MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.1

INPUT

Input Parameters
Number of files: 4
Number of top significant motifs: 10
Number of best matches: 5
Similarity cutoff >= 0.75
Matching motif database: UniProbe Mus Musculus
Phylogenetic tree: Yes
Combined similar motifs: Yes
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
DREME_DM01.txt 51 1
MEME-CHIP_DM01.txt 9 2
PScanChIP_DM01.txt 27 3
RSAT_peak-motifs_DM01.txt 40 4

RESULTS

Top 10 Significant Motifs - Global Matching (Highest to Lowest)

Dataset #: 3 Motif ID: 69 Motif name: NKX3-1

Original motif     Consensus sequence: ATACTTA Reverse complement motif     Consensus sequence: TAAGTAT

Best Matches for Top Significant Motif ID 69 (Highest to Lowest)

Dataset #: 4
Motif ID: 90
Motif name: ymTACATAyw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0

Alignment:
DBTATGTAHH
--TAAGTAT-

Original motif     Consensus sequence: HHTACATABD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.00274846

Alignment:
TATGTAD
TAAGTAT

Original motif     Consensus sequence: HTACATA Reverse complement motif     Consensus sequence: TATGTAD

Dataset #: 1
Motif ID: 34
Motif name: Motif 34
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.00883486

Alignment:
ATATTTA
ATACTTA

Original motif     Consensus sequence: ATATTTA Reverse complement motif     Consensus sequence: TAAATAT

Dataset #: 4
Motif ID: 106
Motif name: wtAATTAAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0100679

Alignment:
HATTAATTAD
---TAAGTAT

Original motif     Consensus sequence: DTAATTAATH Reverse complement motif     Consensus sequence: HATTAATTAD

Dataset #: 4
Motif ID: 100
Motif name: wwTAATAAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0316418

Alignment:
DDTTATTAHD
--TAAGTAT-

Original motif     Consensus sequence: DHTAATAADD Reverse complement motif     Consensus sequence: DDTTATTAHD

Dataset #: 2 Motif ID: 53 Motif name: Motif 53

Original motif     Consensus sequence: TSTGTR Reverse complement motif     Consensus sequence: MACASA

Best Matches for Top Significant Motif ID 53 (Highest to Lowest)

Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.00228262

Alignment:
CACASASA
--MACASA

Original motif     Consensus sequence: CACASASA Reverse complement motif     Consensus sequence: TSTSTGTG

Dataset #: 4
Motif ID: 114
Motif name: awAACAcAAwa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0122629

Alignment:
DDAACACAADV
--MACASA---

Original motif     Consensus sequence: DDAACACAADV Reverse complement motif     Consensus sequence: BDTTGTGTTDD

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0137023

Alignment:
MTSTGTA
-TSTGTR

Original motif     Consensus sequence: MTSTGTA Reverse complement motif     Consensus sequence: TACASAR

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0252334

Alignment:
GTGTGTGT
-TSTGTR-

Original motif     Consensus sequence: ACACACAC Reverse complement motif     Consensus sequence: GTGTGTGT

Dataset #: 1
Motif ID: 12
Motif name: Motif 12
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0262273

Alignment:
MTGTGTGC
-TSTGTR-

Original motif     Consensus sequence: GCACACAY Reverse complement motif     Consensus sequence: MTGTGTGC

Dataset #: 1 Motif ID: 25 Motif name: Motif 25

Original motif     Consensus sequence: TTTAWW Reverse complement motif     Consensus sequence: WWTAAA

Best Matches for Top Significant Motif ID 25 (Highest to Lowest)

Dataset #: 4
Motif ID: 91
Motif name: wtATTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0116421

Alignment:
HWTAAAATHD
WWTAAA----

Original motif     Consensus sequence: DHATTTTAWH Reverse complement motif     Consensus sequence: HWTAAAATHD

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0118254

Alignment:
DHATKTTTAHH
-----TTTAWW

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 3
Motif ID: 70
Motif name: Foxq1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0158082

Alignment:
HATTGTTTATW
-----TTTAWW

Original motif     Consensus sequence: HATTGTTTATW Reverse complement motif     Consensus sequence: WATAAACAATH

Dataset #: 2
Motif ID: 55
Motif name: Motif 55
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0307675

Alignment:
TTTTAAA
-TTTAWW

Original motif     Consensus sequence: TTTAAAA Reverse complement motif     Consensus sequence: TTTTAAA

Dataset #: 3
Motif ID: 67
Motif name: FOXI1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0347747

Alignment:
KBDTRTTTRTTT
-----TTTAWW-

Original motif     Consensus sequence: KBDTRTTTRTTT Reverse complement motif     Consensus sequence: AAAMAAAMADBY

Dataset #: 1 Motif ID: 24 Motif name: Motif 24

Original motif     Consensus sequence: CACGB Reverse complement motif     Consensus sequence: BCGTG

Best Matches for Top Significant Motif ID 24 (Highest to Lowest)

Dataset #: 2
Motif ID: 56
Motif name: Motif 56
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 5
Similarity score: 0

Alignment:
TCCGTG
-BCGTG

Original motif     Consensus sequence: CACGGA Reverse complement motif     Consensus sequence: TCCGTG

Dataset #: 4
Motif ID: 115
Motif name: ysCmAGCACwy
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 5
Similarity score: 0.0186397

Alignment:
DHGTGCTRGVH
BCGTG------

Original motif     Consensus sequence: HVCMAGCACHH Reverse complement motif     Consensus sequence: DHGTGCTRGVH

Dataset #: 4
Motif ID: 107
Motif name: crCGyGCRcg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 5
Similarity score: 0.019278

Alignment:
CGTGCACGCG
----CACGB-

Original motif     Consensus sequence: CGCGTGCACG Reverse complement motif     Consensus sequence: CGTGCACGCG

Dataset #: 2
Motif ID: 58
Motif name: Motif 58
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 5
Similarity score: 0.0339655

Alignment:
CACACACACACACA
CACGB---------

Original motif     Consensus sequence: CACACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTGTG

Dataset #: 4
Motif ID: 93
Motif name: cmCARCACTwr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.0385683

Alignment:
VHAGTGCTGHB
-BCGTG-----

Original motif     Consensus sequence: BHCAGCACTHV Reverse complement motif     Consensus sequence: VHAGTGCTGHB

Dataset #: 2 Motif ID: 54 Motif name: Motif 54

Original motif     Consensus sequence: RGAAA Reverse complement motif     Consensus sequence: TTTCK

Best Matches for Top Significant Motif ID 54 (Highest to Lowest)

Dataset #: 1
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 5
Similarity score: 0

Alignment:
RGARGAAA
---RGAAA

Original motif     Consensus sequence: RGARGAAA Reverse complement motif     Consensus sequence: TTTCKTCK

Dataset #: 1
Motif ID: 28
Motif name: Motif 28
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.0199405

Alignment:
TTTCTVT
TTTCK--

Original motif     Consensus sequence: AVAGAAA Reverse complement motif     Consensus sequence: TTTCTVT

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 5
Similarity score: 0.0284722

Alignment:
CMTTTCC
TTTCK--

Original motif     Consensus sequence: CMTTTCC Reverse complement motif     Consensus sequence: GGAAARG

Dataset #: 1
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.0284722

Alignment:
GGAAASA
RGAAA--

Original motif     Consensus sequence: GGAAASA Reverse complement motif     Consensus sequence: TSTTTCC

Dataset #: 1
Motif ID: 44
Motif name: Motif 44
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 5
Similarity score: 0.0339244

Alignment:
CATTTCT
--TTTCK

Original motif     Consensus sequence: AGAAATG Reverse complement motif     Consensus sequence: CATTTCT

Dataset #: 3 Motif ID: 64 Motif name: ARID3A

Original motif     Consensus sequence: ATYAAA Reverse complement motif     Consensus sequence: TTTMAT

Best Matches for Top Significant Motif ID 64 (Highest to Lowest)

Dataset #: 4
Motif ID: 106
Motif name: wtAATTAAtw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0114914

Alignment:
DTAATTAATH
---ATYAAA-

Original motif     Consensus sequence: DTAATTAATH Reverse complement motif     Consensus sequence: HATTAATTAD

Dataset #: 1
Motif ID: 20
Motif name: Motif 20
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.015396

Alignment:
ATTAMAGG
ATYAAA--

Original motif     Consensus sequence: ATTAMAGG Reverse complement motif     Consensus sequence: CCTYTAAT

Dataset #: 1
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0340365

Alignment:
AGATAAAR
--ATYAAA

Original motif     Consensus sequence: AGATAAAR Reverse complement motif     Consensus sequence: KTTTATCT

Dataset #: 1
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0368439

Alignment:
WWTAAA
ATYAAA

Original motif     Consensus sequence: TTTAWW Reverse complement motif     Consensus sequence: WWTAAA

Dataset #: 4
Motif ID: 100
Motif name: wwTAATAAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0394923

Alignment:
DHTAATAADD
TTTMAT----

Original motif     Consensus sequence: DHTAATAADD Reverse complement motif     Consensus sequence: DDTTATTAHD

Dataset #: 1 Motif ID: 6 Motif name: Motif 6

Original motif     Consensus sequence: CCCASCMC Reverse complement motif     Consensus sequence: GYGSTGGG

Best Matches for Top Significant Motif ID 6 (Highest to Lowest)

Dataset #: 4
Motif ID: 115
Motif name: ysCmAGCACwy
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0212781

Alignment:
DHGTGCTRGVH
--GYGSTGGG-

Original motif     Consensus sequence: HVCMAGCACHH Reverse complement motif     Consensus sequence: DHGTGCTRGVH

Dataset #: 4
Motif ID: 111
Motif name: ccCCmCaCCCCcc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0266863

Alignment:
HBCCCCACCCCBH
---CCCASCMC--

Original motif     Consensus sequence: HBCCCCACCCCBH Reverse complement motif     Consensus sequence: DBGGGGTGGGGBD

Dataset #: 4
Motif ID: 93
Motif name: cmCARCACTwr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.030511

Alignment:
BHCAGCACTHV
CCCASCMC---

Original motif     Consensus sequence: BHCAGCACTHV Reverse complement motif     Consensus sequence: VHAGTGCTGHB

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0322039

Alignment:
BBCCAGCTCMBD
-CCCASCMC---

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 4
Motif ID: 101
Motif name: csCACCCCgg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0415267

Alignment:
HVCACCCCBB
CCCASCMC--

Original motif     Consensus sequence: HVCACCCCBB Reverse complement motif     Consensus sequence: BBGGGGTGVD

Dataset #: 4 Motif ID: 94 Motif name: yrTCWCAAyr

Original motif     Consensus sequence: HVTCACAAYD Reverse complement motif     Consensus sequence: HKTTGTGABH

Best Matches for Top Significant Motif ID 94 (Highest to Lowest)

Dataset #: 3
Motif ID: 76
Motif name: Sox2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.00762497

Alignment:
CCWTTGTYATGCAAA
----HKTTGTGABH-

Original motif     Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif     Consensus sequence: TTTGCATMACAAWGG

Dataset #: 3
Motif ID: 80
Motif name: Pou5f1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0127574

Alignment:
CWTTGTHATGCAAAT
-----HKTTGTGABH

Original motif     Consensus sequence: CWTTGTHATGCAAAT Reverse complement motif     Consensus sequence: ATTTGCATHACAAWG

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0426407

Alignment:
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC
-------------------HVTCACAAYD-

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 3
Motif ID: 62
Motif name: TBP
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0429648

Alignment:
STATAAAWRVVVVBV
-HVTCACAAYD----

Original motif     Consensus sequence: STATAAAWRVVVVBV Reverse complement motif     Consensus sequence: VBVVVVMWTTTATAS

Dataset #: 3
Motif ID: 83
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0463536

Alignment:
TGAMCTTTGMMCYT
HKTTGTGABH----

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 2 Motif ID: 55 Motif name: Motif 55

Original motif     Consensus sequence: TTTAAAA Reverse complement motif     Consensus sequence: TTTTAAA

Best Matches for Top Significant Motif ID 55 (Highest to Lowest)

Dataset #: 4
Motif ID: 120
Motif name: wtTTTwAAAaw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 7
Similarity score: 0.00286145

Alignment:
HHTTTWAAADD
--TTTAAAA--

Original motif     Consensus sequence: HHTTTWAAADD Reverse complement motif     Consensus sequence: DDTTTWAAAHH

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0142562

Alignment:
TTTWWAAA
-TTTAAAA

Original motif     Consensus sequence: TTTWWAAA Reverse complement motif     Consensus sequence: TTTWWAAA

Dataset #: 4
Motif ID: 91
Motif name: wtATTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.036821

Alignment:
HWTAAAATHD
TTTAAAA---

Original motif     Consensus sequence: DHATTTTAWH Reverse complement motif     Consensus sequence: HWTAAAATHD

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0428268

Alignment:
DHATKTTTAHH
----TTTTAAA

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 3
Motif ID: 62
Motif name: TBP
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.058454

Alignment:
VBVVVVMWTTTATAS
-------TTTTAAA-

Original motif     Consensus sequence: STATAAAWRVVVVBV Reverse complement motif     Consensus sequence: VBVVVVMWTTTATAS

Dataset #: 4 Motif ID: 96 Motif name: mdAAcCAACG

Original motif     Consensus sequence: VDAACCAACG Reverse complement motif     Consensus sequence: CGTTGGTTDB

Best Matches for Top Significant Motif ID 96 (Highest to Lowest)

Dataset #: 2
Motif ID: 60
Motif name: Motif 60
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0244161

Alignment:
YTTTTTRTTTTDTT
--CGTTGGTTDB--

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Dataset #: 3
Motif ID: 70
Motif name: Foxq1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0266383

Alignment:
HATTGTTTATW
-CGTTGGTTDB

Original motif     Consensus sequence: HATTGTTTATW Reverse complement motif     Consensus sequence: WATAAACAATH

Dataset #: 3
Motif ID: 67
Motif name: FOXI1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.036655

Alignment:
AAAMAAAMADBY
VDAACCAACG--

Original motif     Consensus sequence: KBDTRTTTRTTT Reverse complement motif     Consensus sequence: AAAMAAAMADBY

Dataset #: 3
Motif ID: 83
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0376121

Alignment:
TGAMCTTTGMMCYT
CGTTGGTTDB----

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 76
Motif name: Sox2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0382008

Alignment:
TTTGCATMACAAWGG
VDAACCAACG-----

Original motif     Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif     Consensus sequence: TTTGCATMACAAWGG


Significant Motifs - Global and Local Matching (Highest to Lowest)

Dataset #: 3 Motif ID: 69 Motif name: NKX3-1

Original motif     Consensus sequence: ATACTTA Reverse complement motif     Consensus sequence: TAAGTAT

Best Matches for Significant Motif ID 69 (Highest to Lowest)

Dataset #: 4
Motif ID: 90
Motif name: ymTACATAyw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0

Alignment:
HHTACATABD
-ATACTTA--

Original motif     Consensus sequence: HHTACATABD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 3
Motif ID: 66
Motif name: Lhx3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0.000214177

Alignment:
WAATTAATTAWYB
--TAAGTAT----

Original motif     Consensus sequence: WAATTAATTAWYB Reverse complement motif     Consensus sequence: BMWTAATTAATTW

Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.00274846

Alignment:
TATGTAD
TAAGTAT

Original motif     Consensus sequence: HTACATA Reverse complement motif     Consensus sequence: TATGTAD

Dataset #: 1
Motif ID: 34
Motif name: Motif 34
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.00883486

Alignment:
ATATTTA
ATACTTA

Original motif     Consensus sequence: ATATTTA Reverse complement motif     Consensus sequence: TAAATAT

Dataset #: 4
Motif ID: 106
Motif name: wtAATTAAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0100679

Alignment:
HATTAATTAD
---TAAGTAT

Original motif     Consensus sequence: DTAATTAATH Reverse complement motif     Consensus sequence: HATTAATTAD

Dataset #: 4 Motif ID: 94 Motif name: yrTCWCAAyr

Original motif     Consensus sequence: HVTCACAAYD Reverse complement motif     Consensus sequence: HKTTGTGABH

Best Matches for Significant Motif ID 94 (Highest to Lowest)

Dataset #: 4
Motif ID: 114
Motif name: awAACAcAAwa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.00495535

Alignment:
BDTTGTGTTDD
HKTTGTGABH-

Original motif     Consensus sequence: DDAACACAADV Reverse complement motif     Consensus sequence: BDTTGTGTTDD

Dataset #: 3
Motif ID: 76
Motif name: Sox2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.00762497

Alignment:
CCWTTGTYATGCAAA
----HKTTGTGABH-

Original motif     Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif     Consensus sequence: TTTGCATMACAAWGG

Dataset #: 4
Motif ID: 100
Motif name: wwTAATAAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0114769

Alignment:
DDTTATTAHD
HKTTGTGABH

Original motif     Consensus sequence: DHTAATAADD Reverse complement motif     Consensus sequence: DDTTATTAHD

Dataset #: 3
Motif ID: 80
Motif name: Pou5f1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0127574

Alignment:
CWTTGTHATGCAAAT
-----HKTTGTGABH

Original motif     Consensus sequence: CWTTGTHATGCAAAT Reverse complement motif     Consensus sequence: ATTTGCATHACAAWG

Dataset #: 4
Motif ID: 89
Motif name: aaACAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0208363

Alignment:
AAACAAAACHV
HVTCACAAYD-

Original motif     Consensus sequence: AAACAAAACHV Reverse complement motif     Consensus sequence: BHGTTTTGTTT

Dataset #: 3 Motif ID: 77 Motif name: Sox5

Original motif     Consensus sequence: HAACAAT Reverse complement motif     Consensus sequence: ATTGTTH

Best Matches for Significant Motif ID 77 (Highest to Lowest)

Dataset #: 3
Motif ID: 87
Motif name: SOX9
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0

Alignment:
CMATTGTTH
--ATTGTTH

Original motif     Consensus sequence: DAACAATRG Reverse complement motif     Consensus sequence: CMATTGTTH

Dataset #: 3
Motif ID: 73
Motif name: SRY
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0011033

Alignment:
ATTGTTWDB
ATTGTTH--

Original motif     Consensus sequence: BDWAACAAT Reverse complement motif     Consensus sequence: ATTGTTWDB

Dataset #: 3
Motif ID: 76
Motif name: Sox2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0.022869

Alignment:
TTTGCATMACAAWGG
--HAACAAT------

Original motif     Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif     Consensus sequence: TTTGCATMACAAWGG

Dataset #: 3
Motif ID: 70
Motif name: Foxq1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0242658

Alignment:
HATTGTTTATW
---ATTGTTH-

Original motif     Consensus sequence: HATTGTTTATW Reverse complement motif     Consensus sequence: WATAAACAATH

Dataset #: 4
Motif ID: 89
Motif name: aaACAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.0278776

Alignment:
BHGTTTTGTTT
----ATTGTTH

Original motif     Consensus sequence: AAACAAAACHV Reverse complement motif     Consensus sequence: BHGTTTTGTTT

Dataset #: 2 Motif ID: 53 Motif name: Motif 53

Original motif     Consensus sequence: TSTGTR Reverse complement motif     Consensus sequence: MACASA

Best Matches for Significant Motif ID 53 (Highest to Lowest)

Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.00228262

Alignment:
TSTSTGTG
TSTGTR--

Original motif     Consensus sequence: CACASASA Reverse complement motif     Consensus sequence: TSTSTGTG

Dataset #: 4
Motif ID: 114
Motif name: awAACAcAAwa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0122629

Alignment:
DDAACACAADV
--MACASA---

Original motif     Consensus sequence: DDAACACAADV Reverse complement motif     Consensus sequence: BDTTGTGTTDD

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0137023

Alignment:
MTSTGTA
-TSTGTR

Original motif     Consensus sequence: MTSTGTA Reverse complement motif     Consensus sequence: TACASAR

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0252334

Alignment:
GTGTGTGT
-TSTGTR-

Original motif     Consensus sequence: ACACACAC Reverse complement motif     Consensus sequence: GTGTGTGT

Dataset #: 2
Motif ID: 58
Motif name: Motif 58
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.025412

Alignment:
TGTGTGTGTGTGTG
--------TSTGTR

Original motif     Consensus sequence: CACACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTGTG

Dataset #: 4 Motif ID: 102 Motif name: ssCkGGYCCCsg

Original motif     Consensus sequence: BBCKGGCCCCVV Reverse complement motif     Consensus sequence: VVGGGGCCRGBB

Best Matches for Significant Motif ID 102 (Highest to Lowest)

Dataset #: 4
Motif ID: 103
Motif name: csCCaGCTCCCgs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.00699729

Alignment:
BVGGGAGCTGGBB
-VVGGGGCCRGBB

Original motif     Consensus sequence: BBCCAGCTCCCVB Reverse complement motif     Consensus sequence: BVGGGAGCTGGBB

Dataset #: 4
Motif ID: 124
Motif name: cswGGGCCCwsg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.00901563

Alignment:
VVWGGGCCCWBB
BBCKGGCCCCVV

Original motif     Consensus sequence: VVWGGGCCCWBB Reverse complement motif     Consensus sequence: BBWGGGCCCWVV

Dataset #: 4
Motif ID: 111
Motif name: ccCCmCaCCCCcc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.015463

Alignment:
DBGGGGTGGGGBD
VVGGGGCCRGBB-

Original motif     Consensus sequence: HBCCCCACCCCBH Reverse complement motif     Consensus sequence: DBGGGGTGGGGBD

Dataset #: 4
Motif ID: 122
Motif name: hsCCAGGCCTGGsr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0222107

Alignment:
HVCCAGGCCTGGBD
-BBCKGGCCCCVV-

Original motif     Consensus sequence: HVCCAGGCCTGGBD Reverse complement motif     Consensus sequence: HBCCAGGCCTGGVD

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0277516

Alignment:
BBCCAGCTCMBD
BBCKGGCCCCVV

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 4 Motif ID: 95 Motif name: rmATGCTAww

Original motif     Consensus sequence: DHATGCTADH Reverse complement motif     Consensus sequence: HDTAGCATHD

Best Matches for Significant Motif ID 95 (Highest to Lowest)

Dataset #: 4
Motif ID: 91
Motif name: wtATTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.00863735

Alignment:
DHATTTTAWH
DHATGCTADH

Original motif     Consensus sequence: DHATTTTAWH Reverse complement motif     Consensus sequence: HWTAAAATHD

Dataset #: 4
Motif ID: 115
Motif name: ysCmAGCACwy
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0142021

Alignment:
DHGTGCTRGVH
DHATGCTADH-

Original motif     Consensus sequence: HVCMAGCACHH Reverse complement motif     Consensus sequence: DHGTGCTRGVH

Dataset #: 3
Motif ID: 80
Motif name: Pou5f1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0215325

Alignment:
ATTTGCATHACAAWG
HDTAGCATHD-----

Original motif     Consensus sequence: CWTTGTHATGCAAAT Reverse complement motif     Consensus sequence: ATTTGCATHACAAWG

Dataset #: 4
Motif ID: 123
Motif name: asMAAGCTTKst
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0234838

Alignment:
HBCAAGCTTGVD
-DHATGCTADH-

Original motif     Consensus sequence: HBCAAGCTTGVD Reverse complement motif     Consensus sequence: DVCAAGCTTGBH

Dataset #: 4
Motif ID: 93
Motif name: cmCARCACTwr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0266703

Alignment:
VHAGTGCTGHB
DHATGCTADH-

Original motif     Consensus sequence: BHCAGCACTHV Reverse complement motif     Consensus sequence: VHAGTGCTGHB

Dataset #: 4 Motif ID: 105 Motif name: ccGCAGCCss

Original motif     Consensus sequence: VCGCAGCCBB Reverse complement motif     Consensus sequence: BBGGCTGCGV

Best Matches for Significant Motif ID 105 (Highest to Lowest)

Dataset #: 4
Motif ID: 126
Motif name: yvTGCAGsCAcg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0

Alignment:
VBTGSCTGCAVB
-BBGGCTGCGV-

Original motif     Consensus sequence: BVTGCAGSCABV Reverse complement motif     Consensus sequence: VBTGSCTGCAVB

Dataset #: 4
Motif ID: 103
Motif name: csCCaGCTCCCgs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0101194

Alignment:
BVGGGAGCTGGBB
BBGGCTGCGV---

Original motif     Consensus sequence: BBCCAGCTCCCVB Reverse complement motif     Consensus sequence: BVGGGAGCTGGBB

Dataset #: 4
Motif ID: 102
Motif name: ssCkGGYCCCsg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0260007

Alignment:
BBCKGGCCCCVV
BBGGCTGCGV--

Original motif     Consensus sequence: BBCKGGCCCCVV Reverse complement motif     Consensus sequence: VVGGGGCCRGBB

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0296738

Alignment:
HBYGAGCTGGBB
--BBGGCTGCGV

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 4
Motif ID: 116
Motif name: dyCTGCyTCyc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0303133

Alignment:
DHCTGCYTCHB
-BBGGCTGCGV

Original motif     Consensus sequence: DHCTGCYTCHB Reverse complement motif     Consensus sequence: BHGAKGCAGHH

Dataset #: 1 Motif ID: 24 Motif name: Motif 24

Original motif     Consensus sequence: CACGB Reverse complement motif     Consensus sequence: BCGTG

Best Matches for Significant Motif ID 24 (Highest to Lowest)

Dataset #: 2
Motif ID: 56
Motif name: Motif 56
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 5
Similarity score: 0

Alignment:
CACGGA
CACGB-

Original motif     Consensus sequence: CACGGA Reverse complement motif     Consensus sequence: TCCGTG

Dataset #: 4
Motif ID: 115
Motif name: ysCmAGCACwy
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 5
Similarity score: 0.0186397

Alignment:
DHGTGCTRGVH
BCGTG------

Original motif     Consensus sequence: HVCMAGCACHH Reverse complement motif     Consensus sequence: DHGTGCTRGVH

Dataset #: 4
Motif ID: 107
Motif name: crCGyGCRcg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 5
Similarity score: 0.019278

Alignment:
CGCGTGCACG
-BCGTG----

Original motif     Consensus sequence: CGCGTGCACG Reverse complement motif     Consensus sequence: CGTGCACGCG

Dataset #: 1
Motif ID: 12
Motif name: Motif 12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 5
Similarity score: 0.0246242

Alignment:
GCACACAY
---CACGB

Original motif     Consensus sequence: GCACACAY Reverse complement motif     Consensus sequence: MTGTGTGC

Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 5
Similarity score: 0.0336642

Alignment:
TSTSTGTG
---BCGTG

Original motif     Consensus sequence: CACASASA Reverse complement motif     Consensus sequence: TSTSTGTG

Dataset #: 1 Motif ID: 25 Motif name: Motif 25

Original motif     Consensus sequence: TTTAWW Reverse complement motif     Consensus sequence: WWTAAA

Best Matches for Significant Motif ID 25 (Highest to Lowest)

Dataset #: 4
Motif ID: 91
Motif name: wtATTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0116421

