**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.1 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 4 Number of top significant motifs: 10 Number of best matches: 5 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Phylogenetic tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # DREME_DM01.txt 51 1 MEME-CHIP_DM01.txt 9 2 PScanChIP_DM01.txt 27 3 RSAT_peak-motifs_DM01.txt 40 4 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ****************************************************************** Top 10 Significant Motifs - Global Matching (Highest to Lowest) ****************************************************************** Dataset #: 3 Motif ID: 69 Motif name: NKX3-1 Original motif 0.650000 0.050000 0.150000 0.150000 0.000000 0.050000 0.000000 0.950000 1.000000 0.000000 0.000000 0.000000 0.000000 0.950000 0.000000 0.050000 0.050000 0.000000 0.000000 0.950000 0.050000 0.000000 0.000000 0.950000 0.950000 0.000000 0.050000 0.000000 Consensus sequence: ATACTTA Reverse complement motif 0.000000 0.000000 0.050000 0.950000 0.950000 0.000000 0.000000 0.050000 0.950000 0.000000 0.000000 0.050000 0.000000 0.000000 0.950000 0.050000 0.000000 0.000000 0.000000 1.000000 0.950000 0.050000 0.000000 0.000000 0.150000 0.050000 0.150000 0.650000 Consensus sequence: TAAGTAT *************************************************************** Best Matches for Top Significant Motif ID 69 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 90 ymTACATAyw Reverse Complement Reverse Complement Backward 2 7 0.000000 Original motif 0.226891 0.257448 0.187166 0.328495 0.349885 0.254393 0.161956 0.233766 0.000000 0.000000 0.000000 1.000000 0.998472 0.000764 0.000764 0.000000 0.000000 0.992361 0.000000 0.007639 0.989305 0.000000 0.010695 0.000000 0.000000 0.001528 0.000000 0.998472 1.000000 0.000000 0.000000 0.000000 0.223835 0.272727 0.247517 0.255921 0.395722 0.160428 0.174179 0.269672 Consensus sequence: HHTACATABD Reverse complement motif 0.269672 0.160428 0.174179 0.395722 0.223835 0.247517 0.272727 0.255921 0.000000 0.000000 0.000000 1.000000 0.998472 0.001528 0.000000 0.000000 0.000000 0.000000 0.010695 0.989305 0.000000 0.000000 0.992361 0.007639 0.000000 0.000764 0.000764 0.998472 1.000000 0.000000 0.000000 0.000000 0.233766 0.254393 0.161956 0.349885 0.328495 0.257448 0.187166 0.226891 Consensus sequence: DBTATGTAHH Alignment: DBTATGTAHH --TAAGTAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 Motif 10 Reverse Complement Reverse Complement Backward 1 7 0.002748 Original motif 0.300937 0.370023 0.000000 0.329040 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: HTACATA Reverse complement motif 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.300937 0.000000 0.370023 0.329040 Consensus sequence: TATGTAD Alignment: TATGTAD TAAGTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 34 Motif 34 Original Motif Original Motif Backward 1 7 0.008835 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.241379 0.758621 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: ATATTTA Reverse complement motif 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.758621 0.000000 0.241379 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TAAATAT Alignment: ATATTTA ATACTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 106 wtAATTAAtw Reverse Complement Reverse Complement Forward 4 7 0.010068 Original motif 0.352410 0.093373 0.210843 0.343373 0.234940 0.045181 0.090361 0.629518 0.996988 0.000000 0.000000 0.003012 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.003012 0.996988 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.228916 0.123494 0.084337 0.563253 0.436747 0.159639 0.102410 0.301205 Consensus sequence: DTAATTAATH Reverse complement motif 0.301205 0.159639 0.102410 0.436747 0.563253 0.123494 0.084337 0.228916 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.996988 0.000000 0.003012 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.003012 0.000000 0.000000 0.996988 0.629518 0.045181 0.090361 0.234940 0.343373 0.093373 0.210843 0.352410 Consensus sequence: HATTAATTAD Alignment: HATTAATTAD ---TAAGTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 100 wwTAATAAww Reverse Complement Reverse Complement Backward 2 7 0.031642 Original motif 0.379278 0.168363 0.185939 0.266420 0.370028 0.172988 0.164662 0.292322 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.999075 0.000000 0.000000 0.000925 0.000000 0.000925 0.000000 0.999075 1.000000 0.000000 0.000000 0.000000 0.999075 0.000000 0.000000 0.000925 0.389454 0.166512 0.170213 0.273821 0.404255 0.154487 0.166512 0.274746 Consensus sequence: DHTAATAADD Reverse complement motif 0.274746 0.154487 0.166512 0.404255 0.273821 0.166512 0.170213 0.389454 0.000925 0.000000 0.000000 0.999075 0.000000 0.000000 0.000000 1.000000 0.999075 0.000925 0.000000 0.000000 0.000925 0.000000 0.000000 0.999075 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.292322 0.172988 0.164662 0.370028 0.266420 0.168363 0.185939 0.379278 Consensus sequence: DDTTATTAHD Alignment: DDTTATTAHD --TAAGTAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 53 Motif name: Motif 53 Original motif 0.000000 0.000000 0.000000 1.000000 0.223169 0.335605 0.441227 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.356048 0.000000 0.643952 0.000000 Consensus sequence: TSTGTR Reverse complement motif 0.356048 0.643952 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.223169 0.441227 0.335605 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: MACASA *************************************************************** Best Matches for Top Significant Motif ID 53 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Reverse Complement Original Motif Backward 1 6 0.002283 Original motif 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.427394 0.572606 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.445932 0.554068 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: CACASASA Reverse complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.554068 0.445932 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.572606 0.427394 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: TSTSTGTG Alignment: CACASASA --MACASA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 114 awAACAcAAwa Reverse Complement Original Motif Backward 4 6 0.012263 Original motif 0.333333 0.185039 0.237533 0.244094 0.371391 0.143045 0.175853 