MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.1

INPUT

Input Parameters
Number of files: 1
Number of top significant motifs: 10
Number of best matches: 5
Similarity cutoff >= 0.75
Matching motif database: UniProbe Mus Musculus
Phylogenetic tree: Yes
Combined similar motifs: Yes
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
CisFinder_DM721_Cluster.txt 153 1

RESULTS

Best Matches in Database for Each Motif (Highest to Lowest)

Dataset #: 1 Motif ID: 1 Motif name: C001

Original motif Reverse complement motif
Consensus sequence: WWWAAAAAWWAAAAAWAAAAAWWAAAAHWW Consensus sequence: WWHTTTTWWTTTTTWTTTTTWWTTTTTWWW

Best Matches for Motif ID 1 (Highest to Lowest)

Motif ID: UP00528
Motif name: Foxm1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 23
Similarity score: 0.0846473

Alignment:
-------HADTBVADGATGCATCMTGMVHB
WWWAAAAAWWAAAAAWAAAAAWWAAAAHWW--

Original motif Reverse complement motif
Consensus sequence: HADTBVADGATGCATCMTGMVHB Consensus sequence: VHVRCAYGATGCATCDTVVADTH


Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 22
Similarity score: 0.561689

Alignment:
--------HHBDHDDAACAATDRHHHHHBW
WWWAAAAAWWAAAAAWAAAAAWWAAAAHWW-

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH


Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 22
Similarity score: 0.566383

Alignment:
--------HBHDVHDTCTTATCTHTDDHDV
WWHTTTTWWTTTTTWTTTTTWWTTTTTWWW-----

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 22
Similarity score: 0.575767

Alignment:
HBHDVBWGATHBTATCRVBHHH--------
------WWWAAAAAWWAAAAAWAAAAAWWAAAAHWW

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 22
Similarity score: 0.578275

Alignment:
--------VVYDDDCHCAVACAATTDBVAC
WWHTTTTWWTTTTTWTTTTTWWTTTTTWWW-----

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Dataset #: 1 Motif ID: 2 Motif name: C002

Original motif Reverse complement motif
Consensus sequence: TAYRYACACACACACACRYAYRY Consensus sequence: MKKTKKGTGTGTGTGTGTKKKTA

Best Matches for Motif ID 2 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 23
Similarity score: 0.0589959

Alignment:
MHHHWHYTMCCHCCCACVAABVH
TAYRYACACACACACACRYAYRY

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 23
Similarity score: 0.0678722

Alignment:
YDYBDHTMCACGTGGADDBMDGT
TAYRYACACACACACACRYAYRY

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 23
Similarity score: 0.0739216

Alignment:
BBBDVVRGACCACCCAVGABBAB
TAYRYACACACACACACRYAYRY

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB


Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 23
Similarity score: 0.077586

Alignment:
DTVBDDRGACCACCCAGDWDGBH
TAYRYACACACACACACRYAYRY

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 22
Similarity score: 0.55938

Alignment:
-HVBDAGCGBGGGTGGCRDBDDDB
MKKTKKGTGTGTGTGTGTKKKTA-

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Dataset #: 1 Motif ID: 3 Motif name: C003

Original motif Reverse complement motif
Consensus sequence: GSCYCHSCCYVCCYCCCCCCSSCCCCCSSC Consensus sequence: GSSGGGGGSSGGGGGGKGGVMGGSHGKGSC

Best Matches for Motif ID 3 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 23
Similarity score: 0.0504417

Alignment:
-------VYWVVHCRCCACMCACGAHSBHH
GSCYCHSCCYVCCYCCCCCCSSCCCCCSSC-

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 23
Similarity score: 0.0508168

Alignment:
-------MHHHWHYTMCCHCCCACVAABVH
GSCYCHSCCYVCCYCCCCCCSSCCCCCSSC--

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 23
Similarity score: 0.0518257

Alignment:
BDDHVDKGCCACCCVCGCTDBVH-------
-GSSGGGGGSSGGGGGGKGGVMGGSHGKGSC

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 23
Similarity score: 0.05306

Alignment:
-------BADHBDHCGCCCMCGCAHHDBBV
GSCYCHSCCYVCCYCCCCCCSSCCCCCSSC

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 23
Similarity score: 0.0591633

Alignment:
-------BTBVTCVTGGGTGGTCMVVDVBB
GSSGGGGGSSGGGGGGKGGVMGGSHGKGSC-----

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB


Dataset #: 1 Motif ID: 4 Motif name: C004

Original motif Reverse complement motif
Consensus sequence: SSSSSCSSSSSCCSSSSCCSCSSSSSS Consensus sequence: SSSSSSGSGGSSSSGGSSSSSGSSSSS

Best Matches for Motif ID 4 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 23
Similarity score: 0.0378869

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV----
-SSSSSSGSGGSSSSGGSSSSSGSSSSS

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 23
Similarity score: 0.042097

Alignment:
----HVBDAGCGBGGGTGGCRDBDDDB
SSSSSCSSSSSCCSSSSCCSCSSSSSS----

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 23
Similarity score: 0.042858

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB----
--SSSSSSGSGGSSSSGGSSSSSGSSSSS

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 23
Similarity score: 0.0467324

Alignment:
BTBVTCVTGGGTGGTCMVVDVBB----
--SSSSSSGSGGSSSSGGSSSSSGSSSSS

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB


Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 23
Similarity score: 0.0486423

Alignment:
----ABBBBVVRGACCACCCACRDBBM
SSSSSCSSSSSCCSSSSCCSCSSSSSS---

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT


Dataset #: 1 Motif ID: 5 Motif name: C005

Original motif Reverse complement motif
Consensus sequence: TCTGTAGMCCAGGCTGGCCTYGW Consensus sequence: WCKAGGCCAGCCTGGYCTACAGA

Best Matches for Motif ID 5 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 23
Similarity score: 0.0620662

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
TCTGTAGMCCAGGCTGGCCTYGW

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 22
Similarity score: 0.553936

Alignment:
-DTVBDDRGACCACCCAGDWDGBH
TCTGTAGMCCAGGCTGGCCTYGW-

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH


Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 22
Similarity score: 0.556669

Alignment:
-BBBDVVRGACCACCCAVGABBAB
TCTGTAGMCCAGGCTGGCCTYGW-

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 22
Similarity score: 0.55849

Alignment:
HGDHVHKGACCACCCGGBGBGDB-
-WCKAGGCCAGCCTGGYCTACAGA

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.56544

Alignment:
DCATDBTGHGCATKMTTBRSWR-
WCKAGGCCAGCCTGGYCTACAGA

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR


Dataset #: 1 Motif ID: 6 Motif name: C006

Original motif Reverse complement motif
Consensus sequence: SWCACACASWCACACWSW Consensus sequence: WSWGTGTGWSTGTGTGWS

Best Matches for Motif ID 6 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0361661

Alignment:
VVYDDDCHCAVACAATTDBVAC
--SWCACACASWCACACWSW--

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0406554

Alignment:
BADHBDHCGCCCMCGCAHHDBBV
---SWCACACASWCACACWSW--

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 18
Similarity score: 0.040868

Alignment:
VYWVVHCRCCACMCACGAHSBHH
-SWCACACASWCACACWSW----

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0421858

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
WSWGTGTGWSTGTGTGWS-----

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0427432

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
---SWCACACASWCACACWSW--

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Dataset #: 1 Motif ID: 7 Motif name: C007

Original motif Reverse complement motif
Consensus sequence: KTTSTGAGTTCVAGGMCAGCCTS Consensus sequence: SAGGCTGYCCTVGAACTCASAAY

Best Matches for Motif ID 7 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 22
Similarity score: 0.0642913

Alignment:
VVYDDDCHCAVACAATTDBVAC-
-SAGGCTGYCCTVGAACTCASAAY

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 22
Similarity score: 0.0664801

Alignment:
-VCTBHBVCTTGGWTACVVVVVDB
KTTSTGAGTTCVAGGMCAGCCTS-

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 22
Similarity score: 0.0672967

Alignment:
-HDTBHHCCHTAGCAACVVDHHHH
SAGGCTGYCCTVGAACTCASAAY-

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 22
Similarity score: 0.0707277

Alignment:
-DVVTTVGTGGGHGGYAMHWHHHY
KTTSTGAGTTCVAGGMCAGCCTS-

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 21
Similarity score: 0.562337

Alignment:
VMYDHDGMCCHCCKBGVVAAVH--
--SAGGCTGYCCTVGAACTCASAAY

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH


Dataset #: 1 Motif ID: 8 Motif name: C008

Original motif Reverse complement motif
Consensus sequence: SSCCSSCCCCSSCCSS Consensus sequence: SSGGSSGGGGSSGGSS

Best Matches for Motif ID 8 (Highest to Lowest)

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0353177

Alignment:
HVBCCCCCCCCMHHHB
SSCCSSCCCCSSCCSS

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 16
Similarity score: 0.0353208

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
--SSCCSSCCCCSSCCSS----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 16
Similarity score: 0.0416492

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
-------SSGGSSGGGGSSGGSS

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 16
Similarity score: 0.0427346

Alignment:
DVVTTVGTGGGHGGYAMHWHHHY
SSGGSSGGGGSSGGSS-------

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0428588

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
-SSGGSSGGGGSSGGSS------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Dataset #: 1 Motif ID: 9 Motif name: C009

Original motif Reverse complement motif
Consensus sequence: ABGCCTTTAATCCCAGCACTHR Consensus sequence: MHAGTGCTGGGATTAAAGGCBT

Best Matches for Motif ID 9 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.0664875

Alignment:
DVVTTVGTGGGHGGYAMHWHHHY
MHAGTGCTGGGATTAAAGGCBT-

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 21
Similarity score: 0.56321

Alignment:
HBHDVBWGATHBTATCRVBHHH-
-ABGCCTTTAATCCCAGCACTHR

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 21
Similarity score: 0.565627

Alignment:
-BADHBDHCGCCCMCGCAHHDBBV
ABGCCTTTAATCCCAGCACTHR--

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 21
Similarity score: 0.56702

Alignment:
HVGVSAGGAGGGTCYHHHHYVH-
-ABGCCTTTAATCCCAGCACTHR

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 20
Similarity score: 1.06431

Alignment:
--BDBBVBVGTAWCCAAGVBHBAGB
MHAGTGCTGGGATTAAAGGCBT---

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Dataset #: 1 Motif ID: 10 Motif name: C010

Original motif Reverse complement motif
Consensus sequence: WWWAAAAWWAAAAAAAAAAWW Consensus sequence: WWTTTTTTTTTTWWTTTTWWW

Best Matches for Motif ID 10 (Highest to Lowest)

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 21
Similarity score: 0.0528064

Alignment:
HBHDVHDTCTTATCTHTDDHDV
WWTTTTTTTTTTWWTTTTWWW-

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 21
Similarity score: 0.0586273

Alignment:
HHBDHDDAACAATDRHHHHHBW
-WWWAAAAWWAAAAAAAAAAWW

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH


Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 21
Similarity score: 0.0606713

Alignment:
HHHBBMGATAVHATCWVVDHVH
-WWWAAAAWWAAAAAAAAAAWW

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 21
Similarity score: 0.0617422

Alignment:
VVYDDDCHCAVACAATTDBVAC
WWWAAAAWWAAAAAAAAAAWW-

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 21
Similarity score: 0.065491

Alignment:
HDTBHHCCHTAGCAACVVDHHHH
WWWAAAAWWAAAAAAAAAAWW--

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH


Dataset #: 1 Motif ID: 11 Motif name: C011

Original motif Reverse complement motif
Consensus sequence: KMGAGAKMGAGAGAGAKM Consensus sequence: RRTCTCTCTCRRTCTCRR

Best Matches for Motif ID 11 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.0404807

