**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.1 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 5 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Phylogenetic tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # DREME_DM230.txt 1 1 MEME_DM230.txt 20 2 PScanChIP_DM230.txt 14 3 RSAT_peak-motifs_DM230.txt 10 4 W-ChIPMotifs_DM230.txt 11 5 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** *************************************************************** Combined Motifs for Top Best Match Motif ID 1 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 csGCCCCGCCCCsc Original Motif Reverse Complement GGCGGGGC BBGGGGCGGGGCVD VDGGCGGGGCBBGG Direction: Backward Position #: 3 Overlap #: 8 Alignment: ----GGCGGGGC-- BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Original Motif CCBBGCCCCGCCHV BCCGCCCCGCCCCBB BCCGCSCCSCSCCBV Direction: Forward Position #: 2 Overlap #: 14 Alignment: -CCBBGCCCCGCCHV BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Reverse Complement Reverse Complement VBGGSGSGGSGCGGB MSGGGGCGGGGYSG VBGGGGCGGGGCGGB Direction: Forward Position #: 1 Overlap #: 14 Alignment: VBGGSGSGGSGCGGB MSGGGGCGGGGYSG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement BCCGCCCCGCCCCBB GCVCCGCCMCCYCC BCSSCCCSSCCCCBCC Direction: Forward Position #: 3 Overlap #: 13 Alignment: BCCGCCCCGCCCCBB- --GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Reverse Complement BCSSCCCSSCCCCBCC GCCYCMCCCD BCCYCCCCCHCCCBCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: BCSSCCCSSCCCCBCC GCCYCMCCCD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Original Motif GGBGGGDGGGGGKGGB BBVGCCBVGGCCTV GBBGSSBSGGSSTGGB Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGBGGGDGGGGGKGGB BBVGCCBVGGCCTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 Combined Motif Original Motif Reverse Complement GBBGSSBSGGSSTGGB CGCGBMGCCG GBBSGCGBGGCCKGGB Direction: Forward Position #: 4 Overlap #: 10 Alignment: GBBGSSBSGGSSTGGB ---CGCGBMGCCG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Reverse Complement Original Motif BCCYGGCCBCGCSBBC CGGVGCCGCVGC BCCCGGCSCCGCVGCC Direction: Forward Position #: 4 Overlap #: 12 Alignment: BCCYGGCCBCGCSBBC ---CGGVGCCGCVGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement BCCCGGCSCCGCVGCC MSGKKRCGCWDCABTGBBCD VCSBGRCGCHKCVBYVBBCD Direction: Forward Position #: 1 Overlap #: 16 Alignment: BCCCGGCSCCGCVGCC---- MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Reverse Complement VCSBGRCGCHKCVBYVBBCD YCGCCCACGCH YCBCCSRCGCHKCVBYVBBCD Direction: Forward Position #: 2 Overlap #: 10 Alignment: -VCSBGRCGCHKCVBYVBBCD YCGCCCACGCH---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Original Motif HGVBVKBBGYHGCGKSGGBGK RGRGGAGRRGGHGGDG RVRGGVGVDGSHGSGGSGGBGK Direction: Forward Position #: 2 Overlap #: 15 Alignment: -HGVBVKBBGYHGCGKSGGBGK RGRGGAGRRGGHGGDG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 2 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 TFM2 Original Motif Original Motif RGRAGARRGARRAR RGRGGAGRRGGHGGDG RGRAGRRGGVRRRGRG Direction: Backward Position #: 1 Overlap #: 14 Alignment: --RGRAGARRGARRAR RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif RGRAGRRGGVRRRGRG DGVBCABTGDWGCGKRRCSR RGRDVAVKGVRGVGDRRCSR Direction: Forward Position #: 1 Overlap #: 16 Alignment: RGRAGRRGGVRRRGRG---- DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Original Motif RGRDVAVKGVRGVGDRRCSR HDWVAAAHAAAAAMAAAMWWWHBWA DRDVAAADRAARMRARAMVDWHBWA Direction: Forward Position #: 1 Overlap #: 20 Alignment: RGRDVAVKGVRGVGDRRCSR----- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Reverse Complement TWVHWDBRTKTMYMTTKHTTTBDMD KKKAGGDGGAKKMGBBGKMG KKDDDBDBGDKKMKVDKKHGTTBDMD Direction: Forward Position #: 2 Overlap #: 19 Alignment: -TWVHWDBRTKTMYMTTKHTTTBDMD KKKAGGDGGAKKMGBBGKMG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif KKDDDBDBGDKKMKVDKKHGTTBDMD WTKTTTTTHWTTTTTTBT KKDDDTDTKTKKHDYTDTHKTTBDMD Direction: Forward Position #: 5 Overlap #: 18 Alignment: KKDDDBDBGDKKMKVDKKHGTTBDMD ----WTKTTTTTHWTTTTTTBT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Original Motif DRDVAARHADAMDHRRARADADDDRY GGMGGRGGCGGVGC DRDVAARHADAMDHRRAGRVRDDGGCGGVGC Direction: Forward Position #: 18 Overlap #: 9 Alignment: DRDVAARHADAMDHRRARADADDDRY----- -----------------GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Original Motif Reverse Complement DRDVAARHADAMDHRRAGRVRDDGGCGGVGC TWAAWTTVTGAAAAAHWW TWAADWWVWRAAAAADAWGRVRDDGGCGGVGC Direction: Forward Position #: 2 Overlap #: 17 Alignment: -DRDVAARHADAMDHRRAGRVRDDGGCGGVGC TWAAWTTVTGAAAAAHWW-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif TWAADWWVWRAAAAADAWGRVRDDGGCGGVGC AWAAAWTWAAASWA TWAADAWAWAWWAAAAVWRRVRDDGGCGGVGC Direction: Forward Position #: 6 Overlap #: 14 Alignment: TWAADWWVWRAAAAADAWGRVRDDGGCGGVGC -----AWAAAWTWAAASWA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif TWAADAWAWAWWAAAAVWRRVRDDGGCGGVGC ATKAAWTTTTRMAABAHHTW TWAATWWAWWTWWAAAMDAVHDDDGGCGGVGC Direction: Forward Position #: 4 Overlap #: 20 Alignment: TWAADAWAWAWWAAAAVWRRVRDDGGCGGVGC ---ATKAAWTTTTRMAABAHHTW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Reverse Complement Original Motif GCVCCGCCHDDHBTDYTTTWWAWWTWWATTWA CSKCCCCGCCCCSY CSGCCCCGCCCHVYBTDYTTTWWAWWTWWATTWA Direction: Forward Position #: 3 Overlap #: 12 Alignment: --GCVCCGCCHDDHBTDYTTTWWAWWTWWATTWA CSKCCCCGCCCCSY-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 3 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 TFM11 Original Motif Original Motif AWAAAWTWAAASWA HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAAHAAAWWAAAAVWWWHBWA Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------AWAAAWTWAAASWA----- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Original Motif Reverse Complement HDWVAAAHAAAWWAAAAVWWWHBWA ABAAAAAAWHAAAAARAW WDAAAAAAADAAAAAAAHWWWHBWA Direction: Forward Position #: 1 Overlap #: 18 Alignment: HDWVAAAHAAAWWAAAAVWWWHBWA ABAAAAAAWHAAAAARAW------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif WDAAAAAAADAAAAAAAHWWWHBWA ATKAAWTTTTRMAABAHHTW AHDAAAWWWWRAAAWAAHWWWHBWA Direction: Forward Position #: 1 Overlap #: 20 Alignment: WDAAAAAAADAAAAAAAHWWWHBWA ATKAAWTTTTRMAABAHHTW----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Original Motif AHDAAAWWWWRAAAWAAHWWWHBWA AAATRWTAAAATCA AHDAAATDWTAAAATMAHWWWHBWA Direction: Forward Position #: 4 Overlap #: 14 Alignment: AHDAAAWWWWRAAAWAAHWWWHBWA ---AAATRWTAAAATCA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement AHDAAATDWTAAAATMAHWWWHBWA TWAAWTTVTGAAAAAHWW ATWAAWTTHTRAAAWAAWWWWHBWA Direction: Forward Position #: 2 Overlap #: 18 Alignment: AHDAAATDWTAAAATMAHWWWHBWA -TWAAWTTVTGAAAAAHWW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Reverse Complement TWVHWWWWTTWTTTMAHAAWTTWAT AAATTKTATTTAWT TWVAAATTKTATTTAWTAAWTTWAT Direction: Forward Position #: 4 Overlap #: 14 Alignment: TWVHWWWWTTWTTTMAHAAWTTWAT ---AAATTKTATTTAWT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif ATWAAWTTAWTAAATARAATTTBWA AATHATATWTHAAA ATAAWWWTATTWAAWARAATTTBWA Direction: Forward Position #: 3 Overlap #: 14 Alignment: ATWAAWTTAWTAAATARAATTTBWA --AATHATATWTHAAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Original Motif ATAAWWWTATTWAAWARAATTTBWA AATTYDGAARTAWW AWAWTHWKAWDWAAWARAATTTBWA Direction: Forward Position #: 2 Overlap #: 14 Alignment: ATAAWWWTATTWAAWARAATTTBWA -AATTYDGAARTAWW---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 2 Original Motif Original Motif AWAWTHWKAWDWAAWARAATTTBWA RGRAGARRGARRAR ADAAKHRGAADDAAWARAATTTBWA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AWAWTHWKAWDWAAWARAATTTBWA RGRAGARRGARRAR----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Reverse Complement Reverse Complement TWVAAATTKTWTTDHTTCKHYTTHT DDTATTATTTDH TWVAAWWTWTTWTTHHDCKHYTTHT Direction: Forward Position #: 6 Overlap #: 12 Alignment: TWVAAATTKTWTTDHTTCKHYTTHT -----DDTATTATTTDH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 4 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 TFM11 Original Motif Original Motif AAAAWTTRCWT HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAAHAAAAAAAAAWWTAYHWA Direction: Forward Position #: 14 Overlap #: 11 Alignment: -------------AAAAWTTRCWT- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif HDWVAAAHAAAAAAAAAWWTAYHWA ATKAAWTTTTRMAABAHHTW WHWDAAWTWWAAAAAAAHTWAYHWA Direction: Forward Position #: 1 Overlap #: 20 Alignment: HDWVAAAHAAAAAAAAAWWTAYHWA ATKAAWTTTTRMAABAHHTW----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Original Motif Reverse Complement WHWDAAWTWWAAAAAAAHTWAYHWA ABAAAAAAWHAAAAARAW ABWAAAAWWDAAAAAAAWTWAYHWA Direction: Forward Position #: 1 Overlap #: 18 Alignment: WHWDAAWTWWAAAAAAAHTWAYHWA ABAAAAAAWHAAAAARAW------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Reverse Complement TWHKTWAWTTTTTTTDWWTTTTWVT AAATTKTATTTAWT TWHKAAATTKTWTTTAWTTTTTWVT Direction: Forward Position #: 5 Overlap #: 14 Alignment: TWHKTWAWTTTTTTTDWWTTTTWVT ----AAATTKTATTTAWT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif TWHKAAATTKTWTTTAWTTTTTWVT AATHATATWTHAAA TWHKAAATTDTATTTHAWWTTTWVT Direction: Forward Position #: 6 Overlap #: 14 Alignment: TWHKAAATTKTWTTTAWTTTTTWVT -----AATHATATWTHAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Original Motif ABWAAAWWTHAAATADAATTTYHWA AAATRWTAAAATCA ABAAAWDWTAAAATMAAATTTYHWA Direction: Forward Position #: 3 Overlap #: 14 Alignment: ABWAAAWWTHAAATADAATTTYHWA --AAATRWTAAAATCA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Original Motif TWHKAAATTTRATTTTAWDWTTTVT ACAAWTRATTTTGA ACWAWTRAWTTTGATTTTAWDWTTTVT Direction: Forward Position #: 3 Overlap #: 12 Alignment: --TWHKAAATTTRATTTTAWDWTTTVT ACAAWTRATTTTGA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Reverse Complement ABAAAWDWTAAAATCAAAWTKAWTWGT TWAAWTTVTGAAAAAHWW TWAAHWWATGWWAAAATHAAAWTKAWTWGT Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---ABAAAWDWTAAAATCAAAWTKAWTWGT TWAAWTTVTGAAAAAHWW------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Original Motif Original Motif TWAAHWWATGWWAAAATHAAAWTKAWTWGT DBGTAAATAHD TWAAHWWVDTAWAWAHWHAAAWTKAWTWGT Direction: Forward Position #: 7 Overlap #: 11 Alignment: TWAAHWWATGWWAAAATHAAAWTKAWTWGT ------DBGTAAATAHD------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Reverse Complement TWAAHWWVDTAWAWAHWHAAAWTKAWTWGT TWSTTTWAWTTTWT TWAWTTWADTWWATAHWHAAAWTKAWTWGT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TWAAHWWVDTAWAWAHWHAAAWTKAWTWGT TWSTTTWAWTTTWT---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 5 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Motif 3 Reverse Complement Reverse Complement AAATTKTATTTAWT TWSTTTWAWTTTWT WAATTTTATTTWWT Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAATTKTATTTAWT TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Reverse Complement WAATTTTATTTWWT TGATTTTAWKATTT TRATTTTAWTWTTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: WAATTTTATTTWWT TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Original Motif AAAWAWTAAAATMA HDWVAAAHAAAAAMAAAMWWWHBWA AAWWADWAAAAWMAAMAAAMWWWHBWA Direction: Forward Position #: 3 Overlap #: 12 Alignment: AAAWAWTAAAATMA------------- --HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement AAWWADWAAAAWMAAMAAAMWWWHBWA ABAAAAAAWHAAAAARAW AADAAAWAAAAAAAAAAAWMWWWHBWA Direction: Forward Position #: 2 Overlap #: 18 Alignment: AAWWADWAAAAWMAAMAAAMWWWHBWA -ABAAAAAAWHAAAAARAW-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Original Motif AADAAAWAAAAAAAAAAAWMWWWHBWA AATTYDGAARTAWW AATTHADAAAWAAAAAAAWMWWWHBWA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AADAAAWAAAAAAAAAAAWMWWWHBWA AATTYDGAARTAWW------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Original Motif Reverse Complement AATTHADAAAWAAAAAAAWMWWWHBWA TWAAWTTVTGAAAAAHWW TWAAWTTHWGAAAWAWWAAAAWMWWWHBWA Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---AATTHADAAAWAAAAAAAWMWWWHBWA TWAAWTTVTGAAAAAHWW------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Reverse Complement Reverse Complement TWVHWWWYWTTTTWWTWTTTCWHAAWTTWA TCAAAATKAWTTGT TWVHWWWYWTTTTWWTWTTTCAAAATTWWWTGT Direction: Forward Position #: 20 Overlap #: 11 Alignment: TWVHWWWYWTTTTWWTWTTTCWHAAWTTWA--- -------------------TCAAAATKAWTTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif ACAWWWAATTTTGAAAWAWWAAAAWMWWWHBWA AATHATATWTHAAA ACAWWWAAWTWWKAWWTAAAAAAAWMWWWHBWA Direction: Forward Position #: 8 Overlap #: 14 Alignment: ACAWWWAATTTTGAAAWAWWAAAAWMWWWHBWA -------AATHATATWTHAAA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Reverse Complement TWVHWWWYWTTTTTTTAWWTRWWAWTTWWWTGT WAHHTVTTYKAAAAWTTRAT TWVHWAHYTWTTTTWHAWWTWWAWWTTWWWTGT Direction: Forward Position #: 5 Overlap #: 20 Alignment: TWVHWWWYWTTTTTTTAWWTRWWAWTTWWWTGT ----WAHHTVTTYKAAAAWTTRAT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Reverse Complement Reverse Complement ACAWWWAAWWTWWAWWTHWAAAAWAMHTWHBWA TWTAATCTAWGAA ACATWTAATCTAWRAATHWAAAAWAMHTWHBWA Direction: Forward Position #: 4 Overlap #: 13 Alignment: ACAWWWAAWWTWWAWWTHWAAAAWAMHTWHBWA ---TWTAATCTAWGAA----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 6 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 TFM3 Reverse Complement Original Motif WWTAKTTCDKAATT WWHTTTTTCABAAWTTWA TWAWWTWKTTCWKAATTW Direction: Backward Position #: 4 Overlap #: 14 Alignment: -WWTAKTTCDKAATT--- WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Original Motif WAATTRWGAARWAWWTWA ATKAAWTTTTRMAABAHHTW ATKAWAWTTDDVAADAAWWWWA Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----WAATTRWGAARWAWWTWA ATKAAWTTTTRMAABAHHTW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Original Motif ATKAWAWTTDDVAADAAWWWWA HDWVAAAHAAAAAMAAAMWWWHBWA WHWDAAWTWAAVAAAAAMWWWWBWA Direction: Forward Position #: 1 Overlap #: 22 Alignment: ATKAWAWTTDDVAADAAWWWWA--- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif TWVWWWWYTTTTTBTTWAWTTDWHW WTKTTTTTHWTTTTTTBT TWVWWWWBTTTTTDTTTWTTTBWHW Direction: Forward Position #: 6 Overlap #: 18 Alignment: TWVWWWWYTTTTTBTTWAWTTDWHW -----WTKTTTTTHWTTTTTTBT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement TWVWWWWBTTTTTDTTTWTTTBWHW AAATTKTATTTAWT TWAAATTKTWTTTAWTTWTTTBWHW Direction: Forward Position #: 3 Overlap #: 14 Alignment: TWVWWWWBTTTTTDTTTWTTTBWHW --AAATTKTATTTAWT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Original Motif WHWVAAAWAAWTAAAWARAATTTWA AAATRWTAAAATCA WHWVAAATAATWAAATMAAATTTWA Direction: Forward Position #: 5 Overlap #: 14 Alignment: WHWVAAAWAAWTAAAWARAATTTWA ----AAATRWTAAAATCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif TWAAATTTRATTTWATTATTTBWHW AATHATATWTHAAA TWAAATTWDATTTHAWAATTTBWHW Direction: Forward Position #: 4 Overlap #: 14 Alignment: TWAAATTTRATTTWATTATTTBWHW ---AATHATATWTHAAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Original Motif WHWVAAATTWTHAAATDWAATTTWA AWAAAWTWAAASWA WHWVAAWWWAWWAAAWVWAATTTWA Direction: Forward Position #: 6 Overlap #: 14 Alignment: WHWVAAATTWTHAAATDWAATTTWA -----AWAAAWTWAAASWA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Original Motif Reverse Complement WHWVAAWWWAWWAAAWVWAATTTWA TWTAATCTAWGAA WTWTAATMTAWGAAAWVWAATTTWA Direction: Forward Position #: 2 Overlap #: 13 Alignment: WHWVAAWWWAWWAAAWVWAATTTWA -TWTAATCTAWGAA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Reverse Complement Reverse Complement TWAAATTWVWTTTCWTARATTAWAW WHTATTATTTDH TWAAWDTAHTWTTYWTARATTAWAW Direction: Forward Position #: 5 Overlap #: 12 Alignment: TWAAATTWVWTTTCWTARATTAWAW ----WHTATTATTTDH--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 7 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 