0.309711 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.992126 0.000000 0.007874 0.000000 0.237533 0.606299 0.156168 0.000000 0.998688 0.000000 0.001312 0.000000 0.997375 0.002625 0.000000 0.000000 0.341207 0.170604 0.204724 0.283465 0.377953 0.207349 0.212598 0.202100 Consensus sequence: DDAACACAADV Reverse complement motif 0.202100 0.207349 0.212598 0.377953 0.283465 0.170604 0.204724 0.341207 0.000000 0.002625 0.000000 0.997375 0.000000 0.000000 0.001312 0.998688 0.237533 0.156168 0.606299 0.000000 0.000000 0.000000 0.007874 0.992126 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.309711 0.143045 0.175853 0.371391 0.244094 0.185039 0.237533 0.333333 Consensus sequence: BDTTGTGTTDD Alignment: DDAACACAADV --MACASA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 23 Motif 23 Original Motif Original Motif Forward 2 6 0.013702 Original motif 0.394826 0.605174 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.524166 0.475834 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: MTSTGTA Reverse complement motif 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.475834 0.524166 0.000000 1.000000 0.000000 0.000000 0.000000 0.394826 0.000000 0.605174 0.000000 Consensus sequence: TACASAR Alignment: MTSTGTA -TSTGTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Original Motif Reverse Complement Forward 2 6 0.025233 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.110218 0.770953 0.000000 0.118829 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: ACACACAC Reverse complement motif 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.110218 0.000000 0.770953 0.118829 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: GTGTGTGT Alignment: GTGTGTGT -TSTGTR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 12 Motif 12 Original Motif Reverse Complement Forward 2 6 0.026227 Original motif 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.747100 0.000000 0.252900 0.000000 0.000000 0.477958 0.000000 0.522042 Consensus sequence: GCACACAY Reverse complement motif 0.522042 0.477958 0.000000 0.000000 0.000000 0.000000 0.252900 0.747100 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: MTGTGTGC Alignment: MTGTGTGC -TSTGTR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 25 Motif name: Motif 25 Original motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.519243 0.000000 0.000000 0.480757 0.380269 0.000000 0.000000 0.619731 Consensus sequence: TTTAWW Reverse complement motif 0.619731 0.000000 0.000000 0.380269 0.480757 0.000000 0.000000 0.519243 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: WWTAAA *************************************************************** Best Matches for Top Significant Motif ID 25 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 91 wtATTTTAww Reverse Complement Reverse Complement Forward 1 6 0.011642 Original motif 0.282116 0.141898 0.197313 0.378673 0.215785 0.200672 0.121746 0.461797 0.999160 0.000000 0.000840 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000840 0.000840 0.000840 0.997481 0.000000 0.028547 0.000000 0.971453 1.000000 0.000000 0.000000 0.000000 0.304786 0.156171 0.092359 0.446683 0.272880 0.198153 0.163728 0.365239 Consensus sequence: DHATTTTAWH Reverse complement motif 0.365239 0.198153 0.163728 0.272880 0.446683 0.156171 0.092359 0.304786 0.000000 0.000000 0.000000 1.000000 0.971453 0.028547 0.000000 0.000000 0.997481 0.000840 0.000840 0.000840 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000840 0.999160 0.461797 0.200672 0.121746 0.215785 0.378673 0.141898 0.197313 0.282116 Consensus sequence: HWTAAAATHD Alignment: HWTAAAATHD WWTAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Original Motif Original Motif Backward 1 6 0.011825 Original motif 0.286469 0.149049 0.174419 0.390063 0.265328 0.236786 0.158562 0.339323 0.998943 0.000000 0.001057 0.000000 0.001057 0.000000 0.000000 0.998943 0.003171 0.001057 0.335095 0.660677 0.005285 0.000000 0.001057 0.993658 0.003171 0.001057 0.000000 0.995772 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.355180 0.213531 0.125793 0.305497 0.373150 0.153277 0.142706 0.330867 Consensus sequence: DHATKTTTAHH Reverse complement motif 0.330867 0.153277 0.142706 0.373150 0.305497 0.213531 0.125793 0.355180 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.995772 0.001057 0.000000 0.003171 0.993658 0.000000 0.001057 0.005285 0.660677 0.001057 0.335095 0.003171 0.998943 0.000000 0.000000 0.001057 0.000000 0.000000 0.001057 0.998943 0.339323 0.236786 0.158562 0.265328 0.390063 0.149049 0.174419 0.286469 Consensus sequence: HHTAAARATHD Alignment: DHATKTTTAHH -----TTTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 70 Foxq1 Original Motif Original Motif Backward 1 6 0.015808 Original motif 0.222222 0.222222 0.166667 0.388889 0.722222 0.055556 0.166667 0.055556 0.277778 0.111111 0.000000 0.611111 0.166667 0.000000 0.000000 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.944444 0.000000 0.055556 0.000000 0.000000 0.055556 0.222222 0.722222 0.333333 0.000000 0.166667 0.500000 Consensus sequence: HATTGTTTATW Reverse complement motif 0.500000 0.000000 0.166667 0.333333 0.722222 0.055556 0.222222 0.000000 0.000000 0.000000 0.055556 0.944444 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.000000 0.166667 0.611111 0.111111 0.000000 0.277778 0.055556 0.055556 0.166667 0.722222 0.388889 0.222222 0.166667 0.222222 Consensus sequence: WATAAACAATH Alignment: HATTGTTTATW -----TTTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 55 Motif 55 Original Motif Reverse Complement Backward 1 6 0.030767 Original motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: TTTAAAA Reverse complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: TTTTAAA Alignment: TTTTAAA -TTTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Original Motif Original Motif Forward 6 6 0.034775 Original motif 0.193548 0.032258 0.451613 0.322581 0.129032 0.258065 0.387097 0.225806 0.354839 0.129032 0.258065 0.258065 0.000000 0.000000 0.000000 1.000000 0.419355 0.000000 0.580645 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.483871 0.000000 0.516129 0.000000 0.000000 0.000000 0.225806 0.774194 0.258065 0.032258 0.129032 0.580645 0.064516 0.032258 0.129032 0.774194 Consensus sequence: KBDTRTTTRTTT Reverse complement motif 0.774194 0.032258 0.129032 0.064516 0.580645 0.032258 0.129032 0.258065 0.774194 0.000000 0.225806 0.000000 0.483871 