**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.1 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 5 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Phylogenetic tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # DREME_DM230.txt 1 1 MEME_DM230.txt 20 2 PScanChIP_DM230.txt 14 3 RSAT_peak-motifs_DM230.txt 10 4 W-ChIPMotifs_DM230.txt 11 5 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ************************************************************ Combined Motifs for Top Global Significant Motif ID 45 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww TFM11 Reverse Complement Reverse Complement DHTATTTACBD TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWWYTTTYTTTTTATTTAHBH Direction: Forward Position #: 15 Overlap #: 11 Alignment: --------------DHTATTTACBD TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif HVDTAAATAAAAAMAAAMWWWHBWA AATHATATWTHAAA HVAWWAATAWWTVAAAAMWWWHBWA Direction: Forward Position #: 3 Overlap #: 14 Alignment: HVDTAAATAAAAAMAAAMWWWHBWA --AATHATATWTHAAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Reverse Complement TWVHWWWYTTTTBAWWTATTWWTBH WWTAKTTCDKAATT TWDWTWDTTYTTAATWTATTWWTBH Direction: Forward Position #: 3 Overlap #: 14 Alignment: TWVHWWWYTTTTBAWWTATTWWTBH --WWTAKTTCDKAATT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Reverse Complement Reverse Complement HVAWWAATAWATTAAMAADWAWDWA ABAAAAAAWHAAAAARAW WBAAAAAWAWAWAAAMAADWAWDWA Direction: Forward Position #: 1 Overlap #: 18 Alignment: HVAWWAATAWATTAAMAADWAWDWA ABAAAAAAWHAAAAARAW------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif WBAAAAAWAWAWAAAMAADWAWDWA WWHTTTTTCABAAWTTWA WBAAAWAWWWWWWMAVAADTWWAWA Direction: Forward Position #: 6 Overlap #: 18 Alignment: WBAAAAAWAWAWAAAMAADWAWDWA -----WWHTTTTTCABAAWTTWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif TWTWWADTTVTRWWWWWWTWTTTBW ATKAAWTTTTRMAABAHHTW HTTWWWWTTDDVAADAWHTWTTTBW Direction: Forward Position #: 1 Overlap #: 20 Alignment: TWTWWADTTVTRWWWWWWTWTTTBW ATKAAWTTTTRMAABAHHTW----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Original Motif Reverse Complement HTTWWWWTTDDVAADAWHTWTTTBW AWGKAAWTTTT WWKWAAWTTTTVAADAWHTWTTTBW Direction: Forward Position #: 1 Overlap #: 11 Alignment: HTTWWWWTTDDVAADAWHTWTTTBW AWGKAAWTTTT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Original Motif WBAAAWAHWTDTTBAAAAWTTWYWW AWAAAWTWAAASWA WBAWAWAWTWAWWBWAAAWTTWYWW Direction: Forward Position #: 3 Overlap #: 14 Alignment: WBAAAWAHWTDTTBAAAAWTTWYWW --AWAAAWTWAAASWA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Reverse Complement WWKWAAWTTTWBWWTWAWTWTWTBW AAATTKTATTTAWT AAATTKWATTTWWTWWTWAWTWTWTBW Direction: Forward Position #: 3 Overlap #: 12 Alignment: --WWKWAAWTTTWBWWTWAWTWTWTBW AAATTKTATTTAWT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif WBAWAWAWTWAWWAWWAAATWRAATTT DGVBCABTGDWGCGKRRCSR WDRHDHAHTDAWRMRTAAMBARAATTT Direction: Forward Position #: 2 Overlap #: 20 Alignment: WBAWAWAWTWAWWAWWAAATWRAATTT -DGVBCABTGDWGCGKRRCSR------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 24 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Motif 7 Original Motif Original Motif CCCCKCCCCC CSKCCCCGCCCCSY