Alignment:
HWTAAAATHD
WWTAAA----

Original motif     Consensus sequence: DHATTTTAWH Reverse complement motif     Consensus sequence: HWTAAAATHD

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0118254

Alignment:
DHATKTTTAHH
-----TTTAWW

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 3
Motif ID: 70
Motif name: Foxq1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0158082

Alignment:
HATTGTTTATW
-----TTTAWW

Original motif     Consensus sequence: HATTGTTTATW Reverse complement motif     Consensus sequence: WATAAACAATH

Dataset #: 1
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0300892

Alignment:
AWATAMA
WWTAAA-

Original motif     Consensus sequence: AWATAMA Reverse complement motif     Consensus sequence: TYTATWT

Dataset #: 2
Motif ID: 55
Motif name: Motif 55
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0307675

Alignment:
TTTAAAA
WWTAAA-

Original motif     Consensus sequence: TTTAAAA Reverse complement motif     Consensus sequence: TTTTAAA

Dataset #: 4 Motif ID: 109 Motif name: aaCAAAAACaa

Original motif     Consensus sequence: HHCAAAAACHH Reverse complement motif     Consensus sequence: HHGTTTTTGHH

Best Matches for Significant Motif ID 109 (Highest to Lowest)

Dataset #: 4
Motif ID: 89
Motif name: aaACAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.00652588

Alignment:
BHGTTTTGTTT
HHGTTTTTGHH

Original motif     Consensus sequence: AAACAAAACHV Reverse complement motif     Consensus sequence: BHGTTTTGTTT

Dataset #: 4
Motif ID: 117
Motif name: yaCATAYACay
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0113253

Alignment:
DTGTGTATGBD
HHGTTTTTGHH

Original motif     Consensus sequence: HVCATACACAH Reverse complement motif     Consensus sequence: DTGTGTATGBD

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0251184

Alignment:
DHATKTTTAHH
HHGTTTTTGHH

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 3
Motif ID: 75
Motif name: FOXF2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0278186

Alignment:
BHADSGTAAACAAD
--HHCAAAAACHH-

Original motif     Consensus sequence: BHADSGTAAACAAD Reverse complement motif     Consensus sequence: DTTGTTTACSBTBB

Dataset #: 3
Motif ID: 67
Motif name: FOXI1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0320335

Alignment:
KBDTRTTTRTTT
-HHGTTTTTGHH

Original motif     Consensus sequence: KBDTRTTTRTTT Reverse complement motif     Consensus sequence: AAAMAAAMADBY


Best Matches for Each Motif (Highest to Lowest)

Dataset #: 1 Motif ID: 1 Motif name: Motif 1

Original motif     Consensus sequence: AAAAAMAA Reverse complement motif     Consensus sequence: TTYTTTTT

Best Matches for Motif ID 1 (Highest to Lowest)

Dataset #: 2
Motif ID: 60
Motif name: Motif 60
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0315879

Alignment:
AADAAAAMAAAAAM
--AAAAAMAA----

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0375279

Alignment:
AAASAAAA
AAAAAMAA

Original motif     Consensus sequence: AAASAAAA Reverse complement motif     Consensus sequence: TTTTSTTT

Dataset #: 4
Motif ID: 109
Motif name: aaCAAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0446212

Alignment:
HHCAAAAACHH
---AAAAAMAA

Original motif     Consensus sequence: HHCAAAAACHH Reverse complement motif     Consensus sequence: HHGTTTTTGHH

Dataset #: 3
Motif ID: 67
Motif name: FOXI1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0453228

Alignment:
AAAMAAAMADBY
--AAAAAMAA--

Original motif     Consensus sequence: KBDTRTTTRTTT Reverse complement motif     Consensus sequence: AAAMAAAMADBY

Dataset #: 4
Motif ID: 114
Motif name: awAACAcAAwa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0467797

Alignment:
DDAACACAADV
-AAAAAMAA--

Original motif     Consensus sequence: DDAACACAADV Reverse complement motif     Consensus sequence: BDTTGTGTTDD

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0570668

Alignment:
DHATKTTTAHH
TTYTTTTT---

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 1 Motif ID: 2 Motif name: Motif 2

Original motif     Consensus sequence: ACACACAC Reverse complement motif     Consensus sequence: GTGTGTGT

Best Matches for Motif ID 2 (Highest to Lowest)

Dataset #: 2
Motif ID: 58
Motif name: Motif 58
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0337866

Alignment:
CACACACACACACA
-ACACACAC-----

Original motif     Consensus sequence: CACACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTGTG

Dataset #: 4
Motif ID: 117
Motif name: yaCATAYACay
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0556866

Alignment:
DTGTGTATGBD
--GTGTGTGT-

Original motif     Consensus sequence: HVCATACACAH Reverse complement motif     Consensus sequence: DTGTGTATGBD

Dataset #: 1
Motif ID: 12
Motif name: Motif 12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0626247

Alignment:
GCACACAY
ACACACAC

Original motif     Consensus sequence: GCACACAY Reverse complement motif     Consensus sequence: MTGTGTGC

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0696577

Alignment:
AAACAAAC
ACACACAC

Original motif     Consensus sequence: AAACAAAC Reverse complement motif     Consensus sequence: GTTTGTTT

Dataset #: 1
Motif ID: 37
Motif name: Motif 37
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.07313

Alignment:
GYATGTGY
GTGTGTGT

Original motif     Consensus sequence: GYATGTGY Reverse complement motif     Consensus sequence: KCACATKC

Dataset #: 1 Motif ID: 3 Motif name: Motif 3

Original motif     Consensus sequence: AWATAMA Reverse complement motif     Consensus sequence: TYTATWT

Best Matches for Motif ID 3 (Highest to Lowest)

Dataset #: 1
Motif ID: 1
Motif name: Motif 1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.00716822

Alignment:
AAAAAMAA
AWATAMA-

Original motif     Consensus sequence: AAAAAMAA Reverse complement motif     Consensus sequence: TTYTTTTT

Dataset #: 1
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.021456

Alignment:
AGATAAAR
AWATAMA-

Original motif     Consensus sequence: AGATAAAR Reverse complement motif     Consensus sequence: KTTTATCT

Dataset #: 3
Motif ID: 67
Motif name: FOXI1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0260643

Alignment:
KBDTRTTTRTTT
-----TYTATWT

Original motif     Consensus sequence: KBDTRTTTRTTT Reverse complement motif     Consensus sequence: AAAMAAAMADBY

Dataset #: 2
Motif ID: 60
Motif name: Motif 60
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0.031739

Alignment:
YTTTTTRTTTTDTT
---TYTATWT----

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Dataset #: 4
Motif ID: 90
Motif name: ymTACATAyw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.034879

Alignment:
DBTATGTAHH
TYTATWT---

Original motif     Consensus sequence: HHTACATABD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 1 Motif ID: 4 Motif name: Motif 4

Original motif     Consensus sequence: GAGRMAGR Reverse complement motif     Consensus sequence: KCTRMCTC

Best Matches for Motif ID 4 (Highest to Lowest)

Dataset #: 4
Motif ID: 116
Motif name: dyCTGCyTCyc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0229288

Alignment:
DHCTGCYTCHB
-KCTRMCTC--

Original motif     Consensus sequence: DHCTGCYTCHB Reverse complement motif     Consensus sequence: BHGAKGCAGHH

Dataset #: 4
Motif ID: 113
Motif name: htCTGyKTCbt
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0339962

Alignment:
HVGAAMCAGVH
--GAGRMAGR-

Original motif     Consensus sequence: HBCTGYTTCBH Reverse complement motif     Consensus sequence: HVGAAMCAGVH

Dataset #: 4
Motif ID: 112
Motif name: ctGAGTkTGAgg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0422491

Alignment:
HHTCARACTCVV
--KCTRMCTC--

Original motif     Consensus sequence: VBGAGTKTGADD Reverse complement motif     Consensus sequence: HHTCARACTCVV

Dataset #: 4
Motif ID: 121
Motif name: ctGAGTCATCkb
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0508307

Alignment:
BHGATGACTCDD
--KCTRMCTC--

Original motif     Consensus sequence: HDGAGTCATCDB Reverse complement motif     Consensus sequence: BHGATGACTCDD

Dataset #: 1
Motif ID: 18
Motif name: Motif 18
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0519824

Alignment:
GRRAGAGA
GAGRMAGR

Original motif     Consensus sequence: GRRAGAGA Reverse complement motif     Consensus sequence: TCTCTMKC

Dataset #: 1 Motif ID: 5 Motif name: Motif 5

Original motif     Consensus sequence: AAASAAAA Reverse complement motif     Consensus sequence: TTTTSTTT

Best Matches for Motif ID 5 (Highest to Lowest)

Dataset #: 2
Motif ID: 60
Motif name: Motif 60
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0229557

Alignment:
AADAAAAMAAAAAM
----AAASAAAA--

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Dataset #: 1
Motif ID: 1
Motif name: Motif 1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0330694

Alignment:
TTYTTTTT
TTTTSTTT

Original motif     Consensus sequence: AAAAAMAA Reverse complement motif     Consensus sequence: TTYTTTTT

Dataset #: 4
Motif ID: 89
Motif name: aaACAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0345209

Alignment:
BHGTTTTGTTT
---TTTTSTTT

Original motif     Consensus sequence: AAACAAAACHV Reverse complement motif     Consensus sequence: BHGTTTTGTTT

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0346745

Alignment:
AAACAAAC
AAASAAAA

Original motif     Consensus sequence: AAACAAAC Reverse complement motif     Consensus sequence: GTTTGTTT

Dataset #: 3
Motif ID: 65
Motif name: Foxd3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0440489

Alignment:
AAAHAAACAWTC
AAASAAAA----

Original motif     Consensus sequence: GAWTGTTTDTTT Reverse complement motif     Consensus sequence: AAAHAAACAWTC

Dataset #: 1 Motif ID: 6 Motif name: Motif 6

Original motif     Consensus sequence: CCCASCMC Reverse complement motif     Consensus sequence: GYGSTGGG

Best Matches for Motif ID 6 (Highest to Lowest)

Dataset #: 1
Motif ID: 22
Motif name: Motif 22
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.00727797

Alignment:
MCCACCAC
CCCASCMC

Original motif     Consensus sequence: GTGGTGGY Reverse complement motif     Consensus sequence: MCCACCAC

Dataset #: 4
Motif ID: 115
Motif name: ysCmAGCACwy
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0212781

Alignment:
DHGTGCTRGVH
--GYGSTGGG-

Original motif     Consensus sequence: HVCMAGCACHH Reverse complement motif     Consensus sequence: DHGTGCTRGVH

Dataset #: 4
Motif ID: 111
Motif name: ccCCmCaCCCCcc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0266863

Alignment:
HBCCCCACCCCBH
---CCCASCMC--

Original motif     Consensus sequence: HBCCCCACCCCBH Reverse complement motif     Consensus sequence: DBGGGGTGGGGBD

Dataset #: 1
Motif ID: 42
Motif name: Motif 42
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.030487

Alignment:
GTTCTKGG
GYGSTGGG

Original motif     Consensus sequence: CCYAGAAC Reverse complement motif     Consensus sequence: GTTCTKGG

Dataset #: 4
Motif ID: 93
Motif name: cmCARCACTwr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.030511

Alignment:
BHCAGCACTHV
CCCASCMC---

Original motif     Consensus sequence: BHCAGCACTHV Reverse complement motif     Consensus sequence: VHAGTGCTGHB

Dataset #: 1 Motif ID: 7 Motif name: Motif 7

Original motif     Consensus sequence: CACASASA Reverse complement motif     Consensus sequence: TSTSTGTG

Best Matches for Motif ID 7 (Highest to Lowest)

Dataset #: 2
Motif ID: 58
Motif name: Motif 58
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0271648

Alignment:
CACACACACACACA
CACASASA------

Original motif     Consensus sequence: CACACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTGTG

Dataset #: 1
Motif ID: 41
Motif name: Motif 41
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0361772

Alignment:
CTCAGARA
CACASASA

Original motif     Consensus sequence: CTCAGARA Reverse complement motif     Consensus sequence: TKTCTGAG

Dataset #: 4
Motif ID: 117
Motif name: yaCATAYACay
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0572872

Alignment:
DTGTGTATGBD
-TSTSTGTG--

Original motif     Consensus sequence: HVCATACACAH Reverse complement motif     Consensus sequence: DTGTGTATGBD

Dataset #: 4
Motif ID: 118
Motif name: yrCACATGCATGTGyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0627214

Alignment:
HVCACATGCATGTGBD
--CACASASA------

Original motif     Consensus sequence: HVCACATGCATGTGBD Reverse complement motif     Consensus sequence: DVCACATGCATGTGBH

Dataset #: 4
Motif ID: 114
Motif name: awAACAcAAwa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0715956

Alignment:
BDTTGTGTTDD
-TSTSTGTG--

Original motif     Consensus sequence: DDAACACAADV Reverse complement motif     Consensus sequence: BDTTGTGTTDD

Dataset #: 1 Motif ID: 8 Motif name: Motif 8

Original motif     Consensus sequence: CTGGCYTY Reverse complement motif     Consensus sequence: KAKGCCAG

Best Matches for Motif ID 8 (Highest to Lowest)

Dataset #: 4
Motif ID: 97
Motif name: sgArGCCACg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0352649

Alignment:
SGARGCCACG
-KAKGCCAG-

Original motif     Consensus sequence: SGARGCCACG Reverse complement motif     Consensus sequence: CGTGGCKTCS

Dataset #: 4
Motif ID: 92
Motif name: cgAKGyCAcg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0406315

Alignment:
CGAGGYCACV
-KAKGCCAG-

Original motif     Consensus sequence: CGAGGYCACV Reverse complement motif     Consensus sequence: VGTGMCCTCG

Dataset #: 1
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0419581

Alignment:
CTGCCTKY
CTGGCYTY

Original motif     Consensus sequence: CTGCCTKY Reverse complement motif     Consensus sequence: KRAGGCAG

Dataset #: 1
Motif ID: 31
Motif name: Motif 31
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0519508

Alignment:
GAGSWCAG
KAKGCCAG

Original motif     Consensus sequence: CTGWSCTC Reverse complement motif     Consensus sequence: GAGSWCAG

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0648749

Alignment:
CTGDGTTC
CTGGCYTY

Original motif     Consensus sequence: CTGDGTTC Reverse complement motif     Consensus sequence: GAACDCAG

Dataset #: 1 Motif ID: 9 Motif name: Motif 9

Original motif     Consensus sequence: TTTWWAAA Reverse complement motif     Consensus sequence: TTTWWAAA

Best Matches for Motif ID 9 (Highest to Lowest)

Dataset #: 4
Motif ID: 120
Motif name: wtTTTwAAAaw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0

Alignment:
HHTTTWAAADD
--TTTWWAAA-

Original motif     Consensus sequence: HHTTTWAAADD Reverse complement motif     Consensus sequence: DDTTTWAAAHH

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0472911

Alignment:
HHTAAARATHD
TTTWWAAA---

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 3
Motif ID: 62
Motif name: TBP
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0552987

Alignment:
STATAAAWRVVVVBV
-TTTWWAAA------

Original motif     Consensus sequence: STATAAAWRVVVVBV Reverse complement motif     Consensus sequence: VBVVVVMWTTTATAS

Dataset #: 3
Motif ID: 61
Motif name: MEF2A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0641646

Alignment:
CTATTTWTAG
-TTTWWAAA-

Original motif     Consensus sequence: CTATTTWTAG Reverse complement motif     Consensus sequence: CTAWAAATAG

Dataset #: 4
Motif ID: 91
Motif name: wtATTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0724871

Alignment:
DHATTTTAWH
--TTTWWAAA

Original motif     Consensus sequence: DHATTTTAWH Reverse complement motif     Consensus sequence: HWTAAAATHD

Dataset #: 1 Motif ID: 10 Motif name: Motif 10

Original motif     Consensus sequence: HTACATA Reverse complement motif     Consensus sequence: TATGTAD

Best Matches for Motif ID 10 (Highest to Lowest)

Dataset #: 4
Motif ID: 90
Motif name: ymTACATAyw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0

Alignment:
HHTACATABD
-HTACATA--

Original motif     Consensus sequence: HHTACATABD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 3
Motif ID: 69
Motif name: NKX3-1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0460238

Alignment:
TAAGTAT
TATGTAD

Original motif     Consensus sequence: ATACTTA Reverse complement motif     Consensus sequence: TAAGTAT

Dataset #: 4
Motif ID: 114
Motif name: awAACAcAAwa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0619118

Alignment:
BDTTGTGTTDD
---TATGTAD-

Original motif     Consensus sequence: DDAACACAADV Reverse complement motif     Consensus sequence: BDTTGTGTTDD

Dataset #: 3
Motif ID: 63
Motif name: FOXL1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0663597

Alignment:
WHDAHATA
-HTACATA

Original motif     Consensus sequence: WHDAHATA Reverse complement motif     Consensus sequence: TATDTDHW

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0688346

Alignment:
HHTAAARATHD
-HTACATA---

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 1 Motif ID: 11 Motif name: Motif 11

Original motif     Consensus sequence: CTGDGTTC Reverse complement motif     Consensus sequence: GAACDCAG

Best Matches for Motif ID 11 (Highest to Lowest)

Dataset #: 1
Motif ID: 31
Motif name: Motif 31
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0558383

Alignment:
CTGWSCTC
CTGDGTTC

Original motif     Consensus sequence: CTGWSCTC Reverse complement motif     Consensus sequence: GAGSWCAG

Dataset #: 1
Motif ID: 12
Motif name: Motif 12
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0780567

Alignment:
MTGTGTGC
CTGDGTTC

Original motif     Consensus sequence: GCACACAY Reverse complement motif     Consensus sequence: MTGTGTGC

Dataset #: 1
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0849877

Alignment:
KRAGGCAG
GAACDCAG

Original motif     Consensus sequence: CTGCCTKY Reverse complement motif     Consensus sequence: KRAGGCAG

Dataset #: 1
Motif ID: 8
Motif name: Motif 8
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0874939

Alignment:
CTGGCYTY
CTGDGTTC

Original motif     Consensus sequence: CTGGCYTY Reverse complement motif     Consensus sequence: KAKGCCAG

Dataset #: 4
Motif ID: 114
Motif name: awAACAcAAwa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0916924

Alignment:
DDAACACAADV
-GAACDCAG--

Original motif     Consensus sequence: DDAACACAADV Reverse complement motif     Consensus sequence: BDTTGTGTTDD

Dataset #: 1 Motif ID: 12 Motif name: Motif 12

Original motif     Consensus sequence: GCACACAY Reverse complement motif     Consensus sequence: MTGTGTGC

Best Matches for Motif ID 12 (Highest to Lowest)

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0388776

Alignment:
ACACACAC
GCACACAY

Original motif     Consensus sequence: ACACACAC Reverse complement motif     Consensus sequence: GTGTGTGT

Dataset #: 2
Motif ID: 58
Motif name: Motif 58
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0509001

Alignment:
CACACACACACACA
-GCACACAY-----

Original motif     Consensus sequence: CACACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTGTG

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0543096

Alignment:
GAACDCAG
GCACACAY

Original motif     Consensus sequence: CTGDGTTC Reverse complement motif     Consensus sequence: GAACDCAG

Dataset #: 4
Motif ID: 126
Motif name: yvTGCAGsCAcg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0573852

Alignment:
BVTGCAGSCABV
---GCACACAY-

Original motif     Consensus sequence: BVTGCAGSCABV Reverse complement motif     Consensus sequence: VBTGSCTGCAVB

Dataset #: 1
Motif ID: 37
Motif name: Motif 37
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0626478

Alignment:
KCACATKC
GCACACAY

Original motif     Consensus sequence: GYATGTGY Reverse complement motif     Consensus sequence: KCACATKC

Dataset #: 1 Motif ID: 13 Motif name: Motif 13

Original motif     Consensus sequence: GGAAGSAR Reverse complement motif     Consensus sequence: MTSCTTCC

Best Matches for Motif ID 13 (Highest to Lowest)

Dataset #: 1
Motif ID: 17
Motif name: Motif 17
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0653924

Alignment:
GGGAGGRR
GGAAGSAR

Original motif     Consensus sequence: GGGAGGRR Reverse complement motif     Consensus sequence: MMCCTCCC

Dataset #: 4
Motif ID: 116
Motif name: dyCTGCyTCyc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0796555

Alignment:
DHCTGCYTCHB
--MTSCTTCC-

Original motif     Consensus sequence: DHCTGCYTCHB Reverse complement motif     Consensus sequence: BHGAKGCAGHH

Dataset #: 1
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0803708

Alignment:
RGARGAAA
GGAAGSAR

Original motif     Consensus sequence: RGARGAAA Reverse complement motif     Consensus sequence: TTTCKTCK

Dataset #: 4
Motif ID: 113
Motif name: htCTGyKTCbt
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0857132

Alignment:
HBCTGYTTCBH
--MTSCTTCC-

Original motif     Consensus sequence: HBCTGYTTCBH Reverse complement motif     Consensus sequence: HVGAAMCAGVH

Dataset #: 1
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0948401

Alignment:
KRAGGCAG
GGAAGSAR

Original motif     Consensus sequence: CTGCCTKY Reverse complement motif     Consensus sequence: KRAGGCAG

Dataset #: 1 Motif ID: 14 Motif name: Motif 14

Original motif     Consensus sequence: KAAAATR Reverse complement motif     Consensus sequence: MATTTTY

Best Matches for Motif ID 14 (Highest to Lowest)

Dataset #: 4
Motif ID: 91
Motif name: wtATTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0107308

Alignment:
HWTAAAATHD
--KAAAATR-

Original motif     Consensus sequence: DHATTTTAWH Reverse complement motif     Consensus sequence: HWTAAAATHD

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0228401

Alignment:
DHATKTTTAHH
-MATTTTY---

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 1
Motif ID: 44
Motif name: Motif 44
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0324742

Alignment:
CATTTCT
MATTTTY

Original motif     Consensus sequence: AGAAATG Reverse complement motif     Consensus sequence: CATTTCT

Dataset #: 3
Motif ID: 87
Motif name: SOX9
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0488777

Alignment:
CMATTGTTH
-MATTTTY-

Original motif     Consensus sequence: DAACAATRG Reverse complement motif     Consensus sequence: CMATTGTTH

Dataset #: 4
Motif ID: 109
Motif name: aaCAAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0510773

Alignment:
HHGTTTTTGHH
-MATTTTY---

Original motif     Consensus sequence: HHCAAAAACHH Reverse complement motif     Consensus sequence: HHGTTTTTGHH

Dataset #: 1 Motif ID: 15 Motif name: Motif 15

Original motif     Consensus sequence: AGCCCWGG Reverse complement motif     Consensus sequence: CCWGGGCT

Best Matches for Motif ID 15 (Highest to Lowest)

Dataset #: 1
Motif ID: 51
Motif name: Motif 51
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0387232

Alignment:
AGAGCWGG
AGCCCWGG

Original motif     Consensus sequence: AGAGCWGG Reverse complement motif     Consensus sequence: CCWGCTCT

Dataset #: 4
Motif ID: 104
Motif name: cgCCCwGGScsg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0422017

Alignment:
VDCCCWGGGCBB
AGCCCWGG----

Original motif     Consensus sequence: VDCCCWGGGCBB Reverse complement motif     Consensus sequence: BBGCCCWGGGHV

Dataset #: 4
Motif ID: 122
Motif name: hsCCAGGCCTGGsr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0482193

Alignment:
HVCCAGGCCTGGBD
--CCWGGGCT----

Original motif     Consensus sequence: HVCCAGGCCTGGBD Reverse complement motif     Consensus sequence: HBCCAGGCCTGGVD

Dataset #: 4
Motif ID: 124
Motif name: cswGGGCCCwsg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0580747

Alignment:
BBWGGGCCCWVV
----AGCCCWGG

Original motif     Consensus sequence: VVWGGGCCCWBB Reverse complement motif     Consensus sequence: BBWGGGCCCWVV

Dataset #: 4
Motif ID: 127
Motif name: rryCAGGGAyw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0593634

Alignment:
DDYCAGGGAHD
--CCWGGGCT-

Original motif     Consensus sequence: DDYCAGGGAHD Reverse complement motif     Consensus sequence: DHTCCCTGMDD

Dataset #: 1 Motif ID: 16 Motif name: Motif 16

Original motif     Consensus sequence: GAGCCATC Reverse complement motif     Consensus sequence: GATGGCTC

Best Matches for Motif ID 16 (Highest to Lowest)

Dataset #: 4
Motif ID: 121
Motif name: ctGAGTCATCkb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0217603

Alignment:
HDGAGTCATCDB
--GAGCCATC--

Original motif     Consensus sequence: HDGAGTCATCDB Reverse complement motif     Consensus sequence: BHGATGACTCDD

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0643454

Alignment:
KCTRMCTC
GATGGCTC

Original motif     Consensus sequence: GAGRMAGR Reverse complement motif     Consensus sequence: KCTRMCTC

Dataset #: 4
Motif ID: 116
Motif name: dyCTGCyTCyc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0716659

Alignment:
BHGAKGCAGHH
--GAGCCATC-

Original motif     Consensus sequence: DHCTGCYTCHB Reverse complement motif     Consensus sequence: BHGAKGCAGHH

Dataset #: 4
Motif ID: 124
Motif name: cswGGGCCCwsg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0726629

Alignment:
BBWGGGCCCWVV
---GAGCCATC-

Original motif     Consensus sequence: VVWGGGCCCWBB Reverse complement motif     Consensus sequence: BBWGGGCCCWVV

Dataset #: 4
Motif ID: 97
Motif name: sgArGCCACg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0739514

Alignment:
CGTGGCKTCS
GATGGCTC--

Original motif     Consensus sequence: SGARGCCACG Reverse complement motif     Consensus sequence: CGTGGCKTCS

Dataset #: 1 Motif ID: 17 Motif name: Motif 17

Original motif     Consensus sequence: GGGAGGRR Reverse complement motif     Consensus sequence: MMCCTCCC

Best Matches for Motif ID 17 (Highest to Lowest)

Dataset #: 1
Motif ID: 13
Motif name: Motif 13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0153924

Alignment:
GGAAGSAR
GGGAGGRR

Original motif     Consensus sequence: GGAAGSAR Reverse complement motif     Consensus sequence: MTSCTTCC

Dataset #: 4
Motif ID: 111
Motif name: ccCCmCaCCCCcc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0180858

Alignment:
HBCCCCACCCCBH
--MMCCTCCC---

Original motif     Consensus sequence: HBCCCCACCCCBH Reverse complement motif     Consensus sequence: DBGGGGTGGGGBD

Dataset #: 4
Motif ID: 103
Motif name: csCCaGCTCCCgs
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0339203

Alignment:
BBCCAGCTCCCVB
---MMCCTCCC--

Original motif     Consensus sequence: BBCCAGCTCCCVB Reverse complement motif     Consensus sequence: BVGGGAGCTGGBB

Dataset #: 4
Motif ID: 110
Motif name: cmCCACACCcm
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0373897