0.516129 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.419355 0.580645 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.258065 0.129032 0.258065 0.354839 0.129032 0.387097 0.258065 0.225806 0.193548 0.451613 0.032258 0.322581 Consensus sequence: AAAMAAAMADBY Alignment: KBDTRTTTRTTT -----TTTAWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 24 Motif name: Motif 24 Original motif 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.326715 0.372692 0.300592 Consensus sequence: CACGB Reverse complement motif 0.000000 0.372692 0.326715 0.300592 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: BCGTG *************************************************************** Best Matches for Top Significant Motif ID 24 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 56 Motif 56 Reverse Complement Reverse Complement Forward 2 5 0.000000 Original motif 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: CACGGA Reverse complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: TCCGTG Alignment: TCCGTG -BCGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 115 ysCmAGCACwy Reverse Complement Reverse Complement Forward 1 5 0.018640 Original motif 0.204848 0.269742 0.201720 0.323690 0.183737 0.353401 0.288507 0.174355 0.000000 0.995309 0.003127 0.001564 0.417514 0.570758 0.010946 0.000782 0.928851 0.060203 0.007819 0.003127 0.000000 0.010164 0.987490 0.002346 0.000782 0.997654 0.000782 0.000782 0.965598 0.000782 0.030493 0.003127 0.000782 0.998436 0.000000 0.000782 0.262705 0.245504 0.133698 0.358092 0.178264 0.355747 0.176701 0.289289 Consensus sequence: HVCMAGCACHH Reverse complement motif 0.178264 0.176701 0.355747 0.289289 0.358092 0.245504 0.133698 0.262705 0.000782 0.000000 0.998436 0.000782 0.003127 0.000782 0.030493 0.965598 0.000782 0.000782 0.997654 0.000782 0.000000 0.987490 0.010164 0.002346 0.003127 0.060203 0.007819 0.928851 0.417514 0.010946 0.570758 0.000782 0.000000 0.003127 0.995309 0.001564 0.183737 0.288507 0.353401 0.174355 0.323690 0.269742 0.201720 0.204848 Consensus sequence: DHGTGCTRGVH Alignment: DHGTGCTRGVH BCGTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 107 crCGyGCRcg Original Motif Reverse Complement Backward 2 5 0.019278 Original motif 0.141667 0.518750 0.118750 0.220833 0.258333 0.106250 0.550000 0.085417 0.000000 0.997917 0.000000 0.002083 0.204167 0.000000 0.795833 0.000000 0.002083 0.320833 0.000000 0.677083 0.002083 0.000000 0.997917 0.000000 0.000000 0.997917 0.000000 0.002083 0.700000 0.004167 0.295833 0.000000 0.093750 0.600000 0.066667 0.239583 0.225000 0.133333 0.506250 0.135417 Consensus sequence: CGCGTGCACG Reverse complement motif 0.225000 0.506250 0.133333 0.135417 0.093750 0.066667 0.600000 0.239583 0.000000 0.004167 0.295833 0.700000 0.000000 0.000000 0.997917 0.002083 0.002083 0.997917 0.000000 0.000000 0.677083 0.320833 0.000000 0.002083 0.204167 0.795833 0.000000 0.000000 0.000000 0.000000 0.997917 0.002083 0.258333 0.550000 0.106250 0.085417 0.141667 0.118750 0.518750 0.220833 Consensus sequence: CGTGCACGCG Alignment: CGTGCACGCG ----CACGB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 58 Motif 58 Original Motif Original Motif Forward 1 5 0.033966 Original motif 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.933333 0.000000 0.066667 0.000000 0.000000 0.700000 0.066667 0.233333 0.766667 0.233333 0.000000 0.000000 0.066667 0.866666 0.000000 0.066667 0.700000 0.033333 0.066667 0.200000 0.000000 0.833333 0.066667 0.100000 0.900000 0.066667 0.000000 0.033333 0.033333 0.966667 0.000000 0.000000 0.833333 0.000000 0.000000 0.166667 0.000000 0.866667 0.033333 0.100000 0.666666 0.066667 0.266667 0.000000 Consensus sequence: CACACACACACACA Reverse complement motif 0.000000 0.066667 0.266667 0.666666 0.000000 0.033333 0.866667 0.100000 0.166667 0.000000 0.000000 0.833333 0.033333 0.000000 0.966667 0.000000 0.033333 0.066667 0.000000 0.900000 0.000000 0.066667 0.833333 0.100000 0.200000 0.033333 0.066667 0.700000 0.066667 0.000000 0.866666 0.066667 0.000000 0.233333 0.000000 0.766667 0.000000 0.066667 0.700000 0.233333 0.000000 0.000000 0.066667 0.933333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: TGTGTGTGTGTGTG Alignment: CACACACACACACA CACGB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 93 cmCARCACTwr Reverse Complement Reverse Complement Backward 6 5 0.038568 Original motif 0.205379 0.332518 0.237164 0.224939 0.310513 0.261614 0.190709 0.237164 0.002445 0.990220 0.004890 0.002445 0.977995 0.002445 0.019560 0.000000 0.290954 0.000000 0.709046 0.000000 0.000000 0.997555 0.002445 0.000000 0.914425 0.002445 0.009780 0.073350 0.000000 0.997555 0.000000 0.002445 0.000000 0.002445 0.017115 0.980440 0.330073 0.234719 0.154034 0.281174 0.256724 0.217604 0.312958 0.212714 Consensus sequence: BHCAGCACTHV Reverse complement motif 0.256724 0.312958 0.217604 0.212714 0.281174 0.234719 0.154034 0.330073 0.980440 0.002445 0.017115 0.000000 0.000000 0.000000 0.997555 0.002445 0.073350 0.002445 0.009780 0.914425 0.000000 0.002445 0.997555 0.000000 0.290954 0.709046 0.000000 0.000000 0.000000 0.002445 0.019560 0.977995 0.002445 0.004890 0.990220 0.002445 0.237164 0.261614 0.190709 0.310513 0.205379 0.237164 0.332518 0.224939 Consensus sequence: VHAGTGCTGHB Alignment: VHAGTGCTGHB -BCGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 54 Motif name: Motif 54 Original motif 0.585317 0.000000 0.414683 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: RGAAA Reverse complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.414683 0.585317 Consensus sequence: TTTCK *************************************************************** Best Matches for Top Significant Motif ID 54 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 26 Motif 26 Original Motif Original Motif Forward 4 5 0.000000 Original motif 0.625000 0.000000 0.375000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.569444 0.000000 0.430556 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: RGARGAAA Reverse complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.430556 0.569444 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.375000 0.625000 Consensus sequence: TTTCKTCK Alignment: RGARGAAA ---RGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 28 Motif 28 Reverse Complement Reverse Complement Backward 3 5 0.019941 Original motif 1.000000 0.000000 0.000000 0.000000 0.316133 0.359431 0.324437 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: AVAGAAA Reverse complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.316133 0.324437 0.359431 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TTTCTVT Alignment: TTTCTVT TTTCK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 33 Motif 33 Reverse Complement Original Motif Forward 1 5 0.028472 Original motif 0.000000 1.000000 0.000000 0.000000 0.411899 0.504577 0.083524 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: CMTTTCC Reverse complement motif 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.411899 0.083524 0.504577 0.