**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.1 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 1 Number of top significant motifs: 10 Number of best matches: 5 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Phylogenetic tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # CisFinder_DM721_Cluster.txt 153 1 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches in Database for Each Motif (Highest to Lowest) ***************************************************************** Dataset #: 1 Motif ID: 1 Motif name: C001 Consensus sequence (original motif): WWWAAAAAWWAAAAAWAAAAAWWAAAAHWW Consensus sequence (reverse complement motif): WWHTTTTWWTTTTTWTTTTTWWTTTTTWWW ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_primary Original Motif Original Motif Backward 3 23 0.0846473 Species: Mus musculus Consensus sequence (original motif): HADTBVADGATGCATCMTGMVHB Consensus sequence (reverse complement motif): VHVRCAYGATGCATCDTVVADTH Alignment: -------HADTBVADGATGCATCMTGMVHB WWWAAAAAWWAAAAAWAAAAAWWAAAAHWW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Backward 2 22 0.561689 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: --------HHBDHDDAACAATDRHHHHHBW WWWAAAAAWWAAAAAWAAAAAWWAAAAHWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Backward 6 22 0.566383 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: --------HBHDVHDTCTTATCTHTDDHDV WWHTTTTWWTTTTTWTTTTTWWTTTTTWWW----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondaryOriginal Motif Reverse Complement Forward 7 22 0.575767 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH-------- ------WWWAAAAAWWAAAAAWAAAAAWWAAAAHWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryReverse Complement Original Motif Backward 6 22 0.578275 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: --------VVYDDDCHCAVACAATTDBVAC WWHTTTTWWTTTTTWTTTTTWWTTTTTWWW----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: C002 Consensus sequence (original motif): TAYRYACACACACACACRYAYRY Consensus sequence (reverse complement motif): MKKTKKGTGTGTGTGTGTKKKTA ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondaryOriginal Motif Original Motif Backward 1 23 0.0589959 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH TAYRYACACACACACACRYAYRY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondaryOriginal Motif Original Motif Forward 1 23 0.0678722 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT TAYRYACACACACACACRYAYRY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryOriginal Motif Original Motif Backward 1 23 0.0739216 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB TAYRYACACACACACACRYAYRY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primaryOriginal Motif Original Motif Backward 1 23 0.077586 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DTVBDDRGACCACCCAGDWDGBH TAYRYACACACACACACRYAYRY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Backward 2 22 0.55938 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: -HVBDAGCGBGGGTGGCRDBDDDB MKKTKKGTGTGTGTGTGTKKKTA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 3 Motif name: C003 Consensus sequence (original motif): GSCYCHSCCYVCCYCCCCCCSSCCCCCSSC Consensus sequence (reverse complement motif): GSSGGGGGSSGGGGGGKGGVMGGSHGKGSC ************************************************************************ Best Matches for Motif ID 3 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Original Motif Backward 2 23 0.0504417 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: -------VYWVVHCRCCACMCACGAHSBHH GSCYCHSCCYVCCYCCCCCCSSCCCCCSSC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondaryOriginal Motif Original Motif Backward 3 23 0.0508168 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: -------MHHHWHYTMCCHCCCACVAABVH GSCYCHSCCYVCCYCCCCCCSSCCCCCSSC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Forward 2 23 0.0518257 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH------- -GSSGGGGGSSGGGGGGKGGVMGGSHGKGSC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Original Motif Backward 1 23 0.05306 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: -------BADHBDHCGCCCMCGCAHHDBBV GSCYCHSCCYVCCYCCCCCCSSCCCCCSSC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryReverse Complement Reverse Complement Backward 6 23 0.0591633 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: -------BTBVTCVTGGGTGGTCMVVDVBB GSSGGGGGSSGGGGGGKGGVMGGSHGKGSC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 4 Motif name: C004 Consensus sequence (original motif): SSSSSCSSSSSCCSSSSCCSCSSSSSS Consensus sequence (reverse complement motif): SSSSSSGSGGSSSSGGSSSSSGSSSSS ************************************************************************ Best Matches for Motif ID 4 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryReverse Complement Reverse Complement Forward 2 23 0.0378869 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV---- -SSSSSSGSGGSSSSGGSSSSSGSSSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Backward 5 23 0.042097 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: ----HVBDAGCGBGGGTGGCRDBDDDB SSSSSCSSSSSCCSSSSCCSCSSSSSS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Forward 3 23 0.042858 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB---- --SSSSSSGSGGSSSSGGSSSSSGSSSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryReverse Complement Reverse Complement Forward 3 23 0.0467324 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BTBVTCVTGGGTGGTCMVVDVBB---- --SSSSSSGSGGSSSSGGSSSSSGSSSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primaryOriginal Motif Original Motif Backward 4 23 0.0486423 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: ----ABBBBVVRGACCACCCACRDBBM SSSSSCSSSSSCCSSSSCCSCSSSSSS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 5 Motif name: C005 Consensus sequence (original motif): TCTGTAGMCCAGGCTGGCCTYGW Consensus sequence (reverse complement motif): WCKAGGCCAGCCTGGYCTACAGA ************************************************************************ Best Matches for Motif ID 5 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Backward 1 23 0.0620662 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB TCTGTAGMCCAGGCTGGCCTYGW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primaryOriginal Motif Original Motif Backward 2 22 0.553936 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: -DTVBDDRGACCACCCAGDWDGBH TCTGTAGMCCAGGCTGGCCTYGW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryOriginal Motif Original Motif Backward 2 22 0.556669 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: -BBBDVVRGACCACCCAVGABBAB TCTGTAGMCCAGGCTGGCCTYGW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryReverse Complement Original Motif Forward 2 22 0.55849 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB- -WCKAGGCCAGCCTGGYCTACAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondaryReverse Complement Reverse Complement Forward 1 22 0.56544 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR- WCKAGGCCAGCCTGGYCTACAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 6 Motif name: C006 Consensus sequence (original motif): SWCACACASWCACACWSW Consensus sequence (reverse complement motif): WSWGTGTGWSTGTGTGWS ************************************************************************ Best Matches for Motif ID 6 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryOriginal Motif Reverse Complement Backward 3 18 0.0361661 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC --SWCACACASWCACACWSW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Original Motif Backward 3 18 0.0406554 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV ---SWCACACASWCACACWSW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Original Motif Forward 2 18 0.040868 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -SWCACACASWCACACWSW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Forward 1 18 0.0421858 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB WSWGTGTGWSTGTGTGWS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryOriginal Motif Original Motif Forward 4 18 0.0427432 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: VCTBHBVCTTGGWTACVVVVVDB ---SWCACACASWCACACWSW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 7 Motif name: C007 Consensus sequence (original motif): KTTSTGAGTTCVAGGMCAGCCTS Consensus sequence (reverse complement motif): SAGGCTGYCCTVGAACTCASAAY ************************************************************************ Best Matches for Motif ID 7 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryReverse Complement Reverse Complement Forward 2 22 0.0642913 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC- -SAGGCTGYCCTVGAACTCASAAY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryOriginal Motif Reverse Complement Backward 2 22 0.0664801 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: -VCTBHBVCTTGGWTACVVVVVDB KTTSTGAGTTCVAGGMCAGCCTS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Reverse Complement Original Motif Backward 2 22 0.0672967 Species: Mus musculus Consensus sequence (original motif): HDTBHHCCHTAGCAACVVDHHHH Consensus sequence (reverse complement motif): HHHHDVVGTTGCTAHGGDHBAHH Alignment: -HDTBHHCCHTAGCAACVVDHHHH SAGGCTGYCCTVGAACTCASAAY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondaryOriginal Motif Reverse Complement Backward 2 22 0.0707277 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: -DVVTTVGTGGGHGGYAMHWHHHY KTTSTGAGTTCVAGGMCAGCCTS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondaryReverse Complement Original Motif Forward 3 21 0.562337 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH-- --SAGGCTGYCCTVGAACTCASAAY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 8 Motif name: C008 Consensus sequence (original motif): SSCCSSCCCCSSCCSS Consensus sequence (reverse complement motif): SSGGSSGGGGSSGGSS ************************************************************************ Best Matches for Motif ID 8 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primaryOriginal Motif Original Motif Backward 1 16 0.0353177 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB SSCCSSCCCCSSCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Forward 3 16 0.0353208 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH --SSCCSSCCCCSSCCSS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryReverse Complement Reverse Complement Forward 8 16 0.0416492 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV -------SSGGSSGGGGSSGGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondaryReverse Complement Reverse Complement Backward 8 16 0.0427346 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: DVVTTVGTGGGHGGYAMHWHHHY SSGGSSGGGGSSGGSS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Forward 2 16 0.0428588 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB -SSGGSSGGGGSSGGSS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 9 Motif name: C009 Consensus sequence (original motif): ABGCCTTTAATCCCAGCACTHR Consensus sequence (reverse complement motif): MHAGTGCTGGGATTAAAGGCBT ************************************************************************ Best Matches for Motif ID 9 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondaryReverse Complement Reverse Complement Forward 1 22 0.0664875 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: DVVTTVGTGGGHGGYAMHWHHHY MHAGTGCTGGGATTAAAGGCBT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondaryOriginal Motif Original Motif Forward 2 21 0.56321 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH- -ABGCCTTTAATCCCAGCACTHR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Original Motif Backward 3 21 0.565627 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: -BADHBDHCGCCCMCGCAHHDBBV ABGCCTTTAATCCCAGCACTHR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondaryOriginal Motif Reverse Complement Forward 2 21 0.56702 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH- -ABGCCTTTAATCCCAGCACTHR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryReverse Complement Reverse Complement Backward 4 20 1.06431 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: --BDBBVBVGTAWCCAAGVBHBAGB MHAGTGCTGGGATTAAAGGCBT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 10 Motif name: C010 Consensus sequence (original motif): WWWAAAAWWAAAAAAAAAAWW Consensus sequence (reverse complement motif): WWTTTTTTTTTTWWTTTTWWW ************************************************************************ Best Matches for Motif ID 10 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Backward 2 21 0.0528064 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV WWTTTTTTTTTTWWTTTTWWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Backward 1 21 0.0586273 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW -WWWAAAAWWAAAAAAAAAAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondaryOriginal Motif Reverse Complement Backward 1 21 0.0606713 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HHHBBMGATAVHATCWVVDHVH -WWWAAAAWWAAAAAAAAAAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryOriginal Motif Reverse Complement Forward 1 21 0.0617422 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC WWWAAAAWWAAAAAAAAAAWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Original Motif Original Motif Forward 1 21 0.065491 Species: Mus musculus Consensus sequence (original motif): HDTBHHCCHTAGCAACVVDHHHH Consensus sequence (reverse complement motif): HHHHDVVGTTGCTAHGGDHBAHH Alignment: HDTBHHCCHTAGCAACVVDHHHH WWWAAAAWWAAAAAAAAAAWW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 11 Motif name: C011 Consensus sequence (original motif): KMGAGAKMGAGAGAGAKM Consensus sequence (reverse complement motif): RRTCTCTCTCRRTCTCRR ************************************************************************ Best Matches for Motif ID 11 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryReverse Complement Reverse Complement Backward 2 18 0.0404807 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC ---RRTCTCTCTCRRTCTCRR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Reverse Complement Backward 2 18 0.0471227 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH ----RRTCTCTCTCRRTCTCRR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryReverse Complement Original Motif Forward 1 18 0.0474739 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB RRTCTCTCTCRRTCTCRR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Reverse Complement Forward 3 18 0.0475854 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK --KMGAGAKMGAGAGAGAKM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Reverse Complement Forward 4 18 0.0500023 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV ---KMGAGAKMGAGAGAGAKM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 12 Motif name: C012 Consensus sequence (original motif): MKAGAGMKAGAGAGAGAKM Consensus sequence (reverse complement motif): YRTCTCTCTCTRYCTCTRR ************************************************************************ Best Matches for Motif ID 12 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Reverse Complement Forward 2 19 0.0419739 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK -MKAGAGMKAGAGAGAGAKM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Backward 4 19 0.0446412 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV YRTCTCTCTCTRYCTCTRR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Original Motif Backward 3 19 0.0455704 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB --MKAGAGMKAGAGAGAGAKM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Reverse Complement Backward 3 19 0.0502954 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB --MKAGAGMKAGAGAGAGAKM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Reverse Complement Forward 3 19 0.0510365 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV --MKAGAGMKAGAGAGAGAKM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 13 Motif name: C013 Consensus sequence (original motif): WVCTGGAACTCACTHTGTAGACCAGGM Consensus sequence (reverse complement motif): YCCTGGTCTACADAGTGAGTTCCAGVW ************************************************************************ Best Matches for Motif ID 13 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondaryOriginal Motif Reverse Complement Backward 6 22 0.0456555 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: -----MWSMBAARRATGCDCABHATGD WVCTGGAACTCACTHTGTAGACCAGGM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryReverse Complement Original Motif Forward 6 22 0.0503111 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC----- -----YCCTGGTCTACADAGTGAGTTCCAGVW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Original Motif Original Motif Backward 6 22 0.0518427 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: -----WHVBVVMACGCGCGTCDYHWDH WVCTGGAACTCACTHTGTAGACCAGGM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryOriginal Motif Reverse Complement Backward 7 21 0.546981 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: ------BHCBCBCCGGGTGGTCYHVHDCH WVCTGGAACTCACTHTGTAGACCAGGM------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryReverse Complement Reverse Complement Backward 3 21 0.549369 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: ------BTBVTCVTGGGTGGTCMVVDVBB YCCTGGTCTACADAGTGAGTTCCAGVW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 14 Motif name: C014 Consensus sequence (original motif): YSGGAGGCAGAGGCMS Consensus sequence (reverse complement motif): SYGCCTCTGCCTCCSK ************************************************************************ Best Matches for Motif ID 14 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondaryReverse Complement Reverse Complement Forward 3 16 0.0331356 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV --SYGCCTCTGCCTCCSK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_secondaryReverse Complement Reverse Complement Forward 1 16 0.034812 Species: Mus musculus Consensus sequence (original motif): VBVDAGGTGTYGVBBV Consensus sequence (reverse complement motif): VVBVCKACACCTHVBV Alignment: VVBVCKACACCTHVBV SYGCCTCTGCCTCCSK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondaryOriginal Motif Original Motif Backward 7 16 0.034835 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH YSGGAGGCAGAGGCMS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Original Motif Forward 2 16 0.034915 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB -SYGCCTCTGCCTCCSK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Reverse Complement Original Motif Backward 1 16 0.0350751 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: BBBAVTGCAGTGBBVDD -SYGCCTCTGCCTCCSK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 15 Motif name: C015 Consensus sequence (original motif): DVAGCCWKGGCTACAVAGCK Consensus sequence (reverse complement motif): RGCTVTGTAGCCYWGGCTVD ************************************************************************ Best Matches for Motif ID 15 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryOriginal Motif Original Motif Backward 2 20 0.0486537 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: VCTBHBVCTTGGWTACVVVVVDB --DVAGCCWKGGCTACAVAGCK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Original Motif Original Motif Forward 3 20 0.0536153 Species: Mus musculus Consensus sequence (original motif): HDTBHHCCHTAGCAACVVDHHHH Consensus sequence (reverse complement motif): HHHHDVVGTTGCTAHGGDHBAHH Alignment: HDTBHHCCHTAGCAACVVDHHHH --DVAGCCWKGGCTACAVAGCK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Reverse Complement Forward 2 20 0.0624325 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH -RGCTVTGTAGCCYWGGCTVD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primaryReverse Complement Reverse Complement Forward 3 20 0.0635845 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH --RGCTVTGTAGCCYWGGCTVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primaryReverse Complement Reverse Complement Forward 3 20 0.0640763 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: CVHBSCGGGTGGTCMHVHHCDH --RGCTVTGTAGCCYWGGCTVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 16 Motif name: C016 Consensus sequence (original motif): HWAAWAAAHWAAMAWAMAAWW Consensus sequence (reverse complement motif): WWTTYTWTYTTWDTTTWTTWH ************************************************************************ Best Matches for Motif ID 16 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Backward 1 21 0.0445695 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW -HWAAWAAAHWAAMAWAMAAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Forward 1 21 0.0472803 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV WWTTYTWTYTTWDTTTWTTWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondaryOriginal Motif Reverse Complement Backward 1 21 0.0518988 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH -HWAAWAAAHWAAMAWAMAAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryOriginal Motif Reverse Complement Backward 2 21 0.0523549 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC HWAAWAAAHWAAMAWAMAAWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Original Motif Forward 2 21 0.0599775 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -HWAAWAAAHWAAMAWAMAAWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 17 Motif name: C017 Consensus sequence (original motif): WSWGAGASWSAGAGASWS Consensus sequence (reverse complement motif): SWSTCTCTSWSTCTCWSW ************************************************************************ Best Matches for Motif ID 17 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondaryOriginal Motif Original Motif Backward 3 18 0.0370092 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV --WSWGAGASWSAGAGASWS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryReverse Complement Reverse Complement Backward 3 18 0.0399153 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC --SWSTCTCTSWSTCTCWSW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Original Motif Backward 6 18 0.0422644 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB WSWGAGASWSAGAGASWS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Reverse Complement Forward 5 18 0.0425861 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV ----WSWGAGASWSAGAGASWS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryOriginal Motif Reverse Complement Backward 4 18 0.0439386 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB --WSWGAGASWSAGAGASWS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 18 Motif name: C018 Consensus sequence (original motif): AAMYAAAAAAAHA Consensus sequence (reverse complement motif): THTTTTTTTMYTT ************************************************************************ Best Matches for Motif ID 18 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00028 Tcfap2e_secondaryOriginal Motif Original Motif Backward 1 13 0.0145388 Species: Mus musculus Consensus sequence (original motif): HDCDBRAAAAAADD Consensus sequence (reverse complement motif): DDTTTTTTMBDGDH Alignment: HDCDBRAAAAAADD -AAMYAAAAAAAHA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Backward 1 13 0.0166921 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH ----AAMYAAAAAAAHA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondaryOriginal Motif Original Motif Backward 3 13 0.0192633 Species: Mus musculus Consensus sequence (original motif): ADDDYAWAACAAMAHH Consensus sequence (reverse complement motif): HDTYTTGTTWTKDDDT Alignment: ADDDYAWAACAAMAHH -AAMYAAAAAAAHA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Original Motif Original Motif Forward 2 13 0.0204511 Species: Mus musculus Consensus sequence (original motif): VRHCCAATAAAAWHHV Consensus sequence (reverse complement motif): VDHWTTTTATTGGDKB Alignment: VRHCCAATAAAAWHHV -AAMYAAAAAAAHA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00041 Foxj1_primary Original Motif Original Motif Forward 2 13 0.0217367 Species: Mus musculus Consensus sequence (original motif): HDHRTAAACAAAHDDD Consensus sequence (reverse complement motif): DDDHTTTGTTTAMHDH Alignment: HDHRTAAACAAAHDDD -AAMYAAAAAAAHA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 19 Motif name: C019 Consensus sequence (original motif): MWYCCCAGCACTTGGGAGGCAG Consensus sequence (reverse complement motif): CTGCCTCCCAAGTGCTGGGMWR ************************************************************************ Best Matches for Motif ID 19 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondaryOriginal Motif Original Motif Forward 1 22 0.041956 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT MWYCCCAGCACTTGGGAGGCAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryReverse Complement Reverse Complement Forward 1 22 0.0441925 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV CTGCCTCCCAAGTGCTGGGMWR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Reverse Complement Forward 1 22 0.0552063 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH MWYCCCAGCACTTGGGAGGCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primaryOriginal Motif Original Motif Forward 1 22 0.0596824 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: HTBVVVDGGACCACCCRGRDBG MWYCCCAGCACTTGGGAGGCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primaryReverse Complement Reverse Complement Forward 1 22 0.0599404 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM CTGCCTCCCAAGTGCTGGGMWR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 20 Motif name: C020 Consensus sequence (original motif): BSCVCCSCCVCSCCCACS Consensus sequence (reverse complement motif): SGTGGGSGVGGSGGVGSB ************************************************************************ Best Matches for Motif ID 20 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Reverse Complement Forward 1 18 0.0350167 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK SGTGGGSGVGGSGGVGSB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Backward 5 18 0.0412841 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB -SGTGGGSGVGGSGGVGSB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Original Motif Forward 3 18 0.0415056 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV --BSCVCCSCCVCSCCCACS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Original Motif Backward 5 18 0.0438926 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -BSCVCCSCCVCSCCCACS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondaryOriginal Motif Original Motif Backward 6 18 0.0475246 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH BSCVCCSCCVCSCCCACS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 21 Motif name: C021 Consensus sequence (original motif): MKAGMVAGAKAGMK Consensus sequence (reverse complement motif): RYCTRTCTVYCTRY ************************************************************************ Best Matches for Motif ID 21 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondaryReverse Complement Reverse Complement Backward 1 14 0.0269394 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: HDTMCTTTGTSTVDBB --RYCTRTCTVYCTRY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score >UP00011 Irf6_secondaryOriginal Motif Reverse Complement Backward 1 14 0.0331495 Species: Mus musculus Consensus sequence (original motif): VBBACTCYCGGKHDV Consensus sequence (reverse complement motif): VDDRCCGMGAGTBBB Alignment: VBBACTCYCGGKHDV -MKAGMVAGAKAGMK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00040 Irf5_secondaryOriginal Motif Original Motif Forward 2 14 0.0341976 Species: Mus musculus Consensus sequence (original motif): BHDAHCGAGARTHBV Consensus sequence (reverse complement motif): VBHAKTCTCGHTHHV Alignment: BHDAHCGAGARTHBV -MKAGMVAGAKAGMK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondaryOriginal Motif Original Motif Forward 1 14 0.0359613 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: HVDDVCAGATGKYHBBV MKAGMVAGAKAGMK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Reverse Complement Reverse Complement Forward 3 14 0.0368158 Species: Mus musculus Consensus sequence (original motif): DVMVGCACACACKCVH Consensus sequence (reverse complement motif): HBGYGTGTGTGCVRVD Alignment: HBGYGTGTGTGCVRVD --RYCTRTCTVYCTRY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 22 Motif name: C022 Consensus sequence (original motif): BGCCYCBGSCYCCCSVS Consensus sequence (reverse complement motif): SVSGGGKGSCBGMGGCV ************************************************************************ Best Matches for Motif ID 22 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Backward 6 17 0.0352062 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH BGCCYCBGSCYCCCSVS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondaryOriginal Motif Original Motif Backward 1 17 0.0384374 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH BGCCYCBGSCYCCCSVS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Forward 7 17 0.0394824 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB ------SVSGGGKGSCBGMGGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Original Motif Forward 1 17 0.0470502 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB BGCCYCBGSCYCCCSVS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryReverse Complement Reverse Complement Forward 7 17 0.0477827 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV ------SVSGGGKGSCBGMGGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 23 Motif name: C023 Consensus sequence (original motif): SSCCSCBHCSCCSS Consensus sequence (reverse complement motif): SSGGSGDBGSGGSS ************************************************************************ Best Matches for Motif ID 23 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Forward 4 14 0.0233667 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ---SSCCSCBHCSCCSS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondaryReverse Complement Reverse Complement Forward 1 14 0.0308308 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: HVDVGGGHGGGGDBHB SSGGSGDBGSGGSS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_secondaryReverse Complement Reverse Complement Forward 3 14 0.0321962 Species: Mus musculus Consensus sequence (original motif): CYDBYWTCCSMHBVVH Consensus sequence (reverse complement motif): DBVVDRSGGAWKVHKG Alignment: DBVVDRSGGAWKVHKG --SSGGSGDBGSGGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primaryReverse Complement Reverse Complement Backward 1 14 0.0322741 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD -SSGGSGDBGSGGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Backward 3 14 0.0324541 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH -------SSCCSCBHCSCCSS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 24 Motif name: C024 Consensus sequence (original motif): TDAAYRWAAAAWYDAAHA Consensus sequence (reverse complement motif): THTTDMWTTTTWKMTTDA ************************************************************************ Best Matches for Motif ID 24 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Reverse Complement Backward 3 18 0.0410905 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH --THTTDMWTTTTWKMTTDA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryOriginal Motif Reverse Complement Forward 5 18 0.0441479 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC ----TDAAYRWAAAAWYDAAHA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Forward 1 18 0.0508186 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV THTTDMWTTTTWKMTTDA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondaryOriginal Motif Reverse Complement Forward 3 18 0.0546986 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HHHBBMGATAVHATCWVVDHVH --TDAAYRWAAAAWYDAAHA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondaryOriginal Motif Original Motif Forward 1 18 0.0553 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: MWSMBAARRATGCDCABHATGD TDAAYRWAAAAWYDAAHA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 25 Motif name: C025 Consensus sequence (original motif): KMGAKAGAGMGAKM Consensus sequence (reverse complement motif): RRTCRCTCTRTCRR ************************************************************************ Best Matches for Motif ID 25 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00080 Gata5_secondaryReverse Complement Original Motif Backward 4 14 0.036512 Species: Mus musculus Consensus sequence (original motif): VVBHRAGATATCWDHBB Consensus sequence (reverse complement motif): VVHHWGATATCTMHBBV Alignment: VVBHRAGATATCWDHBB RRTCRCTCTRTCRR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryReverse Complement Reverse Complement Backward 4 14 0.0377627 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC -----RRTCRCTCTRTCRR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryOriginal Motif Original Motif Forward 10 14 0.0384238 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: VCTBHBVCTTGGWTACVVVVVDB ---------KMGAKAGAGMGAKM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00100 Gata6_secondaryReverse Complement Reverse Complement Backward 4 14 0.0394703 Species: Mus musculus Consensus sequence (original motif): GBBVCGATATCGSVGYD Consensus sequence (reverse complement motif): HKCBSCGATATCGVBBC Alignment: HKCBSCGATATCGVBBC RRTCRCTCTRTCRR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00040 Irf5_secondaryOriginal Motif Original Motif Forward 1 14 0.0405383 Species: Mus musculus Consensus sequence (original motif): BHDAHCGAGARTHBV Consensus sequence (reverse complement motif): VBHAKTCTCGHTHHV Alignment: BHDAHCGAGARTHBV KMGAKAGAGMGAKM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 26 Motif name: C026 Consensus sequence (original motif): KMGAGAKMKMGAGAKM Consensus sequence (reverse complement motif): RRTCTCRRRRTCTCRR ************************************************************************ Best Matches for Motif ID 26 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00095 Zfp691_secondaryReverse Complement Reverse Complement Forward 1 16 0.0454643 Species: Mus musculus Consensus sequence (original motif): DABBWGACTCCTHDVHV Consensus sequence (reverse complement motif): VHBDDAGGAGTCWBBTD Alignment: VHBDDAGGAGTCWBBTD RRTCTCRRRRTCTCRR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_secondaryOriginal Motif Reverse Complement Backward 2 16 0.0459821 Species: Mus musculus Consensus sequence (original motif): DYGVKTCAATAABTYDD Consensus sequence (reverse complement motif): HDMAVTTATTGARVCMH Alignment: HDMAVTTATTGARVCMH KMGAGAKMKMGAGAKM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryReverse Complement Reverse Complement Forward 7 16 0.0470026 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB ------RRTCTCRRRRTCTCRR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00100 Gata6_secondaryReverse Complement Reverse Complement Forward 1 16 0.0472484 Species: Mus musculus Consensus sequence (original motif): GBBVCGATATCGSVGYD Consensus sequence (reverse complement motif): HKCBSCGATATCGVBBC Alignment: HKCBSCGATATCGVBBC RRTCTCRRRRTCTCRR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00080 Gata5_secondaryOriginal Motif Reverse Complement Forward 2 16 0.0489582 Species: Mus musculus Consensus sequence (original motif): VVBHRAGATATCWDHBB Consensus sequence (reverse complement motif): VVHHWGATATCTMHBBV Alignment: VVHHWGATATCTMHBBV -KMGAGAKMKMGAGAKM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 27 Motif name: C027 Consensus sequence (original motif): MRCAGRGAAACCCTGTCTYDW Consensus sequence (reverse complement motif): WHKAGACAGGGTTTCMCTGKY ************************************************************************ Best Matches for Motif ID 27 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Forward 2 21 0.0379369 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB -WHKAGACAGGGTTTCMCTGKY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryOriginal Motif Reverse Complement Forward 3 21 0.0428251 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB --MRCAGRGAAACCCTGTCTYDW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryReverse Complement Original Motif Backward 2 21 0.0432221 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: VCTBHBVCTTGGWTACVVVVVDB -WHKAGACAGGGTTTCMCTGKY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondaryOriginal Motif Reverse Complement Forward 1 21 0.0454185 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH MRCAGRGAAACCCTGTCTYDW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondaryReverse Complement Original Motif Forward 2 21 0.0491194 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH -WHKAGACAGGGTTTCMCTGKY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 28 Motif name: C028 Consensus sequence (original motif): BVGASSCASAGVSABV Consensus sequence (reverse complement motif): VBTSVCTSTGSSTCVB ************************************************************************ Best Matches for Motif ID 28 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Original Motif Original Motif Backward 2 16 0.0351716 Species: Mus musculus Consensus sequence (original motif): HDHDDCCAGACABBHVH Consensus sequence (reverse complement motif): HVHBVTGTCTGGDDHDD Alignment: HDHDDCCAGACABBHVH BVGASSCASAGVSABV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Backward 4 16 0.0393573 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ---BVGASSCASAGVSABV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_secondaryReverse Complement Original Motif Backward 1 16 0.0397911 Species: Mus musculus Consensus sequence (original motif): CYDBYWTCCSMHBVVH Consensus sequence (reverse complement motif): DBVVDRSGGAWKVHKG Alignment: CYDBYWTCCSMHBVVH VBTSVCTSTGSSTCVB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00011 Irf6_primary Reverse Complement Reverse Complement Forward 2 16 0.0399886 Species: Mus musculus Consensus sequence (original motif): HDDAHCGAAACYAVDDD Consensus sequence (reverse complement motif): DHDBTKGTTTCGHTHDD Alignment: DHDBTKGTTTCGHTHDD -VBTSVCTSTGSSTCVB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryReverse Complement Original Motif Backward 5 16 0.0408182 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB --VBTSVCTSTGSSTCVB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 29 Motif name: C029 Consensus sequence (original motif): AAWWWAAAAWWWAA Consensus sequence (reverse complement motif): TTWWWTTTTWWWTT ************************************************************************ Best Matches for Motif ID 29 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Reverse Complement Backward 4 14 0.0387466 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB TTWWWTTTTWWWTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondaryReverse Complement Reverse Complement Backward 4 14 0.0414949 Species: Mus musculus Consensus sequence (original motif): DBTHHAAAAAAAAVHDH Consensus sequence (reverse complement motif): DDHBTTTTTTTTHDAVH Alignment: DDHBTTTTTTTTHDAVH TTWWWTTTTWWWTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Backward 1 14 0.0415039 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH ---AAWWWAAAAWWWAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondaryOriginal Motif Original Motif Backward 3 14 0.0434847 Species: Mus musculus Consensus sequence (original motif): ADDDYAWAACAAMAHH Consensus sequence (reverse complement motif): HDTYTTGTTWTKDDDT Alignment: ADDDYAWAACAAMAHH AAWWWAAAAWWWAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Original Motif Original Motif Forward 2 14 0.045306 Species: Mus musculus Consensus sequence (original motif): HARTHAATTAWTAVDHD Consensus sequence (reverse complement motif): DHDBTAWTAATTHAKTH Alignment: HARTHAATTAWTAVDHD -AAWWWAAAAWWWAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 30 Motif name: C030 Consensus sequence (original motif): WYAAAAAMAAAAAAAAWAM Consensus sequence (reverse complement motif): YTWTTTTTTTTYTTTTTMW ************************************************************************ Best Matches for Motif ID 30 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Backward 2 19 0.0369294 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW --WYAAAAAMAAAAAAAAWAM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryReverse Complement Original Motif Forward 4 19 0.0399523 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB ---YTWTTTTTTTTYTTTTTMW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Forward 3 19 0.0431733 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV --YTWTTTTTTTTYTTTTTMW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondaryOriginal Motif Reverse Complement Backward 1 19 0.0503657 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HHHBBMGATAVHATCWVVDHVH ---WYAAAAAMAAAAAAAAWAM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Original Motif Forward 3 19 0.0507131 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH --WYAAAAAMAAAAAAAAWAM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 31 Motif name: C031 Consensus sequence (original motif): WHAAAMRWWYAAAMAWW Consensus sequence (reverse complement motif): WWTYTTTMWWKYTTTHW ************************************************************************ Best Matches for Motif ID 31 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Forward 1 17 0.0458825 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH WHAAAMRWWYAAAMAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondaryReverse Complement Reverse Complement Forward 1 17 0.0488194 Species: Mus musculus Consensus sequence (original motif): DBTHHAAAAAAAAVHDH Consensus sequence (reverse complement motif): DDHBTTTTTTTTHDAVH Alignment: DDHBTTTTTTTTHDAVH WWTYTTTMWWKYTTTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Reverse Complement Backward 6 17 0.0501404 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH WWTYTTTMWWKYTTTHW----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Reverse Complement Reverse Complement Forward 1 17 0.0539477 Species: Mus musculus Consensus sequence (original motif): HARTHAATTAWTAVDHD Consensus sequence (reverse complement motif): DHDBTAWTAATTHAKTH Alignment: DHDBTAWTAATTHAKTH WWTYTTTMWWKYTTTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00078 Arid3a_primaryReverse Complement Reverse Complement Forward 1 17 0.0545289 Species: Mus musculus Consensus sequence (original motif): VBBHTTAATTAAAMHHH Consensus sequence (reverse complement motif): DHHYTTTAATTAAHBBV Alignment: DHHYTTTAATTAAHBBV WWTYTTTMWWKYTTTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 32 Motif name: C032 Consensus sequence (original motif): HWAAWYDAAAMWRWAMWR Consensus sequence (reverse complement motif): KWYTWKWYTTTDMWTTWH ************************************************************************ Best Matches for Motif ID 32 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Reverse Complement Forward 4 18 0.0461423 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH ---KWYTWKWYTTTDMWTTWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryOriginal Motif Original Motif Backward 2 18 0.050828 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB ---HWAAWYDAAAMWRWAMWR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Forward 2 18 0.0516978 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV -KWYTWKWYTTTDMWTTWH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondaryOriginal Motif Reverse Complement Backward 1 18 0.0517018 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH ----HWAAWYDAAAMWRWAMWR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondaryOriginal Motif Reverse Complement Backward 4 18 0.0667428 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM --HWAAWYDAAAMWRWAMWR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 33 Motif name: C033 Consensus sequence (original motif): WWAAWYAAAMRWAAAW Consensus sequence (reverse complement motif): WTTTWKYTTTMWTTWW ************************************************************************ Best Matches for Motif ID 33 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Reverse Complement Reverse Complement Backward 1 16 0.0226221 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: VVVWTTGTTTAMATTWD -WTTTWKYTTTMWTTWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Reverse Complement Reverse Complement Forward 2 16 0.0262386 Species: Mus musculus Consensus sequence (original motif): HHWAWGTAAAYAAAVDB Consensus sequence (reverse complement motif): BDVTTTKTTTACWTWHH Alignment: BDVTTTKTTTACWTWHH -WTTTWKYTTTMWTTWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Reverse Complement Reverse Complement Forward 2 16 0.0287316 Species: Mus musculus Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: BBVTTTGTTTACATTDD -WTTTWKYTTTMWTTWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondaryOriginal Motif Original Motif Backward 1 16 0.0296838 Species: Mus musculus Consensus sequence (original motif): ADDDYAWAACAAMAHH Consensus sequence (reverse complement motif): HDTYTTGTTWTKDDDT Alignment: ADDDYAWAACAAMAHH WWAAWYAAAMRWAAAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Backward 1 16 0.0300495 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH -WWAAWYAAAMRWAAAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 34 Motif name: C034 Consensus sequence (original motif): SCACTGSGGAGSMAGAGS Consensus sequence (reverse complement motif): SCTCTRSCTCCSCAGTGS ************************************************************************ Best Matches for Motif ID 34 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Original Motif Backward 3 18 0.0434619 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB ---SCACTGSGGAGSMAGAGS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Original Motif Backward 3 18 0.0468771 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH --SCTCTRSCTCCSCAGTGS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Original Motif Backward 3 18 0.0486672 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV ---SCTCTRSCTCCSCAGTGS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryReverse Complement Original Motif Backward 4 18 0.0500626 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH --SCTCTRSCTCCSCAGTGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryReverse Complement Original Motif Backward 1 18 0.0522233 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: VCTBHBVCTTGGWTACVVVVVDB -----SCTCTRSCTCCSCAGTGS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 35 Motif name: C035 Consensus sequence (original motif): WWACCYKGTCTMRAAAWW Consensus sequence (reverse complement motif): WWTTTMYAGACRKGGTWW ************************************************************************ Best Matches for Motif ID 35 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Original Motif Reverse Complement Forward 5 18 0.0424694 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV ----WWACCYKGTCTMRAAAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Reverse Complement Forward 4 18 0.0529352 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH ---WWTTTMYAGACRKGGTWW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondaryReverse Complement Original Motif Backward 6 18 0.0530184 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT WWTTTMYAGACRKGGTWW----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryOriginal Motif Reverse Complement Forward 1 18 0.0572016 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: VCTBHBVCTTGGWTACVVVVVDB WWACCYKGTCTMRAAAWW----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Backward 2 18 0.0574877 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ----WWTTTMYAGACRKGGTWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 36 Motif name: C036 Consensus sequence (original motif): MKAGMKMGAGAKMKAGMK Consensus sequence (reverse complement motif): RRCTRRRTCTCRRRCTRY ************************************************************************ Best Matches for Motif ID 36 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Reverse Complement Backward 1 18 0.0426031 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK ----RRCTRRRTCTCRRRCTRY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryReverse Complement Original Motif Forward 5 18 0.0454827 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB ----RRCTRRRTCTCRRRCTRY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Original Motif Forward 1 18 0.0473662 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: WHVBVVMACGCGCGTCDYHWDH RRCTRRRTCTCRRRCTRY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Original Motif Forward 3 18 0.0480971 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB --MKAGMKMGAGAKMKAGMK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondaryReverse Complement Original Motif Backward 4 18 0.0493902 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV -RRCTRRRTCTCRRRCTRY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 37 Motif name: C037 Consensus sequence (original motif): SVCCGBCMCCSYCMCCVB Consensus sequence (reverse complement motif): BVGGYGKSGGYGBCGGVS ************************************************************************ Best Matches for Motif ID 37 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Reverse Complement Forward 2 18 0.0265916 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK -BVGGYGKSGGYGBCGGVS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Forward 3 18 0.0363116 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB --BVGGYGKSGGYGBCGGVS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Original Motif Backward 3 18 0.0376504 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH ---SVCCGBCMCCSYCMCCVB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Forward 5 18 0.0409627 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ----BVGGYGKSGGYGBCGGVS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondaryReverse Complement Original Motif Backward 1 18 0.0454859 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH ----BVGGYGKSGGYGBCGGVS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 38 Motif name: C038 Consensus sequence (original motif): RRRATCCDSCTGCCTYT Consensus sequence (reverse complement motif): AKAGGCAGSDGGATKKK ************************************************************************ Best Matches for Motif ID 38 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_primary Reverse Complement Reverse Complement Backward 1 17 0.0332889 Species: Mus musculus Consensus sequence (original motif): HADTBVADGATGCATCMTGMVHB Consensus sequence (reverse complement motif): VHVRCAYGATGCATCDTVVADTH Alignment: VHVRCAYGATGCATCDTVVADTH ------AKAGGCAGSDGGATKKK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_secondaryReverse Complement Reverse Complement Forward 1 17 0.0415981 Species: Mus musculus Consensus sequence (original motif): DDDTWCCCCCCGGDRVH Consensus sequence (reverse complement motif): HVKDCCGGGGGGWADDD Alignment: HVKDCCGGGGGGWADDD AKAGGCAGSDGGATKKK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondaryReverse Complement Original Motif Forward 1 17 0.0467833 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: HVDDVCAGATGKYHBBV AKAGGCAGSDGGATKKK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondaryOriginal Motif Reverse Complement Forward 4 17 0.0476081 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM ---RRRATCCDSCTGCCTYT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondaryOriginal Motif Original Motif Forward 2 17 0.0482666 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB -RRRATCCDSCTGCCTYT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 39 Motif name: C039 Consensus sequence (original motif): SMAGRSCAGSSYGGBS Consensus sequence (reverse complement motif): SBCCKSSCTGSMCTRS ************************************************************************ Best Matches for Motif ID 39 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primaryOriginal Motif Original Motif Forward 6 16 0.0381161 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: HTBVVVDGGACCACCCRGRDBG -----SMAGRSCAGSSYGGBS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryReverse Complement Original Motif Forward 4 16 0.0406922 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH ---SBCCKSSCTGSMCTRS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Reverse Complement Reverse Complement Backward 1 16 0.0416812 Species: Mus musculus Consensus sequence (original motif): HDHDDCCAGACABBHVH Consensus sequence (reverse complement motif): HVHBVTGTCTGGDDHDD Alignment: HVHBVTGTCTGGDDHDD -SBCCKSSCTGSMCTRS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primaryOriginal Motif Original Motif Backward 2 16 0.0417968 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: HDGHHBHRGACCACCCGSVDVG -----SMAGRSCAGSSYGGBS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primaryReverse Complement Reverse Complement Backward 6 16 0.0424976 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT --SBCCKSSCTGSMCTRS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 40 Motif name: C040 Consensus sequence (original motif): RSTGASYTCMARSYCAGY Consensus sequence (reverse complement motif): KCTGMSKTYGAMSTCASM ************************************************************************ Best Matches for Motif ID 40 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Backward 5 18 0.0426851 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH RSTGASYTCMARSYCAGY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Backward 1 18 0.0443113 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB -----KCTGMSKTYGAMSTCASM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primaryOriginal Motif Original Motif Forward 5 18 0.0450319 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DTVBDDRGACCACCCAGDWDGBH ----RSTGASYTCMARSYCAGY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondaryReverse Complement Reverse Complement Backward 6 18 0.0455665 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM KCTGMSKTYGAMSTCASM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Original Motif Backward 3 18 0.0457782 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH ---RSTGASYTCMARSYCAGY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 41 Motif name: C041 Consensus sequence (original motif): CSGAGGCMKAGGCASS Consensus sequence (reverse complement motif): SSTGCCTYRGCCTCSG ************************************************************************ Best Matches for Motif ID 41 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Reverse Complement Original Motif Forward 3 16 0.0297471 Species: Mus musculus Consensus sequence (original motif): HDTBHHCCHTAGCAACVVDHHHH Consensus sequence (reverse complement motif): HHHHDVVGTTGCTAHGGDHBAHH Alignment: HDTBHHCCHTAGCAACVVDHHHH --SSTGCCTYRGCCTCSG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondaryReverse Complement Reverse Complement Forward 2 16 0.0308327 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV -SSTGCCTYRGCCTCSG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Reverse Complement Original Motif Backward 6 16 0.0317547 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: DBBVDDDRTRGCGTCBBYTHGA -SSTGCCTYRGCCTCSG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Reverse Complement Backward 1 16 0.0317742 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: DHHDGGGCGRGGKHBH CSGAGGCMKAGGCASS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondaryOriginal Motif Reverse Complement Backward 1 16 0.0321641 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: BHVDCCCCDCCCBDBH CSGAGGCMKAGGCASS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 42 Motif name: C042 Consensus sequence (original motif): WGTCCKRGAACYMACTCW Consensus sequence (reverse complement motif): WGAGTRMGTTCKRGGACW ************************************************************************ Best Matches for Motif ID 42 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primaryReverse Complement Reverse Complement Forward 5 18 0.0266184 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT ----WGAGTRMGTTCKRGGACW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Original Motif Original Motif Forward 5 18 0.0330025 Species: Mus musculus Consensus sequence (original motif): HDTBHHCCHTAGCAACVVDHHHH Consensus sequence (reverse complement motif): HHHHDVVGTTGCTAHGGDHBAHH Alignment: HDTBHHCCHTAGCAACVVDHHHH ----WGTCCKRGAACYMACTCW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Backward 5 18 0.03417 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH -WGTCCKRGAACYMACTCW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryReverse Complement Reverse Complement Forward 5 18 0.0347873 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV ----WGAGTRMGTTCKRGGACW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryOriginal Motif Original Motif Forward 5 18 0.035399 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: VCTBHBVCTTGGWTACVVVVVDB ----WGTCCKRGAACYMACTCW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 43 Motif name: C043 Consensus sequence (original motif): WWAAWAAAAAARAATW Consensus sequence (reverse complement motif): WATTMTTTTTTWTTWW ************************************************************************ Best Matches for Motif ID 43 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Forward 2 16 0.0232401 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH -WWAAWAAAAAARAATW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Original Motif Original Motif Backward 1 16 0.0288687 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH -WWAAWAAAAAARAATW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Reverse Complement Reverse Complement Backward 1 16 0.0296812 Species: Mus musculus Consensus sequence (original motif): HARTHAATTAWTAVDHD Consensus sequence (reverse complement motif): DHDBTAWTAATTHAKTH Alignment: DHDBTAWTAATTHAKTH -WATTMTTTTTTWTTWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00051 Sox8_primary Reverse Complement Original Motif Forward 2 16 0.0320831 Species: Mus musculus Consensus sequence (original motif): DDATBWATTGTTHHDDD Consensus sequence (reverse complement motif): DDDHDAACAATWBATDD Alignment: DDATBWATTGTTHHDDD -WATTMTTTTTTWTTWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondaryReverse Complement Reverse Complement Backward 1 16 0.0327018 Species: Mus musculus Consensus sequence (original motif): ADDDYAWAACAAMAHH Consensus sequence (reverse complement motif): HDTYTTGTTWTKDDDT Alignment: HDTYTTGTTWTKDDDT WATTMTTTTTTWTTWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 44 Motif name: C044 Consensus sequence (original motif): BVAGAGGCAGRVSGATB Consensus sequence (reverse complement motif): BATCSVMCTGCCTCTVB ************************************************************************ Best Matches for Motif ID 44 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondaryOriginal Motif Original Motif Backward 2 17 0.0438724 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV ----BVAGAGGCAGRVSGATB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondaryReverse Complement Reverse Complement Forward 2 17 0.046578 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH -BATCSVMCTGCCTCTVB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Reverse Complement Original Motif Forward 1 17 0.046833 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: DDBBBCACTGCABTBBB BATCSVMCTGCCTCTVB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Original Motif Reverse Complement Forward 5 17 0.049551 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: TCDAMVBGACGCMAKDDDVBBD ----BVAGAGGCAGRVSGATB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00095 Zfp691_secondaryReverse Complement Original Motif Backward 1 17 0.0496109 Species: Mus musculus Consensus sequence (original motif): DABBWGACTCCTHDVHV Consensus sequence (reverse complement motif): VHBDDAGGAGTCWBBTD Alignment: DABBWGACTCCTHDVHV BATCSVMCTGCCTCTVB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 45 Motif name: C045 Consensus sequence (original motif): RYAGMCMKGKCTRY Consensus sequence (reverse complement motif): MKAGYCYRGRCTKK ************************************************************************ Best Matches for Motif ID 45 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Reverse Complement Forward 2 14 0.0303562 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK -RYAGMCMKGKCTRY------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00086 Irf3_secondaryOriginal Motif Original Motif Forward 1 14 0.0355506 Species: Mus musculus Consensus sequence (original motif): DDAGAADGGDSCDV Consensus sequence (reverse complement motif): BHGSDCCDTTCTHH Alignment: DDAGAADGGDSCDV RYAGMCMKGKCTRY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondaryReverse Complement Reverse Complement Forward 2 14 0.0391606 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: HVDVGGGHGGGGDBHB -MKAGYCYRGRCTKK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_primary Reverse Complement Reverse Complement Backward 2 14 0.0399089 Species: Mus musculus Consensus sequence (original motif): BHBBKKACGTMMVDBVB Consensus sequence (reverse complement motif): BVVDVRYACGTRYVBHB Alignment: BVVDVRYACGTRYVBHB --MKAGYCYRGRCTKK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryReverse Complement Original Motif Forward 7 14 0.0406925 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB ------MKAGYCYRGRCTKK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 46 Motif name: C046 Consensus sequence (original motif): KSTGKCCTRGAACWSM Consensus sequence (reverse complement motif): YSWGTTCKAGGYCASY ************************************************************************ Best Matches for Motif ID 46 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_primary Original Motif Original Motif Backward 1 16 0.033819 Species: Mus musculus Consensus sequence (original motif): DCTTTCKAGGAATHHV Consensus sequence (reverse complement motif): VHHATTCCTYGAAAGD Alignment: DCTTTCKAGGAATHHV KSTGKCCTRGAACWSM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00414 Ets1 Original Motif Original Motif Forward 1 16 0.0383006 Species: Mus musculus Consensus sequence (original motif): BDDDHACCGGAARTVDD Consensus sequence (reverse complement motif): DDBAMTTCCGGTDHDHB Alignment: BDDDHACCGGAARTVDD KSTGKCCTRGAACWSM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondaryReverse Complement Reverse Complement Backward 5 16 0.0428174 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: DVVTTVGTGGGHGGYAMHWHHHY ---YSWGTTCKAGGYCASY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Backward 6 16 0.0436721 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB --YSWGTTCKAGGYCASY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00213 Hoxa9 Reverse Complement Reverse Complement Backward 1 16 0.0441221 Species: Mus musculus Consensus sequence (original motif): DCGGYCATWAAAWTADW Consensus sequence (reverse complement motif): WDTAWTTTWATGKCCGD Alignment: WDTAWTTTWATGKCCGD -YSWGTTCKAGGYCASY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 47 Motif name: C047 Consensus sequence (original motif): TSGAAMTCACTMKGTASA Consensus sequence (reverse complement motif): TSTACRYAGTGAYTTCSA ************************************************************************ Best Matches for Motif ID 47 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondaryOriginal Motif Reverse Complement Forward 4 18 0.0369958 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR ---TSGAAMTCACTMKGTASA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Reverse Complement Original Motif Backward 1 18 0.045149 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: TCDAMVBGACGCMAKDDDVBBD ----TSTACRYAGTGAYTTCSA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryReverse Complement Reverse Complement Backward 3 18 0.0467709 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC --TSTACRYAGTGAYTTCSA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondaryReverse Complement Original Motif Forward 3 18 0.047063 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB --TSTACRYAGTGAYTTCSA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryOriginal Motif Reverse Complement Forward 6 18 0.0479788 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB -----TSGAAMTCACTMKGTASA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 48 Motif name: C048 Consensus sequence (original motif): SGAGGCWSWGGCAGSC Consensus sequence (reverse complement motif): GSCTGCCWSWGCCTCS ************************************************************************ Best Matches for Motif ID 48 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondaryOriginal Motif Original Motif Forward 7 16 0.0237024 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV ------SGAGGCWSWGGCAGSC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondaryReverse Complement Reverse Complement Forward 1 16 0.0327172 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH GSCTGCCWSWGCCTCS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Reverse Complement Backward 5 16 0.034796 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ---SGAGGCWSWGGCAGSC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Original Motif Forward 4 16 0.036242 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ---GSCTGCCWSWGCCTCS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Reverse Complement Original Motif Forward 2 16 0.0393403 Species: Mus musculus Consensus sequence (original motif): HDTBHHCCHTAGCAACVVDHHHH Consensus sequence (reverse complement motif): HHHHDVVGTTGCTAHGGDHBAHH Alignment: HDTBHHCCHTAGCAACVVDHHHH -GSCTGCCWSWGCCTCS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 49 Motif name: C049 Consensus sequence (original motif): WAWWAAAATAAWT Consensus sequence (reverse complement motif): AWTTATTTTWWTW ************************************************************************ Best Matches for Motif ID 49 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondaryOriginal Motif Original Motif Forward 2 13 0.0235016 Species: Mus musculus Consensus sequence (original motif): ADDDYAWAACAAMAHH Consensus sequence (reverse complement motif): HDTYTTGTTWTKDDDT Alignment: ADDDYAWAACAAMAHH -WAWWAAAATAAWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Original Motif Original Motif Forward 3 13 0.0251228 Species: Mus musculus Consensus sequence (original motif): HHWAWGTAAAYAAAVDB Consensus sequence (reverse complement motif): BDVTTTKTTTACWTWHH Alignment: HHWAWGTAAAYAAAVDB --WAWWAAAATAAWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Reverse Complement Backward 5 13 0.0269927 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB AWTTATTTTWWTW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Original Motif Forward 3 13 0.0270626 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: DWAATRTAAACAAWVVB --WAWWAAAATAAWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primaryReverse Complement Reverse Complement Forward 2 13 0.0290157 Species: Mus musculus Consensus sequence (original motif): HDYAAAHAAMAADHD Consensus sequence (reverse complement motif): HHHTTRTTDTTTKDH Alignment: HHHTTRTTDTTTKDH -AWTTATTTTWWTW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 50 Motif name: C050 Consensus sequence (original motif): CBGCCKCYSCCTCYMG Consensus sequence (reverse complement motif): CYKGAGGSMGRGGCVG ************************************************************************ Best Matches for Motif ID 50 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Forward 6 16 0.0274857 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH -----CBGCCKCYSCCTCYMG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondaryOriginal Motif Reverse Complement Forward 3 16 0.0294264 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV --CBGCCKCYSCCTCYMG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primaryReverse Complement Reverse Complement Forward 1 16 0.0295783 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: BHHDYGGGGGGGGBVD CYKGAGGSMGRGGCVG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondaryReverse Complement Reverse Complement Forward 1 16 0.0315534 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: HVDVGGGHGGGGDBHB CYKGAGGSMGRGGCVG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Backward 3 16 0.0322386 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH -----CBGCCKCYSCCTCYMG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 51 Motif name: C051 Consensus sequence (original motif): SGCCCCCHCCCS Consensus sequence (reverse complement motif): SGGGHGGGGGCS ************************************************************************ Best Matches for Motif ID 51 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primaryOriginal Motif Original Motif Backward 3 12 0.00935805 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC -SGCCCCCHCCCS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Reverse Complement Reverse Complement Backward 2 12 0.0122535 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: DHHDGGGCGRGGKHBH ---SGGGHGGGGGCS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primaryOriginal Motif Original Motif Backward 4 12 0.0145224 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB -SGCCCCCHCCCS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Forward 4 12 0.0145616 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ---SGCCCCCHCCCS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Original Motif Backward 9 12 0.0226961 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH ---SGCCCCCHCCCS-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 52 Motif name: C052 Consensus sequence (original motif): GAGTBVSAGGCMAGVC Consensus sequence (reverse complement motif): GVCTYGCCTSVVACTC ************************************************************************ Best Matches for Motif ID 52 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Reverse Complement Forward 5 16 0.0423398 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK ----GAGTBVSAGGCMAGVC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Reverse Complement Backward 6 16 0.047746 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH --GVCTYGCCTSVVACTC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00064 Sox18_secondaryOriginal Motif Original Motif Backward 1 16 0.0490125 Species: Mus musculus Consensus sequence (original motif): DBVBTRAATTYADDHV Consensus sequence (reverse complement motif): VDHDTKAATTMABBBH Alignment: DBVBTRAATTYADDHV GAGTBVSAGGCMAGVC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Original Motif Backward 8 16 0.0499529 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV GVCTYGCCTSVVACTC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondaryOriginal Motif Reverse Complement Forward 1 16 0.0535021 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH GAGTBVSAGGCMAGVC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 53 Motif name: C053 Consensus sequence (original motif): RMACRGAGAAAYCCTGKY Consensus sequence (reverse complement motif): MRCAGGMTTTCTCKGTYK ************************************************************************ Best Matches for Motif ID 53 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryReverse Complement Reverse Complement Backward 4 18 0.0388232 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB --MRCAGGMTTTCTCKGTYK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Original Motif Original Motif Backward 2 18 0.0410442 Species: Mus musculus Consensus sequence (original motif): HDTBHHCCHTAGCAACVVDHHHH Consensus sequence (reverse complement motif): HHHHDVVGTTGCTAHGGDHBAHH Alignment: HDTBHHCCHTAGCAACVVDHHHH ----RMACRGAGAAAYCCTGKY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondaryReverse Complement Original Motif Forward 4 18 0.0413339 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB ---MRCAGGMTTTCTCKGTYK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryOriginal Motif Reverse Complement Forward 1 18 0.0440408 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: VCTBHBVCTTGGWTACVVVVVDB RMACRGAGAAAYCCTGKY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primaryOriginal Motif Reverse Complement Backward 4 18 0.0442508 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH -RMACRGAGAAAYCCTGKY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 54 Motif name: C054 Consensus sequence (original motif): SSCCDCCCCCCCSS Consensus sequence (reverse complement motif): SSGGGGGGGHGGSS ************************************************************************ Best Matches for Motif ID 54 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondaryOriginal Motif Original Motif Forward 3 14 0.0162118 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: HBBBCCGCCCCWHHHV --SSCCDCCCCCCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Forward 4 14 0.0185646 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ---SSCCDCCCCCCCSS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primaryOriginal Motif Original Motif Forward 2 14 0.0201409 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC -SSCCDCCCCCCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondaryReverse Complement Reverse Complement Forward 1 14 0.0221949 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: HHHHDGGGGCGGDBHDV SSGGGGGGGHGGSS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primaryOriginal Motif Original Motif Backward 2 14 0.0265213 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB -SSCCDCCCCCCCSS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 55 Motif name: C055 Consensus sequence (original motif): MKAGAGMKMKAGAGMK Consensus sequence (reverse complement motif): RYCTCTRRRRCTCTRR ************************************************************************ Best Matches for Motif ID 55 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondaryOriginal Motif Original Motif Backward 1 16 0.039204 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: VVDBASACAAAGRADH MKAGAGMKMKAGAGMK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00080 Gata5_secondaryOriginal Motif Original Motif Forward 2 16 0.0398738 Species: Mus musculus Consensus sequence (original motif): VVBHRAGATATCWDHBB Consensus sequence (reverse complement motif): VVHHWGATATCTMHBBV Alignment: VVBHRAGATATCWDHBB -MKAGAGMKMKAGAGMK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00019 Zbtb12_primaryReverse Complement Reverse Complement Backward 1 16 0.0427919 Species: Mus musculus Consensus sequence (original motif): BDHRBGTTCTAGATCVB Consensus sequence (reverse complement motif): BBGATCTAGAACBKHDB Alignment: BBGATCTAGAACBKHDB -RYCTCTRRRRCTCTRR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00075 Sox15_primary Original Motif Original Motif Backward 1 16 0.0433178 Species: Mus musculus Consensus sequence (original motif): HDDDDAACAATWRRBHD Consensus sequence (reverse complement motif): DHVKMWATTGTTHDHDH Alignment: HDDDDAACAATWRRBHD -MKAGAGMKMKAGAGMK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryReverse Complement Original Motif Forward 8 16 0.0454282 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -------RYCTCTRRRRCTCTRR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 56 Motif name: C056 Consensus sequence (original motif): AWMAAAYWRAMAAWH Consensus sequence (reverse complement motif): HWTTYTKWMTTTYWT ************************************************************************ Best Matches for Motif ID 56 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Forward 2 15 0.0213582 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH -AWMAAAYWRAMAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primaryOriginal Motif Original Motif Forward 1 15 0.0251847 Species: Mus musculus Consensus sequence (original motif): HDYAAAHAAMAADHD Consensus sequence (reverse complement motif): HHHTTRTTDTTTKDH Alignment: HDYAAAHAAMAADHD AWMAAAYWRAMAAWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondaryOriginal Motif Original Motif Forward 2 15 0.0274993 Species: Mus musculus Consensus sequence (original motif): DBTHHAAAAAAAAVHDH Consensus sequence (reverse complement motif): DDHBTTTTTTTTHDAVH Alignment: DBTHHAAAAAAAAVHDH -AWMAAAYWRAMAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Original Motif Original Motif Backward 2 15 0.027785 Species: Mus musculus Consensus sequence (original motif): HARTHAATTAWTAVDHD Consensus sequence (reverse complement motif): DHDBTAWTAATTHAKTH Alignment: HARTHAATTAWTAVDHD -AWMAAAYWRAMAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Reverse Complement Forward 2 15 0.02926 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB -HWTTYTKWMTTTYWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 57 Motif name: C057 Consensus sequence (original motif): WRMARYAAMARYAAMAWH Consensus sequence (reverse complement motif): HWTRTTMKTYTTMKTYKW ************************************************************************ Best Matches for Motif ID 57 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Forward 2 18 0.0381479 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW -WRMARYAAMARYAAMAWH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryOriginal Motif Reverse Complement Backward 1 18 0.052401 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC ----WRMARYAAMARYAAMAWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondaryReverse Complement Reverse Complement Forward 3 18 0.0540821 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR --HWTRTTMKTYTTMKTYKW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Backward 3 18 0.0542401 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV --HWTRTTMKTYTTMKTYKW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondaryOriginal Motif Reverse Complement Forward 4 18 0.0552305 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HHHBBMGATAVHATCWVVDHVH ---WRMARYAAMARYAAMAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 58 Motif name: C058 Consensus sequence (original motif): CYCCBCSGVCYCCBC Consensus sequence (reverse complement motif): GVGGMGVCSGBGGMG ************************************************************************ Best Matches for Motif ID 58 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Reverse Complement Backward 7 15 0.0246506 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK -GVGGMGVCSGBGGMG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_secondaryReverse Complement Reverse Complement Backward 1 15 0.0266507 Species: Mus musculus Consensus sequence (original motif): VVVRACAGVCBCDCC Consensus sequence (reverse complement motif): GGDGBGVCTGTKVVB Alignment: GGDGBGVCTGTKVVB GVGGMGVCSGBGGMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondaryOriginal Motif Original Motif Forward 1 15 0.0296277 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH CYCCBCSGVCYCCBC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Original Motif Backward 1 15 0.0309574 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB --CYCCBCSGVCYCCBC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondaryOriginal Motif Original Motif Forward 1 15 0.0331968 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: BHVDCCCCDCCCBDBH CYCCBCSGVCYCCBC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 59 Motif name: C059 Consensus sequence (original motif): SYCCDCCCCCRG Consensus sequence (reverse complement motif): CMGGGGGDGGKS ************************************************************************ Best Matches for Motif ID 59 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Backward 5 12 0.0197332 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ------SYCCDCCCCCRG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondaryReverse Complement Reverse Complement Forward 3 12 0.0224264 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: HHHHDGGGGCGGDBHDV --CMGGGGGDGGKS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondaryReverse Complement Reverse Complement Backward 5 12 0.0231684 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: HVDVGGGHGGGGDBHB CMGGGGGDGGKS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondaryReverse Complement Reverse Complement Backward 3 12 0.023387 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: BHHHWGGGGCGGBBVH --CMGGGGGDGGKS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryReverse Complement Reverse Complement Backward 7 12 0.0246213 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV -----CMGGGGGDGGKS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 60 Motif name: C060 Consensus sequence (original motif): SMGGCAKMGGCAKS Consensus sequence (reverse complement motif): SYTGCCYYTGCCYS ************************************************************************ Best Matches for Motif ID 60 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_secondaryReverse Complement Reverse Complement Backward 2 14 0.0309254 Species: Mus musculus Consensus sequence (original motif): DTWGCCKSMGGCRHH Consensus sequence (reverse complement motif): HHKGCCYSRGGCWAD Alignment: HHKGCCYSRGGCWAD SYTGCCYYTGCCYS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Reverse Complement Reverse Complement Forward 4 14 0.0349665 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: HHBVHTGACCTTGVDHD ---SYTGCCYYTGCCYS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondaryReverse Complement Reverse Complement Forward 6 14 0.0406726 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH -----SYTGCCYYTGCCYS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00028 