Alignment:
HVCCACACCBV
MMCCTCCC---

Original motif     Consensus sequence: HVCCACACCBV Reverse complement motif     Consensus sequence: VBGGTGTGGBD

Dataset #: 4
Motif ID: 99
Motif name: graGGGGGArr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0403428

Alignment:
DVAGGGGGADD
---GGGAGGRR

Original motif     Consensus sequence: DVAGGGGGADD Reverse complement motif     Consensus sequence: HDTCCCCCTVH

Dataset #: 1 Motif ID: 18 Motif name: Motif 18

Original motif     Consensus sequence: GRRAGAGA Reverse complement motif     Consensus sequence: TCTCTMKC

Best Matches for Motif ID 18 (Highest to Lowest)

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0524813

Alignment:
GAGRMAGR
GRRAGAGA

Original motif     Consensus sequence: GAGRMAGR Reverse complement motif     Consensus sequence: KCTRMCTC

Dataset #: 4
Motif ID: 113
Motif name: htCTGyKTCbt
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0543958

Alignment:
HVGAAMCAGVH
--GRRAGAGA-

Original motif     Consensus sequence: HBCTGYTTCBH Reverse complement motif     Consensus sequence: HVGAAMCAGVH

Dataset #: 1
Motif ID: 17
Motif name: Motif 17
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0594801

Alignment:
GGGAGGRR
GRRAGAGA

Original motif     Consensus sequence: GGGAGGRR Reverse complement motif     Consensus sequence: MMCCTCCC

Dataset #: 2
Motif ID: 59
Motif name: Motif 59
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0602419

Alignment:
CTBCCTCHSYCYCC
---TCTCTMKC---

Original motif     Consensus sequence: CTBCCTCHSYCYCC Reverse complement motif     Consensus sequence: GGMGKSHGAGGBAG

Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0675926

Alignment:
CACASASA
GRRAGAGA

Original motif     Consensus sequence: CACASASA Reverse complement motif     Consensus sequence: TSTSTGTG

Dataset #: 1 Motif ID: 19 Motif name: Motif 19

Original motif     Consensus sequence: CCTGGARC Reverse complement motif     Consensus sequence: GKTCCAGG

Best Matches for Motif ID 19 (Highest to Lowest)

Dataset #: 1
Motif ID: 42
Motif name: Motif 42
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0610815

Alignment:
CCYAGAAC
CCTGGARC

Original motif     Consensus sequence: CCYAGAAC Reverse complement motif     Consensus sequence: GTTCTKGG

Dataset #: 3
Motif ID: 84
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0814394

Alignment:
AAAGGTCAAAGGTCAAC
---GKTCCAGG------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 1
Motif ID: 20
Motif name: Motif 20
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0952394

Alignment:
ATTAMAGG
GKTCCAGG

Original motif     Consensus sequence: ATTAMAGG Reverse complement motif     Consensus sequence: CCTYTAAT

Dataset #: 4
Motif ID: 102
Motif name: ssCkGGYCCCsg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0966701

Alignment:
VVGGGGCCRGBB
---GKTCCAGG-

Original motif     Consensus sequence: BBCKGGCCCCVV Reverse complement motif     Consensus sequence: VVGGGGCCRGBB

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0972534

Alignment:
CCWGGGCT
CCTGGARC

Original motif     Consensus sequence: AGCCCWGG Reverse complement motif     Consensus sequence: CCWGGGCT

Dataset #: 1 Motif ID: 20 Motif name: Motif 20

Original motif     Consensus sequence: ATTAMAGG Reverse complement motif     Consensus sequence: CCTYTAAT

Best Matches for Motif ID 20 (Highest to Lowest)

Dataset #: 3
Motif ID: 84
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0699525

Alignment:
GTTGACCTTTGACCTTT
-----CCTYTAAT----

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 1
Motif ID: 19
Motif name: Motif 19
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0931208

Alignment:
CCTGGARC
CCTYTAAT

Original motif     Consensus sequence: CCTGGARC Reverse complement motif     Consensus sequence: GKTCCAGG

Dataset #: 3
Motif ID: 66
Motif name: Lhx3
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0993275

Alignment:
BMWTAATTAATTW
---CCTYTAAT--

Original motif     Consensus sequence: WAATTAATTAWYB Reverse complement motif     Consensus sequence: BMWTAATTAATTW

Dataset #: 3
Motif ID: 83
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.100049

Alignment:
TGAMCTTTGMMCYT
---CCTYTAAT---

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.101957

Alignment:
HHTAAARATHD
ATTAMAGG---

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 1 Motif ID: 21 Motif name: Motif 21

Original motif     Consensus sequence: AAACAAAC Reverse complement motif     Consensus sequence: GTTTGTTT

Best Matches for Motif ID 21 (Highest to Lowest)

Dataset #: 2
Motif ID: 60
Motif name: Motif 60
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0392428

Alignment:
AADAAAAMAAAAAM
----AAACAAAC--

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Dataset #: 3
Motif ID: 67
Motif name: FOXI1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0439051

Alignment:
AAAMAAAMADBY
AAACAAAC----

Original motif     Consensus sequence: KBDTRTTTRTTT Reverse complement motif     Consensus sequence: AAAMAAAMADBY

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0458289

Alignment:
AAASAAAA
AAACAAAC

Original motif     Consensus sequence: AAASAAAA Reverse complement motif     Consensus sequence: TTTTSTTT

Dataset #: 3
Motif ID: 65
Motif name: Foxd3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0463073

Alignment:
GAWTGTTTDTTT
----GTTTGTTT

Original motif     Consensus sequence: GAWTGTTTDTTT Reverse complement motif     Consensus sequence: AAAHAAACAWTC

Dataset #: 4
Motif ID: 89
Motif name: aaACAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0522284

Alignment:
BHGTTTTGTTT
---GTTTGTTT

Original motif     Consensus sequence: AAACAAAACHV Reverse complement motif     Consensus sequence: BHGTTTTGTTT

Dataset #: 1 Motif ID: 22 Motif name: Motif 22

Original motif     Consensus sequence: GTGGTGGY Reverse complement motif     Consensus sequence: MCCACCAC

Best Matches for Motif ID 22 (Highest to Lowest)

Dataset #: 1
Motif ID: 6
Motif name: Motif 6
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0503283

Alignment:
GYGSTGGG
GTGGTGGY

Original motif     Consensus sequence: CCCASCMC Reverse complement motif     Consensus sequence: GYGSTGGG

Dataset #: 4
Motif ID: 115
Motif name: ysCmAGCACwy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0623778

Alignment:
HVCMAGCACHH
-MCCACCAC--

Original motif     Consensus sequence: HVCMAGCACHH Reverse complement motif     Consensus sequence: DHGTGCTRGVH

Dataset #: 4
Motif ID: 93
Motif name: cmCARCACTwr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0725856

Alignment:
BHCAGCACTHV
MCCACCAC---

Original motif     Consensus sequence: BHCAGCACTHV Reverse complement motif     Consensus sequence: VHAGTGCTGHB

Dataset #: 4
Motif ID: 101
Motif name: csCACCCCgg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0756613

Alignment:
HVCACCCCBB
MCCACCAC--

Original motif     Consensus sequence: HVCACCCCBB Reverse complement motif     Consensus sequence: BBGGGGTGVD

Dataset #: 4
Motif ID: 110
Motif name: cmCCACACCcm
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0823897

Alignment:
HVCCACACCBV
-MCCACCAC--

Original motif     Consensus sequence: HVCCACACCBV Reverse complement motif     Consensus sequence: VBGGTGTGGBD

Dataset #: 1 Motif ID: 23 Motif name: Motif 23

Original motif     Consensus sequence: MTSTGTA Reverse complement motif     Consensus sequence: TACASAR

Best Matches for Motif ID 23 (Highest to Lowest)

Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0172404

Alignment:
CACASASA
-TACASAR

Original motif     Consensus sequence: CACASASA Reverse complement motif     Consensus sequence: TSTSTGTG

Dataset #: 4
Motif ID: 90
Motif name: ymTACATAyw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0191193

Alignment:
HHTACATABD
--TACASAR-

Original motif     Consensus sequence: HHTACATABD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 1
Motif ID: 12
Motif name: Motif 12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.03188

Alignment:
GCACACAY
TACASAR-

Original motif     Consensus sequence: GCACACAY Reverse complement motif     Consensus sequence: MTGTGTGC

Dataset #: 4
Motif ID: 114
Motif name: awAACAcAAwa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 7
Similarity score: 0.0346685

Alignment:
DDAACACAADV
--TACASAR--

Original motif     Consensus sequence: DDAACACAADV Reverse complement motif     Consensus sequence: BDTTGTGTTDD

Dataset #: 3
Motif ID: 75
Motif name: FOXF2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 7
Similarity score: 0.0372723

Alignment:
BHADSGTAAACAAD
------TACASAR-

Original motif     Consensus sequence: BHADSGTAAACAAD Reverse complement motif     Consensus sequence: DTTGTTTACSBTBB

Dataset #: 1 Motif ID: 24 Motif name: Motif 24

Original motif     Consensus sequence: CACGB Reverse complement motif     Consensus sequence: BCGTG

Best Matches for Motif ID 24 (Highest to Lowest)

Dataset #: 2
Motif ID: 56
Motif name: Motif 56
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 5
Similarity score: 0

Alignment:
CACGGA
CACGB-

Original motif     Consensus sequence: CACGGA Reverse complement motif     Consensus sequence: TCCGTG

Dataset #: 4
Motif ID: 115
Motif name: ysCmAGCACwy
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 5
Similarity score: 0.0186397

Alignment:
DHGTGCTRGVH
BCGTG------

Original motif     Consensus sequence: HVCMAGCACHH Reverse complement motif     Consensus sequence: DHGTGCTRGVH

Dataset #: 4
Motif ID: 107
Motif name: crCGyGCRcg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 5
Similarity score: 0.019278

Alignment:
CGCGTGCACG
-BCGTG----

Original motif     Consensus sequence: CGCGTGCACG Reverse complement motif     Consensus sequence: CGTGCACGCG

Dataset #: 1
Motif ID: 12
Motif name: Motif 12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 5
Similarity score: 0.0246242

Alignment:
GCACACAY
---CACGB

Original motif     Consensus sequence: GCACACAY Reverse complement motif     Consensus sequence: MTGTGTGC

Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 5
Similarity score: 0.0336642

Alignment:
TSTSTGTG
---BCGTG

Original motif     Consensus sequence: CACASASA Reverse complement motif     Consensus sequence: TSTSTGTG

Dataset #: 1 Motif ID: 25 Motif name: Motif 25

Original motif     Consensus sequence: TTTAWW Reverse complement motif     Consensus sequence: WWTAAA

Best Matches for Motif ID 25 (Highest to Lowest)

Dataset #: 4
Motif ID: 91
Motif name: wtATTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0116421

Alignment:
HWTAAAATHD
WWTAAA----

Original motif     Consensus sequence: DHATTTTAWH Reverse complement motif     Consensus sequence: HWTAAAATHD

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0118254

Alignment:
DHATKTTTAHH
-----TTTAWW

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 3
Motif ID: 70
Motif name: Foxq1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0158082

Alignment:
HATTGTTTATW
-----TTTAWW

Original motif     Consensus sequence: HATTGTTTATW Reverse complement motif     Consensus sequence: WATAAACAATH

Dataset #: 1
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0300892

Alignment:
AWATAMA
WWTAAA-

Original motif     Consensus sequence: AWATAMA Reverse complement motif     Consensus sequence: TYTATWT

Dataset #: 2
Motif ID: 55
Motif name: Motif 55
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0307675

Alignment:
TTTAAAA
WWTAAA-

Original motif     Consensus sequence: TTTAAAA Reverse complement motif     Consensus sequence: TTTTAAA

Dataset #: 1 Motif ID: 26 Motif name: Motif 26

Original motif     Consensus sequence: RGARGAAA Reverse complement motif     Consensus sequence: TTTCKTCK

Best Matches for Motif ID 26 (Highest to Lowest)

Dataset #: 3
Motif ID: 71
Motif name: Evi1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0776207

Alignment:
TBTTATCTTMTCTT
---TTTCKTCK---

Original motif     Consensus sequence: AAGAYAAGATAABA Reverse complement motif     Consensus sequence: TBTTATCTTMTCTT

Dataset #: 1
Motif ID: 13
Motif name: Motif 13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0795772

Alignment:
GGAAGSAR
RGARGAAA

Original motif     Consensus sequence: GGAAGSAR Reverse complement motif     Consensus sequence: MTSCTTCC

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0833075

Alignment:
AAASAAAA
RGARGAAA

Original motif     Consensus sequence: AAASAAAA Reverse complement motif     Consensus sequence: TTTTSTTT

Dataset #: 4
Motif ID: 89
Motif name: aaACAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.087026

Alignment:
BHGTTTTGTTT
---TTTCKTCK

Original motif     Consensus sequence: AAACAAAACHV Reverse complement motif     Consensus sequence: BHGTTTTGTTT

Dataset #: 2
Motif ID: 60
Motif name: Motif 60
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0876612

Alignment:
YTTTTTRTTTTDTT
---TTTCKTCK---

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Dataset #: 1 Motif ID: 27 Motif name: Motif 27

Original motif     Consensus sequence: CTGCCTKY Reverse complement motif     Consensus sequence: KRAGGCAG

Best Matches for Motif ID 27 (Highest to Lowest)

Dataset #: 1
Motif ID: 39
Motif name: Motif 39
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0247901

Alignment:
CTGYCTGT
CTGCCTKY

Original motif     Consensus sequence: ACAGMCAG Reverse complement motif     Consensus sequence: CTGYCTGT

Dataset #: 4
Motif ID: 116
Motif name: dyCTGCyTCyc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0249073

Alignment:
BHGAKGCAGHH
-KRAGGCAG--

Original motif     Consensus sequence: DHCTGCYTCHB Reverse complement motif     Consensus sequence: BHGAKGCAGHH

Dataset #: 1
Motif ID: 8
Motif name: Motif 8
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0407877

Alignment:
CTGGCYTY
CTGCCTKY

Original motif     Consensus sequence: CTGGCYTY Reverse complement motif     Consensus sequence: KAKGCCAG

Dataset #: 4
Motif ID: 126
Motif name: yvTGCAGsCAcg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0601303

Alignment:
VBTGSCTGCAVB
-CTGCCTKY---

Original motif     Consensus sequence: BVTGCAGSCABV Reverse complement motif     Consensus sequence: VBTGSCTGCAVB

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0611983

Alignment:
GAACDCAG
KRAGGCAG

Original motif     Consensus sequence: CTGDGTTC Reverse complement motif     Consensus sequence: GAACDCAG

Dataset #: 1 Motif ID: 28 Motif name: Motif 28

Original motif     Consensus sequence: AVAGAAA Reverse complement motif     Consensus sequence: TTTCTVT

Best Matches for Motif ID 28 (Highest to Lowest)

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.034392

Alignment:
AAASAAAA
AVAGAAA-

Original motif     Consensus sequence: AAASAAAA Reverse complement motif     Consensus sequence: TTTTSTTT

Dataset #: 1
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0458576

Alignment:
AGATAAAR
AVAGAAA-

Original motif     Consensus sequence: AGATAAAR Reverse complement motif     Consensus sequence: KTTTATCT

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0461542

Alignment:
AAACAAAC
AVAGAAA-

Original motif     Consensus sequence: AAACAAAC Reverse complement motif     Consensus sequence: GTTTGTTT

Dataset #: 1
Motif ID: 18
Motif name: Motif 18
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.047492

Alignment:
TCTCTMKC
TTTCTVT-

Original motif     Consensus sequence: GRRAGAGA Reverse complement motif     Consensus sequence: TCTCTMKC

Dataset #: 4
Motif ID: 89
Motif name: aaACAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0.055017

Alignment:
AAACAAAACHV
AVAGAAA----

Original motif     Consensus sequence: AAACAAAACHV Reverse complement motif     Consensus sequence: BHGTTTTGTTT

Dataset #: 1 Motif ID: 29 Motif name: Motif 29

Original motif     Consensus sequence: CCMGCCCC Reverse complement motif     Consensus sequence: GGGGCYGG

Best Matches for Motif ID 29 (Highest to Lowest)

Dataset #: 4
Motif ID: 103
Motif name: csCCaGCTCCCgs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0420068

Alignment:
BVGGGAGCTGGBB
---GGGGCYGG--

Original motif     Consensus sequence: BBCCAGCTCCCVB Reverse complement motif     Consensus sequence: BVGGGAGCTGGBB

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0430311

Alignment:
BBCCAGCTCMBD
--CCMGCCCC--

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 4
Motif ID: 102
Motif name: ssCkGGYCCCsg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0462922

Alignment:
VVGGGGCCRGBB
--GGGGCYGG--

Original motif     Consensus sequence: BBCKGGCCCCVV Reverse complement motif     Consensus sequence: VVGGGGCCRGBB

Dataset #: 4
Motif ID: 111
Motif name: ccCCmCaCCCCcc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.051245

Alignment:
HBCCCCACCCCBH
---CCMGCCCC--

Original motif     Consensus sequence: HBCCCCACCCCBH Reverse complement motif     Consensus sequence: DBGGGGTGGGGBD

Dataset #: 4
Motif ID: 115
Motif name: ysCmAGCACwy
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0556862

Alignment:
HVCMAGCACHH
--CCMGCCCC-

Original motif     Consensus sequence: HVCMAGCACHH Reverse complement motif     Consensus sequence: DHGTGCTRGVH

Dataset #: 1 Motif ID: 30 Motif name: Motif 30

Original motif     Consensus sequence: CAGGARGM Reverse complement motif     Consensus sequence: YCMTCCTG

Best Matches for Motif ID 30 (Highest to Lowest)

Dataset #: 1
Motif ID: 47
Motif name: Motif 47
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0890875

Alignment:
CAGCAGCR
CAGGARGM

Original motif     Consensus sequence: KGCTGCTG Reverse complement motif     Consensus sequence: CAGCAGCR

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0957719

Alignment:
GAGRMAGR
CAGGARGM

Original motif     Consensus sequence: GAGRMAGR Reverse complement motif     Consensus sequence: KCTRMCTC

Dataset #: 4
Motif ID: 98
Motif name: myyCCCACmTGCmyr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0969866

Alignment:
HBCCCCACMTGCMHV
---YCMTCCTG----

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Dataset #: 4
Motif ID: 127
Motif name: rryCAGGGAyw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0975352

Alignment:
DDYCAGGGAHD
---CAGGARGM

Original motif     Consensus sequence: DDYCAGGGAHD Reverse complement motif     Consensus sequence: DHTCCCTGMDD

Dataset #: 4
Motif ID: 99
Motif name: graGGGGGArr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0989909

Alignment:
DVAGGGGGADD
-CAGGARGM--

Original motif     Consensus sequence: DVAGGGGGADD Reverse complement motif     Consensus sequence: HDTCCCCCTVH

Dataset #: 1 Motif ID: 31 Motif name: Motif 31

Original motif     Consensus sequence: CTGWSCTC Reverse complement motif     Consensus sequence: GAGSWCAG

Best Matches for Motif ID 31 (Highest to Lowest)

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.023129

Alignment:
GAACDCAG
GAGSWCAG

Original motif     Consensus sequence: CTGDGTTC Reverse complement motif     Consensus sequence: GAACDCAG

Dataset #: 1
Motif ID: 8
Motif name: Motif 8
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0418605

Alignment:
KAKGCCAG
GAGSWCAG

Original motif     Consensus sequence: CTGGCYTY Reverse complement motif     Consensus sequence: KAKGCCAG

Dataset #: 4
Motif ID: 92
Motif name: cgAKGyCAcg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0464751

Alignment:
VGTGMCCTCG
-CTGWSCTC-

Original motif     Consensus sequence: CGAGGYCACV Reverse complement motif     Consensus sequence: VGTGMCCTCG

Dataset #: 3
Motif ID: 84
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.0568298

Alignment:
AAAGGTCAAAGGTCAAC
--------GAGSWCAG-

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0705619

Alignment:
BBCCAGCTCMBD
---GAGSWCAG-

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 1 Motif ID: 32 Motif name: Motif 32

Original motif     Consensus sequence: AVATGGC Reverse complement motif     Consensus sequence: GCCATVT

Best Matches for Motif ID 32 (Highest to Lowest)

Dataset #: 4
Motif ID: 124
Motif name: cswGGGCCCwsg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.0595251

Alignment:
VVWGGGCCCWBB
AVATGGC-----

Original motif     Consensus sequence: VVWGGGCCCWBB Reverse complement motif     Consensus sequence: BBWGGGCCCWVV

Dataset #: 4
Motif ID: 121
Motif name: ctGAGTCATCkb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0676952

Alignment:
HDGAGTCATCDB
----GCCATVT-

Original motif     Consensus sequence: HDGAGTCATCDB Reverse complement motif     Consensus sequence: BHGATGACTCDD

Dataset #: 3
Motif ID: 84
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.0701366

Alignment:
AAAGGTCAAAGGTCAAC
-------AVATGGC---

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0.0704204

Alignment:
BBCCAGCTCMBD
-GCCATVT----

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 4
Motif ID: 98
Motif name: myyCCCACmTGCmyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0736077

Alignment:
HBCCCCACMTGCMHV
------AVATGGC--

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Dataset #: 1 Motif ID: 33 Motif name: Motif 33

Original motif     Consensus sequence: CMTTTCC Reverse complement motif     Consensus sequence: GGAAARG

Best Matches for Motif ID 33 (Highest to Lowest)

Dataset #: 1
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0542683

Alignment:
TSTTTCC
CMTTTCC

Original motif     Consensus sequence: GGAAASA Reverse complement motif     Consensus sequence: TSTTTCC

Dataset #: 1
Motif ID: 44
Motif name: Motif 44
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0667064

Alignment:
CATTTCT
CMTTTCC

Original motif     Consensus sequence: AGAAATG Reverse complement motif     Consensus sequence: CATTTCT

Dataset #: 4
Motif ID: 88
Motif name: ygCTyTTCsg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0693505

Alignment:
BCGAAMAGHH
-GGAAARG--

Original motif     Consensus sequence: HDCTYTTCGB Reverse complement motif     Consensus sequence: BCGAAMAGHH

Dataset #: 1
Motif ID: 38
Motif name: Motif 38
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0734352

Alignment:
GGAGMAGG
GGAAARG-

Original motif     Consensus sequence: CCTYCTCC Reverse complement motif     Consensus sequence: GGAGMAGG

Dataset #: 1
Motif ID: 13
Motif name: Motif 13
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0861393

Alignment:
GGAAGSAR
-GGAAARG

Original motif     Consensus sequence: GGAAGSAR Reverse complement motif     Consensus sequence: MTSCTTCC

Dataset #: 1 Motif ID: 34 Motif name: Motif 34

Original motif     Consensus sequence: ATATTTA Reverse complement motif     Consensus sequence: TAAATAT

Best Matches for Motif ID 34 (Highest to Lowest)

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0294375

Alignment:
DHATKTTTAHH
--ATATTTA--

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 3
Motif ID: 82
Motif name: HNF1B
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 7
Similarity score: 0.033217

Alignment:
GTTAAWKATTAA
--TAAATAT---

Original motif     Consensus sequence: TTAATRWTTAAC Reverse complement motif     Consensus sequence: GTTAAWKATTAA

Dataset #: 4
Motif ID: 90
Motif name: ymTACATAyw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0399459

Alignment:
DBTATGTAHH
-ATATTTA--

Original motif     Consensus sequence: HHTACATABD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 3
Motif ID: 61
Motif name: MEF2A
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0440271

Alignment:
CTAWAAATAG
---TAAATAT

Original motif     Consensus sequence: CTATTTWTAG Reverse complement motif     Consensus sequence: CTAWAAATAG

Dataset #: 3
Motif ID: 69
Motif name: NKX3-1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0453202

Alignment:
ATACTTA
ATATTTA

Original motif     Consensus sequence: ATACTTA Reverse complement motif     Consensus sequence: TAAGTAT

Dataset #: 1 Motif ID: 35 Motif name: Motif 35

Original motif     Consensus sequence: KGCTGGS Reverse complement motif     Consensus sequence: SCCAGCR

Best Matches for Motif ID 35 (Highest to Lowest)

Dataset #: 4
Motif ID: 115
Motif name: ysCmAGCACwy
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0239923

Alignment:
DHGTGCTRGVH
---KGCTGGS-

Original motif     Consensus sequence: HVCMAGCACHH Reverse complement motif     Consensus sequence: DHGTGCTRGVH

Dataset #: 1
Motif ID: 6
Motif name: Motif 6
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0288353

Alignment:
GYGSTGGG
KGCTGGS-

Original motif     Consensus sequence: CCCASCMC Reverse complement motif     Consensus sequence: GYGSTGGG

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0386119

Alignment:
HBYGAGCTGGBB
----KGCTGGS-

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 4
Motif ID: 93
Motif name: cmCARCACTwr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0467269

Alignment:
BHCAGCACTHV
SCCAGCR----

Original motif     Consensus sequence: BHCAGCACTHV Reverse complement motif     Consensus sequence: VHAGTGCTGHB

Dataset #: 1
Motif ID: 22
Motif name: Motif 22
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.04839

Alignment:
GTGGTGGY
-KGCTGGS

Original motif     Consensus sequence: GTGGTGGY Reverse complement motif     Consensus sequence: MCCACCAC

Dataset #: 1 Motif ID: 36 Motif name: Motif 36

Original motif     Consensus sequence: CATGGTGG Reverse complement motif     Consensus sequence: CCACCATG

Best Matches for Motif ID 36 (Highest to Lowest)

Dataset #: 4
Motif ID: 98
Motif name: myyCCCACmTGCmyr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0987507

Alignment:
VDRGCAYGTGGGGVD
----CATGGTGG---

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Dataset #: 1
Motif ID: 30
Motif name: Motif 30
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.100683

Alignment:
YCMTCCTG
CCACCATG

Original motif     Consensus sequence: CAGGARGM Reverse complement motif     Consensus sequence: YCMTCCTG

Dataset #: 4
Motif ID: 115
Motif name: ysCmAGCACwy
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.106759

Alignment:
DHGTGCTRGVH
-CATGGTGG--

Original motif     Consensus sequence: HVCMAGCACHH Reverse complement motif     Consensus sequence: DHGTGCTRGVH

Dataset #: 4
Motif ID: 118
Motif name: yrCACATGCATGTGyr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.106836

Alignment:
DVCACATGCATGTGBH
----CATGGTGG----

Original motif     Consensus sequence: HVCACATGCATGTGBD Reverse complement motif     Consensus sequence: DVCACATGCATGTGBH

Dataset #: 4
Motif ID: 101
Motif name: csCACCCCgg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.10804

Alignment:
BBGGGGTGVD
-CATGGTGG-

Original motif     Consensus sequence: HVCACCCCBB Reverse complement motif     Consensus sequence: BBGGGGTGVD