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: GGAAARG Alignment: CMTTTCC TTTCK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 46 Motif 46 Original Motif Original Motif Backward 3 5 0.028472 Original motif 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.402386 0.396963 0.200651 1.000000 0.000000 0.000000 0.000000 Consensus sequence: GGAAASA Reverse complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.396963 0.402386 0.200651 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: TSTTTCC Alignment: GGAAASA RGAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 44 Motif 44 Reverse Complement Reverse Complement Backward 1 5 0.033924 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.720322 0.279678 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: AGAAATG Reverse complement motif 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.720322 0.000000 0.279678 0.000000 0.000000 0.000000 1.000000 Consensus sequence: CATTTCT Alignment: CATTTCT --TTTCK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 64 Motif name: ARID3A Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.037037 0.333333 0.000000 0.629630 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.740741 0.000000 0.037037 0.222222 Consensus sequence: ATYAAA Reverse complement motif 0.222222 0.000000 0.037037 0.740741 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.629630 0.333333 0.000000 0.037037 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TTTMAT *************************************************************** Best Matches for Top Significant Motif ID 64 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 106 wtAATTAAtw Original Motif Original Motif Forward 4 6 0.011491 Original motif 0.352410 0.093373 0.210843 0.343373 0.234940 0.045181 0.090361 0.629518 0.996988 0.000000 0.000000 0.003012 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.003012 0.996988 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.228916 0.123494 0.084337 0.563253 0.436747 0.159639 0.102410 0.301205 Consensus sequence: DTAATTAATH Reverse complement motif 0.301205 0.159639 0.102410 0.436747 0.563253 0.123494 0.084337 0.228916 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.996988 0.000000 0.003012 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.003012 0.000000 0.000000 0.996988 0.629518 0.045181 0.090361 0.234940 0.343373 0.093373 0.210843 0.352410 Consensus sequence: HATTAATTAD Alignment: DTAATTAATH ---ATYAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 20 Motif 20 Original Motif Original Motif Forward 1 6 0.015396 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.653722 0.346278 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: ATTAMAGG Reverse complement motif 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.346278 0.000000 0.653722 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: CCTYTAAT Alignment: ATTAMAGG ATYAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 49 Motif 49 Original Motif Original Motif Forward 3 6 0.034037 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.502646 0.000000 0.497354 0.000000 Consensus sequence: AGATAAAR Reverse complement motif 0.000000 0.000000 0.497354 0.502646 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: KTTTATCT Alignment: AGATAAAR --ATYAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 25 Motif 25 Original Motif Reverse Complement Backward 1 6 0.036844 Original motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.519243 0.000000 0.000000 0.480757 0.380269 0.000000 0.000000 0.619731 Consensus sequence: TTTAWW Reverse complement motif 0.619731 0.000000 0.000000 0.380269 0.480757 0.000000 0.000000 0.519243 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: WWTAAA Alignment: WWTAAA ATYAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 100 wwTAATAAww Reverse Complement Original Motif Backward 5 6 0.039492 Original motif 0.379278 0.168363 0.185939 0.266420 0.370028 0.172988 0.164662 0.292322 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.999075 0.000000 0.000000 0.000925 0.000000 0.000925 0.000000 0.999075 1.000000 0.000000 0.000000 0.000000 0.999075 0.000000 0.000000 0.000925 0.389454 0.166512 0.170213 0.273821 0.404255 0.154487 0.166512 0.274746 Consensus sequence: DHTAATAADD Reverse complement motif 0.274746 0.154487 0.166512 0.404255 0.273821 0.166512 0.170213 0.389454 0.000925 0.000000 0.000000 0.999075 0.000000 0.000000 0.000000 1.000000 0.999075 0.000925 0.000000 0.000000 0.000925 0.000000 0.000000 0.999075 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.292322 0.172988 0.164662 0.370028 0.266420 0.168363 0.185939 0.379278 Consensus sequence: DDTTATTAHD Alignment: DHTAATAADD TTTMAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 6 Motif name: Motif 6 Original motif 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.417017 0.582983 0.000000 0.000000 1.000000 0.000000 0.000000 0.503151 0.496849 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: CCCASCMC Reverse complement motif 0.000000 0.000000 1.000000 0.000000 0.000000 0.496849 0.000000 0.503151 0.000000 0.000000 1.000000 0.000000 0.000000 0.582983 0.417017 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: GYGSTGGG *************************************************************** Best Matches for Top Significant Motif ID 6 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 115 ysCmAGCACwy Reverse Complement Reverse Complement Forward 3 8 0.021278 Original motif 0.204848 0.269742 0.201720 0.323690 0.183737 0.353401 0.288507 0.174355 0.000000 0.995309 0.003127 0.001564 0.417514 0.570758 0.010946 0.000782 0.928851 0.060203 0.007819 0.003127 0.000000 0.010164 0.987490 0.002346 0.000782 0.997654 0.000782 0.000782 0.965598 0.000782 0.030493 0.003127 0.000782 0.998436 0.000000 0.000782 0.262705 0.245504 0.133698 