTDMKYAGTGRK-

Original motif Reverse complement motif
Consensus sequence: WVVVCTAATTAGYBGHB Consensus sequence: BHCBMCTAATTAGBVVW

Motif ID: UP00184
Motif name: Lhx8
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0454659

Alignment:
CAHHGCTAATTAGVVVH
MRGKCTDMKYAGTGRK-

Original motif Reverse complement motif
Consensus sequence: HVVVCTAATTAGCDDTG Consensus sequence: CAHHGCTAATTAGVVVH

Motif ID: UP00084
Motif name: Gmeb1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0461544

Alignment:
DGVBCRACGTYGTYHH
YKCACTMYRDAGRCMR

Original motif Reverse complement motif
Consensus sequence: DGVBCRACGTYGTYHH Consensus sequence: HHMACKACGTMGBVCD

Dataset #: 1 Motif ID: 90 Motif name: C090

Original motif Reverse complement motif
Consensus sequence: WAAWWAAADWWWAW Consensus sequence: WTWWWDTTTWWTTW

Best Matches for Motif ID 90 (Highest to Lowest)

Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0393475

Alignment:
DDHBTTTTTTTTHDAVH
WTWWWDTTTWWTTW---

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH

Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0396489

Alignment:
HARTHAATTAWTAVDHD
WAAWWAAADWWWAW---

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0396638

Alignment:
HHVBYTTTTTTTTDDVV
WTWWWDTTTWWTTW---

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00097
Motif name: Mtf1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0432915

Alignment:
VDTHTTTHHTATDH
WTWWWDTTTWWTTW

Original motif Reverse complement motif
Consensus sequence: HDATAHDAAAHADV Consensus sequence: VDTHTTTHHTATDH

Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0464108

Alignment:
HDTYTTGTTWTKDDDT
-WTWWWDTTTWWTTW-

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT

Dataset #: 1 Motif ID: 91 Motif name: C091

Original motif Reverse complement motif
Consensus sequence: KMACTCAMKYTGTAKM Consensus sequence: YRTACAMRYTGAGTYY

Best Matches for Motif ID 91 (Highest to Lowest)

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 16
Similarity score: 0.0271799

Alignment:
YDYBDHTMCACGTGGADDBMDGT
----YRTACAMRYTGAGTYY---

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0333934

Alignment:
VMYDHDGMCCHCCKBGVVAAVH
YRTACAMRYTGAGTYY------

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH

Motif ID: UP00528
Motif name: Foxm1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0347276

Alignment:
HADTBVADGATGCATCMTGMVHB
KMACTCAMKYTGTAKM-------

Original motif Reverse complement motif
Consensus sequence: HADTBVADGATGCATCMTGMVHB Consensus sequence: VHVRCAYGATGCATCDTVVADTH

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 16
Similarity score: 0.0370054

Alignment:
VVYDDDCHCAVACAATTDBVAC
--YRTACAMRYTGAGTYY----

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00165
Motif name: Titf1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0386898

Alignment:
BVABCCACTTGAMHTT
KMACTCAMKYTGTAKM

Original motif Reverse complement motif
Consensus sequence: BVABCCACTTGAMHTT Consensus sequence: AAHYTCAAGTGGBTBV

Dataset #: 1 Motif ID: 92 Motif name: C092

Original motif Reverse complement motif
Consensus sequence: RYCAGRSTGGCSYCGARY Consensus sequence: KKTCGMSGCCASKCTGMM

Best Matches for Motif ID 92 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0336539

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
-----RYCAGRSTGGCSYCGARY

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0406327

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
--RYCAGRSTGGCSYCGARY--

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0436535

Alignment:
HDBABCGBKRGYGGCGMSBHAK
----RYCAGRSTGGCSYCGARY

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.0459987

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
----RYCAGRSTGGCSYCGARY-

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0476871

Alignment:
BTBVTCVTGGGTGGTCMVVDVBB
----RYCAGRSTGGCSYCGARY-

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Dataset #: 1 Motif ID: 93 Motif name: C093

Original motif Reverse complement motif
Consensus sequence: AKCCASMBSCCKSTGCMT Consensus sequence: ARGCASYGGSVYSTGGYT

Best Matches for Motif ID 93 (Highest to Lowest)

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0389257

Alignment:
BADHBDHCGCCCMCGCAHHDBBV
AKCCASMBSCCKSTGCMT-----

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0409936

Alignment:
VYWVVHCRCCACMCACGAHSBHH
---AKCCASMBSCCKSTGCMT--

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0442874

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
--AKCCASMBSCCKSTGCMT--

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0446823

Alignment:
DDRMHBACGCGYGCGTDGBBDB
ARGCASYGGSVYSTGGYT----

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD

Motif ID: UP00526
Motif name: Foxn1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.0463423

Alignment:
WHVBVVMACGCGCGTCDYHWDH
---ARGCASYGGSVYSTGGYT-

Original motif Reverse complement motif
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Consensus sequence: HDWHMHGACGCGCGTRBVVBHW

Dataset #: 1 Motif ID: 94 Motif name: C094

Original motif Reverse complement motif
Consensus sequence: SSHCCCSGCCCCSG Consensus sequence: CSGGGGCSGGGDSS

Best Matches for Motif ID 94 (Highest to Lowest)

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0170835

Alignment:
BHHBHCCGCCCCDHHHH
SSHCCCSGCCCCSG---

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0203409

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
---SSHCCCSGCCCCSG-----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0229345

Alignment:
HVDVGGGHGGGGDBHB
-CSGGGGCSGGGDSS-

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0239192

Alignment:
DHHDGGGCGRGGKHBH
-CSGGGGCSGGGDSS-

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0245603

Alignment:
HVBCCCCCCCCMHHHB
-SSHCCCSGCCCCSG-

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Dataset #: 1 Motif ID: 95 Motif name: C095

Original motif Reverse complement motif
Consensus sequence: KCCAKMSTGGTSKMCAGM Consensus sequence: RCTGYYSACCASYYTGGY

Best Matches for Motif ID 95 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0278633

Alignment:
VMYDHDGMCCHCCKBGVVAAVH
RCTGYYSACCASYYTGGY----

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0281669

Alignment:
HDBABCGBKRGYGGCGMSBHAK
RCTGYYSACCASYYTGGY----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.033095

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
----RCTGYYSACCASYYTGGY-

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 18
Similarity score: 0.036897

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
-----KCCAKMSTGGTSKMCAGM

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 18
Similarity score: 0.0379359

Alignment:
HGDHVHKGACCACCCGGBGBGDB
-RCTGYYSACCASYYTGGY----

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Dataset #: 1 Motif ID: 96 Motif name: C096

Original motif Reverse complement motif
Consensus sequence: MRMCMYGSCYRGCCYK Consensus sequence: RKGGCMMGSCKRGRKY

Best Matches for Motif ID 96 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 16
Similarity score: 0.0346607

Alignment:
HGDHVHKGACCACCCGGBGBGDB
-----RKGGCMMGSCKRGRKY--

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0356309

Alignment:
BHHBHCCGCCCCDHHHH
-MRMCMYGSCYRGCCYK

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 16
Similarity score: 0.0379898

Alignment:
HDBABCGBKRGYGGCGMSBHAK
--MRMCMYGSCYRGCCYK----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0407626

Alignment:
DHHBCCCCGCCAHHBHB
-MRMCMYGSCYRGCCYK

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD

Motif ID: UP00022
Motif name: Zfp740_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0416066

Alignment:
DDDTWCCCCCCGGDRVH
-RKGGCMMGSCKRGRKY

Original motif Reverse complement motif
Consensus sequence: DDDTWCCCCCCGGDRVH Consensus sequence: HVKDCCGGGGGGWADDD

Dataset #: 1 Motif ID: 97 Motif name: C097

Original motif Reverse complement motif
Consensus sequence: WBAASWWAAAAWWSAAVW Consensus sequence: WVTTSWWTTTTWWSTTBW

Best Matches for Motif ID 97 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.032986

Alignment:
WBHHHHHMDATTGTTHDHDVHH
---WVTTSWWTTTTWWSTTBW-

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 18
Similarity score: 0.0395253

Alignment:
HBHDVHDTCTTATCTHTDDHDV
WVTTSWWTTTTWWSTTBW----

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0483356

Alignment:
HHHBBMGATAVHATCWVVDHVH
----WBAASWWAAAAWWSAAVW

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0488925

Alignment:
VVYDDDCHCAVACAATTDBVAC
----WBAASWWAAAAWWSAAVW

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 18
Similarity score: 0.0549213

Alignment:
MWSMBAARRATGCDCABHATGD
-WBAASWWAAAAWWSAAVW---

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR

Dataset #: 1 Motif ID: 98 Motif name: C098

Original motif Reverse complement motif
Consensus sequence: AAAAWWAMAAWWAAWH Consensus sequence: HWTTWWTTYTWWTTTT

Best Matches for Motif ID 98 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0386561

Alignment:
VBDDAAAAAAAAMVBHH
-AAAAWWAMAAWWAAWH

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00051
Motif name: Sox8_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0410043

Alignment:
DDDHDAACAATWBATDD
AAAAWWAMAAWWAAWH-

Original motif Reverse complement motif
Consensus sequence: DDATBWATTGTTHHDDD Consensus sequence: DDDHDAACAATWBATDD

Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0419783

Alignment:
DBTHHAAAAAAAAVHDH
AAAAWWAMAAWWAAWH-

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH

Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0419915

Alignment:
HARTHAATTAWTAVDHD
AAAAWWAMAAWWAAWH-

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 16
Similarity score: 0.0430251

Alignment:
HHBDHDDAACAATDRHHHHHBW
--AAAAWWAMAAWWAAWH----

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Dataset #: 1 Motif ID: 99 Motif name: C099

Original motif Reverse complement motif
Consensus sequence: MYCCCMGCACTCKGGARK Consensus sequence: RKTCCRGAGTGCYGGGKR

Best Matches for Motif ID 99 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0318658

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
---RKTCCRGAGTGCYGGGKR--

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0366211

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
----MYCCCMGCACTCKGGARK

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0404912

Alignment:
BDVBCDACGCKCGCGTBHRKHD
--MYCCCMGCACTCKGGARK--

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0438598

Alignment:
MHHHWHYTMCCHCCCACVAABVH
---MYCCCMGCACTCKGGARK--

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0443498

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
---RKTCCRGAGTGCYGGGKR--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Dataset #: 1 Motif ID: 100 Motif name: C100

Original motif Reverse complement motif
Consensus sequence: WDWCSCTGTSTCHW Consensus sequence: WHGASACAGSGWDW

Best Matches for Motif ID 100 (Highest to Lowest)

Motif ID: UP00031
Motif name: Zbtb3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0211347

Alignment:
CHVTCACTGGBADHDD
-WDWCSCTGTSTCHW-

Original motif Reverse complement motif
Consensus sequence: CHVTCACTGGBADHDD Consensus sequence: DDHHTBCCAGTGABHG

Motif ID: UP00101
Motif name: Sox12_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0255389

Alignment:
HDTMCTTTGTSTVDBB
-WDWCSCTGTSTCHW-

Original motif Reverse complement motif
Consensus sequence: VVDBASACAAAGRADH Consensus sequence: HDTMCTTTGTSTVDBB

Motif ID: UP00210
Motif name: Mrg2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0263585

Alignment:
DBHTTGACAGSTVDTD
-WHGASACAGSGWDW-

Original motif Reverse complement motif
Consensus sequence: DADBASCTGTCAAHVH Consensus sequence: DBHTTGACAGSTVDTD

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 14
Similarity score: 0.0316143

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
---------WHGASACAGSGWDW

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Motif ID: UP00186
Motif name: Meis1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0316571

Alignment:
DBWTTGACAGSTBVTW
-WHGASACAGSGWDW-

Original motif Reverse complement motif
Consensus sequence: WAVBASCTGTCAAWVH Consensus sequence: DBWTTGACAGSTBVTW

Dataset #: 1 Motif ID: 101 Motif name: C101

Original motif Reverse complement motif
Consensus sequence: YTSCCTSKSVSTCCCAR Consensus sequence: MTGGGASVSYSAGGSAK

Best Matches for Motif ID 101 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 17
Similarity score: 0.0379768

Alignment:
VDWDARRGACGCGGWHGGAKHV
---MTGGGASVSYSAGGSAK--

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 17
Similarity score: 0.043481

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
-MTGGGASVSYSAGGSAK-----

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0446789

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
-----YTSCCTSKSVSTCCCAR

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 17
Similarity score: 0.0447452

Alignment:
DVTTVVCVYGGHGGYCHHDMYB
--YTSCCTSKSVSTCCCAR---

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 17
Similarity score: 0.0464938

Alignment:
BADHBDHCGCCCMCGCAHHDBBV
-MTGGGASVSYSAGGSAK-----

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Dataset #: 1 Motif ID: 102 Motif name: C102

Original motif Reverse complement motif
Consensus sequence: SCMCCSSSVCCMSS Consensus sequence: SSRGGVSSSGGYGS

Best Matches for Motif ID 102 (Highest to Lowest)

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0109986

Alignment:
DBCCCCCCCCCCMYC
-SCMCCSSSVCCMSS

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 14
Similarity score: 0.0204348

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
--SCMCCSSSVCCMSS------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0214073

Alignment:
VMYDHDGMCCHCCKBGVVAAVH
--------SCMCCSSSVCCMSS

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0236835

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
--------SCMCCSSSVCCMSS-

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.024744

Alignment:
HVBCCCCCCCCMHHHB
SCMCCSSSVCCMSS--

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Dataset #: 1 Motif ID: 103 Motif name: C103

Original motif Reverse complement motif
Consensus sequence: RRAGRAACCYTGYY Consensus sequence: MMCAMGGTTKCTKM

Best Matches for Motif ID 103 (Highest to Lowest)

Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 14
Similarity score: 0.0387119

Alignment:
HHHHDVVGTTGCTAHGGDHBAHH
-MMCAMGGTTKCTKM--------

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH

Motif ID: UP00036
Motif name: Myf6_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0405304

Alignment:
VVDBAACAGBTGBYHB
RRAGRAACCYTGYY--

Original motif Reverse complement motif
Consensus sequence: VVDBAACAGBTGBYHB Consensus sequence: BDKVCABCTGTTBDBV

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 14
Similarity score: 0.0407907

Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
----RRAGRAACCYTGYY-----

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Motif ID: UP00056
Motif name: Rfx4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0414662

Alignment:
HVVGTAWCKADGBHH
-MMCAMGGTTKCTKM

Original motif Reverse complement motif
Consensus sequence: HHBCHTRGWTACVVH Consensus sequence: HVVGTAWCKADGBHH

Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 14
Similarity score: 0.0421016

Alignment:
DDRMHBACGCGYGCGTDGBBDB
---MMCAMGGTTKCTKM-----

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD

Dataset #: 1 Motif ID: 104 Motif name: C104

Original motif Reverse complement motif
Consensus sequence: SSCCYCCCCDCCSS Consensus sequence: SSGGHGGGGKGGSS

Best Matches for Motif ID 104 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 14
Similarity score: 0.0212662

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
----SSCCYCCCCDCCSS----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0241093

Alignment:
BHHDYGGGGGGGGBVD
SSGGHGGGGKGGSS--

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0261421

Alignment:
DBCCCCCCCCCCMYC
SSCCYCCCCDCCSS-

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0264558

Alignment:
HBBBCCGCCCCWHHHV
--SSCCYCCCCDCCSS

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 14
Similarity score: 0.0275752

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-------SSCCYCCCCDCCSS--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Dataset #: 1 Motif ID: 105 Motif name: C105

Original motif Reverse complement motif
Consensus sequence: TGCCKMBSCCKMCCVA Consensus sequence: TVGGRYGGSBRRGGCA

Best Matches for Motif ID 105 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0398676

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
-TVGGRYGGSBRRGGCA------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 16
Similarity score: 0.0413056

Alignment:
HDBABCGBKRGYGGCGMSBHAK
--TVGGRYGGSBRRGGCA----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0445913

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
------TVGGRYGGSBRRGGCA-

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0479431

Alignment:
BADHBDHCGCCCMCGCAHHDBBV
-TGCCKMBSCCKMCCVA------

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0484323

Alignment:
BHBHDTGGCGGGGBDHD
TVGGRYGGSBRRGGCA-

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD

Dataset #: 1 Motif ID: 106 Motif name: C106

Original motif Reverse complement motif
Consensus sequence: MSGCAGWGGCASK Consensus sequence: RSTGCCWCTGCSY

Best Matches for Motif ID 106 (Highest to Lowest)

Motif ID: UP00031
Motif name: Zbtb3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0221156

Alignment:
BBBAVTGCAGTGBBVDD
RSTGCCWCTGCSY----

Original motif Reverse complement motif
Consensus sequence: DDBBBCACTGCABTBBB Consensus sequence: BBBAVTGCAGTGBBVDD

Motif ID: UP00010
Motif name: Tcfap2b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.026668

Alignment:
HHKGCCYSRGGCWAD
RSTGCCWCTGCSY--

Original motif Reverse complement motif
Consensus sequence: DTWGCCKSMGGCRHH Consensus sequence: HHKGCCYSRGGCWAD

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0273606

Alignment:
VDWDARRGACGCGGWHGGAKHV
--------MSGCAGWGGCASK-

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Motif ID: UP00031
Motif name: Zbtb3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0282689

Alignment:
DDHHTBCCAGTGABHG
--RSTGCCWCTGCSY-

Original motif Reverse complement motif
Consensus sequence: CHVTCACTGGBADHDD Consensus sequence: DDHHTBCCAGTGABHG

Motif ID: UP00036
Motif name: Myf6_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0289018

Alignment:
GGDGBGVCTGTKVVB
RSTGCCWCTGCSY--

Original motif Reverse complement motif
Consensus sequence: VVVRACAGVCBCDCC Consensus sequence: GGDGBGVCTGTKVVB

Dataset #: 1 Motif ID: 107 Motif name: C107

Original motif Reverse complement motif
Consensus sequence: CHBBCCTYBAABCCCDG Consensus sequence: CDGGGBTTVMAGGVBHG

Best Matches for Motif ID 107 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 17
Similarity score: 0.0580885

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-CDGGGBTTVMAGGVBHG----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0584165

Alignment:
MHHHWHYTMCCHCCCACVAABVH
CHBBCCTYBAABCCCDG------

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 17
Similarity score: 0.0604761