csGCCCCGCCCCsc Original Motif Original Motif CSKCCCCGCCCCSY HVGCCCCGCCCCBB CSGCCCCGCCCCSB Direction: Forward Position #: 1 Overlap #: 14 Alignment: CSKCCCCGCCCCSY HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Reverse Complement VSGGGGCGGGGCSG BBGGGGCGGGGCGGB VSGGGGSGSGGSGSGGB Direction: Forward Position #: 3 Overlap #: 12 Alignment: VSGGGGCGGGGCSG--- --BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif BCCSCSCCSCSCCCCSB CYYCBBCYYYTCCHCCTYYY BCCCCSCCSCBCCYCCHCCTYYY Direction: Forward Position #: 4 Overlap #: 14 Alignment: BCCSCSCCSCSCCCCSB------ ---CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Original Motif KKKAGGDGGKGGBGSGGSGGGGB DGVBCABTGDWGCGKRRCSR DGDKBABKGDDGSGKGVSGDGGGGB Direction: Forward Position #: 3 Overlap #: 18 Alignment: --KKKAGGDGGKGGBGSGGSGGGGB DGVBCABTGDWGCGKRRCSR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Reverse Complement BCCCCHCSVCRCSCHHCYBTBYHCD CHCCBCCKMCTCCKCM BCCCHCCBSCDCSYCCBCCTBYHCD Direction: Forward Position #: 4 Overlap #: 16 Alignment: BCCCCHCSVCRCSCHHCYBTBYHCD ---CHCCBCCKMCTCCKCM------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Original Motif HGDKBAGGVGGMSGHGSBGGDGGGB GGMGGRGGCGGVGC HGDGGVGGRGGCGGVGSBGGDGGGB Direction: Forward Position #: 4 Overlap #: 14 Alignment: HGDKBAGGVGGMSGHGSBGGDGGGB ---GGMGGRGGCGGVGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Original Motif BCCCHCCBSCVCCGCCKCCBCCHCD BBVGCCBVGGCCTV BBVSCCBMGGCCYSGCCKCCBCCHCD Direction: Forward Position #: 2 Overlap #: 13 Alignment: -BCCCHCCBSCVCCGCCKCCBCCHCD BBVGCCBVGGCCTV------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Reverse Complement Original Motif HGDGGVGGRGGCSMGGCCRBGGSVBB SGGTCACGTGACCS BGGKSASGTGRCSVGGCCRBGGSVBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: HGDGGVGGRGGCSMGGCCRBGGSVBB SGGTCACGTGACCS------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Reverse Complement BBVSCCBMGGCCVSGKCACSTSRCCB CCCCCTTGGGCCCC CCCCCYHVGGCCVCGKCACSTSRCCB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBVSCCBMGGCCVSGKCACSTSRCCB CCCCCTTGGGCCCC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Original Motif CCCCCYHVGGCCVCGKCACSTSRCCB CGGVGCCGCVGC CCCCCYGGVGCCGCGGCACSTSRCCB Direction: Forward Position #: 6 Overlap #: 12 Alignment: CCCCCYHVGGCCVCGKCACSTSRCCB -----CGGVGCCGCVGC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 8 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Motif 3 Reverse Complement Reverse Complement TGATTTTAWKATTT TWSTTTWAWTTTWT TGATTTTAWTWTTT Direction: Backward Position #: 1 Overlap #: 14 Alignment: TGATTTTAWKATTT TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif TGATTTTAWTWTTT WTKTTTTTHWTTTTTTBT TGWTTTTWTTDTTTTTTTBT Direction: Forward Position #: 3 Overlap #: 12 Alignment: TGATTTTAWTWTTT------ --WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Reverse Complement TGWTTTTWTTDTTTTTTTBT AAATTKTATTTAWT WAATTTTATTTWWTTTTTBT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGWTTTTWTTDTTTTTTTBT AAATTKTATTTAWT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Reverse Complement Original Motif ABAAAAAWWAAATAAAATTW HDWVAAAHAAAAAMAAAMWWWHBWA WDAAAAAWWAAAWAAAAHWWWHBWA Direction: Forward Position #: 1 Overlap #: 20 Alignment: ABAAAAAWWAAATAAAATTW----- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif WDAAAAAWWAAAWAAAAHWWWHBWA ATKAAWTTTTRMAABAHHTW AHDAAAWTWWAAAADAAHTWWHBWA Direction: Forward Position #: 1 Overlap #: 20 Alignment: WDAAAAAWWAAAWAAAAHWWWHBWA ATKAAWTTTTRMAABAHHTW----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Original Motif AHDAAAWTWWAAAADAAHTWWHBWA AATTYDGAARTAWW AHDAAAATTHARAARWAWWWWHBWA Direction: Forward Position #: 6 Overlap #: 14 Alignment: AHDAAAWTWWAAAADAAHTWWHBWA -----AATTYDGAARTAWW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif TWVHWWWWTWKTTMTHAATTTTDHT AATHATATWTHAAA TWVHWAWTTWTWTHTHAAWTTTDHT Direction: Forward Position #: 6 Overlap #: 14 Alignment: TWVHWWWWTWKTTMTHAATTTTDHT -----AATHATATWTHAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Reverse Complement TWVHWAWTTWTWTHTHAAWTTTDHT TTTTATTGTYAT GTYATTTTWATTTWVHWAWTTWTWTHTHAA Direction: Backward Position #: 6 Overlap #: 7 Alignment: TWVHWAWTTWTWTHTHAAWTTTDHT----- ------------------TTTTATTGTYAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 9 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 TFM13 Reverse Complement Reverse Complement TTTDAWATATHATT WAHHTVTTYKAAAAWTTRAT TTTKAAAWWTWRWTWAHHTV Direction: Backward Position #: 1 Overlap #: 14 Alignment: ------TTTDAWATATHATT WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif BAHHTWAWKWAWWTTTYAAA WWHTTTTTCABAAWTTWA WAHTTWWWYWHWAWTTHAAA Direction: Forward Position #: 1 Overlap #: 18 Alignment: BAHHTWAWKWAWWTTTYAAA WWHTTTTTCABAAWTTWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif WAHTTWWWYWHWAWTTHAAA WTKTTTTTHWTTTTTTBT WWDTTTWTHWTWWTTTHWAA Direction: Forward Position #: 1 Overlap #: 18 Alignment: WAHTTWWWYWHWAWTTHAAA WTKTTTTTHWTTTTTTBT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Original Motif TTWHAAAWWAWDAWAAADWW HDWVAAAHAAAAAMAAAMWWWHBWA TTWHAAADAAWDAAAAAVAAAMWWWHBWA Direction: Forward Position #: 5 Overlap #: 16 Alignment: TTWHAAAWWAWDAWAAADWW--------- ----HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif TTWHAAADAAWDAAAAAVAAAMWWWHBWA AWAAAWTWAAASWA TTWHAAAHAAADWAAAAVWAAMWWWHBWA Direction: Forward Position #: 7 Overlap #: 14 Alignment: TTWHAAADAAWDAAAAAVAAAMWWWHBWA ------AWAAAWTWAAASWA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Reverse Complement TWVHWWWYTTWBTTTTWDTTTHTTTHWAA WWTAKTTCDKAATT TWVHWWWTTWTTTYTTAATTTHTTTHWAA Direction: Forward Position #: 7 Overlap #: 14 Alignment: TWVHWWWYTTWBTTTTWDTTTHTTTHWAA ------WWTAKTTCDKAATT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Original Motif TTWHAAAHAAATTAAKAAAWAAWWWHBWA AWTAAATAYAATTT ATTAAATAYAAWTTAAKAAAWAAWWWHBWA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TTWHAAAHAAATTAAKAAAWAAWWWHBWA AWTAAATAYAATTT---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Reverse Complement Reverse Complement TWVHWWWTTWTTTYTTAAWTTMTATTTAAT TWTAATCTAWGAA TWVHWTWTWATYTAWGAAWTTMTATTTAAT Direction: Forward Position #: 6 Overlap #: 13 Alignment: TWVHWWWTTWTTTYTTAAWTTMTATTTAAT -----TWTAATCTAWGAA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Reverse Complement TWVHWTWTWATYTAWGAAWTTMTATTTAAT TGATTTTAWKATTT TKATTTTATDATTTAWGAAWTTMTATTTAAT Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TWVHWTWTWATYTAWGAAWTTMTATTTAAT TGATTTTAWKATTT----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Reverse Complement Reverse Complement ATTAAATAYAAWTTCWTAAATDATAAAATYA DDTATTATTTDH ATTAAAWATAWTWTYWHAAATDATAAAATYA Direction: Forward Position #: 7 Overlap #: 12 Alignment: ATTAAATAYAAWTTCWTAAATDATAAAATYA ------DDTATTATTTDH------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 10 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Motif 11 Reverse Complement Original Motif AWTTATGAAA ATTTWATGAAA WTTTATGAAAA Direction: Backward Position #: 1 Overlap #: 10 Alignment: -AWTTATGAAA ATTTWATGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Original Motif WTTTATGAAAA AATTYDGAARTAWW WWTTHTGAAAAAWW Direction: Forward Position #: 1 Overlap #: 11 Alignment: WTTTATGAAAA--- AATTYDGAARTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif WWTTHTGAAAAAWW AAATRWTAAAATCA AAWTDWKAAAAWMA Direction: Forward Position #: 1 Overlap #: 14 Alignment: WWTTHTGAAAAAWW AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif TRWTTTTRWBAWTT WWHTTTTTCABAAWTTWA TRWTTTTDWTMWTWAWTTWA Direction: Forward Position #: 3 Overlap #: 12 Alignment: TRWTTTTRWBAWTT------ --WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif TWAAWTWAWYAWHAAAAWMA ATKAAWTTTTRMAABAHHTW TWAAWTWAWWWTYWAAAAHAHHTW Direction: Forward Position #: 5 Overlap #: 16 Alignment: TWAAWTWAWYAWHAAAAWMA---- ----ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Combined Motif Reverse Complement Reverse Complement WAHHTDTTTTWMAWWWTWAWTTWA ATTCATTTTT WATTYATTTTTMAWWWTWAWTTWA Direction: Forward Position #: 2 Overlap #: 10 Alignment: WAHHTDTTTTWMAWWWTWAWTTWA -ATTCATTTTT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Reverse Complement WATTYATTTTTMAWWWTWAWTTWA AAATTKTATTTAWT AAWTTDTWTTTAWTWWTWAWTTWA Direction: Forward Position #: 1 Overlap #: 14 Alignment: WATTYATTTTTMAWWWTWAWTTWA AAATTKTATTTAWT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement TWAAWTWAWWAWTAAAWAHAAWTT TTTDAWATATHATT TWAAWTTWDAAWTAWAAWTAAWTT Direction: Forward Position #: 6 Overlap #: 14 Alignment: TWAAWTWAWWAWTAAAWAHAAWTT -----TTTDAWATATHATT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Reverse Complement Reverse Complement AAWTTAWTTWTAWTTDWAAWTTWA TTTTATTGTYAT AWTTTATTKTTATTTDWAAWTTWA Direction: Forward Position #: 2 Overlap #: 12 Alignment: AAWTTAWTTWTAWTTDWAAWTTWA -TTTTATTGTYAT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Reverse Complement AWTTTATTKTTATTTDWAAWTTWA TWSTTTWAWTTTWT AWTTTWWBTTTWWWTWWAWWTTWA Direction: Forward Position #: 6 Overlap #: 14 Alignment: AWTTTATTKTTATTTDWAAWTTWA -----TWSTTTWAWTTTWT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 11 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Motif 5 Reverse Complement Original Motif TTTCATWAAAT AWTAAATAYAATTT TTWWMWWHAAWTAW Direction: Backward Position #: 2 Overlap #: 11 Alignment: --TTTCATWAAAT- AWTAAATAYAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Reverse Complement TTWWMWWHAAWTAW TGATTTTAWKATTT TTTDATTTWAWTATTT Direction: Forward Position #: 3 Overlap #: 12 Alignment: TTWWMWWHAAWTAW-- --TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif AAATAWTWAAATHAAA WWHTTTTTCABAAWTTWA AAATAWTWWWWYHHAAWTTWA Direction: Forward Position #: 4 Overlap #: 13 Alignment: AAATAWTWAAATHAAA----- ---WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Combined Motif Original Motif Reverse Complement AAATAWTWWWWYHHAAWTTWA TTATWAWCTAA AAATTATWAWCTAAAAWTTWA Direction: Forward Position #: 4 Overlap #: 11 Alignment: AAATAWTWWWWYHHAAWTTWA ---TTATWAWCTAA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Reverse Complement TWAAWTTTTAGWTWATAATTT TTTTATTGTYAT TTTWATTKTYATWTWATAATTT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -TWAAWTTTTAGWTWATAATTT TTTTATTGTYAT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif TTTWATTKTYATWTWATAATTT AATHATATWTHAAA TTTWAWTDWTATWTHAWAATTT Direction: Forward Position #: 5 Overlap #: 14 Alignment: TTTWATTKTYATWTWATAATTT ----AATHATATWTHAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Reverse Complement Original Motif AAATTWTHAWATAWDAWTWAAA AATTYDGAARTAWW AAWTTWKAAAWWAWDAWTWAAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAATTWTHAWATAWDAWTWAAA AATTYDGAARTAWW-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Original Motif Reverse Complement AAWTTWKAAAWWAWDAWTWAAA TWTAATCTAWGAA AAWTTWTAATCTAWGAATWAAA Direction: Forward Position #: 5 Overlap #: 13 Alignment: AAWTTWKAAAWWAWDAWTWAAA ----TWTAATCTAWGAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Reverse Complement Reverse Complement TTTWATTCWTAGATTAWAAWTT TWSTTTWAWTTTWT TTHTWTTMWTWKATTAWAAWTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTTWATTCWTAGATTAWAAWTT TWSTTTWAWTTTWT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif AAWTTWTAATRWAWYAAWAHAA ATKAAWTTTTRMAABAHHTW AAWTWTTAAWWTWWDAAAWAAATW Direction: Forward Position #: 5 Overlap #: 18 Alignment: AAWTTWTAATRWAWYAAWAHAA-- ----ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 12 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 Motif 15 Reverse Complement Reverse Complement TTTGTTTT TTTTATTGTYAT YATTTTRTTKTT Direction: Backward Position #: 4 Overlap #: 8 Alignment: -TTTGTTTT--- TTTTATTGTYAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 17 Reverse Complement Original Motif AAYAAKAAAATK AAAAATGAAT AAHAATRAAWTK Direction: Forward Position #: 1 Overlap #: 10 Alignment: AAYAAKAAAATK AAAAATGAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement AAHAATRAAWTK AAATTKTATTTAWT AAAAATDDWATTTAWT Direction: Forward Position #: 3 Overlap #: 10 Alignment: AAHAATRAAWTK---- --AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Original Motif AAAAATDDWATTTAWT ACAAWTRATTTTGA AMAAATDATWTTKAWT Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAAAATDDWATTTAWT ACAAWTRATTTTGA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Original Motif Original Motif AMAAATDATWTTKAWT AWAAATAA AHAAATAATWTTKAWT Direction: Forward Position #: 1 Overlap #: 8 Alignment: AMAAATDATWTTKAWT AWAAATAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Reverse Complement AWTYAAWATTATTTHT TWVHWWWYTTTYTTTTTHTTTVWBH AWTYAAWWTTWTTTYTTTTTHTTTVWBH Direction: Forward Position #: 4 Overlap #: 13 Alignment: AWTYAAWATTATTTHT------------ ---TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Original Motif HDWVAAAHAAAAAMAAAWAAWWTTMAWT AWAAAWTWAAASWA HDWVAAADAAWAAAAAWWAAWWTTMAWT Direction: Forward Position #: 5 Overlap #: 14 Alignment: HDWVAAAHAAAAAMAAAWAAWWTTMAWT ----AWAAAWTWAAASWA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif AWTYAAWWTTWWTTTTTWTTDTTTVWBH WTKTTTTTHWTTTTTTBT AWTYAAWWTTTTTTHTTTTTTTHTVWBH Direction: Forward Position #: 7 Overlap #: 18 Alignment: AWTYAAWWTTWWTTTTTWTTDTTTVWBH ------WTKTTTTTHWTTTTTTBT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Reverse Complement AWTYAAWWTTTTTTHTTTTTTTHTVWBH TGATTTTAWKATTT TRATTWWAWKWTTTTHTTTTTTTHTVWBH Direction: Forward Position #: 2 Overlap #: 13 Alignment: -AWTYAAWWTTTTTTHTTTTTTTHTVWBH TGATTTTAWKATTT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 18 Original Motif Reverse Complement TRATTWWAWKWTTTTHTTTTTTTHTVWBH TTATWAWCTAA TDATTAWMTAATTTTHTTTTTTTHTVWBH Direction: Forward Position #: 1 Overlap #: 11 Alignment: TRATTWWAWKWTTTTHTTTTTTTHTVWBH TTATWAWCTAA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 13 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Motif 20 Reverse Complement Reverse Complement AAATCTTT AAATCTTTYAA AAATCTTTYAA Direction: Forward Position #: 1 Overlap #: 8 Alignment: AAATCTTT--- AAATCTTTYAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Reverse Complement Original Motif TTKAAAGATTT ACAAWTRATTTTGA TWBAAAKAWTTTTGA Direction: Forward Position #: 2 Overlap #: 10 Alignment: TTKAAAGATTT---- -ACAAWTRATTTTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif TWBAAAKAWTTTTGA AAATRWTAAAATCA CAAHAWADWAWWWTTWB Direction: Backward Position #: 3 Overlap #: 12 Alignment: TWBAAAKAWTTTTGA-- ---AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Original Motif BWAAWWWTWDTWTBTTG AWTAAATAYAATTT ADTAAATATAATTTBTTG Direction: Forward Position #: 2 Overlap #: 13 Alignment: -BWAAWWWTWDTWTBTTG AWTAAATAYAATTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Original Motif CAAHAAATTATATTTADT TTCWTAGATTAWA TYMWTARATTAWATTTADT Direction: Forward Position #: 2 Overlap #: 12 Alignment: -CAAHAAATTATATTTADT TTCWTAGATTAWA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Reverse Complement Original Motif ADTAAATWTAATMTAWYKA AAAAWTTRCWT AAWAAWTAYAWTMTAWYKA Direction: Forward Position #: 1 Overlap #: 11 Alignment: ADTAAATWTAATMTAWYKA AAAAWTTRCWT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 17 Original Motif Original Motif AAWAAWTAYAWTMTAWYKA AAAAATGAAT AAAAATKAAWWTMTAWYKA Direction: Forward Position #: 1 Overlap #: 10 Alignment: AAWAAWTAYAWTMTAWYKA AAAAATGAAT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Original Motif Reverse Complement AAAAATKAAWWTMTAWYKA HCAGAATGTHD HMARAATGWHWWTMTAWYKA Direction: Forward Position #: 2 Overlap #: 10 Alignment: -AAAAATKAAWWTMTAWYKA HCAGAATGTHD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Original Motif Original Motif HMARAATGWHWWTMTAWYKA AWAAATAA AWAAAWAWGWHWWTMTAWYKA