YCCCCGCCCCCCSK Direction: Backward Position #: 2 Overlap #: 10 Alignment: ---CCCCKCCCCC- CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Original Motif YCCCCGCCCCCCSK HVGCCCCGCCCCBB YCSCCSCSCCCCSB Direction: Forward Position #: 1 Overlap #: 14 Alignment: YCCCCGCCCCCCSK HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Reverse Complement BSGGGGSGSGGSGK BBGGGGCGGGGCGGB BSGSGGGGCGGGGBGGB Direction: Forward Position #: 3 Overlap #: 12 Alignment: BSGGGGSGSGGSGK--- --BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Original Motif BSGSGGGGCGGGGBGGB GGMGGRGGCGGVGC SGVGGGGGCGGGGCGGB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BSGSGGGGCGGGGBGGB GGMGGRGGCGGVGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif BCCGCCCCGCCCCCVCS CYYCBBCYYYTCCHCCTYYY BCCCCCCCGCCCCBCCBCCTYYY Direction: Forward Position #: 4 Overlap #: 14 Alignment: BCCGCCCCGCCCCCVCS------ ---CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement BCCCCCCCGCCCCBCCBCCTYYY CHCCBCCKMCTCCKCM BCCCCBCCKCCYCCBCMCCTYYY Direction: Forward Position #: 2 Overlap #: 16 Alignment: BCCCCCCCGCCCCBCCBCCTYYY -CHCCBCCKMCTCCKCM------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF1 Original Motif Reverse Complement BCCCCBCCKCCYCCBCMCCTYYY GCVGCGGCBCCG GCVSCBSCBCCBCCBCMCCTYYY Direction: Forward Position #: 1 Overlap #: 12 Alignment: BCCCCBCCKCCYCCBCMCCTYYY GCVGCGGCBCCG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Reverse Complement Original Motif KKKAGGRGVGGBGGVGSBGSVGC RGRAGARRGARRAR KKDRGRGRRGGHGGAGSBGSVGC Direction: Forward Position #: 3 Overlap #: 14 Alignment: KKKAGGRGVGGBGGVGSBGSVGC --RGRAGARRGARRAR------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Reverse Complement Reverse Complement GCVSCBSCTCCHCCMMCKCMHYY CGCGBMGCCG CGCGSMGSCGCCHCCMMCKCMHYY Direction: Forward Position #: 2 Overlap #: 9 Alignment: -GCVSCBSCTCCHCCMMCKCMHYY CGCGBMGCCG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Original Motif Original Motif CGCGSMGSCGCCHCCMMCKCMHYY BCACCTGCABC CGCBBASCYGCMBCCMMCKCMHYY Direction: Forward Position #: 4 Overlap #: 11 Alignment: CGCGSMGSCGCCHCCMMCKCMHYY ---BCACCTGCABC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 32 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ArntAhr csGCCCCGCCCCsc Reverse Complement Original Motif CACGCM HVGCCCCGCCCCBB CCBBCMCGCCHVGC Direction: Backward Position #: 5 Overlap #: 6 Alignment: ----CACGCM---- HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Reverse Complement Reverse Complement GCVDGGCGYGBBGG GCCCCGCC GCCCSGCSYGBBGG Direction: Forward Position #: 1 Overlap #: 8 Alignment: GCVDGGCGYGBBGG GCCCCGCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Original Motif GCCCSGCSYGBBGG SGGTCACGTGACCS SGGTCACGTGMCCSGCSYGBBGG Direction: Forward Position #: 10 Overlap #: 5 Alignment: ---------GCCCSGCSYGBBGG SGGTCACGTGACCS--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Original Motif CCBBCMSGCSGGRCACGTGACCS BCCGCCCCGCCCCBB CCBBCMSGCCSSGCMCSTGACCS Direction: Forward Position #: 5 Overlap #: 15 Alignment: CCBBCMSGCSGGRCACGTGACCS ----BCCGCCCCGCCCCBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Original Motif Original Motif CCBBCMSGCCSSGCMCSTGACCS CSKCCCCGCCCCSY