Dataset #: 1 Motif ID: 37 Motif name: Motif 37

Original motif     Consensus sequence: GYATGTGY Reverse complement motif     Consensus sequence: KCACATKC

Best Matches for Motif ID 37 (Highest to Lowest)

Dataset #: 4
Motif ID: 118
Motif name: yrCACATGCATGTGyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0125979

Alignment:
HVCACATGCATGTGBD
-------GYATGTGY-

Original motif     Consensus sequence: HVCACATGCATGTGBD Reverse complement motif     Consensus sequence: DVCACATGCATGTGBH

Dataset #: 4
Motif ID: 98
Motif name: myyCCCACmTGCmyr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.035887

Alignment:
VDRGCAYGTGGGGVD
---GYATGTGY----

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0415984

Alignment:
ACACACAC
KCACATKC

Original motif     Consensus sequence: ACACACAC Reverse complement motif     Consensus sequence: GTGTGTGT

Dataset #: 2
Motif ID: 58
Motif name: Motif 58
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0521491

Alignment:
TGTGTGTGTGTGTG
-GYATGTGY-----

Original motif     Consensus sequence: CACACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTGTG

Dataset #: 4
Motif ID: 90
Motif name: ymTACATAyw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0544369

Alignment:
DBTATGTAHH
-GYATGTGY-

Original motif     Consensus sequence: HHTACATABD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 1 Motif ID: 38 Motif name: Motif 38

Original motif     Consensus sequence: CCTYCTCC Reverse complement motif     Consensus sequence: GGAGMAGG

Best Matches for Motif ID 38 (Highest to Lowest)

Dataset #: 1
Motif ID: 51
Motif name: Motif 51
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0329729

Alignment:
AGAGCWGG
GGAGMAGG

Original motif     Consensus sequence: AGAGCWGG Reverse complement motif     Consensus sequence: CCWGCTCT

Dataset #: 4
Motif ID: 88
Motif name: ygCTyTTCsg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0476921

Alignment:
BCGAAMAGHH
-GGAGMAGG-

Original motif     Consensus sequence: HDCTYTTCGB Reverse complement motif     Consensus sequence: BCGAAMAGHH

Dataset #: 1
Motif ID: 29
Motif name: Motif 29
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0493297

Alignment:
GGGGCYGG
GGAGMAGG

Original motif     Consensus sequence: CCMGCCCC Reverse complement motif     Consensus sequence: GGGGCYGG

Dataset #: 4
Motif ID: 103
Motif name: csCCaGCTCCCgs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0526885

Alignment:
BVGGGAGCTGGBB
---GGAGMAGG--

Original motif     Consensus sequence: BBCCAGCTCCCVB Reverse complement motif     Consensus sequence: BVGGGAGCTGGBB

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0576001

Alignment:
HBYGAGCTGGBB
--GGAGMAGG--

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 1 Motif ID: 39 Motif name: Motif 39

Original motif     Consensus sequence: ACAGMCAG Reverse complement motif     Consensus sequence: CTGYCTGT

Best Matches for Motif ID 39 (Highest to Lowest)

Dataset #: 1
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0307023

Alignment:
KRAGGCAG
ACAGMCAG

Original motif     Consensus sequence: CTGCCTKY Reverse complement motif     Consensus sequence: KRAGGCAG

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0593235

Alignment:
ACACACAC
ACAGMCAG

Original motif     Consensus sequence: ACACACAC Reverse complement motif     Consensus sequence: GTGTGTGT

Dataset #: 2
Motif ID: 58
Motif name: Motif 58
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0634902

Alignment:
TGTGTGTGTGTGTG
-----CTGYCTGT-

Original motif     Consensus sequence: CACACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTGTG

Dataset #: 4
Motif ID: 116
Motif name: dyCTGCyTCyc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0653685

Alignment:
DHCTGCYTCHB
--CTGYCTGT-

Original motif     Consensus sequence: DHCTGCYTCHB Reverse complement motif     Consensus sequence: BHGAKGCAGHH

Dataset #: 4
Motif ID: 113
Motif name: htCTGyKTCbt
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0674965

Alignment:
HVGAAMCAGVH
-ACAGMCAG--

Original motif     Consensus sequence: HBCTGYTTCBH Reverse complement motif     Consensus sequence: HVGAAMCAGVH

Dataset #: 1 Motif ID: 40 Motif name: Motif 40

Original motif     Consensus sequence: CCACASC Reverse complement motif     Consensus sequence: GSTGTGG

Best Matches for Motif ID 40 (Highest to Lowest)

Dataset #: 4
Motif ID: 110
Motif name: cmCCACACCcm
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 7
Similarity score: 0.0381642

Alignment:
VBGGTGTGGBD
--GSTGTGG--

Original motif     Consensus sequence: HVCCACACCBV Reverse complement motif     Consensus sequence: VBGGTGTGGBD

Dataset #: 4
Motif ID: 111
Motif name: ccCCmCaCCCCcc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0.0665887

Alignment:
HBCCCCACCCCBH
--CCACASC----

Original motif     Consensus sequence: HBCCCCACCCCBH Reverse complement motif     Consensus sequence: DBGGGGTGGGGBD

Dataset #: 1
Motif ID: 22
Motif name: Motif 22
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0714286

Alignment:
MCCACCAC
CCACASC-

Original motif     Consensus sequence: GTGGTGGY Reverse complement motif     Consensus sequence: MCCACCAC

Dataset #: 1
Motif ID: 6
Motif name: Motif 6
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0745048

Alignment:
GYGSTGGG
GSTGTGG-

Original motif     Consensus sequence: CCCASCMC Reverse complement motif     Consensus sequence: GYGSTGGG

Dataset #: 1
Motif ID: 12
Motif name: Motif 12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0820312

Alignment:
MTGTGTGC
-GSTGTGG

Original motif     Consensus sequence: GCACACAY Reverse complement motif     Consensus sequence: MTGTGTGC

Dataset #: 1 Motif ID: 41 Motif name: Motif 41

Original motif     Consensus sequence: CTCAGARA Reverse complement motif     Consensus sequence: TKTCTGAG

Best Matches for Motif ID 41 (Highest to Lowest)

Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0342598

Alignment:
CACASASA
CTCAGARA

Original motif     Consensus sequence: CACASASA Reverse complement motif     Consensus sequence: TSTSTGTG

Dataset #: 4
Motif ID: 117
Motif name: yaCATAYACay
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0601983

Alignment:
DTGTGTATGBD
---TKTCTGAG

Original motif     Consensus sequence: HVCATACACAH Reverse complement motif     Consensus sequence: DTGTGTATGBD

Dataset #: 1
Motif ID: 42
Motif name: Motif 42
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0645699

Alignment:
GTTCTKGG
TKTCTGAG

Original motif     Consensus sequence: CCYAGAAC Reverse complement motif     Consensus sequence: GTTCTKGG

Dataset #: 4
Motif ID: 127
Motif name: rryCAGGGAyw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0655288

Alignment:
DDYCAGGGAHD
-CTCAGARA--

Original motif     Consensus sequence: DDYCAGGGAHD Reverse complement motif     Consensus sequence: DHTCCCTGMDD

Dataset #: 2
Motif ID: 58
Motif name: Motif 58
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0667371

Alignment:
TGTGTGTGTGTGTG
------TKTCTGAG

Original motif     Consensus sequence: CACACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTGTG

Dataset #: 1 Motif ID: 42 Motif name: Motif 42

Original motif     Consensus sequence: CCYAGAAC Reverse complement motif     Consensus sequence: GTTCTKGG

Best Matches for Motif ID 42 (Highest to Lowest)

Dataset #: 1
Motif ID: 19
Motif name: Motif 19
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0610815

Alignment:
CCTGGARC
CCYAGAAC

Original motif     Consensus sequence: CCTGGARC Reverse complement motif     Consensus sequence: GKTCCAGG

Dataset #: 4
Motif ID: 115
Motif name: ysCmAGCACwy
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0690213

Alignment:
HVCMAGCACHH
-CCYAGAAC--

Original motif     Consensus sequence: HVCMAGCACHH Reverse complement motif     Consensus sequence: DHGTGCTRGVH

Dataset #: 1
Motif ID: 6
Motif name: Motif 6
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0735374

Alignment:
GYGSTGGG
GTTCTKGG

Original motif     Consensus sequence: CCCASCMC Reverse complement motif     Consensus sequence: GYGSTGGG

Dataset #: 4
Motif ID: 109
Motif name: aaCAAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0769138

Alignment:
HHGTTTTTGHH
--GTTCTKGG-

Original motif     Consensus sequence: HHCAAAAACHH Reverse complement motif     Consensus sequence: HHGTTTTTGHH

Dataset #: 1
Motif ID: 41
Motif name: Motif 41
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0911976

Alignment:
TKTCTGAG
GTTCTKGG

Original motif     Consensus sequence: CTCAGARA Reverse complement motif     Consensus sequence: TKTCTGAG

Dataset #: 1 Motif ID: 43 Motif name: Motif 43

Original motif     Consensus sequence: CTCTGCCY Reverse complement motif     Consensus sequence: KGGCAGAG

Best Matches for Motif ID 43 (Highest to Lowest)

Dataset #: 3
Motif ID: 84
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0750223

Alignment:
AAAGGTCAAAGGTCAAC
---KGGCAGAG------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 2
Motif ID: 59
Motif name: Motif 59
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0776916

Alignment:
CTBCCTCHSYCYCC
----CTCTGCCY--

Original motif     Consensus sequence: CTBCCTCHSYCYCC Reverse complement motif     Consensus sequence: GGMGKSHGAGGBAG

Dataset #: 4
Motif ID: 116
Motif name: dyCTGCyTCyc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0799777

Alignment:
DHCTGCYTCHB
CTCTGCCY---

Original motif     Consensus sequence: DHCTGCYTCHB Reverse complement motif     Consensus sequence: BHGAKGCAGHH

Dataset #: 4
Motif ID: 88
Motif name: ygCTyTTCsg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0904749

Alignment:
HDCTYTTCGB
--CTCTGCCY

Original motif     Consensus sequence: HDCTYTTCGB Reverse complement motif     Consensus sequence: BCGAAMAGHH

Dataset #: 3
Motif ID: 83
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0905992

Alignment:
TGAMCTTTGMMCYT
----CTCTGCCY--

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 1 Motif ID: 44 Motif name: Motif 44

Original motif     Consensus sequence: AGAAATG Reverse complement motif     Consensus sequence: CATTTCT

Best Matches for Motif ID 44 (Highest to Lowest)

Dataset #: 1
Motif ID: 14
Motif name: Motif 14
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0447866

Alignment:
MATTTTY
CATTTCT

Original motif     Consensus sequence: KAAAATR Reverse complement motif     Consensus sequence: MATTTTY

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.0513825

Alignment:
DHATKTTTAHH
-CATTTCT---

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0527225

Alignment:
GGAAARG
AGAAATG

Original motif     Consensus sequence: CMTTTCC Reverse complement motif     Consensus sequence: GGAAARG

Dataset #: 3
Motif ID: 61
Motif name: MEF2A
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0603872

Alignment:
CTATTTWTAG
-CATTTCT--

Original motif     Consensus sequence: CTATTTWTAG Reverse complement motif     Consensus sequence: CTAWAAATAG

Dataset #: 3
Motif ID: 71
Motif name: Evi1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 7
Similarity score: 0.0740469

Alignment:
TBTTATCTTMTCTT
------CATTTCT-

Original motif     Consensus sequence: AAGAYAAGATAABA Reverse complement motif     Consensus sequence: TBTTATCTTMTCTT

Dataset #: 1 Motif ID: 45 Motif name: Motif 45

Original motif     Consensus sequence: ATTATTAW Reverse complement motif     Consensus sequence: WTAATAAT

Best Matches for Motif ID 45 (Highest to Lowest)

Dataset #: 4
Motif ID: 100
Motif name: wwTAATAAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0312128

Alignment:
DDTTATTAHD
-ATTATTAW-

Original motif     Consensus sequence: DHTAATAADD Reverse complement motif     Consensus sequence: DDTTATTAHD

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0503721

Alignment:
DHATKTTTAHH
--ATTATTAW-

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 3
Motif ID: 68
Motif name: HNF1A
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0585066

Alignment:
GGTTAATDATTAMC
--WTAATAAT----

Original motif     Consensus sequence: GGTTAATDATTAMC Reverse complement motif     Consensus sequence: GYTAATDATTAACC

Dataset #: 3
Motif ID: 82
Motif name: HNF1B
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0743796

Alignment:
TTAATRWTTAAC
WTAATAAT----

Original motif     Consensus sequence: TTAATRWTTAAC Reverse complement motif     Consensus sequence: GTTAAWKATTAA

Dataset #: 3
Motif ID: 66
Motif name: Lhx3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0744439

Alignment:
BMWTAATTAATTW
-----ATTATTAW

Original motif     Consensus sequence: WAATTAATTAWYB Reverse complement motif     Consensus sequence: BMWTAATTAATTW

Dataset #: 1 Motif ID: 46 Motif name: Motif 46

Original motif     Consensus sequence: GGAAASA Reverse complement motif     Consensus sequence: TSTTTCC

Best Matches for Motif ID 46 (Highest to Lowest)

Dataset #: 1
Motif ID: 13
Motif name: Motif 13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0428804

Alignment:
GGAAGSAR
GGAAASA-

Original motif     Consensus sequence: GGAAGSAR Reverse complement motif     Consensus sequence: MTSCTTCC

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0542683

Alignment:
GGAAARG
GGAAASA

Original motif     Consensus sequence: CMTTTCC Reverse complement motif     Consensus sequence: GGAAARG

Dataset #: 3
Motif ID: 75
Motif name: FOXF2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0636714

Alignment:
BHADSGTAAACAAD
-----GGAAASA--

Original motif     Consensus sequence: BHADSGTAAACAAD Reverse complement motif     Consensus sequence: DTTGTTTACSBTBB

Dataset #: 3
Motif ID: 86
Motif name: FOXO3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0652994

Alignment:
KGTAAACA
-GGAAASA

Original motif     Consensus sequence: KGTAAACA Reverse complement motif     Consensus sequence: TGTTTACR

Dataset #: 4
Motif ID: 113
Motif name: htCTGyKTCbt
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0693025

Alignment:
HBCTGYTTCBH
---TSTTTCC-

Original motif     Consensus sequence: HBCTGYTTCBH Reverse complement motif     Consensus sequence: HVGAAMCAGVH

Dataset #: 1 Motif ID: 47 Motif name: Motif 47

Original motif     Consensus sequence: KGCTGCTG Reverse complement motif     Consensus sequence: CAGCAGCR

Best Matches for Motif ID 47 (Highest to Lowest)

Dataset #: 4
Motif ID: 105
Motif name: ccGCAGCCss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0572744

Alignment:
BBGGCTGCGV
--KGCTGCTG

Original motif     Consensus sequence: VCGCAGCCBB Reverse complement motif     Consensus sequence: BBGGCTGCGV

Dataset #: 4
Motif ID: 115
Motif name: ysCmAGCACwy
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0621107

Alignment:
DHGTGCTRGVH
KGCTGCTG---

Original motif     Consensus sequence: HVCMAGCACHH Reverse complement motif     Consensus sequence: DHGTGCTRGVH

Dataset #: 4
Motif ID: 93
Motif name: cmCARCACTwr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0664426

Alignment:
VHAGTGCTGHB
-KGCTGCTG--

Original motif     Consensus sequence: BHCAGCACTHV Reverse complement motif     Consensus sequence: VHAGTGCTGHB

Dataset #: 1
Motif ID: 30
Motif name: Motif 30
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0671183

Alignment:
YCMTCCTG
KGCTGCTG

Original motif     Consensus sequence: CAGGARGM Reverse complement motif     Consensus sequence: YCMTCCTG

Dataset #: 4
Motif ID: 116
Motif name: dyCTGCyTCyc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0696714

Alignment:
DHCTGCYTCHB
KGCTGCTG---

Original motif     Consensus sequence: DHCTGCYTCHB Reverse complement motif     Consensus sequence: BHGAKGCAGHH

Dataset #: 1 Motif ID: 48 Motif name: Motif 48

Original motif     Consensus sequence: ACACWG Reverse complement motif     Consensus sequence: CWGTGT

Best Matches for Motif ID 48 (Highest to Lowest)

Dataset #: 1
Motif ID: 12
Motif name: Motif 12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0450356

Alignment:
MTGTGTGC
CWGTGT--

Original motif     Consensus sequence: GCACACAY Reverse complement motif     Consensus sequence: MTGTGTGC

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0534035

Alignment:
GAACDCAG
ACACWG--

Original motif     Consensus sequence: CTGDGTTC Reverse complement motif     Consensus sequence: GAACDCAG

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0615752

Alignment:
MTSTGTA
-CWGTGT

Original motif     Consensus sequence: MTSTGTA Reverse complement motif     Consensus sequence: TACASAR

Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.065723

Alignment:
CACASASA
-ACACWG-

Original motif     Consensus sequence: CACASASA Reverse complement motif     Consensus sequence: TSTSTGTG

Dataset #: 4
Motif ID: 117
Motif name: yaCATAYACay
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0663715

Alignment:
HVCATACACAH
-----ACACWG

Original motif     Consensus sequence: HVCATACACAH Reverse complement motif     Consensus sequence: DTGTGTATGBD

Dataset #: 1 Motif ID: 49 Motif name: Motif 49

Original motif     Consensus sequence: AGATAAAR Reverse complement motif     Consensus sequence: KTTTATCT

Best Matches for Motif ID 49 (Highest to Lowest)

Dataset #: 3
Motif ID: 71
Motif name: Evi1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0168651

Alignment:
TBTTATCTTMTCTT
KTTTATCT------

Original motif     Consensus sequence: AAGAYAAGATAABA Reverse complement motif     Consensus sequence: TBTTATCTTMTCTT

Dataset #: 3
Motif ID: 67
Motif name: FOXI1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0451069

Alignment:
KBDTRTTTRTTT
----KTTTATCT

Original motif     Consensus sequence: KBDTRTTTRTTT Reverse complement motif     Consensus sequence: AAAMAAAMADBY

Dataset #: 2
Motif ID: 60
Motif name: Motif 60
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0469577

Alignment:
YTTTTTRTTTTDTT
--KTTTATCT----

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0471231

Alignment:
GTTTGTTT
KTTTATCT

Original motif     Consensus sequence: AAACAAAC Reverse complement motif     Consensus sequence: GTTTGTTT

Dataset #: 3
Motif ID: 84
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 8
Similarity score: 0.0483731

Alignment:
GTTGACCTTTGACCTTT
KTTTATCT---------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 1 Motif ID: 50 Motif name: Motif 50

Original motif     Consensus sequence: GAAGAGCA Reverse complement motif     Consensus sequence: TGCTCTTC

Best Matches for Motif ID 50 (Highest to Lowest)

Dataset #: 4
Motif ID: 88
Motif name: ygCTyTTCsg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0206791

Alignment:
HDCTYTTCGB
TGCTCTTC--

Original motif     Consensus sequence: HDCTYTTCGB Reverse complement motif     Consensus sequence: BCGAAMAGHH

Dataset #: 3
Motif ID: 71
Motif name: Evi1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0485428

Alignment:
TBTTATCTTMTCTT
--TGCTCTTC----

Original motif     Consensus sequence: AAGAYAAGATAABA Reverse complement motif     Consensus sequence: TBTTATCTTMTCTT

Dataset #: 3
Motif ID: 83
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0680446

Alignment:
AKGYYCAAAGRTCA
------GAAGAGCA

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0707433

Alignment:
AAASAAAA
GAAGAGCA

Original motif     Consensus sequence: AAASAAAA Reverse complement motif     Consensus sequence: TTTTSTTT

Dataset #: 4
Motif ID: 114
Motif name: awAACAcAAwa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0709876

Alignment:
DDAACACAADV
-GAAGAGCA--

Original motif     Consensus sequence: DDAACACAADV Reverse complement motif     Consensus sequence: BDTTGTGTTDD

Dataset #: 1 Motif ID: 51 Motif name: Motif 51

Original motif     Consensus sequence: AGAGCWGG Reverse complement motif     Consensus sequence: CCWGCTCT

Best Matches for Motif ID 51 (Highest to Lowest)

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0568763

Alignment:
HBYGAGCTGGBB
--AGAGCWGG--

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 1
Motif ID: 38
Motif name: Motif 38
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0627656

Alignment:
CCTYCTCC
CCWGCTCT

Original motif     Consensus sequence: CCTYCTCC Reverse complement motif     Consensus sequence: GGAGMAGG

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0634208

Alignment:
AGCCCWGG
AGAGCWGG

Original motif     Consensus sequence: AGCCCWGG Reverse complement motif     Consensus sequence: CCWGGGCT

Dataset #: 4
Motif ID: 103
Motif name: csCCaGCTCCCgs
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0769435

Alignment:
BVGGGAGCTGGBB
---AGAGCWGG--

Original motif     Consensus sequence: BBCCAGCTCCCVB Reverse complement motif     Consensus sequence: BVGGGAGCTGGBB

Dataset #: 4
Motif ID: 93
Motif name: cmCARCACTwr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0785511

Alignment:
BHCAGCACTHV
-CCWGCTCT--

Original motif     Consensus sequence: BHCAGCACTHV Reverse complement motif     Consensus sequence: VHAGTGCTGHB

Dataset #: 2 Motif ID: 52 Motif name: Motif 52

Original motif     Consensus sequence: AGVCAGG Reverse complement motif     Consensus sequence: CCTGVCT

Best Matches for Motif ID 52 (Highest to Lowest)

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0426638

Alignment:
GAGRMAGR
-AGVCAGG

Original motif     Consensus sequence: GAGRMAGR Reverse complement motif     Consensus sequence: KCTRMCTC

Dataset #: 4
Motif ID: 116
Motif name: dyCTGCyTCyc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.0621766

Alignment:
DHCTGCYTCHB
-CCTGVCT---

Original motif     Consensus sequence: DHCTGCYTCHB Reverse complement motif     Consensus sequence: BHGAKGCAGHH

Dataset #: 4
Motif ID: 127
Motif name: rryCAGGGAyw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.0705096

Alignment:
DHTCCCTGMDD
----CCTGVCT

Original motif     Consensus sequence: DDYCAGGGAHD Reverse complement motif     Consensus sequence: DHTCCCTGMDD

Dataset #: 4
Motif ID: 113
Motif name: htCTGyKTCbt
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0753705

Alignment:
HVGAAMCAGVH
---AGVCAGG-

Original motif     Consensus sequence: HBCTGYTTCBH Reverse complement motif     Consensus sequence: HVGAAMCAGVH

Dataset #: 4
Motif ID: 126
Motif name: yvTGCAGsCAcg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.077286

Alignment:
BVTGCAGSCABV
-----AGVCAGG

Original motif     Consensus sequence: BVTGCAGSCABV Reverse complement motif     Consensus sequence: VBTGSCTGCAVB

Dataset #: 2 Motif ID: 53 Motif name: Motif 53

Original motif     Consensus sequence: TSTGTR Reverse complement motif     Consensus sequence: MACASA

Best Matches for Motif ID 53 (Highest to Lowest)

Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.00228262

Alignment:
TSTSTGTG
TSTGTR--

Original motif     Consensus sequence: CACASASA Reverse complement motif     Consensus sequence: TSTSTGTG

Dataset #: 4
Motif ID: 114
Motif name: awAACAcAAwa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0122629

Alignment:
DDAACACAADV
--MACASA---

Original motif     Consensus sequence: DDAACACAADV Reverse complement motif     Consensus sequence: BDTTGTGTTDD

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0137023

Alignment:
MTSTGTA
-TSTGTR

Original motif     Consensus sequence: MTSTGTA Reverse complement motif     Consensus sequence: TACASAR

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0252334

Alignment:
GTGTGTGT
-TSTGTR-

Original motif     Consensus sequence: ACACACAC Reverse complement motif     Consensus sequence: GTGTGTGT

Dataset #: 2
Motif ID: 58
Motif name: Motif 58
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.025412

Alignment:
TGTGTGTGTGTGTG
--------TSTGTR

Original motif     Consensus sequence: CACACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTGTG

Dataset #: 2 Motif ID: 54 Motif name: Motif 54

Original motif     Consensus sequence: RGAAA Reverse complement motif     Consensus sequence: TTTCK

Best Matches for Motif ID 54 (Highest to Lowest)

Dataset #: 1
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 5
Similarity score: 0

Alignment:
RGARGAAA
---RGAAA

Original motif     Consensus sequence: RGARGAAA Reverse complement motif     Consensus sequence: TTTCKTCK

Dataset #: 1
Motif ID: 28
Motif name: Motif 28
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.0199405

Alignment:
TTTCTVT
TTTCK--

Original motif     Consensus sequence: AVAGAAA Reverse complement motif     Consensus sequence: TTTCTVT

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.0284722

Alignment:
CMTTTCC
TTTCK--

Original motif     Consensus sequence: CMTTTCC Reverse complement motif     Consensus sequence: GGAAARG

Dataset #: 1
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.0284722

Alignment:
GGAAASA
RGAAA--

Original motif     Consensus sequence: GGAAASA Reverse complement motif     Consensus sequence: TSTTTCC

Dataset #: 1
Motif ID: 44
Motif name: Motif 44
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.0339244

Alignment:
AGAAATG
RGAAA--

Original motif     Consensus sequence: AGAAATG Reverse complement motif     Consensus sequence: CATTTCT

Dataset #: 2 Motif ID: 55 Motif name: Motif 55

Original motif     Consensus sequence: TTTAAAA Reverse complement motif     Consensus sequence: TTTTAAA

Best Matches for Motif ID 55 (Highest to Lowest)

Dataset #: 4
Motif ID: 120
Motif name: wtTTTwAAAaw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 7
Similarity score: 0.00286145

Alignment:
HHTTTWAAADD
--TTTAAAA--

Original motif     Consensus sequence: HHTTTWAAADD Reverse complement motif     Consensus sequence: DDTTTWAAAHH

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0142562

Alignment:
TTTWWAAA
-TTTAAAA

Original motif     Consensus sequence: TTTWWAAA Reverse complement motif     Consensus sequence: TTTWWAAA

Dataset #: 4
Motif ID: 91
Motif name: wtATTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.036821

Alignment:
HWTAAAATHD
TTTAAAA---

Original motif     Consensus sequence: DHATTTTAWH Reverse complement motif     Consensus sequence: HWTAAAATHD

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0428268

Alignment:
DHATKTTTAHH
----TTTTAAA

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 3
Motif ID: 62
Motif name: TBP
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.058454

Alignment:
VBVVVVMWTTTATAS
-------TTTTAAA-

Original motif     Consensus sequence: STATAAAWRVVVVBV Reverse complement motif     Consensus sequence: VBVVVVMWTTTATAS

Dataset #: 2 Motif ID: 56 Motif name: Motif 56

Original motif     Consensus sequence: CACGGA Reverse complement motif     Consensus sequence: TCCGTG

Best Matches for Motif ID 56 (Highest to Lowest)