Direction: Forward Position #: 2 Overlap #: 7 Alignment: -HMARAATGWHWWTMTAWYKA AWAAATAA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Reverse Complement Original Motif TYKWTARAWWHWCWTWTTTWT HDAAATAATAHW TYKWHAAAWWAAYATWTTTWT Direction: Forward Position #: 5 Overlap #: 12 Alignment: TYKWTARAWWHWCWTWTTTWT ----HDAAATAATAHW----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 14 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Motif 17 Reverse Complement Reverse Complement TTATTTWT ATTCATTTTT TYATTTTTAT Direction: Backward Position #: 1 Overlap #: 8 Alignment: --TTATTTWT ATTCATTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement TYATTTTTAT AAATTKTATTTAWT THAWTTTTATTTAWT Direction: Forward Position #: 2 Overlap #: 9 Alignment: TYATTTTTAT----- -AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Reverse Complement THAWTTTTATTTAWT TCAAAATKAWTTGT TCAAWWTTATTTRTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: THAWTTTTATTTAWT TCAAAATKAWTTGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Original Motif TCAAWWTTATTTRTT ATMACAATAAAA ATMAMAATWAWWTRTT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -TCAAWWTTATTTRTT ATMACAATAAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Reverse Complement ATMAMAATWAWWTRTT DDTATTATTTDH ATMAHWATWAWWTDWT Direction: Forward Position #: 4 Overlap #: 12 Alignment: ATMAMAATWAWWTRTT ---DDTATTATTTDH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tkAAATAATAtw Original Motif Original Motif ATMAHWATWAWWTDWT HDAAATAATAHW ATMAATAWTATWTDWT Direction: Forward Position #: 1 Overlap #: 12 Alignment: ATMAHWATWAWWTDWT HDAAATAATAHW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Reverse Complement AWDAWATAWTATTYAT ABAAAAAAWHAAAAARAW AWDADAWAWWAWTHAWAARAW Direction: Forward Position #: 4 Overlap #: 13 Alignment: AWDAWATAWTATTYAT----- ---ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif AWDADAWAWWAWTHAWAARAW AAATRWTAAAATCA AAAWRWTAAAATCAAWAARAW Direction: Forward Position #: 1 Overlap #: 14 Alignment: AWDADAWAWWAWTHAWAARAW AAATRWTAAAATCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Combined Motif Original Motif Reverse Complement AAAWRWTAAAATCAAWAARAW TTATWAWCTAA AAATTATAAWMTMAAWAARAW Direction: Forward Position #: 4 Overlap #: 11 Alignment: AAAWRWTAAAATCAAWAARAW ---TTATWAWCTAA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 12 Reverse Complement Reverse Complement WTKTTWTTYARWTTATAATTT TTTGTTTT TTTKTTTTYARWTTATAATTT Direction: Forward Position #: 1 Overlap #: 8 Alignment: WTKTTWTTYARWTTATAATTT TTTGTTTT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 15 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Motif 8 Reverse Complement Reverse Complement TTTTATTGTYAT TGATTTTAWKATTT TTTKWTWTTRTBAT Direction: Backward Position #: 3 Overlap #: 12 Alignment: TTTTATTGTYAT-- TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Reverse Complement TTTKWTWTTRTBAT TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWTTTTTTHTTDTTATTTVWBH Direction: Forward Position #: 6 Overlap #: 14 Alignment: -----TTTKWTWTTRTBAT------ TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Original Motif HDWVAAATAADAAHAAAAAAWHBWA AWTAAATAYAATTT HAWTAAATAHAAWTWAAAAAWHBWA Direction: Forward Position #: 2 Overlap #: 14 Alignment: HDWVAAATAADAAHAAAAAAWHBWA -AWTAAATAYAATTT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement TWVHWTTTTTWAWTTHTATTTAWTH TWSTTTWAWTTTWT TWVHWTWBTTTWWTTWTATTTAWTH Direction: Forward Position #: 6 Overlap #: 14 Alignment: TWVHWTTTTTWAWTTHTATTTAWTH -----TWSTTTWAWTTTWT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Reverse Complement Reverse Complement HAWTAAATAWAAWWAAAVWAWHBWA ABAAAAAAWHAAAAARAW ABAAAWWAAAWAAAADWWAAVWAWHBWA Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---HAWTAAATAWAAWWAAAVWAWHBWA ABAAAAAAWHAAAAARAW---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Reverse Complement Reverse Complement TWVHWTWBTTWWDTTTTWTTTWWTTTBT WWTAKTTCDKAATT TWTWKTTCTTAATTTTTWTTTWWTTTBT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TWVHWTWBTTWWDTTTTWTTTWWTTTBT WWTAKTTCDKAATT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement ABAAAWWAAAWAAAAATTAAGAARWAWA TTTDAWATATHATT ABAAWWTAAAAWAWAATTAAGAARWAWA Direction: Forward Position #: 5 Overlap #: 14 Alignment: ABAAAWWAAAWAAAAATTAAGAARWAWA ----TTTDAWATATHATT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif TWTWKTTCTTAATTWTWTTTTAWWTTBT WWHTTTTTCABAAWTTWA TWWWDTTYTTMATWAWWTWWTAWWTTBT Direction: Forward Position #: 3 Overlap #: 18 Alignment: TWTWKTTCTTAATTWTWTTTTAWWTTBT --WWHTTTTTCABAAWTTWA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Original Motif ABAAWWTAWWAWWTWATRAAMAADWWWA ACAAWTRATTTTGA TTTTGAACWAWTRAABAAWWTAWWAWWTWATRAA Direction: Backward Position #: 7 Overlap #: 8 Alignment: ABAAWWTAWWAWWTWATRAAMAADWWWA------ --------------------ACAAWTRATTTTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 16 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Motif 5 Reverse Complement Original Motif TCAAAATKAWTTGT AWTAAATAYAATTT WHWAAATDHAWTKT Direction: Backward Position #: 1 Overlap #: 14 Alignment: TCAAAATKAWTTGT AWTAAATAYAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif AYAWTHDATTTWDW ATKAAWTTTTRMAABAHHTW AYATTWWATTTWRWAABAHHTW Direction: Forward Position #: 3 Overlap #: 12 Alignment: AYAWTHDATTTWDW-------- --ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement WAHHTVTTWMWAAATWWAATKT TTTDAWATATHATT WAHHTHTTAMAWAWWAWWATKT Direction: Forward Position #: 5 Overlap #: 14 Alignment: WAHHTVTTWMWAAATWWAATKT ----TTTDAWATATHATT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Reverse Complement Reverse Complement AYATWWTWWTWTYTAAHAHHTW WHTATTATTTDH AYATWATATTATTTDAHAHHTW Direction: Forward Position #: 5 Overlap #: 12 Alignment: AYATWWTWWTWTYTAAHAHHTW ----WHTATTATTTDH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Reverse Complement AYATWATATTATTTDAHAHHTW DDTATTATTTDH AYATWHTATTATTTDHHAHHTW Direction: Forward Position #: 5 Overlap #: 12 Alignment: AYATWATATTATTTDAHAHHTW ----DDTATTATTTDH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Reverse Complement AYATWHTATTATTTDHHAHHTW TGATTTTAWKATTT WBATTTTAWTATTTDHHAHHTW Direction: Forward Position #: 1 Overlap #: 14 Alignment: AYATWHTATTATTTDHHAHHTW TGATTTTAWKATTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Reverse Complement WBATTTTAWTATTTDHHAHHTW TTTTATTGTYAT TTWTWTTRTTATTTDHHAHHTW Direction: Forward Position #: 1 Overlap #: 12 Alignment: WBATTTTAWTATTTDHHAHHTW TTTTATTGTYAT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Original Motif WAHHTHHDAAATAAMAAWAWAA AATTYDGAARTAWW WAWATTYDRAADHAAAAWAWAA Direction: Forward Position #: 3 Overlap #: 14 Alignment: WAHHTHHDAAATAAMAAWAWAA --AATTYDGAARTAWW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Reverse Complement Reverse Complement TTWTWTTTTHDTTMDMAATWTW AWGKAAWTTTT TTWTATKTWWWTTTTMAATWTW Direction: Forward Position #: 5 Overlap #: 11 Alignment: TTWTWTTTTHDTTMDMAATWTW ----AWGKAAWTTTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Original Motif WAWATTYAAAAWWWARATAWAA DHACATTCTGH DWACATTCWDAAWWWARATAWAA Direction: Forward Position #: 2 Overlap #: 10 Alignment: -WAWATTYAAAAWWWARATAWAA DHACATTCTGH------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 17 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Motif 16 Reverse Complement Original Motif ATTCATTTTT ACAAWTRATTTTGA TGAMWWHWDWTTTA Direction: Backward Position #: 4 Overlap #: 10 Alignment: -ATTCATTTTT--- ACAAWTRATTTTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Original Motif Reverse Complement TGAMWWHWDWTTTA TTTTATTGTYAT TGAMWWHTTTTWTWGTYAT Direction: Forward Position #: 8 Overlap #: 7 Alignment: TGAMWWHWDWTTTA----- -------TTTTATTGTYAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Original Motif ATKACWAWAAAADWWYTCA AWTAAATAYAATTT AATDAMTAHAAWWTWWYTCA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -ATKACWAWAAAADWWYTCA AWTAAATAYAATTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Original Motif Reverse Complement AATDAMTAHAAWWTWWYTCA AWTTATGAAA AWTTAHKAAAAWWTWWYTCA Direction: Forward Position #: 1 Overlap #: 10 Alignment: AATDAMTAHAAWWTWWYTCA AWTTATGAAA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Reverse Complement Reverse Complement TGAKWWAWWTTTTYHTAAWT AWGKAAWTTTT WDRKAWWWTTTTTYHTAAWT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TGAKWWAWWTTTTYHTAAWT AWGKAAWTTTT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Reverse Complement Original Motif AWTTAHKAAAAAWWWTRKHW AAATRWTAAAATCA AAWTAWTAAAAWMAWTRKHW Direction: Forward Position #: 1 Overlap #: 14 Alignment: AWTTAHKAAAAAWWWTRKHW AAATRWTAAAATCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Reverse Complement WDRKAWTRWTTTTAWTAWTT HCAGAATGTHD WBAGAATGTTTTTAWTAWTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: WDRKAWTRWTTTTAWTAWTT HCAGAATGTHD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Reverse Complement WBAGAATGTTTTTAWTAWTT WAHHTVTTYKAAAAWTTRAT WBAGWATDTHTTTDWHAWTTTRAT Direction: Forward Position #: 5 Overlap #: 16 Alignment: WBAGAATGTTTTTAWTAWTT---- ----WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Original Motif ATKAAAWTHWDAAAHAHATWCTBW AWAAAWTWAAASWA ATKAAAWWWAWWAAAAVWWWCTBW Direction: Forward Position #: 6 Overlap #: 14 Alignment: ATKAAAWTHWDAAAHAHATWCTBW -----AWAAAWTWAAASWA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement ATKAAAWWWAWWAAAAVWWWCTBW ABAAAAAAWHAAAAARAW ATDAAAWAWHAAAAAAHWWWCTBW Direction: Forward Position #: 1 Overlap #: 18 Alignment: ATKAAAWWWAWWAAAAVWWWCTBW ABAAAAAAWHAAAAARAW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 18 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Motif 6 Reverse Complement Original Motif TTATWAWCTAA AATTYDGAARTAWW AWTWTWRAMDAAWW Direction: Forward Position #: 2 Overlap #: 11 Alignment: -TTATWAWCTAA-- AATTYDGAARTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif AWTWTWRAMDAAWW AAATRWTAAAATCA AAATDTTAAAATMAW Direction: Forward Position #: 2 Overlap #: 13 Alignment: -AWTWTWRAMDAAWW AAATRWTAAAATCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Original Motif AAATDTTAAAATMAW ATTTWATGAAA AWWTWATRAAATMAW Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAATDTTAAAATMAW ATTTWATGAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tkAAATAATAtw Reverse Complement Reverse Complement WTYATTTMATWAWWT WHTATTATTTDH WWTATTWHWTDAWWT Direction: Forward Position #: 1 Overlap #: 12 Alignment: WTYATTTMATWAWWT WHTATTATTTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Reverse Complement WWTATTWHWTDAWWT DDTATTATTTDH WHTATTATWTDAWWT Direction: Forward Position #: 1 Overlap #: 12 Alignment: WWTATTWHWTDAWWT DDTATTATTTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif WHTATTATWTDAWWT WWHTTTTTCABAAWTTWA WHTATTWTTTHAHAWWTTWA Direction: Forward Position #: 3 Overlap #: 13 Alignment: WHTATTATWTDAWWT----- --WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement TWAAWWTHTDAAAWAATAHW TTTDAWATATHATT TWAATTTDADAWAWAATWHW Direction: Forward Position #: 5 Overlap #: 14 Alignment: TWAAWWTHTDAAAWAATAHW ----TTTDAWATATHATT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Reverse Complement TWAATTTDADAWAWAATWHW WAHHTVTTYKAAAAWTTRAT WAHTTAHTTTWAAAWWWAATWHW Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---TWAATTTDADAWAWAATWHW WAHHTVTTYKAAAAWTTRAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Original Motif Reverse Complement WAHTTAHTTTWAAAWWWAATWHW TTTTATTGTYAT WAHTTAHTTTWAAAWWWAATTTTATTGTYAT Direction: Forward Position #: 20 Overlap #: 4 Alignment: WAHTTAHTTTWAAAWWWAATWHW-------- -------------------TTTTATTGTYAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Original Motif ATKACAATAAAATTWWWTTTWAAAHTAAHTW TTCWTAGATTAWA TTMTTASAWTAWAATTWWWTTTWAAAHTAAHTW Direction: Forward Position #: 3 Overlap #: 11 Alignment: --ATKACAATAAAATTWWWTTTWAAAHTAAHTW TTCWTAGATTAWA-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 19 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Motif 9 Original Motif Original Motif TTCWTAGATTAWA AATHATATWTHAAA AWTCWTAKATTAAA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TTCWTAGATTAWA AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Original Motif TTTAATYTAWGAWT ATKAAWTTTTRMAABAHHTW WTTAAWTTWTRAAWBAHHTW Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTTAATYTAWGAWT------ ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Reverse Complement Reverse Complement WAHHTVWTTMAWAAWTTAAW TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWWYTTTHTTHWTAWTTHWHW Direction: Forward Position #: 6 Overlap #: 20 Alignment: -----WAHHTVWTTMAWAAWTTAAW TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TWVHWWWYTTTHTTHWTAWTTHWHW WWHTTTTTCABAAWTTWA TWVHWWWTTTTWYWHAWATTTAWHW Direction: Forward Position #: 5 Overlap #: 18 Alignment: TWVHWWWYTTTHTTHWTAWTTHWHW ----WWHTTTTTCABAAWTTWA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Reverse Complement TWVHWWWTTTTWYWHAWATTTAWHW WWTAKTTCDKAATT TWTWTTTYTKAATWHAWATTTAWHW Direction: Forward Position #: 1 Overlap #: 14 Alignment: TWVHWWWTTTTWYWHAWATTTAWHW WWTAKTTCDKAATT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Reverse Complement Original Motif WHWTAAATWTHWATTRAKAAAWAWA AAATRWTAAAATCA AAWTRWTAAAAWMAWHWTAAATWTH Direction: Backward Position #: 1 Overlap #: 14 Alignment: WHWTAAATWTHWATTRAKAAAWAWA -----------AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 20 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 20 Motif 8 Reverse Complement Original Motif AAATCTTTYAA AAATRWTAAAATCA AAAWAATMWWWTMA Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---AAATCTTTYAA AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Original Motif TYAWWWYATTWTTT TTCWTAGATTAWA TTMWTABATTATWT Direction: Forward Position #: 1 Overlap #: 13 Alignment: TYAWWWYATTWTTT TTCWTAGATTAWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Original Motif TTMWTABATTATWT AWTAAATAYAATTT TTAWTADATWHWATTT Direction: Forward Position #: 3 Overlap #: 12 Alignment: TTMWTABATTATWT-- --AWTAAATAYAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Original Motif AAATWHWATBTAWTAA ACAAWTRATTTTGA AMAWWTDATTTWDWAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAATWHWATBTAWTAA ACAAWTRATTTTGA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif AMAWWTDATTTWDWAA AATHATATWTHAAA AMAAWTDATWTWTHAAA Direction: Forward Position #: 4 Overlap #: 13 Alignment: AMAWWTDATTTWDWAA- ---AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif AMAAWTDATWTWTHAAA ATKAAWTTTTRMAABAHHTW AMAAWTWAWWTTTDAAABAHHTW Direction: Forward Position #: 4 Overlap #: 14 Alignment: AMAAWTDATWTWTHAAA------ ---ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Original Motif Original Motif AMAAWTWAWWTTTDAAABAHHTW AAAAWTTRCWT AAAAWTTAYWTTTDAAABAHHTW Direction: Forward Position #: 1 Overlap #: 11 Alignment: AMAAWTWAWWTTTDAAABAHHTW AAAAWTTRCWT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif AAAAWTTAYWTTTDAAABAHHTW WWHTTTTTCABAAWTTWA AAAWWTTWTWTYWDAAATWWATW Direction: Forward Position #: 4 Overlap #: 18 Alignment: AAAAWTTAYWTTTDAAABAHHTW ---WWHTTTTTCABAAWTTWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tkAAATAATAtw Reverse Complement Reverse Complement WATWWATTTDWKAWAWAAWWTTT WHTATTATTTDH WATATWWTTDWDAWAWAAWWTTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: WATWWATTTDWKAWAWAAWWTTT WHTATTATTTDH----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Reverse Complement AAAWWTTWTWTHWDAAWWATATW WWTAKTTCDKAATT AAAWWWTWTTTCWDAATWATATW Direction: Forward Position #: 5 Overlap #: 14 Alignment: AAAWWTTWTWTHWDAAWWATATW ----WWTAKTTCDKAATT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 21 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Motif 