CCKCCCCGCCCCGCMCSTGACCS Direction: Forward Position #: 1 Overlap #: 14 Alignment: CCBBCMSGCCSSGCMCSTGACCS CSKCCCCGCCCCSY--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Original Motif Original Motif CCKCCCCGCCCCGCMCSTGACCS SCGCGCGG CCGCSCSGCCCCGCMCSTGACCS Direction: Forward Position #: 1 Overlap #: 8 Alignment: CCKCCCCGCCCCGCMCSTGACCS SCGCGCGG--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Original Motif Original Motif CCGCSCSGCCCCGCMCSTGACCS CGGCYBCGCG CSGCBCCGCSCCGCMCSTGACCS Direction: Forward Position #: 1 Overlap #: 10 Alignment: CCGCSCSGCCCCGCMCSTGACCS CGGCYBCGCG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Reverse Complement Reverse Complement SGGTCASGYGCGGSGCGGBGCSG GBTGCAGGTGB SSKKCAGGTGBGGSGCGGBGCSG Direction: Forward Position #: 1 Overlap #: 11 Alignment: SGGTCASGYGCGGSGCGGBGCSG GBTGCAGGTGB------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement CSGCBCCGCSCCBCACCTGYRSS GCVCCGCCMCCYCC CSGCBCCGCCCCVYMCCTGYRSS Direction: Forward Position #: 3 Overlap #: 14 Alignment: CSGCBCCGCSCCBCACCTGYRSS --GCVCCGCCMCCYCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW1 Original Motif Reverse Complement CSGCBCCGCCCCVYMCCTGYRSS CGCGAC CGSSVCCGCCCCVYMCCTGYRSS Direction: Forward Position #: 1 Overlap #: 6 Alignment: CSGCBCCGCCCCVYMCCTGYRSS CGCGAC----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 1 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 csGCCCCGCCCCsc Original Motif Reverse Complement GGCGGGGC BBGGGGCGGGGCVD VDGGCGGGGCBBGG Direction: Backward Position #: 3 Overlap #: 8 Alignment: ----GGCGGGGC-- BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Reverse Complement VDGGCGGGGCBBGG BBGGGGCGGGGCGGB VBGGSGSGGSGCGGB Direction: Forward Position #: 1 Overlap #: 14 Alignment: VDGGCGGGGCBBGG- BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Original Motif Reverse Complement VBGGSGSGGSGCGGB MSGGGGCGGGGYSG VBGGGGCGGGGCGGB Direction: Forward Position #: 1 Overlap #: 14 Alignment: VBGGSGSGGSGCGGB MSGGGGCGGGGYSG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Reverse Complement Reverse Complement BCCGCCCCGCCCCBB GCVCCGCCMCCYCC SCCSCSCCSCCCCCB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BCCGCCCCGCCCCBB GCVCCGCCMCCYCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Reverse Complement Original Motif VGGGGGSGGSGSGGS DGGGYGKGGC DGGGBGBGGCGSGGS Direction: Forward Position #: 1 Overlap #: 10 Alignment: VGGGGGSGGSGSGGS DGGGYGKGGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif SCCSCGCCBCBCCCD BBVGCCBVGGCCTV SCVSCGCCBCGSCCTV Direction: Forward Position #: 3 Overlap #: 13 Alignment: SCCSCGCCBCBCCCD- --BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Reverse Complement Reverse Complement VAGGSCGBGGCGSVGS CGCGBMGCCG CRSGSVGCSGCGSVGS Direction: Forward Position #: 1 Overlap #: 10 Alignment: VAGGSCGBGGCGSVGS CGCGBMGCCG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF1 Reverse Complement Reverse Complement SCVSCGCSGCVSCSMG GCVGCGGCBCCG GCVGCGSCBCCBCSMG Direction: Forward Position #: 1 Overlap #: 12 Alignment: SCVSCGCSGCVSCSMG GCVGCGGCBCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Reverse Complement CRSGBGGBGSCGCVGC MSGKKRCGCWDCABTGBBCD