Dataset #: 4
Motif ID: 127
Motif name: rryCAGGGAyw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0151346

Alignment:
DDYCAGGGAHD
---CACGGA--

Original motif     Consensus sequence: DDYCAGGGAHD Reverse complement motif     Consensus sequence: DHTCCCTGMDD

Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0281094

Alignment:
CACASASA
CACGGA--

Original motif     Consensus sequence: CACASASA Reverse complement motif     Consensus sequence: TSTSTGTG

Dataset #: 1
Motif ID: 41
Motif name: Motif 41
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.051968

Alignment:
TKTCTGAG
--TCCGTG

Original motif     Consensus sequence: CTCAGARA Reverse complement motif     Consensus sequence: TKTCTGAG

Dataset #: 1
Motif ID: 19
Motif name: Motif 19
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.051968

Alignment:
GKTCCAGG
--TCCGTG

Original motif     Consensus sequence: CCTGGARC Reverse complement motif     Consensus sequence: GKTCCAGG

Dataset #: 2
Motif ID: 53
Motif name: Motif 53
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0528198

Alignment:
TSTGTR
TCCGTG

Original motif     Consensus sequence: TSTGTR Reverse complement motif     Consensus sequence: MACASA

Dataset #: 2 Motif ID: 57 Motif name: Motif 57

Original motif     Consensus sequence: SAGGAA Reverse complement motif     Consensus sequence: TTCCTS

Best Matches for Motif ID 57 (Highest to Lowest)

Dataset #: 1
Motif ID: 30
Motif name: Motif 30
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0409967

Alignment:
CAGGARGM
SAGGAA--

Original motif     Consensus sequence: CAGGARGM Reverse complement motif     Consensus sequence: YCMTCCTG

Dataset #: 1
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0466104

Alignment:
RGARGAAA
-SAGGAA-

Original motif     Consensus sequence: RGARGAAA Reverse complement motif     Consensus sequence: TTTCKTCK

Dataset #: 1
Motif ID: 28
Motif name: Motif 28
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0548389

Alignment:
AVAGAAA
-SAGGAA

Original motif     Consensus sequence: AVAGAAA Reverse complement motif     Consensus sequence: TTTCTVT

Dataset #: 1
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0627861

Alignment:
KRAGGCAG
-SAGGAA-

Original motif     Consensus sequence: CTGCCTKY Reverse complement motif     Consensus sequence: KRAGGCAG

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0659124

Alignment:
GAGRMAGR
SAGGAA--

Original motif     Consensus sequence: GAGRMAGR Reverse complement motif     Consensus sequence: KCTRMCTC

Dataset #: 2 Motif ID: 58 Motif name: Motif 58

Original motif     Consensus sequence: CACACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTGTG

Best Matches for Motif ID 58 (Highest to Lowest)

Dataset #: 4
Motif ID: 118
Motif name: yrCACATGCATGTGyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0942589

Alignment:
HVCACATGCATGTGBD
--CACACACACACACA

Original motif     Consensus sequence: HVCACATGCATGTGBD Reverse complement motif     Consensus sequence: DVCACATGCATGTGBH

Dataset #: 2
Motif ID: 59
Motif name: Motif 59
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0950431

Alignment:
GGMGKSHGAGGBAG
TGTGTGTGTGTGTG

Original motif     Consensus sequence: CTBCCTCHSYCYCC Reverse complement motif     Consensus sequence: GGMGKSHGAGGBAG

Dataset #: 4
Motif ID: 98
Motif name: myyCCCACmTGCmyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0967648

Alignment:
HBCCCCACMTGCMHV
-CACACACACACACA

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Dataset #: 4
Motif ID: 111
Motif name: ccCCmCaCCCCcc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.595051

Alignment:
-HBCCCCACCCCBH
CACACACACACACA

Original motif     Consensus sequence: HBCCCCACCCCBH Reverse complement motif     Consensus sequence: DBGGGGTGGGGBD

Dataset #: 2
Motif ID: 60
Motif name: Motif 60
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.597407

Alignment:
-AADAAAAMAAAAAM
CACACACACACACA-

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Dataset #: 2 Motif ID: 59 Motif name: Motif 59

Original motif     Consensus sequence: CTBCCTCHSYCYCC Reverse complement motif     Consensus sequence: GGMGKSHGAGGBAG

Best Matches for Motif ID 59 (Highest to Lowest)

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 13
Number of overlap: 14
Similarity score: 0.0440476

Alignment:
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC
------------CTBCCTCHSYCYCC----

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 4
Motif ID: 98
Motif name: myyCCCACmTGCmyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.064469

Alignment:
HBCCCCACMTGCMHV
-CTBCCTCHSYCYCC

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Dataset #: 2
Motif ID: 58
Motif name: Motif 58
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0727936

Alignment:
TGTGTGTGTGTGTG
GGMGKSHGAGGBAG

Original motif     Consensus sequence: CACACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTGTG

Dataset #: 4
Motif ID: 111
Motif name: ccCCmCaCCCCcc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.53768

Alignment:
-HBCCCCACCCCBH
CTBCCTCHSYCYCC

Original motif     Consensus sequence: HBCCCCACCCCBH Reverse complement motif     Consensus sequence: DBGGGGTGGGGBD

Dataset #: 4
Motif ID: 103
Motif name: csCCaGCTCCCgs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.558794

Alignment:
-BVGGGAGCTGGBB
GGMGKSHGAGGBAG

Original motif     Consensus sequence: BBCCAGCTCCCVB Reverse complement motif     Consensus sequence: BVGGGAGCTGGBB

Dataset #: 2 Motif ID: 60 Motif name: Motif 60

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Best Matches for Motif ID 60 (Highest to Lowest)

Dataset #: 3
Motif ID: 71
Motif name: Evi1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0695286

Alignment:
AAGAYAAGATAABA
AADAAAAMAAAAAM

Original motif     Consensus sequence: AAGAYAAGATAABA Reverse complement motif     Consensus sequence: TBTTATCTTMTCTT

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0795461

Alignment:
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC
--AADAAAAMAAAAAM--------------

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 3
Motif ID: 62
Motif name: TBP
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0901534

Alignment:
STATAAAWRVVVVBV
-AADAAAAMAAAAAM

Original motif     Consensus sequence: STATAAAWRVVVVBV Reverse complement motif     Consensus sequence: VBVVVVMWTTTATAS

Dataset #: 4
Motif ID: 125
Motif name: wwTAATwwATTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0954049

Alignment:
DDTAATWWATTAHH
AADAAAAMAAAAAM

Original motif     Consensus sequence: DDTAATWWATTAHH Reverse complement motif     Consensus sequence: HHTAATWWATTADD

Dataset #: 3
Motif ID: 75
Motif name: FOXF2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0959909

Alignment:
BHADSGTAAACAAD
AADAAAAMAAAAAM

Original motif     Consensus sequence: BHADSGTAAACAAD Reverse complement motif     Consensus sequence: DTTGTTTACSBTBB

Dataset #: 3 Motif ID: 61 Motif name: MEF2A

Original motif     Consensus sequence: CTATTTWTAG Reverse complement motif     Consensus sequence: CTAWAAATAG

Best Matches for Motif ID 61 (Highest to Lowest)

Dataset #: 3
Motif ID: 62
Motif name: TBP
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.0368263

Alignment:
STATAAAWRVVVVBV
CTAWAAATAG-----

Original motif     Consensus sequence: STATAAAWRVVVVBV Reverse complement motif     Consensus sequence: VBVVVVMWTTTATAS

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0401238

Alignment:
HHTAAARATHD
-CTAWAAATAG

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 3
Motif ID: 67
Motif name: FOXI1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.056188

Alignment:
KBDTRTTTRTTT
--CTATTTWTAG

Original motif     Consensus sequence: KBDTRTTTRTTT Reverse complement motif     Consensus sequence: AAAMAAAMADBY

Dataset #: 3
Motif ID: 68
Motif name: HNF1A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0684894

Alignment:
GGTTAATDATTAMC
--CTATTTWTAG--

Original motif     Consensus sequence: GGTTAATDATTAMC Reverse complement motif     Consensus sequence: GYTAATDATTAACC

Dataset #: 4
Motif ID: 91
Motif name: wtATTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0714984

Alignment:
HWTAAAATHD
CTAWAAATAG

Original motif     Consensus sequence: DHATTTTAWH Reverse complement motif     Consensus sequence: HWTAAAATHD

Dataset #: 3 Motif ID: 62 Motif name: TBP

Original motif     Consensus sequence: STATAAAWRVVVVBV Reverse complement motif     Consensus sequence: VBVVVVMWTTTATAS

Best Matches for Motif ID 62 (Highest to Lowest)

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.050528

Alignment:
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC
STATAAAWRVVVVBV---------------

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 4
Motif ID: 125
Motif name: wwTAATwwATTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.581919

Alignment:
DDTAATWWATTAHH-
VBVVVVMWTTTATAS

Original motif     Consensus sequence: DDTAATWWATTAHH Reverse complement motif     Consensus sequence: HHTAATWWATTADD

Dataset #: 3
Motif ID: 68
Motif name: HNF1A
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.583461

Alignment:
-GYTAATDATTAACC
VBVVVVMWTTTATAS

Original motif     Consensus sequence: GGTTAATDATTAMC Reverse complement motif     Consensus sequence: GYTAATDATTAACC

Dataset #: 2
Motif ID: 60
Motif name: Motif 60
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.58354

Alignment:
-AADAAAAMAAAAAM
STATAAAWRVVVVBV

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Dataset #: 4
Motif ID: 98
Motif name: myyCCCACmTGCmyr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.587864

Alignment:
-HBCCCCACMTGCMHV
VBVVVVMWTTTATAS-

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Dataset #: 3 Motif ID: 63 Motif name: FOXL1

Original motif     Consensus sequence: WHDAHATA Reverse complement motif     Consensus sequence: TATDTDHW

Best Matches for Motif ID 63 (Highest to Lowest)

Dataset #: 3
Motif ID: 75
Motif name: FOXF2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0287322

Alignment:
BHADSGTAAACAAD
WHDAHATA------

Original motif     Consensus sequence: BHADSGTAAACAAD Reverse complement motif     Consensus sequence: DTTGTTTACSBTBB

Dataset #: 4
Motif ID: 90
Motif name: ymTACATAyw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0294054

Alignment:
HHTACATABD
WHDAHATA--

Original motif     Consensus sequence: HHTACATABD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 3
Motif ID: 74
Motif name: FOXC1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.036287

Alignment:
VBHVHGTA
WHDAHATA

Original motif     Consensus sequence: VBHVHGTA Reverse complement motif     Consensus sequence: TACHBHBV

Dataset #: 3
Motif ID: 61
Motif name: MEF2A
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0377453

Alignment:
CTAWAAATAG
-WHDAHATA-

Original motif     Consensus sequence: CTATTTWTAG Reverse complement motif     Consensus sequence: CTAWAAATAG

Dataset #: 3
Motif ID: 76
Motif name: Sox2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0399271

Alignment:
CCWTTGTYATGCAAA
-------TATDTDHW

Original motif     Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif     Consensus sequence: TTTGCATMACAAWGG

Dataset #: 3 Motif ID: 64 Motif name: ARID3A

Original motif     Consensus sequence: ATYAAA Reverse complement motif     Consensus sequence: TTTMAT

Best Matches for Motif ID 64 (Highest to Lowest)

Dataset #: 4
Motif ID: 106
Motif name: wtAATTAAtw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0114914

Alignment:
DTAATTAATH
---ATYAAA-

Original motif     Consensus sequence: DTAATTAATH Reverse complement motif     Consensus sequence: HATTAATTAD

Dataset #: 1
Motif ID: 20
Motif name: Motif 20
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.015396

Alignment:
ATTAMAGG
ATYAAA--

Original motif     Consensus sequence: ATTAMAGG Reverse complement motif     Consensus sequence: CCTYTAAT

Dataset #: 3
Motif ID: 66
Motif name: Lhx3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0225727

Alignment:
WAATTAATTAWYB
--ATYAAA-----

Original motif     Consensus sequence: WAATTAATTAWYB Reverse complement motif     Consensus sequence: BMWTAATTAATTW

Dataset #: 1
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0340365

Alignment:
AGATAAAR
--ATYAAA

Original motif     Consensus sequence: AGATAAAR Reverse complement motif     Consensus sequence: KTTTATCT

Dataset #: 1
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0368439

Alignment:
WWTAAA
ATYAAA

Original motif     Consensus sequence: TTTAWW Reverse complement motif     Consensus sequence: WWTAAA

Dataset #: 3 Motif ID: 65 Motif name: Foxd3

Original motif     Consensus sequence: GAWTGTTTDTTT Reverse complement motif     Consensus sequence: AAAHAAACAWTC

Best Matches for Motif ID 65 (Highest to Lowest)

Dataset #: 3
Motif ID: 67
Motif name: FOXI1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.00335618

Alignment:
AAAMAAAMADBY
AAAHAAACAWTC

Original motif     Consensus sequence: KBDTRTTTRTTT Reverse complement motif     Consensus sequence: AAAMAAAMADBY

Dataset #: 2
Motif ID: 60
Motif name: Motif 60
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0177558

Alignment:
YTTTTTRTTTTDTT
GAWTGTTTDTTT--

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Dataset #: 3
Motif ID: 66
Motif name: Lhx3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0424677

Alignment:
BMWTAATTAATTW
GAWTGTTTDTTT-

Original motif     Consensus sequence: WAATTAATTAWYB Reverse complement motif     Consensus sequence: BMWTAATTAATTW

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 16
Number of overlap: 12
Similarity score: 0.0493847

Alignment:
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC
---AAAHAAACAWTC---------------

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 3
Motif ID: 68
Motif name: HNF1A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0526352

Alignment:
GGTTAATDATTAMC
GAWTGTTTDTTT--

Original motif     Consensus sequence: GGTTAATDATTAMC Reverse complement motif     Consensus sequence: GYTAATDATTAACC

Dataset #: 3 Motif ID: 66 Motif name: Lhx3

Original motif     Consensus sequence: WAATTAATTAWYB Reverse complement motif     Consensus sequence: BMWTAATTAATTW

Best Matches for Motif ID 66 (Highest to Lowest)

Dataset #: 3
Motif ID: 68
Motif name: HNF1A
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0814534

Alignment:
GYTAATDATTAACC
-WAATTAATTAWYB

Original motif     Consensus sequence: GGTTAATDATTAMC Reverse complement motif     Consensus sequence: GYTAATDATTAACC

Dataset #: 3
Motif ID: 62
Motif name: TBP
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.100645

Alignment:
VBVVVVMWTTTATAS
--BMWTAATTAATTW

Original motif     Consensus sequence: STATAAAWRVVVVBV Reverse complement motif     Consensus sequence: VBVVVVMWTTTATAS

Dataset #: 3
Motif ID: 71
Motif name: Evi1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.102129

Alignment:
TBTTATCTTMTCTT
BMWTAATTAATTW-

Original motif     Consensus sequence: AAGAYAAGATAABA Reverse complement motif     Consensus sequence: TBTTATCTTMTCTT

Dataset #: 4
Motif ID: 125
Motif name: wwTAATwwATTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.102843

Alignment:
DDTAATWWATTAHH
-WAATTAATTAWYB

Original motif     Consensus sequence: DDTAATWWATTAHH Reverse complement motif     Consensus sequence: HHTAATWWATTADD

Dataset #: 2
Motif ID: 60
Motif name: Motif 60
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.106545

Alignment:
AADAAAAMAAAAAM
-BMWTAATTAATTW

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Dataset #: 3 Motif ID: 67 Motif name: FOXI1

Original motif     Consensus sequence: KBDTRTTTRTTT Reverse complement motif     Consensus sequence: AAAMAAAMADBY

Best Matches for Motif ID 67 (Highest to Lowest)

Dataset #: 3
Motif ID: 65
Motif name: Foxd3
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0238603

Alignment:
AAAHAAACAWTC
AAAMAAAMADBY

Original motif     Consensus sequence: GAWTGTTTDTTT Reverse complement motif     Consensus sequence: AAAHAAACAWTC

Dataset #: 2
Motif ID: 60
Motif name: Motif 60
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.035724

Alignment:
YTTTTTRTTTTDTT
KBDTRTTTRTTT--

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Dataset #: 3
Motif ID: 66
Motif name: Lhx3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0611272

Alignment:
WAATTAATTAWYB
AAAMAAAMADBY-

Original motif     Consensus sequence: WAATTAATTAWYB Reverse complement motif     Consensus sequence: BMWTAATTAATTW

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0613545

Alignment:
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC
--AAAMAAAMADBY----------------

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 3
Motif ID: 62
Motif name: TBP
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0644285

Alignment:
VBVVVVMWTTTATAS
--KBDTRTTTRTTT-

Original motif     Consensus sequence: STATAAAWRVVVVBV Reverse complement motif     Consensus sequence: VBVVVVMWTTTATAS

Dataset #: 3 Motif ID: 68 Motif name: HNF1A

Original motif     Consensus sequence: GGTTAATDATTAMC Reverse complement motif     Consensus sequence: GYTAATDATTAACC

Best Matches for Motif ID 68 (Highest to Lowest)

Dataset #: 4
Motif ID: 125
Motif name: wwTAATwwATTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0430148

Alignment:
DDTAATWWATTAHH
GGTTAATDATTAMC

Original motif     Consensus sequence: DDTAATWWATTAHH Reverse complement motif     Consensus sequence: HHTAATWWATTADD

Dataset #: 3
Motif ID: 84
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0678001

Alignment:
AAAGGTCAAAGGTCAAC
---GGTTAATDATTAMC

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0691946

Alignment:
GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM
----------------GYTAATDATTAACC

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 3
Motif ID: 62
Motif name: TBP
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0722834

Alignment:
VBVVVVMWTTTATAS
-GYTAATDATTAACC

Original motif     Consensus sequence: STATAAAWRVVVVBV Reverse complement motif     Consensus sequence: VBVVVVMWTTTATAS

Dataset #: 3
Motif ID: 76
Motif name: Sox2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.077247

Alignment:
CCWTTGTYATGCAAA
GGTTAATDATTAMC-

Original motif     Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif     Consensus sequence: TTTGCATMACAAWGG

Dataset #: 3 Motif ID: 69 Motif name: NKX3-1

Original motif     Consensus sequence: ATACTTA Reverse complement motif     Consensus sequence: TAAGTAT

Best Matches for Motif ID 69 (Highest to Lowest)

Dataset #: 4
Motif ID: 90
Motif name: ymTACATAyw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0

Alignment:
HHTACATABD
-ATACTTA--

Original motif     Consensus sequence: HHTACATABD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 3
Motif ID: 66
Motif name: Lhx3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0.000214177

Alignment:
WAATTAATTAWYB
--TAAGTAT----

Original motif     Consensus sequence: WAATTAATTAWYB Reverse complement motif     Consensus sequence: BMWTAATTAATTW

Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.00274846

Alignment:
TATGTAD
TAAGTAT

Original motif     Consensus sequence: HTACATA Reverse complement motif     Consensus sequence: TATGTAD

Dataset #: 1
Motif ID: 34
Motif name: Motif 34
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.00883486

Alignment:
ATATTTA
ATACTTA

Original motif     Consensus sequence: ATATTTA Reverse complement motif     Consensus sequence: TAAATAT

Dataset #: 4
Motif ID: 106
Motif name: wtAATTAAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0100679

Alignment:
HATTAATTAD
---TAAGTAT

Original motif     Consensus sequence: DTAATTAATH Reverse complement motif     Consensus sequence: HATTAATTAD

Dataset #: 3 Motif ID: 70 Motif name: Foxq1

Original motif     Consensus sequence: HATTGTTTATW Reverse complement motif     Consensus sequence: WATAAACAATH

Best Matches for Motif ID 70 (Highest to Lowest)

Dataset #: 3
Motif ID: 67
Motif name: FOXI1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0247019

Alignment:
KBDTRTTTRTTT
HATTGTTTATW-

Original motif     Consensus sequence: KBDTRTTTRTTT Reverse complement motif     Consensus sequence: AAAMAAAMADBY

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0341803

Alignment:
DHATKTTTAHH
HATTGTTTATW

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 3
Motif ID: 65
Motif name: Foxd3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0354607

Alignment:
GAWTGTTTDTTT
HATTGTTTATW-

Original motif     Consensus sequence: GAWTGTTTDTTT Reverse complement motif     Consensus sequence: AAAHAAACAWTC

Dataset #: 2
Motif ID: 60
Motif name: Motif 60
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0611511

Alignment:
YTTTTTRTTTTDTT
-HATTGTTTATW--

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Dataset #: 4
Motif ID: 114
Motif name: awAACAcAAwa
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0621125

Alignment:
BDTTGTGTTDD
HATTGTTTATW

Original motif     Consensus sequence: DDAACACAADV Reverse complement motif     Consensus sequence: BDTTGTGTTDD

Dataset #: 3 Motif ID: 71 Motif name: Evi1

Original motif     Consensus sequence: AAGAYAAGATAABA Reverse complement motif     Consensus sequence: TBTTATCTTMTCTT

Best Matches for Motif ID 71 (Highest to Lowest)

Dataset #: 2
Motif ID: 60
Motif name: Motif 60
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0493882

Alignment:
AADAAAAMAAAAAM
AAGAYAAGATAABA

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Dataset #: 4
Motif ID: 125
Motif name: wwTAATwwATTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.072295

Alignment:
DDTAATWWATTAHH
AAGAYAAGATAABA

Original motif     Consensus sequence: DDTAATWWATTAHH Reverse complement motif     Consensus sequence: HHTAATWWATTADD

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 14
Similarity score: 0.0763889

Alignment:
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC
----AAGAYAAGATAABA------------

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 3
Motif ID: 66
Motif name: Lhx3
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.564942

Alignment:
BMWTAATTAATTW-
TBTTATCTTMTCTT

Original motif     Consensus sequence: WAATTAATTAWYB Reverse complement motif     Consensus sequence: BMWTAATTAATTW

Dataset #: 3
Motif ID: 75
Motif name: FOXF2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.568274

Alignment:
-DTTGTTTACSBTBB
TBTTATCTTMTCTT-

Original motif     Consensus sequence: BHADSGTAAACAAD Reverse complement motif     Consensus sequence: DTTGTTTACSBTBB

Dataset #: 3 Motif ID: 72 Motif name: Nkx2-5

Original motif     Consensus sequence: WTAAKTG Reverse complement motif     Consensus sequence: CARTTAW

Best Matches for Motif ID 72 (Highest to Lowest)

Dataset #: 3
Motif ID: 66
Motif name: Lhx3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0204974

Alignment:
WAATTAATTAWYB
------CARTTAW

Original motif     Consensus sequence: WAATTAATTAWYB Reverse complement motif     Consensus sequence: BMWTAATTAATTW

Dataset #: 4
Motif ID: 125
Motif name: wwTAATwwATTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.021519

Alignment:
HHTAATWWATTADD
-WTAAKTG------

Original motif     Consensus sequence: DDTAATWWATTAHH Reverse complement motif     Consensus sequence: HHTAATWWATTADD

Dataset #: 4
Motif ID: 106
Motif name: wtAATTAAtw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0245852

Alignment:
HATTAATTAD
--WTAAKTG-

Original motif     Consensus sequence: DTAATTAATH Reverse complement motif     Consensus sequence: HATTAATTAD

Dataset #: 3
Motif ID: 68
Motif name: HNF1A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.0356285

Alignment:
GGTTAATDATTAMC
--WTAAKTG-----

Original motif     Consensus sequence: GGTTAATDATTAMC Reverse complement motif     Consensus sequence: GYTAATDATTAACC

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0367872

Alignment:
WTAATAAT
-WTAAKTG

Original motif     Consensus sequence: ATTATTAW Reverse complement motif     Consensus sequence: WTAATAAT

Dataset #: 3 Motif ID: 73 Motif name: SRY

Original motif     Consensus sequence: BDWAACAAT Reverse complement motif     Consensus sequence: ATTGTTWDB

Best Matches for Motif ID 73 (Highest to Lowest)

Dataset #: 3
Motif ID: 76
Motif name: Sox2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 9
Similarity score: 0.0274533

Alignment:
TTTGCATMACAAWGG
----BDWAACAAT--

Original motif     Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif     Consensus sequence: TTTGCATMACAAWGG

Dataset #: 3
Motif ID: 65
Motif name: Foxd3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 0.0332484

Alignment:
AAAHAAACAWTC
-BDWAACAAT--

Original motif     Consensus sequence: GAWTGTTTDTTT Reverse complement motif     Consensus sequence: AAAHAAACAWTC

Dataset #: 3
Motif ID: 75
Motif name: FOXF2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 9
Similarity score: 0.0379812

Alignment:
BHADSGTAAACAAD
-----BDWAACAAT

Original motif     Consensus sequence: BHADSGTAAACAAD Reverse complement motif     Consensus sequence: DTTGTTTACSBTBB

Dataset #: 3
Motif ID: 70
Motif name: Foxq1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 0.0407369

Alignment:
WATAAACAATH
-BDWAACAAT-

Original motif     Consensus sequence: HATTGTTTATW Reverse complement motif     Consensus sequence: WATAAACAATH

Dataset #: 4
Motif ID: 96
Motif name: mdAAcCAACG
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 9
Similarity score: 0.044154

Alignment:
CGTTGGTTDB
-ATTGTTWDB

Original motif     Consensus sequence: VDAACCAACG Reverse complement motif     Consensus sequence: CGTTGGTTDB

Dataset #: 3 Motif ID: 74 Motif name: FOXC1

Original motif     Consensus sequence: VBHVHGTA Reverse complement motif     Consensus sequence: TACHBHBV

Best Matches for Motif ID 74 (Highest to Lowest)

Dataset #: 3
Motif ID: 75
Motif name: FOXF2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0250969

Alignment:
DTTGTTTACSBTBB
------TACHBHBV

Original motif     Consensus sequence: BHADSGTAAACAAD Reverse complement motif     Consensus sequence: DTTGTTTACSBTBB

Dataset #: 3
Motif ID: 63
Motif name: FOXL1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0421733

Alignment:
WHDAHATA
VBHVHGTA

Original motif     Consensus sequence: WHDAHATA Reverse complement motif     Consensus sequence: TATDTDHW

Dataset #: 4
Motif ID: 90
Motif name: ymTACATAyw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0422828

Alignment:
DBTATGTAHH
VBHVHGTA--

Original motif     Consensus sequence: HHTACATABD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 3
Motif ID: 62
Motif name: TBP
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0452131

Alignment:
STATAAAWRVVVVBV
--TACHBHBV-----

Original motif     Consensus sequence: STATAAAWRVVVVBV Reverse complement motif     Consensus sequence: VBVVVVMWTTTATAS

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 8
Similarity score: 0.046771

Alignment:
GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM
---------VBHVHGTA-------------

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 3 Motif ID: 75 Motif name: FOXF2

Original motif     Consensus sequence: BHADSGTAAACAAD Reverse complement motif     Consensus sequence: DTTGTTTACSBTBB

Best Matches for Motif ID 75 (Highest to Lowest)