15 Reverse Complement Reverse Complement TTTTAT TTTTATTGTYAT TGTYATTTTTAT Direction: Backward Position #: 7 Overlap #: 6 Alignment: TTTTAT------ TTTTATTGTYAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Reverse Complement TGTYATTTTTAT TGATTTTAWKATTT TGTBATTTTWATATTT Direction: Forward Position #: 3 Overlap #: 10 Alignment: TGTYATTTTTAT---- --TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement TGTBATTTTWATATTT AAATTKTATTTAWT TGTDAWTTTTATWTWTT Direction: Forward Position #: 4 Overlap #: 13 Alignment: TGTBATTTTWATATTT- ---AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Combined Motif Reverse Complement Reverse Complement AAWAWATAAAAWTBACA TTTCATWAAAT AWTWHATWAAATTBACA Direction: Forward Position #: 2 Overlap #: 11 Alignment: AAWAWATAAAAWTBACA -TTTCATWAAAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Original Motif Reverse Complement AWTWHATWAAATTBACA AWTTATGAAA AWTTAWKAAAATTBACA Direction: Forward Position #: 1 Overlap #: 10 Alignment: AWTWHATWAAATTBACA AWTTATGAAA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Original Motif Original Motif AWTTAWKAAAATTBACA AWAAATAA AWWWATAAAAATTBACA Direction: Forward Position #: 1 Overlap #: 8 Alignment: AWTTAWKAAAATTBACA AWAAATAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 20 Original Motif Reverse Complement AWWWATAAAAATTBACA AAATCTTTYAA AAATMTTWHAATTBACA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AWWWATAAAAATTBACA AAATCTTTYAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Reverse Complement TGTDAATTHWAARATTT TWTAATCTAWGAA TDTAAWYTAWRAAATTT Direction: Forward Position #: 1 Overlap #: 13 Alignment: TGTDAATTHWAARATTT TWTAATCTAWGAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Reverse Complement Original Motif AAATTTMWTAKWTTAHA HDAAATAATADD AWAWWTMWTAKWTTAHA Direction: Forward Position #: 1 Overlap #: 12 Alignment: AAATTTMWTAKWTTAHA HDAAATAATADD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Original Motif TDTAAWRTAWYAWWTWT AWAAAWTWAAASWA TATAAADTAWWADWWWT Direction: Forward Position #: 2 Overlap #: 14 Alignment: TDTAAWRTAWYAWWTWT -AWAAAWTWAAASWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 22 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx cccGCCCCGCCCCsb Original Motif Original Motif BBVGCCBVGGCCTV BCCGCCCCGCCCCBB BBSGCCCCGSCCYBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBVGCCBVGGCCTV- BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement BBSGCCCCGSCCYBB CHCCBCCKMCTCCKCM BBCVCCBCSKCCTCCKCM Direction: Forward Position #: 3 Overlap #: 13 Alignment: BBSGCCCCGSCCYBB--- --CHCCBCCKMCTCCKCM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement RGRGGAGGYSGBGGVGBB MSGKKRCGCWDCABTGBBCD RGRVSRGGVCGCDDCRBBGBBCD Direction: Forward Position #: 4 Overlap #: 15 Alignment: RGRGGAGGYSGBGGVGBB----- ---MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement RGRVSRGGVCGCDDCRBBGBBCD KKKAGGDGGAKKMGBBGKMG RGRDBRGGDSGVKKHGBBGBHSD Direction: Forward Position #: 3 Overlap #: 20 Alignment: RGRVSRGGVCGCDDCRBBGBBCD --KKKAGGDGGAKKMGBBGKMG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Original Motif HSDBCVBCDYYVCSHCCKBHMCM HVGCCCCGCCCCBB HSDBCVGCCCCGCCCCBBBHMCM Direction: Forward Position #: 5 Overlap #: 14 Alignment: HSDBCVBCDYYVCSHCCKBHMCM ----HVGCCCCGCCCCBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Original Motif RGRDBVBGGGGCGGGGCVGBHSD GGGGCCCAAGGGGG GGGGSCBDVGGSGGGGCVGBHSD Direction: Forward Position #: 1 Overlap #: 14 Alignment: RGRDBVBGGGGCGGGGCVGBHSD GGGGCCCAAGGGGG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Reverse Complement Original Motif HSDBCVGCCCCSCCBDBGSCCCC CSKCCCCGCCCCSY HSKCCCSSCCCCCYBDBGSCCCC Direction: Forward Position #: 1 Overlap #: 14 Alignment: HSDBCVGCCCCSCCBDBGSCCCC CSKCCCCGCCCCSY--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Original Motif GGGGSCBDVKGGGGGSSGGGYSD GGMGGRGGCGGVGC GGGGSSVGGGGGSGGVGSGGYSD Direction: Forward Position #: 5 Overlap #: 14 Alignment: GGGGSCBDVKGGGGGSSGGGYSD ----GGMGGRGGCGGVGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Reverse Complement Reverse Complement HSKCCSCVCCSCCCCCVSSCCCC GCVGCGGCBCCG HSKCSCCGCSGCCCCVVSSCCCC Direction: Forward Position #: 5 Overlap #: 12 Alignment: HSKCCSCVCCSCCCCCVSSCCCC ----GCVGCGGCBCCG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA Combined Motif Original Motif Reverse Complement HSKCSCCGCSGCCCCVVSSCCCC VVCACTTCCGG HSKCVCCVCTKCCSSVVSSCCCC Direction: Forward Position #: 5 Overlap #: 11 Alignment: HSKCSCCGCSGCCCCVVSSCCCC ----VVCACTTCCGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 23 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 TFF11 Reverse Complement Reverse Complement YCGCCCACGCH GCVCCGCCMCCYCC GCVCCGCCCMCKCM Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---YCGCCCACGCH GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif RGYGYGGGCGGVGC RGRGGAGRRGGHGGDG RGVGVGGRSGRGGVGGDG Direction: Forward Position #: 3 Overlap #: 12 Alignment: RGYGYGGGCGGVGC---- --RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif CHCCVCCMCSMCCBCVCM CYYCBBCYYYTCCHCCTYYY CHCCHCCVCCMCCBCCCCCTYYY Direction: Forward Position #: 4 Overlap #: 15 Alignment: CHCCVCCMCSMCCBCVCM----- ---CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Original Motif CHCCHCCVCCMCCBCCCCCTYYY BCCGCCCCGCCCCBB CHCSCCCCSCCCCBCCCCCTYYY Direction: Forward Position #: 1 Overlap #: 15 Alignment: CHCCHCCVCCMCCBCCCCCTYYY BCCGCCCCGCCCCBB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Original Motif CHCSCCCCSCCCCBCCCCCTYYY BBVGCCBVGGCCTV SBSSCCCMGSCCYBCCCCCTYYY Direction: Forward Position #: 1 Overlap #: 14 Alignment: CHCSCCCCSCCCCBCCCCCTYYY BBVGCCBVGGCCTV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif KKKAGGGGGBMGGSCRGGGSSBS DGVBCABTGDWGCGKRRCSR DGBDBVBBGVAGSGBRVSSVSBS Direction: Forward Position #: 1 Overlap #: 20 Alignment: KKKAGGGGGBMGGSCRGGGSSBS DGVBCABTGDWGCGKRRCSR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Reverse Complement DGBDBVBBGVAGSGBRVSSVSBS MSGGGGCGGGGYSG DGBDVVGGGGMGGGGVGSSVSBS Direction: Forward Position #: 5 Overlap #: 14 Alignment: DGBDBVBBGVAGSGBRVSSVSBS ----MSGGGGCGGGGYSG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Reverse Complement DGBDVVGGGGMGGGGVGSSVSBS BBGGGGCGGGGCVD BBGGGGCGGGGCGGGGVGSSVSBS Direction: Forward Position #: 2 Overlap #: 13 Alignment: -DGBDVVGGGGMGGGGVGSSVSBS BBGGGGCGGGGCVD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Original Motif Original Motif BBGGGGCGGGGCGGGGVGSSVSBS CGGCYBCGCG CGGSBBCGSGGCGGGGVGSSVSBS Direction: Forward Position #: 1 Overlap #: 10 Alignment: BBGGGGCGGGGCGGGGVGSSVSBS CGGCYBCGCG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Original Motif Reverse Complement CGGSBBCGSGGCGGGGVGSSVSBS GGGGGYGGGG SGGGGBSGGGGCGGGGVGSSVSBS Direction: Forward Position #: 1 Overlap #: 10 Alignment: CGGSBBCGSGGCGGGGVGSSVSBS GGGGGYGGGG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 24 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Motif 7 Original Motif Original Motif CCCCKCCCCC CSKCCCCGCCCCSY CSKCCCCGCCCCCY Direction: Forward Position #: 4 Overlap #: 10 Alignment: ---CCCCKCCCCC- CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Reverse Complement MGGGGGCGGGGYSG BBGGGGCGGGGCVD MGGGGGSGSGGSGSVD Direction: Forward Position #: 3 Overlap #: 12 Alignment: MGGGGGCGGGGYSG-- --BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement MGGGGGSGSGGSGSVD BBGGGGCGGGGCGGB MGGBGGGGGSGGGGCGGB Direction: Forward Position #: 4 Overlap #: 13 Alignment: MGGGGGSGSGGSGSVD-- ---BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Reverse Complement Reverse Complement BCCGCCCCSCCCCCBCCY GCVCCGCCMCCYCC SCVSCSCCSCCCCCBCCY Direction: Forward Position #: 1 Overlap #: 14 Alignment: BCCGCCCCSCCCCCBCCY GCVCCGCCMCCYCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement MGGBGGGGGSGGSGSVGS KKKAGGDGGAKKMGBBGKMG MGGKGGDGGBGGVGGVGBBGKMG Direction: Forward Position #: 4 Overlap #: 15 Alignment: MGGBGGGGGSGGSGSVGS----- ---KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Reverse Complement CYYCBBCBCCVCCBCCHCCYCCY CHCCBCCKMCTCCKCM CHCCBSCKCCBCCBCCHCCYCCY Direction: Forward Position #: 1 Overlap #: 16 Alignment: CYYCBBCBCCVCCBCCHCCYCCY CHCCBCCKMCTCCKCM------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif CHCCBSCKCCBCCBCCHCCYCCY BBVGCCBVGGCCTV CHCCBSCKCCBCSGCCTBCYCCY Direction: Forward Position #: 5 Overlap #: 14 Alignment: CHCCBSCKCCBCCBCCHCCYCCY ----BBVGCCBVGGCCTV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF1 Original Motif Original Motif CHCCBSCKCCBCSGCCTBCYCCY CGGVGCCGCVGC CBSMGCCGCVGCSGCCTBCYCCY Direction: Forward Position #: 1 Overlap #: 12 Alignment: CHCCBSCKCCBCSGCCTBCYCCY CGGVGCCGCVGC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Reverse Complement CBSMGCCGCVGCSGCCTBCYCCY CCCCCTTGGGCCCC CBSMSCCSCBDVGGCCYCCYCCY Direction: Forward Position #: 5 Overlap #: 14 Alignment: CBSMGCCGCVGCSGCCTBCYCCY ----CCCCCTTGGGCCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Reverse Complement Original Motif MGGKGGKGGCCVDVGSGGSRSBG DGGGYGKGGC HGGGBGKGGCCVDVGSGGSRSBG Direction: Forward Position #: 1 Overlap #: 10 Alignment: MGGKGGKGGCCVDVGSGGSRSBG DGGGYGKGGC------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 25 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFAP2A Zfx Reverse Complement Original Motif SCMVBBGGC BBVGCCBVGGCCTV TVSCCBVGGSCBBV Direction: Backward Position #: 3 Overlap #: 9 Alignment: ---SCMVBBGGC-- BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Original Motif VBBGSCCVBGGSVA GGGGCCCAAGGGGG GGGGSCCDVGGGGR Direction: Forward Position #: 1 Overlap #: 14 Alignment: VBBGSCCVBGGSVA GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Reverse Complement Reverse Complement KCCCCBDGGSCCCC GCVCCGCCMCCYCC KCCCCGCSSSCYCC Direction: Forward Position #: 1 Overlap #: 14 Alignment: KCCCCBDGGSCCCC GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement KCCCCGCSSSCYCC GCCACGTGSD GCCMCGTGSVCYCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: KCCCCGCSSSCYCC GCCACGTGSD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Reverse Complement Reverse Complement GGKGVSCACGRGGC CGCGBMGCCG SGSGBVSMCGRGGC Direction: Forward Position #: 1 Overlap #: 10 Alignment: GGKGVSCACGRGGC CGCGBMGCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement GCCMCGRSVBCSCS MSGKKRCGCWDCABTGBBCD GCCVSGDVMGCDBSABTGBBCD Direction: Forward Position #: 3 Overlap #: 12 Alignment: GCCMCGRSVBCSCS-------- --MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement GCCVSGDVMGCDBSABTGBBCD DCCACGTGCV GCCMCGTGCVCDBSABTGBBCD Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCVSGDVMGCDBSABTGBBCD DCCACGTGCV------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Reverse Complement HGVBCABTSBHGVGCACGYGGC KKKAGGDGGAKKMGBBGKMG BGBDBVBKGVBGMGSVSGHGGC Direction: Forward Position #: 1 Overlap #: 20 Alignment: HGVBCABTSBHGVGCACGYGGC KKKAGGDGGAKKMGBBGKMG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF1 Reverse Complement Reverse Complement GCCDCSBSCRCVVCRBVBDBCV GCVGCGGCBCCG GCCGCGGCCCCVVCRBVBDBCV Direction: Forward Position #: 1 Overlap #: 12 Alignment: GCCDCSBSCRCVVCRBVBDBCV GCVGCGGCBCCG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif BGBDBVBKGVVGGGGCCGCGGC RGRGGAGRRGGHGGDG BGBDVRVGGRVGRGGHVGVGGC Direction: Forward Position #: 5 Overlap #: 16 Alignment: BGBDBVBKGVVGGGGCCGCGGC ----RGRGGAGRRGGHGGDG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 26 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF GABPA Reverse Complement Original Motif GCGGACGTTV CCGGAAGTGVV VSCGGAMGTDV Direction: Backward Position #: 2 Overlap #: 10 Alignment: GCGGACGTTV- CCGGAAGTGVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Reverse Complement Original Motif VDACYTCCGSV BCACCTGCABC VVACCTSCRSV Direction: Forward Position #: 1 Overlap #: 11 Alignment: VDACYTCCGSV BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Reverse Complement VSKGSAGGTVV HCAGAATGTHD HCWGVAKGTHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: VSKGSAGGTVV HCAGAATGTHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Original Motif HCWGVAKGTHD SGGTCACGTGACCS BSRKCAYGTGACCS Direction: Forward Position #: 1 Overlap #: 11 Alignment: HCWGVAKGTHD--- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Reverse Complement Original Motif SGGTCACKTGYMSB GGMGGRGGCGGVGC GGVGGDSRCGKRBCSB Direction: Forward Position #: 3 Overlap #: 12 Alignment: --SGGTCACKTGYMSB GGMGGRGGCGGVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif BSGBMRCGKSHCCVCC CYYCBBCYYYTCCHCCTYYY BSGCHVCGKCHCCBCCHCCTYYY Direction: Forward Position #: 4 Overlap #: 13 Alignment: BSGBMRCGKSHCCVCC------- ---CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif BSGCHVCGKCHCCBCCHCCTYYY BCCGCCCCGCCCCBB BSGCHVCGCCCCSCCCCSYTYYY Direction: Forward Position #: 5 Overlap #: 15 Alignment: BSGCHVCGKCHCCBCCHCCTYYY ----BCCGCCCCGCCCCBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement BSGCHVCGCCCCSCCCCSYTYYY MSGKKRCGCWDCABTGBBCD VSGBBVCGCHHCVBYSCBCDYYY Direction: Forward Position #: 1 Overlap #: 20 Alignment: BSGCHVCGCCCCSCCCCSYTYYY MSGKKRCGCWDCABTGBBCD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Original Motif VSGBBVCGCHHCVBYSCBCDYYY HVGCCCCGCCCCBB VSGCCCCGCCCCVBYSCBCDYYY Direction: Forward Position #: 1 Overlap #: 14 Alignment: VSGBBVCGCHHCVBYSCBCDYYY HVGCCCCGCCCCBB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Original Motif Original Motif VSGCCCCGCCCCVBYSCBCDYYY DBGTAAATAHD VSGCCCCGCCCCVBYSCBCDBBTAAATAHD Direction: Forward Position #: 20 Overlap #: 4 Alignment: VSGCCCCGCCCCVBYSCBCDYYY------- -------------------DBGTAAATAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 27 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Motif 7 Reverse Complement Original Motif GCCYCMCCCD CSKCCCCGCCCCSY CSGCCCCVCCCHSY Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GCCYCMCCCD-- CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Original Motif CSGCCCCVCCCHSY HVGCCCCGCCCCBB CSGCCCCGCCCCSB Direction: Forward Position #: 1 Overlap #: 14 Alignment: CSGCCCCVCCCHSY HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Reverse Complement VSGGGGCGGGGCSG BBGGGGCGGGGCGGB VSDGGGSGSGGSGSGGB Direction: Forward Position #: 3 Overlap #: 12 Alignment: VSGGGGCGGGGCSG--- --BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement BCCSCSCCSCSCCCHSB GCVCCGCCMCCYCC BCCGCVCCGCCCCCBCC Direction: Forward Position #: 4 Overlap #: 14 Alignment: BCCSCSCCSCSCCCHSB ---GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif BCCGCVCCGCCCCCBCC CYYCBBCYYYTCCHCCTYYY BCCCCBCCSCCCCBCCYCCTYYY Direction: Forward Position #: 4 Overlap #: 14 Alignment: BCCGCVCCGCCCCCBCC------ ---CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Reverse Complement BCCCCBCCSCCCCBCCYCCTYYY CHCCBCCKMCTCCKCM CHCCHCCBVCYCCBCCYCCTYYY Direction: Forward Position #: 1 Overlap #: 16 Alignment: BCCCCBCCSCCCCBCCYCCTYYY CHCCBCCKMCTCCKCM------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Reverse Complement CHCCHCCBVCYCCBCCYCCTYYY VAGGCCBBGGCVBB CASSCCCBGSYCCBCCYCCTYYY Direction: Forward Position #: 1 Overlap #: 14 Alignment: CHCCHCCBVCYCCBCCYCCTYYY VAGGCCBBGGCVBB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Reverse Complement Reverse Complement KKKAGGKGGBGGKSCBGGGSSTG GGGGGYGGGG GGGRGBGGGGGGKSCBGGGSSTG Direction: Forward Position #: 1 Overlap #: 10 Alignment: KKKAGGKGGBGGKSCBGGGSSTG GGGGGYGGGG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Reverse Complement Original Motif CASSCCCBGSYCCCCCCBCMCCC VGCACGTGGH CMGCMCSTGSHCCCCCCBCMCCC Direction: Forward Position #: 2 Overlap #: 10 Alignment: CASSCCCBGSYCCCCCCBCMCCC -VGCACGTGGH------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement CMGCMCSTGSHCCCCCCBCMCCC MSGKKRCGCWDCABTGBBCD CMGCMCGKKRCVCHBCMBYVYHCD Direction: Forward Position #: 5 Overlap #: 19 Alignment: CMGCMCSTGSHCCCCCCBCMCCC- ----MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 28 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- E2F1 PLAG1 Reverse Complement Original Motif GCGCSAAA GGGGCCCAAGGGGG GGSGCCAAAGGGGG Direction: Forward Position #: 2 Overlap #: 8 Alignment: -GCGCSAAA----- GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Reverse Complement Original Motif CCCCCTTTGGCSCC DCAGCCAATVR CCCCCTTTGSMGCCAATVR Direction: Forward Position #: 9 Overlap #: 6 Alignment: CCCCCTTTGGCSCC----- --------DCAGCCAATVR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Reverse Complement CCCCCTTTGSMGCCAATVR GCVCCGCCMCCYCC SCCCCKYYVCMSCCAATVR Direction: Forward Position #: 1 Overlap #: 14 Alignment: CCCCCTTTGSMGCCAATVR GCVCCGCCMCCYCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Reverse Complement SCCCCKYYVCMSCCAATVR YCGCCCACGCH CCVCCBHCGCMSCCAATVR Direction: Forward Position #: 1 Overlap #: 11 Alignment: SCCCCKYYVCMSCCAATVR YCGCCCACGCH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Reverse Complement CCVCCBHCGCMSCCAATVR GCVGCGGCBCCG CCVSCVVCGSCBCCAATVR Direction: Forward Position #: 4 Overlap #: 12 Alignment: CCVCCBHCGCMSCCAATVR ---GCVGCGGCBCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Original Motif Original Motif CCVSCVVCGSCBCCAATVR ATMACAATAAAA CCVSCVVCGSCBCCAATMACAATAAAA Direction: Forward Position #: 16 Overlap #: 4 Alignment: CCVSCVVCGSCBCCAATVR-------- ---------------ATMACAATAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Reverse Complement Original Motif TTTTATTGTYATTGGBGSCGVVGSVGG ATTTWATGAAA WTTTAWTGWAATTGGBGSCGVVGSVGG Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTTTATTGTYATTGGBGSCGVVGSVGG ATTTWATGAAA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Original Motif CCVSCVVCGSCBCCAATTWCAWTAAAW HDWVAAAHAAAAAMAAAMWWWHBWA CCVSCVVCGSCBCCAATHDMAAWAAAAAAAMAAAMWWWHBWA Direction: Forward Position #: 18 Overlap #: 10 Alignment: CCVSCVVCGSCBCCAATTWCAWTAAAW--------------- -----------------HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Original Motif CCVSCVVCGSCBCCAATHDMAAWAAAAAAAMAAAMWWWHBWA BCCGCCCCGCCCCBB BCCSCCCCGCSCCBCCAATHDMAAWAAAAAAAMAAAMWWWHBWA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --CCVSCVVCGSCBCCAATHDMAAWAAAAAAAMAAAMWWWHBWA BCCGCCCCGCCCCBB----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 Combined Motif Original Motif Original Motif BCCSCCCCGCSCCBCCAATHDMAAWAAAAAAAMAAAMWWWHBWA CGGCYBCGCG BCCSCCCCGCGSCBBCRMKHDMAAWAAAAAAAMAAAMWWWHBWA Direction: Forward Position #: 10 Overlap #: 10 Alignment: BCCSCCCCGCSCCBCCAATHDMAAWAAAAAAAMAAAMWWWHBWA ---------CGGCYBCGCG------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 29 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIF1AARNT Mycn Original Motif Reverse Complement VBACGTGV GCCACGTGSD DSCACGTGSG Direction: Backward Position #: 2 Overlap #: 8 Alignment: -VBACGTGV- GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Reverse Complement Original Motif CSCACGTGSH VGCACGTGGH CSCACGTGGH Direction: Forward Position #: 1 Overlap #: 10 Alignment: CSCACGTGSH VGCACGTGGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Reverse Complement Original Motif DCCACGTGSG BCACCTGCABC DBCACSTGCABC Direction: Forward Position #: 2 Overlap #: 9 Alignment: DCCACGTGSG-- -BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Reverse Complement Reverse Complement GBTGCASGTGBH SGGTCACGTGACCS SSKKCACGTGDCCS Direction: Forward Position #: 1 Overlap #: 12 Alignment: GBTGCASGTGBH-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Combined Motif Reverse Complement Reverse Complement SGGDCACGTGRYSS GCGGACGTTV SGSGSACGTKVYSS Direction: Forward Position #: 2 Overlap #: 10 Alignment: SGGDCACGTGRYSS -GCGGACGTTV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif SGSGSACGTKVYSS DGVBCABTGDWGCGKRRCSR SGSDSMMSTGVHGCGKRRCSR Direction: Forward Position #: 2 Overlap #: 13 Alignment: SGSGSACGTKVYSS------- -DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 30 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 TFM12 Reverse Complement Original Motif CCCCCTTGGGCCCC CYYCBBCYYYTCCHCCTYYY TYYYCCCCCYTBKSCCCCCY Direction: Backward Position #: 5 Overlap #: 14 Alignment: --CCCCCTTGGGCCCC---- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Original Motif MGGGGGSYBAMGGGGGKKKA RGRGGAGRRGGHGGDG RGAGGRGGRGSHRGGGGGKKKA Direction: Forward Position #: 3 Overlap #: 14 Alignment: --MGGGGGSYBAMGGGGGKKKA RGRGGAGRRGGHGGDG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif RGAGGRGGRGSHRGGGGGKKKA BBVGCCBVGGCCTV RGAGGVGGSSBVGGCSKGKKKA Direction: Forward Position #: 5 Overlap #: 14 Alignment: RGAGGRGGRGSHRGGGGGKKKA ----BBVGCCBVGGCCTV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Reverse Complement RGAGGVGGSSBVGGCSKGKKKA BBGGGGCGGGGCGGB VVRGGGCGGGGCGGBSKGKKKA Direction: Forward Position #: 1 Overlap #: 15 Alignment: RGAGGVGGSSBVGGCSKGKKKA BBGGGGCGGGGCGGB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement VVRGGGCGGGGCGGBSKGKKKA MSGKKRCGCWDCABTGBBCD VSGGGRCGSDKCRGBSBBVKKA Direction: Forward Position #: 1 Overlap #: 20 Alignment: VVRGGGCGGGGCGGBSKGKKKA MSGKKRCGCWDCABTGBBCD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif TYYVBVSVCMGYHSCGMCCCSB CSKCCCCGCCCCSY TYYVBVBCCCSBCCCSVYCCSB Direction: Forward Position #: 5 Overlap #: 14 Alignment: TYYVBVSVCMGYHSCGMCCCSB ----CSKCCCCGCCCCSY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Original Motif VSGGKVSGGGBSGGGBVBVKKA GGMGGRGGCGGVGC VSGGGGVGGGGGSGGVGSVKKA Direction: Forward Position #: 5 Overlap #: 14 Alignment: VSGGKVSGGGBSGGGBVBVKKA ----GGMGGRGGCGGVGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Reverse Complement VSGGGGVGGGGGSGGVGSVKKA BBGGGGCGGGGCVD VSGGGBGGGGCGGGGCGBVKKA Direction: Forward Position #: 5 Overlap #: 14 Alignment: VSGGGGVGGGGGSGGVGSVKKA ----BBGGGGCGGGGCVD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF1 Reverse Complement Reverse Complement TYYVBCGCCCCGCCCCBCCCSB GCVGCGGCBCCG KCHGCSGCCCCGCCCCBCCCSB Direction: Forward Position #: 1 Overlap #: 12 Alignment: TYYVBCGCCCCGCCCCBCCCSB GCVGCGGCBCCG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Reverse Complement Reverse Complement VSGGGBGGGGCGGGGCSGCDGY GGGGGYGGGG VGGGGBGGGGCGGGGCSGCDGY Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSGGGBGGGGCGGGGCSGCDGY GGGGGYGGGG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 31 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 TFM12 Original Motif Reverse Complement DGVBCABTGDWGCGKRRCSR KKKAGGDGGAKKMGBBGKMG DGBDBVBKGADGMGKVRSVG Direction: Forward Position #: 1 Overlap #: 20 Alignment: DGVBCABTGDWGCGKRRCSR KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Original Motif CVSMVRCRCDTCRBVBDBCH HDWVAAAHAAAAAMAAAMWWWHBWA CDVHVAMRCADHRVVAAHMHWWHBWA Direction: Forward Position #: 2 Overlap #: 19 Alignment: CVSMVRCRCDTCRBVBDBCH------ -HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif TWVHWWHRHTTBBKDDTGKYTVHVDG WWHTTTTTCABAAWTTWA TWVHWWWDTTTHTYABWRWYTHAVDG Direction: Forward Position #: 6 Overlap #: 18 Alignment: TWVHWWHRHTTBBKDDTGKYTVHVDG -----WWHTTTTTCABAAWTTWA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Reverse Complement CDVTHAMWKWVTKAHAAADWWWHBWA CHCCBCCKMCTCCKCM CHCMBBCDMHTHMTBMHAAADWWWHBWA Direction: Forward Position #: 3 Overlap #: 14 Alignment: --CDVTHAMWKWVTKAHAAADWWWHBWA CHCCBCCKMCTCCKCM------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif TWVHWWWDTTTHYBARDAHYDGBBRGDG WTKTTTTTHWTTTTTTBT TWDDTTTDTDTTTDWDKVHYDGBBRGDG Direction: Forward Position #: 2 Overlap #: 18 Alignment: TWVHWWWDTTTHYBARDAHYDGBBRGDG -WTKTTTTTHWTTTTTTBT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement TWDDTTTDTDTTTDWDKVHYDGBBRGDG BBGGGGCGGGGCGGB TWDDTTTDTDTTTDWDKDBBGGGCGGGGCGGB Direction: Forward Position #: 18 Overlap #: 11 Alignment: TWDDTTTDTDTTTDWDKVHYDGBBRGDG---- -----------------BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif BCCGCCCCGCCCBVHRDWDAAADADAAADDWA ATKAAWTTTTRMAABAHHTW BCCGCCMYKHMHHTHWRAAAHAHAWAAADDWA Direction: Forward Position #: 7 Overlap #: 20 Alignment: BCCGCCCCGCCCBVHRDWDAAADADAAADDWA ------ATKAAWTTTTRMAABAHHTW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Original Motif BCCGCCMYKHMHHTHWRAAAHAHAWAAADDWA HVGCCCCGCCCCBB BCCGCCCCGCCCCBHWRAAAHAHAWAAADDWA Direction: Forward Position #: 2 Overlap #: 14 Alignment: BCCGCCMYKHMHHTHWRAAAHAHAWAAADDWA -HVGCCCCGCCCCBB----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif BCCGCCCCGCCCCBHWRAAAHAHAWAAADDWA CSKCCCCGCCCCSY BCCGCCCCGCCCCGCHVMVHHAHAWAAADDWA Direction: Forward Position #: 7 Overlap #: 14 Alignment: BCCGCCCCGCCCCBHWRAAAHAHAWAAADDWA ------CSKCCCCGCCCCSY------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 2 Original Motif Reverse Complement BCCGCCCCGCCCCGCHVMVHHAHAWAAADDWA MTMMTCMMTCTKCK MBMSCCCCKCYBCKCHVMVHHAHAWAAADDWA Direction: Forward Position #: 1 Overlap #: 14 Alignment: BCCGCCCCGCCCCGCHVMVHHAHAWAAADDWA MTMMTCMMTCTKCK------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 32 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ArntAhr Egr1 Reverse Complement Reverse Complement CACGCM YCGCCCACGCH CACGCMYCGCC Direction: Backward Position #: 1 Overlap #: 6 Alignment: -----CACGCM YCGCCCACGCH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HIF1AARNT Original Motif Reverse Complement CACGCMYCGCC VCACGTBV VCACGYHHCGCC Direction: Forward Position #: 2 Overlap #: 7 Alignment: -CACGCMYCGCC VCACGTBV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Original Motif VCACGYHHCGCC HSCACGTGGC HSCACGYGBCGCC Direction: Forward Position #: 2 Overlap #: 9 Alignment: -VCACGYHHCGCC HSCACGTGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Original Motif HSCACGYGBCGCC HVGCCCCGCCCCBB HVGCCMCGCSCCGCC Direction: Forward Position #: 3 Overlap #: 12 Alignment: --HSCACGYGBCGCC HVGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Original Motif HVGCCMCGCSCCGCC VGCACGTGGH VVCMCVYGSCCCGCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: HVGCCMCGCSCCGCC VGCACGTGGH----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Reverse Complement Original Motif GGCGGGSCKVGYGVV GGCGGGGC GGCGGGGCKVGYGVV Direction: Forward Position #: 1 Overlap #: 8 Alignment: GGCGGGSCKVGYGVV GGCGGGGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Reverse Complement Reverse Complement VVCMCVYGCCCCGCC SGGTCACGTGACCS VSSHCACGYSMCSCC Direction: Forward Position #: 1 Overlap #: 14 Alignment: VVCMCVYGCCCCGCC SGGTCACGTGACCS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif VSSHCACGYSMCSCC BCCGCCCCGCCCCBB VSSHCRCSCCGCCCCBB Direction: Forward Position #: 3 Overlap #: 13 Alignment: VSSHCACGYSMCSCC-- --BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Reverse Complement Reverse Complement BBGGGGCGGSGMGDSSV MSGGGGCGGGGYSG VSGGGGCGGGGCGDSSV Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBGGGGCGGSGMGDSSV MSGGGGCGGGGYSG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Original Motif Original Motif VSGGGGCGGGGCGDSSV SCGCGCGG BCGSGSSGGGGCGDSSV Direction: Forward Position #: 1 Overlap #: 8 Alignment: VSGGGGCGGGGCGDSSV SCGCGCGG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 33 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Myc Original Motif Original Motif HSCACGTGGC VGCACGTGGH VSCACGTGGC Direction: Backward Position #: 1 Overlap #: 10 Alignment: HSCACGTGGC VGCACGTGGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Reverse Complement Original Motif GCCACGTGSV SGGTCACGTGACCS SGGYCACGTGMVCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GCCACGTGSV-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA Combined Motif Reverse Complement Original Motif SGVYCACGTGMCCS CCGGAAGTGVV SSCGSAMGTGVCCS Direction: Forward Position #: 2 Overlap #: 11 Alignment: SGVYCACGTGMCCS -CCGGAAGTGVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Reverse Complement Reverse Complement SGGBCACYTSCGSS GCCYCMCCCD GSSYCMCCYVCGSS Direction: Forward Position #: 1 Overlap #: 10 Alignment: SGGBCACYTSCGSS GCCYCMCCCD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Original Motif SSCGVMGGYGMSSC GGMGGRGGCGGVGC SSSGVVGGKGCGGVGC Direction: Forward Position #: 3 Overlap #: 12 Alignment: SSCGVMGGYGMSSC-- --GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Original Motif SSSGVVGGKGCGGVGC BBVGCCBVGGCCTV SSSGVCGRGGCSKVGC Direction: Forward Position #: 1 Overlap #: 14 Alignment: SSSGVVGGKGCGGVGC BBVGCCBVGGCCTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Reverse Complement SSSGVCGRGGCSKVGC CCCCCTTGGGCCCC CCCSCYDRGGCCBCGC Direction: Forward Position #: 1 Overlap #: 14 Alignment: SSSGVCGRGGCSKVGC CCCCCTTGGGCCCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Reverse Complement CCCSCYDRGGCCBCGC BBGGGGCGGGGCVD BSSSGSCGGGGCSBCGC Direction: Forward Position #: 2 Overlap #: 13 Alignment: -CCCSCYDRGGCCBCGC BBGGGGCGGGGCVD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Original Motif Reverse Complement BSSSGSCGGGGCSBCGC MSGGGGCGGGGYSG VSGGGGCGGGGCSBCGC Direction: Forward Position #: 1 Overlap #: 14 Alignment: BSSSGSCGGGGCSBCGC MSGGGGCGGGGYSG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Original Motif GCGBSGCCCCGCCCCSB BCCGCCCCGCCCCBB GCGBSSSCCCSSCCCCBB Direction: Forward Position #: 4 Overlap #: 14 Alignment: GCGBSGCCCCGCCCCSB- ---BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 34 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Mycn Reverse Complement Reverse Complement DCCACGTGCV GCCACGTGSD GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCACGTGCV GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Original Motif GCCACGTGSV SGGTCACGTGACCS SGGYCACGTGMVCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GCCACGTGSV-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA Combined Motif Reverse Complement Original Motif SGVYCACGTGMCCS CCGGAAGTGVV SSCGSAMGTGVCCS Direction: Forward Position #: 2 Overlap #: 11 Alignment: SGVYCACGTGMCCS -CCGGAAGTGVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement SSCGSAMGTGVCCS GCVCCGCCMCCYCC SSSSSMCGYSMCCBCC Direction: Forward Position #: 3 Overlap #: 12 Alignment: SSCGSAMGTGVCCS-- --GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Reverse Complement Original Motif GGBGGRSKCGYSSSSS DGGGYGKGGC GGDGGGBGBGKCSSSS Direction: Forward Position #: 3 Overlap #: 10 Alignment: GGBGGRSKCGYSSSSS --DGGGYGKGGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Original Motif SSSSGYCBCBCCCDCC BBVGCCBVGGCCTV SSSSSCCVSGCCYVCC Direction: Forward Position #: 1 Overlap #: 14 Alignment: SSSSGYCBCBCCCDCC BBVGCCBVGGCCTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Original Motif SSSSSCCVSGCCYVCC HVGCCCCGCCCCBB VSGCCCCGCSCCBVCC Direction: Forward Position #: 1 Overlap #: 14 Alignment: SSSSSCCVSGCCYVCC HVGCCCCGCCCCBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Original Motif GGVBGGSGCGGGGCSV GGGGCCCAAGGGGG GGVGGGGSCVDVGSGGG Direction: Forward Position #: 4 Overlap #: 13 Alignment: GGVBGGSGCGGGGCSV- ---GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif CCCSCVHVGSCCCCVCC CSKCCCCGCCCCSY CCCSCCCCGCCCCCBCC Direction: Forward Position #: 2 Overlap #: 14 Alignment: CCCSCVHVGSCCCCVCC -CSKCCCCGCCCCSY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Original Motif CCCSCCCCGCCCCCBCC BCCGCCCCGCCCCBB CCCGCCCCGCCCCSBCC Direction: Forward Position #: 1 Overlap #: 15 Alignment: CCCSCCCCGCCCCCBCC BCCGCCCCGCCCCBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 35 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA TFM12 Reverse Complement Original Motif VVCACTTCCGG CYYCBBCYYYTCCHCCTYYY