MSGBGVSGCDBCRVDGCBCD Direction: Forward Position #: 2 Overlap #: 16 Alignment: -CRSGBGGBGSCGCVGC--- MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Original Motif MSGBGVSGCDBCRVDGCBCD HGCGTGGGCGK HSSGKGGGCGKCRVDGCBCD Direction: Forward Position #: 1 Overlap #: 11 Alignment: MSGBGVSGCDBCRVDGCBCD HGCGTGGGCGK--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Reverse Complement HSSGKGGGCGKCRVDGCBCD CHCCBCCKMCTCCKCM CHCMBSSKVSKCSKCVVDGCBCD Direction: Forward Position #: 4 Overlap #: 13 Alignment: ---HSSGKGGGCGKCRVDGCBCD CHCCBCCKMCTCCKCM------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 46 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 sSGTCACGTGACSs Original Motif Original Motif GTCGCG SGGTCACGTGACCS TGACCSGTCRCGSG Direction: Backward Position #: 7 Overlap #: 6 Alignment: --GTCGCG------ SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Original Motif TGACCSGTCRCGSG HSCACGTGGC CSSWCGYGGSTGAC Direction: Backward Position #: 1 Overlap #: 10 Alignment: TGACCSGTCRCGSG ----HSCACGTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Reverse Complement CSSWCGYGGSTGAC BBGGGGCGGGGCVD BBSGGGCGSGGCTGAC Direction: Forward Position #: 3 Overlap #: 12 Alignment: --CSSWCGYGGSTGAC BBGGGGCGGGGCVD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Original Motif Original Motif BBSGGGCGSGGCTGAC GGCGGGGC GGCGGGGCGSGGCTGAC Direction: Forward Position #: 2 Overlap #: 7 Alignment: -BBSGGGCGSGGCTGAC GGCGGGGC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Original Motif GTCAGCCSCGCCCCGCC BCCGCCCCGCCCCBB GTCVSCSCCSCSCCSCCB Direction: Forward Position #: 4 Overlap #: 14 Alignment: GTCAGCCSCGCCCCGCC- ---BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif GTCVSCSCCSCSCCSCCB CSKCCCCGCCCCSY GTCHSBCCCCSCCCCCYB Direction: Forward Position #: 4 Overlap #: 14 Alignment: GTCVSCSCCSCSCCSCCB ---CSKCCCCGCCCCSY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Reverse Complement Original Motif BKGGGGGSGGGGBSDGAC VGCACGTGGH BKGVGSRCGKGGBSDGAC Direction: Forward Position #: 4 Overlap #: 10 Alignment: BKGGGGGSGGGGBSDGAC ---VGCACGTGGH----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif E2F1 Reverse Complement Original Motif GTCHSBCCYCGKSCVCYB TTTSGCGC TKTSSCGCCYCGKSCVCYB Direction: Forward Position #: 2 Overlap #: 7 Alignment: -GTCHSBCCYCGKSCVCYB TTTSGCGC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement BKGVGSRCGKGGCGSSARA VAGGCCBBGGCVBB BKSAGGCCGBGGCSSSARA Direction: Forward Position #: 3 Overlap #: 14 Alignment: BKGVGSRCGKGGCGSSARA --VAGGCCBBGGCVBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Original Motif BKSAGGCCGBGGCSSSARA DGVBCABTGDWGCGKRRCSR DGVDSVVYGDDGCGBVAMAR Direction: Forward Position #: 1 Overlap #: 19 Alignment: BKSAGGCCGBGGCSSSARA- DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 47 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 csGCCCCGCCCCsc Reverse Complement Original Motif CCGCGCGS HVGCCCCGCCCCBB HCSSCSCGCCCCBB Direction: Forward Position #: 2 Overlap #: 8 Alignment: -CCGCGCGS----- HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif HCSSCSCGCCCCBB BCCGCCCCGCCCCBB HCSSCGCSCCSCCCCBB Direction: Forward Position #: 3 Overlap #: 12 Alignment: HCSSCSCGCCCCBB--- --BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Reverse Complement BBGGGGSGGSGCGSSGD MSGGGGCGGGGYSG BBRGGGGGSGGSGBSGD Direction: Forward Position #: 3 Overlap #: 14 Alignment: BBGGGGSGGSGCGSSGD --MSGGGGCGGGGYSG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement BBRGGGGGSGGSGBSGD GCCACGTGSD BCCVSGKGSGGSGBSGD Direction: Forward Position #: 1 Overlap #: 10 Alignment: BBRGGGGGSGGSGBSGD GCCACGTGSD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement BCCVSGKGSGGSGBSGD DCCACGTGCV DCCACGTGSVGSGBSGD Direction: Forward Position #: 1 Overlap #: 10 Alignment: BCCVSGKGSGGSGBSGD DCCACGTGCV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFAP2A Original Motif Reverse Complement DCCACGTGSVGSGBSGD SCMVBBGGC BCCVCGKGCVGSGBSGD Direction: Forward Position #: 1 Overlap #: 9 Alignment: DCCACGTGSVGSGBSGD SCMVBBGGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Reverse Complement Original Motif HCSBCSCVGCYCGBGGB CCCCKCCCCC CCCCSCCCSCYCGBGGB Direction: Forward Position #: 1 Overlap #: 10 Alignment: HCSBCSCVGCYCGBGGB CCCCKCCCCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement BCCVCGKGSGGGSGGGG VAGGCCBBGGCVBB BCCVAGGSCBGGGBSGG Direction: Forward Position #: 4 Overlap #: 14 Alignment: BCCVCGKGSGGGSGGGG ---VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Reverse Complement BCCVAGGSCBGGGBSGG GCCYCMCCCD GCCHCVSCCDGGGBSGG Direction: Forward Position #: 1 Overlap #: 10 Alignment: BCCVAGGSCBGGGBSGG GCCYCMCCCD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Reverse Complement Reverse Complement CCSBCCCHGGSVGDGGC GCGGACGTTV CGTTVBSGGACCSBCCCHGGSV Direction: Backward Position #: 6 Overlap #: 5 Alignment: CCSBCCCHGGSVGDGGC----- ------------GCGGACGTTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 29 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIF1AARNT kcACCTGCAgc Original Motif Original Motif VBACGTGV BCACCTGCABC ABCVBACSTGC Direction: Backward Position #: 4 Overlap #: 8 Alignment: VBACGTGV--- BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Reverse Complement ABCVBACSTGC SGGTCACGTGACCS AGSDCACGTGMCCS Direction: Forward Position #: 1 Overlap #: 11 Alignment: ABCVBACSTGC--- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 25 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFAP2A TFF11 Reverse Complement Original Motif SCMVBBGGC GGMGGRGGCGGVGC GSMVGVGGCGGVGC Direction: Forward Position #: 1 Overlap #: 9 Alignment: SCMVBBGGC----- GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Original Motif Reverse Complement GSMVGVGGCGGVGC CGCGBMGCCG SGCGBVGSCGGVGC Direction: Forward Position #: 1 Overlap #: 10 Alignment: GSMVGVGGCGGVGC CGCGBMGCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement SGCGBVGSCGGVGC KKKAGGDGGAKKMGBBGKMG SGBGBVGSCGGRGBMGBBGKMG Direction: Forward Position #: 3 Overlap #: 12 Alignment: SGCGBVGSCGGVGC-------- --KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Original Motif SGBGBVGSCGGRGBMGBBGKMG CGGVGCCGCVGC SGGVGCSGCGGCGBMGBBGKMG Direction: Forward Position #: 1 Overlap #: 12 Alignment: SGBGBVGSCGGRGBMGBBGKMG CGGVGCCGCVGC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Reverse Complement CYYCBBCYBCGCCGCSGCVCCS