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
--CHBBCCTYBAABCCCDG----

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 17
Similarity score: 0.0618639

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
----CHBBCCTYBAABCCCDG--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 17
Similarity score: 0.0669075

Alignment:
VYWVVHCRCCACMCACGAHSBHH
----CHBBCCTYBAABCCCDG--

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Dataset #: 1 Motif ID: 108 Motif name: C108

Original motif Reverse complement motif
Consensus sequence: RBACWGASAWASVY Consensus sequence: MVSTWTSTCWGTBK

Best Matches for Motif ID 108 (Highest to Lowest)

Motif ID: UP00101
Motif name: Sox12_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0263171

Alignment:
HDTMCTTTGTSTVDBB
--MVSTWTSTCWGTBK

Original motif Reverse complement motif
Consensus sequence: VVDBASACAAAGRADH Consensus sequence: HDTMCTTTGTSTVDBB

Motif ID: UP00018
Motif name: Irf4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0315601

Alignment:
VVBAYTCTCGGWHDB
MVSTWTSTCWGTBK-

Original motif Reverse complement motif
Consensus sequence: VVBAYTCTCGGWHDB Consensus sequence: BHHWCCGAGAMTVVB

Motif ID: >UP00011
Motif name: Irf6_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0320561

Alignment:
VDDRCCGMGAGTBBB
-RBACWGASAWASVY

Original motif Reverse complement motif
Consensus sequence: VBBACTCYCGGKHDV Consensus sequence: VDDRCCGMGAGTBBB

Motif ID: UP00073
Motif name: Foxa2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0348659

Alignment:
VVDAATAACAAAVVB
-RBACWGASAWASVY

Original motif Reverse complement motif
Consensus sequence: VVDAATAACAAAVVB Consensus sequence: BVVTTTGTTATTDBB

Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0352792

Alignment:
HVHBVTGTCTGGDDHDD
MVSTWTSTCWGTBK---

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD

Dataset #: 1 Motif ID: 109 Motif name: C109

Original motif Reverse complement motif
Consensus sequence: RMCWSGCTGSCCKY Consensus sequence: MRGGSCAGCSWGRK

Best Matches for Motif ID 109 (Highest to Lowest)

Motif ID: UP00006
Motif name: Zic3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0232278

Alignment:
DDDCACAGCAKGHVD
MRGGSCAGCSWGRK-

Original motif Reverse complement motif
Consensus sequence: DDDCACAGCAKGHVD Consensus sequence: DVHCYTGCTGTGHDH

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 14
Similarity score: 0.0232672

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
----MRGGSCAGCSWGRK-----

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0233983

Alignment:
VBBDMYCATCTGVHHBH
---RMCWSGCTGSCCKY

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH

Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0243539

Alignment:
HTBVVVDGGACCACCCRGRDBG
------MRGGSCAGCSWGRK--

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH

Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.024667

Alignment:
HHDCVCAGCAKGVVD
MRGGSCAGCSWGRK-

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD

Dataset #: 1 Motif ID: 110 Motif name: C110

Original motif Reverse complement motif
Consensus sequence: YYCTKTCTCMAARR Consensus sequence: KKTTRGAGAYAGKM

Best Matches for Motif ID 110 (Highest to Lowest)

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.030626

Alignment:
BDHDDADAGATAAGADHBDHVD
-KKTTRGAGAYAGKM-------

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00043
Motif name: Bcl6b_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0328671

Alignment:
VHHATTCCTYGAAAGD
-YYCTKTCTCMAARR-

Original motif Reverse complement motif
Consensus sequence: DCTTTCKAGGAATHHV Consensus sequence: VHHATTCCTYGAAAGD

Motif ID: UP00076
Motif name: Rfxdc2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0362358

Alignment:
BBVCDTRGAKACSVDDH
--KKTTRGAGAYAGKM-

Original motif Reverse complement motif
Consensus sequence: BBVCDTRGAKACSVDDH Consensus sequence: HDDVSGTRTCMADGBVB

Motif ID: UP00101
Motif name: Sox12_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0396775

Alignment:
HDTMCTTTGTSTVDBB
--YYCTKTCTCMAARR

Original motif Reverse complement motif
Consensus sequence: VVDBASACAAAGRADH Consensus sequence: HDTMCTTTGTSTVDBB

Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0396815

Alignment:
HBHDVBWGATHBTATCRVBHHH
KKTTRGAGAYAGKM--------

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH

Dataset #: 1 Motif ID: 111 Motif name: C111

Original motif Reverse complement motif
Consensus sequence: TBATWYCTGARWTCSM Consensus sequence: YSGAWKTCAGMWATBA

Best Matches for Motif ID 111 (Highest to Lowest)

Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0382144

Alignment:
DMTWDGTCAGCADWTTH
YSGAWKTCAGMWATBA-

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH

Motif ID: UP00410
Motif name: Elk1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0436521

Alignment:
VVHBACCGGAAGTDBHD
TBATWYCTGARWTCSM-

Original motif Reverse complement motif
Consensus sequence: VVHBACCGGAAGTDBHD Consensus sequence: DHBDACTTCCGGTVHVB

Motif ID: UP00013
Motif name: Gabpa_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0439267

Alignment:
HVHHACCGGAAGTDHHV
TBATWYCTGARWTCSM-

Original motif Reverse complement motif
Consensus sequence: HVHHACCGGAAGTDHHV Consensus sequence: BHHHACTTCCGGTHHBD

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 16
Similarity score: 0.0485736

Alignment:
BDHDDADAGATAAGADHBDHVD
----YSGAWKTCAGMWATBA--

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00193
Motif name: Rhox11_1765.2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0486964

Alignment:
WVVHWTWACAGCGBHBT
-YSGAWKTCAGMWATBA

Original motif Reverse complement motif
Consensus sequence: AVDVCGCTGTWAWDVVW Consensus sequence: WVVHWTWACAGCGBHBT

Dataset #: 1 Motif ID: 112 Motif name: C112

Original motif Reverse complement motif
Consensus sequence: CCBCYSSSGCCCCSS Consensus sequence: SSGGGGCSSSKGBGG

Best Matches for Motif ID 112 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 15
Similarity score: 0.0368115

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
SSGGGGCSSSKGBGG--------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 15
Similarity score: 0.038423

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
--CCBCYSSSGCCCCSS-----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0430481

Alignment:
HHHHDGGGGCGGDBHDV
--SSGGGGCSSSKGBGG

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0450061

Alignment:
BHVDCCCCDCCCBDBH
CCBCYSSSGCCCCSS-

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0460082

Alignment:
HVBCCCCCCCCMHHHB
CCBCYSSSGCCCCSS-

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Dataset #: 1 Motif ID: 113 Motif name: C113

Original motif Reverse complement motif
Consensus sequence: CHCCSCSVSCCCC Consensus sequence: GGGGSVSGSGGDG

Best Matches for Motif ID 113 (Highest to Lowest)

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0317901

Alignment:
DBCCCCCCCCCCMYC
-CHCCSCSVSCCCC-

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0384426

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
-GGGGSVSGSGGDG---------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0386858

Alignment:
HDBABCGBKRGYGGCGMSBHAK
GGGGSVSGSGGDG---------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 13
Similarity score: 0.0387928

Alignment:
DVVTTVGTGGGHGGYAMHWHHHY
GGGGSVSGSGGDG----------

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0424015

Alignment:
HVBCCCCCCCCMHHHB
---CHCCSCSVSCCCC

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Dataset #: 1 Motif ID: 114 Motif name: C114

Original motif Reverse complement motif
Consensus sequence: SRARCCMKGTCTYS Consensus sequence: SMAGACRRGGMTKS

Best Matches for Motif ID 114 (Highest to Lowest)

Motif ID: UP00082
Motif name: Zfp187_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0219685

Alignment:
DDGMCCTBGTCCHYHV
SRARCCMKGTCTYS--

Original motif Reverse complement motif
Consensus sequence: DDGMCCTBGTCCHYHV Consensus sequence: VHMDGGACVAGGRCDH

Motif ID: UP00002
Motif name: Sp4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0320328

Alignment:
BDWAGGCGTGBCHHD
-SMAGACRRGGMTKS

Original motif Reverse complement motif
Consensus sequence: BDWAGGCGTGBCHHD Consensus sequence: HHDGBCACGCCTWDB

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0320453

Alignment:
HBDRCCMCGCCCHHHD
SRARCCMKGTCTYS--

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0338574

Alignment:
BBHBGAGTGGGAHHDB
-SMAGACRRGGMTKS-

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV

Motif ID: UP00009
Motif name: Nr2f2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0350465

Alignment:
VBVBCSGGGTCAVBBH
SRARCCMKGTCTYS--

Original motif Reverse complement motif
Consensus sequence: VBVBCSGGGTCAVBBH Consensus sequence: HVBVTGACCCSGBVBV

Dataset #: 1 Motif ID: 115 Motif name: C115

Original motif Reverse complement motif
Consensus sequence: MDRGKGSTGGGHK Consensus sequence: RHCCCASCRCKDY

Best Matches for Motif ID 115 (Highest to Lowest)

Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0107043

Alignment:
HVDVGGGHGGGGDBHB
-MDRGKGSTGGGHK--

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0119418

Alignment:
BHHHWGGGGCGGBBVH
--MDRGKGSTGGGHK-

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH

Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0142708

Alignment:
DHHBCCCCGCCAHHBHB
---RHCCCASCRCKDY-

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0145702

Alignment:
HHHHDGGGGCGGDBHDV
--MDRGKGSTGGGHK--

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00002
Motif name: Sp4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0200599