Dataset #: 4
Motif ID: 125
Motif name: wwTAATwwATTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0789966

Alignment:
DDTAATWWATTAHH
DTTGTTTACSBTBB

Original motif     Consensus sequence: DDTAATWWATTAHH Reverse complement motif     Consensus sequence: HHTAATWWATTADD

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0801361

Alignment:
GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM
--------------BHADSGTAAACAAD--

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 3
Motif ID: 76
Motif name: Sox2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0829475

Alignment:
TTTGCATMACAAWGG
BHADSGTAAACAAD-

Original motif     Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif     Consensus sequence: TTTGCATMACAAWGG

Dataset #: 2
Motif ID: 60
Motif name: Motif 60
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0886208

Alignment:
AADAAAAMAAAAAM
BHADSGTAAACAAD

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Dataset #: 3
Motif ID: 80
Motif name: Pou5f1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0891042

Alignment:
ATTTGCATHACAAWG
-DTTGTTTACSBTBB

Original motif     Consensus sequence: CWTTGTHATGCAAAT Reverse complement motif     Consensus sequence: ATTTGCATHACAAWG

Dataset #: 3 Motif ID: 76 Motif name: Sox2

Original motif     Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif     Consensus sequence: TTTGCATMACAAWGG

Best Matches for Motif ID 76 (Highest to Lowest)

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 15
Similarity score: 0.0816521

Alignment:
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC
-------TTTGCATMACAAWGG--------

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 3
Motif ID: 80
Motif name: Pou5f1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.5

Alignment:
ATTTGCATHACAAWG-
-TTTGCATMACAAWGG

Original motif     Consensus sequence: CWTTGTHATGCAAAT Reverse complement motif     Consensus sequence: ATTTGCATHACAAWG

Dataset #: 4
Motif ID: 125
Motif name: wwTAATwwATTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.584157

Alignment:
-HHTAATWWATTADD
CCWTTGTYATGCAAA

Original motif     Consensus sequence: DDTAATWWATTAHH Reverse complement motif     Consensus sequence: HHTAATWWATTADD

Dataset #: 3
Motif ID: 75
Motif name: FOXF2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.585609

Alignment:
DTTGTTTACSBTBB-
CCWTTGTYATGCAAA

Original motif     Consensus sequence: BHADSGTAAACAAD Reverse complement motif     Consensus sequence: DTTGTTTACSBTBB

Dataset #: 3
Motif ID: 68
Motif name: HNF1A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.59033

Alignment:
GGTTAATDATTAMC-
CCWTTGTYATGCAAA

Original motif     Consensus sequence: GGTTAATDATTAMC Reverse complement motif     Consensus sequence: GYTAATDATTAACC

Dataset #: 3 Motif ID: 77 Motif name: Sox5

Original motif     Consensus sequence: HAACAAT Reverse complement motif     Consensus sequence: ATTGTTH

Best Matches for Motif ID 77 (Highest to Lowest)

Dataset #: 3
Motif ID: 87
Motif name: SOX9
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0

Alignment:
CMATTGTTH
--ATTGTTH

Original motif     Consensus sequence: DAACAATRG Reverse complement motif     Consensus sequence: CMATTGTTH

Dataset #: 3
Motif ID: 73
Motif name: SRY
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0011033

Alignment:
ATTGTTWDB
ATTGTTH--

Original motif     Consensus sequence: BDWAACAAT Reverse complement motif     Consensus sequence: ATTGTTWDB

Dataset #: 3
Motif ID: 76
Motif name: Sox2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0.022869

Alignment:
TTTGCATMACAAWGG
--HAACAAT------

Original motif     Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif     Consensus sequence: TTTGCATMACAAWGG

Dataset #: 3
Motif ID: 70
Motif name: Foxq1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0242658

Alignment:
HATTGTTTATW
---ATTGTTH-

Original motif     Consensus sequence: HATTGTTTATW Reverse complement motif     Consensus sequence: WATAAACAATH

Dataset #: 4
Motif ID: 89
Motif name: aaACAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.0278776

Alignment:
BHGTTTTGTTT
----ATTGTTH

Original motif     Consensus sequence: AAACAAAACHV Reverse complement motif     Consensus sequence: BHGTTTTGTTT

Dataset #: 3 Motif ID: 78 Motif name: RORA_1

Original motif     Consensus sequence: AWVDAGGTCA Reverse complement motif     Consensus sequence: TGACCTDVWT

Best Matches for Motif ID 78 (Highest to Lowest)

Dataset #: 3
Motif ID: 84
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.05425

Alignment:
AAAGGTCAAAGGTCAAC
-----AWVDAGGTCA--

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 83
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0654808

Alignment:
AKGYYCAAAGRTCA
----AWVDAGGTCA

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0688859

Alignment:
HBYGAGCTGGBB
--TGACCTDVWT

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 4
Motif ID: 122
Motif name: hsCCAGGCCTGGsr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0826087

Alignment:
HVCCAGGCCTGGBD
----TGACCTDVWT

Original motif     Consensus sequence: HVCCAGGCCTGGBD Reverse complement motif     Consensus sequence: HBCCAGGCCTGGVD

Dataset #: 3
Motif ID: 76
Motif name: Sox2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0865719

Alignment:
TTTGCATMACAAWGG
----AWVDAGGTCA-

Original motif     Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif     Consensus sequence: TTTGCATMACAAWGG

Dataset #: 3 Motif ID: 79 Motif name: Prrx2

Original motif     Consensus sequence: AATTA Reverse complement motif     Consensus sequence: TAATT

Best Matches for Motif ID 79 (Highest to Lowest)

Dataset #: 4
Motif ID: 106
Motif name: wtAATTAAtw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 5
Similarity score: 0.00550847

Alignment:
DTAATTAATH
--AATTA---

Original motif     Consensus sequence: DTAATTAATH Reverse complement motif     Consensus sequence: HATTAATTAD

Dataset #: 3
Motif ID: 66
Motif name: Lhx3
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 5
Similarity score: 0.00864407

Alignment:
BMWTAATTAATTW
-------TAATT-

Original motif     Consensus sequence: WAATTAATTAWYB Reverse complement motif     Consensus sequence: BMWTAATTAATTW

Dataset #: 3
Motif ID: 85
Motif name: Nobox
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 5
Similarity score: 0.0115968

Alignment:
TAATTRSY
TAATT---

Original motif     Consensus sequence: TAATTRSY Reverse complement motif     Consensus sequence: MSMAATTA

Dataset #: 4
Motif ID: 125
Motif name: wwTAATwwATTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 5
Similarity score: 0.0417489

Alignment:
HHTAATWWATTADD
--TAATT-------

Original motif     Consensus sequence: DDTAATWWATTAHH Reverse complement motif     Consensus sequence: HHTAATWWATTADD

Dataset #: 3
Motif ID: 68
Motif name: HNF1A
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 5
Similarity score: 0.0434826

Alignment:
GYTAATDATTAACC
---AATTA------

Original motif     Consensus sequence: GGTTAATDATTAMC Reverse complement motif     Consensus sequence: GYTAATDATTAACC

Dataset #: 3 Motif ID: 80 Motif name: Pou5f1

Original motif     Consensus sequence: CWTTGTHATGCAAAT Reverse complement motif     Consensus sequence: ATTTGCATHACAAWG

Best Matches for Motif ID 80 (Highest to Lowest)

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 15
Similarity score: 0.0828317

Alignment:
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC
----ATTTGCATHACAAWG-----------

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 3
Motif ID: 76
Motif name: Sox2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.5

Alignment:
CCWTTGTYATGCAAA-
-CWTTGTHATGCAAAT

Original motif     Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif     Consensus sequence: TTTGCATMACAAWGG

Dataset #: 3
Motif ID: 75
Motif name: FOXF2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.591766

Alignment:
-DTTGTTTACSBTBB
ATTTGCATHACAAWG

Original motif     Consensus sequence: BHADSGTAAACAAD Reverse complement motif     Consensus sequence: DTTGTTTACSBTBB

Dataset #: 4
Motif ID: 98
Motif name: myyCCCACmTGCmyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.592463

Alignment:
HBCCCCACMTGCMHV-
-CWTTGTHATGCAAAT

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Dataset #: 4
Motif ID: 118
Motif name: yrCACATGCATGTGyr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 1.07966

Alignment:
--DVCACATGCATGTGBH
CWTTGTHATGCAAAT---

Original motif     Consensus sequence: HVCACATGCATGTGBD Reverse complement motif     Consensus sequence: DVCACATGCATGTGBH

Dataset #: 3 Motif ID: 81 Motif name: Pax4

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Best Matches for Motif ID 81 (Highest to Lowest)

Dataset #: 3
Motif ID: 62
Motif name: TBP
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0350174

Alignment:
STATAAAWRVVVVBV---------------
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC

Original motif     Consensus sequence: STATAAAWRVVVVBV Reverse complement motif     Consensus sequence: VBVVVVMWTTTATAS

Dataset #: 4
Motif ID: 98
Motif name: myyCCCACmTGCmyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0514106

Alignment:
---------------HBCCCCACMTGCMHV
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Dataset #: 2
Motif ID: 59
Motif name: Motif 59
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.542018

Alignment:
----------------CTBCCTCHSYCYCC
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC

Original motif     Consensus sequence: CTBCCTCHSYCYCC Reverse complement motif     Consensus sequence: GGMGKSHGAGGBAG

Dataset #: 4
Motif ID: 125
Motif name: wwTAATwwATTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.557646

Alignment:
----------------HHTAATWWATTADD
GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Original motif     Consensus sequence: DDTAATWWATTAHH Reverse complement motif     Consensus sequence: HHTAATWWATTADD

Dataset #: 3
Motif ID: 68
Motif name: HNF1A
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.564862

Alignment:
----------------GYTAATDATTAACC
GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Original motif     Consensus sequence: GGTTAATDATTAMC Reverse complement motif     Consensus sequence: GYTAATDATTAACC

Dataset #: 3 Motif ID: 82 Motif name: HNF1B

Original motif     Consensus sequence: TTAATRWTTAAC Reverse complement motif     Consensus sequence: GTTAAWKATTAA

Best Matches for Motif ID 82 (Highest to Lowest)

Dataset #: 3
Motif ID: 68
Motif name: HNF1A
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0255432

Alignment:
GYTAATDATTAACC
-TTAATRWTTAAC-

Original motif     Consensus sequence: GGTTAATDATTAMC Reverse complement motif     Consensus sequence: GYTAATDATTAACC

Dataset #: 4
Motif ID: 125
Motif name: wwTAATwwATTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0657822

Alignment:
DDTAATWWATTAHH
-GTTAAWKATTAA-

Original motif     Consensus sequence: DDTAATWWATTAHH Reverse complement motif     Consensus sequence: HHTAATWWATTADD

Dataset #: 3
Motif ID: 84
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0685194

Alignment:
AAAGGTCAAAGGTCAAC
----GTTAAWKATTAA-

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 66
Motif name: Lhx3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0745842

Alignment:
WAATTAATTAWYB
TTAATRWTTAAC-

Original motif     Consensus sequence: WAATTAATTAWYB Reverse complement motif     Consensus sequence: BMWTAATTAATTW

Dataset #: 2
Motif ID: 60
Motif name: Motif 60
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0845958

Alignment:
AADAAAAMAAAAAM
-GTTAAWKATTAA-

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Dataset #: 3 Motif ID: 83 Motif name: NR2F1

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Best Matches for Motif ID 83 (Highest to Lowest)

Dataset #: 3
Motif ID: 84
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0174588

Alignment:
GTTGACCTTTGACCTTT
--TGAMCTTTGMMCYT-

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 14
Similarity score: 0.0713206

Alignment:
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC
-------TGAMCTTTGMMCYT---------

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 4
Motif ID: 98
Motif name: myyCCCACmTGCmyr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0745302

Alignment:
HBCCCCACMTGCMHV
AKGYYCAAAGRTCA-

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Dataset #: 3
Motif ID: 71
Motif name: Evi1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 1.06838

Alignment:
--TBTTATCTTMTCTT
TGAMCTTTGMMCYT--

Original motif     Consensus sequence: AAGAYAAGATAABA Reverse complement motif     Consensus sequence: TBTTATCTTMTCTT

Dataset #: 3
Motif ID: 68
Motif name: HNF1A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 1.06886

Alignment:
GGTTAATDATTAMC--
--TGAMCTTTGMMCYT

Original motif     Consensus sequence: GGTTAATDATTAMC Reverse complement motif     Consensus sequence: GYTAATDATTAACC

Dataset #: 3 Motif ID: 84 Motif name: NR1H2RXRA

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Best Matches for Motif ID 84 (Highest to Lowest)

Dataset #: 3
Motif ID: 68
Motif name: HNF1A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0896514

Alignment:
---GGTTAATDATTAMC
AAAGGTCAAAGGTCAAC

Original motif     Consensus sequence: GGTTAATDATTAMC Reverse complement motif     Consensus sequence: GYTAATDATTAACC

Dataset #: 3
Motif ID: 75
Motif name: FOXF2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.595213

Alignment:
----DTTGTTTACSBTBB
GTTGACCTTTGACCTTT-

Original motif     Consensus sequence: BHADSGTAAACAAD Reverse complement motif     Consensus sequence: DTTGTTTACSBTBB

Dataset #: 3
Motif ID: 76
Motif name: Sox2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 1.0817

Alignment:
-----TTTGCATMACAAWGG
AAAGGTCAAAGGTCAAC---

Original motif     Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif     Consensus sequence: TTTGCATMACAAWGG

Dataset #: 3
Motif ID: 82
Motif name: HNF1B
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 1.0906

Alignment:
-----TTAATRWTTAAC
AAAGGTCAAAGGTCAAC

Original motif     Consensus sequence: TTAATRWTTAAC Reverse complement motif     Consensus sequence: GTTAAWKATTAA

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 1.09978

Alignment:
HBYGAGCTGGBB-----
GTTGACCTTTGACCTTT

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 3 Motif ID: 85 Motif name: Nobox

Original motif     Consensus sequence: TAATTRSY Reverse complement motif     Consensus sequence: MSMAATTA

Best Matches for Motif ID 85 (Highest to Lowest)

Dataset #: 3
Motif ID: 66
Motif name: Lhx3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0419408

Alignment:
WAATTAATTAWYB
----TAATTRSY-

Original motif     Consensus sequence: WAATTAATTAWYB Reverse complement motif     Consensus sequence: BMWTAATTAATTW

Dataset #: 4
Motif ID: 125
Motif name: wwTAATwwATTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0591612

Alignment:
HHTAATWWATTADD
------TAATTRSY

Original motif     Consensus sequence: DDTAATWWATTAHH Reverse complement motif     Consensus sequence: HHTAATWWATTADD

Dataset #: 3
Motif ID: 62
Motif name: TBP
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0604219

Alignment:
VBVVVVMWTTTATAS
----MSMAATTA---

Original motif     Consensus sequence: STATAAAWRVVVVBV Reverse complement motif     Consensus sequence: VBVVVVMWTTTATAS

Dataset #: 4
Motif ID: 106
Motif name: wtAATTAAtw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0649275

Alignment:
DTAATTAATH
-TAATTRSY-

Original motif     Consensus sequence: DTAATTAATH Reverse complement motif     Consensus sequence: HATTAATTAD

Dataset #: 3
Motif ID: 68
Motif name: HNF1A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0652412

Alignment:
GGTTAATDATTAMC
------TAATTRSY

Original motif     Consensus sequence: GGTTAATDATTAMC Reverse complement motif     Consensus sequence: GYTAATDATTAACC

Dataset #: 3 Motif ID: 86 Motif name: FOXO3

Original motif     Consensus sequence: KGTAAACA Reverse complement motif     Consensus sequence: TGTTTACR

Best Matches for Motif ID 86 (Highest to Lowest)

Dataset #: 3
Motif ID: 75
Motif name: FOXF2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0236411

Alignment:
DTTGTTTACSBTBB
--TGTTTACR----

Original motif     Consensus sequence: BHADSGTAAACAAD Reverse complement motif     Consensus sequence: DTTGTTTACSBTBB

Dataset #: 3
Motif ID: 70
Motif name: Foxq1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0397436

Alignment:
HATTGTTTATW
TGTTTACR---

Original motif     Consensus sequence: HATTGTTTATW Reverse complement motif     Consensus sequence: WATAAACAATH

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.054763

Alignment:
DHATKTTTAHH
---TGTTTACR

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 3
Motif ID: 67
Motif name: FOXI1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0656948

Alignment:
AAAMAAAMADBY
---KGTAAACA-

Original motif     Consensus sequence: KBDTRTTTRTTT Reverse complement motif     Consensus sequence: AAAMAAAMADBY

Dataset #: 3
Motif ID: 61
Motif name: MEF2A
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0727619

Alignment:
CTATTTWTAG
-TGTTTACR-

Original motif     Consensus sequence: CTATTTWTAG Reverse complement motif     Consensus sequence: CTAWAAATAG

Dataset #: 3 Motif ID: 87 Motif name: SOX9

Original motif     Consensus sequence: DAACAATRG Reverse complement motif     Consensus sequence: CMATTGTTH

Best Matches for Motif ID 87 (Highest to Lowest)

Dataset #: 3
Motif ID: 76
Motif name: Sox2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 9
Similarity score: 0.018186

Alignment:
TTTGCATMACAAWGG
DAACAATRG------

Original motif     Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif     Consensus sequence: TTTGCATMACAAWGG

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 22
Number of overlap: 9
Similarity score: 0.0583456

Alignment:
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC
DAACAATRG---------------------

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 4
Motif ID: 89
Motif name: aaACAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 9
Similarity score: 0.0599655

Alignment:
AAACAAAACHV
DAACAATRG--

Original motif     Consensus sequence: AAACAAAACHV Reverse complement motif     Consensus sequence: BHGTTTTGTTT

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 9
Similarity score: 0.0642936

Alignment:
DHATKTTTAHH
CMATTGTTH--

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 3
Motif ID: 61
Motif name: MEF2A
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 9
Similarity score: 0.0646581

Alignment:
CTATTTWTAG
-CMATTGTTH

Original motif     Consensus sequence: CTATTTWTAG Reverse complement motif     Consensus sequence: CTAWAAATAG

Dataset #: 4 Motif ID: 88 Motif name: ygCTyTTCsg

Original motif     Consensus sequence: HDCTYTTCGB Reverse complement motif     Consensus sequence: BCGAAMAGHH

Best Matches for Motif ID 88 (Highest to Lowest)

Dataset #: 4
Motif ID: 113
Motif name: htCTGyKTCbt
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0278763

Alignment:
HVGAAMCAGVH
-BCGAAMAGHH

Original motif     Consensus sequence: HBCTGYTTCBH Reverse complement motif     Consensus sequence: HVGAAMCAGVH

Dataset #: 3
Motif ID: 67
Motif name: FOXI1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0294361

Alignment:
AAAMAAAMADBY
--BCGAAMAGHH

Original motif     Consensus sequence: KBDTRTTTRTTT Reverse complement motif     Consensus sequence: AAAMAAAMADBY

Dataset #: 4
Motif ID: 109
Motif name: aaCAAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0382901

Alignment:
HHCAAAAACHH
-BCGAAMAGHH

Original motif     Consensus sequence: HHCAAAAACHH Reverse complement motif     Consensus sequence: HHGTTTTTGHH

Dataset #: 4
Motif ID: 91
Motif name: wtATTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0393404

Alignment:
HWTAAAATHD
BCGAAMAGHH

Original motif     Consensus sequence: DHATTTTAWH Reverse complement motif     Consensus sequence: HWTAAAATHD

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0400249

Alignment:
HBYGAGCTGGBB
-BCGAAMAGHH-

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 4 Motif ID: 89 Motif name: aaACAAAACaa

Original motif     Consensus sequence: AAACAAAACHV Reverse complement motif     Consensus sequence: BHGTTTTGTTT

Best Matches for Motif ID 89 (Highest to Lowest)

Dataset #: 4
Motif ID: 109
Motif name: aaCAAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.00582159

Alignment:
HHGTTTTTGHH
BHGTTTTGTTT

Original motif     Consensus sequence: HHCAAAAACHH Reverse complement motif     Consensus sequence: HHGTTTTTGHH

Dataset #: 3
Motif ID: 67
Motif name: FOXI1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0320461

Alignment:
KBDTRTTTRTTT
BHGTTTTGTTT-

Original motif     Consensus sequence: KBDTRTTTRTTT Reverse complement motif     Consensus sequence: AAAMAAAMADBY

Dataset #: 2
Motif ID: 60
Motif name: Motif 60
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.039575

Alignment:
AADAAAAMAAAAAM
--AAACAAAACHV-

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Dataset #: 3
Motif ID: 75
Motif name: FOXF2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0401124

Alignment:
BHADSGTAAACAAD
--AAACAAAACHV-

Original motif     Consensus sequence: BHADSGTAAACAAD Reverse complement motif     Consensus sequence: DTTGTTTACSBTBB

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0486334

Alignment:
DHATKTTTAHH
BHGTTTTGTTT

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 4 Motif ID: 90 Motif name: ymTACATAyw

Original motif     Consensus sequence: HHTACATABD Reverse complement motif     Consensus sequence: DBTATGTAHH

Best Matches for Motif ID 90 (Highest to Lowest)

Dataset #: 4
Motif ID: 114
Motif name: awAACAcAAwa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0626629

Alignment:
BDTTGTGTTDD
-DBTATGTAHH

Original motif     Consensus sequence: DDAACACAADV Reverse complement motif     Consensus sequence: BDTTGTGTTDD

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0690336

Alignment:
HHTAAARATHD
HHTACATABD-

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 3
Motif ID: 67
Motif name: FOXI1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0763781

Alignment:
AAAMAAAMADBY
-HHTACATABD-

Original motif     Consensus sequence: KBDTRTTTRTTT Reverse complement motif     Consensus sequence: AAAMAAAMADBY

Dataset #: 3
Motif ID: 75
Motif name: FOXF2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0772253

Alignment:
DTTGTTTACSBTBB
DBTATGTAHH----

Original motif     Consensus sequence: BHADSGTAAACAAD Reverse complement motif     Consensus sequence: DTTGTTTACSBTBB

Dataset #: 4
Motif ID: 100
Motif name: wwTAATAAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0773471

Alignment:
DDTTATTAHD
DBTATGTAHH

Original motif     Consensus sequence: DHTAATAADD Reverse complement motif     Consensus sequence: DDTTATTAHD

Dataset #: 4 Motif ID: 91 Motif name: wtATTTTAww

Original motif     Consensus sequence: DHATTTTAWH Reverse complement motif     Consensus sequence: HWTAAAATHD

Best Matches for Motif ID 91 (Highest to Lowest)

Dataset #: 4
Motif ID: 100
Motif name: wwTAATAAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0307554

Alignment:
DHTAATAADD
HWTAAAATHD

Original motif     Consensus sequence: DHTAATAADD Reverse complement motif     Consensus sequence: DDTTATTAHD

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.031047

Alignment:
DHATKTTTAHH
DHATTTTAWH-

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 4
Motif ID: 106
Motif name: wtAATTAAtw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0371798

Alignment:
DTAATTAATH
DHATTTTAWH

Original motif     Consensus sequence: DTAATTAATH Reverse complement motif     Consensus sequence: HATTAATTAD

Dataset #: 4
Motif ID: 95
Motif name: rmATGCTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0404266

Alignment:
DHATGCTADH
DHATTTTAWH

Original motif     Consensus sequence: DHATGCTADH Reverse complement motif     Consensus sequence: HDTAGCATHD

Dataset #: 4
Motif ID: 89
Motif name: aaACAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0448101

Alignment:
BHGTTTTGTTT
-DHATTTTAWH

Original motif     Consensus sequence: AAACAAAACHV Reverse complement motif     Consensus sequence: BHGTTTTGTTT

Dataset #: 4 Motif ID: 92 Motif name: cgAKGyCAcg

Original motif     Consensus sequence: CGAGGYCACV Reverse complement motif     Consensus sequence: VGTGMCCTCG

Best Matches for Motif ID 92 (Highest to Lowest)

Dataset #: 4
Motif ID: 97
Motif name: sgArGCCACg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.00323214

Alignment:
SGARGCCACG
CGAGGYCACV

Original motif     Consensus sequence: SGARGCCACG Reverse complement motif     Consensus sequence: CGTGGCKTCS

Dataset #: 4
Motif ID: 107
Motif name: crCGyGCRcg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.039949

Alignment:
CGTGCACGCG
VGTGMCCTCG

Original motif     Consensus sequence: CGCGTGCACG Reverse complement motif     Consensus sequence: CGTGCACGCG

Dataset #: 3
Motif ID: 84
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 10
Similarity score: 0.0444539

Alignment:
GTTGACCTTTGACCTTT
VGTGMCCTCG-------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 4
Motif ID: 95
Motif name: rmATGCTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0540906

Alignment:
DHATGCTADH
CGAGGYCACV

Original motif     Consensus sequence: DHATGCTADH Reverse complement motif     Consensus sequence: HDTAGCATHD

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0546695

Alignment:
HBYGAGCTGGBB
VGTGMCCTCG--

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 4 Motif ID: 93 Motif name: cmCARCACTwr

Original motif     Consensus sequence: BHCAGCACTHV Reverse complement motif     Consensus sequence: VHAGTGCTGHB

Best Matches for Motif ID 93 (Highest to Lowest)

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.00936148

Alignment:
BBCCAGCTCMBD
-BHCAGCACTHV

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 4
Motif ID: 110
Motif name: cmCCACACCcm
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0121475

Alignment:
HVCCACACCBV
BHCAGCACTHV

Original motif     Consensus sequence: HVCCACACCBV Reverse complement motif     Consensus sequence: VBGGTGTGGBD

Dataset #: 4
Motif ID: 121
Motif name: ctGAGTCATCkb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0295417

Alignment:
HDGAGTCATCDB
-VHAGTGCTGHB

Original motif     Consensus sequence: HDGAGTCATCDB Reverse complement motif     Consensus sequence: BHGATGACTCDD

Dataset #: 4
Motif ID: 122
Motif name: hsCCAGGCCTGGsr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0336897

Alignment:
HBCCAGGCCTGGVD
--VHAGTGCTGHB-

Original motif     Consensus sequence: HVCCAGGCCTGGBD Reverse complement motif     Consensus sequence: HBCCAGGCCTGGVD

Dataset #: 4
Motif ID: 103
Motif name: csCCaGCTCCCgs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0373286

Alignment:
BBCCAGCTCCCVB
-BHCAGCACTHV-

Original motif     Consensus sequence: BBCCAGCTCCCVB Reverse complement motif     Consensus sequence: BVGGGAGCTGGBB

Dataset #: 4 Motif ID: 94 Motif name: yrTCWCAAyr

Original motif     Consensus sequence: HVTCACAAYD Reverse complement motif     Consensus sequence: HKTTGTGABH

Best Matches for Motif ID 94 (Highest to Lowest)

Dataset #: 4
Motif ID: 114
Motif name: awAACAcAAwa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.00495535