0.358092 0.178264 0.355747 0.176701 0.289289 Consensus sequence: HVCMAGCACHH Reverse complement motif 0.178264 0.176701 0.355747 0.289289 0.358092 0.245504 0.133698 0.262705 0.000782 0.000000 0.998436 0.000782 0.003127 0.000782 0.030493 0.965598 0.000782 0.000782 0.997654 0.000782 0.000000 0.987490 0.010164 0.002346 0.003127 0.060203 0.007819 0.928851 0.417514 0.010946 0.570758 0.000782 0.000000 0.003127 0.995309 0.001564 0.183737 0.288507 0.353401 0.174355 0.323690 0.269742 0.201720 0.204848 Consensus sequence: DHGTGCTRGVH Alignment: DHGTGCTRGVH --GYGSTGGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 111 ccCCmCaCCCCcc Original Motif Original Motif Backward 3 8 0.026686 Original motif 0.201315 0.415776 0.174199 0.208710 0.184059 0.364832 0.202136 0.248973 0.015612 0.964667 0.007395 0.012325 0.009860 0.956450 0.025472 0.008217 0.313065 0.672145 0.011504 0.003287 0.013147 0.956450 0.023007 0.007395 0.638455 0.051767 0.092851 0.216927 0.004108 0.978636 0.013147 0.004108 0.004108 0.843057 0.025472 0.127362 0.013969 0.957272 0.023007 0.005752 0.096138 0.760887 0.068200 0.074774 0.176664 0.392769 0.224322 0.206245 0.246508 0.347576 0.191454 0.214462 Consensus sequence: HBCCCCACCCCBH Reverse complement motif 0.246508 0.191454 0.347576 0.214462 0.176664 0.224322 0.392769 0.206245 0.096138 0.068200 0.760887 0.074774 0.013969 0.023007 0.957272 0.005752 0.004108 0.025472 0.843057 0.127362 0.004108 0.013147 0.978636 0.004108 0.216927 0.051767 0.092851 0.638455 0.013147 0.023007 0.956450 0.007395 0.313065 0.011504 0.672145 0.003287 0.009860 0.025472 0.956450 0.008217 0.015612 0.007395 0.964667 0.012325 0.184059 0.202136 0.364832 0.248973 0.201315 0.174199 0.415776 0.208710 Consensus sequence: DBGGGGTGGGGBD Alignment: HBCCCCACCCCBH ---CCCASCMC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 93 cmCARCACTwr Original Motif Original Motif Backward 4 8 0.030511 Original motif 0.205379 0.332518 0.237164 0.224939 0.310513 0.261614 0.190709 0.237164 0.002445 0.990220 0.004890 0.002445 0.977995 0.002445 0.019560 0.000000 0.290954 0.000000 0.709046 0.000000 0.000000 0.997555 0.002445 0.000000 0.914425 0.002445 0.009780 0.073350 0.000000 0.997555 0.000000 0.002445 0.000000 0.002445 0.017115 0.980440 0.330073 0.234719 0.154034 0.281174 0.256724 0.217604 0.312958 0.212714 Consensus sequence: BHCAGCACTHV Reverse complement motif 0.256724 0.312958 0.217604 0.212714 0.281174 0.234719 0.154034 0.330073 0.980440 0.002445 0.017115 0.000000 0.000000 0.000000 0.997555 0.002445 0.073350 0.002445 0.009780 0.914425 0.000000 0.002445 0.997555 0.000000 0.290954 0.709046 0.000000 0.000000 0.000000 0.002445 0.019560 0.977995 0.002445 0.004890 0.990220 0.002445 0.237164 0.261614 0.190709 0.310513 0.205379 0.237164 0.332518 0.224939 Consensus sequence: VHAGTGCTGHB Alignment: BHCAGCACTHV CCCASCMC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Original Motif Original Motif Backward 4 8 0.032204 Original motif 0.236234 0.284192 0.236234 0.243339 0.166963 0.301954 0.264654 0.266430 0.063943 0.797513 0.063943 0.074600 0.001776 0.966252 0.024867 0.007105 0.936057 0.030195 0.030195 0.003552 0.001776 0.003552 0.992895 0.001776 0.000000 0.998224 0.001776 0.000000 0.010657 0.001776 0.035524 0.952043 0.001776 0.992895 0.001776 0.003552 0.495560 0.481350 0.023091 0.000000 0.191829 0.305506 0.248668 0.253996 0.238011 0.223801 0.284192 0.253996 Consensus sequence: BBCCAGCTCMBD Reverse complement motif 0.238011 0.284192 0.223801 0.253996 0.191829 0.248668 0.305506 0.253996 0.000000 0.481350 0.023091 0.495560 0.001776 0.001776 0.992895 0.003552 0.952043 0.001776 0.035524 0.010657 0.000000 0.001776 0.998224 0.000000 0.001776 0.992895 0.003552 0.001776 0.003552 0.030195 0.030195 0.936057 0.001776 0.024867 0.966252 0.007105 0.063943 0.063943 0.797513 0.074600 0.166963 0.264654 0.301954 0.266430 0.236234 0.236234 0.284192 0.243339 Consensus sequence: HBYGAGCTGGBB Alignment: BBCCAGCTCMBD -CCCASCMC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 101 csCACCCCgg Original Motif Original Motif Forward 1 8 0.041527 Original motif 0.205394 0.419087 0.180498 0.195021 0.203320 0.319502 0.292531 0.184647 0.000000 0.964730 0.035270 0.000000 0.863071 0.012448 0.116183 0.008299 0.002075 0.993776 0.000000 0.004149 0.002075 0.846473 0.149378 0.002075 0.004149 0.912863 0.076763 0.006224 0.000000 0.962656 0.037344 0.000000 0.172199 0.228216 0.414938 0.184647 0.213693 0.244813 0.296680 0.244813 Consensus sequence: HVCACCCCBB Reverse complement motif 0.213693 0.296680 0.244813 0.244813 0.172199 0.414938 0.228216 0.184647 0.000000 0.037344 0.962656 0.000000 0.004149 0.076763 0.912863 0.006224 0.002075 0.149378 0.846473 0.002075 0.002075 0.000000 0.993776 0.004149 0.008299 0.012448 0.116183 0.863071 0.000000 0.035270 0.964730 0.000000 0.203320 0.292531 0.319502 0.184647 0.205394 0.180498 0.419087 0.195021 Consensus sequence: BBGGGGTGVD Alignment: HVCACCCCBB CCCASCMC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 94 Motif name: yrTCWCAAyr Original motif 0.207792 0.324675 0.116883 0.350649 0.441558 0.155844 0.272727 0.129870 0.000000 0.000000 0.000000 1.000000 0.012987 0.987013 0.000000 0.000000 0.727273 0.000000 0.000000 0.272727 0.000000 1.000000 0.000000 0.000000 0.974026 0.000000 0.025974 0.000000 1.000000 0.000000 0.000000 0.000000 0.155844 0.441558 0.064935 0.337662 0.259740 0.155844 0.415584 0.168831 Consensus sequence: HVTCACAAYD Reverse complement motif 0.259740 0.415584 0.155844 0.168831 0.155844 0.064935 0.441558 0.337662 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.025974 0.974026 0.000000 0.000000 1.000000 0.000000 0.272727 0.000000 0.000000 0.727273 0.012987 0.000000 0.987013 0.000000 1.000000 0.000000 0.000000 0.000000 0.129870 0.155844 0.272727 0.441558 0.350649 0.324675 0.116883 0.207792 Consensus sequence: HKTTGTGABH *************************************************************** Best Matches for Top Significant Motif ID 94 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 76 Sox2 Reverse Complement Original Motif Backward 2 10 0.007625 Original motif 0.040480 0.665667 0.133433 0.160420 0.029895 0.677130 0.032885 0.260090 0.488789 0.010463 0.005979 0.494768 0.002990 0.014948 0.010463 0.971599 0.020927 0.001495 0.008969 0.968610 0.056801 0.124066 0.790732 0.028401 0.127246 0.005988 0.013473 0.853293 0.095808 0.290419 0.115269 0.498503 0.612613 0.186186 0.057057 0.144144 0.039039 0.058559 