CHCCBCCKMCTCCKCM CHCCBSCBVCKCCKCVGCVCCS Direction: Forward Position #: 1 Overlap #: 16 Alignment: CYYCBBCYBCGCCGCSGCVCCS CHCCBCCKMCTCCKCM------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Reverse Complement Original Motif SGGVGCVGYGGYGVVGSVGGDG RGRAGARRGARRAR SGGVRVRRBRGDGVRGVRGGDG Direction: Forward Position #: 5 Overlap #: 14 Alignment: SGGVGCVGYGGYGVVGSVGGDG ----RGRAGARRGARRAR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement SGGVRVRRBRGDGVRGVRGGDG BBGGGGCGGGGCGGB SGGBVGGGGSGGGGVGVVGGDG Direction: Forward Position #: 4 Overlap #: 15 Alignment: SGGVRVRRBRGDGVRGVRGGDG ---BBGGGGCGGGGCGGB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif CHCCVVCVCCCCSCCCCVBCCS CSKCCCCGCCCCSY CHCCHVBCCCCSCCCCCBBCCS Direction: Forward Position #: 5 Overlap #: 14 Alignment: CHCCVVCVCCCCSCCCCVBCCS ----CSKCCCCGCCCCSY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Original Motif CHCCHVBCCCCSCCCCCBBCCS HVGCCCCGCCCCBB CHSCCCCGCCCCSCCCCBBCCS Direction: Forward Position #: 1 Overlap #: 14 Alignment: CHCCHVBCCCCSCCCCCBBCCS HVGCCCCGCCCCBB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Reverse Complement Reverse Complement SGGBBGGGGSGGGGCGGGGSDG GBTGCAGGTGB GVKGCAGGKGBGGGGCGGGGSDG Direction: Forward Position #: 2 Overlap #: 10 Alignment: -SGGBBGGGGSGGGGCGGGGSDG GBTGCAGGTGB------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 41 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Motif 3 Original Motif Original Motif HDAAATAATADD AWAAAWTWAAASWA AWAAAATAAWAVWA Direction: Backward Position #: 2 Overlap #: 12 Alignment: -HDAAATAATADD- AWAAAWTWAAASWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement AWAAAATAAWAVWA ABAAAAAAWHAAAAARAW AWADAAWAAAABAAAAARAW Direction: Forward Position #: 3 Overlap #: 12 Alignment: AWAAAATAAWAVWA------ --ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Original Motif AWADAAWAAAABAAAAARAW HDWVAAAHAAAAAMAAAMWWWHBWA WHWVAAWAAAADAAAAAVWWWHBWA Direction: Forward Position #: 1 Overlap #: 20 Alignment: AWADAAWAAAABAAAAARAW----- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif WHWVAAWAAAADAAAAAVWWWHBWA AATHATATWTHAAA WHWVAAWHAWAWWWAAAAWWWHBWA Direction: Forward Position #: 5 Overlap #: 14 Alignment: WHWVAAWAAAADAAAAAVWWWHBWA ----AATHATATWTHAAA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Reverse Complement TWVHWWWTTTTWWWTWTHWTTBWHW WAHHTVTTYKAAAAWTTRAT TWHHTDTTTTWAAWTWTDATTBWHW Direction: Forward Position #: 1 Overlap #: 20 Alignment: TWVHWWWTTTTWWWTWTHWTTBWHW WAHHTVTTYKAAAAWTTRAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Original Motif WHWVAATDAWAWTTWAAAADAHHWA AWTAAATAYAATTT AWTAAATAHAATTTWAAAADAHHWA Direction: Forward Position #: 1 Overlap #: 14 Alignment: WHWVAATDAWAWTTWAAAADAHHWA AWTAAATAYAATTT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif AWTAAATAHAATTTWAAAADAHHWA WWHTTTTTCABAAWTTWA AWTAAATWTWWTTYWDAAATWWAWA Direction: Forward Position #: 6 Overlap #: 18 Alignment: AWTAAATAHAATTTWAAAADAHHWA -----WWHTTTTTCABAAWTTWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Original Motif AWTAAATWTWWTTYWDAAATWWAWA ACAAWTRATTTTGA AAYAAWTRWTTTTGADAAATWWAWA Direction: Forward Position #: 2 Overlap #: 14 Alignment: AWTAAATWTWWTTYWDAAATWWAWA -ACAAWTRATTTTGA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Reverse Complement Reverse Complement TWTWWATTTDTCAAAAWKAWTTKTT WWTAKTTCDKAATT WWTATTTMTTWATHAAAAWKAWTTKTT Direction: Forward Position #: 3 Overlap #: 12 Alignment: --TWTWWATTTDTCAAAAWKAWTTKTT WWTAKTTCDKAATT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Original Motif AAYAAWTRWTTTTHATWAARAAATAWW AAATRWTAAAATCA AAYAAATRWTWWWAWYAAARAAATAWW Direction: Forward Position #: 4 Overlap #: 14 Alignment: AAYAAWTRWTTTTHATWAARAAATAWW ---AAATRWTAAAATCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 37 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Motif 3 Reverse Complement Reverse Complement WHTATTATTTDH TWSTTTWAWTTTWT TWVTWTTATTTTHT Direction: Backward Position #: 2 Overlap #: 12 Alignment: -WHTATTATTTDH- TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Original Motif AHAAAATAAWABWA HDWVAAAHAAAAAMAAAMWWWHBWA AHHAADWAAWADWAAMAAAMWWWHBWA Direction: Forward Position #: 3 Overlap #: 12 Alignment: AHAAAATAAWABWA------------- --HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif TWVHWWWYTTTYTTWDTWTTWDTTHHT WTKTTTTTHWTTTTTTBT TWVHWWWBTTTTTHWTTWTTTBTTHHT Direction: Forward Position #: 6 Overlap #: 18 Alignment: TWVHWWWYTTTYTTWDTWTTWDTTHHT -----WTKTTTTTHWTTTTTTBT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif AHHAAVAAAWAAWHAAAAAVWWWHBWA AATHATATWTHAAA AHHAAAWAAWAWWTVAAAAVWWWHBWA Direction: Forward Position #: 5 Overlap #: 14 Alignment: AHHAAVAAAWAAWHAAAAAVWWWHBWA ----AATHATATWTHAAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Original Motif AHHAAAWAAWAWWTVAAAAVWWWHBWA AWTAAATAYAATTT AWTAAATAHAATTTVAAAAVWWWHBWA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AHHAAAWAAWAWWTVAAAAVWWWHBWA AWTAAATAYAATTT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif AWTAAATAHAATTTVAAAAVWWWHBWA ATKAAWTTTTRMAABAHHTW AWTAAATWWAATTTWAAAAHAWHTDWA Direction: Forward Position #: 6 Overlap #: 20 Alignment: AWTAAATAHAATTTVAAAAVWWWHBWA -----ATKAAWTTTTRMAABAHHTW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Reverse Complement TWDAHWTHTTTTWAAATTWWATTTAWT TWAAWTTVTGAAAAAHWW TWWAWTTVTKWWAAAWWWWWATTTAWT Direction: Forward Position #: 1 Overlap #: 18 Alignment: TWDAHWTHTTTTWAAATTWWATTTAWT TWAAWTTVTGAAAAAHWW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Reverse Complement AWTAAATWWWWWTTTWWRABAAWTWWA TCAAAATKAWTTGT WCWAAATDAWTTKTTWWRABAAWTWWA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AWTAAATWWWWWTTTWWRABAAWTWWA TCAAAATKAWTTGT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Reverse Complement Reverse Complement TWWAWTTVTKWWAAYAAWTDATTTWGW WWTAKTTCDKAATT TWTADTTCTKAATWYAAWTDATTTWGW Direction: Forward Position #: 1 Overlap #: 14 Alignment: TWWAWTTVTKWWAAYAAWTDATTTWGW WWTAKTTCDKAATT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Original Motif Reverse Complement TWTADTTCTKAATWYAAWTDATTTWGW TWTAATCTAWGAA TWTWATYTAWGAATWYAAWTDATTTWGW Direction: Forward Position #: 2 Overlap #: 12 Alignment: -TWTADTTCTKAATWYAAWTDATTTWGW TWTAATCTAWGAA--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-20-2016 14:26:06 Runtime: 707.569 seconds MOTIFSIM is written by Ngoc Tam L. 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