CYYCVBCHCTTCCGSCTYYY Direction: Forward Position #: 5 Overlap #: 11 Alignment: ----VVCACTTCCGG----- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Reverse Complement CYYCVBCHCTTCCGSCTYYY CHCCBCCKMCTCCKCM CHCCBSCDCYTCCKSCTYYY Direction: Forward Position #: 1 Overlap #: 16 Alignment: CYYCVBCHCTTCCGSCTYYY CHCCBCCKMCTCCKCM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Original Motif KKKAGSYGGAKGDGSVGGDG DGVBCABTGDWGCGKRRCSR DGBDVVBKGADGVGKVRSVG Direction: Forward Position #: 1 Overlap #: 20 Alignment: KKKAGSYGGAKGDGSVGGDG DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement CVSMBYCVCDTCYBBVDBCH VAGGCCBBGGCVBB CVSMBASGCCTCBGBVBBCH Direction: Forward Position #: 5 Overlap #: 14 Alignment: CVSMBYCVCDTCYBBVDBCH ----VAGGCCBBGGCVBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Original Motif Original Motif CVSMBASGCCTCBGBVBBCH BCACCTGCABC CBVACCTGCABCBGBVBBCH Direction: Forward Position #: 2 Overlap #: 11 Alignment: CVSMBASGCCTCBGBVBBCH -BCACCTGCABC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Reverse Complement Original Motif DGBBVBCBGBTGCAGGTVBG DBGTAAATAHD HBGYARRTAHRDGBBVBCBG Direction: Backward Position #: 1 Overlap #: 11 Alignment: DGBBVBCBGBTGCAGGTVBG ---------DBGTAAATAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 36 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc cccGCCCCGCCCCsb Original Motif Original Motif HVGCCCCGCCCCBB BCCGCCCCGCCCCBB CCGCCCCGCCCCBBB Direction: Backward Position #: 1 Overlap #: 14 Alignment: -HVGCCCCGCCCCBB BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Original Motif Original Motif CCGCCCCGCCCCBBB CSKCCCCGCCCCSY CCGCCCCGCCCCSBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: CCGCCCCGCCCCBBB CSKCCCCGCCCCSY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement CCGCCCCGCCCCSBB MSGKKRCGCWDCABTGBBCD MSGCYMCGCHYCVBBGBBCD Direction: Forward Position #: 1 Overlap #: 15 Alignment: CCGCCCCGCCCCSBB----- MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement HGVBCVBBGKDGCGRKGCSR KKKAGGDGGAKKMGBBGKMG HGVBBDBHGGDGSRBKVSSVGKMG Direction: Forward Position #: 5 Overlap #: 16 Alignment: HGVBCVBBGKDGCGRKGCSR---- ----KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Reverse Complement CYYCVSSVYBMSCHCCHBHBBBCD CHCCBCCKMCTCCKCM CHCCHSCKCCBCCBCCHBHBBBCD Direction: Forward Position #: 1 Overlap #: 16 Alignment: CYYCVSSVYBMSCHCCHBHBBBCD CHCCBCCKMCTCCKCM-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif CHCCHSCKCCBCCBCCHBHBBBCD BBVGCCBVGGCCTV CHCCBSSGCCBVSGCCTBHBBBCD Direction: Forward Position #: 5 Overlap #: 14 Alignment: CHCCHSCKCCBCCBCCHBHBBBCD ----BBVGCCBVGGCCTV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement CHCCBSSGCCBVSGCCTBHBBBCD GCVCCGCCMCCYCC CHCCBSCVCCGCCVCCTCCBBBCD Direction: Forward Position #: 6 Overlap #: 14 Alignment: CHCCBSSGCCBVSGCCTBHBBBCD -----GCVCCGCCMCCYCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Original Motif Reverse Complement CHCCBSCVCCGCCVCCTCCBBBCD SGGTCACGTGACCS CHCCSGYCMCGYSACCBCCBBBCD Direction: Forward Position #: 4 Overlap #: 14 Alignment: CHCCBSCVCCGCCVCCTCCBBBCD ---SGGTCACGTGACCS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Reverse Complement CHCCSGYCMCGYSACCBCCBBBCD CCCCCTTGGGCCCC CCCCCBDGBSCCSCSACCBCCBBBCD Direction: Forward Position #: 3 Overlap #: 12 Alignment: --CHCCSGYCMCGYSACCBCCBBBCD CCCCCTTGGGCCCC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Reverse Complement CCCCCBDGBSCCSCSACCBCCBBBCD GCVGCGGCBCCG CSCCSCDGCBCCSCSACCBCCBBBCD Direction: Forward Position #: 2 Overlap #: 12 Alignment: CCCCCBDGBSCCSCSACCBCCBBBCD -GCVGCGGCBCCG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 37 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw wwAAATAATAtw Original Motif Original Motif HDAAATAATAHW HDAAATAATADD HDAAATAATAHW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATAHW HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Original Motif Original Motif HDAAATAATAHW AWAAAWTWAAASWA AHAAATWAWAAVWA Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATAHW-- AWAAAWTWAAASWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Reverse Complement TWBTTWTWATTTHT TWVHWWWYTTTYTTTTTHTTTVWBH TWBWTWTWWTTTTTTTTTTHTTTVWBH Direction: Forward Position #: 3 Overlap #: 12 Alignment: TWBTTWTWATTTHT------------- --TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif TWBWTWTWWTTTTTTTTTTHTTTVWBH WTKTTTTTHWTTTTTTBT WWBTTTTTHTTTTTTTDTTHTTTVWBH Direction: Forward Position #: 1 Overlap #: 18 Alignment: TWBWTWTWWTTTTTTTTTTHTTTVWBH WTKTTTTTHWTTTTTTBT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Reverse Complement Reverse Complement HDWVAAAHAADAAAAAAAHAAAAAVWW TTTDAWATATHATT THTVAAATAWHAWWAAAAHAAAAAVWW Direction: Forward Position #: 1 Overlap #: 14 Alignment: HDWVAAAHAADAAAAAAAHAAAAAVWW TTTDAWATATHATT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement THTVAAATAWHAWWAAAAHAAAAAVWW AAATTKTATTTAWT THTVAAATWDTATTTAAWHAAAAAVWW Direction: Forward Position #: 5 Overlap #: 14 Alignment: THTVAAATAWHAWWAAAAHAAAAAVWW ----AAATTKTATTTAWT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif THTVAAATWDTATTTAAWHAAAAAVWW ATKAAWTTTTRMAABAHHTW THTVAAWTWWWWTTTAAWHDAAMWAWW Direction: Forward Position #: 6 Overlap #: 20 Alignment: THTVAAATWDTATTTAAWHAAAAAVWW -----ATKAAWTTTTRMAABAHHTW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Reverse Complement WWTWYTTDHWTTAAAWWWWAWTTVAHA TWAAWTTVTGAAAAAHWW TWWATTTHTKWWAAAWWWWAWTTVAHA Direction: Forward Position #: 1 Overlap #: 18 Alignment: WWTWYTTDHWTTAAAWWWWAWTTVAHA TWAAWTTVTGAAAAAHWW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Reverse Complement THTVAAWTWWWWTTTWWYAHAAATWWA TCAAAATKAWTTGT TCWAAATKAWTTKTTWWYAHAAATWWA Direction: Forward Position #: 1 Overlap #: 14 Alignment: THTVAAWTWWWWTTTWWYAHAAATWWA TCAAAATKAWTTGT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Reverse Complement TCWAAATKAWTTKTTWWYAHAAATWWA WWTAKTTCDKAATT TCWAAATTADTTBTKAATWHAAATWWA Direction: Forward Position #: 6 Overlap #: 14 Alignment: TCWAAATKAWTTKTTWWYAHAAATWWA -----WWTAKTTCDKAATT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 38 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb TFM12 Original Motif Original Motif BCCGCCCCGCCCCBB CYYCBBCYYYTCCHCCTYYY CYBCVGCCCCGCCCCBBYYY Direction: Forward Position #: 3 Overlap #: 15 Alignment: --BCCGCCCCGCCCCBB--- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Reverse Complement CYBCVGCCCCGCCCCBBYYY CHCCBCCKMCTCCKCM CHCCBSCBCCKCCYCCBYYY Direction: Forward Position #: 1 Overlap #: 16 Alignment: CYBCVGCCCCGCCCCBBYYY CHCCBCCKMCTCCKCM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif KKKVGGMGGRGGVGSBGGDG DGVBCABTGDWGCGKRRCSR DGBDVRVKGRDGMGBVRSVG Direction: Forward Position #: 1 Overlap #: 20 Alignment: KKKVGGMGGRGGVGSBGGDG DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Reverse Complement Original Motif CVSMVBCRCHKCYVMVHBCH HVGCCCCGCCCCBB CVGCCCCGCCYCBVMVHBCH Direction: Forward Position #: 1 Overlap #: 14 Alignment: CVSMVBCRCHKCYVMVHBCH HVGCCCCGCCCCBB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Original Motif Original Motif CVGCCCCGCCYCBVMVHBCH CSKCCCCGCCCCSY CVGCCCCGCCCCBBMVHBCH Direction: Forward Position #: 1 Overlap #: 14 Alignment: CVGCCCCGCCYCBVMVHBCH CSKCCCCGCCCCSY------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement CVGCCCCGCCCCBBMVHBCH VAGGCCBBGGCVBB CVGCCMSGCCYCGBMVBBCH Direction: Forward Position #: 5 Overlap #: 14 Alignment: CVGCCCCGCCCCBBMVHBCH ----VAGGCCBBGGCVBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Reverse Complement Original Motif DGBBVRBCGKGGCSYGGCVG GGMGGRGGCGGVGC GGVVGRGSSGGGSSYGGCVG Direction: Forward Position #: 1 Overlap #: 14 Alignment: DGBBVRBCGKGGCSYGGCVG GGMGGRGGCGGVGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Reverse Complement Original Motif CVGCCMSSCCCSSCMCVVCC SGGTCACGTGACCS CVGCSVGBCMCGTSACCVCC Direction: Forward Position #: 5 Overlap #: 14 Alignment: CVGCCMSSCCCSSCMCVVCC ----SGGTCACGTGACCS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Original Motif GGVGGTSACGYGVCVSGCVG GGGGCCCAAGGGGG GGGGSYCAMGKGGSVSGCVG Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGVGGTSACGYGVCVSGCVG GGGGCCCAAGGGGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Reverse Complement Original Motif CVGCSVSCCYCRTGKSCCCC CGGVGCCGCVGC CVGCCGGMSCCGYVGCCCCC Direction: Forward Position #: 5 Overlap #: 12 Alignment: CVGCSVSCCYCRTGKSCCCC ----CGGVGCCGCVGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 39 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr tkAAATAATAtw Reverse Complement Reverse Complement MBATTGGCTGH WHTATTATTTDH WVTATTRKYTVH Direction: Forward Position #: 2 Overlap #: 11 Alignment: -MBATTGGCTGH WHTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Reverse Complement HVAKYMAATABW HCAGAATGTHD HCAGAAWRTMDW Direction: Forward Position #: 1 Overlap #: 11 Alignment: HVAKYMAATABW HCAGAATGTHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Original Motif HCAGAAWRTMDW HDAAATAATADD HHARAWAATADW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HCAGAAWRTMDW HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Reverse Complement Reverse Complement WDTATTWTMTDH GBTGCAGGTGB WDTATTWDHTGCAGGTGB Direction: Forward Position #: 8 Overlap #: 5 Alignment: WDTATTWTMTDH------ -------GBTGCAGGTGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif WDTATTWDHTGCAGGTGB GGMGGRGGCGGVGC WDTATTWDHTGSAGGTGGCGGVGC Direction: Forward Position #: 11 Overlap #: 8 Alignment: WDTATTWDHTGCAGGTGB------ ----------GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Original Motif GCVCCGCCACCTSCADDWAATADW HDWVAAAHAAAAAMAAAMWWWHBWA GCVCCGHCAMMHVMADAHAAWAHWWHBWA Direction: Forward Position #: 5 Overlap #: 20 Alignment: GCVCCGCCACCTSCADDWAATADW----- ----HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 40 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc wsTACwGTAsw Original Motif Reverse Complement BCACCTGCABC DBTACWGTAVH DBWMCTGYAVH Direction: Forward Position #: 1 Overlap #: 11 Alignment: BCACCTGCABC DBTACWGTAVH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Original Motif DVTKCAGYWBD DHACATTCTGH DHACATTCWGYWBD Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---DVTKCAGYWBD DHACATTCTGH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 41 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw tkAAATAATAtw Original Motif Original Motif HDAAATAATADD HDAAATAATAHW HDAAATAATAHW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATADD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Original Motif Original Motif HDAAATAATAHW AWAAAWTWAAASWA AHAAATWAWAAVWA Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATAHW-- AWAAAWTWAAASWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement AHAAATWAWAAVWA ABAAAAAAWHAAAAARAW AHADAWAAAAWDAAAAARAW Direction: Forward Position #: 3 Overlap #: 12 Alignment: AHAAATWAWAAVWA------ --ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Reverse Complement Reverse Complement WTKTTTTTDWTTTTWTDTHT TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWWBTTTTTDTTTTTTTDTHH Direction: Forward Position #: 6 Overlap #: 20 Alignment: -----WTKTTTTTDWTTTTWTDTHT TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Reverse Complement Reverse Complement HHADAAAAAAADAAAAAVWWWHBWA TTTDAWATATHATT THTDAAATAWWRWWAAAVWWWHBWA Direction: Forward Position #: 1 Overlap #: 14 Alignment: HHADAAAAAAADAAAAAVWWWHBWA TTTDAWATATHATT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif THTDAAATAWWRWWAAAVWWWHBWA ATKAAWTTTTRMAABAHHTW THTDAAWTAWWWTTWAAAADAHHWA Direction: Forward Position #: 6 Overlap #: 20 Alignment: THTDAAATAWWRWWAAAVWWWHBWA -----ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Original Motif THTDAAWTAWWWTTWAAAADAHHWA AWTAAATAYAATTT WWTAAATAHAATTTWAAAADAHHWA Direction: Forward Position #: 1 Overlap #: 14 Alignment: THTDAAWTAWWWTTWAAAADAHHWA AWTAAATAYAATTT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Original Motif TWHHTDTTTTWAAATTHTATTTAWW WWHTTTTTCABAAWTTWA WWHTTDTTYWHAAATTWWATTTAWW Direction: Forward Position #: 1 Overlap #: 18 Alignment: TWHHTDTTTTWAAATTHTATTTAWW WWHTTTTTCABAAWTTWA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Reverse Complement WWTAAATWWAATTTHWKAADAAHWW TCAAAATKAWTTGT TCWAAATKAWWTKTHWKAADAAHWW Direction: Forward Position #: 1 Overlap #: 14 Alignment: WWTAAATWWAATTTHWKAADAAHWW TCAAAATKAWTTGT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Original Motif WWHTTDTTYWHAYAWWTRATTTWGA AATTYDGAARTAWW WWHTWATTYWKAMAWAWWATTTWGA Direction: Forward Position #: 5 Overlap #: 14 Alignment: WWHTTDTTYWHAYAWWTRATTTWGA ----AATTYDGAARTAWW------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 42 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Pax5 Original Motif Original Motif SGGTCACGTGACCS DGVBCABTGDWGCGKRRCSR DGVBCABBGWHRCGTGACSV Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------SGGTCACGTGACCS DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Reverse Complement Reverse Complement VSGTCACGKDWCBBTGBBCD BBGGGGCGGGGCVD VSGKSRCGGGGCBBTGBBCD Direction: Forward Position #: 1 Overlap #: 14 Alignment: VSGTCACGKDWCBBTGBBCD BBGGGGCGGGGCVD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement VSGKSRCGGGGCBBTGBBCD BBGGGGCGGGGCGGB VSGBSGSGGSGSGGYGBBCD Direction: Forward Position #: 4 Overlap #: 15 Alignment: VSGKSRCGGGGCBBTGBBCD ---BBGGGGCGGGGCGGB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif HGBBCKCCSCSCCSCSBCSV CSKCCCCGCCCCSY HGBBCBBCCCCSCCCCBCSV Direction: Forward Position #: 5 Overlap #: 14 Alignment: HGBBCKCCSCSCCSCSBCSV ----CSKCCCCGCCCCSY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Reverse Complement Original Motif VSGBGGGGSGGGGBBGBBCD GGMGGRGGCGGVGC GGVGGGGGCGGGGSBGBBCD Direction: Forward Position #: 1 Overlap #: 14 Alignment: VSGBGGGGSGGGGBBGBBCD GGMGGRGGCGGVGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Reverse Complement Original Motif HGBBCBSCCCCGCCCCCVCC CGGVGCCGCVGC HGBBCGGCSCCGCSVCCVCC Direction: Forward Position #: 5 Overlap #: 12 Alignment: HGBBCBSCCCCGCCCCCVCC ----CGGVGCCGCVGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Reverse Complement Reverse Complement GGVGGVSGCGGSGCCGBBCD GBTGCAGGTGB GGVTGCAGSKGBGCCGBBCD Direction: Forward Position #: 2 Overlap #: 11 Alignment: GGVGGVSGCGGSGCCGBBCD -GBTGCAGGTGB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Reverse Complement Reverse Complement HGBBCGGCBCRSCTGCAVCC CGCGBMGCCG CGCGBVGCCSRSCTGCAVCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: HGBBCGGCBCRSCTGCAVCC CGCGBMGCCG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Original Motif CGCGBVGCCSRSCTGCAVCC HGCGTGGGCGK HGCGTGGSCGDSCTGCAVCC Direction: Forward Position #: 1 Overlap #: 11 Alignment: CGCGBVGCCSRSCTGCAVCC HGCGTGGGCGK--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Reverse Complement HGCGTGGSCGDSCTGCAVCC CCCCCTTGGGCCCC CCCSCKTGGGCSVCCTGCAVCC Direction: Forward Position #: 3 Overlap #: 12 Alignment: --HGCGTGGSCGDSCTGCAVCC CCCCCTTGGGCCCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 43 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw kcACCTGCAgc Original Motif Reverse Complement HVTACWGTABD GBTGCAGGTGB DVTRCAGKWBH Direction: Forward Position #: 1 Overlap #: 11 Alignment: HVTACWGTABD GBTGCAGGTGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Reverse Complement DVTRCAGKWBH DDTATTATTTDH DVTAYWRTWDDH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DVTRCAGKWBH- DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tkAAATAATAtw Original Motif Reverse Complement DVTAYWRTWDDH WHTATTATTTDH DHTATTATTTDH Direction: Forward Position #: 1 Overlap #: 12 Alignment: DVTAYWRTWDDH WHTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Reverse