Alignment:
VVYDDDCHCAVACAATTDBVAC
---RRTCTCTCTCRRTCTCRR-

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.0471227

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
----RRTCTCTCTCRRTCTCRR-

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0474739

Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
RRTCTCTCTCRRTCTCRR-----

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0475854

Alignment:
HDBABCGBKRGYGGCGMSBHAK
--KMGAGAKMGAGAGAGAKM--

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0500023

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
---KMGAGAKMGAGAGAGAKM--

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Dataset #: 1 Motif ID: 12 Motif name: C012

Original motif Reverse complement motif
Consensus sequence: MKAGAGMKAGAGAGAGAKM Consensus sequence: YRTCTCTCTCTRYCTCTRR

Best Matches for Motif ID 12 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 19
Similarity score: 0.0419739

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-MKAGAGMKAGAGAGAGAKM--

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 19
Similarity score: 0.0446412

Alignment:
HBHDVHDTCTTATCTHTDDHDV
YRTCTCTCTCTRYCTCTRR---

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 19
Similarity score: 0.0455704

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
--MKAGAGMKAGAGAGAGAKM--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 19
Similarity score: 0.0502954

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
--MKAGAGMKAGAGAGAGAKM--

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 19
Similarity score: 0.0510365

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
--MKAGAGMKAGAGAGAGAKM--

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Dataset #: 1 Motif ID: 13 Motif name: C013

Original motif Reverse complement motif
Consensus sequence: WVCTGGAACTCACTHTGTAGACCAGGM Consensus sequence: YCCTGGTCTACADAGTGAGTTCCAGVW

Best Matches for Motif ID 13 (Highest to Lowest)

Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 22
Similarity score: 0.0456555

Alignment:
-----MWSMBAARRATGCDCABHATGD
WVCTGGAACTCACTHTGTAGACCAGGM-----

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 22
Similarity score: 0.0503111

Alignment:
VVYDDDCHCAVACAATTDBVAC-----
-----YCCTGGTCTACADAGTGAGTTCCAGVW

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00526
Motif name: Foxn1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 22
Similarity score: 0.0518427

Alignment:
-----WHVBVVMACGCGCGTCDYHWDH
WVCTGGAACTCACTHTGTAGACCAGGM-----

Original motif Reverse complement motif
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Consensus sequence: HDWHMHGACGCGCGTRBVVBHW


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 21
Similarity score: 0.546981

Alignment:
------BHCBCBCCGGGTGGTCYHVHDCH
WVCTGGAACTCACTHTGTAGACCAGGM------

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 21
Similarity score: 0.549369

Alignment:
------BTBVTCVTGGGTGGTCMVVDVBB
YCCTGGTCTACADAGTGAGTTCCAGVW--

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB


Dataset #: 1 Motif ID: 14 Motif name: C014

Original motif Reverse complement motif
Consensus sequence: YSGGAGGCAGAGGCMS Consensus sequence: SYGCCTCTGCCTCCSK

Best Matches for Motif ID 14 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 16
Similarity score: 0.0331356

Alignment:
VHYTCCDWCCGCGTCMMTHWHV
--SYGCCTCTGCCTCCSK----

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV


Motif ID: UP00068
Motif name: Eomes_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.034812

Alignment:
VVBVCKACACCTHVBV
SYGCCTCTGCCTCCSK

Original motif Reverse complement motif
Consensus sequence: VBVDAGGTGTYGVBBV Consensus sequence: VVBVCKACACCTHVBV


Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 16
Similarity score: 0.034835

Alignment:
HVGVSAGGAGGGTCYHHHHYVH
YSGGAGGCAGAGGCMS------

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH


Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.034915

Alignment:
BDHHMCGCCCCCTHVBB
-SYGCCTCTGCCTCCSK

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00031
Motif name: Zbtb3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0350751

Alignment:
BBBAVTGCAGTGBBVDD
-SYGCCTCTGCCTCCSK

Original motif Reverse complement motif
Consensus sequence: DDBBBCACTGCABTBBB Consensus sequence: BBBAVTGCAGTGBBVDD


Dataset #: 1 Motif ID: 15 Motif name: C015

Original motif Reverse complement motif
Consensus sequence: DVAGCCWKGGCTACAVAGCK Consensus sequence: RGCTVTGTAGCCYWGGCTVD

Best Matches for Motif ID 15 (Highest to Lowest)

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 20
Similarity score: 0.0486537

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
--DVAGCCWKGGCTACAVAGCK-

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 20
Similarity score: 0.0536153

Alignment:
HDTBHHCCHTAGCAACVVDHHHH
--DVAGCCWKGGCTACAVAGCK-

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 20
Similarity score: 0.0624325

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-RGCTVTGTAGCCYWGGCTVD--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 20
Similarity score: 0.0635845

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
--RGCTVTGTAGCCYWGGCTVD

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH


Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 20
Similarity score: 0.0640763

Alignment:
CVHBSCGGGTGGTCMHVHHCDH
--RGCTVTGTAGCCYWGGCTVD

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH


Dataset #: 1 Motif ID: 16 Motif name: C016

Original motif Reverse complement motif
Consensus sequence: HWAAWAAAHWAAMAWAMAAWW Consensus sequence: WWTTYTWTYTTWDTTTWTTWH

Best Matches for Motif ID 16 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 21
Similarity score: 0.0445695

Alignment:
HHBDHDDAACAATDRHHHHHBW
-HWAAWAAAHWAAMAWAMAAWW

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH


Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 21
Similarity score: 0.0472803

Alignment:
HBHDVHDTCTTATCTHTDDHDV
WWTTYTWTYTTWDTTTWTTWH-

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 21
Similarity score: 0.0518988

Alignment:
HBHDVBWGATHBTATCRVBHHH
-HWAAWAAAHWAAMAWAMAAWW

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 21
Similarity score: 0.0523549

Alignment:
VVYDDDCHCAVACAATTDBVAC
HWAAWAAAHWAAMAWAMAAWW-

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 21
Similarity score: 0.0599775

Alignment:
VYWVVHCRCCACMCACGAHSBHH
-HWAAWAAAHWAAMAWAMAAWW-

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Dataset #: 1 Motif ID: 17 Motif name: C017

Original motif Reverse complement motif
Consensus sequence: WSWGAGASWSAGAGASWS Consensus sequence: SWSTCTCTSWSTCTCWSW

Best Matches for Motif ID 17 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0370092

Alignment:
VDWDARRGACGCGGWHGGAKHV
--WSWGAGASWSAGAGASWS--

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0399153

Alignment:
VVYDDDCHCAVACAATTDBVAC
--SWSTCTCTSWSTCTCWSW--

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 18
Similarity score: 0.0422644

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
WSWGAGASWSAGAGASWS-----

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0425861

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
----WSWGAGASWSAGAGASWS-

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0439386

Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
--WSWGAGASWSAGAGASWS---

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Dataset #: 1 Motif ID: 18 Motif name: C018

Original motif Reverse complement motif
Consensus sequence: AAMYAAAAAAAHA Consensus sequence: THTTTTTTTMYTT

Best Matches for Motif ID 18 (Highest to Lowest)

Motif ID: UP00028
Motif name: Tcfap2e_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0145388

Alignment:
HDCDBRAAAAAADD
-AAMYAAAAAAAHA

Original motif Reverse complement motif
Consensus sequence: HDCDBRAAAAAADD Consensus sequence: DDTTTTTTMBDGDH


Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0166921

Alignment:
VBDDAAAAAAAAMVBHH
----AAMYAAAAAAAHA

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV


Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0192633

Alignment:
ADDDYAWAACAAMAHH
-AAMYAAAAAAAHA--

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT


Motif ID: UP00134
Motif name: Hoxb13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0204511

Alignment:
VRHCCAATAAAAWHHV
-AAMYAAAAAAAHA--

Original motif Reverse complement motif
Consensus sequence: VRHCCAATAAAAWHHV Consensus sequence: VDHWTTTTATTGGDKB


Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0217367

Alignment:
HDHRTAAACAAAHDDD
-AAMYAAAAAAAHA--

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH


Dataset #: 1 Motif ID: 19 Motif name: C019

Original motif Reverse complement motif
Consensus sequence: MWYCCCAGCACTTGGGAGGCAG Consensus sequence: CTGCCTCCCAAGTGCTGGGMWR

Best Matches for Motif ID 19 (Highest to Lowest)

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.041956

Alignment:
YDYBDHTMCACGTGGADDBMDGT
MWYCCCAGCACTTGGGAGGCAG-

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.0441925

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
CTGCCTCCCAAGTGCTGGGMWR-

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.0552063

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
MWYCCCAGCACTTGGGAGGCAG

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.0596824

Alignment:
HTBVVVDGGACCACCCRGRDBG
MWYCCCAGCACTTGGGAGGCAG

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH


Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.0599404

Alignment:
DDHBHBSTCACGTGAHBBDHHM
CTGCCTCCCAAGTGCTGGGMWR

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM


Dataset #: 1 Motif ID: 20 Motif name: C020

Original motif Reverse complement motif
Consensus sequence: BSCVCCSCCVCSCCCACS Consensus sequence: SGTGGGSGVGGSGGVGSB

Best Matches for Motif ID 20 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0350167

Alignment:
HDBABCGBKRGYGGCGMSBHAK
SGTGGGSGVGGSGGVGSB----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 18
Similarity score: 0.0412841

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
-SGTGGGSGVGGSGGVGSB----

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0415056

Alignment:
BADHBDHCGCCCMCGCAHHDBBV
--BSCVCCSCCVCSCCCACS---

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 18
Similarity score: 0.0438926

Alignment:
VYWVVHCRCCACMCACGAHSBHH
-BSCVCCSCCVCSCCCACS----

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 18
Similarity score: 0.0475246

Alignment:
MHHHWHYTMCCHCCCACVAABVH
BSCVCCSCCVCSCCCACS-----

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Dataset #: 1 Motif ID: 21 Motif name: C021

Original motif Reverse complement motif
Consensus sequence: MKAGMVAGAKAGMK Consensus sequence: RYCTRTCTVYCTRY

Best Matches for Motif ID 21 (Highest to Lowest)

Motif ID: UP00101
Motif name: Sox12_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0269394

Alignment:
HDTMCTTTGTSTVDBB
--RYCTRTCTVYCTRY

Original motif Reverse complement motif
Consensus sequence: VVDBASACAAAGRADH Consensus sequence: HDTMCTTTGTSTVDBB


Motif ID: >UP00011
Motif name: Irf6_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0331495

Alignment:
VBBACTCYCGGKHDV
-MKAGMVAGAKAGMK

Original motif Reverse complement motif
Consensus sequence: VBBACTCYCGGKHDV Consensus sequence: VDDRCCGMGAGTBBB


Motif ID: UP00040
Motif name: Irf5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0341976

Alignment:
BHDAHCGAGARTHBV
-MKAGMVAGAKAGMK

Original motif Reverse complement motif
Consensus sequence: BHDAHCGAGARTHBV Consensus sequence: VBHAKTCTCGHTHHV


Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0359613

Alignment:
HVDDVCAGATGKYHBBV
MKAGMVAGAKAGMK---

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH


Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0368158

Alignment:
HBGYGTGTGTGCVRVD
--RYCTRTCTVYCTRY

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD


Dataset #: 1 Motif ID: 22 Motif name: C022

Original motif Reverse complement motif
Consensus sequence: BGCCYCBGSCYCCCSVS Consensus sequence: SVSGGGKGSCBGMGGCV

Best Matches for Motif ID 22 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 17
Similarity score: 0.0352062

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
BGCCYCBGSCYCCCSVS-----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0384374

Alignment:
BHHBHCCGCCCCDHHHH
BGCCYCBGSCYCCCSVS

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 17
Similarity score: 0.0394824

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
------SVSGGGKGSCBGMGGCV

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0470502

Alignment:
BDHHMCGCCCCCTHVBB
BGCCYCBGSCYCCCSVS

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 17
Similarity score: 0.0477827