Tcfap2e_primaryReverse Complement Reverse Complement Forward 1 14 0.0419455 Species: Mus musculus Consensus sequence (original motif): HHHGCCTSAGGCDAD Consensus sequence (reverse complement motif): DTHGCCTSAGGCHHH Alignment: DTHGCCTSAGGCHHH SYTGCCYYTGCCYS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondaryReverse Complement Original Motif Forward 1 14 0.0436588 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: BHVDCCCCDCCCBDBH SYTGCCYYTGCCYS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 61 Motif name: C061 Consensus sequence (original motif): MRGMMBAGGCHGGCCK Consensus sequence (reverse complement motif): RGGCCDGCCTBRRCMY ************************************************************************ Best Matches for Motif ID 61 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondaryOriginal Motif Original Motif Forward 1 16 0.0354983 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB MRGMMBAGGCHGGCCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Reverse Complement Forward 6 16 0.0371599 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH -----RGGCCDGCCTBRRCMY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryReverse Complement Original Motif Backward 2 16 0.0397188 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB ------RGGCCDGCCTBRRCMY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primaryReverse Complement Original Motif Forward 8 16 0.0410046 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: ABBBBVVRGACCACCCACRDBBM -------RGGCCDGCCTBRRCMY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondaryOriginal Motif Original Motif Backward 2 16 0.0416624 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV -----MRGMMBAGGCHGGCCK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 62 Motif name: C062 Consensus sequence (original motif): WWAMAWRMAMAYWAAHWW Consensus sequence (reverse complement motif): WWDTTWMTRTRKWTYTWW ************************************************************************ Best Matches for Motif ID 62 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Reverse Complement Backward 4 18 0.0496099 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH -WWDTTWMTRTRKWTYTWW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Forward 4 18 0.0618489 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV ---WWDTTWMTRTRKWTYTWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondaryOriginal Motif Original Motif Backward 4 18 0.0618699 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: MWSMBAARRATGCDCABHATGD -WWAMAWRMAMAYWAAHWW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryOriginal Motif Reverse Complement Forward 4 18 0.0626028 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC ---WWAMAWRMAMAYWAAHWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondaryOriginal Motif Reverse Complement Backward 2 18 0.065917 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HHHBBMGATAVHATCWVVDHVH ---WWAMAWRMAMAYWAAHWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 63 Motif name: C063 Consensus sequence (original motif): MAAKMWAAAAWKHAA Consensus sequence (reverse complement motif): TTHRWTTTTWYRTTY ************************************************************************ Best Matches for Motif ID 63 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondaryReverse Complement Reverse Complement Forward 1 15 0.0344456 Species: Mus musculus Consensus sequence (original motif): ADDDYAWAACAAMAHH Consensus sequence (reverse complement motif): HDTYTTGTTWTKDDDT Alignment: HDTYTTGTTWTKDDDT TTHRWTTTTWYRTTY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_secondaryReverse Complement Reverse Complement Forward 1 15 0.0345147 Species: Mus musculus Consensus sequence (original motif): HDBAHCAWAACADWDVD Consensus sequence (reverse complement motif): DVHWDTGTTWTGDTBDH Alignment: DVHWDTGTTWTGDTBDH TTHRWTTTTWYRTTY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondaryReverse Complement Reverse Complement Backward 1 15 0.0355538 Species: Mus musculus Consensus sequence (original motif): DBTHHAAAAAAAAVHDH Consensus sequence (reverse complement motif): DDHBTTTTTTTTHDAVH Alignment: DDHBTTTTTTTTHDAVH --TTHRWTTTTWYRTTY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Reverse Complement Reverse Complement Backward 1 15 0.0356888 Species: Mus musculus Consensus sequence (original motif): HARTHAATTAWTAVDHD Consensus sequence (reverse complement motif): DHDBTAWTAATTHAKTH Alignment: DHDBTAWTAATTHAKTH --TTHRWTTTTWYRTTY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00213 Hoxa9 Reverse Complement Reverse Complement Forward 1 15 0.0367298 Species: Mus musculus Consensus sequence (original motif): DCGGYCATWAAAWTADW Consensus sequence (reverse complement motif): WDTAWTTTWATGKCCGD Alignment: WDTAWTTTWATGKCCGD TTHRWTTTTWYRTTY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 64 Motif name: C064 Consensus sequence (original motif): DAAAKAAAAMAAK Consensus sequence (reverse complement motif): RTTYTTTTRTTTD ************************************************************************ Best Matches for Motif ID 64 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Reverse Complement Reverse Complement Forward 3 13 0.0175156 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: HHVBYTTTTTTTTDDVV --RTTYTTTTRTTTD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00028 Tcfap2e_secondaryOriginal Motif Original Motif Forward 1 13 0.0210094 Species: Mus musculus Consensus sequence (original motif): HDCDBRAAAAAADD Consensus sequence (reverse complement motif): DDTTTTTTMBDGDH Alignment: HDCDBRAAAAAADD DAAAKAAAAMAAK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_secondaryReverse Complement Reverse Complement Backward 1 13 0.030589 Species: Mus musculus Consensus sequence (original motif): HHHAYAAYAACAHHH Consensus sequence (reverse complement motif): HDDTGTTKTTKTHHD Alignment: HDDTGTTKTTKTHHD --RTTYTTTTRTTTD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondaryReverse Complement Reverse Complement Backward 4 13 0.0322312 Species: Mus musculus Consensus sequence (original motif): DBTHHAAAAAAAAVHDH Consensus sequence (reverse complement motif): DDHBTTTTTTTTHDAVH Alignment: DDHBTTTTTTTTHDAVH -RTTYTTTTRTTTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Reverse Complement Backward 1 13 0.0326524 Species: Mus musculus Consensus sequence (original motif): HDHYYAATAAAAHHHH Consensus sequence (reverse complement motif): HDHHTTTTATTKKHDD Alignment: HDHHTTTTATTKKHDD ---RTTYTTTTRTTTD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 65 Motif name: C065 Consensus sequence (original motif): MSTGAGWTCMASK Consensus sequence (reverse complement motif): YSTRGAWCTCASR ************************************************************************ Best Matches for Motif ID 65 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00080 Gata5_secondaryOriginal Motif Reverse Complement Backward 3 13 0.0144176 Species: Mus musculus Consensus sequence (original motif): VVBHRAGATATCWDHBB Consensus sequence (reverse complement motif): VVHHWGATATCTMHBBV Alignment: VVHHWGATATCTMHBBV --MSTGAGWTCMASK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00148 Hdx Reverse Complement Original Motif Backward 4 13 0.0160219 Species: Mus musculus Consensus sequence (original motif): DDKDHGAAATCAHHBHV Consensus sequence (reverse complement motif): BDBDHTGATTTCDHYDD Alignment: DDKDHGAAATCAHHBHV -YSTRGAWCTCASR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_primary Original Motif Original Motif Forward 3 13 0.0188193 Species: Mus musculus Consensus sequence (original motif): BDBVMGGGGTCAABHDV Consensus sequence (reverse complement motif): BHHVTTGACCCCYVVDB Alignment: BDBVMGGGGTCAABHDV --MSTGAGWTCMASK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00020 Atf1_primary Original Motif Reverse Complement Forward 3 13 0.0224584 Species: Mus musculus Consensus sequence (original motif): DBDRTGACGTCAYHRD Consensus sequence (reverse complement motif): DMDMTGACGTCAKHBD Alignment: DMDMTGACGTCAKHBD --MSTGAGWTCMASK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Reverse Complement Original Motif Backward 5 13 0.0232284 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH YSTRGAWCTCASR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 66 Motif name: C066 Consensus sequence (original motif): MAMTCCCMSKGCCTCTK Consensus sequence (reverse complement motif): YAGAGGCRSYGGGARTR ************************************************************************ Best Matches for Motif ID 66 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondaryReverse Complement Original Motif Forward 6 17 0.03808 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV -----YAGAGGCRSYGGGARTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Backward 4 17 0.0499224 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB ---YAGAGGCRSYGGGARTR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondaryReverse Complement Reverse Complement Backward 1 17 0.0510562 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: HHHHDGGGGCGGDBHDV YAGAGGCRSYGGGARTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryReverse Complement Reverse Complement Backward 4 17 0.0517099 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV ---YAGAGGCRSYGGGARTR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Reverse Complement Forward 3 17 0.0522208 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK --YAGAGGCRSYGGGARTR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 67 Motif name: C067 Consensus sequence (original motif): WDAAAAAARKAAAD Consensus sequence (reverse complement motif): DTTTRKTTTTTTDW ************************************************************************ Best Matches for Motif ID 67 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Backward 1 14 0.0232781 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH ---WDAAAAAARKAAAD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primaryOriginal Motif Original Motif Backward 1 14 0.0263721 Species: Mus musculus Consensus sequence (original motif): HDYAAAHAAMAADHD Consensus sequence (reverse complement motif): HHHTTRTTDTTTKDH Alignment: HDYAAAHAAMAADHD -WDAAAAAARKAAAD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00014 Sox17_primary Reverse Complement Reverse Complement Forward 2 14 0.0301541 Species: Mus musculus Consensus sequence (original motif): VDDAACAATTVAWHD Consensus sequence (reverse complement motif): DDWTBAATTGTTDDB Alignment: DDWTBAATTGTTDDB -DTTTRKTTTTTTDW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Original Motif Forward 4 14 0.0307495 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HBDDDAACAAAGRVBHH ---WDAAAAAARKAAAD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Original Motif Forward 4 14 0.0312958 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH ---WDAAAAAARKAAAD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 68 Motif name: C068 Consensus sequence (original motif): BGCYKCTGCMTCCM Consensus sequence (reverse complement motif): YGGAYGCAGYKGCV ************************************************************************ Best Matches for Motif ID 68 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondaryOriginal Motif Reverse Complement Forward 4 14 0.0242069 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV ---BGCYKCTGCMTCCM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Forward 4 14 0.02581 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ---BGCYKCTGCMTCCM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Reverse Complement Reverse Complement Forward 2 14 0.0294733 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: BBBAVTGCAGTGBBVDD -YGGAYGCAGYKGCV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Backward 10 14 0.0297174 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH BGCYKCTGCMTCCM--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondaryOriginal Motif Original Motif Forward 1 14 0.0300511 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH BGCYKCTGCMTCCM--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 69 Motif name: C069 Consensus sequence (original motif): AHAAMAAYWDYAAMAAHD Consensus sequence (reverse complement motif): DHTTYTTMDWMTTYTTHT ************************************************************************ Best Matches for Motif ID 69 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Backward 3 18 0.0547241 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW --AHAAMAAYWDYAAMAAHD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Backward 4 18 0.0556229 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV -DHTTYTTMDWMTTYTTHT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryOriginal Motif Reverse Complement Forward 1 18 0.0564427 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC AHAAMAAYWDYAAMAAHD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondaryOriginal Motif Reverse Complement Backward 4 18 0.058939 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HHHBBMGATAVHATCWVVDHVH -AHAAMAAYWDYAAMAAHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondaryReverse Complement Reverse Complement Backward 4 18 0.064465 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR -DHTTYTTMDWMTTYTTHT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 70 Motif name: C070 Consensus sequence (original motif): GVGABAGAVAGASVK Consensus sequence (reverse complement motif): RBSTCTVTCTBTCVC ************************************************************************ Best Matches for Motif ID 70 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score >UP00011 Irf6_secondaryReverse Complement Original Motif Backward 1 15 0.0371635 Species: Mus musculus Consensus sequence (original motif): VBBACTCYCGGKHDV Consensus sequence (reverse complement motif): VDDRCCGMGAGTBBB Alignment: VBBACTCYCGGKHDV RBSTCTVTCTBTCVC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondaryOriginal Motif Original Motif Backward 1 15 0.0394179 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: VVDBASACAAAGRADH -GVGABAGAVAGASVK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00018 Irf4_secondaryReverse Complement Original Motif Forward 1 15 0.0452113 Species: Mus musculus Consensus sequence (original motif): VVBAYTCTCGGWHDB Consensus sequence (reverse complement motif): BHHWCCGAGAMTVVB Alignment: VVBAYTCTCGGWHDB RBSTCTVTCTBTCVC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Forward 1 15 0.0480451 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH GVGABAGAVAGASVK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Reverse Complement Reverse Complement Forward 3 15 0.0486114 Species: Mus musculus Consensus sequence (original motif): HDHDDCCAGACABBHVH Consensus sequence (reverse complement motif): HVHBVTGTCTGGDDHDD Alignment: HVHBVTGTCTGGDDHDD --RBSTCTVTCTBTCVC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 71 Motif name: C071 Consensus sequence (original motif): SVCCACSVSCACCBS Consensus sequence (reverse complement motif): SBGGTGSVSGTGGVS ************************************************************************ Best Matches for Motif ID 71 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primaryOriginal Motif Original Motif Backward 1 15 0.0205519 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB -SVCCACSVSCACCBS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Original Motif Backward 3 15 0.020698 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB SVCCACSVSCACCBS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Reverse Complement Forward 2 15 0.0211186 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK -SBGGTGSVSGTGGVS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Original Motif Backward 3 15 0.022472 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH ------SVCCACSVSCACCBS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Forward 7 15 0.0250115 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH ------SVCCACSVSCACCBS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 72 Motif name: C072 Consensus sequence (original motif): SWAGCCVDGGCW Consensus sequence (reverse complement motif): WGCCHVGGCTWS ************************************************************************ Best Matches for Motif ID 72 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_secondaryOriginal Motif Reverse Complement Forward 2 12 0.00558864 Species: Mus musculus Consensus sequence (original motif): DTWGCCKSMGGCRHH Consensus sequence (reverse complement motif): HHKGCCYSRGGCWAD Alignment: HHKGCCYSRGGCWAD -SWAGCCVDGGCW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Original Motif Original Motif Forward 2 12 0.00743548 Species: Mus musculus Consensus sequence (original motif): BDWAGGCGTGBCHHD Consensus sequence (reverse complement motif): HHDGBCACGCCTWDB Alignment: BDWAGGCGTGBCHHD -SWAGCCVDGGCW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00028 Tcfap2e_primaryOriginal Motif Original Motif Forward 2 12 0.0141542 Species: Mus musculus Consensus sequence (original motif): HHHGCCTSAGGCDAD Consensus sequence (reverse complement motif): DTHGCCTSAGGCHHH Alignment: HHHGCCTSAGGCDAD -SWAGCCVDGGCW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_primaryReverse Complement Original Motif Forward 3 12 0.0187577 Species: Mus musculus Consensus sequence (original motif): WHHSCCYSRGGSDAD Consensus sequence (reverse complement motif): DTHSCCKSMGGSHHW Alignment: WHHSCCYSRGGSDAD --WGCCHVGGCTWS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Reverse Complement Forward 2 12 0.0187696 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK -SWAGCCVDGGCW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 73 Motif name: C073 Consensus sequence (original motif): YMWGSMYAGCCRKSKCTR Consensus sequence (reverse complement motif): KAGYSYKGGCTKRSCWYK ************************************************************************ Best Matches for Motif ID 73 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryOriginal Motif Reverse Complement Forward 5 18 0.0271167 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB ----YMWGSMYAGCCRKSKCTR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Forward 6 18 0.0280669 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB -----KAGYSYKGGCTKRSCWYK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Backward 3 18 0.0284377 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH ---YMWGSMYAGCCRKSKCTR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Reverse Complement Forward 3 18 0.0313979 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK --KAGYSYKGGCTKRSCWYK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryOriginal Motif Original Motif Backward 2 18 0.032852 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB ----YMWGSMYAGCCRKSKCTR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 74 Motif name: C074 Consensus sequence (original motif): CCAGGCWGGCSKS Consensus sequence (reverse complement motif): SRSGCCWGCCTGG ************************************************************************ Best Matches for Motif ID 74 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryReverse Complement Original Motif Forward 6 13 0.0257723 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB -----SRSGCCWGCCTGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondaryReverse Complement Original Motif Backward 5 13 0.0270649 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB -----SRSGCCWGCCTGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondaryOriginal Motif Reverse Complement Backward 2 13 0.0283276 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: BHBHDTGGCGGGGBDHD ---CCAGGCWGGCSKS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Reverse Complement Reverse Complement Backward 2 13 0.0313235 Species: Mus musculus Consensus sequence (original motif): BDWAGGCGTGBCHHD Consensus sequence (reverse complement motif): HHDGBCACGCCTWDB Alignment: HHDGBCACGCCTWDB -SRSGCCWGCCTGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Original Motif Backward 5 13 0.0327573 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB ------CCAGGCWGGCSKS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 75 Motif name: C075 Consensus sequence (original motif): MGGCAGMSGCAGSCK Consensus sequence (reverse complement motif): YGSCTGCSYCTGCCY ************************************************************************ Best Matches for Motif ID 75 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Original Motif Original Motif Forward 3 15 0.0343574 Species: Mus musculus Consensus sequence (original motif): BBYVVCAGCTGCBVHHD Consensus sequence (reverse complement motif): HHDVVGCAGCTGVBKVB Alignment: BBYVVCAGCTGCBVHHD --MGGCAGMSGCAGSCK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondaryReverse Complement Original Motif Forward 2 15 0.0352972 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: HBBBCCGCCCCWHHHV -YGSCTGCSYCTGCCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Reverse Complement Reverse Complement Backward 2 15 0.0363915 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: HHBVHTGACCTTGVDHD -YGSCTGCSYCTGCCY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondaryReverse Complement Original Motif Forward 3 15 0.036959 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH --YGSCTGCSYCTGCCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondaryOriginal Motif Original Motif Forward 1 15 0.0381017 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB MGGCAGMSGCAGSCK------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 76 Motif name: C076 Consensus sequence (original motif): ASCTRCCTCYBCSB Consensus sequence (reverse complement motif): VSGBKGAGGMAGST ************************************************************************ Best Matches for Motif ID 76 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondaryReverse Complement Reverse Complement Forward 1 14 0.0266758 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: BHHHWGGGGCGGBBVH VSGBKGAGGMAGST-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondaryReverse Complement Reverse Complement Backward 4 14 0.0272671 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: HHHHDGGGGCGGDBHDV VSGBKGAGGMAGST--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_secondaryReverse Complement Reverse Complement Forward 1 14 0.0302132 Species: Mus musculus Consensus sequence (original motif): CYDBYWTCCSMHBVVH Consensus sequence (reverse complement motif): DBVVDRSGGAWKVHKG Alignment: DBVVDRSGGAWKVHKG VSGBKGAGGMAGST-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primaryReverse Complement Reverse Complement Backward 2 14 0.0328017 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: BHHDYGGGGGGGGBVD -VSGBKGAGGMAGST- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_secondaryReverse Complement Reverse Complement Forward 4 14 0.0330521 Species: Mus musculus Consensus sequence (original motif): DDDTWCCCCCCGGDRVH Consensus sequence (reverse complement motif): HVKDCCGGGGGGWADDD Alignment: HVKDCCGGGGGGWADDD ---VSGBKGAGGMAGST ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 77 Motif name: C077 Consensus sequence (original motif): SBCCCCGGSSCCCCCB Consensus sequence (reverse complement motif): BGGGGGSSCCGGGGBS ************************************************************************ Best Matches for Motif ID 77 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Original Motif Backward 2 16 0.0480753 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB SBCCCCGGSSCCCCCB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Backward 1 16 0.0484396 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH -------BGGGGGSSCCGGGGBS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Forward 1 16 0.0490479 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH SBCCCCGGSSCCCCCB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondaryReverse Complement Reverse Complement Backward 1 16 0.0535184 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: HHHHDGGGGCGGDBHDV -BGGGGGSSCCGGGGBS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondaryOriginal Motif Reverse Complement Forward 1 16 0.0543092 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV SBCCCCGGSSCCCCCB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 78 Motif name: C078 Consensus sequence (original motif): YRGAYAGAGRGAYR Consensus sequence (reverse complement motif): KMTCKCTCTMTCKM ************************************************************************ Best Matches for Motif ID 78 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score >UP00011 Irf6_secondaryReverse Complement Original Motif Backward 1 14 0.0289623 Species: Mus musculus Consensus sequence (original motif): VBBACTCYCGGKHDV Consensus sequence (reverse complement motif): VDDRCCGMGAGTBBB Alignment: VDDRCCGMGAGTBBB -KMTCKCTCTMTCKM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondaryReverse Complement Reverse Complement Backward 1 14 0.0334841 Species: Mus musculus Consensus sequence (original motif): BBHBGAGTGGGAHHDB Consensus sequence (reverse complement motif): BHHDTCCCACTCBDBV Alignment: BHHDTCCCACTCBDBV --KMTCKCTCTMTCKM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00040 Irf5_secondaryOriginal Motif Original Motif Forward 1 14 0.0339287 Species: Mus musculus Consensus sequence (original motif): BHDAHCGAGARTHBV Consensus sequence (reverse complement motif): VBHAKTCTCGHTHHV Alignment: BHDAHCGAGARTHBV YRGAYAGAGRGAYR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00078 Arid3a_secondaryOriginal Motif Original Motif Forward 2 14 0.0352486 Species: Mus musculus Consensus sequence (original motif): HHVVRTATCRDVDHD Consensus sequence (reverse complement motif): DHDBDKGATAMVVDH Alignment: HHVVRTATCRDVDHD -YRGAYAGAGRGAYR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Reverse Complement Forward 8 14 0.0392148 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK -------YRGAYAGAGRGAYR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 79 Motif name: C079 Consensus sequence (original motif): ADAAAKWAAAAWAKARW Consensus sequence (reverse complement motif): WKTRTWTTTTWRTTTDT ************************************************************************ Best Matches for Motif ID 79 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Backward 1 17 0.0265367 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH ADAAAKWAAAAWAKARW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Reverse Complement Backward 2 17 0.0319437 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH ----WKTRTWTTTTWRTTTDT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondaryOriginal Motif Original Motif Backward 1 17 0.0359246 Species: Mus musculus Consensus sequence (original motif): DBTHHAAAAAAAAVHDH Consensus sequence (reverse complement motif): DDHBTTTTTTTTHDAVH Alignment: DBTHHAAAAAAAAVHDH ADAAAKWAAAAWAKARW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Original Motif Original Motif Backward 1 17 0.036697 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: BDHDDADAGATAAGADHBDHVD -----ADAAAKWAAAAWAKARW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Original