Alignment:
BDTTGTGTTDD
HKTTGTGABH-

Original motif     Consensus sequence: DDAACACAADV Reverse complement motif     Consensus sequence: BDTTGTGTTDD

Dataset #: 3
Motif ID: 76
Motif name: Sox2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.00762497

Alignment:
CCWTTGTYATGCAAA
----HKTTGTGABH-

Original motif     Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif     Consensus sequence: TTTGCATMACAAWGG

Dataset #: 4
Motif ID: 100
Motif name: wwTAATAAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0114769

Alignment:
DDTTATTAHD
HKTTGTGABH

Original motif     Consensus sequence: DHTAATAADD Reverse complement motif     Consensus sequence: DDTTATTAHD

Dataset #: 3
Motif ID: 80
Motif name: Pou5f1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0127574

Alignment:
CWTTGTHATGCAAAT
-----HKTTGTGABH

Original motif     Consensus sequence: CWTTGTHATGCAAAT Reverse complement motif     Consensus sequence: ATTTGCATHACAAWG

Dataset #: 4
Motif ID: 89
Motif name: aaACAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0208363

Alignment:
AAACAAAACHV
HVTCACAAYD-

Original motif     Consensus sequence: AAACAAAACHV Reverse complement motif     Consensus sequence: BHGTTTTGTTT

Dataset #: 4 Motif ID: 95 Motif name: rmATGCTAww

Original motif     Consensus sequence: DHATGCTADH Reverse complement motif     Consensus sequence: HDTAGCATHD

Best Matches for Motif ID 95 (Highest to Lowest)

Dataset #: 4
Motif ID: 91
Motif name: wtATTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.00863735

Alignment:
DHATTTTAWH
DHATGCTADH

Original motif     Consensus sequence: DHATTTTAWH Reverse complement motif     Consensus sequence: HWTAAAATHD

Dataset #: 4
Motif ID: 115
Motif name: ysCmAGCACwy
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0142021

Alignment:
DHGTGCTRGVH
DHATGCTADH-

Original motif     Consensus sequence: HVCMAGCACHH Reverse complement motif     Consensus sequence: DHGTGCTRGVH

Dataset #: 3
Motif ID: 80
Motif name: Pou5f1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0215325

Alignment:
ATTTGCATHACAAWG
HDTAGCATHD-----

Original motif     Consensus sequence: CWTTGTHATGCAAAT Reverse complement motif     Consensus sequence: ATTTGCATHACAAWG

Dataset #: 4
Motif ID: 123
Motif name: asMAAGCTTKst
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0234838

Alignment:
HBCAAGCTTGVD
-DHATGCTADH-

Original motif     Consensus sequence: HBCAAGCTTGVD Reverse complement motif     Consensus sequence: DVCAAGCTTGBH

Dataset #: 4
Motif ID: 93
Motif name: cmCARCACTwr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0266703

Alignment:
VHAGTGCTGHB
DHATGCTADH-

Original motif     Consensus sequence: BHCAGCACTHV Reverse complement motif     Consensus sequence: VHAGTGCTGHB

Dataset #: 4 Motif ID: 96 Motif name: mdAAcCAACG

Original motif     Consensus sequence: VDAACCAACG Reverse complement motif     Consensus sequence: CGTTGGTTDB

Best Matches for Motif ID 96 (Highest to Lowest)

Dataset #: 4
Motif ID: 97
Motif name: sgArGCCACg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0161902

Alignment:
SGARGCCACG
VDAACCAACG

Original motif     Consensus sequence: SGARGCCACG Reverse complement motif     Consensus sequence: CGTGGCKTCS

Dataset #: 2
Motif ID: 60
Motif name: Motif 60
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0244161

Alignment:
YTTTTTRTTTTDTT
--CGTTGGTTDB--

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Dataset #: 4
Motif ID: 106
Motif name: wtAATTAAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0244247

Alignment:
HATTAATTAD
CGTTGGTTDB

Original motif     Consensus sequence: DTAATTAATH Reverse complement motif     Consensus sequence: HATTAATTAD

Dataset #: 3
Motif ID: 70
Motif name: Foxq1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0266383

Alignment:
HATTGTTTATW
-CGTTGGTTDB

Original motif     Consensus sequence: HATTGTTTATW Reverse complement motif     Consensus sequence: WATAAACAATH

Dataset #: 4
Motif ID: 113
Motif name: htCTGyKTCbt
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0296542

Alignment:
HVGAAMCAGVH
-VDAACCAACG

Original motif     Consensus sequence: HBCTGYTTCBH Reverse complement motif     Consensus sequence: HVGAAMCAGVH

Dataset #: 4 Motif ID: 97 Motif name: sgArGCCACg

Original motif     Consensus sequence: SGARGCCACG Reverse complement motif     Consensus sequence: CGTGGCKTCS

Best Matches for Motif ID 97 (Highest to Lowest)

Dataset #: 4
Motif ID: 92
Motif name: cgAKGyCAcg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0020736

Alignment:
CGAGGYCACV
SGARGCCACG

Original motif     Consensus sequence: CGAGGYCACV Reverse complement motif     Consensus sequence: VGTGMCCTCG

Dataset #: 4
Motif ID: 96
Motif name: mdAAcCAACG
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0408537

Alignment:
VDAACCAACG
SGARGCCACG

Original motif     Consensus sequence: VDAACCAACG Reverse complement motif     Consensus sequence: CGTTGGTTDB

Dataset #: 4
Motif ID: 95
Motif name: rmATGCTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0472561

Alignment:
HDTAGCATHD
CGTGGCKTCS

Original motif     Consensus sequence: DHATGCTADH Reverse complement motif     Consensus sequence: HDTAGCATHD

Dataset #: 4
Motif ID: 126
Motif name: yvTGCAGsCAcg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.057998

Alignment:
VBTGSCTGCAVB
CGTGGCKTCS--

Original motif     Consensus sequence: BVTGCAGSCABV Reverse complement motif     Consensus sequence: VBTGSCTGCAVB

Dataset #: 4
Motif ID: 116
Motif name: dyCTGCyTCyc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0617012

Alignment:
BHGAKGCAGHH
-SGARGCCACG

Original motif     Consensus sequence: DHCTGCYTCHB Reverse complement motif     Consensus sequence: BHGAKGCAGHH

Dataset #: 4 Motif ID: 98 Motif name: myyCCCACmTGCmyr

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Best Matches for Motif ID 98 (Highest to Lowest)

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 15
Similarity score: 0.0499349

Alignment:
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC
-------HBCCCCACMTGCMHV--------

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 4
Motif ID: 118
Motif name: yrCACATGCATGTGyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0613869

Alignment:
HVCACATGCATGTGBD
-HBCCCCACMTGCMHV

Original motif     Consensus sequence: HVCACATGCATGTGBD Reverse complement motif     Consensus sequence: DVCACATGCATGTGBH

Dataset #: 4
Motif ID: 122
Motif name: hsCCAGGCCTGGsr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.538726

Alignment:
HVCCAGGCCTGGBD-
HBCCCCACMTGCMHV

Original motif     Consensus sequence: HVCCAGGCCTGGBD Reverse complement motif     Consensus sequence: HBCCAGGCCTGGVD

Dataset #: 2
Motif ID: 59
Motif name: Motif 59
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.560094

Alignment:
-CTBCCTCHSYCYCC
HBCCCCACMTGCMHV

Original motif     Consensus sequence: CTBCCTCHSYCYCC Reverse complement motif     Consensus sequence: GGMGKSHGAGGBAG

Dataset #: 2
Motif ID: 58
Motif name: Motif 58
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.57014

Alignment:
-CACACACACACACA
HBCCCCACMTGCMHV

Original motif     Consensus sequence: CACACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTGTG

Dataset #: 4 Motif ID: 99 Motif name: graGGGGGArr

Original motif     Consensus sequence: DVAGGGGGADD Reverse complement motif     Consensus sequence: HDTCCCCCTVH

Best Matches for Motif ID 99 (Highest to Lowest)

Dataset #: 4
Motif ID: 127
Motif name: rryCAGGGAyw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0288287

Alignment:
DDYCAGGGAHD
DVAGGGGGADD

Original motif     Consensus sequence: DDYCAGGGAHD Reverse complement motif     Consensus sequence: DHTCCCTGMDD

Dataset #: 2
Motif ID: 59
Motif name: Motif 59
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0416239

Alignment:
GGMGKSHGAGGBAG
---DVAGGGGGADD

Original motif     Consensus sequence: CTBCCTCHSYCYCC Reverse complement motif     Consensus sequence: GGMGKSHGAGGBAG

Dataset #: 4
Motif ID: 110
Motif name: cmCCACACCcm
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0422985

Alignment:
HVCCACACCBV
HDTCCCCCTVH

Original motif     Consensus sequence: HVCCACACCBV Reverse complement motif     Consensus sequence: VBGGTGTGGBD

Dataset #: 4
Motif ID: 112
Motif name: ctGAGTkTGAgg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.042367

Alignment:
VBGAGTKTGADD
-DVAGGGGGADD

Original motif     Consensus sequence: VBGAGTKTGADD Reverse complement motif     Consensus sequence: HHTCARACTCVV

Dataset #: 4
Motif ID: 111
Motif name: ccCCmCaCCCCcc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0428468

Alignment:
DBGGGGTGGGGBD
DVAGGGGGADD--

Original motif     Consensus sequence: HBCCCCACCCCBH Reverse complement motif     Consensus sequence: DBGGGGTGGGGBD

Dataset #: 4 Motif ID: 100 Motif name: wwTAATAAww

Original motif     Consensus sequence: DHTAATAADD Reverse complement motif     Consensus sequence: DDTTATTAHD

Best Matches for Motif ID 100 (Highest to Lowest)

Dataset #: 4
Motif ID: 91
Motif name: wtATTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0241522

Alignment:
HWTAAAATHD
DHTAATAADD

Original motif     Consensus sequence: DHATTTTAWH Reverse complement motif     Consensus sequence: HWTAAAATHD

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0255442

Alignment:
HHTAAARATHD
DHTAATAADD-

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 4
Motif ID: 125
Motif name: wwTAATwwATTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0362107

Alignment:
HHTAATWWATTADD
DHTAATAADD----

Original motif     Consensus sequence: DDTAATWWATTAHH Reverse complement motif     Consensus sequence: HHTAATWWATTADD

Dataset #: 4
Motif ID: 106
Motif name: wtAATTAAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0364833

Alignment:
HATTAATTAD
DDTTATTAHD

Original motif     Consensus sequence: DTAATTAATH Reverse complement motif     Consensus sequence: HATTAATTAD

Dataset #: 4
Motif ID: 109
Motif name: aaCAAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0471554

Alignment:
HHCAAAAACHH
DHTAATAADD-

Original motif     Consensus sequence: HHCAAAAACHH Reverse complement motif     Consensus sequence: HHGTTTTTGHH

Dataset #: 4 Motif ID: 101 Motif name: csCACCCCgg

Original motif     Consensus sequence: HVCACCCCBB Reverse complement motif     Consensus sequence: BBGGGGTGVD

Best Matches for Motif ID 101 (Highest to Lowest)

Dataset #: 4
Motif ID: 111
Motif name: ccCCmCaCCCCcc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0

Alignment:
HBCCCCACCCCBH
---HVCACCCCBB

Original motif     Consensus sequence: HBCCCCACCCCBH Reverse complement motif     Consensus sequence: DBGGGGTGGGGBD

Dataset #: 4
Motif ID: 110
Motif name: cmCCACACCcm
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.00930301

Alignment:
HVCCACACCBV
-HVCACCCCBB

Original motif     Consensus sequence: HVCCACACCBV Reverse complement motif     Consensus sequence: VBGGTGTGGBD

Dataset #: 4
Motif ID: 99
Motif name: graGGGGGArr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0256956

Alignment:
HDTCCCCCTVH
-HVCACCCCBB

Original motif     Consensus sequence: DVAGGGGGADD Reverse complement motif     Consensus sequence: HDTCCCCCTVH

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.033038

Alignment:
HBYGAGCTGGBB
-BBGGGGTGVD-

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 4
Motif ID: 93
Motif name: cmCARCACTwr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0377738

Alignment:
BHCAGCACTHV
HVCACCCCBB-

Original motif     Consensus sequence: BHCAGCACTHV Reverse complement motif     Consensus sequence: VHAGTGCTGHB

Dataset #: 4 Motif ID: 102 Motif name: ssCkGGYCCCsg

Original motif     Consensus sequence: BBCKGGCCCCVV Reverse complement motif     Consensus sequence: VVGGGGCCRGBB

Best Matches for Motif ID 102 (Highest to Lowest)

Dataset #: 4
Motif ID: 103
Motif name: csCCaGCTCCCgs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.00699729

Alignment:
BVGGGAGCTGGBB
-VVGGGGCCRGBB

Original motif     Consensus sequence: BBCCAGCTCCCVB Reverse complement motif     Consensus sequence: BVGGGAGCTGGBB

Dataset #: 4
Motif ID: 124
Motif name: cswGGGCCCwsg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.00901563

Alignment:
VVWGGGCCCWBB
BBCKGGCCCCVV

Original motif     Consensus sequence: VVWGGGCCCWBB Reverse complement motif     Consensus sequence: BBWGGGCCCWVV

Dataset #: 4
Motif ID: 111
Motif name: ccCCmCaCCCCcc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.015463

Alignment:
DBGGGGTGGGGBD
VVGGGGCCRGBB-

Original motif     Consensus sequence: HBCCCCACCCCBH Reverse complement motif     Consensus sequence: DBGGGGTGGGGBD

Dataset #: 4
Motif ID: 122
Motif name: hsCCAGGCCTGGsr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0222107

Alignment:
HVCCAGGCCTGGBD
-BBCKGGCCCCVV-

Original motif     Consensus sequence: HVCCAGGCCTGGBD Reverse complement motif     Consensus sequence: HBCCAGGCCTGGVD

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0277516

Alignment:
BBCCAGCTCMBD
BBCKGGCCCCVV

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 4 Motif ID: 103 Motif name: csCCaGCTCCCgs

Original motif     Consensus sequence: BBCCAGCTCCCVB Reverse complement motif     Consensus sequence: BVGGGAGCTGGBB

Best Matches for Motif ID 103 (Highest to Lowest)

Dataset #: 4
Motif ID: 98
Motif name: myyCCCACmTGCmyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0331906

Alignment:
HBCCCCACMTGCMHV
--BBCCAGCTCCCVB

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Dataset #: 4
Motif ID: 122
Motif name: hsCCAGGCCTGGsr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.033684

Alignment:
HVCCAGGCCTGGBD
-BVGGGAGCTGGBB

Original motif     Consensus sequence: HVCCAGGCCTGGBD Reverse complement motif     Consensus sequence: HBCCAGGCCTGGVD

Dataset #: 4
Motif ID: 111
Motif name: ccCCmCaCCCCcc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0344113

Alignment:
HBCCCCACCCCBH
BBCCAGCTCCCVB

Original motif     Consensus sequence: HBCCCCACCCCBH Reverse complement motif     Consensus sequence: DBGGGGTGGGGBD

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0424871

Alignment:
GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM
--BVGGGAGCTGGBB---------------

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 2
Motif ID: 59
Motif name: Motif 59
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0502084

Alignment:
GGMGKSHGAGGBAG
-BVGGGAGCTGGBB

Original motif     Consensus sequence: CTBCCTCHSYCYCC Reverse complement motif     Consensus sequence: GGMGKSHGAGGBAG

Dataset #: 4 Motif ID: 104 Motif name: cgCCCwGGScsg

Original motif     Consensus sequence: VDCCCWGGGCBB Reverse complement motif     Consensus sequence: BBGCCCWGGGHV

Best Matches for Motif ID 104 (Highest to Lowest)

Dataset #: 4
Motif ID: 111
Motif name: ccCCmCaCCCCcc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0295528

Alignment:
HBCCCCACCCCBH
-VDCCCWGGGCBB

Original motif     Consensus sequence: HBCCCCACCCCBH Reverse complement motif     Consensus sequence: DBGGGGTGGGGBD

Dataset #: 4
Motif ID: 126
Motif name: yvTGCAGsCAcg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0306486

Alignment:
BVTGCAGSCABV
VDCCCWGGGCBB

Original motif     Consensus sequence: BVTGCAGSCABV Reverse complement motif     Consensus sequence: VBTGSCTGCAVB

Dataset #: 4
Motif ID: 103
Motif name: csCCaGCTCCCgs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0384576

Alignment:
BBCCAGCTCCCVB
VDCCCWGGGCBB-

Original motif     Consensus sequence: BBCCAGCTCCCVB Reverse complement motif     Consensus sequence: BVGGGAGCTGGBB

Dataset #: 4
Motif ID: 98
Motif name: myyCCCACmTGCmyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0393753

Alignment:
HBCCCCACMTGCMHV
---VDCCCWGGGCBB

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Dataset #: 2
Motif ID: 59
Motif name: Motif 59
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0399857

Alignment:
CTBCCTCHSYCYCC
--VDCCCWGGGCBB

Original motif     Consensus sequence: CTBCCTCHSYCYCC Reverse complement motif     Consensus sequence: GGMGKSHGAGGBAG

Dataset #: 4 Motif ID: 105 Motif name: ccGCAGCCss

Original motif     Consensus sequence: VCGCAGCCBB Reverse complement motif     Consensus sequence: BBGGCTGCGV

Best Matches for Motif ID 105 (Highest to Lowest)

Dataset #: 4
Motif ID: 126
Motif name: yvTGCAGsCAcg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0

Alignment:
VBTGSCTGCAVB
-BBGGCTGCGV-

Original motif     Consensus sequence: BVTGCAGSCABV Reverse complement motif     Consensus sequence: VBTGSCTGCAVB

Dataset #: 4
Motif ID: 103
Motif name: csCCaGCTCCCgs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0101194

Alignment:
BVGGGAGCTGGBB
BBGGCTGCGV---

Original motif     Consensus sequence: BBCCAGCTCCCVB Reverse complement motif     Consensus sequence: BVGGGAGCTGGBB

Dataset #: 4
Motif ID: 102
Motif name: ssCkGGYCCCsg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0260007

Alignment:
BBCKGGCCCCVV
BBGGCTGCGV--

Original motif     Consensus sequence: BBCKGGCCCCVV Reverse complement motif     Consensus sequence: VVGGGGCCRGBB

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0296738

Alignment:
HBYGAGCTGGBB
--BBGGCTGCGV

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 4
Motif ID: 116
Motif name: dyCTGCyTCyc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0303133

Alignment:
DHCTGCYTCHB
-BBGGCTGCGV

Original motif     Consensus sequence: DHCTGCYTCHB Reverse complement motif     Consensus sequence: BHGAKGCAGHH

Dataset #: 4 Motif ID: 106 Motif name: wtAATTAAtw

Original motif     Consensus sequence: DTAATTAATH Reverse complement motif     Consensus sequence: HATTAATTAD

Best Matches for Motif ID 106 (Highest to Lowest)

Dataset #: 3
Motif ID: 66
Motif name: Lhx3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0302494

Alignment:
BMWTAATTAATTW
-DTAATTAATH--

Original motif     Consensus sequence: WAATTAATTAWYB Reverse complement motif     Consensus sequence: BMWTAATTAATTW

Dataset #: 4
Motif ID: 125
Motif name: wwTAATwwATTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0551105

Alignment:
HHTAATWWATTADD
---HATTAATTAD-

Original motif     Consensus sequence: DDTAATWWATTAHH Reverse complement motif     Consensus sequence: HHTAATWWATTADD

Dataset #: 4
Motif ID: 91
Motif name: wtATTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0562809

Alignment:
DHATTTTAWH
DTAATTAATH

Original motif     Consensus sequence: DHATTTTAWH Reverse complement motif     Consensus sequence: HWTAAAATHD

Dataset #: 4
Motif ID: 100
Motif name: wwTAATAAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0621876

Alignment:
DHTAATAADD
DTAATTAATH

Original motif     Consensus sequence: DHTAATAADD Reverse complement motif     Consensus sequence: DDTTATTAHD

Dataset #: 3
Motif ID: 68
Motif name: HNF1A
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0690833

Alignment:
GGTTAATDATTAMC
----HATTAATTAD

Original motif     Consensus sequence: GGTTAATDATTAMC Reverse complement motif     Consensus sequence: GYTAATDATTAACC

Dataset #: 4 Motif ID: 107 Motif name: crCGyGCRcg

Original motif     Consensus sequence: CGCGTGCACG Reverse complement motif     Consensus sequence: CGTGCACGCG

Best Matches for Motif ID 107 (Highest to Lowest)

Dataset #: 4
Motif ID: 92
Motif name: cgAKGyCAcg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0293056

Alignment:
VGTGMCCTCG
CGTGCACGCG

Original motif     Consensus sequence: CGAGGYCACV Reverse complement motif     Consensus sequence: VGTGMCCTCG

Dataset #: 4
Motif ID: 115
Motif name: ysCmAGCACwy
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0326988

Alignment:
DHGTGCTRGVH
-CGTGCACGCG

Original motif     Consensus sequence: HVCMAGCACHH Reverse complement motif     Consensus sequence: DHGTGCTRGVH

Dataset #: 4
Motif ID: 98
Motif name: myyCCCACmTGCmyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.033442

Alignment:
HBCCCCACMTGCMHV
-----CGCGTGCACG

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Dataset #: 4
Motif ID: 126
Motif name: yvTGCAGsCAcg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0362108

Alignment:
VBTGSCTGCAVB
--CGCGTGCACG

Original motif     Consensus sequence: BVTGCAGSCABV Reverse complement motif     Consensus sequence: VBTGSCTGCAVB

Dataset #: 4
Motif ID: 102
Motif name: ssCkGGYCCCsg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0421604

Alignment:
VVGGGGCCRGBB
--CGTGCACGCG

Original motif     Consensus sequence: BBCKGGCCCCVV Reverse complement motif     Consensus sequence: VVGGGGCCRGBB

Dataset #: 4 Motif ID: 108 Motif name: wwATkTTTAww

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Best Matches for Motif ID 108 (Highest to Lowest)

Dataset #: 3
Motif ID: 70
Motif name: Foxq1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0381631

Alignment:
HATTGTTTATW
DHATKTTTAHH

Original motif     Consensus sequence: HATTGTTTATW Reverse complement motif     Consensus sequence: WATAAACAATH

Dataset #: 4
Motif ID: 109
Motif name: aaCAAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0416262

Alignment:
HHCAAAAACHH
HHTAAARATHD

Original motif     Consensus sequence: HHCAAAAACHH Reverse complement motif     Consensus sequence: HHGTTTTTGHH

Dataset #: 3
Motif ID: 67
Motif name: FOXI1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0453405

Alignment:
KBDTRTTTRTTT
DHATKTTTAHH-

Original motif     Consensus sequence: KBDTRTTTRTTT Reverse complement motif     Consensus sequence: AAAMAAAMADBY

Dataset #: 4
Motif ID: 113
Motif name: htCTGyKTCbt
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0594403

Alignment:
HBCTGYTTCBH
DHATKTTTAHH

Original motif     Consensus sequence: HBCTGYTTCBH Reverse complement motif     Consensus sequence: HVGAAMCAGVH

Dataset #: 3
Motif ID: 62
Motif name: TBP
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0630171

Alignment:
VBVVVVMWTTTATAS
-DHATKTTTAHH---

Original motif     Consensus sequence: STATAAAWRVVVVBV Reverse complement motif     Consensus sequence: VBVVVVMWTTTATAS

Dataset #: 4 Motif ID: 109 Motif name: aaCAAAAACaa

Original motif     Consensus sequence: HHCAAAAACHH Reverse complement motif     Consensus sequence: HHGTTTTTGHH

Best Matches for Motif ID 109 (Highest to Lowest)

Dataset #: 4
Motif ID: 89
Motif name: aaACAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.00652588

Alignment:
BHGTTTTGTTT
HHGTTTTTGHH

Original motif     Consensus sequence: AAACAAAACHV Reverse complement motif     Consensus sequence: BHGTTTTGTTT

Dataset #: 4
Motif ID: 117
Motif name: yaCATAYACay
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0113253

Alignment:
DTGTGTATGBD
HHGTTTTTGHH

Original motif     Consensus sequence: HVCATACACAH Reverse complement motif     Consensus sequence: DTGTGTATGBD

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0251184

Alignment:
DHATKTTTAHH
HHGTTTTTGHH

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 3
Motif ID: 75
Motif name: FOXF2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0278186

Alignment:
BHADSGTAAACAAD
--HHCAAAAACHH-

Original motif     Consensus sequence: BHADSGTAAACAAD Reverse complement motif     Consensus sequence: DTTGTTTACSBTBB

Dataset #: 3
Motif ID: 67
Motif name: FOXI1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0320335

Alignment:
KBDTRTTTRTTT
-HHGTTTTTGHH

Original motif     Consensus sequence: KBDTRTTTRTTT Reverse complement motif     Consensus sequence: AAAMAAAMADBY

Dataset #: 4 Motif ID: 110 Motif name: cmCCACACCcm

Original motif     Consensus sequence: HVCCACACCBV Reverse complement motif     Consensus sequence: VBGGTGTGGBD

Best Matches for Motif ID 110 (Highest to Lowest)

Dataset #: 4
Motif ID: 111
Motif name: ccCCmCaCCCCcc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.00944953

Alignment:
HBCCCCACCCCBH
HVCCACACCBV--

Original motif     Consensus sequence: HBCCCCACCCCBH Reverse complement motif     Consensus sequence: DBGGGGTGGGGBD

Dataset #: 4
Motif ID: 93
Motif name: cmCARCACTwr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0342522

Alignment:
BHCAGCACTHV
HVCCACACCBV

Original motif     Consensus sequence: BHCAGCACTHV Reverse complement motif     Consensus sequence: VHAGTGCTGHB

Dataset #: 4
Motif ID: 98
Motif name: myyCCCACmTGCmyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0444

Alignment:
HBCCCCACMTGCMHV
HVCCACACCBV----

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Dataset #: 4
Motif ID: 99
Motif name: graGGGGGArr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0501309

Alignment:
DVAGGGGGADD
VBGGTGTGGBD

Original motif     Consensus sequence: DVAGGGGGADD Reverse complement motif     Consensus sequence: HDTCCCCCTVH

Dataset #: 4
Motif ID: 116
Motif name: dyCTGCyTCyc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0510757

Alignment:
BHGAKGCAGHH
VBGGTGTGGBD

Original motif     Consensus sequence: DHCTGCYTCHB Reverse complement motif     Consensus sequence: BHGAKGCAGHH

Dataset #: 4 Motif ID: 111 Motif name: ccCCmCaCCCCcc

Original motif     Consensus sequence: HBCCCCACCCCBH Reverse complement motif     Consensus sequence: DBGGGGTGGGGBD

Best Matches for Motif ID 111 (Highest to Lowest)

Dataset #: 4
Motif ID: 98
Motif name: myyCCCACmTGCmyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0348277