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
------SVSGGGKGSCBGMGGCV

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Dataset #: 1 Motif ID: 23 Motif name: C023

Original motif Reverse complement motif
Consensus sequence: SSCCSCBHCSCCSS Consensus sequence: SSGGSGDBGSGGSS

Best Matches for Motif ID 23 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0233667

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
---SSCCSCBHCSCCSS-----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0308308

Alignment:
HVDVGGGHGGGGDBHB
SSGGSGDBGSGGSS--

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB


Motif ID: UP00013
Motif name: Gabpa_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0321962

Alignment:
DBVVDRSGGAWKVHKG
--SSGGSGDBGSGGSS

Original motif Reverse complement motif
Consensus sequence: CYDBYWTCCSMHBVVH Consensus sequence: DBVVDRSGGAWKVHKG


Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0322741

Alignment:
GKRGGGGGGGGGGBD
-SSGGSGDBGSGGSS

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0324541

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-------SSCCSCBHCSCCSS--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Dataset #: 1 Motif ID: 24 Motif name: C024

Original motif Reverse complement motif
Consensus sequence: TDAAYRWAAAAWYDAAHA Consensus sequence: THTTDMWTTTTWKMTTDA

Best Matches for Motif ID 24 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0410905

Alignment:
WBHHHHHMDATTGTTHDHDVHH
--THTTDMWTTTTWKMTTDA--

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0441479

Alignment:
VVYDDDCHCAVACAATTDBVAC
----TDAAYRWAAAAWYDAAHA

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0508186

Alignment:
HBHDVHDTCTTATCTHTDDHDV
THTTDMWTTTTWKMTTDA----

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0546986

Alignment:
HHHBBMGATAVHATCWVVDHVH
--TDAAYRWAAAAWYDAAHA--

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH


Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0553

Alignment:
MWSMBAARRATGCDCABHATGD
TDAAYRWAAAAWYDAAHA----

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR


Dataset #: 1 Motif ID: 25 Motif name: C025

Original motif Reverse complement motif
Consensus sequence: KMGAKAGAGMGAKM Consensus sequence: RRTCRCTCTRTCRR

Best Matches for Motif ID 25 (Highest to Lowest)

Motif ID: UP00080
Motif name: Gata5_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.036512

Alignment:
VVBHRAGATATCWDHBB
RRTCRCTCTRTCRR---

Original motif Reverse complement motif
Consensus sequence: VVBHRAGATATCWDHBB Consensus sequence: VVHHWGATATCTMHBBV


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0377627

Alignment:
VVYDDDCHCAVACAATTDBVAC
-----RRTCRCTCTRTCRR---

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 14
Similarity score: 0.0384238

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
---------KMGAKAGAGMGAKM

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Motif ID: UP00100
Motif name: Gata6_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0394703

Alignment:
HKCBSCGATATCGVBBC
RRTCRCTCTRTCRR---

Original motif Reverse complement motif
Consensus sequence: GBBVCGATATCGSVGYD Consensus sequence: HKCBSCGATATCGVBBC


Motif ID: UP00040
Motif name: Irf5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0405383

Alignment:
BHDAHCGAGARTHBV
KMGAKAGAGMGAKM-

Original motif Reverse complement motif
Consensus sequence: BHDAHCGAGARTHBV Consensus sequence: VBHAKTCTCGHTHHV


Dataset #: 1 Motif ID: 26 Motif name: C026

Original motif Reverse complement motif
Consensus sequence: KMGAGAKMKMGAGAKM Consensus sequence: RRTCTCRRRRTCTCRR

Best Matches for Motif ID 26 (Highest to Lowest)

Motif ID: UP00095
Motif name: Zfp691_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0454643

Alignment:
VHBDDAGGAGTCWBBTD
RRTCTCRRRRTCTCRR-

Original motif Reverse complement motif
Consensus sequence: DABBWGACTCCTHDVHV Consensus sequence: VHBDDAGGAGTCWBBTD


Motif ID: UP00037
Motif name: Zfp105_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0459821

Alignment:
HDMAVTTATTGARVCMH
KMGAGAKMKMGAGAKM-

Original motif Reverse complement motif
Consensus sequence: DYGVKTCAATAABTYDD Consensus sequence: HDMAVTTATTGARVCMH


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 16
Similarity score: 0.0470026

Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
------RRTCTCRRRRTCTCRR-

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Motif ID: UP00100
Motif name: Gata6_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0472484

Alignment:
HKCBSCGATATCGVBBC
RRTCTCRRRRTCTCRR-

Original motif Reverse complement motif
Consensus sequence: GBBVCGATATCGSVGYD Consensus sequence: HKCBSCGATATCGVBBC


Motif ID: UP00080
Motif name: Gata5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0489582

Alignment:
VVHHWGATATCTMHBBV
-KMGAGAKMKMGAGAKM

Original motif Reverse complement motif
Consensus sequence: VVBHRAGATATCWDHBB Consensus sequence: VVHHWGATATCTMHBBV


Dataset #: 1 Motif ID: 27 Motif name: C027

Original motif Reverse complement motif
Consensus sequence: MRCAGRGAAACCCTGTCTYDW Consensus sequence: WHKAGACAGGGTTTCMCTGKY

Best Matches for Motif ID 27 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 21
Similarity score: 0.0379369

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
-WHKAGACAGGGTTTCMCTGKY-

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 21
Similarity score: 0.0428251

Alignment:
HGDHVHKGACCACCCGGBGBGDB
--MRCAGRGAAACCCTGTCTYDW

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 21
Similarity score: 0.0432221

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
-WHKAGACAGGGTTTCMCTGKY-

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 21
Similarity score: 0.0454185

Alignment:
DVMHHDHKGACCCTCCTSVCBH
MRCAGRGAAACCCTGTCTYDW-

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH


Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 21
Similarity score: 0.0491194

Alignment:
HBHDVBWGATHBTATCRVBHHH
-WHKAGACAGGGTTTCMCTGKY

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH


Dataset #: 1 Motif ID: 28 Motif name: C028

Original motif Reverse complement motif
Consensus sequence: BVGASSCASAGVSABV Consensus sequence: VBTSVCTSTGSSTCVB

Best Matches for Motif ID 28 (Highest to Lowest)

Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0351716

Alignment:
HDHDDCCAGACABBHVH
BVGASSCASAGVSABV-

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 16
Similarity score: 0.0393573

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
---BVGASSCASAGVSABV---

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00013
Motif name: Gabpa_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0397911

Alignment:
CYDBYWTCCSMHBVVH
VBTSVCTSTGSSTCVB

Original motif Reverse complement motif
Consensus sequence: CYDBYWTCCSMHBVVH Consensus sequence: DBVVDRSGGAWKVHKG


Motif ID: UP00011
Motif name: Irf6_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0399886

Alignment:
DHDBTKGTTTCGHTHDD
-VBTSVCTSTGSSTCVB

Original motif Reverse complement motif
Consensus sequence: HDDAHCGAAACYAVDDD Consensus sequence: DHDBTKGTTTCGHTHDD


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 16
Similarity score: 0.0408182

Alignment:
GTVBDAATTGTVTGHGDDHKVB
--VBTSVCTSTGSSTCVB----

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Dataset #: 1 Motif ID: 29 Motif name: C029

Original motif Reverse complement motif
Consensus sequence: AAWWWAAAAWWWAA Consensus sequence: TTWWWTTTTWWWTT

Best Matches for Motif ID 29 (Highest to Lowest)

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0387466

Alignment:
HDDDATTTTATTKVRDB
TTWWWTTTTWWWTT---

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB


Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0414949

Alignment:
DDHBTTTTTTTTHDAVH
TTWWWTTTTWWWTT---

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH


Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0415039

Alignment:
VBDDAAAAAAAAMVBHH
---AAWWWAAAAWWWAA

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV


Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0434847

Alignment:
ADDDYAWAACAAMAHH
AAWWWAAAAWWWAA--

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT


Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.045306

Alignment:
HARTHAATTAWTAVDHD
-AAWWWAAAAWWWAA--

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH


Dataset #: 1 Motif ID: 30 Motif name: C030

Original motif Reverse complement motif
Consensus sequence: WYAAAAAMAAAAAAAAWAM Consensus sequence: YTWTTTTTTTTYTTTTTMW

Best Matches for Motif ID 30 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 19
Similarity score: 0.0369294

Alignment:
HHBDHDDAACAATDRHHHHHBW
--WYAAAAAMAAAAAAAAWAM-

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 19
Similarity score: 0.0399523

Alignment:
GTVBDAATTGTVTGHGDDHKVB
---YTWTTTTTTTTYTTTTTMW

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 19
Similarity score: 0.0431733

Alignment:
HBHDVHDTCTTATCTHTDDHDV
--YTWTTTTTTTTYTTTTTMW-

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 19
Similarity score: 0.0503657

Alignment:
HHHBBMGATAVHATCWVVDHVH
---WYAAAAAMAAAAAAAAWAM

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 19
Similarity score: 0.0507131

Alignment:
VYWVVHCRCCACMCACGAHSBHH
--WYAAAAAMAAAAAAAAWAM--

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Dataset #: 1 Motif ID: 31 Motif name: C031

Original motif Reverse complement motif
Consensus sequence: WHAAAMRWWYAAAMAWW Consensus sequence: WWTYTTTMWWKYTTTHW

Best Matches for Motif ID 31 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0458825

Alignment:
VBDDAAAAAAAAMVBHH
WHAAAMRWWYAAAMAWW

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV


Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0488194

Alignment:
DDHBTTTTTTTTHDAVH
WWTYTTTMWWKYTTTHW

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH


Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 17
Similarity score: 0.0501404

Alignment:
WBHHHHHMDATTGTTHDHDVHH
WWTYTTTMWWKYTTTHW-----

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH


Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0539477

Alignment:
DHDBTAWTAATTHAKTH
WWTYTTTMWWKYTTTHW

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH


Motif ID: UP00078
Motif name: Arid3a_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0545289

Alignment:
DHHYTTTAATTAAHBBV
WWTYTTTMWWKYTTTHW

Original motif Reverse complement motif
Consensus sequence: VBBHTTAATTAAAMHHH Consensus sequence: DHHYTTTAATTAAHBBV


Dataset #: 1 Motif ID: 32 Motif name: C032

Original motif Reverse complement motif
Consensus sequence: HWAAWYDAAAMWRWAMWR Consensus sequence: KWYTWKWYTTTDMWTTWH

Best Matches for Motif ID 32 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0461423

Alignment:
WBHHHHHMDATTGTTHDHDVHH
---KWYTWKWYTTTDMWTTWH-

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.050828

Alignment:
GTVBDAATTGTVTGHGDDHKVB
---HWAAWYDAAAMWRWAMWR-

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 18
Similarity score: 0.0516978

Alignment:
HBHDVHDTCTTATCTHTDDHDV
-KWYTWKWYTTTDMWTTWH---

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0517018

Alignment:
HBHDVBWGATHBTATCRVBHHH
----HWAAWYDAAAMWRWAMWR

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0667428

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
--HWAAWYDAAAMWRWAMWR---

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Dataset #: 1 Motif ID: 33 Motif name: C033

Original motif Reverse complement motif
Consensus sequence: WWAAWYAAAMRWAAAW Consensus sequence: WTTTWKYTTTMWTTWW

Best Matches for Motif ID 33 (Highest to Lowest)

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0226221

Alignment:
VVVWTTGTTTAMATTWD
-WTTTWKYTTTMWTTWW

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD


Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0262386

Alignment:
BDVTTTKTTTACWTWHH
-WTTTWKYTTTMWTTWW

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH


Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0287316

Alignment:
BBVTTTGTTTACATTDD
-WTTTWKYTTTMWTTWW

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD


Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0296838

Alignment:
ADDDYAWAACAAMAHH
WWAAWYAAAMRWAAAW

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT


Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0300495

Alignment:
VBDDAAAAAAAAMVBHH
-WWAAWYAAAMRWAAAW

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV


Dataset #: 1 Motif ID: 34 Motif name: C034

Original motif Reverse complement motif
Consensus sequence: SCACTGSGGAGSMAGAGS Consensus sequence: SCTCTRSCTCCSCAGTGS