Motif Original Motif Backward 1 17 0.0381106 Species: Mus musculus Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: DDAATGTAAACAAAVVB ADAAAKWAAAAWAKARW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 80 Motif name: C080 Consensus sequence (original motif): WWAAVAAMMHAAWW Consensus sequence (reverse complement motif): WWTTHRYTTBTTWW ************************************************************************ Best Matches for Motif ID 80 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Backward 1 14 0.0245388 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH ---WWAAVAAMMHAAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00170 Isl2 Reverse Complement Reverse Complement Forward 2 14 0.0341915 Species: Mus musculus Consensus sequence (original motif): MHHAAYYMATTAADWH Consensus sequence (reverse complement motif): HWDTTAATYKMTTHHR Alignment: HWDTTAATYKMTTHHR -WWTTHRYTTBTTWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondaryOriginal Motif Original Motif Backward 1 14 0.0349632 Species: Mus musculus Consensus sequence (original motif): DBTHHAAAAAAAAVHDH Consensus sequence (reverse complement motif): DDHBTTTTTTTTHDAVH Alignment: DBTHHAAAAAAAAVHDH ---WWAAVAAMMHAAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondaryOriginal Motif Original Motif Forward 1 14 0.0362632 Species: Mus musculus Consensus sequence (original motif): ADDDYAWAACAAMAHH Consensus sequence (reverse complement motif): HDTYTTGTTWTKDDDT Alignment: ADDDYAWAACAAMAHH WWAAVAAMMHAAWW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primaryOriginal Motif Original Motif Forward 1 14 0.0380401 Species: Mus musculus Consensus sequence (original motif): HDYAAAHAAMAADHD Consensus sequence (reverse complement motif): HHHTTRTTDTTTKDH Alignment: HDYAAAHAAMAADHD WWAAVAAMMHAAWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 81 Motif name: C081 Consensus sequence (original motif): BCCSHCCCSCMG Consensus sequence (reverse complement motif): CYGSGGGHSGGB ************************************************************************ Best Matches for Motif ID 81 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primaryOriginal Motif Original Motif Forward 3 12 0.0133435 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC --BCCSHCCCSCMG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondaryOriginal Motif Original Motif Backward 2 12 0.0173124 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: HBBBCCGCCCCWHHHV ---BCCSHCCCSCMG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondaryOriginal Motif Original Motif Backward 2 12 0.0193295 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH ----BCCSHCCCSCMG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primaryOriginal Motif Original Motif Forward 2 12 0.0214278 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB -BCCSHCCCSCMG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Reverse Complement Backward 7 12 0.0230163 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK ----CYGSGGGHSGGB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 82 Motif name: C082 Consensus sequence (original motif): WKAAARAAARAAW Consensus sequence (reverse complement motif): WTTKTTTMTTTYW ************************************************************************ Best Matches for Motif ID 82 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Forward 3 13 0.0105695 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH --WKAAARAAARAAW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00028 Tcfap2e_secondaryReverse Complement Reverse Complement Backward 1 13 0.0217842 Species: Mus musculus Consensus sequence (original motif): HDCDBRAAAAAADD Consensus sequence (reverse complement motif): DDTTTTTTMBDGDH Alignment: DDTTTTTTMBDGDH -WTTKTTTMTTTYW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primaryReverse Complement Reverse Complement Backward 1 13 0.0234988 Species: Mus musculus Consensus sequence (original motif): HDYAAAHAAMAADHD Consensus sequence (reverse complement motif): HHHTTRTTDTTTKDH Alignment: HHHTTRTTDTTTKDH --WTTKTTTMTTTYW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondaryReverse Complement Reverse Complement Backward 4 13 0.0265681 Species: Mus musculus Consensus sequence (original motif): DBTHHAAAAAAAAVHDH Consensus sequence (reverse complement motif): DDHBTTTTTTTTHDAVH Alignment: DDHBTTTTTTTTHDAVH -WTTKTTTMTTTYW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_secondaryReverse Complement Reverse Complement Forward 1 13 0.0267248 Species: Mus musculus Consensus sequence (original motif): HDATAHDAAAHADV Consensus sequence (reverse complement motif): VDTHTTTHHTATDH Alignment: VDTHTTTHHTATDH WTTKTTTMTTTYW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 83 Motif name: C083 Consensus sequence (original motif): CKBCCTSYRSCTCMMG Consensus sequence (reverse complement motif): CYRGAGSMKSAGGBRG ************************************************************************ Best Matches for Motif ID 83 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondaryOriginal Motif Reverse Complement Backward 5 16 0.0269608 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV --CKBCCTSYRSCTCMMG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondaryOriginal Motif Original Motif Backward 1 16 0.0336468 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: HBBBCCGCCCCWHHHV CKBCCTSYRSCTCMMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Backward 6 16 0.0351892 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH -CKBCCTSYRSCTCMMG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondaryReverse Complement Reverse Complement Backward 1 16 0.035551 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: HVDVGGGHGGGGDBHB CYRGAGSMKSAGGBRG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondaryOriginal Motif Original Motif Backward 1 16 0.035682 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH -CKBCCTSYRSCTCMMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 84 Motif name: C084 Consensus sequence (original motif): SCTGCMKCTGCVB Consensus sequence (reverse complement motif): VVGCAGYRGCAGS ************************************************************************ Best Matches for Motif ID 84 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Reverse Complement Reverse Complement Forward 4 13 0.0229768 Species: Mus musculus Consensus sequence (original motif): BBYVVCAGCTGCBVHHD Consensus sequence (reverse complement motif): HHDVVGCAGCTGVBKVB Alignment: HHDVVGCAGCTGVBKVB ---VVGCAGYRGCAGS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_secondaryOriginal Motif Reverse Complement Forward 1 13 0.0256725 Species: Mus musculus Consensus sequence (original motif): VVVRACAGVCBCDCC Consensus sequence (reverse complement motif): GGDGBGVCTGTKVVB Alignment: VVVRACAGVCBCDCC SCTGCMKCTGCVB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_secondaryOriginal Motif Original Motif Forward 1 13 0.0310274 Species: Mus musculus Consensus sequence (original motif): CYDBYWTCCSMHBVVH Consensus sequence (reverse complement motif): DBVVDRSGGAWKVHKG Alignment: CYDBYWTCCSMHBVVH SCTGCMKCTGCVB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondaryOriginal Motif Original Motif Forward 5 13 0.0325376 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH ----SCTGCMKCTGCVB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_secondaryReverse Complement Original Motif Backward 1 13 0.0348713 Species: Mus musculus Consensus sequence (original motif): BHDCVCAGCAGGHVD Consensus sequence (reverse complement motif): DVHCCTGCTGBGDDB Alignment: BHDCVCAGCAGGHVD --VVGCAGYRGCAGS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 85 Motif name: C085 Consensus sequence (original motif): VSGRSBHAGARDVSGRS Consensus sequence (reverse complement motif): SKCSVHMTCTDBSKCSV ************************************************************************ Best Matches for Motif ID 85 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Original Motif Forward 5 17 0.0345982 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ----SKCSVHMTCTDBSKCSV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Reverse Complement Original Motif Backward 1 17 0.0368478 Species: Mus musculus Consensus sequence (original motif): BBYVVCAGCTGCBVHHD Consensus sequence (reverse complement motif): HHDVVGCAGCTGVBKVB Alignment: BBYVVCAGCTGCBVHHD SKCSVHMTCTDBSKCSV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Reverse Complement Backward 1 17 0.0387638 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV ------VSGRSBHAGARDVSGRS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryReverse Complement Original Motif Backward 3 17 0.0394694 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB ---SKCSVHMTCTDBSKCSV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00016 Sry_secondary Original Motif Original Motif Backward 1 17 0.0403194 Species: Mus musculus Consensus sequence (original motif): HHDHDRAACAATDDVHV Consensus sequence (reverse complement motif): VHVHDATTGTTMHDDDH Alignment: HHDHDRAACAATDDVHV VSGRSBHAGARDVSGRS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 86 Motif name: C086 Consensus sequence (original motif): CSGGAGKCWGMGGSASG Consensus sequence (reverse complement motif): CSTSCCYCWGRCTCCSG ************************************************************************ Best Matches for Motif ID 86 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryReverse Complement Original Motif Forward 5 17 0.0432994 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH ----CSTSCCYCWGRCTCCSG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Reverse Complement Backward 5 17 0.0456174 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK -CSGGAGKCWGMGGSASG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Reverse Complement Forward 5 17 0.0460804 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH ----CSTSCCYCWGRCTCCSG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondaryOriginal Motif Original Motif Backward 2 17 0.052654 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV ----CSGGAGKCWGMGGSASG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryOriginal Motif Reverse Complement Backward 3 17 0.0530373 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB ----CSGGAGKCWGMGGSASG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 87 Motif name: C087 Consensus sequence (original motif): WRGACCRSSYTGGCYW Consensus sequence (reverse complement motif): WKGCCAMSSKGGTCKW ************************************************************************ Best Matches for Motif ID 87 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondaryReverse Complement Original Motif Forward 3 16 0.0240508 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB --WKGCCAMSSKGGTCKW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Reverse Complement Forward 6 16 0.0273083 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH -----WKGCCAMSSKGGTCKW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondaryOriginal Motif Reverse Complement Backward 1 16 0.0299939 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH ------WRGACCRSSYTGGCYW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryOriginal Motif Original Motif Forward 6 16 0.0316295 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB -----WRGACCRSSYTGGCYW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryOriginal Motif Reverse Complement Forward 6 16 0.031888 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB -----WRGACCRSSYTGGCYW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 88 Motif name: C088 Consensus sequence (original motif): SKCACTCWGTAGAMS Consensus sequence (reverse complement motif): SYTCTACWGAGTGYS ************************************************************************ Best Matches for Motif ID 88 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00201 Emx2 Reverse Complement Original Motif Backward 2 15 0.028571 Species: Mus musculus Consensus sequence (original motif): WVVVCTAATTAGYBGHB Consensus sequence (reverse complement motif): BHCBMCTAATTAGBVVW Alignment: WVVVCTAATTAGYBGHB -SYTCTACWGAGTGYS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00123 Hlxb9 Reverse Complement Original Motif Forward 1 15 0.0306813 Species: Mus musculus Consensus sequence (original motif): BBASTAATTAGTGVHV Consensus sequence (reverse complement motif): VDVCACTAATTASTVB Alignment: BBASTAATTAGTGVHV SYTCTACWGAGTGYS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00162 Evx1 Reverse Complement Original Motif Backward 2 15 0.0319373 Species: Mus musculus Consensus sequence (original motif): WVHVCTAATTAGYBVDV Consensus sequence (reverse complement motif): VDVBMCTAATTAGBHVW Alignment: WVHVCTAATTAGYBVDV -SYTCTACWGAGTGYS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00132 Evx2 Reverse Complement Reverse Complement Backward 2 15 0.0320303 Species: Mus musculus Consensus sequence (original motif): BVCMGCTAATTAGCBKW Consensus sequence (reverse complement motif): WRBGCTAATTAGCRGBB Alignment: WRBGCTAATTAGCRGBB -SYTCTACWGAGTGYS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00116 Rhox6 Reverse Complement Original Motif Forward 2 15 0.0322217 Species: Mus musculus Consensus sequence (original motif): WVHVYTAATTARTBSDH Consensus sequence (reverse complement motif): DDSBAKTAATTAMVDVW Alignment: WVHVYTAATTARTBSDH -SYTCTACWGAGTGYS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 89 Motif name: C089 Consensus sequence (original motif): YKCACTMYRDAGRCMR Consensus sequence (reverse complement motif): MRGKCTDMKYAGTGRK ************************************************************************ Best Matches for Motif ID 89 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00132 Evx2 Reverse Complement Reverse Complement Forward 1 16 0.0412748 Species: Mus musculus Consensus sequence (original motif): BVCMGCTAATTAGCBKW Consensus sequence (reverse complement motif): WRBGCTAATTAGCRGBB Alignment: WRBGCTAATTAGCRGBB MRGKCTDMKYAGTGRK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00131 Gbx2 Reverse Complement Reverse Complement Forward 2 16 0.0424502 Species: Mus musculus Consensus sequence (original motif): DVVRCTAATTAGYVDBD Consensus sequence (reverse complement motif): DVDVKCTAATTAGMVVD Alignment: DVDVKCTAATTAGMVVD -MRGKCTDMKYAGTGRK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00201 Emx2 Reverse Complement Original Motif Backward 2 16 0.0439615 Species: Mus musculus Consensus sequence (original motif): WVVVCTAATTAGYBGHB Consensus sequence (reverse complement motif): BHCBMCTAATTAGBVVW Alignment: WVVVCTAATTAGYBGHB MRGKCTDMKYAGTGRK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00184 Lhx8 Reverse Complement Original Motif Forward 1 16 0.0454659 Species: Mus musculus Consensus sequence (original motif): HVVVCTAATTAGCDDTG Consensus sequence (reverse complement motif): CAHHGCTAATTAGVVVH Alignment: CAHHGCTAATTAGVVVH MRGKCTDMKYAGTGRK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_secondaryOriginal Motif Reverse Complement Forward 1 16 0.0461544 Species: Mus musculus Consensus sequence (original motif): DGVBCRACGTYGTYHH Consensus sequence (reverse complement motif): HHMACKACGTMGBVCD Alignment: DGVBCRACGTYGTYHH YKCACTMYRDAGRCMR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 90 Motif name: C090 Consensus sequence (original motif): WAAWWAAADWWWAW Consensus sequence (reverse complement motif): WTWWWDTTTWWTTW ************************************************************************ Best Matches for Motif ID 90 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondaryReverse Complement Reverse Complement Forward 1 14 0.0393475 Species: Mus musculus Consensus sequence (original motif): DBTHHAAAAAAAAVHDH Consensus sequence (reverse complement motif): DDHBTTTTTTTTHDAVH Alignment: DDHBTTTTTTTTHDAVH WTWWWDTTTWWTTW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Original Motif Original Motif Forward 1 14 0.0396489 Species: Mus musculus Consensus sequence (original motif): HARTHAATTAWTAVDHD Consensus sequence (reverse complement motif): DHDBTAWTAATTHAKTH Alignment: HARTHAATTAWTAVDHD WAAWWAAADWWWAW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Reverse Complement Reverse Complement Forward 1 14 0.0396638 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: HHVBYTTTTTTTTDDVV WTWWWDTTTWWTTW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_secondaryReverse Complement Reverse Complement Forward 1 14 0.0432915 Species: Mus musculus Consensus sequence (original motif): HDATAHDAAAHADV Consensus sequence (reverse complement motif): VDTHTTTHHTATDH Alignment: VDTHTTTHHTATDH WTWWWDTTTWWTTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondaryReverse Complement Reverse Complement Forward 2 14 0.0464108 Species: Mus musculus Consensus sequence (original motif): ADDDYAWAACAAMAHH Consensus sequence (reverse complement motif): HDTYTTGTTWTKDDDT Alignment: HDTYTTGTTWTKDDDT -WTWWWDTTTWWTTW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 91 Motif name: C091 Consensus sequence (original motif): KMACTCAMKYTGTAKM Consensus sequence (reverse complement motif): YRTACAMRYTGAGTYY ************************************************************************ Best Matches for Motif ID 91 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondaryReverse Complement Original Motif Backward 4 16 0.0271799 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT ----YRTACAMRYTGAGTYY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondaryReverse Complement Original Motif Forward 1 16 0.0333934 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH YRTACAMRYTGAGTYY------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_primary Original Motif Original Motif Forward 1 16 0.0347276 Species: Mus musculus Consensus sequence (original motif): HADTBVADGATGCATCMTGMVHB Consensus sequence (reverse complement motif): VHVRCAYGATGCATCDTVVADTH Alignment: HADTBVADGATGCATCMTGMVHB KMACTCAMKYTGTAKM------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryReverse Complement Reverse Complement Backward 5 16 0.0370054 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC --YRTACAMRYTGAGTYY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Original Motif Reverse Complement Backward 1 16 0.0386898 Species: Mus musculus Consensus sequence (original motif): BVABCCACTTGAMHTT Consensus sequence (reverse complement motif): AAHYTCAAGTGGBTBV Alignment: BVABCCACTTGAMHTT KMACTCAMKYTGTAKM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 92 Motif name: C092 Consensus sequence (original motif): RYCAGRSTGGCSYCGARY Consensus sequence (reverse complement motif): KKTCGMSGCCASKCTGMM ************************************************************************ Best Matches for Motif ID 92 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Original Motif Backward 1 18 0.0336539 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB -----RYCAGRSTGGCSYCGARY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primaryOriginal Motif Reverse Complement Backward 3 18 0.0406327 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH --RYCAGRSTGGCSYCGARY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Reverse Complement Forward 5 18 0.0436535 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK ----RYCAGRSTGGCSYCGARY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryOriginal Motif Original Motif Backward 2 18 0.0459987 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH ----RYCAGRSTGGCSYCGARY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryOriginal Motif Reverse Complement Forward 5 18 0.0476871 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BTBVTCVTGGGTGGTCMVVDVBB ----RYCAGRSTGGCSYCGARY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 93 Motif name: C093 Consensus sequence (original motif): AKCCASMBSCCKSTGCMT Consensus sequence (reverse complement motif): ARGCASYGGSVYSTGGYT ************************************************************************ Best Matches for Motif ID 93 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Original Motif Forward 1 18 0.0389257 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV AKCCASMBSCCKSTGCMT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Original Motif Forward 4 18 0.0409936 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH ---AKCCASMBSCCKSTGCMT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Forward 3 18 0.0442874 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH --AKCCASMBSCCKSTGCMT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondaryReverse Complement Original Motif Forward 1 18 0.0446823 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB ARGCASYGGSVYSTGGYT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Original Motif Backward 2 18 0.0463423 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: WHVBVVMACGCGCGTCDYHWDH ---ARGCASYGGSVYSTGGYT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 94 Motif name: C094 Consensus sequence (original motif): SSHCCCSGCCCCSG Consensus sequence (reverse complement motif): CSGGGGCSGGGDSS ************************************************************************ Best Matches for Motif ID 94 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondaryOriginal Motif Original Motif Backward 4 14 0.0170835 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH SSHCCCSGCCCCSG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Forward 4 14 0.0203409 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ---SSHCCCSGCCCCSG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondaryReverse Complement Reverse Complement Forward 2 14 0.0229345 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: HVDVGGGHGGGGDBHB -CSGGGGCSGGGDSS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Reverse Complement Reverse Complement Backward 2 14 0.0239192 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: DHHDGGGCGRGGKHBH -CSGGGGCSGGGDSS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primaryOriginal Motif Original Motif Forward 2 14 0.0245603 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB -SSHCCCSGCCCCSG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 95 Motif name: C095 Consensus sequence (original motif): KCCAKMSTGGTSKMCAGM Consensus sequence (reverse complement motif): RCTGYYSACCASYYTGGY ************************************************************************ Best Matches for Motif ID 95 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondaryReverse Complement Reverse Complement Forward 1 18 0.0278633 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH RCTGYYSACCASYYTGGY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Original Motif Forward 1 18 0.0281669 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK RCTGYYSACCASYYTGGY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Reverse Complement Backward 2 18 0.033095 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH ----RCTGYYSACCASYYTGGY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Reverse Complement Forward 6 18 0.036897 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV -----KCCAKMSTGGTSKMCAGM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryReverse Complement Reverse Complement Backward 5 18 0.0379359 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB -RCTGYYSACCASYYTGGY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 96 Motif name: C096 Consensus sequence (original motif): MRMCMYGSCYRGCCYK Consensus sequence (reverse complement motif): RKGGCMMGSCKRGRKY ************************************************************************ Best Matches for Motif ID 96 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryReverse Complement Reverse Complement Backward 3 16 0.0346607 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB -----RKGGCMMGSCKRGRKY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondaryOriginal Motif Original Motif Backward 1 16 0.0356309 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH -MRMCMYGSCYRGCCYK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Reverse Complement Backward 5 16 0.0379898 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK --MRMCMYGSCYRGCCYK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondaryOriginal Motif Original Motif Forward 2 16 0.0407626 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB -MRMCMYGSCYRGCCYK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_secondaryReverse Complement Original Motif Backward 1 16 0.0416066 Species: Mus musculus Consensus sequence (original motif): DDDTWCCCCCCGGDRVH Consensus sequence (reverse complement motif): HVKDCCGGGGGGWADDD Alignment: DDDTWCCCCCCGGDRVH -RKGGCMMGSCKRGRKY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 97 Motif name: C097 Consensus sequence (original motif): WBAASWWAAAAWWSAAVW Consensus sequence (reverse complement motif): WVTTSWWTTTTWWSTTBW ************************************************************************ Best Matches for Motif ID 97 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Reverse Complement Backward 2 18 0.032986 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH ---WVTTSWWTTTTWWSTTBW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Backward 5 18 0.0395253 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV WVTTSWWTTTTWWSTTBW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondaryOriginal Motif Reverse Complement Backward 1 18 0.0483356 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HHHBBMGATAVHATCWVVDHVH ----WBAASWWAAAAWWSAAVW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryOriginal Motif Reverse Complement Forward 5 18 0.0488925 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC ----WBAASWWAAAAWWSAAVW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondaryOriginal Motif Original Motif Forward 2 18 0.0549213 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: MWSMBAARRATGCDCABHATGD -WBAASWWAAAAWWSAAVW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 98 Motif name: C098 Consensus sequence (original motif): AAAAWWAMAAWWAAWH Consensus sequence (reverse complement motif): HWTTWWTTYTWWTTTT ************************************************************************ Best Matches for Motif ID 98 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Backward 1 16 0.0386561 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH -AAAAWWAMAAWWAAWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00051 Sox8_primary Original Motif Reverse Complement Forward 1 16 0.0410043 Species: Mus musculus Consensus sequence (original motif): DDATBWATTGTTHHDDD Consensus sequence (reverse complement motif): DDDHDAACAATWBATDD Alignment: DDDHDAACAATWBATDD AAAAWWAMAAWWAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondaryOriginal Motif Original Motif Forward 1 16 0.0419783 Species: Mus musculus Consensus sequence (original motif): DBTHHAAAAAAAAVHDH Consensus sequence (reverse complement motif): DDHBTTTTTTTTHDAVH Alignment: DBTHHAAAAAAAAVHDH AAAAWWAMAAWWAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Original Motif Original Motif Forward 1 16 0.0419915 Species: Mus musculus Consensus sequence (original