Alignment:
HBCCCCACMTGCMHV
--HBCCCCACCCCBH

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Dataset #: 2
Motif ID: 59
Motif name: Motif 59
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0360633

Alignment:
CTBCCTCHSYCYCC
-HBCCCCACCCCBH

Original motif     Consensus sequence: CTBCCTCHSYCYCC Reverse complement motif     Consensus sequence: GGMGKSHGAGGBAG

Dataset #: 4
Motif ID: 103
Motif name: csCCaGCTCCCgs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0413801

Alignment:
BBCCAGCTCCCVB
HBCCCCACCCCBH

Original motif     Consensus sequence: BBCCAGCTCCCVB Reverse complement motif     Consensus sequence: BVGGGAGCTGGBB

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0432691

Alignment:
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC
---------------HBCCCCACCCCBH--

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 4
Motif ID: 122
Motif name: hsCCAGGCCTGGsr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0554645

Alignment:
HBCCAGGCCTGGVD
HBCCCCACCCCBH-

Original motif     Consensus sequence: HVCCAGGCCTGGBD Reverse complement motif     Consensus sequence: HBCCAGGCCTGGVD

Dataset #: 4 Motif ID: 112 Motif name: ctGAGTkTGAgg

Original motif     Consensus sequence: VBGAGTKTGADD Reverse complement motif     Consensus sequence: HHTCARACTCVV

Best Matches for Motif ID 112 (Highest to Lowest)

Dataset #: 4
Motif ID: 121
Motif name: ctGAGTCATCkb
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.00842365

Alignment:
BHGATGACTCDD
HHTCARACTCVV

Original motif     Consensus sequence: HDGAGTCATCDB Reverse complement motif     Consensus sequence: BHGATGACTCDD

Dataset #: 4
Motif ID: 111
Motif name: ccCCmCaCCCCcc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0219353

Alignment:
DBGGGGTGGGGBD
VBGAGTKTGADD-

Original motif     Consensus sequence: HBCCCCACCCCBH Reverse complement motif     Consensus sequence: DBGGGGTGGGGBD

Dataset #: 4
Motif ID: 98
Motif name: myyCCCACmTGCmyr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0363368

Alignment:
HBCCCCACMTGCMHV
-HHTCARACTCVV--

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 16
Number of overlap: 12
Similarity score: 0.0370187

Alignment:
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC
---HHTCARACTCVV---------------

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0389051

Alignment:
BBCCAGCTCMBD
HHTCARACTCVV

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 4 Motif ID: 113 Motif name: htCTGyKTCbt

Original motif     Consensus sequence: HBCTGYTTCBH Reverse complement motif     Consensus sequence: HVGAAMCAGVH

Best Matches for Motif ID 113 (Highest to Lowest)

Dataset #: 4
Motif ID: 116
Motif name: dyCTGCyTCyc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0

Alignment:
DHCTGCYTCHB
HBCTGYTTCBH

Original motif     Consensus sequence: DHCTGCYTCHB Reverse complement motif     Consensus sequence: BHGAKGCAGHH

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0453878

Alignment:
DHATKTTTAHH
HBCTGYTTCBH

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 4
Motif ID: 114
Motif name: awAACAcAAwa
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0496817

Alignment:
BDTTGTGTTDD
HBCTGYTTCBH

Original motif     Consensus sequence: DDAACACAADV Reverse complement motif     Consensus sequence: BDTTGTGTTDD

Dataset #: 4
Motif ID: 121
Motif name: ctGAGTCATCkb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0512287

Alignment:
HDGAGTCATCDB
HVGAAMCAGVH-

Original motif     Consensus sequence: HDGAGTCATCDB Reverse complement motif     Consensus sequence: BHGATGACTCDD

Dataset #: 3
Motif ID: 67
Motif name: FOXI1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0525328

Alignment:
AAAMAAAMADBY
-HVGAAMCAGVH

Original motif     Consensus sequence: KBDTRTTTRTTT Reverse complement motif     Consensus sequence: AAAMAAAMADBY

Dataset #: 4 Motif ID: 114 Motif name: awAACAcAAwa

Original motif     Consensus sequence: DDAACACAADV Reverse complement motif     Consensus sequence: BDTTGTGTTDD

Best Matches for Motif ID 114 (Highest to Lowest)

Dataset #: 2
Motif ID: 60
Motif name: Motif 60
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0409581

Alignment:
AADAAAAMAAAAAM
-DDAACACAADV--

Original motif     Consensus sequence: AADAAAAMAAAAAM Reverse complement motif     Consensus sequence: YTTTTTRTTTTDTT

Dataset #: 3
Motif ID: 71
Motif name: Evi1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0441291

Alignment:
TBTTATCTTMTCTT
BDTTGTGTTDD---

Original motif     Consensus sequence: AAGAYAAGATAABA Reverse complement motif     Consensus sequence: TBTTATCTTMTCTT

Dataset #: 3
Motif ID: 67
Motif name: FOXI1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0515608

Alignment:
KBDTRTTTRTTT
-BDTTGTGTTDD

Original motif     Consensus sequence: KBDTRTTTRTTT Reverse complement motif     Consensus sequence: AAAMAAAMADBY

Dataset #: 3
Motif ID: 76
Motif name: Sox2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0542339

Alignment:
CCWTTGTYATGCAAA
---BDTTGTGTTDD-

Original motif     Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif     Consensus sequence: TTTGCATMACAAWGG

Dataset #: 4
Motif ID: 117
Motif name: yaCATAYACay
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0554944

Alignment:
DTGTGTATGBD
BDTTGTGTTDD

Original motif     Consensus sequence: HVCATACACAH Reverse complement motif     Consensus sequence: DTGTGTATGBD

Dataset #: 4 Motif ID: 115 Motif name: ysCmAGCACwy

Original motif     Consensus sequence: HVCMAGCACHH Reverse complement motif     Consensus sequence: DHGTGCTRGVH

Best Matches for Motif ID 115 (Highest to Lowest)

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.00720731

Alignment:
BBCCAGCTCMBD
HVCMAGCACHH-

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 4
Motif ID: 117
Motif name: yaCATAYACay
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0367273

Alignment:
HVCATACACAH
HVCMAGCACHH

Original motif     Consensus sequence: HVCATACACAH Reverse complement motif     Consensus sequence: DTGTGTATGBD

Dataset #: 4
Motif ID: 103
Motif name: csCCaGCTCCCgs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0374067

Alignment:
BBCCAGCTCCCVB
HVCMAGCACHH--

Original motif     Consensus sequence: BBCCAGCTCCCVB Reverse complement motif     Consensus sequence: BVGGGAGCTGGBB

Dataset #: 4
Motif ID: 123
Motif name: asMAAGCTTKst
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0385747

Alignment:
HBCAAGCTTGVD
HVCMAGCACHH-

Original motif     Consensus sequence: HBCAAGCTTGVD Reverse complement motif     Consensus sequence: DVCAAGCTTGBH

Dataset #: 4
Motif ID: 102
Motif name: ssCkGGYCCCsg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0395809

Alignment:
VVGGGGCCRGBB
-DHGTGCTRGVH

Original motif     Consensus sequence: BBCKGGCCCCVV Reverse complement motif     Consensus sequence: VVGGGGCCRGBB

Dataset #: 4 Motif ID: 116 Motif name: dyCTGCyTCyc

Original motif     Consensus sequence: DHCTGCYTCHB Reverse complement motif     Consensus sequence: BHGAKGCAGHH

Best Matches for Motif ID 116 (Highest to Lowest)

Dataset #: 4
Motif ID: 113
Motif name: htCTGyKTCbt
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0

Alignment:
HBCTGYTTCBH
DHCTGCYTCHB

Original motif     Consensus sequence: HBCTGYTTCBH Reverse complement motif     Consensus sequence: HVGAAMCAGVH

Dataset #: 4
Motif ID: 121
Motif name: ctGAGTCATCkb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0409177

Alignment:
HDGAGTCATCDB
BHGAKGCAGHH-

Original motif     Consensus sequence: HDGAGTCATCDB Reverse complement motif     Consensus sequence: BHGATGACTCDD

Dataset #: 4
Motif ID: 110
Motif name: cmCCACACCcm
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0482758

Alignment:
VBGGTGTGGBD
BHGAKGCAGHH

Original motif     Consensus sequence: HVCCACACCBV Reverse complement motif     Consensus sequence: VBGGTGTGGBD

Dataset #: 4
Motif ID: 102
Motif name: ssCkGGYCCCsg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0492303

Alignment:
BBCKGGCCCCVV
DHCTGCYTCHB-

Original motif     Consensus sequence: BBCKGGCCCCVV Reverse complement motif     Consensus sequence: VVGGGGCCRGBB

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0496606

Alignment:
BBCCAGCTCMBD
-DHCTGCYTCHB

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 4 Motif ID: 117 Motif name: yaCATAYACay

Original motif     Consensus sequence: HVCATACACAH Reverse complement motif     Consensus sequence: DTGTGTATGBD

Best Matches for Motif ID 117 (Highest to Lowest)

Dataset #: 4
Motif ID: 109
Motif name: aaCAAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0144352

Alignment:
HHGTTTTTGHH
DTGTGTATGBD

Original motif     Consensus sequence: HHCAAAAACHH Reverse complement motif     Consensus sequence: HHGTTTTTGHH

Dataset #: 3
Motif ID: 75
Motif name: FOXF2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0390604

Alignment:
DTTGTTTACSBTBB
-DTGTGTATGBD--

Original motif     Consensus sequence: BHADSGTAAACAAD Reverse complement motif     Consensus sequence: DTTGTTTACSBTBB

Dataset #: 4
Motif ID: 112
Motif name: ctGAGTkTGAgg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0405823

Alignment:
VBGAGTKTGADD
-DTGTGTATGBD

Original motif     Consensus sequence: VBGAGTKTGADD Reverse complement motif     Consensus sequence: HHTCARACTCVV

Dataset #: 4
Motif ID: 115
Motif name: ysCmAGCACwy
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0423793

Alignment:
HVCMAGCACHH
HVCATACACAH

Original motif     Consensus sequence: HVCMAGCACHH Reverse complement motif     Consensus sequence: DHGTGCTRGVH

Dataset #: 2
Motif ID: 58
Motif name: Motif 58
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0462842

Alignment:
CACACACACACACA
HVCATACACAH---

Original motif     Consensus sequence: CACACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTGTG

Dataset #: 4 Motif ID: 118 Motif name: yrCACATGCATGTGyr

Original motif     Consensus sequence: HVCACATGCATGTGBD Reverse complement motif     Consensus sequence: DVCACATGCATGTGBH

Best Matches for Motif ID 118 (Highest to Lowest)

Dataset #: 4
Motif ID: 98
Motif name: myyCCCACmTGCmyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0676289

Alignment:
-HBCCCCACMTGCMHV
HVCACATGCATGTGBD

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Dataset #: 2
Motif ID: 58
Motif name: Motif 58
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.573876

Alignment:
--CACACACACACACA
HVCACATGCATGTGBD

Original motif     Consensus sequence: CACACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTGTG

Dataset #: 3
Motif ID: 80
Motif name: Pou5f1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 1.06805

Alignment:
ATTTGCATHACAAWG---
--HVCACATGCATGTGBD

Original motif     Consensus sequence: CWTTGTHATGCAAAT Reverse complement motif     Consensus sequence: ATTTGCATHACAAWG

Dataset #: 3
Motif ID: 76
Motif name: Sox2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 1.07558

Alignment:
CCWTTGTYATGCAAA---
--DVCACATGCATGTGBH

Original motif     Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif     Consensus sequence: TTTGCATMACAAWGG

Dataset #: 4
Motif ID: 126
Motif name: yvTGCAGsCAcg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 1.55231

Alignment:
BVTGCAGSCABV----
HVCACATGCATGTGBD

Original motif     Consensus sequence: BVTGCAGSCABV Reverse complement motif     Consensus sequence: VBTGSCTGCAVB

Dataset #: 4 Motif ID: 119 Motif name: cbCCAGCTCmyk

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Best Matches for Motif ID 119 (Highest to Lowest)

Dataset #: 4
Motif ID: 103
Motif name: csCCaGCTCCCgs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.00141375

Alignment:
BBCCAGCTCCCVB
BBCCAGCTCMBD-

Original motif     Consensus sequence: BBCCAGCTCCCVB Reverse complement motif     Consensus sequence: BVGGGAGCTGGBB

Dataset #: 4
Motif ID: 123
Motif name: asMAAGCTTKst
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0040263

Alignment:
DVCAAGCTTGBH
HBYGAGCTGGBB

Original motif     Consensus sequence: HBCAAGCTTGVD Reverse complement motif     Consensus sequence: DVCAAGCTTGBH

Dataset #: 4
Motif ID: 122
Motif name: hsCCAGGCCTGGsr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0363393

Alignment:
HVCCAGGCCTGGBD
BBCCAGCTCMBD--

Original motif     Consensus sequence: HVCCAGGCCTGGBD Reverse complement motif     Consensus sequence: HBCCAGGCCTGGVD

Dataset #: 4
Motif ID: 102
Motif name: ssCkGGYCCCsg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0378472

Alignment:
BBCKGGCCCCVV
BBCCAGCTCMBD

Original motif     Consensus sequence: BBCKGGCCCCVV Reverse complement motif     Consensus sequence: VVGGGGCCRGBB

Dataset #: 4
Motif ID: 111
Motif name: ccCCmCaCCCCcc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0419313

Alignment:
HBCCCCACCCCBH
-BBCCAGCTCMBD

Original motif     Consensus sequence: HBCCCCACCCCBH Reverse complement motif     Consensus sequence: DBGGGGTGGGGBD

Dataset #: 4 Motif ID: 120 Motif name: wtTTTwAAAaw

Original motif     Consensus sequence: HHTTTWAAADD Reverse complement motif     Consensus sequence: DDTTTWAAAHH

Best Matches for Motif ID 120 (Highest to Lowest)

Dataset #: 4
Motif ID: 108
Motif name: wwATkTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0769117

Alignment:
DHATKTTTAHH
DDTTTWAAAHH

Original motif     Consensus sequence: DHATKTTTAHH Reverse complement motif     Consensus sequence: HHTAAARATHD

Dataset #: 3
Motif ID: 75
Motif name: FOXF2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0772648

Alignment:
DTTGTTTACSBTBB
DDTTTWAAAHH---

Original motif     Consensus sequence: BHADSGTAAACAAD Reverse complement motif     Consensus sequence: DTTGTTTACSBTBB

Dataset #: 3
Motif ID: 66
Motif name: Lhx3
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0876632

Alignment:
BMWTAATTAATTW
--DDTTTWAAAHH

Original motif     Consensus sequence: WAATTAATTAWYB Reverse complement motif     Consensus sequence: BMWTAATTAATTW

Dataset #: 3
Motif ID: 62
Motif name: TBP
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0881502

Alignment:
STATAAAWRVVVVBV
HHTTTWAAADD----

Original motif     Consensus sequence: STATAAAWRVVVVBV Reverse complement motif     Consensus sequence: VBVVVVMWTTTATAS

Dataset #: 4
Motif ID: 114
Motif name: awAACAcAAwa
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.090069

Alignment:
BDTTGTGTTDD
HHTTTWAAADD

Original motif     Consensus sequence: DDAACACAADV Reverse complement motif     Consensus sequence: BDTTGTGTTDD

Dataset #: 4 Motif ID: 121 Motif name: ctGAGTCATCkb

Original motif     Consensus sequence: HDGAGTCATCDB Reverse complement motif     Consensus sequence: BHGATGACTCDD

Best Matches for Motif ID 121 (Highest to Lowest)

Dataset #: 4
Motif ID: 112
Motif name: ctGAGTkTGAgg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0322402

Alignment:
HHTCARACTCVV
BHGATGACTCDD

Original motif     Consensus sequence: VBGAGTKTGADD Reverse complement motif     Consensus sequence: HHTCARACTCVV

Dataset #: 4
Motif ID: 122
Motif name: hsCCAGGCCTGGsr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0510995

Alignment:
HBCCAGGCCTGGVD
-HDGAGTCATCDB-

Original motif     Consensus sequence: HVCCAGGCCTGGBD Reverse complement motif     Consensus sequence: HBCCAGGCCTGGVD

Dataset #: 4
Motif ID: 102
Motif name: ssCkGGYCCCsg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0569923

Alignment:
BBCKGGCCCCVV
BHGATGACTCDD

Original motif     Consensus sequence: BBCKGGCCCCVV Reverse complement motif     Consensus sequence: VVGGGGCCRGBB

Dataset #: 4
Motif ID: 123
Motif name: asMAAGCTTKst
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0601978

Alignment:
DVCAAGCTTGBH
HDGAGTCATCDB

Original motif     Consensus sequence: HBCAAGCTTGVD Reverse complement motif     Consensus sequence: DVCAAGCTTGBH

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 11
Number of overlap: 12
Similarity score: 0.0641337

Alignment:
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC
----------BHGATGACTCDD--------

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 4 Motif ID: 122 Motif name: hsCCAGGCCTGGsr

Original motif     Consensus sequence: HVCCAGGCCTGGBD Reverse complement motif     Consensus sequence: HBCCAGGCCTGGVD

Best Matches for Motif ID 122 (Highest to Lowest)

Dataset #: 4
Motif ID: 98
Motif name: myyCCCACmTGCmyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0170832

Alignment:
HBCCCCACMTGCMHV
HVCCAGGCCTGGBD-

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Dataset #: 4
Motif ID: 118
Motif name: yrCACATGCATGTGyr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0217283

Alignment:
DVCACATGCATGTGBH
-HBCCAGGCCTGGVD-

Original motif     Consensus sequence: HVCACATGCATGTGBD Reverse complement motif     Consensus sequence: DVCACATGCATGTGBH

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 14
Similarity score: 0.0375854

Alignment:
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC
--------HBCCAGGCCTGGVD--------

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 4
Motif ID: 103
Motif name: csCCaGCTCCCgs
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.516252

Alignment:
-BBCCAGCTCCCVB
HBCCAGGCCTGGVD

Original motif     Consensus sequence: BBCCAGCTCCCVB Reverse complement motif     Consensus sequence: BVGGGAGCTGGBB

Dataset #: 4
Motif ID: 111
Motif name: ccCCmCaCCCCcc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.531063

Alignment:
DBGGGGTGGGGBD-
HVCCAGGCCTGGBD

Original motif     Consensus sequence: HBCCCCACCCCBH Reverse complement motif     Consensus sequence: DBGGGGTGGGGBD

Dataset #: 4 Motif ID: 123 Motif name: asMAAGCTTKst

Original motif     Consensus sequence: HBCAAGCTTGVD Reverse complement motif     Consensus sequence: DVCAAGCTTGBH

Best Matches for Motif ID 123 (Highest to Lowest)

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0

Alignment:
HBYGAGCTGGBB
DVCAAGCTTGBH

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 4
Motif ID: 122
Motif name: hsCCAGGCCTGGsr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.025923

Alignment:
HBCCAGGCCTGGVD
-DVCAAGCTTGBH-

Original motif     Consensus sequence: HVCCAGGCCTGGBD Reverse complement motif     Consensus sequence: HBCCAGGCCTGGVD

Dataset #: 4
Motif ID: 103
Motif name: csCCaGCTCCCgs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0387894

Alignment:
BBCCAGCTCCCVB
HBCAAGCTTGVD-

Original motif     Consensus sequence: BBCCAGCTCCCVB Reverse complement motif     Consensus sequence: BVGGGAGCTGGBB

Dataset #: 3
Motif ID: 71
Motif name: Evi1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0417163

Alignment:
TBTTATCTTMTCTT
--HBCAAGCTTGVD

Original motif     Consensus sequence: AAGAYAAGATAABA Reverse complement motif     Consensus sequence: TBTTATCTTMTCTT

Dataset #: 4
Motif ID: 121
Motif name: ctGAGTCATCkb
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0518025

Alignment:
BHGATGACTCDD
HBCAAGCTTGVD

Original motif     Consensus sequence: HDGAGTCATCDB Reverse complement motif     Consensus sequence: BHGATGACTCDD

Dataset #: 4 Motif ID: 124 Motif name: cswGGGCCCwsg

Original motif     Consensus sequence: VVWGGGCCCWBB Reverse complement motif     Consensus sequence: BBWGGGCCCWVV

Best Matches for Motif ID 124 (Highest to Lowest)

Dataset #: 4
Motif ID: 102
Motif name: ssCkGGYCCCsg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0170635

Alignment:
BBCKGGCCCCVV
VVWGGGCCCWBB

Original motif     Consensus sequence: BBCKGGCCCCVV Reverse complement motif     Consensus sequence: VVGGGGCCRGBB

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0400014

Alignment:
HBYGAGCTGGBB
VVWGGGCCCWBB

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Dataset #: 4
Motif ID: 126
Motif name: yvTGCAGsCAcg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0429334

Alignment:
BVTGCAGSCABV
VVWGGGCCCWBB

Original motif     Consensus sequence: BVTGCAGSCABV Reverse complement motif     Consensus sequence: VBTGSCTGCAVB

Dataset #: 4
Motif ID: 122
Motif name: hsCCAGGCCTGGsr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0467887

Alignment:
HVCCAGGCCTGGBD
-VVWGGGCCCWBB-

Original motif     Consensus sequence: HVCCAGGCCTGGBD Reverse complement motif     Consensus sequence: HBCCAGGCCTGGVD

Dataset #: 4
Motif ID: 103
Motif name: csCCaGCTCCCgs
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0482771

Alignment:
BBCCAGCTCCCVB
-BBWGGGCCCWVV

Original motif     Consensus sequence: BBCCAGCTCCCVB Reverse complement motif     Consensus sequence: BVGGGAGCTGGBB

Dataset #: 4 Motif ID: 125 Motif name: wwTAATwwATTAww

Original motif     Consensus sequence: DDTAATWWATTAHH Reverse complement motif     Consensus sequence: HHTAATWWATTADD

Best Matches for Motif ID 125 (Highest to Lowest)

Dataset #: 3
Motif ID: 68
Motif name: HNF1A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0447485

Alignment:
GGTTAATDATTAMC
DDTAATWWATTAHH

Original motif     Consensus sequence: GGTTAATDATTAMC Reverse complement motif     Consensus sequence: GYTAATDATTAACC

Dataset #: 3
Motif ID: 81
Motif name: Pax4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0620115

Alignment:
GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM
---------------HHTAATWWATTADD-

Original motif     Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif     Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Dataset #: 3
Motif ID: 75
Motif name: FOXF2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0703085

Alignment:
BHADSGTAAACAAD
HHTAATWWATTADD

Original motif     Consensus sequence: BHADSGTAAACAAD Reverse complement motif     Consensus sequence: DTTGTTTACSBTBB

Dataset #: 3
Motif ID: 62
Motif name: TBP
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0724742

Alignment:
STATAAAWRVVVVBV
HHTAATWWATTADD-

Original motif     Consensus sequence: STATAAAWRVVVVBV Reverse complement motif     Consensus sequence: VBVVVVMWTTTATAS

Dataset #: 3
Motif ID: 76
Motif name: Sox2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0728076

Alignment:
TTTGCATMACAAWGG
-DDTAATWWATTAHH

Original motif     Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif     Consensus sequence: TTTGCATMACAAWGG

Dataset #: 4 Motif ID: 126 Motif name: yvTGCAGsCAcg

Original motif     Consensus sequence: BVTGCAGSCABV Reverse complement motif     Consensus sequence: VBTGSCTGCAVB

Best Matches for Motif ID 126 (Highest to Lowest)

Dataset #: 4
Motif ID: 104
Motif name: cgCCCwGGScsg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0284753

Alignment:
VDCCCWGGGCBB
BVTGCAGSCABV

Original motif     Consensus sequence: VDCCCWGGGCBB Reverse complement motif     Consensus sequence: BBGCCCWGGGHV

Dataset #: 4
Motif ID: 118
Motif name: yrCACATGCATGTGyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0340354

Alignment:
HVCACATGCATGTGBD
BVTGCAGSCABV----

Original motif     Consensus sequence: HVCACATGCATGTGBD Reverse complement motif     Consensus sequence: DVCACATGCATGTGBH

Dataset #: 4
Motif ID: 98
Motif name: myyCCCACmTGCmyr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0351986

Alignment:
VDRGCAYGTGGGGVD
---BVTGCAGSCABV

Original motif     Consensus sequence: HBCCCCACMTGCMHV Reverse complement motif     Consensus sequence: VDRGCAYGTGGGGVD

Dataset #: 4
Motif ID: 124
Motif name: cswGGGCCCwsg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0357442

Alignment:
VVWGGGCCCWBB
BVTGCAGSCABV

Original motif     Consensus sequence: VVWGGGCCCWBB Reverse complement motif     Consensus sequence: BBWGGGCCCWVV

Dataset #: 4
Motif ID: 103
Motif name: csCCaGCTCCCgs
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0445722

Alignment:
BBCCAGCTCCCVB
VBTGSCTGCAVB-

Original motif     Consensus sequence: BBCCAGCTCCCVB Reverse complement motif     Consensus sequence: BVGGGAGCTGGBB

Dataset #: 4 Motif ID: 127 Motif name: rryCAGGGAyw

Original motif     Consensus sequence: DDYCAGGGAHD Reverse complement motif     Consensus sequence: DHTCCCTGMDD

Best Matches for Motif ID 127 (Highest to Lowest)

Dataset #: 4
Motif ID: 99
Motif name: graGGGGGArr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0283253

Alignment:
DVAGGGGGADD
DDYCAGGGAHD

Original motif     Consensus sequence: DVAGGGGGADD Reverse complement motif     Consensus sequence: HDTCCCCCTVH

Dataset #: 4
Motif ID: 126
Motif name: yvTGCAGsCAcg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0326364

Alignment:
VBTGSCTGCAVB
DHTCCCTGMDD-

Original motif     Consensus sequence: BVTGCAGSCABV Reverse complement motif     Consensus sequence: VBTGSCTGCAVB

Dataset #: 4
Motif ID: 104
Motif name: cgCCCwGGScsg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0424475

Alignment:
VDCCCWGGGCBB
-DDYCAGGGAHD

Original motif     Consensus sequence: VDCCCWGGGCBB Reverse complement motif     Consensus sequence: BBGCCCWGGGHV

Dataset #: 4
Motif ID: 122
Motif name: hsCCAGGCCTGGsr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0451737

Alignment:
HVCCAGGCCTGGBD
DDYCAGGGAHD---

Original motif     Consensus sequence: HVCCAGGCCTGGBD Reverse complement motif     Consensus sequence: HBCCAGGCCTGGVD

Dataset #: 4
Motif ID: 119
Motif name: cbCCAGCTCmyk
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0514394

Alignment:
BBCCAGCTCMBD
DDYCAGGGAHD-

Original motif     Consensus sequence: BBCCAGCTCMBD Reverse complement motif     Consensus sequence: HBYGAGCTGGBB

Results created by MOTIFSIM on 11-19-2016 22:23:05
Runtime: 867.303 seconds

MOTIFSIM is written by Ngoc Tam L. Tran
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