Alignment:
BDWAGGCGTGBCHHD
-MDRGKGSTGGGHK-

Original motif Reverse complement motif
Consensus sequence: BDWAGGCGTGBCHHD Consensus sequence: HHDGBCACGCCTWDB

Dataset #: 1 Motif ID: 116 Motif name: C116

Original motif Reverse complement motif
Consensus sequence: WWMAWACACWMAWW Consensus sequence: WWTRWGTGTWTRWW

Best Matches for Motif ID 116 (Highest to Lowest)

Motif ID: UP00055
Motif name: Hbp1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0242601

Alignment:
HHDWTSAATGAATDDB
WWMAWACACWMAWW--

Original motif Reverse complement motif
Consensus sequence: HHDWTSAATGAATDDB Consensus sequence: VDHATTCATTSAWDDH

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.02629

Alignment:
DWAATRTAAACAAWVVB
WWMAWACACWMAWW---

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 14
Similarity score: 0.0267723

Alignment:
GTVBDAATTGTVTGHGDDHKVB
------WWTRWGTGTWTRWW--

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00228
Motif name: Bapx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0270117

Alignment:
DTBVTTAAGTGGTTHHV
---WWTRWGTGTWTRWW

Original motif Reverse complement motif
Consensus sequence: VHHAACCACTTAAVVAH Consensus sequence: DTBVTTAAGTGGTTHHV

Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0271642

Alignment:
HDYAAAHAAMAADHD
WWMAWACACWMAWW-

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH

Dataset #: 1 Motif ID: 117 Motif name: C117

Original motif Reverse complement motif
Consensus sequence: CMCWRSCTGYCCKG Consensus sequence: CYGGKCAGSKWGYG

Best Matches for Motif ID 117 (Highest to Lowest)

Motif ID: UP00031
Motif name: Zbtb3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.023372

Alignment:
DDHHTBCCAGTGABHG
--CYGGKCAGSKWGYG

Original motif Reverse complement motif
Consensus sequence: CHVTCACTGGBADHDD Consensus sequence: DDHHTBCCAGTGABHG

Motif ID: UP00092
Motif name: Myb_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0238724

Alignment:
DBVKGGCAGTTGGTHB
-CYGGKCAGSKWGYG-

Original motif Reverse complement motif
Consensus sequence: BDACCAACTGCCRBBH Consensus sequence: DBVKGGCAGTTGGTHB

Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0250247

Alignment:
HHDCVCAGCAKGVVD
CYGGKCAGSKWGYG-

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD

Motif ID: UP00081
Motif name: Mybl1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0262709

Alignment:
BHCGGCAGTTGGBBB
CYGGKCAGSKWGYG-

Original motif Reverse complement motif
Consensus sequence: BBVCCAACTGCCGHB Consensus sequence: BHCGGCAGTTGGBBB

Motif ID: UP00006
Motif name: Zic3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0274658

Alignment:
DVHCYTGCTGTGHDH
-CMCWRSCTGYCCKG

Original motif Reverse complement motif
Consensus sequence: DDDCACAGCAKGHVD Consensus sequence: DVHCYTGCTGTGHDH

Dataset #: 1 Motif ID: 118 Motif name: C118

Original motif Reverse complement motif
Consensus sequence: GMCTGCSWSTGCCKC Consensus sequence: GRGGCASWSGCAGYC

Best Matches for Motif ID 118 (Highest to Lowest)

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 15
Similarity score: 0.0439545

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
---GMCTGCSWSTGCCKC-----

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 15
Similarity score: 0.0446432

Alignment:
VHYTCCDWCCGCGTCMMTHWHV
GMCTGCSWSTGCCKC-------

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Motif ID: UP00031
Motif name: Zbtb3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0451734

Alignment:
CHVTCACTGGBADHDD
-GMCTGCSWSTGCCKC

Original motif Reverse complement motif
Consensus sequence: CHVTCACTGGBADHDD Consensus sequence: DDHHTBCCAGTGABHG

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 15
Similarity score: 0.0458009

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
---GMCTGCSWSTGCCKC-----

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00414
Motif name: Ets1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.0501418

Alignment:
BDDDHACCGGAARTVDD
GRGGCASWSGCAGYC--

Original motif Reverse complement motif
Consensus sequence: BDDDHACCGGAARTVDD Consensus sequence: DDBAMTTCCGGTDHDHB

Dataset #: 1 Motif ID: 119 Motif name: C119

Original motif Reverse complement motif
Consensus sequence: SWRTYCCAGRACWS Consensus sequence: SWGTMCTGGKAKWS

Best Matches for Motif ID 119 (Highest to Lowest)

Motif ID: UP00031
Motif name: Zbtb3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0288751

Alignment:
CHVTCACTGGBADHDD
-SWGTMCTGGKAKWS-

Original motif Reverse complement motif
Consensus sequence: CHVTCACTGGBADHDD Consensus sequence: DDHHTBCCAGTGABHG

Motif ID: UP00040
Motif name: Irf5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0294274

Alignment:
BHDAHCGAGARTHBV
SWRTYCCAGRACWS-

Original motif Reverse complement motif
Consensus sequence: BHDAHCGAGARTHBV Consensus sequence: VBHAKTCTCGHTHHV

Motif ID: UP00019
Motif name: Zbtb12_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.031753

Alignment:
BDHRBGTTCTAGATCVB
---SWRTYCCAGRACWS

Original motif Reverse complement motif
Consensus sequence: BDHRBGTTCTAGATCVB Consensus sequence: BBGATCTAGAACBKHDB

Motif ID: UP00018
Motif name: Irf4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0323112

Alignment:
BHHWCCGAGAMTVVB
SWRTYCCAGRACWS-

Original motif Reverse complement motif
Consensus sequence: VVBAYTCTCGGWHDB Consensus sequence: BHHWCCGAGAMTVVB

Motif ID: UP00203
Motif name: Pknox1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0328626

Alignment:
VVWTTGACAGSTSBKD
-SWRTYCCAGRACWS-

Original motif Reverse complement motif
Consensus sequence: DRVSASCTGTCAAWVV Consensus sequence: VVWTTGACAGSTSBKD

Dataset #: 1 Motif ID: 120 Motif name: C120

Original motif Reverse complement motif
Consensus sequence: TGARACMSKGTYTCA Consensus sequence: TGAMACRSYGTKTCA

Best Matches for Motif ID 120 (Highest to Lowest)

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 15
Similarity score: 0.0456935

Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
------TGARACMSKGTYTCA--

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Motif ID: UP00036
Motif name: Myf6_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.049534

Alignment:
GGDGBGVCTGTKVVB
TGAMACRSYGTKTCA

Original motif Reverse complement motif
Consensus sequence: VVVRACAGVCBCDCC Consensus sequence: GGDGBGVCTGTKVVB

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 15
Similarity score: 0.0503421

Alignment:
VMYDHDGMCCHCCKBGVVAAVH
----TGAMACRSYGTKTCA---

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 15
Similarity score: 0.0525165

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
------TGARACMSKGTYTCA-

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00059
Motif name: Arid5a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0539819

Alignment:
BDYDVAATACGADDBVV
--TGARACMSKGTYTCA

Original motif Reverse complement motif
Consensus sequence: BDYDVAATACGADDBVV Consensus sequence: BBVDDTCGTATTVDMHB

Dataset #: 1 Motif ID: 121 Motif name: C121

Original motif Reverse complement motif
Consensus sequence: MRCCCTRGCYSTCCYK Consensus sequence: RKGGASMGCKAGGGMY

Best Matches for Motif ID 121 (Highest to Lowest)

Motif ID: UP00526
Motif name: Foxn1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 16
Similarity score: 0.0432795

Alignment:
WHVBVVMACGCGCGTCDYHWDH
--RKGGASMGCKAGGGMY----

Original motif Reverse complement motif
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Consensus sequence: HDWHMHGACGCGCGTRBVVBHW

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0435346

Alignment:
HDBABCGBKRGYGGCGMSBHAK
------RKGGASMGCKAGGGMY

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.043859

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
-MRCCCTRGCYSTCCYK-----

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 16
Similarity score: 0.0450464

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
---MRCCCTRGCYSTCCYK----

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0451554

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-------RKGGASMGCKAGGGMY

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Dataset #: 1 Motif ID: 122 Motif name: C122

Original motif Reverse complement motif
Consensus sequence: YAGCCCWGSCWSBCCTR Consensus sequence: MAGGVSWGSCWGGGCTK

Best Matches for Motif ID 122 (Highest to Lowest)

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 17
Similarity score: 0.0374003

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
MAGGVSWGSCWGGGCTK------

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 17
Similarity score: 0.0431179

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
----YAGCCCWGSCWSBCCTR--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 17
Similarity score: 0.0445547

Alignment:
YBVDMGTGGGTGGTCKVVBVBBT
MAGGVSWGSCWGGGCTK------

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 17
Similarity score: 0.0459573

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-----MAGGVSWGSCWGGGCTK

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 17
Similarity score: 0.0473282

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
--YAGCCCWGSCWSBCCTR----

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Dataset #: 1 Motif ID: 123 Motif name: C123