motif): HARTHAATTAWTAVDHD Consensus sequence (reverse complement motif): DHDBTAWTAATTHAKTH Alignment: HARTHAATTAWTAVDHD AAAAWWAMAAWWAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Backward 5 16 0.0430251 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW --AAAAWWAMAAWWAAWH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 99 Motif name: C099 Consensus sequence (original motif): MYCCCMGCACTCKGGARK Consensus sequence (reverse complement motif): RKTCCRGAGTGCYGGGKR ************************************************************************ Best Matches for Motif ID 99 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryReverse Complement Reverse Complement Forward 4 18 0.0318658 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV ---RKTCCRGAGTGCYGGGKR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Backward 1 18 0.0366211 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ----MYCCCMGCACTCKGGARK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondaryOriginal Motif Reverse Complement Forward 3 18 0.0404912 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: BDVBCDACGCKCGCGTBHRKHD --MYCCCMGCACTCKGGARK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondaryOriginal Motif Original Motif Forward 4 18 0.0438598 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH ---MYCCCMGCACTCKGGARK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Backward 3 18 0.0443498 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB ---RKTCCRGAGTGCYGGGKR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 100 Motif name: C100 Consensus sequence (original motif): WDWCSCTGTSTCHW Consensus sequence (reverse complement motif): WHGASACAGSGWDW ************************************************************************ Best Matches for Motif ID 100 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_secondaryOriginal Motif Original Motif Backward 2 14 0.0211347 Species: Mus musculus Consensus sequence (original motif): CHVTCACTGGBADHDD Consensus sequence (reverse complement motif): DDHHTBCCAGTGABHG Alignment: CHVTCACTGGBADHDD -WDWCSCTGTSTCHW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondaryOriginal Motif Reverse Complement Forward 2 14 0.0255389 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: HDTMCTTTGTSTVDBB -WDWCSCTGTSTCHW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00210 Mrg2 Reverse Complement Reverse Complement Backward 2 14 0.0263585 Species: Mus musculus Consensus sequence (original motif): DADBASCTGTCAAHVH Consensus sequence (reverse complement motif): DBHTTGACAGSTVDTD Alignment: DBHTTGACAGSTVDTD -WHGASACAGSGWDW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryReverse Complement Original Motif Forward 10 14 0.0316143 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: VCTBHBVCTTGGWTACVVVVVDB ---------WHGASACAGSGWDW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00186 Meis1 Reverse Complement Reverse Complement Backward 2 14 0.0316571 Species: Mus musculus Consensus sequence (original motif): WAVBASCTGTCAAWVH Consensus sequence (reverse complement motif): DBWTTGACAGSTBVTW Alignment: DBWTTGACAGSTBVTW -WHGASACAGSGWDW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 101 Motif name: C101 Consensus sequence (original motif): YTSCCTSKSVSTCCCAR Consensus sequence (reverse complement motif): MTGGGASVSYSAGGSAK ************************************************************************ Best Matches for Motif ID 101 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondaryReverse Complement Original Motif Backward 3 17 0.0379768 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV ---MTGGGASVSYSAGGSAK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Backward 6 17 0.043481 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB -MTGGGASVSYSAGGSAK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Backward 1 17 0.0446789 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH -----YTSCCTSKSVSTCCCAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondaryOriginal Motif Original Motif Backward 4 17 0.0447452 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB --YTSCCTSKSVSTCCCAR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Original Motif Forward 2 17 0.0464938 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV -MTGGGASVSYSAGGSAK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 102 Motif name: C102 Consensus sequence (original motif): SCMCCSSSVCCMSS Consensus sequence (reverse complement motif): SSRGGVSSSGGYGS ************************************************************************ Best Matches for Motif ID 102 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primaryOriginal Motif Original Motif Forward 2 14 0.0109986 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC -SCMCCSSSVCCMSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Backward 7 14 0.0204348 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH --SCMCCSSSVCCMSS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondaryOriginal Motif Reverse Complement Backward 1 14 0.0214073 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH --------SCMCCSSSVCCMSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Backward 2 14 0.0236835 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH --------SCMCCSSSVCCMSS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primaryOriginal Motif Original Motif Forward 1 14 0.024744 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB SCMCCSSSVCCMSS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 103 Motif name: C103 Consensus sequence (original motif): RRAGRAACCYTGYY Consensus sequence (reverse complement motif): MMCAMGGTTKCTKM ************************************************************************ Best Matches for Motif ID 103 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Reverse Complement Reverse Complement Backward 9 14 0.0387119 Species: Mus musculus Consensus sequence (original motif): HDTBHHCCHTAGCAACVVDHHHH Consensus sequence (reverse complement motif): HHHHDVVGTTGCTAHGGDHBAHH Alignment: HHHHDVVGTTGCTAHGGDHBAHH -MMCAMGGTTKCTKM-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_primary Original Motif Original Motif Forward 1 14 0.0405304 Species: Mus musculus Consensus sequence (original motif): VVDBAACAGBTGBYHB Consensus sequence (reverse complement motif): BDKVCABCTGTTBDBV Alignment: VVDBAACAGBTGBYHB RRAGRAACCYTGYY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryOriginal Motif Reverse Complement Forward 5 14 0.0407907 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB ----RRAGRAACCYTGYY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00056 Rfx4_secondaryReverse Complement Original Motif Backward 1 14 0.0414662 Species: Mus musculus Consensus sequence (original motif): HHBCHTRGWTACVVH Consensus sequence (reverse complement motif): HVVGTAWCKADGBHH Alignment: HVVGTAWCKADGBHH -MMCAMGGTTKCTKM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondaryReverse Complement Original Motif Backward 6 14 0.0421016 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB ---MMCAMGGTTKCTKM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 104 Motif name: C104 Consensus sequence (original motif): SSCCYCCCCDCCSS Consensus sequence (reverse complement motif): SSGGHGGGGKGGSS ************************************************************************ Best Matches for Motif ID 104 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Forward 5 14 0.0212662 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ----SSCCYCCCCDCCSS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primaryReverse Complement Reverse Complement Forward 1 14 0.0241093 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: BHHDYGGGGGGGGBVD SSGGHGGGGKGGSS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primaryOriginal Motif Original Motif Backward 2 14 0.0261421 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC SSCCYCCCCDCCSS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondaryOriginal Motif Original Motif Forward 3 14 0.0264558 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: HBBBCCGCCCCWHHHV --SSCCYCCCCDCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Forward 8 14 0.0275752 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH -------SSCCYCCCCDCCSS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 105 Motif name: C105 Consensus sequence (original motif): TGCCKMBSCCKMCCVA Consensus sequence (reverse complement motif): TVGGRYGGSBRRGGCA ************************************************************************ Best Matches for Motif ID 105 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Forward 2 16 0.0398676 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB -TVGGRYGGSBRRGGCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Reverse Complement Forward 3 16 0.0413056 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK --TVGGRYGGSBRRGGCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryReverse Complement Reverse Complement Backward 2 16 0.0445913 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV ------TVGGRYGGSBRRGGCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Original Motif Forward 2 16 0.0479431 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV -TGCCKMBSCCKMCCVA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondaryReverse Complement Reverse Complement Backward 2 16 0.0484323 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: BHBHDTGGCGGGGBDHD TVGGRYGGSBRRGGCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 106 Motif name: C106 Consensus sequence (original motif): MSGCAGWGGCASK Consensus sequence (reverse complement motif): RSTGCCWCTGCSY ************************************************************************ Best Matches for Motif ID 106 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Reverse Complement Original Motif Forward 1 13 0.0221156 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: BBBAVTGCAGTGBBVDD RSTGCCWCTGCSY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_secondaryReverse Complement Reverse Complement Backward 3 13 0.026668 Species: Mus musculus Consensus sequence (original motif): DTWGCCKSMGGCRHH Consensus sequence (reverse complement motif): HHKGCCYSRGGCWAD Alignment: HHKGCCYSRGGCWAD RSTGCCWCTGCSY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondaryOriginal Motif Original Motif Backward 2 13 0.0273606 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV --------MSGCAGWGGCASK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_secondaryReverse Complement Reverse Complement Forward 3 13 0.0282689 Species: Mus musculus Consensus sequence (original motif): CHVTCACTGGBADHDD Consensus sequence (reverse complement motif): DDHHTBCCAGTGABHG Alignment: DDHHTBCCAGTGABHG --RSTGCCWCTGCSY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_secondaryReverse Complement Reverse Complement Backward 3 13 0.0289018 Species: Mus musculus Consensus sequence (original motif): VVVRACAGVCBCDCC Consensus sequence (reverse complement motif): GGDGBGVCTGTKVVB Alignment: GGDGBGVCTGTKVVB RSTGCCWCTGCSY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 107 Motif name: C107 Consensus sequence (original motif): CHBBCCTYBAABCCCDG Consensus sequence (reverse complement motif): CDGGGBTTVMAGGVBHG ************************************************************************ Best Matches for Motif ID 107 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Reverse Complement Backward 5 17 0.0580885 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK -CDGGGBTTVMAGGVBHG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondaryOriginal Motif Original Motif Forward 1 17 0.0584165 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH CHBBCCTYBAABCCCDG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryOriginal Motif Original Motif Backward 5 17 0.0604761 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: VCTBHBVCTTGGWTACVVVVVDB --CHBBCCTYBAABCCCDG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Backward 3 17 0.0618639 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH ----CHBBCCTYBAABCCCDG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Original Motif Forward 5 17 0.0669075 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH ----CHBBCCTYBAABCCCDG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 108 Motif name: C108 Consensus sequence (original motif): RBACWGASAWASVY Consensus sequence (reverse complement motif): MVSTWTSTCWGTBK ************************************************************************ Best Matches for Motif ID 108 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondaryReverse Complement Reverse Complement Backward 1 14 0.0263171 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: HDTMCTTTGTSTVDBB --MVSTWTSTCWGTBK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00018 Irf4_secondaryReverse Complement Original Motif Forward 1 14 0.0315601 Species: Mus musculus Consensus sequence (original motif): VVBAYTCTCGGWHDB Consensus sequence (reverse complement motif): BHHWCCGAGAMTVVB Alignment: VVBAYTCTCGGWHDB MVSTWTSTCWGTBK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score >UP00011 Irf6_secondaryOriginal Motif Reverse Complement Backward 1 14 0.0320561 Species: Mus musculus Consensus sequence (original motif): VBBACTCYCGGKHDV Consensus sequence (reverse complement motif): VDDRCCGMGAGTBBB Alignment: VDDRCCGMGAGTBBB -RBACWGASAWASVY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_secondaryOriginal Motif Original Motif Backward 1 14 0.0348659 Species: Mus musculus Consensus sequence (original motif): VVDAATAACAAAVVB Consensus sequence (reverse complement motif): BVVTTTGTTATTDBB Alignment: VVDAATAACAAAVVB -RBACWGASAWASVY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Reverse Complement Reverse Complement Backward 4 14 0.0352792 Species: Mus musculus Consensus sequence (original motif): HDHDDCCAGACABBHVH Consensus sequence (reverse complement motif): HVHBVTGTCTGGDDHDD Alignment: HVHBVTGTCTGGDDHDD MVSTWTSTCWGTBK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 109 Motif name: C109 Consensus sequence (original motif): RMCWSGCTGSCCKY Consensus sequence (reverse complement motif): MRGGSCAGCSWGRK ************************************************************************ Best Matches for Motif ID 109 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_secondaryReverse Complement Original Motif Backward 2 14 0.0232278 Species: Mus musculus Consensus sequence (original motif): DDDCACAGCAKGHVD Consensus sequence (reverse complement motif): DVHCYTGCTGTGHDH Alignment: DDDCACAGCAKGHVD MRGGSCAGCSWGRK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Reverse Complement Backward 6 14 0.0232672 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH ----MRGGSCAGCSWGRK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondaryOriginal Motif Reverse Complement Forward 4 14 0.0233983 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: VBBDMYCATCTGVHHBH ---RMCWSGCTGSCCKY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primaryReverse Complement Original Motif Backward 3 14 0.0243539 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: HTBVVVDGGACCACCCRGRDBG ------MRGGSCAGCSWGRK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondaryReverse Complement Original Motif Backward 2 14 0.024667 Species: Mus musculus Consensus sequence (original motif): HHDCVCAGCAKGVVD Consensus sequence (reverse complement motif): DVBCYTGCTGBGDDD Alignment: HHDCVCAGCAKGVVD MRGGSCAGCSWGRK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 110 Motif name: C110 Consensus sequence (original motif): YYCTKTCTCMAARR Consensus sequence (reverse complement motif): KKTTRGAGAYAGKM ************************************************************************ Best Matches for Motif ID 110 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Original Motif Forward 2 14 0.030626 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: BDHDDADAGATAAGADHBDHVD -KKTTRGAGAYAGKM------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_primary Original Motif Reverse Complement Backward 2 14 0.0328671 Species: Mus musculus Consensus sequence (original motif): DCTTTCKAGGAATHHV Consensus sequence (reverse complement motif): VHHATTCCTYGAAAGD Alignment: VHHATTCCTYGAAAGD -YYCTKTCTCMAARR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00076 Rfxdc2_secondaryReverse Complement Original Motif Forward 3 14 0.0362358 Species: Mus musculus Consensus sequence (original motif): BBVCDTRGAKACSVDDH Consensus sequence (reverse complement motif): HDDVSGTRTCMADGBVB Alignment: BBVCDTRGAKACSVDDH --KKTTRGAGAYAGKM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondaryOriginal Motif Reverse Complement Forward 3 14 0.0396775 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: HDTMCTTTGTSTVDBB --YYCTKTCTCMAARR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondaryReverse Complement Original Motif Forward 1 14 0.0396815 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH KKTTRGAGAYAGKM-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 111 Motif name: C111 Consensus sequence (original motif): TBATWYCTGARWTCSM Consensus sequence (reverse complement motif): YSGAWKTCAGMWATBA ************************************************************************ Best Matches for Motif ID 111 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Reverse Complement Reverse Complement Forward 1 16 0.0382144 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: DMTWDGTCAGCADWTTH YSGAWKTCAGMWATBA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00410 Elk1 Original Motif Original Motif Backward 2 16 0.0436521 Species: Mus musculus Consensus sequence (original motif): VVHBACCGGAAGTDBHD Consensus sequence (reverse complement motif): DHBDACTTCCGGTVHVB Alignment: VVHBACCGGAAGTDBHD TBATWYCTGARWTCSM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_primary Original Motif Original Motif Backward 2 16 0.0439267 Species: Mus musculus Consensus sequence (original motif): HVHHACCGGAAGTDHHV Consensus sequence (reverse complement motif): BHHHACTTCCGGTHHBD Alignment: HVHHACCGGAAGTDHHV TBATWYCTGARWTCSM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Original Motif Forward 5 16 0.0485736 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: BDHDDADAGATAAGADHBDHVD ----YSGAWKTCAGMWATBA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_1765.2 Reverse Complement Reverse Complement Backward 1 16 0.0486964 Species: Mus musculus Consensus sequence (original motif): AVDVCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGBHBT Alignment: WVVHWTWACAGCGBHBT -YSGAWKTCAGMWATBA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 112 Motif name: C112 Consensus sequence (original motif): CCBCYSSSGCCCCSS Consensus sequence (reverse complement motif): SSGGGGCSSSKGBGG ************************************************************************ Best Matches for Motif ID 112 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Backward 9 15 0.0368115 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB SSGGGGCSSSKGBGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Forward 3 15 0.038423 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH --CCBCYSSSGCCCCSS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondaryReverse Complement Reverse Complement Backward 1 15 0.0430481 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: HHHHDGGGGCGGDBHDV --SSGGGGCSSSKGBGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondaryOriginal Motif Original Motif Backward 2 15 0.0450061 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: BHVDCCCCDCCCBDBH CCBCYSSSGCCCCSS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primaryOriginal Motif Original Motif Forward 1 15 0.0460082 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB CCBCYSSSGCCCCSS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 113 Motif name: C113 Consensus sequence (original motif): CHCCSCSVSCCCC Consensus sequence (reverse complement motif): GGGGSVSGSGGDG ************************************************************************ Best Matches for Motif ID 113 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primaryOriginal Motif Original Motif Backward 2 13 0.0317901 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC -CHCCSCSVSCCCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Forward 2 13 0.0384426 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB -GGGGSVSGSGGDG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Reverse Complement Forward 1 13 0.0386858 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK GGGGSVSGSGGDG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondaryReverse Complement Reverse Complement Backward 11 13 0.0387928 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: DVVTTVGTGGGHGGYAMHWHHHY GGGGSVSGSGGDG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primaryOriginal Motif Original Motif Backward 1 13 0.0424015 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB ---CHCCSCSVSCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 114 Motif name: C114 Consensus sequence (original motif): SRARCCMKGTCTYS Consensus sequence (reverse complement motif): SMAGACRRGGMTKS ************************************************************************ Best Matches for Motif ID 114 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondaryOriginal Motif Original Motif Forward 1 14 0.0219685 Species: Mus musculus Consensus sequence (original motif): DDGMCCTBGTCCHYHV Consensus sequence (reverse complement motif): VHMDGGACVAGGRCDH Alignment: DDGMCCTBGTCCHYHV SRARCCMKGTCTYS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Reverse Complement Original Motif Forward 2 14 0.0320328 Species: Mus musculus Consensus sequence (original motif): BDWAGGCGTGBCHHD Consensus sequence (reverse complement motif): HHDGBCACGCCTWDB Alignment: BDWAGGCGTGBCHHD -SMAGACRRGGMTKS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Backward 3 14 0.0320453 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD SRARCCMKGTCTYS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondaryReverse Complement Original Motif Backward 2 14 0.0338574 Species: Mus musculus Consensus sequence (original motif): BBHBGAGTGGGAHHDB Consensus sequence (reverse complement motif): BHHDTCCCACTCBDBV Alignment: BBHBGAGTGGGAHHDB -SMAGACRRGGMTKS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_secondaryOriginal Motif Original Motif Backward 3 14 0.0350465 Species: Mus musculus Consensus sequence (original motif): VBVBCSGGGTCAVBBH Consensus sequence (reverse complement motif): HVBVTGACCCSGBVBV Alignment: VBVBCSGGGTCAVBBH SRARCCMKGTCTYS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 115 Motif name: C115 Consensus sequence (original motif): MDRGKGSTGGGHK Consensus sequence (reverse complement motif): RHCCCASCRCKDY ************************************************************************ Best Matches for Motif ID 115 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondaryOriginal Motif Reverse Complement Backward 3 13 0.0107043 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: HVDVGGGHGGGGDBHB -MDRGKGSTGGGHK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondaryOriginal Motif Reverse Complement Backward 2 13 0.0119418 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: BHHHWGGGGCGGBBVH --MDRGKGSTGGGHK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondaryReverse Complement Original Motif Backward 2 13 0.0142708 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB ---RHCCCASCRCKDY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondaryOriginal Motif Reverse Complement Backward 3 13 0.0145702 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: HHHHDGGGGCGGDBHDV --MDRGKGSTGGGHK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Original Motif Original Motif Backward 2 13 0.0200599 Species: Mus musculus Consensus sequence (original motif): BDWAGGCGTGBCHHD Consensus sequence (reverse complement motif): HHDGBCACGCCTWDB Alignment: BDWAGGCGTGBCHHD -MDRGKGSTGGGHK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 116 Motif name: C116 Consensus sequence (original motif): WWMAWACACWMAWW Consensus sequence (reverse complement motif): WWTRWGTGTWTRWW ************************************************************************ Best Matches for Motif ID 116 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_primary Original Motif Reverse Complement Forward 1 14 0.0242601 Species: Mus musculus Consensus sequence (original motif): HHDWTSAATGAATDDB Consensus sequence (reverse complement motif): VDHATTCATTSAWDDH Alignment: HHDWTSAATGAATDDB WWMAWACACWMAWW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Original Motif Forward 1 14 0.02629 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: DWAATRTAAACAAWVVB WWMAWACACWMAWW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryReverse Complement Original Motif Forward 7 14 0.0267723 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB ------WWTRWGTGTWTRWW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00228 Bapx1 Reverse Complement Reverse Complement Forward 4 14 0.0270117 Species: Mus musculus Consensus sequence (original motif): VHHAACCACTTAAVVAH Consensus sequence (reverse complement motif): DTBVTTAAGTGGTTHHV Alignment: DTBVTTAAGTGGTTHHV ---WWTRWGTGTWTRWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primaryOriginal Motif Original Motif Forward 1 14 0.0271642 Species: Mus musculus Consensus sequence (original motif): HDYAAAHAAMAADHD Consensus sequence (reverse complement motif): HHHTTRTTDTTTKDH Alignment: HDYAAAHAAMAADHD WWMAWACACWMAWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 117 Motif name: C117 Consensus sequence (original motif): CMCWRSCTGYCCKG Consensus sequence (reverse complement motif): CYGGKCAGSKWGYG ************************************************************************ Best Matches for Motif ID 117 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_secondaryReverse Complement Reverse Complement Backward 1 14 0.023372 Species: Mus musculus Consensus sequence (original motif): CHVTCACTGGBADHDD Consensus sequence (reverse complement motif): DDHHTBCCAGTGABHG Alignment: DDHHTBCCAGTGABHG --CYGGKCAGSKWGYG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00092 Myb_secondary Reverse Complement Reverse Complement Forward 2 14 0.0238724 Species: Mus musculus Consensus sequence (original motif): BDACCAACTGCCRBBH Consensus sequence (reverse complement motif): DBVKGGCAGTTGGTHB Alignment: DBVKGGCAGTTGGTHB -CYGGKCAGSKWGYG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondaryReverse Complement Original Motif Backward 2 14 0.0250247 Species: Mus musculus Consensus sequence (original motif): HHDCVCAGCAKGVVD Consensus sequence (reverse complement motif): DVBCYTGCTGBGDDD Alignment: HHDCVCAGCAKGVVD CYGGKCAGSKWGYG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00081 Mybl1_secondaryReverse Complement Reverse Complement Forward 1 14 0.0262709 Species: Mus musculus Consensus sequence (original motif): BBVCCAACTGCCGHB Consensus sequence (reverse complement motif): BHCGGCAGTTGGBBB Alignment: BHCGGCAGTTGGBBB