Best Matches for Motif ID 34 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0434619

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
---SCACTGSGGAGSMAGAGS--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0468771

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
--SCTCTRSCTCCSCAGTGS--

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0486672

Alignment:
BADHBDHCGCCCMCGCAHHDBBV
---SCTCTRSCTCCSCAGTGS--

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0500626

Alignment:
VYWVVHCRCCACMCACGAHSBHH
--SCTCTRSCTCCSCAGTGS---

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0522233

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
-----SCTCTRSCTCCSCAGTGS

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Dataset #: 1 Motif ID: 35 Motif name: C035

Original motif Reverse complement motif
Consensus sequence: WWACCYKGTCTMRAAAWW Consensus sequence: WWTTTMYAGACRKGGTWW

Best Matches for Motif ID 35 (Highest to Lowest)

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0424694

Alignment:
HBHDVHDTCTTATCTHTDDHDV
----WWACCYKGTCTMRAAAWW

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0529352

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
---WWTTTMYAGACRKGGTWW--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 18
Similarity score: 0.0530184

Alignment:
YDYBDHTMCACGTGGADDBMDGT
WWTTTMYAGACRKGGTWW-----

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0572016

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
WWACCYKGTCTMRAAAWW-----

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.0574877

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
----WWTTTMYAGACRKGGTWW-

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Dataset #: 1 Motif ID: 36 Motif name: C036

Original motif Reverse complement motif
Consensus sequence: MKAGMKMGAGAKMKAGMK Consensus sequence: RRCTRRRTCTCRRRCTRY

Best Matches for Motif ID 36 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0426031

Alignment:
HDBABCGBKRGYGGCGMSBHAK
----RRCTRRRTCTCRRRCTRY

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0454827

Alignment:
GTVBDAATTGTVTGHGDDHKVB
----RRCTRRRTCTCRRRCTRY

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00526
Motif name: Foxn1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0473662

Alignment:
WHVBVVMACGCGCGTCDYHWDH
RRCTRRRTCTCRRRCTRY----

Original motif Reverse complement motif
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Consensus sequence: HDWHMHGACGCGCGTRBVVBHW


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0480971

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
--MKAGMKMGAGAKMKAGMK---

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0493902

Alignment:
VDWDARRGACGCGGWHGGAKHV
-RRCTRRRTCTCRRRCTRY---

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV


Dataset #: 1 Motif ID: 37 Motif name: C037

Original motif Reverse complement motif
Consensus sequence: SVCCGBCMCCSYCMCCVB Consensus sequence: BVGGYGKSGGYGBCGGVS

Best Matches for Motif ID 37 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 18
Similarity score: 0.0265916

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-BVGGYGKSGGYGBCGGVS---

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0363116

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
--BVGGYGKSGGYGBCGGVS---

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0376504

Alignment:
VYWVVHCRCCACMCACGAHSBHH
---SVCCGBCMCCSYCMCCVB--

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0409627

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
----BVGGYGKSGGYGBCGGVS-

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0454859

Alignment:
VMYDHDGMCCHCCKBGVVAAVH
----BVGGYGKSGGYGBCGGVS

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH


Dataset #: 1 Motif ID: 38 Motif name: C038

Original motif Reverse complement motif
Consensus sequence: RRRATCCDSCTGCCTYT Consensus sequence: AKAGGCAGSDGGATKKK

Best Matches for Motif ID 38 (Highest to Lowest)

Motif ID: UP00528
Motif name: Foxm1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0332889

Alignment:
VHVRCAYGATGCATCDTVVADTH
------AKAGGCAGSDGGATKKK

Original motif Reverse complement motif
Consensus sequence: HADTBVADGATGCATCMTGMVHB Consensus sequence: VHVRCAYGATGCATCDTVVADTH


Motif ID: UP00022
Motif name: Zfp740_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0415981

Alignment:
HVKDCCGGGGGGWADDD
AKAGGCAGSDGGATKKK

Original motif Reverse complement motif
Consensus sequence: DDDTWCCCCCCGGDRVH Consensus sequence: HVKDCCGGGGGGWADDD


Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.0467833

Alignment:
HVDDVCAGATGKYHBBV
AKAGGCAGSDGGATKKK

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 17
Similarity score: 0.0476081

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
---RRRATCCDSCTGCCTYT---

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 17
Similarity score: 0.0482666

Alignment:
DDRMHBACGCGYGCGTDGBBDB
-RRRATCCDSCTGCCTYT----

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD


Dataset #: 1 Motif ID: 39 Motif name: C039

Original motif Reverse complement motif
Consensus sequence: SMAGRSCAGSSYGGBS Consensus sequence: SBCCKSSCTGSMCTRS

Best Matches for Motif ID 39 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 16
Similarity score: 0.0381161

Alignment:
HTBVVVDGGACCACCCRGRDBG
-----SMAGRSCAGSSYGGBS-

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 16
Similarity score: 0.0406922

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
---SBCCKSSCTGSMCTRS----

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0416812

Alignment:
HVHBVTGTCTGGDDHDD
-SBCCKSSCTGSMCTRS

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD


Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0417968

Alignment:
HDGHHBHRGACCACCCGSVDVG
-----SMAGRSCAGSSYGGBS-

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH


Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 16
Similarity score: 0.0424976

Alignment:
YBVDMGTGGGTGGTCKVVBVBBT
--SBCCKSSCTGSMCTRS-----

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT


Dataset #: 1 Motif ID: 40 Motif name: C040

Original motif Reverse complement motif
Consensus sequence: RSTGASYTCMARSYCAGY Consensus sequence: KCTGMSKTYGAMSTCASM

Best Matches for Motif ID 40 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 18
Similarity score: 0.0426851

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
RSTGASYTCMARSYCAGY----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0443113

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
-----KCTGMSKTYGAMSTCASM

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0450319

Alignment:
DTVBDDRGACCACCCAGDWDGBH
----RSTGASYTCMARSYCAGY-

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 18
Similarity score: 0.0455665

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
KCTGMSKTYGAMSTCASM-----

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0457782

Alignment:
VYWVVHCRCCACMCACGAHSBHH
---RSTGASYTCMARSYCAGY--

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Dataset #: 1 Motif ID: 41 Motif name: C041

Original motif Reverse complement motif
Consensus sequence: CSGAGGCMKAGGCASS Consensus sequence: SSTGCCTYRGCCTCSG

Best Matches for Motif ID 41 (Highest to Lowest)

Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 16
Similarity score: 0.0297471

Alignment:
HDTBHHCCHTAGCAACVVDHHHH
--SSTGCCTYRGCCTCSG-----

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH


Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0308327

Alignment:
VHYTCCDWCCGCGTCMMTHWHV
-SSTGCCTYRGCCTCSG-----

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV


Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 16
Similarity score: 0.0317547

Alignment:
DBBVDDDRTRGCGTCBBYTHGA
-SSTGCCTYRGCCTCSG-----

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD


Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0317742

Alignment:
DHHDGGGCGRGGKHBH
CSGAGGCMKAGGCASS

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH


Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0321641

Alignment:
BHVDCCCCDCCCBDBH
CSGAGGCMKAGGCASS

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB


Dataset #: 1 Motif ID: 42 Motif name: C042

Original motif Reverse complement motif
Consensus sequence: WGTCCKRGAACYMACTCW Consensus sequence: WGAGTRMGTTCKRGGACW

Best Matches for Motif ID 42 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0266184

Alignment:
YBVDMGTGGGTGGTCKVVBVBBT
----WGAGTRMGTTCKRGGACW-

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT


Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0330025

Alignment:
HDTBHHCCHTAGCAACVVDHHHH
----WGTCCKRGAACYMACTCW-

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 18
Similarity score: 0.03417

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-WGTCCKRGAACYMACTCW----

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0347873

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
----WGAGTRMGTTCKRGGACW-

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.035399

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
----WGTCCKRGAACYMACTCW-

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Dataset #: 1 Motif ID: 43 Motif name: C043

Original motif Reverse complement motif
Consensus sequence: WWAAWAAAAAARAATW Consensus sequence: WATTMTTTTTTWTTWW

Best Matches for Motif ID 43 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0232401

Alignment:
VBDDAAAAAAAAMVBHH
-WWAAWAAAAAARAATW

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV


Motif ID: UP00054
Motif name: Tcf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0288687

Alignment:
BHHASATCAAAGGAHHH
-WWAAWAAAAAARAATW

Original motif Reverse complement motif
Consensus sequence: BHHASATCAAAGGAHHH Consensus sequence: HHHTCCTTTGATSTHHV


Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0296812

Alignment:
DHDBTAWTAATTHAKTH
-WATTMTTTTTTWTTWW

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH


Motif ID: UP00051
Motif name: Sox8_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0320831

Alignment:
DDATBWATTGTTHHDDD
-WATTMTTTTTTWTTWW

Original motif Reverse complement motif
Consensus sequence: DDATBWATTGTTHHDDD Consensus sequence: DDDHDAACAATWBATDD


Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0327018

Alignment:
HDTYTTGTTWTKDDDT
WATTMTTTTTTWTTWW

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT


Dataset #: 1 Motif ID: 44 Motif name: C044

Original motif Reverse complement motif
Consensus sequence: BVAGAGGCAGRVSGATB Consensus sequence: BATCSVMCTGCCTCTVB

Best Matches for Motif ID 44 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 17
Similarity score: 0.0438724

Alignment:
VDWDARRGACGCGGWHGGAKHV
----BVAGAGGCAGRVSGATB-

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV


Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 17
Similarity score: 0.046578

Alignment:
VMYDHDGMCCHCCKBGVVAAVH
-BATCSVMCTGCCTCTVB----

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH


Motif ID: UP00031
Motif name: Zbtb3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 0.046833

Alignment:
DDBBBCACTGCABTBBB
BATCSVMCTGCCTCTVB

Original motif Reverse complement motif
Consensus sequence: DDBBBCACTGCABTBBB Consensus sequence: BBBAVTGCAGTGBBVDD


Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 17
Similarity score: 0.049551

Alignment:
TCDAMVBGACGCMAKDDDVBBD
----BVAGAGGCAGRVSGATB-

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD


Motif ID: UP00095
Motif name: Zfp691_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0496109

Alignment:
DABBWGACTCCTHDVHV
BATCSVMCTGCCTCTVB

Original motif Reverse complement motif
Consensus sequence: DABBWGACTCCTHDVHV Consensus sequence: VHBDDAGGAGTCWBBTD


Dataset #: 1 Motif ID: 45 Motif name: C045

Original motif Reverse complement motif
Consensus sequence: RYAGMCMKGKCTRY Consensus sequence: MKAGYCYRGRCTKK

Best Matches for Motif ID 45 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0303562

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-RYAGMCMKGKCTRY-------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00086
Motif name: Irf3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0355506

Alignment:
DDAGAADGGDSCDV
RYAGMCMKGKCTRY

Original motif Reverse complement motif
Consensus sequence: DDAGAADGGDSCDV Consensus sequence: BHGSDCCDTTCTHH


Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0391606

Alignment:
HVDVGGGHGGGGDBHB
-MKAGYCYRGRCTKK-

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB


Motif ID: UP00084
Motif name: Gmeb1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0399089

Alignment:
BVVDVRYACGTRYVBHB
--MKAGYCYRGRCTKK-

Original motif Reverse complement motif
Consensus sequence: BHBBKKACGTMMVDBVB Consensus sequence: BVVDVRYACGTRYVBHB


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 14
Similarity score: 0.0406925

Alignment:
GTVBDAATTGTVTGHGDDHKVB
------MKAGYCYRGRCTKK--

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Dataset #: 1 Motif ID: 46 Motif name: C046