0.039039 0.863363 0.040602 0.115789 0.667669 0.175940 0.048120 0.634586 0.126316 0.190977 0.641566 0.061747 0.054217 0.242470 0.551205 0.100904 0.236446 0.111446 0.730422 0.090361 0.091867 0.087349 Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif 0.087349 0.090361 0.091867 0.730422 0.111446 0.100904 0.236446 0.551205 0.242470 0.061747 0.054217 0.641566 0.048120 0.126316 0.634586 0.190977 0.040602 0.667669 0.115789 0.175940 0.863363 0.058559 0.039039 0.039039 0.144144 0.186186 0.057057 0.612613 0.498503 0.290419 0.115269 0.095808 0.853293 0.005988 0.013473 0.127246 0.056801 0.790732 0.124066 0.028401 0.968610 0.001495 0.008969 0.020927 0.971599 0.014948 0.010463 0.002990 0.494768 0.010463 0.005979 0.488789 0.029895 0.032885 0.677130 0.260090 0.040480 0.133433 0.665667 0.160420 Consensus sequence: TTTGCATMACAAWGG Alignment: CCWTTGTYATGCAAA ----HKTTGTGABH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 80 Pou5f1 Reverse Complement Original Motif Forward 6 10 0.012757 Original motif 0.046188 0.620235 0.048387 0.285191 0.423865 0.042460 0.020498 0.513177 0.008047 0.036576 0.026335 0.929042 0.034332 0.008766 0.057706 0.899196 0.086194 0.265157 0.602630 0.046019 0.303141 0.013148 0.021183 0.662527 0.150475 0.266618 0.135866 0.447042 0.902118 0.021914 0.017531 0.058437 0.012418 0.003652 0.010957 0.972973 0.007305 0.011687 0.905040 0.075968 0.010234 0.752193 0.094298 0.143275 0.769231 0.011722 0.021978 0.197070 0.651248 0.049927 0.231278 0.067548 0.881705 0.024247 0.055107 0.038942 0.145481 0.087436 0.152094 0.614989 Consensus sequence: CWTTGTHATGCAAAT Reverse complement motif 0.614989 0.087436 0.152094 0.145481 0.038942 0.024247 0.055107 0.881705 0.067548 0.049927 0.231278 0.651248 0.197070 0.011722 0.021978 0.769231 0.010234 0.094298 0.752193 0.143275 0.007305 0.905040 0.011687 0.075968 0.972973 0.003652 0.010957 0.012418 0.058437 0.021914 0.017531 0.902118 0.447042 0.266618 0.135866 0.150475 0.662527 0.013148 0.021183 0.303141 0.086194 0.602630 0.265157 0.046019 0.899196 0.008766 0.057706 0.034332 0.929042 0.036576 0.026335 0.008047 0.513177 0.042460 0.020498 0.423865 0.046188 0.048387 0.620235 0.285191 Consensus sequence: ATTTGCATHACAAWG Alignment: CWTTGTHATGCAAAT -----HKTTGTGABH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Original Motif Original Motif Backward 2 10 0.042641 Original motif 0.333333 0.095238 0.523810 0.047619 0.952381 0.000000 0.047619 0.000000 0.761905 0.095238 0.047619 0.095238 0.523810 0.047619 0.047619 0.380952 0.619048 0.047619 0.142857 0.190476 0.523810 0.142857 0.047619 0.285714 0.285714 0.047619 0.095238 0.571429 0.428571 0.047619 0.047619 0.476190 0.238095 0.142857 0.285714 0.333333 0.238095 0.523810 0.047619 0.190476 0.285714 0.523810 0.190476 0.000000 0.333333 0.333333 0.238095 0.095238 0.380952 0.333333 0.095238 0.190476 0.285714 0.238095 0.047619 0.428571 0.476190 0.238095 0.190476 0.095238 0.190476 0.380952 0.190476 0.238095 0.142857 0.285714 0.190476 0.380952 0.333333 0.380952 0.142857 0.142857 0.190476 0.428571 0.142857 0.238095 0.428571 0.285714 0.095238 0.190476 0.238095 0.333333 0.238095 0.190476 0.238095 0.285714 0.095238 0.380952 0.333333 0.523810 0.000000 0.142857 0.285714 0.428571 0.047619 0.238095 0.142857 0.571429 0.095238 0.190476 0.333333 0.428571 0.095238 0.142857 0.142857 0.571429 0.095238 0.190476 0.047619 0.523810 0.142857 0.285714 0.285714 0.523810 0.047619 0.142857 0.142857 0.619048 0.095238 0.142857 Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Reverse complement motif 0.142857 0.095238 0.619048 0.142857 0.285714 0.047619 0.523810 0.142857 0.047619 0.142857 0.523810 0.285714 0.142857 0.095238 0.571429 0.190476 0.333333 0.095238 0.428571 0.142857 0.142857 0.095238 0.571429 0.190476 0.285714 0.047619 0.428571 0.238095 0.333333 0.000000 0.523810 0.142857 0.380952 0.285714 0.095238 0.238095 0.238095 0.238095 0.333333 0.190476 0.190476 0.285714 0.095238 0.428571 0.190476 0.142857 0.428571 0.238095 0.333333 0.142857 0.380952 0.142857 0.380952 0.285714 0.190476 0.142857 0.190476 0.190476 0.380952 0.238095 0.095238 0.238095 0.190476 0.476190 0.428571 0.238095 0.047619 0.285714 0.190476 0.333333 0.095238 0.380952 0.095238 0.333333 0.238095 0.333333 0.285714 0.190476 0.523810 0.000000 0.238095 0.047619 0.523810 0.190476 0.333333 0.142857 0.285714 0.238095 0.476190 0.047619 0.047619 0.428571 0.571429 0.047619 0.095238 0.285714 0.285714 0.142857 0.047619 0.523810 0.190476 0.047619 0.142857 0.619048 0.380952 0.047619 0.047619 0.523810 0.095238 0.095238 0.047619 0.761905 0.000000 0.000000 0.047619 0.952381 0.333333 0.523810 0.095238 0.047619 Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC -------------------HVTCACAAYD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 62 TBP Original Motif Original Motif Backward 5 10 0.042965 Original motif 0.156812 0.372751 0.390746 0.079692 0.041131 0.118252 0.046272 0.794344 0.904884 0.000000 0.005141 0.089974 0.007712 0.025707 0.005141 0.961440 0.910026 0.000000 0.012853 0.077121 0.688946 0.000000 0.000000 0.311054 0.925450 0.007712 0.051414 0.015424 0.570694 0.005141 0.113111 0.311054 0.398458 0.113111 0.403599 0.084833 0.143959 0.347044 0.385604 0.123393 0.213368 0.377892 0.329049 0.079692 0.210797 0.326478 0.329049 0.133676 0.210797 0.303342 0.329049 0.156812 0.174807 0.275064 0.357326 0.192802 0.197943 0.259640 0.359897 0.182519 Consensus sequence: STATAAAWRVVVVBV Reverse complement motif 0.197943 0.359897 0.259640 0.182519 0.174807 0.357326 0.275064 0.192802 0.210797 0.329049 0.303342 0.156812 0.210797 0.329049 0.326478 0.133676 0.213368 0.329049 0.377892 0.079692 0.143959 0.385604 0.347044 0.123393 0.398458 0.403599 0.113111 0.084833 0.311054 0.005141 0.113111 0.570694 0.015424 0.007712 0.051414 0.925450 0.311054 0.000000 0.000000 0.688946 0.077121 0.000000 0.012853 0.910026 0.961440 0.025707 0.005141 0.007712 0.089974 0.000000 0.005141 0.904884 0.794344 0.118252 0.046272 0.041131 0.156812 0.390746 0.372751 0.079692 Consensus sequence: VBVVVVMWTTTATAS Alignment: STATAAAWRVVVVBV -HVTCACAAYD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 83 NR2F1 Reverse Complement Original Motif Forward 1 10 0.046354 Original motif 0.000000 0.000000 0.153846 0.846154 0.076923 0.000000 0.923077 0.000000 0.923077 0.000000 0.076923 0.000000 0.461538 0.538462 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.230769 0.000000 0.769231 0.000000 0.153846 0.000000 0.846154 