CYGGKCAGSKWGYG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_secondaryOriginal Motif Reverse Complement Forward 2 14 0.0274658 Species: Mus musculus Consensus sequence (original motif): DDDCACAGCAKGHVD Consensus sequence (reverse complement motif): DVHCYTGCTGTGHDH Alignment: DVHCYTGCTGTGHDH -CMCWRSCTGYCCKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 118 Motif name: C118 Consensus sequence (original motif): GMCTGCSWSTGCCKC Consensus sequence (reverse complement motif): GRGGCASWSGCAGYC ************************************************************************ Best Matches for Motif ID 118 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Reverse Complement Backward 6 15 0.0439545 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ---GMCTGCSWSTGCCKC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondaryOriginal Motif Reverse Complement Backward 8 15 0.0446432 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV GMCTGCSWSTGCCKC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_secondaryOriginal Motif Reverse Complement Backward 1 15 0.0451734 Species: Mus musculus Consensus sequence (original motif): CHVTCACTGGBADHDD Consensus sequence (reverse complement motif): DDHHTBCCAGTGABHG Alignment: CHVTCACTGGBADHDD -GMCTGCSWSTGCCKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Forward 4 15 0.0458009 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH ---GMCTGCSWSTGCCKC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00414 Ets1 Reverse Complement Original Motif Backward 3 15 0.0501418 Species: Mus musculus Consensus sequence (original motif): BDDDHACCGGAARTVDD Consensus sequence (reverse complement motif): DDBAMTTCCGGTDHDHB Alignment: BDDDHACCGGAARTVDD GRGGCASWSGCAGYC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 119 Motif name: C119 Consensus sequence (original motif): SWRTYCCAGRACWS Consensus sequence (reverse complement motif): SWGTMCTGGKAKWS ************************************************************************ Best Matches for Motif ID 119 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_secondaryReverse Complement Original Motif Backward 2 14 0.0288751 Species: Mus musculus Consensus sequence (original motif): CHVTCACTGGBADHDD Consensus sequence (reverse complement motif): DDHHTBCCAGTGABHG Alignment: CHVTCACTGGBADHDD -SWGTMCTGGKAKWS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00040 Irf5_secondaryOriginal Motif Original Motif Backward 2 14 0.0294274 Species: Mus musculus Consensus sequence (original motif): BHDAHCGAGARTHBV Consensus sequence (reverse complement motif): VBHAKTCTCGHTHHV Alignment: BHDAHCGAGARTHBV SWRTYCCAGRACWS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00019 Zbtb12_primaryOriginal Motif Original Motif Backward 1 14 0.031753 Species: Mus musculus Consensus sequence (original motif): BDHRBGTTCTAGATCVB Consensus sequence (reverse complement motif): BBGATCTAGAACBKHDB Alignment: BDHRBGTTCTAGATCVB ---SWRTYCCAGRACWS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00018 Irf4_secondaryOriginal Motif Reverse Complement Backward 2 14 0.0323112 Species: Mus musculus Consensus sequence (original motif): VVBAYTCTCGGWHDB Consensus sequence (reverse complement motif): BHHWCCGAGAMTVVB Alignment: BHHWCCGAGAMTVVB SWRTYCCAGRACWS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00203 Pknox1 Original Motif Reverse Complement Backward 2 14 0.0328626 Species: Mus musculus Consensus sequence (original motif): DRVSASCTGTCAAWVV Consensus sequence (reverse complement motif): VVWTTGACAGSTSBKD Alignment: VVWTTGACAGSTSBKD -SWRTYCCAGRACWS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 120 Motif name: C120 Consensus sequence (original motif): TGARACMSKGTYTCA Consensus sequence (reverse complement motif): TGAMACRSYGTKTCA ************************************************************************ Best Matches for Motif ID 120 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryOriginal Motif Reverse Complement Forward 7 15 0.0456935 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB ------TGARACMSKGTYTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_secondaryReverse Complement Reverse Complement Backward 1 15 0.049534 Species: Mus musculus Consensus sequence (original motif): VVVRACAGVCBCDCC Consensus sequence (reverse complement motif): GGDGBGVCTGTKVVB Alignment: GGDGBGVCTGTKVVB TGAMACRSYGTKTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondaryReverse Complement Reverse Complement Forward 5 15 0.0503421 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH ----TGAMACRSYGTKTCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Forward 7 15 0.0525165 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ------TGARACMSKGTYTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00059 Arid5a_secondaryOriginal Motif Original Motif Backward 1 15 0.0539819 Species: Mus musculus Consensus sequence (original motif): BDYDVAATACGADDBVV Consensus sequence (reverse complement motif): BBVDDTCGTATTVDMHB Alignment: BDYDVAATACGADDBVV --TGARACMSKGTYTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 121 Motif name: C121 Consensus sequence (original motif): MRCCCTRGCYSTCCYK Consensus sequence (reverse complement motif): RKGGASMGCKAGGGMY ************************************************************************ Best Matches for Motif ID 121 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Original Motif Backward 5 16 0.0432795 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: WHVBVVMACGCGCGTCDYHWDH --RKGGASMGCKAGGGMY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Reverse Complement Backward 1 16 0.0435346 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK ------RKGGASMGCKAGGGMY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primaryOriginal Motif Reverse Complement Forward 2 16 0.043859 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH -MRCCCTRGCYSTCCYK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryOriginal Motif Original Motif Backward 5 16 0.0450464 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH ---MRCCCTRGCYSTCCYK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Original Motif Backward 1 16 0.0451554 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH -------RKGGASMGCKAGGGMY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 122 Motif name: C122 Consensus sequence (original motif): YAGCCCWGSCWSBCCTR Consensus sequence (reverse complement motif): MAGGVSWGSCWGGGCTK ************************************************************************ Best Matches for Motif ID 122 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Backward 7 17 0.0374003 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB MAGGVSWGSCWGGGCTK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Backward 3 17 0.0431179 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH ----YAGCCCWGSCWSBCCTR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primaryReverse Complement Reverse Complement Backward 7 17 0.0445547 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT MAGGVSWGSCWGGGCTK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Reverse Complement Forward 6 17 0.0459573 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK -----MAGGVSWGSCWGGGCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryOriginal Motif Original Motif Forward 3 17 0.0473282 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH --YAGCCCWGSCWSBCCTR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 123 Motif name: C123 Consensus sequence (original motif): GAAMTCWGAAATC Consensus sequence (reverse complement motif): GATTTCWGARTTC ************************************************************************ Best Matches for Motif ID 123 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00015 Ehf_secondary Reverse Complement Original Motif Forward 4 13 0.0397393 Species: Mus musculus Consensus sequence (original motif): WDVDABTTCCKAHSDW Consensus sequence (reverse complement motif): WDSHTYGGAAVTDVDW Alignment: WDVDABTTCCKAHSDW ---GATTTCWGARTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Original Motif Original Motif Forward 1 13 0.0411525 Species: Mus musculus Consensus sequence (original motif): BWAHSMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRSDTWV Alignment: BWAHSMGGAAGTWD GAAMTCWGAAATC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00015 Ehf_primary Original Motif Original Motif Forward 2 13 0.0417179 Species: Mus musculus Consensus sequence (original motif): VBDABCCGGAAGTDD Consensus sequence (reverse complement motif): DDACTTCCGGBTHBB Alignment: VBDABCCGGAAGTDD -GAAMTCWGAAATC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Reverse Complement Original Motif Forward 4 13 0.0418022 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGKWTH Consensus sequence (reverse complement motif): HAWYCCGGAAGTHBBD Alignment: DBBHACTTCCGGKWTH ---GATTTCWGARTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00418 Etv6 Original Motif Reverse Complement Backward 5 13 0.0418622 Species: Mus musculus Consensus sequence (original motif): DVHBTACTTCCGGHTHB Consensus sequence (reverse complement motif): BHAHCCGGAAGTABDVD Alignment: BHAHCCGGAAGTABDVD GAAMTCWGAAATC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 124 Motif name: C124 Consensus sequence (original motif): WSACSRSGCTGSYSTCSW Consensus sequence (reverse complement motif): WSGASKSCAGCSMSGTSW ************************************************************************ Best Matches for Motif ID 124 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Reverse Complement Backward 4 18 0.0329213 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH --WSGASKSCAGCSMSGTSW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondaryOriginal Motif Original Motif Backward 4 18 0.0329451 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: MWSMBAARRATGCDCABHATGD -WSACSRSGCTGSYSTCSW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondaryOriginal Motif Reverse Complement Backward 4 18 0.0351741 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: BDVBCDACGCKCGCGTBHRKHD -WSACSRSGCTGSYSTCSW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Original Motif Forward 3 18 0.0362523 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH --WSGASKSCAGCSMSGTSW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Original Motif Original Motif Backward 3 18 0.0378518 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: WHVBVVMACGCGCGTCDYHWDH --WSACSRSGCTGSYSTCSW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 125 Motif name: C125 Consensus sequence (original motif): SKASWYASAGRWASMS Consensus sequence (reverse complement motif): SYSTWKCTSTMWSTRS ************************************************************************ Best Matches for Motif ID 125 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryReverse Complement Original Motif Backward 6 16 0.0304657 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB -SYSTWKCTSTMWSTRS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00122 Tgif1 Reverse Complement Reverse Complement Forward 1 16 0.033763 Species: Mus musculus Consensus sequence (original motif): DABWWTGACAGCTVVBD Consensus sequence (reverse complement motif): DBVVAGCTGTCAWWVTH Alignment: DBVVAGCTGTCAWWVTH SYSTWKCTSTMWSTRS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00014 Sox17_secondaryOriginal Motif Original Motif Forward 1 16 0.0342041 Species: Mus musculus Consensus sequence (original motif): VHBHHCATTCATRHVDD Consensus sequence (reverse complement motif): DDBDKATGAATGHDBHV Alignment: VHBHHCATTCATRHVDD SKASWYASAGRWASMS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Forward 1 16 0.0346406 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH SKASWYASAGRWASMS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_primary Original Motif Reverse Complement Backward 1 16 0.0359108 Species: Mus musculus Consensus sequence (original motif): BHBBKKACGTMMVDBVB Consensus sequence (reverse complement motif): BVVDVRYACGTRYVBHB Alignment: BHBBKKACGTMMVDBVB -SKASWYASAGRWASMS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 126 Motif name: C126 Consensus sequence (original motif): SVWGRCSMKSCTGGYS Consensus sequence (reverse complement motif): SMCCAGSYYSGMCWBS ************************************************************************ Best Matches for Motif ID 126 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Reverse Complement Forward 1 16 0.0246313 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH SVWGRCSMKSCTGGYS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryReverse Complement Reverse Complement Backward 2 16 0.0257483 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH ------SMCCAGSYYSGMCWBS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondaryOriginal Motif Reverse Complement Forward 3 16 0.0279168 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH --SVWGRCSMKSCTGGYS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondaryOriginal Motif Reverse Complement Forward 6 16 0.0307173 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH -----SVWGRCSMKSCTGGYS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryOriginal Motif Reverse Complement Backward 4 16 0.0329173 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB ----SVWGRCSMKSCTGGYS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 127 Motif name: C127 Consensus sequence (original motif): CKCCYYTHATCCCMG Consensus sequence (reverse complement motif): CYGGGATHAMMGGRG ************************************************************************ Best Matches for Motif ID 127 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00219 Cutl1_3494.1 Reverse Complement Reverse Complement Backward 1 15 0.0320609 Species: Mus musculus Consensus sequence (original motif): ACCGVTTGATYAHSWBD Consensus sequence (reverse complement motif): DBWSDTKATCAAVCGGT Alignment: DBWSDTKATCAAVCGGT --CYGGGATHAMMGGRG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Reverse Complement Reverse Complement Forward 1 15 0.0338391 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD CYGGGATHAMMGGRG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00014 Sox17_secondaryReverse Complement Reverse Complement Backward 3 15 0.0345074 Species: Mus musculus Consensus sequence (original motif): VHBHHCATTCATRHVDD Consensus sequence (reverse complement motif): DDBDKATGAATGHDBHV Alignment: DDBDKATGAATGHDBHV CYGGGATHAMMGGRG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Reverse Complement Original Motif Forward 1 15 0.0345461 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: HHHKVCTTTGATSTHHH CYGGGATHAMMGGRG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primaryReverse Complement Reverse Complement Backward 3 15 0.0348977 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: BDDASATCAAAGGMDDD CYGGGATHAMMGGRG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 128 Motif name: C128 Consensus sequence (original motif): SYCTSRSTGTCSYSGARS Consensus sequence (reverse complement motif): SKTCSMSGACASKSAGMS ************************************************************************ Best Matches for Motif ID 128 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Original Motif Backward 1 18 0.0345039 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB -----SYCTSRSTGTCSYSGARS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Reverse Complement Backward 1 18 0.0355993 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK ----SYCTSRSTGTCSYSGARS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondaryOriginal Motif Original Motif Forward 6 18 0.040905 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: VCTBHBVCTTGGWTACVVVVVDB -----SYCTSRSTGTCSYSGARS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Reverse Complement Forward 6 18 0.0416039 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV -----SYCTSRSTGTCSYSGARS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondaryReverse Complement Original Motif Forward 1 18 0.0436679 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV SKTCSMSGACASKSAGMS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 129 Motif name: C129 Consensus sequence (original motif): KKGCTAYRYRGAGAMM Consensus sequence (reverse complement motif): RRTCTCKKMMTAGCRY ************************************************************************ Best Matches for Motif ID 129 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00131 Gbx2 Reverse Complement Reverse Complement Forward 1 16 0.0195892 Species: Mus musculus Consensus sequence (original motif): DVVRCTAATTAGYVDBD Consensus sequence (reverse complement motif): DVDVKCTAATTAGMVVD Alignment: DVDVKCTAATTAGMVVD RRTCTCKKMMTAGCRY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00136 Prrx2 Reverse Complement Reverse Complement Forward 1 16 0.0328703 Species: Mus musculus Consensus sequence (original motif): AVHGCTAATTAGYDDDD Consensus sequence (reverse complement motif): DDDHKCTAATTAGCHBT Alignment: DDDHKCTAATTAGCHBT RRTCTCKKMMTAGCRY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00132 Evx2 Reverse Complement Original Motif Backward 2 16 0.0356184 Species: Mus musculus Consensus sequence (original motif): BVCMGCTAATTAGCBKW Consensus sequence (reverse complement motif): WRBGCTAATTAGCRGBB Alignment: BVCMGCTAATTAGCBKW RRTCTCKKMMTAGCRY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00211 Pou3f3 Original Motif Reverse Complement Backward 1 16 0.0360591 Species: Mus musculus Consensus sequence (original motif): HADDTATGCATAATDDA Consensus sequence (reverse complement motif): TDDATTATGCATADDTH Alignment: HADDTATGCATAATDDA -KKGCTAYRYRGAGAMM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00178 Og2x Reverse Complement Reverse Complement Backward 2 16 0.0365623 Species: Mus musculus Consensus sequence (original motif): CGVVYYAATTRRBHDHB Consensus sequence (reverse complement motif): BHDHBMKAATTMKVVCG Alignment: BHDHBMKAATTMKVVCG RRTCTCKKMMTAGCRY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 130 Motif name: C130 Consensus sequence (original motif): TKCCWGGVCWGCMA Consensus sequence (reverse complement motif): TRGCWGBCCWGGYA ************************************************************************ Best Matches for Motif ID 130 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Backward 9 14 0.0417596 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH -TKCCWGGVCWGCMA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Reverse Complement Backward 4 14 0.0438533 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ------TKCCWGGVCWGCMA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Reverse Complement Original Motif Forward 1 14 0.0449212 Species: Mus musculus Consensus sequence (original motif): HDTBHHCCHTAGCAACVVDHHHH Consensus sequence (reverse complement motif): HHHHDVVGTTGCTAHGGDHBAHH Alignment: HHHHDVVGTTGCTAHGGDHBAHH TRGCWGBCCWGGYA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Reverse Complement Backward 2 14 0.0463369 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK -------TKCCWGGVCWGCMA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primaryReverse Complement Reverse Complement Forward 7 14 0.0472891 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT ------TRGCWGBCCWGGYA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 131 Motif name: C131 Consensus sequence (original motif): WWAADAARVHAAWW Consensus sequence (reverse complement motif): WWTTHBKTTDTTWW ************************************************************************ Best Matches for Motif ID 131 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Backward 2 14 0.0256716 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH --WWAADAARVHAAWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondaryReverse Complement Reverse Complement Backward 3 14 0.0279274 Species: Mus musculus Consensus sequence (original motif): ADDDYAWAACAAMAHH Consensus sequence (reverse complement motif): HDTYTTGTTWTKDDDT Alignment: HDTYTTGTTWTKDDDT WWTTHBKTTDTTWW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00028 Tcfap2e_secondaryOriginal Motif Original Motif Backward 1 14 0.0294273 Species: Mus musculus Consensus sequence (original motif): HDCDBRAAAAAADD Consensus sequence (reverse complement motif): DDTTTTTTMBDGDH Alignment: HDCDBRAAAAAADD WWAADAARVHAAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00014 Sox17_primary Reverse Complement Reverse Complement Forward 1 14 0.0331143 Species: Mus musculus Consensus sequence (original motif): VDDAACAATTVAWHD Consensus sequence (reverse complement motif): DDWTBAATTGTTDDB Alignment: DDWTBAATTGTTDDB WWTTHBKTTDTTWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primaryReverse Complement Reverse Complement Backward 1 14 0.0331856 Species: Mus musculus Consensus sequence (original motif): HDYAAAHAAMAADHD Consensus sequence (reverse complement motif): HHHTTRTTDTTTKDH Alignment: HHHTTRTTDTTTKDH -WWTTHBKTTDTTWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 132 Motif name: C132 Consensus sequence (original motif): WCAGRGWGAGAWCYAGGW Consensus sequence (reverse complement motif): WCCTKGWTCTCWCMCTGW ************************************************************************ Best Matches for Motif ID 132 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryReverse Complement Reverse Complement Forward 1 18 0.0464813 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC WCCTKGWTCTCWCMCTGW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondaryOriginal Motif Original Motif Forward 2 18 0.0491336 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH -WCAGRGWGAGAWCYAGGW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondaryReverse Complement Reverse Complement Forward 1 18 0.0511816 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR WCCTKGWTCTCWCMCTGW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Original Motif Backward 4 18 0.0524801 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB --WCAGRGWGAGAWCYAGGW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondaryOriginal Motif Original Motif Backward 2 18 0.0525963 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB ---WCAGRGWGAGAWCYAGGW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 133 Motif name: C133 Consensus sequence (original motif): AWMAWHDACACHRWMAW Consensus sequence (reverse complement motif): WTYWKHGTGTDHWTRWT ************************************************************************ Best Matches for Motif ID 133 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Original Motif Forward 2 17 0.039607 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -AWMAWHDACACHRWMAW----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Reverse Complement Forward 5 17 0.0412538 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH ----WTYWKHGTGTDHWTRWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_secondaryReverse Complement Reverse Complement Backward 1 17 0.0441279 Species: Mus musculus Consensus sequence (original motif): HDBAHCAWAACADWDVD Consensus sequence (reverse complement motif): DVHWDTGTTWTGDTBDH Alignment: DVHWDTGTTWTGDTBDH WTYWKHGTGTDHWTRWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00119 Nkx2-9 Reverse Complement Original Motif Forward 1 17 0.0448373 Species: Mus musculus Consensus sequence (original motif): TTTDAAGTACTTVAADH Consensus sequence (reverse complement motif): HDTTBAAGTACTTDAAA Alignment: TTTDAAGTACTTVAADH WTYWKHGTGTDHWTRWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondaryReverse Complement Original Motif Forward 2 17 0.0454758 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB -WTYWKHGTGTDHWTRWT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 134 Motif name: C134 Consensus sequence (original motif): CCBCCCCSCCC Consensus sequence (reverse complement motif): GGGSGGGGBGG ************************************************************************ Best Matches for Motif ID 134 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primaryReverse Complement Reverse Complement Backward 1 11 0.00418064 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD ----GGGSGGGGBGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primaryReverse Complement Reverse Complement Backward 1 11 0.0057444 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: BHHDYGGGGGGGGBVD -----GGGSGGGGBGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondaryOriginal Motif Original Motif Forward 2 11 0.0142081 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB -CCBCCCCSCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondaryOriginal Motif Original Motif Forward 1 11 0.0188242 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: HBBBCCGCCCCWHHHV CCBCCCCSCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondaryReverse Complement Reverse Complement Backward 1 11 0.0189121 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: HHHHDGGGGCGGDBHDV ------GGGSGGGGBGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 135 Motif name: C135 Consensus sequence (original motif): KKCCKAGMACBMASMM Consensus sequence (reverse complement motif): RYSTYVGTYCTYGGRY ************************************************************************ Best Matches for Motif ID 135 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00390 Tcf1 Reverse Complement Reverse Complement Backward 2 16 0.0428575 Species: Mus musculus Consensus sequence (original motif): HSKBVGTTAACTAADDB Consensus sequence (reverse complement motif): VDDTTAGTTAACBVRSD Alignment: VDDTTAGTTAACBVRSD RYSTYVGTYCTYGGRY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00389 Nkx3-1 Reverse Complement Reverse Complement Forward 2 16 0.0437525 Species: Mus musculus Consensus sequence (original motif): DDHDAAGTACTTAAADB Consensus sequence (reverse complement motif): BDTTTAAGTACTTDDDD Alignment: BDTTTAAGTACTTDDDD -RYSTYVGTYCTYGGRY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00100 Gata6_secondaryOriginal Motif Original Motif Backward 1 16 0.0456644 Species: Mus musculus Consensus sequence (original motif): GBBVCGATATCGSVGYD Consensus sequence (reverse complement motif): HKCBSCGATATCGVBBC Alignment: GBBVCGATATCGSVGYD -KKCCKAGMACBMASMM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondaryReverse Complement Reverse Complement Forward 2 16 0.0458473 Species: Mus musculus Consensus sequence (original motif): DBTHHAAAAAAAAVHDH Consensus sequence (reverse complement motif): DDHBTTTTTTTTHDAVH Alignment: DDHBTTTTTTTTHDAVH -RYSTYVGTYCTYGGRY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Original Motif Original Motif Backward 2 16 0.0463964 Species: Mus musculus Consensus sequence (original motif): DBHBDTGACCCCDHVHB Consensus sequence (reverse complement motif): VHBHDGGGGTCAHBHBD Alignment: DBHBDTGACCCCDHVHB KKCCKAGMACBMASMM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 136 Motif name: C136 Consensus sequence (original motif): GDGGVKSMHGGGRMT Consensus sequence (reverse complement motif): AYKCCCDRSYVCCHC ************************************************************************ Best Matches for Motif ID 136 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Original Motif Backward 