Original motif Reverse complement motif
Consensus sequence: KSTGKCCTRGAACWSM Consensus sequence: YSWGTTCKAGGYCASY

Best Matches for Motif ID 46 (Highest to Lowest)

Motif ID: UP00043
Motif name: Bcl6b_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.033819

Alignment:
DCTTTCKAGGAATHHV
KSTGKCCTRGAACWSM

Original motif Reverse complement motif
Consensus sequence: DCTTTCKAGGAATHHV Consensus sequence: VHHATTCCTYGAAAGD


Motif ID: UP00414
Motif name: Ets1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0383006

Alignment:
BDDDHACCGGAARTVDD
KSTGKCCTRGAACWSM-

Original motif Reverse complement motif
Consensus sequence: BDDDHACCGGAARTVDD Consensus sequence: DDBAMTTCCGGTDHDHB


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 16
Similarity score: 0.0428174

Alignment:
DVVTTVGTGGGHGGYAMHWHHHY
---YSWGTTCKAGGYCASY----

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 16
Similarity score: 0.0436721

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
--YSWGTTCKAGGYCASY-----

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00213
Motif name: Hoxa9
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0441221

Alignment:
WDTAWTTTWATGKCCGD
-YSWGTTCKAGGYCASY

Original motif Reverse complement motif
Consensus sequence: DCGGYCATWAAAWTADW Consensus sequence: WDTAWTTTWATGKCCGD


Dataset #: 1 Motif ID: 47 Motif name: C047

Original motif Reverse complement motif
Consensus sequence: TSGAAMTCACTMKGTASA Consensus sequence: TSTACRYAGTGAYTTCSA

Best Matches for Motif ID 47 (Highest to Lowest)

Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0369958

Alignment:
DCATDBTGHGCATKMTTBRSWR
---TSGAAMTCACTMKGTASA-

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR


Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.045149

Alignment:
TCDAMVBGACGCMAKDDDVBBD
----TSTACRYAGTGAYTTCSA

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0467709

Alignment:
VVYDDDCHCAVACAATTDBVAC
--TSTACRYAGTGAYTTCSA--

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.047063

Alignment:
DVTTVVCVYGGHGGYCHHDMYB
--TSTACRYAGTGAYTTCSA--

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 18
Similarity score: 0.0479788

Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
-----TSGAAMTCACTMKGTASA

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Dataset #: 1 Motif ID: 48 Motif name: C048

Original motif Reverse complement motif
Consensus sequence: SGAGGCWSWGGCAGSC Consensus sequence: GSCTGCCWSWGCCTCS

Best Matches for Motif ID 48 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 16
Similarity score: 0.0237024

Alignment:
VDWDARRGACGCGGWHGGAKHV
------SGAGGCWSWGGCAGSC

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV


Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0327172

Alignment:
DVMHHDHKGACCCTCCTSVCBH
GSCTGCCWSWGCCTCS------

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 16
Similarity score: 0.034796

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
---SGAGGCWSWGGCAGSC----

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 16
Similarity score: 0.036242

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
---GSCTGCCWSWGCCTCS---

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0393403

Alignment:
HDTBHHCCHTAGCAACVVDHHHH
-GSCTGCCWSWGCCTCS------

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH


Dataset #: 1 Motif ID: 49 Motif name: C049

Original motif Reverse complement motif
Consensus sequence: WAWWAAAATAAWT Consensus sequence: AWTTATTTTWWTW

Best Matches for Motif ID 49 (Highest to Lowest)

Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0235016

Alignment:
ADDDYAWAACAAMAHH
-WAWWAAAATAAWT--

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT


Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0251228

Alignment:
HHWAWGTAAAYAAAVDB
--WAWWAAAATAAWT--

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH


Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 13
Similarity score: 0.0269927

Alignment:
HDDDATTTTATTKVRDB
AWTTATTTTWWTW----

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB


Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0270626

Alignment:
DWAATRTAAACAAWVVB
--WAWWAAAATAAWT--

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD


Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0290157

Alignment:
HHHTTRTTDTTTKDH
-AWTTATTTTWWTW-

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH


Dataset #: 1 Motif ID: 50 Motif name: C050

Original motif Reverse complement motif
Consensus sequence: CBGCCKCYSCCTCYMG Consensus sequence: CYKGAGGSMGRGGCVG

Best Matches for Motif ID 50 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 16
Similarity score: 0.0274857

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
-----CBGCCKCYSCCTCYMG-

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 16
Similarity score: 0.0294264

Alignment:
VHYTCCDWCCGCGTCMMTHWHV
--CBGCCKCYSCCTCYMG----

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV


Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0295783

Alignment:
BHHDYGGGGGGGGBVD
CYKGAGGSMGRGGCVG

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD


Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0315534

Alignment:
HVDVGGGHGGGGDBHB
CYKGAGGSMGRGGCVG

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 16
Similarity score: 0.0322386

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-----CBGCCKCYSCCTCYMG--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Dataset #: 1 Motif ID: 51 Motif name: C051

Original motif Reverse complement motif
Consensus sequence: SGCCCCCHCCCS Consensus sequence: SGGGHGGGGGCS

Best Matches for Motif ID 51 (Highest to Lowest)

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.00935805

Alignment:
DBCCCCCCCCCCMYC
-SGCCCCCHCCCS--

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD


Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0122535

Alignment:
DHHDGGGCGRGGKHBH
---SGGGHGGGGGCS-

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH


Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.0145224

Alignment:
HVBCCCCCCCCMHHHB
-SGCCCCCHCCCS---

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0145616

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
---SGCCCCCHCCCS-------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 12
Similarity score: 0.0226961

Alignment:
VYWVVHCRCCACMCACGAHSBHH
---SGCCCCCHCCCS--------

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Dataset #: 1 Motif ID: 52 Motif name: C052

Original motif Reverse complement motif
Consensus sequence: GAGTBVSAGGCMAGVC Consensus sequence: GVCTYGCCTSVVACTC

Best Matches for Motif ID 52 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 16
Similarity score: 0.0423398

Alignment:
HDBABCGBKRGYGGCGMSBHAK
----GAGTBVSAGGCMAGVC--

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 16
Similarity score: 0.047746

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
--GVCTYGCCTSVVACTC-----

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00064
Motif name: Sox18_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0490125

Alignment:
DBVBTRAATTYADDHV
GAGTBVSAGGCMAGVC

Original motif Reverse complement motif
Consensus sequence: DBVBTRAATTYADDHV Consensus sequence: VDHDTKAATTMABBBH


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 16
Similarity score: 0.0499529

Alignment:
BADHBDHCGCCCMCGCAHHDBBV
GVCTYGCCTSVVACTC-------

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0535021

Alignment:
MHHHWHYTMCCHCCCACVAABVH
GAGTBVSAGGCMAGVC-------

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Dataset #: 1 Motif ID: 53 Motif name: C053

Original motif Reverse complement motif
Consensus sequence: RMACRGAGAAAYCCTGKY Consensus sequence: MRCAGGMTTTCTCKGTYK

Best Matches for Motif ID 53 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0388232

Alignment:
HGDHVHKGACCACCCGGBGBGDB
--MRCAGGMTTTCTCKGTYK---

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.0410442

Alignment:
HDTBHHCCHTAGCAACVVDHHHH
----RMACRGAGAAAYCCTGKY-

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH


Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0413339

Alignment:
DDRMHBACGCGYGCGTDGBBDB
---MRCAGGMTTTCTCKGTYK-

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0440408

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
RMACRGAGAAAYCCTGKY-----

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0442508

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
-RMACRGAGAAAYCCTGKY---

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH


Dataset #: 1 Motif ID: 54 Motif name: C054

Original motif Reverse complement motif
Consensus sequence: SSCCDCCCCCCCSS Consensus sequence: SSGGGGGGGHGGSS

Best Matches for Motif ID 54 (Highest to Lowest)

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0162118

Alignment:
HBBBCCGCCCCWHHHV
--SSCCDCCCCCCCSS

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0185646

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
---SSCCDCCCCCCCSS-----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0201409

Alignment:
DBCCCCCCCCCCMYC
-SSCCDCCCCCCCSS

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD


Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0221949

Alignment:
HHHHDGGGGCGGDBHDV
SSGGGGGGGHGGSS---

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV


Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0265213

Alignment:
HVBCCCCCCCCMHHHB
-SSCCDCCCCCCCSS-

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD


Dataset #: 1 Motif ID: 55 Motif name: C055

Original motif Reverse complement motif
Consensus sequence: MKAGAGMKMKAGAGMK Consensus sequence: RYCTCTRRRRCTCTRR

Best Matches for Motif ID 55 (Highest to Lowest)

Motif ID: UP00101
Motif name: Sox12_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.039204

Alignment:
VVDBASACAAAGRADH
MKAGAGMKMKAGAGMK

Original motif Reverse complement motif
Consensus sequence: VVDBASACAAAGRADH Consensus sequence: HDTMCTTTGTSTVDBB


Motif ID: UP00080
Motif name: Gata5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0398738

Alignment:
VVBHRAGATATCWDHBB
-MKAGAGMKMKAGAGMK

Original motif Reverse complement motif
Consensus sequence: VVBHRAGATATCWDHBB Consensus sequence: VVHHWGATATCTMHBBV


Motif ID: UP00019
Motif name: Zbtb12_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0427919

Alignment:
BBGATCTAGAACBKHDB
-RYCTCTRRRRCTCTRR

Original motif Reverse complement motif
Consensus sequence: BDHRBGTTCTAGATCVB Consensus sequence: BBGATCTAGAACBKHDB


Motif ID: UP00075
Motif name: Sox15_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0433178

Alignment:
HDDDDAACAATWRRBHD
-MKAGAGMKMKAGAGMK

Original motif Reverse complement motif
Consensus sequence: HDDDDAACAATWRRBHD Consensus sequence: DHVKMWATTGTTHDHDH


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 16
Similarity score: 0.0454282

Alignment:
VYWVVHCRCCACMCACGAHSBHH
-------RYCTCTRRRRCTCTRR

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Dataset #: 1 Motif ID: 56 Motif name: C056

Original motif Reverse complement motif
Consensus sequence: AWMAAAYWRAMAAWH Consensus sequence: HWTTYTKWMTTTYWT

Best Matches for Motif ID 56 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0213582

Alignment:
VBDDAAAAAAAAMVBHH
-AWMAAAYWRAMAAWH-

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV


Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0251847

Alignment:
HDYAAAHAAMAADHD
AWMAAAYWRAMAAWH

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH


Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0274993

Alignment:
DBTHHAAAAAAAAVHDH
-AWMAAAYWRAMAAWH-

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH


Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.027785

Alignment:
HARTHAATTAWTAVDHD
-AWMAAAYWRAMAAWH-

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH


Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.02926

Alignment:
HDDDATTTTATTKVRDB
-HWTTYTKWMTTTYWT-

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB


Dataset #: 1 Motif ID: 57 Motif name: C057

Original motif Reverse complement motif
Consensus sequence: WRMARYAAMARYAAMAWH Consensus sequence: HWTRTTMKTYTTMKTYKW

Best Matches for Motif ID 57 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 18
Similarity score: 0.0381479

Alignment:
HHBDHDDAACAATDRHHHHHBW
-WRMARYAAMARYAAMAWH---

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.052401

Alignment:
VVYDDDCHCAVACAATTDBVAC
----WRMARYAAMARYAAMAWH

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0540821

Alignment:
DCATDBTGHGCATKMTTBRSWR
--HWTRTTMKTYTTMKTYKW--

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR


Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0542401

Alignment:
HBHDVHDTCTTATCTHTDDHDV
--HWTRTTMKTYTTMKTYKW--

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0552305

Alignment:
HHHBBMGATAVHATCWVVDHVH
---WRMARYAAMARYAAMAWH-

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH


Dataset #: 1 Motif ID: 58 Motif name: C058

Original motif Reverse complement motif
Consensus sequence: CYCCBCSGVCYCCBC Consensus sequence: GVGGMGVCSGBGGMG