0.076923 0.000000 0.000000 0.923077 0.153846 0.000000 0.846154 0.000000 0.461538 0.307692 0.230769 0.000000 0.461538 0.384615 0.076923 0.076923 0.076923 0.769231 0.076923 0.076923 0.230769 0.461538 0.000000 0.307692 0.000000 0.230769 0.230769 0.538462 Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif 0.538462 0.230769 0.230769 0.000000 0.230769 0.000000 0.461538 0.307692 0.076923 0.076923 0.769231 0.076923 0.076923 0.384615 0.076923 0.461538 0.000000 0.307692 0.230769 0.461538 0.153846 0.846154 0.000000 0.000000 0.923077 0.000000 0.000000 0.076923 0.846154 0.153846 0.000000 0.000000 0.769231 0.230769 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.461538 0.000000 0.538462 0.000000 0.000000 0.000000 0.076923 0.923077 0.076923 0.923077 0.000000 0.000000 0.846154 0.000000 0.153846 0.000000 Consensus sequence: AKGYYCAAAGRTCA Alignment: TGAMCTTTGMMCYT HKTTGTGABH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 55 Motif name: Motif 55 Original motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: TTTAAAA Reverse complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: TTTTAAA *************************************************************** Best Matches for Top Significant Motif ID 55 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 120 wtTTTwAAAaw Original Motif Original Motif Forward 3 7 0.002861 Original motif 0.269426 0.199324 0.154983 0.376267 0.216216 0.197635 0.141470 0.444679 0.000000 0.000000 0.000845 0.999155 0.000422 0.000000 0.000000 0.999578 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 0.999578 0.000000 0.000000 0.000422 0.999155 0.000845 0.000000 0.000000 0.444679 0.141470 0.197635 0.216216 0.376267 0.154983 0.199324 0.269426 Consensus sequence: HHTTTWAAADD Reverse complement motif 0.269426 0.154983 0.199324 0.376267 0.216216 0.141470 0.197635 0.444679 0.000000 0.000845 0.000000 0.999155 0.000422 0.000000 0.000000 0.999578 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 0.999578 0.000000 0.000000 0.000422 0.999155 0.000000 0.000845 0.000000 0.444679 0.197635 0.141470 0.216216 0.376267 0.199324 0.154983 0.269426 Consensus sequence: DDTTTWAAAHH Alignment: HHTTTWAAADD --TTTAAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 Motif 9 Original Motif Reverse Complement Forward 2 7 0.014256 Original motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.343612 0.000000 0.000000 0.656388 0.477974 0.000000 0.000000 0.522026 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: TTTWWAAA Reverse complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.522026 0.000000 0.000000 0.477974 0.656388 0.000000 0.000000 0.343612 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: TTTWWAAA Alignment: TTTWWAAA -TTTAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 91 wtATTTTAww Original Motif Reverse Complement Forward 1 7 0.036821 Original motif 0.282116 0.141898 0.197313 0.378673 0.215785 0.200672 0.121746 0.461797 0.999160 0.000000 0.000840 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000840 0.000840 0.000840 0.997481 0.000000 0.028547 0.000000 0.971453 1.000000 0.000000 0.000000 0.000000 0.304786 0.156171 0.092359 0.446683 0.272880 0.198153 0.163728 0.365239 Consensus sequence: DHATTTTAWH Reverse complement motif 0.365239 0.198153 0.163728 0.272880 0.446683 0.156171 0.092359 0.304786 0.000000 0.000000 0.000000 1.000000 0.971453 0.028547 0.000000 0.000000 0.997481 0.000840 0.000840 0.000840 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000840 0.999160 0.461797 0.200672 0.121746 0.215785 0.378673 0.141898 0.197313 0.282116 Consensus sequence: HWTAAAATHD Alignment: HWTAAAATHD TTTAAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Reverse Complement Original Motif Backward 1 7 0.042827 Original motif 0.286469 0.149049 0.174419 0.390063 0.265328 0.236786 0.158562 0.339323 0.998943 0.000000 0.001057 0.000000 0.001057 0.000000 0.000000 0.998943 0.003171 0.001057 0.335095 0.660677 0.005285 0.000000 0.001057 0.993658 0.003171 0.001057 0.000000 0.995772 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.355180 0.213531 0.125793 0.305497 0.373150 0.153277 0.142706 0.330867 Consensus sequence: DHATKTTTAHH Reverse complement motif 0.330867 0.153277 0.142706 0.373150 0.305497 0.213531 0.125793 0.355180 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.995772 0.001057 0.000000 0.003171 0.993658 0.000000 0.001057 0.005285 0.660677 0.001057 0.335095 0.003171 0.998943 0.000000 0.000000 0.001057 0.000000 0.000000 0.001057 0.998943 0.339323 0.236786 0.158562 0.265328 0.390063 0.149049 0.174419 0.286469 Consensus sequence: HHTAAARATHD Alignment: DHATKTTTAHH ----TTTTAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 62 TBP Reverse Complement Reverse Complement Forward 8 7 0.058454 Original motif 0.156812 0.372751 0.390746 0.079692 0.041131 0.118252 0.046272 0.794344 0.904884 0.000000 0.005141 0.089974 0.007712 0.025707 0.005141 0.961440 0.910026 0.000000 0.012853 0.077121 0.688946 0.000000 0.000000 0.311054 0.925450 0.007712 0.051414 0.015424 0.570694 0.005141 0.113111 0.311054 0.398458 0.113111 0.403599 0.084833 0.143959 0.347044 0.385604 0.123393 0.213368 0.377892 0.329049 0.079692 0.210797 0.326478 0.329049 0.133676 0.210797 0.303342 0.329049 0.156812 0.174807 0.275064 0.357326 0.192802 0.197943 0.259640 0.359897 0.182519 Consensus sequence: STATAAAWRVVVVBV Reverse complement motif 0.197943 0.359897 0.259640 0.182519 0.174807 0.357326 0.275064 0.192802 0.210797 0.329049 0.303342 0.156812 0.210797 0.329049 0.326478 0.133676 0.213368 0.329049 0.377892 0.079692 0.143959 0.385604 0.347044 0.123393 0.398458 0.403599 0.113111 0.084833 0.311054 0.005141 0.113111 0.570694 0.015424 0.007712 0.051414 0.925450 0.311054 0.000000 0.000000 0.688946 0.077121 0.000000 0.012853 0.910026 0.961440 0.025707 0.005141 0.007712 0.089974 0.000000 0.005141 0.904884 0.794344 0.118252 0.046272 0.041131 0.156812 0.390746 0.372751 0.079692 Consensus sequence: VBVVVVMWTTTATAS Alignment: VBVVVVMWTTTATAS -------TTTTAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 96 Motif name: mdAAcCAACG Original motif 0.357143 0.261905 0.214286 0.166667 0.309524 0.071429 0.261905 0.357143 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.190476 0.642857 0.119048 0.047619 0.000000 0.952381 0.047619 0.000000 0.952381 0.000000 0.047619 0.000000 1.000000 0.000000 0.000000 0.000000 0.023810 0.785714 0.047619 0.142857 0.142857 0.047619 0.761905 