8 15 0.0296869 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH AYKCCCDRSYVCCHC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_secondaryOriginal Motif Reverse Complement Forward 1 15 0.0329478 Species: Mus musculus Consensus sequence (original motif): VVVRACAGVCBCDCC Consensus sequence (reverse complement motif): GGDGBGVCTGTKVVB Alignment: VVVRACAGVCBCDCC GDGGVKSMHGGGRMT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primaryOriginal Motif Reverse Complement Forward 1 15 0.0360132 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD GDGGVKSMHGGGRMT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondaryReverse Complement Original Motif Forward 1 15 0.0383817 Species: Mus musculus Consensus sequence (original motif): DDGMCCTBGTCCHYHV Consensus sequence (reverse complement motif): VHMDGGACVAGGRCDH Alignment: DDGMCCTBGTCCHYHV AYKCCCDRSYVCCHC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00096 Sox13_secondaryOriginal Motif Original Motif Forward 1 15 0.0391249 Species: Mus musculus Consensus sequence (original motif): DDDHTGGGTGGGHAHHD Consensus sequence (reverse complement motif): DHHTHCCCACCCAHDDH Alignment: DDDHTGGGTGGGHAHHD GDGGVKSMHGGGRMT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 137 Motif name: C137 Consensus sequence (original motif): RAAYTCAGRAAY Consensus sequence (reverse complement motif): MTTKCTGAKTTK ************************************************************************ Best Matches for Motif ID 137 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00085 Sfpi1_secondaryOriginal Motif Original Motif Forward 2 12 0.00902566 Species: Mus musculus Consensus sequence (original motif): HHAWTTHVGGAACH Consensus sequence (reverse complement motif): DGTTCCVDAAWTHD Alignment: HHAWTTHVGGAACH -RAAYTCAGRAAY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondaryOriginal Motif Original Motif Forward 5 12 0.0179124 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: VVDBASACAAAGRADH ----RAAYTCAGRAAY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00185 Pbx1 Reverse Complement Reverse Complement Forward 6 12 0.0179708 Species: Mus musculus Consensus sequence (original motif): HYAYMCATCAAWHWDVV Consensus sequence (reverse complement motif): BVDWHWTTGATGRKTKH Alignment: BVDWHWTTGATGRKTKH -----MTTKCTGAKTTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Original Motif Forward 5 12 0.0209132 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HBDDDAACAAAGRVBHH ----RAAYTCAGRAAY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Original Motif Forward 5 12 0.0212068 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH ----RAAYTCAGRAAY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 138 Motif name: C138 Consensus sequence (original motif): AAGAAARSAAG Consensus sequence (reverse complement motif): CTTSKTTTCTT ************************************************************************ Best Matches for Motif ID 138 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Reverse Complement Reverse Complement Backward 5 11 0.0334943 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: HHVBYTTTTTTTTDDVV --CTTSKTTTCTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primaryReverse Complement Reverse Complement Backward 3 11 0.0441276 Species: Mus musculus Consensus sequence (original motif): HDYAAAHAAMAADHD Consensus sequence (reverse complement motif): HHHTTRTTDTTTKDH Alignment: HHHTTRTTDTTTKDH --CTTSKTTTCTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00028 Tcfap2e_secondaryOriginal Motif Original Motif Forward 3 11 0.0449117 Species: Mus musculus Consensus sequence (original motif): HDCDBRAAAAAADD Consensus sequence (reverse complement motif): DDTTTTTTMBDGDH Alignment: HDCDBRAAAAAADD --AAGAAARSAAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00171 Msx3 Reverse Complement Reverse Complement Backward 4 11 0.0452028 Species: Mus musculus Consensus sequence (original motif): VAHAACYAATTAABHH Consensus sequence (reverse complement motif): HHVTTAATTKGTTHTV Alignment: HHVTTAATTKGTTHTV --CTTSKTTTCTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_secondaryReverse Complement Reverse Complement Backward 4 11 0.0456684 Species: Mus musculus Consensus sequence (original motif): HHHAYAAYAACAHHH Consensus sequence (reverse complement motif): HDDTGTTKTTKTHHD Alignment: HDDTGTTKTTKTHHD -CTTSKTTTCTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 139 Motif name: C139 Consensus sequence (original motif): WWMAAABWWWVAAAAWW Consensus sequence (reverse complement motif): WWTTTTVWWWBTTTYWW ************************************************************************ Best Matches for Motif ID 139 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Backward 3 17 0.0481917 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW ---WWMAAABWWWVAAAAWW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Forward 1 17 0.0496844 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH WWMAAABWWWVAAAAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Reverse Complement Reverse Complement Backward 1 17 0.0509582 Species: Mus musculus Consensus sequence (original motif): HARTHAATTAWTAVDHD Consensus sequence (reverse complement motif): DHDBTAWTAATTHAKTH Alignment: DHDBTAWTAATTHAKTH WWTTTTVWWWBTTTYWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondaryOriginal Motif Original Motif Forward 1 17 0.0532816 Species: Mus musculus Consensus sequence (original motif): DBTHHAAAAAAAAVHDH Consensus sequence (reverse complement motif): DDHBTTTTTTTTHDAVH Alignment: DBTHHAAAAAAAAVHDH WWMAAABWWWVAAAAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_secondaryOriginal Motif Reverse Complement Forward 1 17 0.05356 Species: Mus musculus Consensus sequence (original motif): DYGVKTCAATAABTYDD Consensus sequence (reverse complement motif): HDMAVTTATTGARVCMH Alignment: HDMAVTTATTGARVCMH WWMAAABWWWVAAAAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 140 Motif name: C140 Consensus sequence (original motif): BSCCBCVSSSBCCYHVG Consensus sequence (reverse complement motif): CVDMGGBSSSVGBGGSB ************************************************************************ Best Matches for Motif ID 140 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Original Motif Forward 1 17 0.0510096 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH BSCCBCVSSSBCCYHVG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Backward 5 17 0.0520625 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB --CVDMGGBSSSVGBGGSB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondaryOriginal Motif Original Motif Backward 1 17 0.0523971 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH BSCCBCVSSSBCCYHVG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Forward 7 17 0.0544357 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH ------BSCCBCVSSSBCCYHVG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryReverse Complement Reverse Complement Forward 3 17 0.0585258 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV --CVDMGGBSSSVGBGGSB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 141 Motif name: C141 Consensus sequence (original motif): YMATCCYRSYRCTTGKR Consensus sequence (reverse complement motif): KYCAAGKMSKMGGATRK ************************************************************************ Best Matches for Motif ID 141 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondaryReverse Complement Original Motif Forward 2 17 0.048695 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV -KYCAAGKMSKMGGATRK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondaryReverse Complement Reverse Complement Backward 3 17 0.0533376 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: BDVBCDACGCKCGCGTBHRKHD ---KYCAAGKMSKMGGATRK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondaryOriginal Motif Original Motif Backward 1 17 0.0540672 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH YMATCCYRSYRCTTGKR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Reverse Complement Forward 1 17 0.0558883 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW KYCAAGKMSKMGGATRK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Reverse Complement Backward 1 17 0.0562075 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB KYCAAGKMSKMGGATRK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 142 Motif name: C142 Consensus sequence (original motif): WHAAAAAWTAAAAWW Consensus sequence (reverse complement motif): WWTTTTAWTTTTTHW ************************************************************************ Best Matches for Motif ID 142 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Reverse Complement Reverse Complement Forward 1 15 0.0209943 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: HHVBYTTTTTTTTDDVV WWTTTTAWTTTTTHW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Original Motif Original Motif Backward 3 15 0.0296488 Species: Mus musculus Consensus sequence (original motif): HARTHAATTAWTAVDHD Consensus sequence (reverse complement motif): DHDBTAWTAATTHAKTH Alignment: HARTHAATTAWTAVDHD WHAAAAAWTAAAAWW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00044 Mafk_secondaryReverse Complement Reverse Complement Forward 1 15 0.0298134 Species: Mus musculus Consensus sequence (original motif): VHAAAAADTGCAHBR Consensus sequence (reverse complement motif): MBHTGCADTTTTTHV Alignment: MBHTGCADTTTTTHV WWTTTTAWTTTTTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondaryReverse Complement Reverse Complement Backward 2 15 0.02982 Species: Mus musculus Consensus sequence (original motif): DBTHHAAAAAAAAVHDH Consensus sequence (reverse complement motif): DDHBTTTTTTTTHDAVH Alignment: DDHBTTTTTTTTHDAVH -WWTTTTAWTTTTTHW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primaryReverse Complement Reverse Complement Forward 1 15 0.0336901 Species: Mus musculus Consensus sequence (original motif): HDYAAAHAAMAADHD Consensus sequence (reverse complement motif): HHHTTRTTDTTTKDH Alignment: HHHTTRTTDTTTKDH WWTTTTAWTTTTTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 143 Motif name: C143 Consensus sequence (original motif): MKTGCTKSSMTTAAMK Consensus sequence (reverse complement motif): RRTTAAYSSRAGCARY ************************************************************************ Best Matches for Motif ID 143 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondaryReverse Complement Original Motif Forward 4 16 0.043815 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH ---RRTTAAYSSRAGCARY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Reverse Complement Original Motif Backward 8 16 0.0460848 Species: Mus musculus Consensus sequence (original motif): HDTBHHCCHTAGCAACVVDHHHH Consensus sequence (reverse complement motif): HHHHDVVGTTGCTAHGGDHBAHH Alignment: HDTBHHCCHTAGCAACVVDHHHH RRTTAAYSSRAGCARY------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00190 Nkx2-3 Original Motif Reverse Complement Forward 1 16 0.0485356 Species: Mus musculus Consensus sequence (original motif): YYTTAAGTACTTAAHD Consensus sequence (reverse complement motif): HHTTAAGTACTTAAMK Alignment: HHTTAAGTACTTAAMK MKTGCTKSSMTTAAMK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00421 Etv1 Reverse Complement Original Motif Backward 2 16 0.0513932 Species: Mus musculus Consensus sequence (original motif): MVHBACCGGAAGTVDVH Consensus sequence (reverse complement motif): HBDBACTTCCGGTBHVY Alignment: MVHBACCGGAAGTVDVH RRTTAAYSSRAGCARY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00410 Elk1 Reverse Complement Original Motif Forward 1 16 0.051952 Species: Mus musculus Consensus sequence (original motif): VVHBACCGGAAGTDBHD Consensus sequence (reverse complement motif): DHBDACTTCCGGTVHVB Alignment: VVHBACCGGAAGTDBHD RRTTAAYSSRAGCARY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 144 Motif name: C144 Consensus sequence (original motif): GACCAGRSYRGYCTC Consensus sequence (reverse complement motif): GAGKCKKSKCTGGTC ************************************************************************ Best Matches for Motif ID 144 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primaryReverse Complement Reverse Complement Backward 9 15 0.0365285 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT GAGKCKKSKCTGGTC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryReverse Complement Reverse Complement Backward 8 15 0.0367839 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BTBVTCVTGGGTGGTCMVVDVBB -GAGKCKKSKCTGGTC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primaryReverse Complement Reverse Complement Forward 2 15 0.0372292 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DBCDWHCTGGGTGGTCMDHBBAH -GAGKCKKSKCTGGTC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primaryOriginal Motif Reverse Complement Backward 7 15 0.037305 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH -GACCAGRSYRGYCTC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondaryReverse Complement Reverse Complement Forward 2 15 0.0395722 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: DVVTTVGTGGGHGGYAMHWHHHY -GAGKCKKSKCTGGTC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 145 Motif name: C145 Consensus sequence (original motif): WWCADCAMCHAMWW Consensus sequence (reverse complement motif): WWRTHGYTGDTGWW ************************************************************************ Best Matches for Motif ID 145 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primaryOriginal Motif Original Motif Forward 2 14 0.0335902 Species: Mus musculus Consensus sequence (original motif): HDYAAAHAAMAADHD Consensus sequence (reverse complement motif): HHHTTRTTDTTTKDH Alignment: HDYAAAHAAMAADHD -WWCADCAMCHAMWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00069 Sox1_secondaryReverse Complement Original Motif Backward 2 14 0.0379211 Species: Mus musculus Consensus sequence (original motif): HBDTAATTGTTABBV Consensus sequence (reverse complement motif): VBVTAACAATTADVD Alignment: HBDTAATTGTTABBV WWRTHGYTGDTGWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00185 Pbx1 Original Motif Original Motif Forward 4 14 0.0393885 Species: Mus musculus Consensus sequence (original motif): HYAYMCATCAAWHWDVV Consensus sequence (reverse complement motif): BVDWHWTTGATGRKTKH Alignment: HYAYMCATCAAWHWDVV ---WWCADCAMCHAMWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00091 Sox5_secondaryOriginal Motif Original Motif Forward 2 14 0.0396706 Species: Mus musculus Consensus sequence (original motif): DHDCATMATTDASDD Consensus sequence (reverse complement motif): DHSTDAATYATGDHD Alignment: DHDCATMATTDASDD -WWCADCAMCHAMWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_secondaryOriginal Motif Original Motif Backward 2 14 0.0406825 Species: Mus musculus Consensus sequence (original motif): VDVVATCAATCAHBHD Consensus sequence (reverse complement motif): DHVDTGATTGATVBDV Alignment: VDVVATCAATCAHBHD -WWCADCAMCHAMWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 146 Motif name: C146 Consensus sequence (original motif): YRGCSAGGGSTAYR Consensus sequence (reverse complement motif): KMTASCCCTSGCKK ************************************************************************ Best Matches for Motif ID 146 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_secondaryOriginal Motif Reverse Complement Forward 3 14 0.0330877 Species: Mus musculus Consensus sequence (original motif): DDDTWCCCCCCGGDRVH Consensus sequence (reverse complement motif): HVKDCCGGGGGGWADDD Alignment: HVKDCCGGGGGGWADDD --YRGCSAGGGSTAYR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Reverse Complement Forward 6 14 0.0345026 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB -----YRGCSAGGGSTAYR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Reverse Complement Forward 3 14 0.0369871 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: DHHDGGGCGRGGKHBH --YRGCSAGGGSTAYR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryOriginal Motif Reverse Complement Forward 3 14 0.0374088 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK --YRGCSAGGGSTAYR------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00096 Sox13_secondaryOriginal Motif Original Motif Backward 1 14 0.0400162 Species: Mus musculus Consensus sequence (original motif): DDDHTGGGTGGGHAHHD Consensus sequence (reverse complement motif): DHHTHCCCACCCAHDDH Alignment: DDDHTGGGTGGGHAHHD ---YRGCSAGGGSTAYR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 147 Motif name: C147 Consensus sequence (original motif): CYWGGKCTACMCAGRG Consensus sequence (reverse complement motif): CKCTGYGTAGYCCWKG ************************************************************************ Best Matches for Motif ID 147 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primaryOriginal Motif Original Motif Forward 5 16 0.0270313 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: HTBVVVDGGACCACCCRGRDBG ----CYWGGKCTACMCAGRG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primaryOriginal Motif Original Motif Forward 4 16 0.029263 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DTVBDDRGACCACCCAGDWDGBH ---CYWGGKCTACMCAGRG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primaryOriginal Motif Reverse Complement Backward 5 16 0.0296975 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB ---CYWGGKCTACMCAGRG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primaryOriginal Motif Original Motif Backward 3 16 0.0322159 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: HDGHHBHRGACCACCCGSVDVG ----CYWGGKCTACMCAGRG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryOriginal Motif Original Motif Forward 4 16 0.0386994 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB ---CYWGGKCTACMCAGRG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 148 Motif name: C148 Consensus sequence (original motif): SCMSBGACACHGSCAS Consensus sequence (reverse complement motif): STGSCDGTGTCBSYGS ************************************************************************ Best Matches for Motif ID 148 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_secondaryReverse Complement Original Motif Forward 1 16 0.0245227 Species: Mus musculus Consensus sequence (original motif): VBVDAGGTGTYGVBBV Consensus sequence (reverse complement motif): VVBVCKACACCTHVBV Alignment: VBVDAGGTGTYGVBBV STGSCDGTGTCBSYGS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00100 Gata6_secondaryReverse Complement Reverse Complement Forward 2 16 0.0325938 Species: Mus musculus Consensus sequence (original motif): GBBVCGATATCGSVGYD Consensus sequence (reverse complement motif): HKCBSCGATATCGVBBC Alignment: HKCBSCGATATCGVBBC -STGSCDGTGTCBSYGS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Original Motif Original Motif Forward 1 16 0.0369917 Species: Mus musculus Consensus sequence (original motif): DVMVGCACACACKCVH Consensus sequence (reverse complement motif): HBGYGTGTGTGCVRVD Alignment: DVMVGCACACACKCVH SCMSBGACACHGSCAS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00016 Sry_secondary Original Motif Original Motif Backward 1 16 0.0372098 Species: Mus musculus Consensus sequence (original motif): HHDHDRAACAATDDVHV Consensus sequence (reverse complement motif): VHVHDATTGTTMHDDDH Alignment: HHDHDRAACAATDDVHV -SCMSBGACACHGSCAS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondaryOriginal Motif Original Motif Backward 1 16 0.037346 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: VVDBASACAAAGRADH SCMSBGACACHGSCAS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 149 Motif name: C149 Consensus sequence (original motif): TKAACTCAGRMR Consensus sequence (reverse complement motif): KYKCTGAGTTYA ************************************************************************ Best Matches for Motif ID 149 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00148 Hdx Reverse Complement Reverse Complement Backward 5 12 0.0197225 Species: Mus musculus Consensus sequence (original motif): DDKDHGAAATCAHHBHV Consensus sequence (reverse complement motif): BDBDHTGATTTCDHYDD Alignment: BDBDHTGATTTCDHYDD -KYKCTGAGTTYA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00020 Atf1_primary Reverse Complement Reverse Complement Forward 1 12 0.0267132 Species: Mus musculus Consensus sequence (original motif): DBDRTGACGTCAYHRD Consensus sequence (reverse complement motif): DMDMTGACGTCAKHBD Alignment: DMDMTGACGTCAKHBD KYKCTGAGTTYA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00014 Sox17_secondaryReverse Complement Reverse Complement Backward 4 12 0.0270855 Species: Mus musculus Consensus sequence (original motif): VHBHHCATTCATRHVDD Consensus sequence (reverse complement motif): DDBDKATGAATGHDBHV Alignment: DDBDKATGAATGHDBHV --KYKCTGAGTTYA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00064 Sox18_secondaryReverse Complement Original Motif Forward 1 12 0.0271199 Species: Mus musculus Consensus sequence (original motif): DBVBTRAATTYADDHV Consensus sequence (reverse complement motif): VDHDTKAATTMABBBH Alignment: DBVBTRAATTYADDHV KYKCTGAGTTYA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Original Motif Reverse Complement Backward 5 12 0.0301995 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: DMTWDGTCAGCADWTTH -TKAACTCAGRMR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 150 Motif name: C150 Consensus sequence (original motif): YYCMRSSACASYCARR Consensus sequence (reverse complement motif): KKTGKSTGTSSKRGMM ************************************************************************ Best Matches for Motif ID 150 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primaryOriginal Motif Original Motif Forward 4 16 0.022327 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: ABBBBVVRGACCACCCACRDBBM ---YYCMRSSACASYCARR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryOriginal Motif Original Motif Forward 3 16 0.0227877 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB --YYCMRSSACASYCARR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryOriginal Motif Original Motif Forward 2 16 0.0235838 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -YYCMRSSACASYCARR------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Reverse Complement Backward 7 16 0.0250268 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH -YYCMRSSACASYCARR------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primaryOriginal Motif Original Motif Backward 6 16 0.0265224 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DTVBDDRGACCACCCAGDWDGBH --YYCMRSSACASYCARR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 151 Motif name: C151 Consensus sequence (original motif): SWGGCWGKCCWGGVWS Consensus sequence (reverse complement motif): SWBCCWGGYCWGCCWS ************************************************************************ Best Matches for Motif ID 151 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Original Motif Forward 8 16 0.0274084 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB -------SWGGCWGKCCWGGVWS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondaryReverse Complement Original Motif Forward 1 16 0.0288558 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH SWBCCWGGYCWGCCWS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryReverse Complement Original Motif Backward 8 16 0.0368282 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH SWBCCWGGYCWGCCWS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primaryReverse Complement Original Motif Backward 7 16 0.0424675 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB -SWBCCWGGYCWGCCWS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primaryReverse Complement Original Motif Forward 3 16 0.04298 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: ABBBBVVRGACCACCCACRDBBM --SWBCCWGGYCWGCCWS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 152 Motif name: C152 Consensus sequence (original motif): KWRRKWRARAWMRAWM Consensus sequence (reverse complement motif): YWTKYWTKTKWYKKWR ************************************************************************ Best Matches for Motif ID 152 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Reverse Complement Reverse Complement Backward 2 16 0.0218448 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: HHVBYTTTTTTTTDDVV YWTKYWTKTKWYKKWR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondaryReverse Complement Reverse Complement Backward 1 16 0.038475 Species: Mus musculus Consensus sequence (original motif): DBTHHAAAAAAAAVHDH Consensus sequence (reverse complement motif): DDHBTTTTTTTTHDAVH Alignment: DDHBTTTTTTTTHDAVH -YWTKYWTKTKWYKKWR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00051 Sox8_primary Reverse Complement Original Motif Forward 2 16 0.0392698 Species: Mus musculus Consensus sequence (original motif): DDATBWATTGTTHHDDD Consensus sequence (reverse complement motif): DDDHDAACAATWBATDD Alignment: DDATBWATTGTTHHDDD -YWTKYWTKTKWYKKWR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondaryReverse Complement Reverse Complement Forward 1 16 0.0401556 Species: Mus musculus Consensus sequence (original motif): ADDDYAWAACAAMAHH Consensus sequence (reverse complement motif): HDTYTTGTTWTKDDDT Alignment: HDTYTTGTTWTKDDDT YWTKYWTKTKWYKKWR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Original Motif Original Motif Forward 1 16 0.0410382 Species: Mus musculus Consensus sequence (original motif): HARTHAATTAWTAVDHD Consensus sequence (reverse complement motif): DHDBTAWTAATTHAKTH Alignment: HARTHAATTAWTAVDHD KWRRKWRARAWMRAWM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 153 Motif name: C153 Consensus sequence (original motif): YYAGRVTGGCBYTGR Consensus sequence (reverse complement motif): MCAMBGCCAVMCTKM ************************************************************************ Best Matches for Motif ID 153 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondaryOriginal Motif Original Motif Forward 7 15 0.0398267 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB ------YYAGRVTGGCBYTGR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondaryReverse Complement Original Motif Forward 3 15 0.0410774 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH --MCAMBGCCAVMCTKM------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_primary Reverse Complement Original Motif Forward 1 15 0.0449339 Species: Mus musculus Consensus sequence (original motif): DBBATGCCAACCHVHH Consensus sequence (reverse complement motif): DDBHGGTTGGCATVBD Alignment: DDBHGGTTGGCATVBD MCAMBGCCAVMCTKM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondaryOriginal Motif Original Motif Backward 1 15 0.0460502 Species: Mus musculus Consensus sequence (original motif): BBHBGAGTGGGAHHDB Consensus sequence (reverse complement motif): BHHDTCCCACTCBDBV Alignment: BBHBGAGTGGGAHHDB -YYAGRVTGGCBYTGR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondaryReverse Complement Reverse Complement Forward 2 15 0.0461303 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH -MCAMBGCCAVMCTKM------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-19-2016 22:04:18 Runtime: 1193.59 seconds MOTIFSIM is written by Ngoc Tam L. 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