Complement DHTATTATTTDH WWTAKTTCDKAATT WWTATTWYTKAATT Direction: Forward Position #: 1 Overlap #: 12 Alignment: DHTATTATTTDH-- WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Reverse Complement Original Motif AATTRAMWAATAWW DBGTAAATAHD AATBRWAAAWWAHW Direction: Forward Position #: 3 Overlap #: 11 Alignment: AATTRAMWAATAWW --DBGTAAATAHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Reverse Complement AATBRWAAAWWAHW TTTDAWATATHATT AATTTDAAATAWHATT Direction: Forward Position #: 3 Overlap #: 12 Alignment: AATBRWAAAWWAHW-- --TTTDAWATATHATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Reverse Complement AATHWTATTTDAAATT TWAAWTTVTGAAAAAHWW AATTWWATTTVWRATWAAHWW Direction: Forward Position #: 4 Overlap #: 13 Alignment: AATHWTATTTDAAATT----- ---TWAAWTTVTGAAAAAHWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif AATTWWATTTVWRATWAAHWW DGVBCABTGDWGCGKRRCSR AATTDRADYWVTGAWGMRDDDCSR Direction: Forward Position #: 5 Overlap #: 17 Alignment: AATTWWATTTVWRATWAAHWW--- ----DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif AATTDRADYWVTGAWGMRDDDCSR ATKAAWTTTTRMAABAHHTW AWKWWWWTYTVHRADRHVTWDCSR Direction: Forward Position #: 1 Overlap #: 20 Alignment: AATTDRADYWVTGAWGMRDDDCSR ATKAAWTTTTRMAABAHHTW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Original Motif Reverse Complement AWKWWWWTYTVHRADRHVTWDCSR TWTAATCTAWGAA AWTWTAATCTAWGAARHVTWDCSR Direction: Forward Position #: 3 Overlap #: 13 Alignment: AWKWWWWTYTVHRADRHVTWDCSR --TWTAATCTAWGAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 44 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh TFM3 Original Motif Reverse Complement DHACATTCTGH TWAAWTTVTGAAAAAHWW AAAAHWWTWAMATTCTGW Direction: Backward Position #: 8 Overlap #: 11 Alignment: DHACATTCTGH------- TWAAWTTVTGAAAAAHWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Original Motif AAAAHWWTWAMATTCTGW BCACCTGCABC BHACMTKCWGHAAAAHWW Direction: Backward Position #: 1 Overlap #: 11 Alignment: AAAAHWWTWAMATTCTGW -------BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Reverse Complement BHACMTKCWGHAAAAHWW TCAAAATKAWTTGT BHACMTKCWKCAAAATDAWTTGT Direction: Forward Position #: 10 Overlap #: 9 Alignment: BHACMTKCWGHAAAAHWW----- ---------TCAAAATKAWTTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Reverse Complement Reverse Complement ACAAWTDATTTTGRWGYARGTDV DDTATTATTTDH ACAAWWTATTWTKWWDYARGTDV Direction: Forward Position #: 5 Overlap #: 12 Alignment: ACAAWTDATTTTGRWGYARGTDV ----DDTATTATTTDH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement ACAAWWTATTWTKWWDYARGTDV TWVHWWWYTTTYTTTTTHTTTVWBH ACAATWDATTWTTTTBYADKTDWTTVWBH Direction: Forward Position #: 5 Overlap #: 19 Alignment: ACAAWWTATTWTKWWDYARGTDV------ ----TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif HDWVAAWDAYDTMVAAAAWAATDWATTGT ATKAAWTTTTRMAABAHHTW WHWDAAWTWTRHAMHAAAWWATDWATTGT Direction: Forward Position #: 1 Overlap #: 20 Alignment: HDWVAAWDAYDTMVAAAAWAATDWATTGT ATKAAWTTTTRMAABAHHTW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Reverse Complement Reverse Complement ACAATWDATWWTTTHYTHKAWAWTTDWHW WHTATTATTTDH ACAATWDATAWTWTTTHHKAWAWTTDWHW Direction: Forward Position #: 7 Overlap #: 12 Alignment: ACAATWDATWWTTTHYTHKAWAWTTDWHW ------WHTATTATTTDH----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Original Motif WHWDAAWTWTRHHAAAWAWTATDWATTGT AATTYDGAARTAWW WHWDAAWWTTHDGAAAWAWWATDWATTGT Direction: Forward Position #: 7 Overlap #: 14 Alignment: WHWDAAWTWTRHHAAAWAWTATDWATTGT ------AATTYDGAARTAWW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kCAGCCAATmr Original Motif Reverse Complement WHWDAAWWTTHDGAAAWAWWATDWATTGT MBATTGGCTGH CTGHHHATTGGWHWDAAWWTTHDGAAAWAWWAT Direction: Backward Position #: 5 Overlap #: 7 Alignment: WHWDAAWWTTHDGAAAWAWWATDWATTGT---- ----------------------MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 45 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww tkAAATAATAtw Original Motif Original Motif DBGTAAATAHD HDAAATAATAHW DHRWWAATAHDH Direction: Backward Position #: 1 Overlap #: 11 Alignment: -DBGTAAATAHD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Reverse Complement DHRWWAATAHDH DDTATTATTTDH DHTWWWATWTDH Direction: Forward Position #: 1 Overlap #: 12 Alignment: DHRWWAATAHDH DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement DHTWWWATWTDH TWVHWWWYTTTYTTTTTHTTTVWBH BWDWWWATWTTHTTTTTHTTTVWBH Direction: Forward Position #: 1 Overlap #: 12 Alignment: DHTWWWATWTDH------------- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Reverse Complement BWDWWWATWTTHTTTTTHTTTVWBH TTTDAWATATHATT TTTDAWATWTWDTTTTTHTTTVWBH Direction: Forward Position #: 1 Overlap #: 14 Alignment: BWDWWWATWTTHTTTTTHTTTVWBH TTTDAWATATHATT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Reverse Complement TTTDAWATWTWDTTTTTHTTTVWBH WWTAKTTCDKAATT TWTWDTWYWKAATTTTTHTTTVWBH Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTTDAWATWTWDTTTTTHTTTVWBH WWTAKTTCDKAATT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Reverse Complement HDWVAAAHAAAAATTRWKWADWAWA ABAAAAAAWHAAAAARAW HDWVAAAAAAAAATWAADAAWWAWA Direction: Forward Position #: 5 Overlap #: 18 Alignment: HDWVAAAHAAAAATTRWKWADWAWA ----ABAAAAAAWHAAAAARAW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement HDWVAAAAAAAAATWAADAAWWAWA TWAAWTTVTGAAAAAHWW HDWVAHAAAWWWATDAAAAAWWAWA Direction: Forward Position #: 6 Overlap #: 18 Alignment: HDWVAAAAAAAAATWAADAAWWAWA -----TWAAWTTVTGAAAAAHWW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Original Motif TWTWWTTTTTHATWWWTTTHTVWBH ATKAAWTTTTRMAABAHHTW ATTWWWTTTTDMAHWAHWTWHTVWBH Direction: Forward Position #: 2 Overlap #: 19 Alignment: -TWTWWTTTTTHATWWWTTTHTVWBH ATKAAWTTTTRMAABAHHTW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Original Motif Reverse Complement ATTWWWTTTTDMAHWAHWTWHTVWBH AWGKAAWTTTT ATKTAWWTTTTMAHWAHWTWHTVWBH Direction: Forward Position #: 1 Overlap #: 11 Alignment: ATTWWWTTTTDMAHWAHWTWHTVWBH AWGKAAWTTTT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Reverse Complement ATKTAWWTTTTMAHWAHWTWHTVWBH TWSTTTWAWTTTWT ATKTAWWBTTTWAWTWTWTWHTVWBH Direction: Forward Position #: 6 Overlap #: 14 Alignment: ATKTAWWTTTTMAHWAHWTWHTVWBH -----TWSTTTWAWTTTWT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 46 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 TFW3 Original Motif Original Motif GTCGCG CGGCYBCGCG GBCGCGCGGC Direction: Backward Position #: 1 Overlap #: 6 Alignment: ----GTCGCG CGGCYBCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Reverse Complement GBCGCGCGGC SGGTCACGTGACCS SGGTCRCGYGRCCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GBCGCGCGGC-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Original Motif SGGTCRCGYGRCCS GGMGGRGGCGGVGC GGVBSRSGCGGCSS Direction: Forward Position #: 1 Overlap #: 14 Alignment: SGGTCRCGYGRCCS GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Reverse Complement Reverse Complement SSGCCGCSMSBVCC GCVGCGGCBCCG SSGCCGCGVCBCCS Direction: Forward Position #: 3 Overlap #: 12 Alignment: SSGCCGCSMSBVCC --GCVGCGGCBCCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Reverse Complement Original Motif SGGBGVCGCGGCSS SCGCGCGG SSGCGCSGCGGCSS Direction: Forward Position #: 1 Overlap #: 8 Alignment: SGGBGVCGCGGCSS SCGCGCGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Reverse Complement Original Motif SSGCCGCSGCGCSS HSCACGTGGC VSSMCGYGGCGCSS Direction: Forward Position #: 1 Overlap #: 10 Alignment: SSGCCGCSGCGCSS HSCACGTGGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Original Motif SSGCGCCKCGYSSV HVGCCCCGCCCCBB SSSBGCCSCGCCCCBB Direction: Forward Position #: 3 Overlap #: 12 Alignment: SSGCGCCKCGYSSV-- --HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Reverse Complement Original Motif BBGGGGCGSGGCBSSS GGCGGGGC GGCGGGGCGSGGCBSSS Direction: Forward Position #: 2 Overlap #: 7 Alignment: -BBGGGGCGSGGCBSSS GGCGGGGC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement GGCGGGGCGSGGCBSSS BBGGGGCGGGGCGGB GGCGGGGSGCGGSGCSBB Direction: Forward Position #: 4 Overlap #: 14 Alignment: GGCGGGGCGSGGCBSSS- ---BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Reverse Complement GGCGGGGSGCGGSGCSBB MSGGGGCGGGGYSG GGCVSGGGGCGGGGCSGB Direction: Forward Position #: 4 Overlap #: 14 Alignment: GGCGGGGSGCGGSGCSBB ---MSGGGGCGGGGYSG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 47 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 csGCCCCGCCCCsc Reverse Complement Original Motif CCGCGCGS HVGCCCCGCCCCBB HCSSCSCGCCCCBB Direction: Forward Position #: 2 Overlap #: 8 Alignment: -CCGCGCGS----- HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif HCSSCSCGCCCCBB BCCGCCCCGCCCCBB HCSSCGCSCCSCCCCBB Direction: Forward Position #: 3 Overlap #: 12 Alignment: HCSSCSCGCCCCBB--- --BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif HCSSCGCSCCSCCCCBB CSKCCCCGCCCCSY HCSCCGCCCCGCCCCSB Direction: Forward Position #: 4 Overlap #: 14 Alignment: HCSSCGCSCCSCCCCBB ---CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Reverse Complement Original Motif VSGGGGCGGGGCGGSGD HSCACGTGGC VSSRSGYGGSGCGGSGD Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSGGGGCGGGGCGGSGD HSCACGTGGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Original Motif VSSRSGYGGSGCGGSGD VGCACGTGGH VSCACGYGGBGCGGSGD Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSSRSGYGGSGCGGSGD VGCACGTGGH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Reverse Complement Reverse Complement HCSCCGCBCCMCGTGSV GCVCCGCCMCCYCC SCVCCGCCCCMCSYGSV Direction: Forward Position #: 1 Overlap #: 14 Alignment: HCSCCGCBCCMCGTGSV GCVCCGCCMCCYCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF1 Original Motif Reverse Complement SCVCCGCCCCMCSYGSV GCVGCGGCBCCG GCVSCGSCBCCBSYGSV Direction: Forward Position #: 1 Overlap #: 12 Alignment: SCVCCGCCCCMCSYGSV GCVGCGGCBCCG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFAP2A Combined Motif Reverse Complement Reverse Complement VSCKSBGGBGSCGSVGC SCMVBBGGC VSCBSVVGBGGCGSVGC Direction: Forward Position #: 4 Overlap #: 9 Alignment: VSCKSBGGBGSCGSVGC ---SCMVBBGGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Original Motif Reverse Complement VSCBSVVGBGGCGSVGC GGGGGYGGGG VGSGSBGGGGGCGSVGC Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCBSVVGBGGCGSVGC GGGGGYGGGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement GCVSCGCCCCCBSCSCV VAGGCCBBGGCVBB GCVSMGSCCCCGSCSVV Direction: Forward Position #: 4 Overlap #: 14 Alignment: GCVSCGCCCCCBSCSCV ---VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 48 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 TFF1 Original Motif Original Motif CGGCYBCGCG CGGVGCCGCVGC GCCGGCKCCGCG Direction: Backward Position #: 3 Overlap #: 10 Alignment: CGGCYBCGCG-- CGGVGCCGCVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Reverse Complement Original Motif CGCGGYGCCGGC HGCGTGGGCGK HGCGKSGSCGGC Direction: Forward Position #: 1 Overlap #: 11 Alignment: CGCGGYGCCGGC HGCGTGGGCGK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Original Motif GCCGSCSRCGCD GGMGGRGGCGGVGC GCSGVSSRSGCGGVGC Direction: Forward Position #: 3 Overlap #: 10 Alignment: GCCGSCSRCGCD---- --GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif GCSGVSSRSGCGGVGC DGVBCABTGDWGCGKRRCSR GCSGRVBVVGYGRDGCGKRRCSR Direction: Forward Position #: 4 Overlap #: 13 Alignment: GCSGVSSRSGCGGVGC------- ---DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Reverse Complement GCSGRVBVVGYGRDGCGKRRCSR MSGGGGCGGGGYSG GCSGVBGGGGCGGGGCGKRRCSR Direction: Forward Position #: 5 Overlap #: 14 Alignment: GCSGRVBVVGYGRDGCGKRRCSR ----MSGGGGCGGGGYSG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Reverse Complement GCSGVBGGGGCGGGGCGKRRCSR BBGGGGCGGGGCVD GCSGVBGGGGCGGGGCGKRRCSR Direction: Forward Position #: 5 Overlap #: 14 Alignment: GCSGVBGGGGCGGGGCGKRRCSR ----BBGGGGCGGGGCVD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement GCSGVBGGGGCGGGGCGKRRCSR BBGGGGCGGGGCGGB GCSGVBGGGGCGGGGCGGVRCSR Direction: Forward Position #: 5 Overlap #: 15 Alignment: GCSGVBGGGGCGGGGCGKRRCSR ----BBGGGGCGGGGCGGB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Original Motif GCSGVBGGGGCGGGGCGGVRCSR BBVGCCBVGGCCTV GCSGBCGGGGCSKGGCGGVRCSR Direction: Forward Position #: 1 Overlap #: 14 Alignment: GCSGVBGGGGCGGGGCGGVRCSR BBVGCCBVGGCCTV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement GCSGBCGGGGCSKGGCGGVRCSR KKKAGGDGGAKKMGBBGKMG GBBDBSDGGGCSDGGCGKVGCSR Direction: Forward Position #: 1 Overlap #: 20 Alignment: GCSGBCGGGGCSKGGCGGVRCSR KKKAGGDGGAKKMGBBGKMG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Reverse Complement MSGCBYCGCCDSGCCCHSBHBBC CHCCBCCKMCTCCKCM CVSCBCCKCCDCSBCCHSBHBBC Direction: Forward Position #: 1 Overlap #: 16 Alignment: MSGCBYCGCCDSGCCCHSBHBBC CHCCBCCKMCTCCKCM------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 49 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 TFF11 Original Motif Original Motif CGGVGCCGCVGC GGMGGRGGCGGVGC GGVGGVGSCGSVGC Direction: Forward Position #: 3 Overlap #: 12 Alignment: --CGGVGCCGCVGC GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Reverse Complement GGVGGVGSCGSVGC BBGGGGCGGGGCVD GGVGGGGGCGGGGCVD Direction: Forward Position #: 3 Overlap #: 12 Alignment: GGVGGVGSCGSVGC-- --BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif HVGCCCCGCCCCCVCC CYYCBBCYYYTCCHCCTYYY CHSCVSCBCCBCCBCCTYYY Direction: Forward Position #: 1 Overlap #: 16 Alignment: HVGCCCCGCCCCCVCC---- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Reverse Complement KKKAGGBGGBGGBGSVGSDG BBGGGGCGGGGCGGB KKKDGGGGGCGGGGCGGBDG Direction: Forward Position #: 4 Overlap #: 15 Alignment: KKKAGGBGGBGGBGSVGSDG ---BBGGGGCGGGGCGGB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif KKKDGGGGGCGGGGCGGBDG DGVBCABTGDWGCGKRRCSR DGBDBRBKGVRGSGBRGCVG Direction: Forward Position #: 1 Overlap #: 20 Alignment: KKKDGGGGGCGGGGCGGBDG DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Reverse Complement CVGCMVCSCMVCYBMBHBCH CHCCBCCKMCTCCKCM CVGCMMCBCCDCCBCCBVMH Direction: Forward Position #: 4 Overlap #: 16 Alignment: CVGCMVCSCMVCYBMBHBCH ---CHCCBCCKMCTCCKCM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif CVGCMMCBCCDCCBCCBVMH CSKCCCCGCCCCSY CVGCVBCCCCGCCYCSBVMH Direction: Forward Position #: 4 Overlap #: 14 Alignment: CVGCMMCBCCDCCBCCBVMH ---CSKCCCCGCCCCSY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Reverse Complement CVGCVBCCCCGCCYCSBVMH SGGTCACGTGACCS CSGYCACSYSRCCBCSBVMH Direction: Forward Position #: 1 Overlap #: 14 Alignment: CVGCVBCCCCGCCYCSBVMH SGGTCACGTGACCS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement CSGYCACSYSRCCBCSBVMH VAGGCCBBGGCVBB CSGYCASGCCDCSSCSBVMH Direction: Forward Position #: 5 Overlap #: 14 Alignment: CSGYCACSYSRCCBCSBVMH ----VAGGCCBBGGCVBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Reverse Complement CSGYCASGCCDCSSCSBVMH CCCCCTTGGGCCCC CCCCSYHRGGCCHCSSCSBVMH Direction: Forward Position #: 3 Overlap #: 12 Alignment: --CSGYCASGCCDCSSCSBVMH CCCCCTTGGGCCCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 50 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 TFM2 Original Motif Original Motif GGMGGRGGCGGVGC RGRGGAGRRGGHGGDG DGGGAGGRGGVGGVGS Direction: Backward Position #: 3 Overlap #: 14 Alignment: GGMGGRGGCGGVGC-- RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif SCBCCVCCKCCTCCCH CYYCBBCYYYTCCHCCTYYY CCBCCVCCYCYYCCCCTYYY Direction: Forward Position #: 1 Overlap #: 16 Alignment: SCBCCVCCKCCTCCCH---- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Reverse Complement KKKAGGGGKKGMGGVGGBGG BBGGGGCGGGGCGGB KKKABSGGGGSGGGGSGBGG Direction: Forward Position #: 5 Overlap #: 15 