Best Matches for Motif ID 58 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 15
Similarity score: 0.0246506

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-GVGGMGVCSGBGGMG------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00036
Motif name: Myf6_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0266507

Alignment:
GGDGBGVCTGTKVVB
GVGGMGVCSGBGGMG

Original motif Reverse complement motif
Consensus sequence: VVVRACAGVCBCDCC Consensus sequence: GGDGBGVCTGTKVVB


Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0296277

Alignment:
BHHBHCCGCCCCDHHHH
CYCCBCSGVCYCCBC--

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV


Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0309574

Alignment:
BDHHMCGCCCCCTHVBB
--CYCCBCSGVCYCCBC

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0331968

Alignment:
BHVDCCCCDCCCBDBH
CYCCBCSGVCYCCBC-

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB


Dataset #: 1 Motif ID: 59 Motif name: C059

Original motif Reverse complement motif
Consensus sequence: SYCCDCCCCCRG Consensus sequence: CMGGGGGDGGKS

Best Matches for Motif ID 59 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 12
Similarity score: 0.0197332

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
------SYCCDCCCCCRG----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0224264

Alignment:
HHHHDGGGGCGGDBHDV
--CMGGGGGDGGKS---

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV


Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 12
Similarity score: 0.0231684

Alignment:
HVDVGGGHGGGGDBHB
CMGGGGGDGGKS----

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB


Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.023387

Alignment:
BHHHWGGGGCGGBBVH
--CMGGGGGDGGKS--

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 12
Similarity score: 0.0246213

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
-----CMGGGGGDGGKS------

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Dataset #: 1 Motif ID: 60 Motif name: C060

Original motif Reverse complement motif
Consensus sequence: SMGGCAKMGGCAKS Consensus sequence: SYTGCCYYTGCCYS

Best Matches for Motif ID 60 (Highest to Lowest)

Motif ID: UP00010
Motif name: Tcfap2b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0309254

Alignment:
HHKGCCYSRGGCWAD
SYTGCCYYTGCCYS-

Original motif Reverse complement motif
Consensus sequence: DTWGCCKSMGGCRHH Consensus sequence: HHKGCCYSRGGCWAD


Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0349665

Alignment:
HHBVHTGACCTTGVDHD
---SYTGCCYYTGCCYS

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD


Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 14
Similarity score: 0.0406726

Alignment:
DVMHHDHKGACCCTCCTSVCBH
-----SYTGCCYYTGCCYS---

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH


Motif ID: UP00028
Motif name: Tcfap2e_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0419455

Alignment:
DTHGCCTSAGGCHHH
SYTGCCYYTGCCYS-

Original motif Reverse complement motif
Consensus sequence: HHHGCCTSAGGCDAD Consensus sequence: DTHGCCTSAGGCHHH


Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0436588

Alignment:
BHVDCCCCDCCCBDBH
SYTGCCYYTGCCYS--

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB


Dataset #: 1 Motif ID: 61 Motif name: C061

Original motif Reverse complement motif
Consensus sequence: MRGMMBAGGCHGGCCK Consensus sequence: RGGCCDGCCTBRRCMY

Best Matches for Motif ID 61 (Highest to Lowest)

Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0354983

Alignment:
DDRMHBACGCGYGCGTDGBBDB
MRGMMBAGGCHGGCCK------

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 16
Similarity score: 0.0371599

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-----RGGCCDGCCTBRRCMY--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0397188

Alignment:
BBBDVVRGACCACCCAVGABBAB
------RGGCCDGCCTBRRCMY-

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB


Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 16
Similarity score: 0.0410046

Alignment:
ABBBBVVRGACCACCCACRDBBM
-------RGGCCDGCCTBRRCMY

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT


Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0416624

Alignment:
VDWDARRGACGCGGWHGGAKHV
-----MRGMMBAGGCHGGCCK-

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV


Dataset #: 1 Motif ID: 62 Motif name: C062

Original motif Reverse complement motif
Consensus sequence: WWAMAWRMAMAYWAAHWW Consensus sequence: WWDTTWMTRTRKWTYTWW

Best Matches for Motif ID 62 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0496099

Alignment:
WBHHHHHMDATTGTTHDHDVHH
-WWDTTWMTRTRKWTYTWW---

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH


Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0618489

Alignment:
HBHDVHDTCTTATCTHTDDHDV
---WWDTTWMTRTRKWTYTWW-

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0618699

Alignment:
MWSMBAARRATGCDCABHATGD
-WWAMAWRMAMAYWAAHWW---

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0626028

Alignment:
VVYDDDCHCAVACAATTDBVAC
---WWAMAWRMAMAYWAAHWW-

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.065917

Alignment:
HHHBBMGATAVHATCWVVDHVH
---WWAMAWRMAMAYWAAHWW-

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH


Dataset #: 1 Motif ID: 63 Motif name: C063

Original motif Reverse complement motif
Consensus sequence: MAAKMWAAAAWKHAA Consensus sequence: TTHRWTTTTWYRTTY

Best Matches for Motif ID 63 (Highest to Lowest)

Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0344456

Alignment:
HDTYTTGTTWTKDDDT
TTHRWTTTTWYRTTY-

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT


Motif ID: UP00039
Motif name: Foxj3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0345147

Alignment:
DVHWDTGTTWTGDTBDH
TTHRWTTTTWYRTTY--

Original motif Reverse complement motif
Consensus sequence: HDBAHCAWAACADWDVD Consensus sequence: DVHWDTGTTWTGDTBDH


Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0355538

Alignment:
DDHBTTTTTTTTHDAVH
--TTHRWTTTTWYRTTY

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH


Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0356888

Alignment:
DHDBTAWTAATTHAKTH
--TTHRWTTTTWYRTTY

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH


Motif ID: UP00213
Motif name: Hoxa9
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0367298

Alignment:
WDTAWTTTWATGKCCGD
TTHRWTTTTWYRTTY--

Original motif Reverse complement motif
Consensus sequence: DCGGYCATWAAAWTADW Consensus sequence: WDTAWTTTWATGKCCGD


Dataset #: 1 Motif ID: 64 Motif name: C064

Original motif Reverse complement motif
Consensus sequence: DAAAKAAAAMAAK Consensus sequence: RTTYTTTTRTTTD

Best Matches for Motif ID 64 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0175156

Alignment:
HHVBYTTTTTTTTDDVV
--RTTYTTTTRTTTD--

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV


Motif ID: UP00028
Motif name: Tcfap2e_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0210094

Alignment:
HDCDBRAAAAAADD
DAAAKAAAAMAAK-

Original motif Reverse complement motif
Consensus sequence: HDCDBRAAAAAADD Consensus sequence: DDTTTTTTMBDGDH


Motif ID: UP00025
Motif name: Foxk1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.030589

Alignment:
HDDTGTTKTTKTHHD
--RTTYTTTTRTTTD

Original motif Reverse complement motif
Consensus sequence: HHHAYAAYAACAHHH Consensus sequence: HDDTGTTKTTKTHHD


Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.0322312

Alignment:
DDHBTTTTTTTTHDAVH
-RTTYTTTTRTTTD---

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH


Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0326524

Alignment:
HDHHTTTTATTKKHDD
---RTTYTTTTRTTTD

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD


Dataset #: 1 Motif ID: 65 Motif name: C065

Original motif Reverse complement motif
Consensus sequence: MSTGAGWTCMASK Consensus sequence: YSTRGAWCTCASR

Best Matches for Motif ID 65 (Highest to Lowest)

Motif ID: UP00080
Motif name: Gata5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0144176

Alignment:
VVHHWGATATCTMHBBV
--MSTGAGWTCMASK--

Original motif Reverse complement motif
Consensus sequence: VVBHRAGATATCWDHBB Consensus sequence: VVHHWGATATCTMHBBV


Motif ID: UP00148
Motif name: Hdx
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.0160219

Alignment:
DDKDHGAAATCAHHBHV
-YSTRGAWCTCASR---

Original motif Reverse complement motif
Consensus sequence: DDKDHGAAATCAHHBHV Consensus sequence: BDBDHTGATTTCDHYDD


Motif ID: UP00066
Motif name: Hnf4a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0188193

Alignment:
BDBVMGGGGTCAABHDV
--MSTGAGWTCMASK--

Original motif Reverse complement motif
Consensus sequence: BDBVMGGGGTCAABHDV Consensus sequence: BHHVTTGACCCCYVVDB


Motif ID: UP00020
Motif name: Atf1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0224584

Alignment:
DMDMTGACGTCAKHBD
--MSTGAGWTCMASK-

Original motif Reverse complement motif
Consensus sequence: DBDRTGACGTCAYHRD Consensus sequence: DMDMTGACGTCAKHBD


Motif ID: UP00054
Motif name: Tcf7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 13
Similarity score: 0.0232284

Alignment:
BHHASATCAAAGGAHHH
YSTRGAWCTCASR----

Original motif Reverse complement motif
Consensus sequence: BHHASATCAAAGGAHHH Consensus sequence: HHHTCCTTTGATSTHHV


Dataset #: 1 Motif ID: 66 Motif name: C066

Original motif Reverse complement motif
Consensus sequence: MAMTCCCMSKGCCTCTK Consensus sequence: YAGAGGCRSYGGGARTR

Best Matches for Motif ID 66 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 17
Similarity score: 0.03808

Alignment:
VDWDARRGACGCGGWHGGAKHV
-----YAGAGGCRSYGGGARTR

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 17
Similarity score: 0.0499224

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
---YAGAGGCRSYGGGARTR---

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0510562

Alignment:
HHHHDGGGGCGGDBHDV
YAGAGGCRSYGGGARTR

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 17
Similarity score: 0.0517099

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
---YAGAGGCRSYGGGARTR---

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 17
Similarity score: 0.0522208

Alignment:
HDBABCGBKRGYGGCGMSBHAK
--YAGAGGCRSYGGGARTR---

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Dataset #: 1 Motif ID: 67 Motif name: C067

Original motif Reverse complement motif
Consensus sequence: WDAAAAAARKAAAD Consensus sequence: DTTTRKTTTTTTDW

Best Matches for Motif ID 67 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0232781

Alignment:
VBDDAAAAAAAAMVBHH
---WDAAAAAARKAAAD

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV


Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0263721

Alignment:
HDYAAAHAAMAADHD
-WDAAAAAARKAAAD

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH


Motif ID: UP00014
Motif name: Sox17_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0301541

Alignment:
DDWTBAATTGTTDDB
-DTTTRKTTTTTTDW

Original motif Reverse complement motif
Consensus sequence: VDDAACAATTVAWHD Consensus sequence: DDWTBAATTGTTDDB


Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0307495

Alignment:
HBDDDAACAAAGRVBHH
---WDAAAAAARKAAAD

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH


Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0312958

Alignment:
HBDDRAACAAAGRABHH
---WDAAAAAARKAAAD

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH


Dataset #: 1 Motif ID: 68 Motif name: C068

Original motif Reverse complement motif
Consensus sequence: BGCYKCTGCMTCCM Consensus sequence: YGGAYGCAGYKGCV

Best Matches for Motif ID 68 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0242069

Alignment:
VHYTCCDWCCGCGTCMMTHWHV
---BGCYKCTGCMTCCM-----

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.02581

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
---BGCYKCTGCMTCCM-----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00031
Motif name: Zbtb3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0294733

Alignment:
BBBAVTGCAGTGBBVDD
-YGGAYGCAGYKGCV--

Original motif Reverse complement motif
Consensus sequence: DDBBBCACTGCABTBBB Consensus sequence: BBBAVTGCAGTGBBVDD


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 14
Similarity score: 0.0297174

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
BGCYKCTGCMTCCM---------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0300511