0.047619 Consensus sequence: VDAACCAACG Reverse complement motif 0.142857 0.761905 0.047619 0.047619 0.023810 0.047619 0.785714 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.047619 0.952381 0.000000 0.047619 0.952381 0.000000 0.190476 0.119048 0.642857 0.047619 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.357143 0.071429 0.261905 0.309524 0.166667 0.261905 0.214286 0.357143 Consensus sequence: CGTTGGTTDB *************************************************************** Best Matches for Top Significant Motif ID 96 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Reverse Complement Reverse Complement Backward 3 10 0.024416 Original motif 0.700000 0.050000 0.000000 0.250000 1.000000 0.000000 0.000000 0.000000 0.500000 0.125000 0.200000 0.175000 0.775000 0.225000 0.000000 0.000000 0.950000 0.050000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.075000 0.050000 0.375000 0.575000 0.050000 0.000000 1.000000 0.000000 0.000000 0.000000 0.900000 0.025000 0.075000 0.000000 0.900000 0.075000 0.025000 0.000000 0.700000 0.175000 0.000000 0.125000 0.775000 0.000000 0.150000 0.075000 0.525000 0.300000 0.175000 0.000000 Consensus sequence: AADAAAAMAAAAAM Reverse complement motif 0.000000 0.300000 0.175000 0.525000 0.075000 0.000000 0.150000 0.775000 0.125000 0.175000 0.000000 0.700000 0.000000 0.075000 0.025000 0.900000 0.000000 0.025000 0.075000 0.900000 0.000000 0.000000 0.000000 1.000000 0.375000 0.050000 0.575000 0.000000 0.050000 0.000000 0.075000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.050000 0.000000 0.950000 0.000000 0.225000 0.000000 0.775000 0.175000 0.125000 0.200000 0.500000 0.000000 0.000000 0.000000 1.000000 0.250000 0.050000 0.000000 0.700000 Consensus sequence: YTTTTTRTTTTDTT Alignment: YTTTTTRTTTTDTT --CGTTGGTTDB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 70 Foxq1 Reverse Complement Original Motif Backward 1 10 0.026638 Original motif 0.222222 0.222222 0.166667 0.388889 0.722222 0.055556 0.166667 0.055556 0.277778 0.111111 0.000000 0.611111 0.166667 0.000000 0.000000 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.944444 0.000000 0.055556 0.000000 0.000000 0.055556 0.222222 0.722222 0.333333 0.000000 0.166667 0.500000 Consensus sequence: HATTGTTTATW Reverse complement motif 0.500000 0.000000 0.166667 0.333333 0.722222 0.055556 0.222222 0.000000 0.000000 0.000000 0.055556 0.944444 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.000000 0.166667 0.611111 0.111111 0.000000 0.277778 0.055556 0.055556 0.166667 0.722222 0.388889 0.222222 0.166667 0.222222 Consensus sequence: WATAAACAATH Alignment: HATTGTTTATW -CGTTGGTTDB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Original Motif Reverse Complement Backward 3 10 0.036655 Original motif 0.193548 0.032258 0.451613 0.322581 0.129032 0.258065 0.387097 0.225806 0.354839 0.129032 0.258065 0.258065 0.000000 0.000000 0.000000 1.000000 0.419355 0.000000 0.580645 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.483871 0.000000 0.516129 0.000000 0.000000 0.000000 0.225806 0.774194 0.258065 0.032258 0.129032 0.580645 0.064516 0.032258 0.129032 0.774194 Consensus sequence: KBDTRTTTRTTT Reverse complement motif 0.774194 0.032258 0.129032 0.064516 0.580645 0.032258 0.129032 0.258065 0.774194 0.000000 0.225806 0.000000 0.483871 0.516129 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.419355 0.580645 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.258065 0.129032 0.258065 0.354839 0.129032 0.387097 0.258065 0.225806 0.193548 0.451613 0.032258 0.322581 Consensus sequence: AAAMAAAMADBY Alignment: AAAMAAAMADBY VDAACCAACG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 83 NR2F1 Reverse Complement Original Motif Forward 1 10 0.037612 Original motif 0.000000 0.000000 0.153846 0.846154 0.076923 0.000000 0.923077 0.000000 0.923077 0.000000 0.076923 0.000000 0.461538 0.538462 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.230769 0.000000 0.769231 0.000000 0.153846 0.000000 0.846154 0.076923 0.000000 0.000000 0.923077 0.153846 0.000000 0.846154 0.000000 0.461538 0.307692 0.230769 0.000000 0.461538 0.384615 0.076923 0.076923 0.076923 0.769231 0.076923 0.076923 0.230769 0.461538 0.000000 0.307692 0.000000 0.230769 0.230769 0.538462 Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif 0.538462 0.230769 0.230769 0.000000 0.230769 0.000000 0.461538 0.307692 0.076923 0.076923 0.769231 0.076923 0.076923 0.384615 0.076923 0.461538 0.000000 0.307692 0.230769 0.461538 0.153846 0.846154 0.000000 0.000000 0.923077 0.000000 0.000000 0.076923 0.846154 0.153846 0.000000 0.000000 0.769231 0.230769 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.461538 0.000000 0.538462 0.000000 0.000000 0.000000 0.076923 0.923077 0.076923 0.923077 0.000000 0.000000 0.846154 0.000000 0.153846 0.000000 Consensus sequence: AKGYYCAAAGRTCA Alignment: TGAMCTTTGMMCYT CGTTGGTTDB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 76 Sox2 Original Motif Reverse Complement Forward 1 10 0.038201 Original motif 0.040480 0.665667 0.133433 0.160420 0.029895 0.677130 0.032885 0.260090 0.488789 0.010463 0.005979 0.494768 0.002990 0.014948 0.010463 0.971599 0.020927 0.001495 0.008969 0.968610 0.056801 0.124066 0.790732 0.028401 0.127246 0.005988 0.013473 0.853293 0.095808 0.290419 0.115269 0.498503 0.612613 0.186186 0.057057 0.144144 0.039039 0.058559 0.039039 0.863363 0.040602 0.115789 0.667669 0.175940 0.048120 0.634586 0.126316 0.190977 0.641566 0.061747 0.054217 0.242470 0.551205 0.100904 0.236446 0.111446 0.730422 0.090361 0.091867 0.087349 Consensus sequence: CCWTTGTYATGCAAA Reverse complement motif 0.087349 0.090361 0.091867 0.730422 0.111446 0.100904 0.236446 0.551205 0.242470 0.061747 0.054217 0.641566 0.048120 0.126316 0.634586 0.190977 0.040602 0.667669 0.115789 0.175940 0.863363 0.058559 0.039039 0.039039 0.144144 0.186186 0.057057 0.612613 0.498503 0.290419 0.115269 0.095808 0.853293 0.005988 0.013473 0.127246 0.056801 0.790732 0.124066 0.028401 0.968610 0.001495 0.008969 0.020927 0.971599 0.014948 0.010463 0.002990 0.494768 0.010463 0.005979 0.488789 0.029895 0.032885 0.677130 0.260090 0.040480 0.133433 0.665667 0.160420 Consensus sequence: TTTGCATMACAAWGG Alignment: TTTGCATMACAAWGG VDAACCAACG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-19-2016 22:23:05 Runtime: 867.302786 seconds MOTIFSIM is written by Ngoc Tam L. 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