Alignment: KKKAGGGGKKGMGGVGGBGG ----BBGGGGCGGGGCGGB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Original Motif KKKABSGGGGSGGGGSGBGG DGVBCABTGDWGCGKRRCSR DGVKBDVBGRRGSGDGGSSGBGG Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---KKKABSGGGGSGGGGSGBGG DGVBCABTGDWGCGKRRCSR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Reverse Complement Original Motif CCBCSSCCHCSCMMCVBDBYBCD HVGCCCCGCCCCBB CVGCCCCSCCCCBHCVBDBYBCD Direction: Forward Position #: 1 Overlap #: 14 Alignment: CCBCSSCCHCSCMMCVBDBYBCD HVGCCCCGCCCCBB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Reverse Complement HGVKBDVBGDBGGGGSGGGGCVG MSGGGGCGGGGYSG HGVKVBVKGGCGGGGCGGGGCVG Direction: Forward Position #: 5 Overlap #: 14 Alignment: HGVKBDVBGDBGGGGSGGGGCVG ----MSGGGGCGGGGYSG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 2 Original Motif Original Motif HGVKVBVKGGCGGGGCGGGGCVG RGRAGARRGARRAR DGVRVVRGGVVGRGGCGGGGCVG Direction: Forward Position #: 1 Overlap #: 14 Alignment: HGVKVBVKGGCGGGGCGGGGCVG RGRAGARRGARRAR--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Original Motif DGVRVVRGGVVGRGGCGGGGCVG GGGGCCCAAGGGGG DGVRGRGGSVVRRGGGGGGGCVG Direction: Forward Position #: 5 Overlap #: 14 Alignment: DGVRVVRGGVVGRGGCGGGGCVG ----GGGGCCCAAGGGGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Reverse Complement CVGCCCCCCCKKVVSCCMCKBCD VAGGCCBBGGCVBB CAGSCCCBSSBBVVSCCMCKBCD Direction: Forward Position #: 1 Overlap #: 14 Alignment: CVGCCCCCCCKKVVSCCMCKBCD VAGGCCBBGGCVBB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF1 Reverse Complement Original Motif DGVRGRGGSVVBBSSBGGGSCTG CGGVGCCGCVGC VGGVGSSGCVGCBSSBGGGSCTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: DGVRGRGGSVVBBSSBGGGSCTG CGGVGCCGCVGC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 51 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 TFM12 Reverse Complement Original Motif CHCCBCCKMCTCCKCM CYYCBBCYYYTCCHCCTYYY CHCCBSCBCCTCCBCCTYYY Direction: Forward Position #: 1 Overlap #: 16 Alignment: CHCCBCCKMCTCCKCM---- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Original Motif KKKAGGVGGAGGVGSVGGDG DGVBCABTGDWGCGKRRCSR DGBDVVVKGADGMGKVRSVG Direction: Forward Position #: 1 Overlap #: 20 Alignment: KKKAGGVGGAGGVGSVGGDG DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Reverse Complement CVSMBYCRCHTCYVVVDBCH TWVHWWWYTTTYTTTTTHTTTVWBH CVSMKHCDHHTYYDTBTBHTTHTTTVWBH Direction: Forward Position #: 5 Overlap #: 16 Alignment: CVSMBYCRCHTCYVVVDBCH--------- ----TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Reverse Complement HDWVAAAHAAHVABADMKAHDDGHRRSVG BBGGGGCGGGGCGGB GGCGGBHVRGRGCGGHDWVAAAHAAHVABADMKAH Direction: Backward Position #: 7 Overlap #: 9 Alignment: HDWVAAAHAAHVABADMKAHDDGHRRSVG------ --------------------BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 52 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 TFM11 Original Motif Reverse Complement WTKTTTTTHWTTTTTTBT TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWWBTTTTTDTTTDTTTBWBH Direction: Forward Position #: 6 Overlap #: 18 Alignment: -----WTKTTTTTHWTTTTTTBT-- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Original Motif HDWBAAADAAADAAAAAVWWWHBWA ATKAAWTTTTRMAABAHHTW ATDWDAWWHWAAAAHAAAWWWWHBWA Direction: Forward Position #: 2 Overlap #: 19 Alignment: -HDWBAAADAAADAAAAAVWWWHBWA ATKAAWTTTTRMAABAHHTW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif TWVHWWWWTTTHTTTTWHWWTDWDAT WWHTTTTTCABAAWTTWA TWHTTTWWYWTAHWTTWAWWTDWDAT Direction: Forward Position #: 1 Overlap #: 18 Alignment: TWVHWWWWTTTHTTTTWHWWTDWDAT WWHTTTTTCABAAWTTWA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Original Motif TWHTTTWWYWTAHWTTWAWWTDWDAT CYYCBBCYYYTCCHCCTYYY YWBHDBYHYHTMHHYYWHHYTDWDAT Direction: Forward Position #: 1 Overlap #: 20 Alignment: TWHTTTWWYWTAHWTTWAWWTDWDAT CYYCBBCYYYTCCHCCTYYY------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Reverse Complement ATDWDAMHDWMKHDRAHKHKVDHBWK MSGKKRCGCWDCABTGBBCD MSRBKAMRCWDHMBHGBVMKHKVDHBWK Direction: Forward Position #: 3 Overlap #: 18 Alignment: --ATDWDAMHDWMKHDRAHKHKVDHBWK MSGKKRCGCWDCABTGBBCD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Reverse Complement Reverse Complement YWBHDBYHYRBBCHBYDDWGKRTRVMSR TWSTTTWAWTTTWT YWVTTTTWHTDTHTBYDDWGKRTRVMSR Direction: Forward Position #: 1 Overlap #: 14 Alignment: YWBHDBYHYRBBCHBYDDWGKRTRVMSR TWSTTTWAWTTTWT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif YWVTTTTWHTDTHTBYDDWGKRTRVMSR AATHATATWTHAAA YWVTTTWWTDWTATHTVAARKRTRVMSR Direction: Forward Position #: 7 Overlap #: 14 Alignment: YWVTTTTWHTDTHTBYDDWGKRTRVMSR ------AATHATATWTHAAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Original Motif Original Motif YWVTTTWWTDWTATHTVAARKRTRVMSR RGRAGARRGARRAR YWVTTTARDADWRDVHVRARKRTRVMSR Direction: Forward Position #: 7 Overlap #: 14 Alignment: YWVTTTWWTDWTATHTVAARKRTRVMSR ------RGRAGARRGARRAR-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Reverse Complement YWVTTTARDADWRDVHVRARKRTRVMSR WWTAKTTCDKAATT WTTHTTTMDKAATWDVHVRARKRTRVMSR Direction: Forward Position #: 2 Overlap #: 13 Alignment: -YWVTTTARDADWRDVHVRARKRTRVMSR WWTAKTTCDKAATT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Reverse Complement Original Motif MSRBKAMRKTKVHVDWATTRDRAAAHAAW AAATRWTAAAATCA AAAATCAAAWTRWTMSRBKAMRKTKVHVDWATTRDR Direction: Backward Position #: 8 Overlap #: 7 Alignment: MSRBKAMRKTKVHVDWATTRDRAAAHAAW------- ----------------------AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 53 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 TFM13 Reverse Complement Original Motif TWAAWTTVTGAAAAAHWW ATKAAWTTTTRMAABAHHTW ATWAAWTTHTGAAAWAHWWW Direction: Forward Position #: 2 Overlap #: 18 Alignment: -TWAAWTTVTGAAAAAHWW- ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Original Motif ATWAAWTTHTGAAAWAHWWW HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAWDAAWWWHWRAAAWAHHWA Direction: Forward Position #: 6 Overlap #: 20 Alignment: -----ATWAAWTTHTGAAAWAHWWW HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement HDWVAAWDAAWWWHWRAAAWAHHWA ABAAAAAAWHAAAAARAW HDWVADWAAAAAWHARAAADAWHWA Direction: Forward Position #: 5 Overlap #: 18 Alignment: HDWVAAWDAAWWWHWRAAAWAHHWA ----ABAAAAAAWHAAAAARAW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif HDWVADWAAAAAWHARAAADAWHWA DGVBCABTGDWGCGKRRCSR HDWVADRDDHAHHVAARMRDADCDR Direction: Forward Position #: 6 Overlap #: 20 Alignment: HDWVADWAAAAAWHARAAADAWHWA -----DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement KDGDTDKRMTTVHHTHDDKDTVWBH TWSTTTWAWTTTWT KDGDTWDVYTTHAHTTTHTDTVWBH Direction: Forward Position #: 6 Overlap #: 14 Alignment: KDGDTDKRMTTVHHTHDDKDTVWBH -----TWSTTTWAWTTTWT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Reverse Complement KDGDTWDVYTTHAHTTTHTDTVWBH WWTAKTTCDKAATT KDGDTWWTWTTTMDTAWTTDTVWBH Direction: Forward Position #: 6 Overlap #: 14 Alignment: KDGDTWDVYTTHAHTTTHTDTVWBH -----WWTAKTTCDKAATT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Reverse Complement Original Motif HDWVADAAWTADRAAAWAWWADCDR AATHATATWTHAAA AAWHAWAWWTVARAAAWAWWADCDR Direction: Forward Position #: 1 Overlap #: 14 Alignment: HDWVADAAWTADRAAAWAWWADCDR AATHATATWTHAAA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Original Motif Original Motif AAWHAWAWWTVARAAAWAWWADCDR RGRAGARRGARRAR AAWHADRWAKARRRARDARWADCDR Direction: Forward Position #: 6 Overlap #: 14 Alignment: AAWHAWAWWTVARAAAWAWWADCDR -----RGRAGARRGARRAR------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Original Motif Reverse Complement AAWHADRWAKARRRARDARWADCDR TWTAATCTAWGAA DRWAKARRRARDARWADCDRAWGAAAAWHADRWAKARRRARDARW Direction: Backward Position #: 21 Overlap #: 5 Alignment: --------AAWHADRWAKARRRARDARWADCDR --------------------TWTAATCTAWGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 54 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Pax5 Original Motif Reverse Complement CYYCBBCYYYTCCHCCTYYY MSGKKRCGCWDCABTGBBCD CBSBBVCBCHTCMBYBBBCB Direction: Forward Position #: 1 Overlap #: 20 Alignment: CYYCBBCYYYTCCHCCTYYY MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement CBSBBVCBCHTCMBYBBBCB TWVHWWWYTTTYTTTTTHTTTVWBH CBSBKDCHYDHYHTTBTBHTTHTTTVWBH Direction: Forward Position #: 5 Overlap #: 16 Alignment: CBSBBVCBCHTCMBYBBBCB--------- ----TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif CBSBKDCHYDHYHTTBTBHTTHTTTVWBH WTKTTTTTHWTTTTTTBT CBSBKWHBTTTYTDTTTDTTTBTTTVWBH Direction: Forward Position #: 6 Overlap #: 18 Alignment: CBSBKDCHYDHYHTTBTBHTTHTTTVWBH -----WTKTTTTTHWTTTTTTBT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Reverse Complement CBSBKWHBTTTYTDTTTDTTTBTTTVWBH CHCCBCCKMCTCCKCM CHSCBBCKHHTCYKHHTDTTTBTTTVWBH Direction: Forward Position #: 1 Overlap #: 16 Alignment: CBSBKWHBTTTYTDTTTDTTTBTTTVWBH CHCCBCCKMCTCCKCM------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Original Motif CHSCBBCKHHTCYKHHTDTTTBTTTVWBH BCCGCCCCGCCCCBB BCCGCCCCGCCYCBBHHTDTTTBTTTVWBH Direction: Forward Position #: 2 Overlap #: 14 Alignment: -CHSCBBCKHHTCYKHHTDTTTBTTTVWBH BCCGCCCCGCCCCBB--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Reverse Complement Original Motif HDWVAAAVAAADADDVBGKGGCGGGGCGGB RGRAGARRGARRAR HRRVARARRRARRDRVBGKGGCGGGGCGGB Direction: Forward Position #: 2 Overlap #: 14 Alignment: HDWVAAAVAAADADDVBGKGGCGGGGCGGB -RGRAGARRGARRAR--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif BCCGCCCCGCCYCBBMDKKTKKMTKTVKKH CSKCCCCGCCCCSY BCBSCCCSSCCCCBBMDKKTKKMTKTVKKH Direction: Forward Position #: 1 Overlap #: 14 Alignment: BCCGCCCCGCCYCBBMDKKTKKMTKTVKKH CSKCCCCGCCCCSY---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Original Motif BCBSCCCSSCCCCBBMDKKTKKMTKTVKKH HVGCCCCGCCCCBB BCBSCCCSGCCCCGCCBBBHKKMTKTVKKH Direction: Forward Position #: 7 Overlap #: 14 Alignment: BCBSCCCSSCCCCBBMDKKTKKMTKTVKKH ------HVGCCCCGCCCCBB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement BCBSCCCSGCCCCGCCBBBHKKMTKTVKKH GCVCCGCCMCCYCC SCVCCSCCVCCCCSCCBBBHKKMTKTVKKH Direction: Forward Position #: 1 Overlap #: 14 Alignment: BCBSCCCSGCCCCGCCBBBHKKMTKTVKKH GCVCCGCCMCCYCC---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Reverse Complement SCVCCSCCVCCCCSCCBBBHKKMTKTVKKH CCCCCTTGGGCCCC SCCCCCCYHVSSCCCCBBBHKKMTKTVKKH Direction: Forward Position #: 3 Overlap #: 14 Alignment: SCVCCSCCVCCCCSCCBBBHKKMTKTVKKH --CCCCCTTGGGCCCC-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 55 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 TFM11 Reverse Complement Reverse Complement WAHHTVTTYKAAAAWTTRAT TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWAHYTDTTTKWWWWTTTDWTH Direction: Forward Position #: 5 Overlap #: 20 Alignment: ----WAHHTVTTYKAAAAWTTRAT- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement TWVHWAHYTDTTTKWWWWTTTDWTH TWAAWTTVTGAAAAAHWW TWAAWWTHTKWWDWAWWWTTTDWTH Direction: Forward Position #: 1 Overlap #: 18 Alignment: TWVHWAHYTDTTTKWWWWTTTDWTH TWAAWTTVTGAAAAAHWW------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif TWAAWWTHTKWWDWAWWWTTTDWTH WTKTTTTTHWTTTTTTBT TWAAWTTTTTTTDWWTWTTTTDWTH Direction: Forward Position #: 5 Overlap #: 18 Alignment: TWAAWWTHTKWWDWAWWWTTTDWTH ----WTKTTTTTHWTTTTTTBT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif HAWDAAAAWAWWDAAAAAAAWTTWA DGVBCABTGDWGCGKRRCSR DRHDHAHWDAWGHRDRAMVRWTTWA Direction: Forward Position #: 1 Overlap #: 20 Alignment: HAWDAAAAWAWWDAAAAAAAWTTWA DGVBCABTGDWGCGKRRCSR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Reverse Complement DRHDHAHWDAWGHRDRAMVRWTTWA TTTDAWATATHATT TDTDAAATAWWRHDDRAMVRWTTWA Direction: Forward Position #: 1 Overlap #: 14 Alignment: DRHDHAHWDAWGHRDRAMVRWTTWA TTTDAWATATHATT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Reverse Complement Reverse Complement TWAAWKBRTKDDHKWWTATTTHADA TWSTTTWAWTTTWT TWVWTTTDTTWWWTWWTATTTHADA Direction: Forward Position #: 1 Overlap #: 14 Alignment: TWAAWKBRTKDDHKWWTATTTHADA TWSTTTWAWTTTWT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Original Motif TDTDAAATAWWAWWWAADAAAWBWA AATTYDGAARTAWW TDTDAAATTYWRAARWAWWAAWBWA Direction: Forward Position #: 6 Overlap #: 14 Alignment: TDTDAAATAWWAWWWAADAAAWBWA -----AATTYDGAARTAWW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Original Motif Original Motif TDTDAAATTYWRAARWAWWAAWBWA TTCWTAGATTAWA TTCWTARATTAWAAARWAWWAAWBWA Direction: Forward Position #: 2 Overlap #: 12 Alignment: -TDTDAAATTYWRAARWAWWAAWBWA TTCWTAGATTAWA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Reverse Complement TWVWTTWWTWKTTTWTAATMTAWGAA TCAAAATKAWTTGT TCWAAATKAWTTGTTTWTAATMTAWGAA Direction: Forward Position #: 3 Overlap #: 12 Alignment: --TWVWTTWWTWKTTTWTAATMTAWGAA TCAAAATKAWTTGT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Reverse Complement Reverse Complement TTCWTARATTAWAAACAAWTRATTTWGA WHTATTATTTDH TTCWWATATTAWWWAHAAWTRATTTWGA Direction: Forward Position #: 5 Overlap #: 12 Alignment: TTCWTARATTAWAAACAAWTRATTTWGA ----WHTATTATTTDH------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 56 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 TFM13 Reverse Complement Reverse Complement TWVHWWWYTTTYTTTTTHTTTVWBH WAHHTVTTYKAAAAWTTRAT TWHHTDTTTTWHWWTTTDWTTVWBH Direction: Forward Position #: 1 Overlap #: 20 Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH WAHHTVTTYKAAAAWTTRAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif TWHHTDTTTTWHWWTTTDWTTVWBH CYYCBBCYYYTCCHCCTYYY YWBHBBYYYTTCHHHYTBHYTVWBH Direction: Forward Position #: 1 Overlap #: 20 Alignment: TWHHTDTTTTWHWWTTTDWTTVWBH CYYCBBCYYYTCCHCCTYYY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement YWBHBBYYYTTCHHHYTBHYTVWBH MSGKKRCGCWDCABTGBBCD CVVBKDCBCTTCHBHBHBMBTVWBH Direction: Forward Position #: 1 Overlap #: 20 Alignment: YWBHBBYYYTTCHHHYTBHYTVWBH MSGKKRCGCWDCABTGBBCD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Reverse Complement HDWVAVRVHBHVHGAAGBGDRVVVG ABAAAAAAWHAAAAARAW HDWVADRAADAAHDAARHRDAHVVG Direction: Forward Position #: 5 Overlap #: 18 Alignment: HDWVAVRVHBHVHGAAGBGDRVVVG ----ABAAAAAAWHAAAAARAW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement HDWVADRAADAAHDAARHRDAHVVG TWAAWTTVTGAAAAAHWW THAVWTWVWGAAADADWWRDAHVVG Direction: Forward Position #: 1 Overlap #: 18 Alignment: HDWVADRAADAAHDAARHRDAHVVG TWAAWTTVTGAAAAAHWW------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Reverse Complement Reverse Complement CVVHTHKWWDTDTTTCWBWAWBTHA TWSTTTWAWTTTWT HDVTTTTWWTTTWTTCWBWAWBTHA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CVVHTHKWWDTDTTTCWBWAWBTHA TWSTTTWAWTTTWT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 2 Original Motif Reverse Complement HDVTTTTWWTTTWTTCWBWAWBTHA MTMMTCMMTCTKCK MDMHTHHMTYTTMTTCWBWAWBTHA Direction: Forward Position #: 1 Overlap #: 14 Alignment: HDVTTTTWWTTTWTTCWBWAWBTHA MTMMTCMMTCTKCK----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement THAVWTWVWGAARAAKAYHDADRDR TTTDAWATATHATT THAVWTTTDAAATAWDATTDADRDR Direction: Forward Position #: 6 Overlap #: 14 Alignment: THAVWTWVWGAARAAKAYHDADRDR -----TTTDAWATATHATT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Original Motif THAVWTTTDAAATAWDATTDADRDR AATTYDGAARTAWW THAVAWTTHARAAAWAAWTDADRDR Direction: Forward Position #: 5 Overlap #: 14 Alignment: THAVWTTTDAAATAWDATTDADRDR ----AATTYDGAARTAWW------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Reverse Complement Reverse Complement MDMHTHAWTTWTTTMTHAAWTBTHA DDTATTATTTDH HDHATTATTTHDTTMTHAAWTBTHA Direction: Forward Position #: 1 Overlap #: 12 Alignment: MDMHTHAWTTWTTTMTHAAWTBTHA DDTATTATTTDH------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-20-2016 14:26:06 Runtime: 707.569 seconds MOTIFSIM is written by Ngoc Tam L. 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