Alignment:
BHHBHCCGCCCCDHHHH
BGCYKCTGCMTCCM---

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV


Dataset #: 1 Motif ID: 69 Motif name: C069

Original motif Reverse complement motif
Consensus sequence: AHAAMAAYWDYAAMAAHD Consensus sequence: DHTTYTTMDWMTTYTTHT

Best Matches for Motif ID 69 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0547241

Alignment:
HHBDHDDAACAATDRHHHHHBW
--AHAAMAAYWDYAAMAAHD--

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH


Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0556229

Alignment:
HBHDVHDTCTTATCTHTDDHDV
-DHTTYTTMDWMTTYTTHT---

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0564427

Alignment:
VVYDDDCHCAVACAATTDBVAC
AHAAMAAYWDYAAMAAHD----

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.058939

Alignment:
HHHBBMGATAVHATCWVVDHVH
-AHAAMAAYWDYAAMAAHD---

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH


Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.064465

Alignment:
DCATDBTGHGCATKMTTBRSWR
-DHTTYTTMDWMTTYTTHT---

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR


Dataset #: 1 Motif ID: 70 Motif name: C070

Original motif Reverse complement motif
Consensus sequence: GVGABAGAVAGASVK Consensus sequence: RBSTCTVTCTBTCVC

Best Matches for Motif ID 70 (Highest to Lowest)

Motif ID: >UP00011
Motif name: Irf6_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0371635

Alignment:
VBBACTCYCGGKHDV
RBSTCTVTCTBTCVC

Original motif Reverse complement motif
Consensus sequence: VBBACTCYCGGKHDV Consensus sequence: VDDRCCGMGAGTBBB


Motif ID: UP00101
Motif name: Sox12_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0394179

Alignment:
VVDBASACAAAGRADH
-GVGABAGAVAGASVK

Original motif Reverse complement motif
Consensus sequence: VVDBASACAAAGRADH Consensus sequence: HDTMCTTTGTSTVDBB


Motif ID: UP00018
Motif name: Irf4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0452113

Alignment:
VVBAYTCTCGGWHDB
RBSTCTVTCTBTCVC

Original motif Reverse complement motif
Consensus sequence: VVBAYTCTCGGWHDB Consensus sequence: BHHWCCGAGAMTVVB


Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0480451

Alignment:
VBDDAAAAAAAAMVBHH
GVGABAGAVAGASVK--

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV


Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 15
Similarity score: 0.0486114

Alignment:
HVHBVTGTCTGGDDHDD
--RBSTCTVTCTBTCVC

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD


Dataset #: 1 Motif ID: 71 Motif name: C071

Original motif Reverse complement motif
Consensus sequence: SVCCACSVSCACCBS Consensus sequence: SBGGTGSVSGTGGVS

Best Matches for Motif ID 71 (Highest to Lowest)

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0205519

Alignment:
HVBCCCCCCCCMHHHB
-SVCCACSVSCACCBS

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD


Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.020698

Alignment:
BDHHMCGCCCCCTHVBB
SVCCACSVSCACCBS--

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0211186

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-SBGGTGSVSGTGGVS------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.022472

Alignment:
VYWVVHCRCCACMCACGAHSBHH
------SVCCACSVSCACCBS--

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 15
Similarity score: 0.0250115

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
------SVCCACSVSCACCBS--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Dataset #: 1 Motif ID: 72 Motif name: C072

Original motif Reverse complement motif
Consensus sequence: SWAGCCVDGGCW Consensus sequence: WGCCHVGGCTWS

Best Matches for Motif ID 72 (Highest to Lowest)

Motif ID: UP00010
Motif name: Tcfap2b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.00558864

Alignment:
HHKGCCYSRGGCWAD
-SWAGCCVDGGCW--

Original motif Reverse complement motif
Consensus sequence: DTWGCCKSMGGCRHH Consensus sequence: HHKGCCYSRGGCWAD


Motif ID: UP00002
Motif name: Sp4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.00743548

Alignment:
BDWAGGCGTGBCHHD
-SWAGCCVDGGCW--

Original motif Reverse complement motif
Consensus sequence: BDWAGGCGTGBCHHD Consensus sequence: HHDGBCACGCCTWDB


Motif ID: UP00028
Motif name: Tcfap2e_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0141542

Alignment:
HHHGCCTSAGGCDAD
-SWAGCCVDGGCW--

Original motif Reverse complement motif
Consensus sequence: HHHGCCTSAGGCDAD Consensus sequence: DTHGCCTSAGGCHHH


Motif ID: UP00087
Motif name: Tcfap2c_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0187577

Alignment:
WHHSCCYSRGGSDAD
--WGCCHVGGCTWS-

Original motif Reverse complement motif
Consensus sequence: WHHSCCYSRGGSDAD Consensus sequence: DTHSCCKSMGGSHHW


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0187696

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-SWAGCCVDGGCW---------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Dataset #: 1 Motif ID: 73 Motif name: C073

Original motif Reverse complement motif
Consensus sequence: YMWGSMYAGCCRKSKCTR Consensus sequence: KAGYSYKGGCTKRSCWYK

Best Matches for Motif ID 73 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0271167

Alignment:
HGDHVHKGACCACCCGGBGBGDB
----YMWGSMYAGCCRKSKCTR-

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 18
Similarity score: 0.0280669

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
-----KAGYSYKGGCTKRSCWYK

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0284377

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
---YMWGSMYAGCCRKSKCTR--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0313979

Alignment:
HDBABCGBKRGYGGCGMSBHAK
--KAGYSYKGGCTKRSCWYK--

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.032852

Alignment:
BBBDVVRGACCACCCAVGABBAB
----YMWGSMYAGCCRKSKCTR-

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB


Dataset #: 1 Motif ID: 74 Motif name: C074

Original motif Reverse complement motif
Consensus sequence: CCAGGCWGGCSKS Consensus sequence: SRSGCCWGCCTGG

Best Matches for Motif ID 74 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 13
Similarity score: 0.0257723

Alignment:
BBBDVVRGACCACCCAVGABBAB
-----SRSGCCWGCCTGG-----

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB


Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 13
Similarity score: 0.0270649

Alignment:
DDRMHBACGCGYGCGTDGBBDB
-----SRSGCCWGCCTGG----

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD


Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0283276

Alignment:
BHBHDTGGCGGGGBDHD
---CCAGGCWGGCSKS-

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD


Motif ID: UP00002
Motif name: Sp4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0313235

Alignment:
HHDGBCACGCCTWDB
-SRSGCCWGCCTGG-

Original motif Reverse complement motif
Consensus sequence: BDWAGGCGTGBCHHD Consensus sequence: HHDGBCACGCCTWDB


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 13
Similarity score: 0.0327573

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
------CCAGGCWGGCSKS----

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Dataset #: 1 Motif ID: 75 Motif name: C075

Original motif Reverse complement motif
Consensus sequence: MGGCAGMSGCAGSCK Consensus sequence: YGSCTGCSYCTGCCY

Best Matches for Motif ID 75 (Highest to Lowest)

Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 15
Similarity score: 0.0343574

Alignment:
BBYVVCAGCTGCBVHHD
--MGGCAGMSGCAGSCK

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB


Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0352972

Alignment:
HBBBCCGCCCCWHHHV
-YGSCTGCSYCTGCCY

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH


Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0363915

Alignment:
HHBVHTGACCTTGVDHD
-YGSCTGCSYCTGCCY-

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD


Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 15
Similarity score: 0.036959

Alignment:
BHHBHCCGCCCCDHHHH
--YGSCTGCSYCTGCCY

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV


Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0381017

Alignment:
DDRMHBACGCGYGCGTDGBBDB
MGGCAGMSGCAGSCK-------

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD


Dataset #: 1 Motif ID: 76 Motif name: C076

Original motif Reverse complement motif
Consensus sequence: ASCTRCCTCYBCSB Consensus sequence: VSGBKGAGGMAGST

Best Matches for Motif ID 76 (Highest to Lowest)

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0266758

Alignment:
BHHHWGGGGCGGBBVH
VSGBKGAGGMAGST--

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH


Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0272671

Alignment:
HHHHDGGGGCGGDBHDV
VSGBKGAGGMAGST---

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV


Motif ID: UP00013
Motif name: Gabpa_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0302132

Alignment:
DBVVDRSGGAWKVHKG
VSGBKGAGGMAGST--

Original motif Reverse complement motif
Consensus sequence: CYDBYWTCCSMHBVVH Consensus sequence: DBVVDRSGGAWKVHKG


Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0328017

Alignment:
BHHDYGGGGGGGGBVD
-VSGBKGAGGMAGST-

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD


Motif ID: UP00022
Motif name: Zfp740_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0330521

Alignment:
HVKDCCGGGGGGWADDD
---VSGBKGAGGMAGST

Original motif Reverse complement motif
Consensus sequence: DDDTWCCCCCCGGDRVH Consensus sequence: HVKDCCGGGGGGWADDD


Dataset #: 1 Motif ID: 77 Motif name: C077

Original motif Reverse complement motif
Consensus sequence: SBCCCCGGSSCCCCCB Consensus sequence: BGGGGGSSCCGGGGBS

Best Matches for Motif ID 77 (Highest to Lowest)

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0480753

Alignment:
BDHHMCGCCCCCTHVBB
SBCCCCGGSSCCCCCB-

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0484396

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-------BGGGGGSSCCGGGGBS

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0490479

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
SBCCCCGGSSCCCCCB------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0535184

Alignment:
HHHHDGGGGCGGDBHDV
-BGGGGGSSCCGGGGBS

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV


Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0543092

Alignment:
VDWDARRGACGCGGWHGGAKHV
SBCCCCGGSSCCCCCB------

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV


Dataset #: 1 Motif ID: 78 Motif name: C078

Original motif Reverse complement motif
Consensus sequence: YRGAYAGAGRGAYR Consensus sequence: KMTCKCTCTMTCKM

Best Matches for Motif ID 78 (Highest to Lowest)

Motif ID: >UP00011
Motif name: Irf6_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0289623

Alignment:
VDDRCCGMGAGTBBB
-KMTCKCTCTMTCKM

Original motif Reverse complement motif
Consensus sequence: VBBACTCYCGGKHDV Consensus sequence: VDDRCCGMGAGTBBB


Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0334841

Alignment:
BHHDTCCCACTCBDBV
--KMTCKCTCTMTCKM

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV


Motif ID: UP00040
Motif name: Irf5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0339287

Alignment:
BHDAHCGAGARTHBV
YRGAYAGAGRGAYR-

Original motif Reverse complement motif
Consensus sequence: BHDAHCGAGARTHBV Consensus sequence: VBHAKTCTCGHTHHV


Motif ID: UP00078
Motif name: Arid3a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0352486

Alignment:
HHVVRTATCRDVDHD
-YRGAYAGAGRGAYR

Original motif Reverse complement motif
Consensus sequence: HHVVRTATCRDVDHD Consensus sequence: DHDBDKGATAMVVDH


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 14
Similarity score: 0.0392148

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-------YRGAYAGAGRGAYR-

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Dataset #: 1 Motif ID: 79 Motif name: C079

Original motif Reverse complement motif
Consensus sequence: ADAAAKWAAAAWAKARW Consensus sequence: WKTRTWTTTTWRTTTDT

Best Matches for Motif ID 79 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0265367

Alignment:
VBDDAAAAAAAAMVBHH
ADAAAKWAAAAWAKARW

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV


Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 17
Similarity score: 0.0319437

Alignment:
WBHHHHHMDATTGTTHDHDVHH
----WKTRTWTTTTWRTTTDT-

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH


Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0359246

Alignment:
DBTHHAAAAAAAAVHDH
ADAAAKWAAAAWAKARW

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH


Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.036697

Alignment:
BDHDDADAGATAAGADHBDHVD
-----ADAAAKWAAAAWAKARW

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0381106

Alignment:
DDAATGTAAACAAAVVB
ADAAAKWAAAAWAKARW

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD


Dataset #: 1 Motif ID: 80 Motif name: C080

Original motif Reverse complement motif
Consensus sequence: WWAAVAAMMHAAWW Consensus sequence: WWTTHRYTTBTTWW