Original motif Reverse complement motif
Consensus sequence: GAAMTCWGAAATC Consensus sequence: GATTTCWGARTTC

Best Matches for Motif ID 123 (Highest to Lowest)

Motif ID: UP00015
Motif name: Ehf_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 13
Similarity score: 0.0397393

Alignment:
WDVDABTTCCKAHSDW
---GATTTCWGARTTC

Original motif Reverse complement motif
Consensus sequence: WDVDABTTCCKAHSDW Consensus sequence: WDSHTYGGAAVTDVDW

Motif ID: UP00409
Motif name: Elf5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0411525

Alignment:
BWAHSMGGAAGTWD
GAAMTCWGAAATC-

Original motif Reverse complement motif
Consensus sequence: BWAHSMGGAAGTWD Consensus sequence: DWACTTCCRSDTWV

Motif ID: UP00015
Motif name: Ehf_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0417179

Alignment:
VBDABCCGGAAGTDD
-GAAMTCWGAAATC-

Original motif Reverse complement motif
Consensus sequence: VBDABCCGGAAGTDD Consensus sequence: DDACTTCCGGBTHBB

Motif ID: UP00413
Motif name: Elf4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 13
Similarity score: 0.0418022

Alignment:
DBBHACTTCCGGKWTH
---GATTTCWGARTTC

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGKWTH Consensus sequence: HAWYCCGGAAGTHBBD

Motif ID: UP00418
Motif name: Etv6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 13
Similarity score: 0.0418622

Alignment:
BHAHCCGGAAGTABDVD
GAAMTCWGAAATC----

Original motif Reverse complement motif
Consensus sequence: DVHBTACTTCCGGHTHB Consensus sequence: BHAHCCGGAAGTABDVD

Dataset #: 1 Motif ID: 124 Motif name: C124

Original motif Reverse complement motif
Consensus sequence: WSACSRSGCTGSYSTCSW Consensus sequence: WSGASKSCAGCSMSGTSW

Best Matches for Motif ID 124 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0329213

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
--WSGASKSCAGCSMSGTSW---

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0329451

Alignment:
MWSMBAARRATGCDCABHATGD
-WSACSRSGCTGSYSTCSW---

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR

Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0351741

Alignment:
BDVBCDACGCKCGCGTBHRKHD
-WSACSRSGCTGSYSTCSW---

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0362523

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
--WSGASKSCAGCSMSGTSW--

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00526
Motif name: Foxn1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0378518

Alignment:
WHVBVVMACGCGCGTCDYHWDH
--WSACSRSGCTGSYSTCSW--

Original motif Reverse complement motif
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Consensus sequence: HDWHMHGACGCGCGTRBVVBHW

Dataset #: 1 Motif ID: 125 Motif name: C125

Original motif Reverse complement motif
Consensus sequence: SKASWYASAGRWASMS Consensus sequence: SYSTWKCTSTMWSTRS

Best Matches for Motif ID 125 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 16
Similarity score: 0.0304657

Alignment:
GTVBDAATTGTVTGHGDDHKVB
-SYSTWKCTSTMWSTRS-----

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00122
Motif name: Tgif1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.033763

Alignment:
DBVVAGCTGTCAWWVTH
SYSTWKCTSTMWSTRS-

Original motif Reverse complement motif
Consensus sequence: DABWWTGACAGCTVVBD Consensus sequence: DBVVAGCTGTCAWWVTH

Motif ID: UP00014
Motif name: Sox17_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0342041

Alignment:
VHBHHCATTCATRHVDD
SKASWYASAGRWASMS-

Original motif Reverse complement motif
Consensus sequence: VHBHHCATTCATRHVDD Consensus sequence: DDBDKATGAATGHDBHV

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0346406

Alignment:
VBDDAAAAAAAAMVBHH
SKASWYASAGRWASMS-

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00084
Motif name: Gmeb1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0359108

Alignment:
BHBBKKACGTMMVDBVB
-SKASWYASAGRWASMS

Original motif Reverse complement motif
Consensus sequence: BHBBKKACGTMMVDBVB Consensus sequence: BVVDVRYACGTRYVBHB

Dataset #: 1 Motif ID: 126 Motif name: C126

Original motif Reverse complement motif
Consensus sequence: SVWGRCSMKSCTGGYS Consensus sequence: SMCCAGSYYSGMCWBS

Best Matches for Motif ID 126 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0246313

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
SVWGRCSMKSCTGGYS------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0257483

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
------SMCCAGSYYSGMCWBS-

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 16
Similarity score: 0.0279168

Alignment:
VMYDHDGMCCHCCKBGVVAAVH
--SVWGRCSMKSCTGGYS----

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH

Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 16
Similarity score: 0.0307173

Alignment:
DVMHHDHKGACCCTCCTSVCBH
-----SVWGRCSMKSCTGGYS-

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 16
Similarity score: 0.0329173

Alignment:
HGDHVHKGACCACCCGGBGBGDB
----SVWGRCSMKSCTGGYS---

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Dataset #: 1 Motif ID: 127 Motif name: C127

Original motif Reverse complement motif
Consensus sequence: CKCCYYTHATCCCMG Consensus sequence: CYGGGATHAMMGGRG

Best Matches for Motif ID 127 (Highest to Lowest)

Motif ID: UP00219
Motif name: Cutl1_3494.1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0320609

Alignment:
DBWSDTKATCAAVCGGT
--CYGGGATHAMMGGRG

Original motif Reverse complement motif
Consensus sequence: ACCGVTTGATYAHSWBD Consensus sequence: DBWSDTKATCAAVCGGT

Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0338391

Alignment:
VDDAGATCAAAGGKDDD
CYGGGATHAMMGGRG--

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD

Motif ID: UP00014
Motif name: Sox17_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.0345074

Alignment:
DDBDKATGAATGHDBHV
CYGGGATHAMMGGRG--

Original motif Reverse complement motif
Consensus sequence: VHBHHCATTCATRHVDD Consensus sequence: DDBDKATGAATGHDBHV

Motif ID: UP00058
Motif name: Tcf3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0345461

Alignment:
HHHKVCTTTGATSTHHH
CYGGGATHAMMGGRG--

Original motif Reverse complement motif
Consensus sequence: HHHASATCAAAGVRHHH Consensus sequence: HHHKVCTTTGATSTHHH

Motif ID: UP00083
Motif name: Tcf7l2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.0348977

Alignment:
BDDASATCAAAGGMDDD
CYGGGATHAMMGGRG--

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATSTDDV Consensus sequence: BDDASATCAAAGGMDDD

Dataset #: 1 Motif ID: 128 Motif name: C128

Original motif Reverse complement motif
Consensus sequence: SYCTSRSTGTCSYSGARS Consensus sequence: SKTCSMSGACASKSAGMS

Best Matches for Motif ID 128 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0345039

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
-----SYCTSRSTGTCSYSGARS

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0355993

Alignment:
HDBABCGBKRGYGGCGMSBHAK
----SYCTSRSTGTCSYSGARS

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 18
Similarity score: 0.040905

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
-----SYCTSRSTGTCSYSGARS

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 18
Similarity score: 0.0416039

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
-----SYCTSRSTGTCSYSGARS

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0436679

Alignment:
VDWDARRGACGCGGWHGGAKHV
SKTCSMSGACASKSAGMS----

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Dataset #: 1 Motif ID: 129 Motif name: C129

Original motif Reverse complement motif
Consensus sequence: KKGCTAYRYRGAGAMM Consensus sequence: RRTCTCKKMMTAGCRY

Best Matches for Motif ID 129 (Highest to Lowest)

Motif ID: UP00131
Motif name: Gbx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0195892

Alignment:
DVDVKCTAATTAGMVVD
RRTCTCKKMMTAGCRY-

Original motif Reverse complement motif
Consensus sequence: DVVRCTAATTAGYVDBD Consensus sequence: DVDVKCTAATTAGMVVD

Motif ID: UP00136
Motif name: Prrx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0328703

Alignment:
DDDHKCTAATTAGCHBT
RRTCTCKKMMTAGCRY-

Original motif Reverse complement motif
Consensus sequence: AVHGCTAATTAGYDDDD Consensus sequence: DDDHKCTAATTAGCHBT

Motif ID: UP00132
Motif name: Evx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0356184

Alignment:
BVCMGCTAATTAGCBKW
RRTCTCKKMMTAGCRY-

Original motif Reverse complement motif
Consensus sequence: BVCMGCTAATTAGCBKW Consensus sequence: WRBGCTAATTAGCRGBB

Motif ID: UP00211
Motif name: Pou3f3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0360591

Alignment:
HADDTATGCATAATDDA
-KKGCTAYRYRGAGAMM

Original motif Reverse complement motif
Consensus sequence: HADDTATGCATAATDDA Consensus sequence: TDDATTATGCATADDTH

Motif ID: UP00178
Motif name: Og2x
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0365623

Alignment:
BHDHBMKAATTMKVVCG
RRTCTCKKMMTAGCRY-

Original motif Reverse complement motif
Consensus sequence: CGVVYYAATTRRBHDHB Consensus sequence: BHDHBMKAATTMKVVCG

Dataset #: 1 Motif ID: 130 Motif name: C130

Original motif Reverse complement motif
Consensus sequence: TKCCWGGVCWGCMA Consensus sequence: TRGCWGBCCWGGYA

Best Matches for Motif ID 130 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 14
Similarity score: 0.0417596

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-TKCCWGGVCWGCMA--------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0438533

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
------TKCCWGGVCWGCMA---

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0449212

Alignment:
HHHHDVVGTTGCTAHGGDHBAHH
TRGCWGBCCWGGYA---------

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0463369

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-------TKCCWGGVCWGCMA-

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 14
Similarity score: 0.0472891

Alignment:
YBVDMGTGGGTGGTCKVVBVBBT
------TRGCWGBCCWGGYA---

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT

Dataset #: 1 Motif ID: 131 Motif name: C131

Original motif Reverse complement motif
Consensus sequence: WWAADAARVHAAWW Consensus sequence: WWTTHBKTTDTTWW

Best Matches for Motif ID 131 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0256716

Alignment:
VBDDAAAAAAAAMVBHH
--WWAADAARVHAAWW-

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0279274

Alignment:
HDTYTTGTTWTKDDDT
WWTTHBKTTDTTWW--

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT

Motif ID: UP00028
Motif name: Tcfap2e_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0294273

Alignment:
HDCDBRAAAAAADD
WWAADAARVHAAWW

Original motif Reverse complement motif
Consensus sequence: HDCDBRAAAAAADD Consensus sequence: DDTTTTTTMBDGDH

Motif ID: UP00014
Motif name: Sox17_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0331143

Alignment:
DDWTBAATTGTTDDB
WWTTHBKTTDTTWW-

Original motif Reverse complement motif
Consensus sequence: VDDAACAATTVAWHD Consensus sequence: DDWTBAATTGTTDDB

Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0331856

Alignment:
HHHTTRTTDTTTKDH
-WWTTHBKTTDTTWW

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH

Dataset #: 1 Motif ID: 132 Motif name: C132

Original motif Reverse complement motif
Consensus sequence: WCAGRGWGAGAWCYAGGW Consensus sequence: WCCTKGWTCTCWCMCTGW

Best Matches for Motif ID 132 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0464813

Alignment:
VVYDDDCHCAVACAATTDBVAC
WCCTKGWTCTCWCMCTGW----

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 18
Similarity score: 0.0491336

Alignment:
HVGVSAGGAGGGTCYHHHHYVH
-WCAGRGWGAGAWCYAGGW---

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH

Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0511816

Alignment:
DCATDBTGHGCATKMTTBRSWR
WCCTKGWTCTCWCMCTGW----

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0524801

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
--WCAGRGWGAGAWCYAGGW---

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.0525963

Alignment:
DVTTVVCVYGGHGGYCHHDMYB
---WCAGRGWGAGAWCYAGGW-

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH

Dataset #: 1 Motif ID: 133 Motif name: C133

Original motif Reverse complement motif
Consensus sequence: AWMAWHDACACHRWMAW Consensus sequence: WTYWKHGTGTDHWTRWT

Best Matches for Motif ID 133 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 17
Similarity score: 0.039607

Alignment:
VYWVVHCRCCACMCACGAHSBHH
-AWMAWHDACACHRWMAW-----

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 17
Similarity score: 0.0412538

Alignment:
WBHHHHHMDATTGTTHDHDVHH
----WTYWKHGTGTDHWTRWT-

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00039
Motif name: Foxj3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0441279

Alignment:
DVHWDTGTTWTGDTBDH
WTYWKHGTGTDHWTRWT

Original motif Reverse complement motif
Consensus sequence: HDBAHCAWAACADWDVD Consensus sequence: DVHWDTGTTWTGDTBDH

Motif ID: UP00119
Motif name: Nkx2-9
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0448373

Alignment:
TTTDAAGTACTTVAADH
WTYWKHGTGTDHWTRWT

Original motif Reverse complement motif
Consensus sequence: TTTDAAGTACTTVAADH Consensus sequence: HDTTBAAGTACTTDAAA

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 17
Similarity score: 0.0454758

Alignment:
GTVBDAATTGTVTGHGDDHKVB
-WTYWKHGTGTDHWTRWT----

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Dataset #: 1 Motif ID: 134 Motif name: C134

Original motif Reverse complement motif
Consensus sequence: CCBCCCCSCCC Consensus sequence: GGGSGGGGBGG

Best Matches for Motif ID 134 (Highest to Lowest)

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.00418064

Alignment:
GKRGGGGGGGGGGBD
----GGGSGGGGBGG

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0057444

Alignment:
BHHDYGGGGGGGGBVD
-----GGGSGGGGBGG

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0142081

Alignment:
DHHBCCCCGCCAHHBHB
-CCBCCCCSCCC-----

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0188242

Alignment:
HBBBCCGCCCCWHHHV
CCBCCCCSCCC-----

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0189121

Alignment:
HHHHDGGGGCGGDBHDV
------GGGSGGGGBGG

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Dataset #: 1 Motif ID: 135 Motif name: C135

Original motif Reverse complement motif
Consensus sequence: KKCCKAGMACBMASMM Consensus sequence: RYSTYVGTYCTYGGRY

Best Matches for Motif ID 135 (Highest to Lowest)

Motif ID: UP00390
Motif name: Tcf1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0428575

Alignment:
VDDTTAGTTAACBVRSD
RYSTYVGTYCTYGGRY-

Original motif Reverse complement motif
Consensus sequence: HSKBVGTTAACTAADDB Consensus sequence: VDDTTAGTTAACBVRSD

Motif ID: UP00389
Motif name: Nkx3-1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0437525

Alignment:
BDTTTAAGTACTTDDDD
-RYSTYVGTYCTYGGRY

Original motif Reverse complement motif
Consensus sequence: DDHDAAGTACTTAAADB Consensus sequence: BDTTTAAGTACTTDDDD

Motif ID: UP00100
Motif name: Gata6_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0456644

Alignment:
GBBVCGATATCGSVGYD
-KKCCKAGMACBMASMM

Original motif Reverse complement motif
Consensus sequence: GBBVCGATATCGSVGYD Consensus sequence: HKCBSCGATATCGVBBC

Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0458473

Alignment:
DDHBTTTTTTTTHDAVH
-RYSTYVGTYCTYGGRY

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH

Motif ID: UP00053
Motif name: Rxra_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0463964

Alignment:
DBHBDTGACCCCDHVHB
KKCCKAGMACBMASMM-

Original motif Reverse complement motif
Consensus sequence: DBHBDTGACCCCDHVHB Consensus sequence: VHBHDGGGGTCAHBHBD

Dataset #: 1 Motif ID: 136 Motif name: C136

Original motif Reverse complement motif
Consensus sequence: GDGGVKSMHGGGRMT Consensus sequence: AYKCCCDRSYVCCHC

Best Matches for Motif ID 136 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 15
Similarity score: 0.0296869

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
AYKCCCDRSYVCCHC-------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00036
Motif name: Myf6_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0329478

Alignment:
VVVRACAGVCBCDCC
GDGGVKSMHGGGRMT

Original motif Reverse complement motif
Consensus sequence: VVVRACAGVCBCDCC Consensus sequence: GGDGBGVCTGTKVVB

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0360132

Alignment:
GKRGGGGGGGGGGBD
GDGGVKSMHGGGRMT

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00082
Motif name: Zfp187_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0383817

Alignment:
DDGMCCTBGTCCHYHV
AYKCCCDRSYVCCHC-

Original motif Reverse complement motif
Consensus sequence: DDGMCCTBGTCCHYHV Consensus sequence: VHMDGGACVAGGRCDH

Motif ID: UP00096
Motif name: Sox13_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0391249

Alignment:
DDDHTGGGTGGGHAHHD
GDGGVKSMHGGGRMT--

Original motif Reverse complement motif
Consensus sequence: DDDHTGGGTGGGHAHHD Consensus sequence: DHHTHCCCACCCAHDDH

Dataset #: 1 Motif ID: 137 Motif name: C137

Original motif Reverse complement motif
Consensus sequence: RAAYTCAGRAAY Consensus sequence: MTTKCTGAKTTK

Best Matches for Motif ID 137 (Highest to Lowest)

Motif ID: UP00085
Motif name: Sfpi1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.00902566

Alignment:
HHAWTTHVGGAACH
-RAAYTCAGRAAY-

Original motif Reverse complement motif
Consensus sequence: HHAWTTHVGGAACH Consensus sequence: DGTTCCVDAAWTHD

Motif ID: UP00101
Motif name: Sox12_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.0179124

Alignment:
VVDBASACAAAGRADH
----RAAYTCAGRAAY

Original motif Reverse complement motif
Consensus sequence: VVDBASACAAAGRADH Consensus sequence: HDTMCTTTGTSTVDBB

Motif ID: UP00185
Motif name: Pbx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 12
Similarity score: 0.0179708

Alignment:
BVDWHWTTGATGRKTKH
-----MTTKCTGAKTTK

Original motif Reverse complement motif
Consensus sequence: HYAYMCATCAAWHWDVV Consensus sequence: BVDWHWTTGATGRKTKH

Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.0209132

Alignment:
HBDDDAACAAAGRVBHH
----RAAYTCAGRAAY-

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH

Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.0212068

Alignment:
HBDDRAACAAAGRABHH
----RAAYTCAGRAAY-

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH

Dataset #: 1 Motif ID: 138 Motif name: C138

Original motif Reverse complement motif
Consensus sequence: AAGAAARSAAG Consensus sequence: CTTSKTTTCTT

Best Matches for Motif ID 138 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0334943

Alignment:
HHVBYTTTTTTTTDDVV
--CTTSKTTTCTT----

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0441276

Alignment:
HHHTTRTTDTTTKDH
--CTTSKTTTCTT--

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH

Motif ID: UP00028
Motif name: Tcfap2e_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0449117

Alignment:
HDCDBRAAAAAADD
--AAGAAARSAAG-

Original motif Reverse complement motif
Consensus sequence: HDCDBRAAAAAADD Consensus sequence: DDTTTTTTMBDGDH

Motif ID: UP00171
Motif name: Msx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0452028

Alignment:
HHVTTAATTKGTTHTV
--CTTSKTTTCTT---

Original motif Reverse complement motif
Consensus sequence: VAHAACYAATTAABHH Consensus sequence: HHVTTAATTKGTTHTV

Motif ID: UP00025
Motif name: Foxk1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0456684

Alignment:
HDDTGTTKTTKTHHD
-CTTSKTTTCTT---

Original motif Reverse complement motif
Consensus sequence: HHHAYAAYAACAHHH Consensus sequence: HDDTGTTKTTKTHHD

Dataset #: 1 Motif ID: 139 Motif name: C139

Original motif Reverse complement motif
Consensus sequence: WWMAAABWWWVAAAAWW Consensus sequence: WWTTTTVWWWBTTTYWW

Best Matches for Motif ID 139 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 17
Similarity score: 0.0481917

Alignment:
HHBDHDDAACAATDRHHHHHBW
---WWMAAABWWWVAAAAWW--

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0496844

Alignment:
VBDDAAAAAAAAMVBHH
WWMAAABWWWVAAAAWW

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0509582

Alignment:
DHDBTAWTAATTHAKTH
WWTTTTVWWWBTTTYWW

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH

Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0532816

Alignment:
DBTHHAAAAAAAAVHDH
WWMAAABWWWVAAAAWW

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH

Motif ID: UP00037
Motif name: Zfp105_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.05356

Alignment:
HDMAVTTATTGARVCMH
WWMAAABWWWVAAAAWW

Original motif Reverse complement motif
Consensus sequence: DYGVKTCAATAABTYDD Consensus sequence: HDMAVTTATTGARVCMH

Dataset #: 1 Motif ID: 140 Motif name: C140

Original motif Reverse complement motif
Consensus sequence: BSCCBCVSSSBCCYHVG Consensus sequence: CVDMGGBSSSVGBGGSB

Best Matches for Motif ID 140 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0510096

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
BSCCBCVSSSBCCYHVG-----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 17
Similarity score: 0.0520625

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
--CVDMGGBSSSVGBGGSB----

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0523971

Alignment:
BHHBHCCGCCCCDHHHH
BSCCBCVSSSBCCYHVG

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 17
Similarity score: 0.0544357

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
------BSCCBCVSSSBCCYHVG

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 17
Similarity score: 0.0585258

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
--CVDMGGBSSSVGBGGSB----

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Dataset #: 1 Motif ID: 141 Motif name: C141

Original motif Reverse complement motif
Consensus sequence: YMATCCYRSYRCTTGKR Consensus sequence: KYCAAGKMSKMGGATRK

Best Matches for Motif ID 141 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 17
Similarity score: 0.048695

Alignment:
VDWDARRGACGCGGWHGGAKHV
-KYCAAGKMSKMGGATRK----

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 17
Similarity score: 0.0533376

Alignment:
BDVBCDACGCKCGCGTBHRKHD
---KYCAAGKMSKMGGATRK--

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0540672

Alignment:
BHHBHCCGCCCCDHHHH
YMATCCYRSYRCTTGKR

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00526
Motif name: Foxn1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0558883

Alignment:
HDWHMHGACGCGCGTRBVVBHW
KYCAAGKMSKMGGATRK-----

Original motif Reverse complement motif
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Consensus sequence: HDWHMHGACGCGCGTRBVVBHW

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0562075

Alignment:
BVVHAGGGGGCGRDHHB
KYCAAGKMSKMGGATRK

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Dataset #: 1 Motif ID: 142 Motif name: C142

Original motif Reverse complement motif
Consensus sequence: WHAAAAAWTAAAAWW Consensus sequence: WWTTTTAWTTTTTHW

Best Matches for Motif ID 142 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0209943

Alignment:
HHVBYTTTTTTTTDDVV
WWTTTTAWTTTTTHW--

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.0296488

Alignment:
HARTHAATTAWTAVDHD
WHAAAAAWTAAAAWW--

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH

Motif ID: UP00044
Motif name: Mafk_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0298134

Alignment:
MBHTGCADTTTTTHV
WWTTTTAWTTTTTHW

Original motif Reverse complement motif
Consensus sequence: VHAAAAADTGCAHBR Consensus sequence: MBHTGCADTTTTTHV

Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.02982

Alignment:
DDHBTTTTTTTTHDAVH
-WWTTTTAWTTTTTHW-

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH

Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0336901

Alignment:
HHHTTRTTDTTTKDH
WWTTTTAWTTTTTHW

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH

Dataset #: 1 Motif ID: 143 Motif name: C143

Original motif Reverse complement motif
Consensus sequence: MKTGCTKSSMTTAAMK Consensus sequence: RRTTAAYSSRAGCARY

Best Matches for Motif ID 143 (Highest to Lowest)

Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 16
Similarity score: 0.043815

Alignment:
HBHDVBWGATHBTATCRVBHHH
---RRTTAAYSSRAGCARY---

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH

Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 16
Similarity score: 0.0460848

Alignment:
HDTBHHCCHTAGCAACVVDHHHH
RRTTAAYSSRAGCARY-------

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH

Motif ID: UP00190
Motif name: Nkx2-3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0485356

Alignment:
HHTTAAGTACTTAAMK
MKTGCTKSSMTTAAMK

Original motif Reverse complement motif
Consensus sequence: YYTTAAGTACTTAAHD Consensus sequence: HHTTAAGTACTTAAMK

Motif ID: UP00421
Motif name: Etv1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0513932

Alignment:
MVHBACCGGAAGTVDVH
RRTTAAYSSRAGCARY-

Original motif Reverse complement motif
Consensus sequence: MVHBACCGGAAGTVDVH Consensus sequence: HBDBACTTCCGGTBHVY

Motif ID: UP00410
Motif name: Elk1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.051952

Alignment:
VVHBACCGGAAGTDBHD
RRTTAAYSSRAGCARY-

Original motif Reverse complement motif
Consensus sequence: VVHBACCGGAAGTDBHD Consensus sequence: DHBDACTTCCGGTVHVB

Dataset #: 1 Motif ID: 144 Motif name: C144

Original motif Reverse complement motif
Consensus sequence: GACCAGRSYRGYCTC Consensus sequence: GAGKCKKSKCTGGTC

Best Matches for Motif ID 144 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 15
Similarity score: 0.0365285

Alignment:
YBVDMGTGGGTGGTCKVVBVBBT
GAGKCKKSKCTGGTC--------

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 15
Similarity score: 0.0367839

Alignment:
BTBVTCVTGGGTGGTCMVVDVBB
-GAGKCKKSKCTGGTC-------

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0372292

Alignment:
DBCDWHCTGGGTGGTCMDHBBAH
-GAGKCKKSKCTGGTC-------

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH

Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 15
Similarity score: 0.037305

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
-GACCAGRSYRGYCTC------

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0395722

Alignment:
DVVTTVGTGGGHGGYAMHWHHHY
-GAGKCKKSKCTGGTC-------

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY

Dataset #: 1 Motif ID: 145 Motif name: C145

Original motif Reverse complement motif
Consensus sequence: WWCADCAMCHAMWW Consensus sequence: WWRTHGYTGDTGWW

Best Matches for Motif ID 145 (Highest to Lowest)

Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0335902

Alignment:
HDYAAAHAAMAADHD
-WWCADCAMCHAMWW

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH

Motif ID: UP00069
Motif name: Sox1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0379211

Alignment:
HBDTAATTGTTABBV
WWRTHGYTGDTGWW-

Original motif Reverse complement motif
Consensus sequence: HBDTAATTGTTABBV Consensus sequence: VBVTAACAATTADVD

Motif ID: UP00185
Motif name: Pbx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0393885

Alignment:
HYAYMCATCAAWHWDVV
---WWCADCAMCHAMWW

Original motif Reverse complement motif
Consensus sequence: HYAYMCATCAAWHWDVV Consensus sequence: BVDWHWTTGATGRKTKH

Motif ID: UP00091
Motif name: Sox5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0396706

Alignment:
DHDCATMATTDASDD
-WWCADCAMCHAMWW

Original motif Reverse complement motif
Consensus sequence: DHDCATMATTDASDD Consensus sequence: DHSTDAATYATGDHD

Motif ID: UP00067
Motif name: Lef1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0406825

Alignment:
VDVVATCAATCAHBHD
-WWCADCAMCHAMWW-

Original motif Reverse complement motif
Consensus sequence: VDVVATCAATCAHBHD Consensus sequence: DHVDTGATTGATVBDV

Dataset #: 1 Motif ID: 146 Motif name: C146

Original motif Reverse complement motif
Consensus sequence: YRGCSAGGGSTAYR Consensus sequence: KMTASCCCTSGCKK

Best Matches for Motif ID 146 (Highest to Lowest)

Motif ID: UP00022
Motif name: Zfp740_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0330877

Alignment:
HVKDCCGGGGGGWADDD
--YRGCSAGGGSTAYR-

Original motif Reverse complement motif
Consensus sequence: DDDTWCCCCCCGGDRVH Consensus sequence: HVKDCCGGGGGGWADDD

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 14
Similarity score: 0.0345026

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
-----YRGCSAGGGSTAYR----

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0369871

Alignment:
DHHDGGGCGRGGKHBH
--YRGCSAGGGSTAYR

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0374088

Alignment:
HDBABCGBKRGYGGCGMSBHAK
--YRGCSAGGGSTAYR------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00096
Motif name: Sox13_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0400162

Alignment:
DDDHTGGGTGGGHAHHD
---YRGCSAGGGSTAYR

Original motif Reverse complement motif
Consensus sequence: DDDHTGGGTGGGHAHHD Consensus sequence: DHHTHCCCACCCAHDDH

Dataset #: 1 Motif ID: 147 Motif name: C147

Original motif Reverse complement motif
Consensus sequence: CYWGGKCTACMCAGRG Consensus sequence: CKCTGYGTAGYCCWKG

Best Matches for Motif ID 147 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 16
Similarity score: 0.0270313

Alignment:
HTBVVVDGGACCACCCRGRDBG
----CYWGGKCTACMCAGRG--

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH

Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 16
Similarity score: 0.029263

Alignment:
DTVBDDRGACCACCCAGDWDGBH
---CYWGGKCTACMCAGRG----

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 16
Similarity score: 0.0296975

Alignment:
HGDHVHKGACCACCCGGBGBGDB
---CYWGGKCTACMCAGRG----

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 16
Similarity score: 0.0322159

Alignment:
HDGHHBHRGACCACCCGSVDVG
----CYWGGKCTACMCAGRG--

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 16
Similarity score: 0.0386994

Alignment:
BBBDVVRGACCACCCAVGABBAB
---CYWGGKCTACMCAGRG----

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Dataset #: 1 Motif ID: 148 Motif name: C148

Original motif Reverse complement motif
Consensus sequence: SCMSBGACACHGSCAS Consensus sequence: STGSCDGTGTCBSYGS

Best Matches for Motif ID 148 (Highest to Lowest)

Motif ID: UP00068
Motif name: Eomes_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0245227

Alignment:
VBVDAGGTGTYGVBBV
STGSCDGTGTCBSYGS

Original motif Reverse complement motif
Consensus sequence: VBVDAGGTGTYGVBBV Consensus sequence: VVBVCKACACCTHVBV

Motif ID: UP00100
Motif name: Gata6_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0325938

Alignment:
HKCBSCGATATCGVBBC
-STGSCDGTGTCBSYGS

Original motif Reverse complement motif
Consensus sequence: GBBVCGATATCGSVGYD Consensus sequence: HKCBSCGATATCGVBBC

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0369917

Alignment:
DVMVGCACACACKCVH
SCMSBGACACHGSCAS

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD

Motif ID: UP00016
Motif name: Sry_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0372098

Alignment:
HHDHDRAACAATDDVHV
-SCMSBGACACHGSCAS

Original motif Reverse complement motif
Consensus sequence: HHDHDRAACAATDDVHV Consensus sequence: VHVHDATTGTTMHDDDH

Motif ID: UP00101
Motif name: Sox12_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.037346

Alignment:
VVDBASACAAAGRADH
SCMSBGACACHGSCAS

Original motif Reverse complement motif
Consensus sequence: VVDBASACAAAGRADH Consensus sequence: HDTMCTTTGTSTVDBB

Dataset #: 1 Motif ID: 149 Motif name: C149

Original motif Reverse complement motif
Consensus sequence: TKAACTCAGRMR Consensus sequence: KYKCTGAGTTYA

Best Matches for Motif ID 149 (Highest to Lowest)

Motif ID: UP00148
Motif name: Hdx
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 12
Similarity score: 0.0197225

Alignment:
BDBDHTGATTTCDHYDD
-KYKCTGAGTTYA----

Original motif Reverse complement motif
Consensus sequence: DDKDHGAAATCAHHBHV Consensus sequence: BDBDHTGATTTCDHYDD

Motif ID: UP00020
Motif name: Atf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0267132

Alignment:
DMDMTGACGTCAKHBD
KYKCTGAGTTYA----

Original motif Reverse complement motif
Consensus sequence: DBDRTGACGTCAYHRD Consensus sequence: DMDMTGACGTCAKHBD

Motif ID: UP00014
Motif name: Sox17_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.0270855

Alignment:
DDBDKATGAATGHDBHV
--KYKCTGAGTTYA---

Original motif Reverse complement motif
Consensus sequence: VHBHHCATTCATRHVDD Consensus sequence: DDBDKATGAATGHDBHV

Motif ID: UP00064
Motif name: Sox18_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0271199

Alignment:
DBVBTRAATTYADDHV
KYKCTGAGTTYA----

Original motif Reverse complement motif
Consensus sequence: DBVBTRAATTYADDHV Consensus sequence: VDHDTKAATTMABBBH

Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 12
Similarity score: 0.0301995

Alignment:
DMTWDGTCAGCADWTTH
-TKAACTCAGRMR----

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH

Dataset #: 1 Motif ID: 150 Motif name: C150

Original motif Reverse complement motif
Consensus sequence: YYCMRSSACASYCARR Consensus sequence: KKTGKSTGTSSKRGMM

Best Matches for Motif ID 150 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 16
Similarity score: 0.022327

Alignment:
ABBBBVVRGACCACCCACRDBBM
---YYCMRSSACASYCARR----

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 16
Similarity score: 0.0227877

Alignment:
BBBDVVRGACCACCCAVGABBAB
--YYCMRSSACASYCARR-----

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0235838

Alignment:
VYWVVHCRCCACMCACGAHSBHH
-YYCMRSSACASYCARR------

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 16
Similarity score: 0.0250268

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-YYCMRSSACASYCARR------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 16
Similarity score: 0.0265224

Alignment:
DTVBDDRGACCACCCAGDWDGBH
--YYCMRSSACASYCARR-----

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH

Dataset #: 1 Motif ID: 151 Motif name: C151

Original motif Reverse complement motif
Consensus sequence: SWGGCWGKCCWGGVWS Consensus sequence: SWBCCWGGYCWGCCWS

Best Matches for Motif ID 151 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 16
Similarity score: 0.0274084

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
-------SWGGCWGKCCWGGVWS

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0288558

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
SWBCCWGGYCWGCCWS------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 16
Similarity score: 0.0368282

Alignment:
VYWVVHCRCCACMCACGAHSBHH
SWBCCWGGYCWGCCWS-------

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 16
Similarity score: 0.0424675

Alignment:
BBBDVVRGACCACCCAVGABBAB
-SWBCCWGGYCWGCCWS------

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 16
Similarity score: 0.04298

Alignment:
ABBBBVVRGACCACCCACRDBBM
--SWBCCWGGYCWGCCWS-----

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT

Dataset #: 1 Motif ID: 152 Motif name: C152

Original motif Reverse complement motif
Consensus sequence: KWRRKWRARAWMRAWM Consensus sequence: YWTKYWTKTKWYKKWR

Best Matches for Motif ID 152 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0218448

Alignment:
HHVBYTTTTTTTTDDVV
YWTKYWTKTKWYKKWR-

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.038475

Alignment:
DDHBTTTTTTTTHDAVH
-YWTKYWTKTKWYKKWR

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH

Motif ID: UP00051
Motif name: Sox8_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0392698

Alignment:
DDATBWATTGTTHHDDD
-YWTKYWTKTKWYKKWR

Original motif Reverse complement motif
Consensus sequence: DDATBWATTGTTHHDDD Consensus sequence: DDDHDAACAATWBATDD

Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0401556

Alignment:
HDTYTTGTTWTKDDDT
YWTKYWTKTKWYKKWR

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT

Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0410382

Alignment:
HARTHAATTAWTAVDHD
KWRRKWRARAWMRAWM-

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH

Dataset #: 1 Motif ID: 153 Motif name: C153

Original motif Reverse complement motif
Consensus sequence: YYAGRVTGGCBYTGR Consensus sequence: MCAMBGCCAVMCTKM

Best Matches for Motif ID 153 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 15
Similarity score: 0.0398267

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
------YYAGRVTGGCBYTGR--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 15
Similarity score: 0.0410774

Alignment:
VYWVVHCRCCACMCACGAHSBHH
--MCAMBGCCAVMCTKM------

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00035
Motif name: Hic1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0449339

Alignment:
DDBHGGTTGGCATVBD
MCAMBGCCAVMCTKM-

Original motif Reverse complement motif
Consensus sequence: DBBATGCCAACCHVHH Consensus sequence: DDBHGGTTGGCATVBD

Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0460502

Alignment:
BBHBGAGTGGGAHHDB
-YYAGRVTGGCBYTGR

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0461303

Alignment:
VMYDHDGMCCHCCKBGVVAAVH
-MCAMBGCCAVMCTKM------

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH

Results created by MOTIFSIM on 11-19-2016 22:04:18
Runtime: 1193.59 seconds

MOTIFSIM is written by Ngoc Tam L. Tran
Motif logo generated by weblogo