Best Matches for Motif ID 80 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0245388

Alignment:
VBDDAAAAAAAAMVBHH
---WWAAVAAMMHAAWW

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV


Motif ID: UP00170
Motif name: Isl2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0341915

Alignment:
HWDTTAATYKMTTHHR
-WWTTHRYTTBTTWW-

Original motif Reverse complement motif
Consensus sequence: MHHAAYYMATTAADWH Consensus sequence: HWDTTAATYKMTTHHR


Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0349632

Alignment:
DBTHHAAAAAAAAVHDH
---WWAAVAAMMHAAWW

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH


Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0362632

Alignment:
ADDDYAWAACAAMAHH
WWAAVAAMMHAAWW--

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT


Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0380401

Alignment:
HDYAAAHAAMAADHD
WWAAVAAMMHAAWW-

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH


Dataset #: 1 Motif ID: 81 Motif name: C081

Original motif Reverse complement motif
Consensus sequence: BCCSHCCCSCMG Consensus sequence: CYGSGGGHSGGB

Best Matches for Motif ID 81 (Highest to Lowest)

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0133435

Alignment:
DBCCCCCCCCCCMYC
--BCCSHCCCSCMG-

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD


Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0173124

Alignment:
HBBBCCGCCCCWHHHV
---BCCSHCCCSCMG-

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH


Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0193295

Alignment:
BHHBHCCGCCCCDHHHH
----BCCSHCCCSCMG-

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV


Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0214278

Alignment:
HVBCCCCCCCCMHHHB
-BCCSHCCCSCMG---

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 12
Similarity score: 0.0230163

Alignment:
HDBABCGBKRGYGGCGMSBHAK
----CYGSGGGHSGGB------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Dataset #: 1 Motif ID: 82 Motif name: C082

Original motif Reverse complement motif
Consensus sequence: WKAAARAAARAAW Consensus sequence: WTTKTTTMTTTYW

Best Matches for Motif ID 82 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0105695

Alignment:
VBDDAAAAAAAAMVBHH
--WKAAARAAARAAW--

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV


Motif ID: UP00028
Motif name: Tcfap2e_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0217842

Alignment:
DDTTTTTTMBDGDH
-WTTKTTTMTTTYW

Original motif Reverse complement motif
Consensus sequence: HDCDBRAAAAAADD Consensus sequence: DDTTTTTTMBDGDH


Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0234988

Alignment:
HHHTTRTTDTTTKDH
--WTTKTTTMTTTYW

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH


Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.0265681

Alignment:
DDHBTTTTTTTTHDAVH
-WTTKTTTMTTTYW---

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH


Motif ID: UP00097
Motif name: Mtf1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0267248

Alignment:
VDTHTTTHHTATDH
WTTKTTTMTTTYW-

Original motif Reverse complement motif
Consensus sequence: HDATAHDAAAHADV Consensus sequence: VDTHTTTHHTATDH


Dataset #: 1 Motif ID: 83 Motif name: C083

Original motif Reverse complement motif
Consensus sequence: CKBCCTSYRSCTCMMG Consensus sequence: CYRGAGSMKSAGGBRG

Best Matches for Motif ID 83 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 16
Similarity score: 0.0269608

Alignment:
VHYTCCDWCCGCGTCMMTHWHV
--CKBCCTSYRSCTCMMG----

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV


Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0336468

Alignment:
HBBBCCGCCCCWHHHV
CKBCCTSYRSCTCMMG

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 16
Similarity score: 0.0351892

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
-CKBCCTSYRSCTCMMG-----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.035551

Alignment:
HVDVGGGHGGGGDBHB
CYRGAGSMKSAGGBRG

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB


Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.035682

Alignment:
BHHBHCCGCCCCDHHHH
-CKBCCTSYRSCTCMMG

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV


Dataset #: 1 Motif ID: 84 Motif name: C084

Original motif Reverse complement motif
Consensus sequence: SCTGCMKCTGCVB Consensus sequence: VVGCAGYRGCAGS

Best Matches for Motif ID 84 (Highest to Lowest)

Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 13
Similarity score: 0.0229768

Alignment:
HHDVVGCAGCTGVBKVB
---VVGCAGYRGCAGS-

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB


Motif ID: UP00036
Motif name: Myf6_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0256725

Alignment:
VVVRACAGVCBCDCC
SCTGCMKCTGCVB--

Original motif Reverse complement motif
Consensus sequence: VVVRACAGVCBCDCC Consensus sequence: GGDGBGVCTGTKVVB


Motif ID: UP00013
Motif name: Gabpa_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0310274

Alignment:
CYDBYWTCCSMHBVVH
SCTGCMKCTGCVB---

Original motif Reverse complement motif
Consensus sequence: CYDBYWTCCSMHBVVH Consensus sequence: DBVVDRSGGAWKVHKG


Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 13
Similarity score: 0.0325376

Alignment:
BHHBHCCGCCCCDHHHH
----SCTGCMKCTGCVB

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV


Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0348713

Alignment:
BHDCVCAGCAGGHVD
--VVGCAGYRGCAGS

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB


Dataset #: 1 Motif ID: 85 Motif name: C085

Original motif Reverse complement motif
Consensus sequence: VSGRSBHAGARDVSGRS Consensus sequence: SKCSVHMTCTDBSKCSV

Best Matches for Motif ID 85 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 17
Similarity score: 0.0345982

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
----SKCSVHMTCTDBSKCSV-

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0368478

Alignment:
BBYVVCAGCTGCBVHHD
SKCSVHMTCTDBSKCSV

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB


Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0387638

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
------VSGRSBHAGARDVSGRS

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 17
Similarity score: 0.0394694

Alignment:
GTVBDAATTGTVTGHGDDHKVB
---SKCSVHMTCTDBSKCSV--

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00016
Motif name: Sry_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0403194

Alignment:
HHDHDRAACAATDDVHV
VSGRSBHAGARDVSGRS

Original motif Reverse complement motif
Consensus sequence: HHDHDRAACAATDDVHV Consensus sequence: VHVHDATTGTTMHDDDH


Dataset #: 1 Motif ID: 86 Motif name: C086

Original motif Reverse complement motif
Consensus sequence: CSGGAGKCWGMGGSASG Consensus sequence: CSTSCCYCWGRCTCCSG

Best Matches for Motif ID 86 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 17
Similarity score: 0.0432994

Alignment:
VYWVVHCRCCACMCACGAHSBHH
----CSTSCCYCWGRCTCCSG--

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 17
Similarity score: 0.0456174

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-CSGGAGKCWGMGGSASG----

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 17
Similarity score: 0.0460804

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
----CSTSCCYCWGRCTCCSG--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 17
Similarity score: 0.052654

Alignment:
VDWDARRGACGCGGWHGGAKHV
----CSGGAGKCWGMGGSASG-

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 17
Similarity score: 0.0530373

Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
----CSGGAGKCWGMGGSASG--

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Dataset #: 1 Motif ID: 87 Motif name: C087

Original motif Reverse complement motif
Consensus sequence: WRGACCRSSYTGGCYW Consensus sequence: WKGCCAMSSKGGTCKW

Best Matches for Motif ID 87 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 16
Similarity score: 0.0240508

Alignment:
DVTTVVCVYGGHGGYCHHDMYB
--WKGCCAMSSKGGTCKW----

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 16
Similarity score: 0.0273083

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-----WKGCCAMSSKGGTCKW--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0299939

Alignment:
HVGVSAGGAGGGTCYHHHHYVH
------WRGACCRSSYTGGCYW

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH


Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 16
Similarity score: 0.0316295

Alignment:
BBBDVVRGACCACCCAVGABBAB
-----WRGACCRSSYTGGCYW--

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 16
Similarity score: 0.031888

Alignment:
HGDHVHKGACCACCCGGBGBGDB
-----WRGACCRSSYTGGCYW--

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Dataset #: 1 Motif ID: 88 Motif name: C088

Original motif Reverse complement motif
Consensus sequence: SKCACTCWGTAGAMS Consensus sequence: SYTCTACWGAGTGYS

Best Matches for Motif ID 88 (Highest to Lowest)

Motif ID: UP00201
Motif name: Emx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.028571

Alignment:
WVVVCTAATTAGYBGHB
-SYTCTACWGAGTGYS-

Original motif Reverse complement motif
Consensus sequence: WVVVCTAATTAGYBGHB Consensus sequence: BHCBMCTAATTAGBVVW


Motif ID: UP00123
Motif name: Hlxb9
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0306813

Alignment:
BBASTAATTAGTGVHV
SYTCTACWGAGTGYS-

Original motif Reverse complement motif
Consensus sequence: BBASTAATTAGTGVHV Consensus sequence: VDVCACTAATTASTVB


Motif ID: UP00162
Motif name: Evx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0319373

Alignment:
WVHVCTAATTAGYBVDV
-SYTCTACWGAGTGYS-

Original motif Reverse complement motif
Consensus sequence: WVHVCTAATTAGYBVDV Consensus sequence: VDVBMCTAATTAGBHVW


Motif ID: UP00132
Motif name: Evx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0320303

Alignment:
WRBGCTAATTAGCRGBB
-SYTCTACWGAGTGYS-

Original motif Reverse complement motif
Consensus sequence: BVCMGCTAATTAGCBKW Consensus sequence: WRBGCTAATTAGCRGBB


Motif ID: UP00116
Motif name: Rhox6
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0322217

Alignment:
WVHVYTAATTARTBSDH
-SYTCTACWGAGTGYS-

Original motif Reverse complement motif
Consensus sequence: WVHVYTAATTARTBSDH Consensus sequence: DDSBAKTAATTAMVDVW


Dataset #: 1 Motif ID: 89 Motif name: C089

Original motif Reverse complement motif
Consensus sequence: YKCACTMYRDAGRCMR Consensus sequence: MRGKCTDMKYAGTGRK

Best Matches for Motif ID 89 (Highest to Lowest)

Motif ID: UP00132
Motif name: Evx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0412748

Alignment:
WRBGCTAATTAGCRGBB
MRGKCTDMKYAGTGRK-

Original motif Reverse complement motif
Consensus sequence: BVCMGCTAATTAGCBKW Consensus sequence: WRBGCTAATTAGCRGBB


Motif ID: UP00131
Motif name: Gbx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0424502

Alignment:
DVDVKCTAATTAGMVVD
-MRGKCTDMKYAGTGRK

Original motif Reverse complement motif
Consensus sequence: DVVRCTAATTAGYVDBD Consensus sequence: DVDVKCTAATTAGMVVD


Motif ID: UP00201
Motif name: Emx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.0439615

Alignment:
WVVVCTAATTAGYBGHB
MRGKCTDMKYAGTGRK-

Original motif Reverse complement motif
Consensus sequence: WVVVCTAATTAGYBGHB Consensus sequence: BHCBMCTAATTAGBVVW


Motif ID: UP00184
Motif name: Lhx8
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0454659

Alignment:
CAHHGCTAATTAGVVVH
MRGKCTDMKYAGTGRK-

Original motif Reverse complement motif
Consensus sequence: HVVVCTAATTAGCDDTG Consensus sequence: CAHHGCTAATTAGVVVH


Motif ID: UP00084
Motif name: Gmeb1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0461544

Alignment:
DGVBCRACGTYGTYHH
YKCACTMYRDAGRCMR

Original motif Reverse complement motif
Consensus sequence: DGVBCRACGTYGTYHH Consensus sequence: HHMACKACGTMGBVCD


Dataset #: 1 Motif ID: 90 Motif name: C090

Original motif Reverse complement motif
Consensus sequence: WAAWWAAADWWWAW Consensus sequence: WTWWWDTTTWWTTW

Best Matches for Motif ID 90 (Highest to Lowest)

Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0393475

Alignment:
DDHBTTTTTTTTHDAVH
WTWWWDTTTWWTTW---

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH