MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.1

INPUT

Input Parameters
Number of files: 4
Number of top significant motifs: 10
Number of best matches: 10
Similarity cutoff >= 0.75
Matching motif database: UniProbe Mus Musculus
Phylogenetic tree: Yes
Combined similar motifs: Yes
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
DREME_DM721.txt 16 1
MEME-ChIP_DM721.txt 11 2
PScanChIP_DM721.txt 37 3
RSAT_peak-motifs_DM721.txt 40 4

RESULTS

Top 10 Significant Motifs - Global Matching (Highest to Lowest)

Dataset #: 2 Motif ID: 18 Motif name: Motif 18

Original motif     Consensus sequence: AMACA Reverse complement motif     Consensus sequence: TGTRT

Best Matches for Top Significant Motif ID 18 (Highest to Lowest)

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 5
Similarity score: 0

Alignment:
TGTGTGTG
TGTRT---

Original motif     Consensus sequence: CACACACA Reverse complement motif     Consensus sequence: TGTGTGTG

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 5
Similarity score: 0.0148279

Alignment:
TGTGTGTGTGTG
--TGTRT-----

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 5
Similarity score: 0.0228414

Alignment:
CACACACACACA
---AMACA----

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 5
Similarity score: 0.0274014

Alignment:
AAACAAAACAA
-----AMACA-

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 5
Similarity score: 0.0291354

Alignment:
HHCAAAAACAH
-----AMACA-

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 5
Similarity score: 0.0293401

Alignment:
DHAYAYAYRTGTGTRTDH
---------TGTRT----

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 4
Motif ID: 100
Motif name: wrTGTATACAyw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 5
Similarity score: 0.0302831

Alignment:
HDTGTATACAHD
--TGTRT-----

Original motif     Consensus sequence: HDTGTATACAHD Reverse complement motif     Consensus sequence: DHTGTATACADH

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.0378142

Alignment:
AAAASAAA
-AMACA--

Original motif     Consensus sequence: AAAASAAA Reverse complement motif     Consensus sequence: TTTSTTTT

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 5
Similarity score: 0.0390126

Alignment:
VHGARAYAGAVV
---AMACA----

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 1
Motif ID: 14
Motif name: Motif 14
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 5
Similarity score: 0.042464

Alignment:
GKGTGKGC
-TGTRT--

Original motif     Consensus sequence: GCRCACRC Reverse complement motif     Consensus sequence: GKGTGKGC

Dataset #: 3 Motif ID: 30 Motif name: ZEB1

Original motif     Consensus sequence: CACCTD Reverse complement motif     Consensus sequence: HAGGTG

Best Matches for Top Significant Motif ID 30 (Highest to Lowest)

Dataset #: 4
Motif ID: 89
Motif name: ccCCmCACCcc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0148347

Alignment:
HBCCMCACCHH
-----CACCTD

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Dataset #: 4
Motif ID: 93
Motif name: rrAGGGGGArr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0194512

Alignment:
VVAGGGGGAVV
-HAGGTG----

Original motif     Consensus sequence: VVAGGGGGAVV Reverse complement motif     Consensus sequence: VVTCCCCCTVV

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0270731

Alignment:
HACAYAYACATRHD
------CACCTD--

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0321302

Alignment:
HDAMACACAKKTKTKTHD
-----CACCTD-------

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 4
Motif ID: 96
Motif name: yrTGTGCACAyr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0342918

Alignment:
BVTGTGCACABV
HAGGTG------

Original motif     Consensus sequence: BVTGTGCACABV Reverse complement motif     Consensus sequence: BBTGTGCACAVV

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.0456166

Alignment:
SSCGCCSCCGCCCSS
--------CACCTD-

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0458702

Alignment:
CYBCCTCC
-CACCTD-

Original motif     Consensus sequence: CYBCCTCC Reverse complement motif     Consensus sequence: GGAGGVMG

Dataset #: 4
Motif ID: 84
Motif name: wsAGCTACwy
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0461351

Alignment:
VHGTAGCTVD
---CACCTD-

Original motif     Consensus sequence: DVAGCTACHB Reverse complement motif     Consensus sequence: VHGTAGCTVD

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0554152

Alignment:
BBCRCCYCCGBB
--CACCTD----

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4
Motif ID: 90
Motif name: ssCGsCwsCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0564656

Alignment:
BBCGSCWSCBB
-----CACCTD

Original motif     Consensus sequence: BBCGSCWSCBB Reverse complement motif     Consensus sequence: BBGSWGSCGBB

Dataset #: 1 Motif ID: 7 Motif name: Motif 7

Original motif     Consensus sequence: ASASAGAA Reverse complement motif     Consensus sequence: TTCTSTST

Best Matches for Top Significant Motif ID 7 (Highest to Lowest)

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00355249

Alignment:
BBTCTKTKTCHB
-TTCTSTST---

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0313478

Alignment:
AAACAAAACAA
ASASAGAA---

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 4
Motif ID: 82
Motif name: rmACAGCAGsr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0319191

Alignment:
DVCTGCTGTVB
---TTCTSTST

Original motif     Consensus sequence: VVACAGCAGVD Reverse complement motif     Consensus sequence: DVCTGCTGTVB

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0398795

Alignment:
TGTGTGTGTGTG
-TTCTSTST---

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0407034

Alignment:
TGTGTGTGTGTG
-TTCTSTST---

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0441956

Alignment:
AAAAAAAAAAA
ASASAGAA---

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0451851

Alignment:
AAAAAAACAAARRA
--ASASAGAA----

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0493389

Alignment:
TGTGTGTGTGTKTG
-----TTCTSTST-

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 2
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0494079

Alignment:
CACACAVRCACACA
-----ASASAGAA-

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Dataset #: 3
Motif ID: 48
Motif name: EWSR1-FLI1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0559328

Alignment:
GGAAGGAAGGAAGGAAGG
-------ASASAGAA---

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC

Dataset #: 2 Motif ID: 21 Motif name: Motif 21

Original motif     Consensus sequence: ATKTM Reverse complement motif     Consensus sequence: RARAT

Best Matches for Top Significant Motif ID 21 (Highest to Lowest)

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 5
Similarity score: 0.0065927

Alignment:
CATTTKC
-ATKTM-

Original motif     Consensus sequence: GRAAATG Reverse complement motif     Consensus sequence: CATTTKC

Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 5
Similarity score: 0.0217628

Alignment:
TAMATA
-RARAT

Original motif     Consensus sequence: TAMATA Reverse complement motif     Consensus sequence: TATRTA

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 5
Similarity score: 0.0314602

Alignment:
DDTAAAAATHD
----RARAT--

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 71
Motif name: wyATTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.0314958

Alignment:
DDTAAAATHD
---RARAT--

Original motif     Consensus sequence: DHATTTTADD Reverse complement motif     Consensus sequence: DDTAAAATHD

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 5
Similarity score: 0.0326182

Alignment:
VHGARAYAGAVV
--RARAT-----

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 74
Motif name: twTACATAvw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 5
Similarity score: 0.0335447

Alignment:
DBTATGTAHH
---ATKTM--

Original motif     Consensus sequence: HHTACATAVD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 4
Motif ID: 83
Motif name: wwTAAAwAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 5
Similarity score: 0.0514182

Alignment:
HHTWTTTADD
---ATKTM--

Original motif     Consensus sequence: DDTAAAWAHH Reverse complement motif     Consensus sequence: HHTWTTTADD

Dataset #: 4
Motif ID: 76
Motif name: wwWAAAAAwa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 5
Similarity score: 0.0597589

Alignment:
WWAAAAAAWH
----RARAT-

Original motif     Consensus sequence: WWAAAAAAWH Reverse complement motif     Consensus sequence: HWTTTTTTWW

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 5
Similarity score: 0.0609742

Alignment:
DVTGCATGCATGBH
---------ATKTM

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 4
Motif ID: 100
Motif name: wrTGTATACAyw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 5
Similarity score: 0.0620607

Alignment:
DHTGTATACADH
-ATKTM------

Original motif     Consensus sequence: HDTGTATACAHD Reverse complement motif     Consensus sequence: DHTGTATACADH

Dataset #: 1 Motif ID: 4 Motif name: Motif 4

Original motif     Consensus sequence: CYBCCTCC Reverse complement motif     Consensus sequence: GGAGGVMG

Best Matches for Top Significant Motif ID 4 (Highest to Lowest)

Dataset #: 3
Motif ID: 48
Motif name: EWSR1-FLI1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.022644

Alignment:
GGAAGGAAGGAAGGAAGG
-----GGAGGVMG-----

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC

Dataset #: 3
Motif ID: 32
Motif name: SP1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0247246

Alignment:
CCCCKCCCCC
--CYBCCTCC

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG

Dataset #: 4
Motif ID: 93
Motif name: rrAGGGGGArr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0300296

Alignment:
VVTCCCCCTVV
---CYBCCTCC

Original motif     Consensus sequence: VVAGGGGGAVV Reverse complement motif     Consensus sequence: VVTCCCCCTVV

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0335629

Alignment:
SSCGCCSCCGCCCSS
----CYBCCTCC---

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 3
Motif ID: 52
Motif name: Klf4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0354458

Alignment:
GCCYCMCCCD
-CYBCCTCC-

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.045829

Alignment:
BBCRCCYCCGBB
----CYBCCTCC

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4
Motif ID: 73
Motif name: ssCGsCTCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0472644

Alignment:
VVCGSCTCBB
-CYBCCTCC-

Original motif     Consensus sequence: VVCGSCTCBB Reverse complement motif     Consensus sequence: BBGAGSCGVV

Dataset #: 3
Motif ID: 57
Motif name: MZF1_5-13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.049303

Alignment:
BTHCCCCTYB
--CYBCCTCC

Original motif     Consensus sequence: BKAGGGGDAD Reverse complement motif     Consensus sequence: BTHCCCCTYB

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0528666

Alignment:
BGRRRGRGGRTGRTTYGGGG
----GGAGGVMG--------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 89
Motif name: ccCCmCACCcc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0549805

Alignment:
HBCCMCACCHH
-CYBCCTCC--

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Dataset #: 1 Motif ID: 2 Motif name: Motif 2

Original motif     Consensus sequence: CACACACA Reverse complement motif     Consensus sequence: TGTGTGTG

Best Matches for Top Significant Motif ID 2 (Highest to Lowest)

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.00486551

Alignment:
CACACACACACA
--CACACACA--

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0100991

Alignment:
TGTGTGTGTGTG
----TGTGTGTG

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0101254

Alignment:
CAYACACACACACA
----CACACACA--

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 2
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0226631

Alignment:
TGTGTGKVTGTGTG
TGTGTGTG------

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 8
Similarity score: 0.0393219

Alignment:
DHAYAYAYRTGTGTRTDH
---------TGTGTGTG-

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0468047

Alignment:
HACAYAYACATRHD
--CACACACA----

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0633924

Alignment:
HHCAAAAACAH
--CACACACA-

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 74
Motif name: twTACATAvw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0691437

Alignment:
DBTATGTAHH
TGTGTGTG--

Original motif     Consensus sequence: HHTACATAVD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0752394

Alignment:
CCCCMAAMCAMCCMCMMMCV
------CACACACA------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0764586

Alignment:
DVTGCATGCATGBH
------TGTGTGTG

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 2 Motif ID: 20 Motif name: Motif 20

Original motif     Consensus sequence: CTCTGY Reverse complement motif     Consensus sequence: KCAGAG

Best Matches for Top Significant Motif ID 20 (Highest to Lowest)

Dataset #: 4
Motif ID: 77
Motif name: ssGCTswGCCms
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0323407

Alignment:
VBGCTSAGCCHB
---CTCTGY---

Original motif     Consensus sequence: VBGCTSAGCCHB Reverse complement motif     Consensus sequence: BDGGCTSAGCBV

Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0352938

Alignment:
ASASAGAA
--KCAGAG

Original motif     Consensus sequence: ASASAGAA Reverse complement motif     Consensus sequence: TTCTSTST

Dataset #: 3
Motif ID: 59
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0398495

Alignment:
AAAGGTCAAAGGTCAAC
-----KCAGAG------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0415907

Alignment:
BTRGGDCARAGGKCA
-----KCAGAG----

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0430865

Alignment:
CCGCCGCC
-CTCTGY-

Original motif     Consensus sequence: CCGCCGCC Reverse complement motif     Consensus sequence: GGCGGCGG

Dataset #: 4
Motif ID: 72
Motif name: ssCKCwsCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0439226

Alignment:
BVCGCWSCGBV
----CTCTGY-

Original motif     Consensus sequence: BVCGCWSCGBV Reverse complement motif     Consensus sequence: VBCGSWGCGVB

Dataset #: 3
Motif ID: 38
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0462597

Alignment:
AKGYYCAAAGRTCA
----KCAGAG----

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0467436

Alignment:
BBTCTKTKTCHB
-CTCTGY-----

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 3
Motif ID: 50
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0481824

Alignment:
RGGBCAAAGKYCA
---KCAGAG----

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3
Motif ID: 53
Motif name: MIZF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.049747

Alignment:
BAACGTCCGC
----CTCTGY

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV

Dataset #: 3 Motif ID: 42 Motif name: ArntAhr

Original motif     Consensus sequence: YGCGTG Reverse complement motif     Consensus sequence: CACGCM

Best Matches for Top Significant Motif ID 42 (Highest to Lowest)

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0388571

Alignment:
TGTGTGTGTGTKTG
------YGCGTG--

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0420782

Alignment:
TGTGTGTGTGTG
YGCGTG------

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 2
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0430749

Alignment:
TGTGTGKVTGTGTG
YGCGTG--------

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.043218

Alignment:
HVCATGCATGCABD
--CACGCM------

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0440329

Alignment:
TGTGTGTGTGTG
----YGCGTG--

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 96
Motif name: yrTGTGCACAyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0477579

Alignment:
BVTGTGCACABV
YGCGTG------

Original motif     Consensus sequence: BVTGTGCACABV Reverse complement motif     Consensus sequence: BBTGTGCACAVV

Dataset #: 4
Motif ID: 89
Motif name: ccCCmCACCcc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0479115

Alignment:
HBCCMCACCHH
-----CACGCM

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Dataset #: 4
Motif ID: 65
Motif name: ssCGrGCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0487655

Alignment:
VBCGCMCGSV
----CACGCM

Original motif     Consensus sequence: VSCGRGCGBV Reverse complement motif     Consensus sequence: VBCGCMCGSV

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0505006

Alignment:
CACACACA
CACGCM--

Original motif     Consensus sequence: CACACACA Reverse complement motif     Consensus sequence: TGTGTGTG

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0538134

Alignment:
BBCGCCCSGCVV
CACGCM------

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 1 Motif ID: 13 Motif name: Motif 13

Original motif     Consensus sequence: GAGRCAGR Reverse complement motif     Consensus sequence: MCTGKCTC

Best Matches for Top Significant Motif ID 13 (Highest to Lowest)

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0131318

Alignment:
VHGARAYAGAVV
--GAGRCAGR--

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 73
Motif name: ssCGsCTCss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0334555

Alignment:
BBGAGSCGVV
--GAGRCAGR

Original motif     Consensus sequence: VVCGSCTCBB Reverse complement motif     Consensus sequence: BBGAGSCGVV

Dataset #: 3
Motif ID: 48
Motif name: EWSR1-FLI1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0397014

Alignment:
GGAAGGAAGGAAGGAAGG
------GAGRCAGR----

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC

Dataset #: 4
Motif ID: 99
Motif name: sgCTGGCCAGcs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0475948

Alignment:
VVCTGGCCAGBB
-MCTGKCTC---

Original motif     Consensus sequence: BBCTGGCCAGVV Reverse complement motif     Consensus sequence: VVCTGGCCAGBB

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.049302

Alignment:
GGYGCTGTCCATGGTGCTGAA
---MCTGKCTC----------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 2
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0551203

Alignment:
GGGGMGGG
GAGRCAGR

Original motif     Consensus sequence: CCCRCCCC Reverse complement motif     Consensus sequence: GGGGMGGG

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.055328

Alignment:
BBCWGGCCAGCBB
-MCTGKCTC----

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 4
Motif ID: 93
Motif name: rrAGGGGGArr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0555608

Alignment:
VVAGGGGGAVV
---GAGRCAGR

Original motif     Consensus sequence: VVAGGGGGAVV Reverse complement motif     Consensus sequence: VVTCCCCCTVV

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 13
Number of overlap: 8
Similarity score: 0.055859

Alignment:
VDBHMAGGTCACCCTGACCY
------------MCTGKCTC

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0596402

Alignment:
TGRCCTKTGHCCKAB
---MCTGKCTC----

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 1 Motif ID: 14 Motif name: Motif 14

Original motif     Consensus sequence: GCRCACRC Reverse complement motif     Consensus sequence: GKGTGKGC

Best Matches for Top Significant Motif ID 14 (Highest to Lowest)

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0307099

Alignment:
CAYACACACACACA
---GCRCACRC---

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0357914

Alignment:
CACACACACACA
-GCRCACRC---

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0366948

Alignment:
CACACACACACA
-GCRCACRC---

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 3
Motif ID: 52
Motif name: Klf4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.03983

Alignment:
DGGGYGKGGC
-GKGTGKGC-

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD

Dataset #: 2
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0418776

Alignment:
CACACAVRCACACA
-----GCRCACRC-

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Dataset #: 3
Motif ID: 44
Motif name: Egr1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0429433

Alignment:
HGCGTGGGCGK
-GKGTGKGC--

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH

Dataset #: 4
Motif ID: 89
Motif name: ccCCmCACCcc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0505252

Alignment:
DDGGTGRGGBD
-GKGTGKGC--

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Dataset #: 4
Motif ID: 96
Motif name: yrTGTGCACAyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0537384

Alignment:
BVTGTGCACABV
---GCRCACRC-

Original motif     Consensus sequence: BVTGTGCACABV Reverse complement motif     Consensus sequence: BBTGTGCACAVV

Dataset #: 4
Motif ID: 65
Motif name: ssCGrGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.067702

Alignment:
VBCGCMCGSV
-GCRCACRC-

Original motif     Consensus sequence: VSCGRGCGBV Reverse complement motif     Consensus sequence: VBCGCMCGSV

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0685867

Alignment:
SSCGCCSCCGCCCSS
---GCRCACRC----

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS


Significant Motifs - Global and Local Matching (Highest to Lowest)

Dataset #: 3 Motif ID: 30 Motif name: ZEB1

Original motif     Consensus sequence: CACCTD Reverse complement motif     Consensus sequence: HAGGTG

Best Matches for Significant Motif ID 30 (Highest to Lowest)

Dataset #: 3
Motif ID: 62
Motif name: RORA_1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0141289

Alignment:
TGACCTDVWT
-CACCTD---

Original motif     Consensus sequence: AWVDAGGTCA Reverse complement motif     Consensus sequence: TGACCTDVWT

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0143133

Alignment:
GGYGCTGTCCATGGTGCTGAA
----------HAGGTG-----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 89
Motif name: ccCCmCACCcc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0148347

Alignment:
HBCCMCACCHH
-----CACCTD

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Dataset #: 4
Motif ID: 93
Motif name: rrAGGGGGArr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0194512

Alignment:
VVAGGGGGAVV
-HAGGTG----

Original motif     Consensus sequence: VVAGGGGGAVV Reverse complement motif     Consensus sequence: VVTCCCCCTVV

Dataset #: 3
Motif ID: 47
Motif name: Esrrb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0207244

Alignment:
CACGTG
HAGGTG

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG

Dataset #: 3
Motif ID: 41
Motif name: Arnt
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0207244

Alignment:
CACGTG
CACCTD

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG

Dataset #: 3
Motif ID: 59
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0232753

Alignment:
GTTGACCTTTGACCTTT
----------CACCTD-

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 49
Motif name: HIF1AARNT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0237889

Alignment:
VBACGTGV
-HAGGTG-

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV

Dataset #: 3
Motif ID: 51
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0262123

Alignment:
TGYCAGGGGGCR
---HAGGTG---

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0264837

Alignment:
TGRCCTKTGHCCKAB
-CACCTD--------

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 4 Motif ID: 73 Motif name: ssCGsCTCss

Original motif     Consensus sequence: VVCGSCTCBB Reverse complement motif     Consensus sequence: BBGAGSCGVV

Best Matches for Significant Motif ID 73 (Highest to Lowest)

Dataset #: 4
Motif ID: 90
Motif name: ssCGsCwsCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0

Alignment:
BBGSWGSCGBB
-BBGAGSCGVV

Original motif     Consensus sequence: BBCGSCWSCBB Reverse complement motif     Consensus sequence: BBGSWGSCGBB

Dataset #: 4
Motif ID: 78
Motif name: sssCGssGCsss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0108856

Alignment:
SSSCGSSGCSSS
-VVCGSCTCBB-

Original motif     Consensus sequence: SSSCGSSGCSSS Reverse complement motif     Consensus sequence: SSSGCSSCGSSS

Dataset #: 4
Motif ID: 94
Motif name: ssCGCksCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0139257

Alignment:
VVCGCKSCGBB
-BBGAGSCGVV

Original motif     Consensus sequence: VVCGCKSCGBB Reverse complement motif     Consensus sequence: BBCGSRGCGVV

Dataset #: 4
Motif ID: 87
Motif name: ssCGGsYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0162661

Alignment:
BSCGGSCCGSV
VVCGSCTCBB-

Original motif     Consensus sequence: BSCGGSCCGSV Reverse complement motif     Consensus sequence: VSCGGSCCGSB

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.0236639

Alignment:
SSCGCCSCCGCCCSS
VVCGSCTCBB-----

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 4
Motif ID: 66
Motif name: ssCGssCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0241432

Alignment:
BSCGSSCGSV
VVCGSCTCBB

Original motif     Consensus sequence: BSCGSSCGSV Reverse complement motif     Consensus sequence: VSCGSSCGSB

Dataset #: 4
Motif ID: 65
Motif name: ssCGrGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0252915

Alignment:
VBCGCMCGSV
VVCGSCTCBB

Original motif     Consensus sequence: VSCGRGCGBV Reverse complement motif     Consensus sequence: VBCGCMCGSV

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0315402

Alignment:
BBCGCCCSGCVV
--VVCGSCTCBB

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 4
Motif ID: 72
Motif name: ssCKCwsCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0340702

Alignment:
VBCGSWGCGVB
-VVCGSCTCBB

Original motif     Consensus sequence: BVCGCWSCGBV Reverse complement motif     Consensus sequence: VBCGSWGCGVB

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0353522

Alignment:
BBCRCCYCCGBB
VVCGSCTCBB--

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4 Motif ID: 68 Motif name: dwCTTTTCwy

Original motif     Consensus sequence: DHCTTTTCHH Reverse complement motif     Consensus sequence: DHGAAAAGHD

Best Matches for Significant Motif ID 68 (Highest to Lowest)

Dataset #: 4
Motif ID: 71
Motif name: wyATTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.00508721

Alignment:
DDTAAAATHD
DHGAAAAGHD

Original motif     Consensus sequence: DHATTTTADD Reverse complement motif     Consensus sequence: DDTAAAATHD

Dataset #: 4
Motif ID: 81
Motif name: wwTAAwAAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0148156

Alignment:
DDTAAWAAHH
DHGAAAAGHD

Original motif     Consensus sequence: DDTAAWAAHH Reverse complement motif     Consensus sequence: HHTTWTTADD

Dataset #: 4
Motif ID: 76
Motif name: wwWAAAAAwa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0152278

Alignment:
WWAAAAAAWH
DHGAAAAGHD

Original motif     Consensus sequence: WWAAAAAAWH Reverse complement motif     Consensus sequence: HWTTTTTTWW

Dataset #: 4
Motif ID: 83
Motif name: wwTAAAwAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0196583

Alignment:
DDTAAAWAHH
DHGAAAAGHD

Original motif     Consensus sequence: DDTAAAWAHH Reverse complement motif     Consensus sequence: HHTWTTTADD

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0226988

Alignment:
DDTAAAAATHD
DHGAAAAGHD-

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 10
Similarity score: 0.0242678

Alignment:
GGYGCTGTCCATGGTGCTGAA
---------DHCTTTTCHH--

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0309896

Alignment:
HTGTTTTTGHH
-DHCTTTTCHH

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0311578

Alignment:
TTGTTTTGTTT
DHCTTTTCHH-

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 3
Motif ID: 50
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.03324

Alignment:
RGGBCAAAGKYCA
--DHGAAAAGHD-

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0365489

Alignment:
BBTCTKTKTCHB
-DHCTTTTCHH-

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 2 Motif ID: 18 Motif name: Motif 18

Original motif     Consensus sequence: AMACA Reverse complement motif     Consensus sequence: TGTRT

Best Matches for Significant Motif ID 18 (Highest to Lowest)

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 5
Similarity score: 0

Alignment:
CACACACA
---AMACA

Original motif     Consensus sequence: CACACACA Reverse complement motif     Consensus sequence: TGTGTGTG

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 5
Similarity score: 0.0148279

Alignment:
TGTGTGTGTGTG
--TGTRT-----

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.0192752

Alignment:
CAYACACACACACA
-----AMACA----

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 5
Similarity score: 0.0228414

Alignment:
CACACACACACA
---AMACA----

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 2
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 5
Similarity score: 0.0233505

Alignment:
CACACAVRCACACA
---------AMACA

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 5
Similarity score: 0.0274014

Alignment:
AAACAAAACAA
-----AMACA-

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.0291354

Alignment:
HHCAAAAACAH
-----AMACA-

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 5
Similarity score: 0.0293401

Alignment:
HDAMACACAKKTKTKTHD
----AMACA---------

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 4
Motif ID: 100
Motif name: wrTGTATACAyw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 5
Similarity score: 0.0302831

Alignment:
HDTGTATACAHD
--TGTRT-----

Original motif     Consensus sequence: HDTGTATACAHD Reverse complement motif     Consensus sequence: DHTGTATACADH

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.0378142

Alignment:
AAAASAAA
-AMACA--

Original motif     Consensus sequence: AAAASAAA Reverse complement motif     Consensus sequence: TTTSTTTT

Dataset #: 4 Motif ID: 71 Motif name: wyATTTTAww

Original motif     Consensus sequence: DHATTTTADD Reverse complement motif     Consensus sequence: DDTAAAATHD

Best Matches for Significant Motif ID 71 (Highest to Lowest)

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0

Alignment:
DHATTTTTADD
DHATTTTADD-

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 81
Motif name: wwTAAwAAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.00285443

Alignment:
DDTAAWAAHH
DDTAAAATHD

Original motif     Consensus sequence: DDTAAWAAHH Reverse complement motif     Consensus sequence: HHTTWTTADD

Dataset #: 4
Motif ID: 83
Motif name: wwTAAAwAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.00437246

Alignment:
DDTAAAWAHH
DDTAAAATHD

Original motif     Consensus sequence: DDTAAAWAHH Reverse complement motif     Consensus sequence: HHTWTTTADD

Dataset #: 4
Motif ID: 76
Motif name: wwWAAAAAwa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0153432

Alignment:
WWAAAAAAWH
DDTAAAATHD

Original motif     Consensus sequence: WWAAAAAAWH Reverse complement motif     Consensus sequence: HWTTTTTTWW

Dataset #: 4
Motif ID: 68
Motif name: dwCTTTTCwy
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0177129

Alignment:
DHGAAAAGHD
DDTAAAATHD

Original motif     Consensus sequence: DHCTTTTCHH Reverse complement motif     Consensus sequence: DHGAAAAGHD

Dataset #: 4
Motif ID: 104
Motif name: wtTTWwAAAaw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0302024

Alignment:
DDTTTWAAAHH
DHATTTTADD-

Original motif     Consensus sequence: HHTTTWAAADD Reverse complement motif     Consensus sequence: DDTTTWAAAHH

Dataset #: 4
Motif ID: 74
Motif name: twTACATAvw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0367109

Alignment:
DBTATGTAHH
DHATTTTADD

Original motif     Consensus sequence: HHTACATAVD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0372694

Alignment:
HHCAAAAACAH
DDTAAAATHD-

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0401253

Alignment:
AAACAAAACAA
DDTAAAATHD-

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0513368

Alignment:
AAAAAAAAAAA
DDTAAAATHD-

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 4 Motif ID: 76 Motif name: wwWAAAAAwa

Original motif     Consensus sequence: WWAAAAAAWH Reverse complement motif     Consensus sequence: HWTTTTTTWW

Best Matches for Significant Motif ID 76 (Highest to Lowest)

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.00795084

Alignment:
DHATTTTTADD
-HWTTTTTTWW

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 81
Motif name: wwTAAwAAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0105869

Alignment:
DDTAAWAAHH
WWAAAAAAWH

Original motif     Consensus sequence: DDTAAWAAHH Reverse complement motif     Consensus sequence: HHTTWTTADD

Dataset #: 4
Motif ID: 83
Motif name: wwTAAAwAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0135165

Alignment:
DDTAAAWAHH
WWAAAAAAWH

Original motif     Consensus sequence: DDTAAAWAHH Reverse complement motif     Consensus sequence: HHTWTTTADD

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0137579

Alignment:
TTTTTTTTTTT
HWTTTTTTWW-

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0272712

Alignment:
HHCAAAAACAH
WWAAAAAAWH-

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 71
Motif name: wyATTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0288034

Alignment:
DDTAAAATHD
WWAAAAAAWH

Original motif     Consensus sequence: DHATTTTADD Reverse complement motif     Consensus sequence: DDTAAAATHD

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0387825

Alignment:
AAACAAAACAA
WWAAAAAAWH-

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 4
Motif ID: 104
Motif name: wtTTWwAAAaw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0395975

Alignment:
HHTTTWAAADD
-WWAAAAAAWH

Original motif     Consensus sequence: HHTTTWAAADD Reverse complement motif     Consensus sequence: DDTTTWAAAHH

Dataset #: 4
Motif ID: 68
Motif name: dwCTTTTCwy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0413137

Alignment:
DHCTTTTCHH
HWTTTTTTWW

Original motif     Consensus sequence: DHCTTTTCHH Reverse complement motif     Consensus sequence: DHGAAAAGHD

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0498611

Alignment:
AAAAAAACAAARRA
WWAAAAAAWH----

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 4 Motif ID: 83 Motif name: wwTAAAwAww

Original motif     Consensus sequence: DDTAAAWAHH Reverse complement motif     Consensus sequence: HHTWTTTADD

Best Matches for Significant Motif ID 83 (Highest to Lowest)

Dataset #: 4
Motif ID: 81
Motif name: wwTAAwAAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0

Alignment:
DDTAAWAAHH
DDTAAAWAHH

Original motif     Consensus sequence: DDTAAWAAHH Reverse complement motif     Consensus sequence: HHTTWTTADD

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.00769202

Alignment:
DHATTTTTADD
-HHTWTTTADD

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 76
Motif name: wwWAAAAAwa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0148593

Alignment:
WWAAAAAAWH
DDTAAAWAHH

Original motif     Consensus sequence: WWAAAAAAWH Reverse complement motif     Consensus sequence: HWTTTTTTWW

Dataset #: 4
Motif ID: 74
Motif name: twTACATAvw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0155512

Alignment:
DBTATGTAHH
HHTWTTTADD

Original motif     Consensus sequence: HHTACATAVD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 4
Motif ID: 71
Motif name: wyATTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0191754

Alignment:
DHATTTTADD
HHTWTTTADD

Original motif     Consensus sequence: DHATTTTADD Reverse complement motif     Consensus sequence: DDTAAAATHD

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0386588

Alignment:
HHCAAAAACAH
DDTAAAWAHH-

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 104
Motif name: wtTTWwAAAaw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0400542

Alignment:
HHTTTWAAADD
-DDTAAAWAHH

Original motif     Consensus sequence: HHTTTWAAADD Reverse complement motif     Consensus sequence: DDTTTWAAAHH

Dataset #: 4
Motif ID: 98
Motif name: wwTAATTAATTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0425216

Alignment:
DHTAATTAATTADH
HHTWTTTADD----

Original motif     Consensus sequence: HDTAATTAATTAHD Reverse complement motif     Consensus sequence: DHTAATTAATTADH

Dataset #: 4
Motif ID: 68
Motif name: dwCTTTTCwy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0470869

Alignment:
DHCTTTTCHH
HHTWTTTADD

Original motif     Consensus sequence: DHCTTTTCHH Reverse complement motif     Consensus sequence: DHGAAAAGHD

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0497246

Alignment:
TTTTTTTTTTT
-HHTWTTTADD

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 4 Motif ID: 81 Motif name: wwTAAwAAww

Original motif     Consensus sequence: DDTAAWAAHH Reverse complement motif     Consensus sequence: HHTTWTTADD

Best Matches for Significant Motif ID 81 (Highest to Lowest)

Dataset #: 4
Motif ID: 83
Motif name: wwTAAAwAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0

Alignment:
DDTAAAWAHH
DDTAAWAAHH

Original motif     Consensus sequence: DDTAAAWAHH Reverse complement motif     Consensus sequence: HHTWTTTADD

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.00383605

Alignment:
DHATTTTTADD
-HHTTWTTADD

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 76
Motif name: wwWAAAAAwa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0119297

Alignment:
WWAAAAAAWH
DDTAAWAAHH

Original motif     Consensus sequence: WWAAAAAAWH Reverse complement motif     Consensus sequence: HWTTTTTTWW

Dataset #: 4
Motif ID: 71
Motif name: wyATTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0176574

Alignment:
DHATTTTADD
HHTTWTTADD

Original motif     Consensus sequence: DHATTTTADD Reverse complement motif     Consensus sequence: DDTAAAATHD

Dataset #: 4
Motif ID: 104
Motif name: wtTTWwAAAaw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0376356

Alignment:
HHTTTWAAADD
-DDTAAWAAHH

Original motif     Consensus sequence: HHTTTWAAADD Reverse complement motif     Consensus sequence: DDTTTWAAAHH

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0380114

Alignment:
HHCAAAAACAH
DDTAAWAAHH-

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 68
Motif name: dwCTTTTCwy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0422443

Alignment:
DHCTTTTCHH
HHTTWTTADD

Original motif     Consensus sequence: DHCTTTTCHH Reverse complement motif     Consensus sequence: DHGAAAAGHD

Dataset #: 4
Motif ID: 74
Motif name: twTACATAvw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0437545

Alignment:
DBTATGTAHH
HHTTWTTADD

Original motif     Consensus sequence: HHTACATAVD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 4
Motif ID: 98
Motif name: wwTAATTAATTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0451418

Alignment:
DHTAATTAATTADH
HHTTWTTADD----

Original motif     Consensus sequence: HDTAATTAATTAHD Reverse complement motif     Consensus sequence: DHTAATTAATTADH

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0493427

Alignment:
TTTTTTTTTTT
-HHTTWTTADD

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 4 Motif ID: 90 Motif name: ssCGsCwsCss

Original motif     Consensus sequence: BBCGSCWSCBB Reverse complement motif     Consensus sequence: BBGSWGSCGBB

Best Matches for Significant Motif ID 90 (Highest to Lowest)

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0236246

Alignment:
BBCGGKGGMGBB
-BBGSWGSCGBB

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4
Motif ID: 89
Motif name: ccCCmCACCcc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0238413

Alignment:
DDGGTGRGGBD
BBGSWGSCGBB

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Dataset #: 4
Motif ID: 78
Motif name: sssCGssGCsss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0239515

Alignment:
SSSCGSSGCSSS
-BBCGSCWSCBB

Original motif     Consensus sequence: SSSCGSSGCSSS Reverse complement motif     Consensus sequence: SSSGCSSCGSSS

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0274779

Alignment:
SSGGGCGGSGGCGSS
----BBGSWGSCGBB

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 4
Motif ID: 82
Motif name: rmACAGCAGsr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0336118

Alignment:
DVCTGCTGTVB
BBCGSCWSCBB

Original motif     Consensus sequence: VVACAGCAGVD Reverse complement motif     Consensus sequence: DVCTGCTGTVB

Dataset #: 4
Motif ID: 94
Motif name: ssCGCksCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0337912

Alignment:
VVCGCKSCGBB
BBGSWGSCGBB

Original motif     Consensus sequence: VVCGCKSCGBB Reverse complement motif     Consensus sequence: BBCGSRGCGVV

Dataset #: 4
Motif ID: 87
Motif name: ssCGGsYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0346171

Alignment:
BSCGGSCCGSV
BBCGSCWSCBB

Original motif     Consensus sequence: BSCGGSCCGSV Reverse complement motif     Consensus sequence: VSCGGSCCGSB

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0353683

Alignment:
BBGCTGGCCWGBB
BBGSWGSCGBB--

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0362688

Alignment:
BBCGCCCSGCVV
-BBCGSCWSCBB

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 4
Motif ID: 72
Motif name: ssCKCwsCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0409983

Alignment:
VBCGSWGCGVB
BBCGSCWSCBB

Original motif     Consensus sequence: BVCGCWSCGBV Reverse complement motif     Consensus sequence: VBCGSWGCGVB

Dataset #: 4 Motif ID: 86 Motif name: aaCAAAAACaa

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Best Matches for Significant Motif ID 86 (Highest to Lowest)

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.00599723

Alignment:
TTGTTTTGTTT
HTGTTTTTGHH

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0144021

Alignment:
DDTAAAAATHD
HHCAAAAACAH

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0192906

Alignment:
TTTTTTTTTTT
HTGTTTTTGHH

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0258087

Alignment:
DHKATGTKTKTGTD
---HTGTTTTTGHH

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0409728

Alignment:
TGTGTGTGTGTG
-HTGTTTTTGHH

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0416867

Alignment:
BBTCTKTKTCHB
-HTGTTTTTGHH

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0421933

Alignment:
TGTGTGTGTGTG
-HTGTTTTTGHH

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0439692

Alignment:
TGTGTGTGTGTKTG
-HTGTTTTTGHH--

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0504266

Alignment:
CCCCMAAMCAMCCMCMMMCV
------HHCAAAAACAH---

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0546799

Alignment:
AAAAAAACAAARRA
HHCAAAAACAH---

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA


Best Matches for Each Motif (Highest to Lowest)

Dataset #: 1 Motif ID: 1 Motif name: Motif 1

Original motif     Consensus sequence: AAAAWAAA Reverse complement motif     Consensus sequence: TTTWTTTT

Best Matches for Motif ID 1 (Highest to Lowest)

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0

Alignment:
AAAAAAAAAAA
--AAAAWAAA-

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0225461

Alignment:
AAAASAAA
AAAAWAAA

Original motif     Consensus sequence: AAAASAAA Reverse complement motif     Consensus sequence: TTTSTTTT

Dataset #: 4
Motif ID: 76
Motif name: wwWAAAAAwa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0315844

Alignment:
WWAAAAAAWH
-AAAAWAAA-

Original motif     Consensus sequence: WWAAAAAAWH Reverse complement motif     Consensus sequence: HWTTTTTTWW

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0405545

Alignment:
TKKTTTGTTTTTTT
---TTTWTTTT---

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 4
Motif ID: 81
Motif name: wwTAAwAAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0501043

Alignment:
DDTAAWAAHH
-AAAAWAAA-

Original motif     Consensus sequence: DDTAAWAAHH Reverse complement motif     Consensus sequence: HHTTWTTADD

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0508706

Alignment:
HHCAAAAACAH
---AAAAWAAA

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 83
Motif name: wwTAAAwAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0533374

Alignment:
HHTWTTTADD
TTTWTTTT--

Original motif     Consensus sequence: DDTAAAWAHH Reverse complement motif     Consensus sequence: HHTWTTTADD

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0555652

Alignment:
DHATTTTTADD
TTTWTTTT---

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0594787

Alignment:
AAACAAAACAA
AAAAWAAA---

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0715604

Alignment:
BBTCTKTKTCHB
-TTTWTTTT---

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0815577

Alignment:
DHKATGTKTKTGTD
------TTTWTTTT

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 1 Motif ID: 2 Motif name: Motif 2

Original motif     Consensus sequence: CACACACA Reverse complement motif     Consensus sequence: TGTGTGTG

Best Matches for Motif ID 2 (Highest to Lowest)

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.00486551

Alignment:
CACACACACACA
--CACACACA--

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0100991

Alignment:
TGTGTGTGTGTG
----TGTGTGTG

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0101254

Alignment:
CAYACACACACACA
----CACACACA--

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 2
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0226631

Alignment:
TGTGTGKVTGTGTG
TGTGTGTG------

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0393219

Alignment:
DHAYAYAYRTGTGTRTDH
---------TGTGTGTG-

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0468047

Alignment:
HACAYAYACATRHD
--CACACACA----

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0633924

Alignment:
HHCAAAAACAH
--CACACACA-

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 74
Motif name: twTACATAvw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0691437

Alignment:
DBTATGTAHH
TGTGTGTG--

Original motif     Consensus sequence: HHTACATAVD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0752394

Alignment:
CCCCMAAMCAMCCMCMMMCV
------CACACACA------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0764586

Alignment:
DVTGCATGCATGBH
------TGTGTGTG

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 1 Motif ID: 3 Motif name: Motif 3

Original motif     Consensus sequence: AWATAMA Reverse complement motif     Consensus sequence: TYTATWT

Best Matches for Motif ID 3 (Highest to Lowest)

Dataset #: 4
Motif ID: 83
Motif name: wwTAAAwAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0482178

Alignment:
HHTWTTTADD
TYTATWT---

Original motif     Consensus sequence: DDTAAAWAHH Reverse complement motif     Consensus sequence: HHTWTTTADD

Dataset #: 1
Motif ID: 1
Motif name: Motif 1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0549847

Alignment:
TTTWTTTT
TYTATWT-

Original motif     Consensus sequence: AAAAWAAA Reverse complement motif     Consensus sequence: TTTWTTTT

Dataset #: 4
Motif ID: 74
Motif name: twTACATAvw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.0576662

Alignment:
DBTATGTAHH
TYTATWT---

Original motif     Consensus sequence: HHTACATAVD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0581758

Alignment:
TTTSTTTT
TYTATWT-

Original motif     Consensus sequence: AAAASAAA Reverse complement motif     Consensus sequence: TTTSTTTT

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0581792

Alignment:
TTTTTTTTTTT
--TYTATWT--

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.061865

Alignment:
VHGARAYAGAVV
---AWATAMA--

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 76
Motif name: wwWAAAAAwa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0673905

Alignment:
WWAAAAAAWH
---AWATAMA

Original motif     Consensus sequence: WWAAAAAAWH Reverse complement motif     Consensus sequence: HWTTTTTTWW

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0713162

Alignment:
AAACAAAACAA
AWATAMA----

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 7
Similarity score: 0.0754383

Alignment:
AAAAAAACAAARRA
--AWATAMA-----

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0767049

Alignment:
CACACACACACA
---AWATAMA--

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 1 Motif ID: 4 Motif name: Motif 4

Original motif     Consensus sequence: CYBCCTCC Reverse complement motif     Consensus sequence: GGAGGVMG

Best Matches for Motif ID 4 (Highest to Lowest)

Dataset #: 3
Motif ID: 48
Motif name: EWSR1-FLI1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.022644

Alignment:
GGAAGGAAGGAAGGAAGG
-----GGAGGVMG-----

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC

Dataset #: 3
Motif ID: 32
Motif name: SP1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0247246

Alignment:
CCCCKCCCCC
--CYBCCTCC

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG

Dataset #: 4
Motif ID: 93
Motif name: rrAGGGGGArr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0300296

Alignment:
VVTCCCCCTVV
---CYBCCTCC

Original motif     Consensus sequence: VVAGGGGGAVV Reverse complement motif     Consensus sequence: VVTCCCCCTVV

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0335629

Alignment:
SSCGCCSCCGCCCSS
----CYBCCTCC---

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 3
Motif ID: 52
Motif name: Klf4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0354458

Alignment:
GCCYCMCCCD
-CYBCCTCC-

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0389582

Alignment:
CCGCCGCC
CYBCCTCC

Original motif     Consensus sequence: CCGCCGCC Reverse complement motif     Consensus sequence: GGCGGCGG

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.045829

Alignment:
BBCRCCYCCGBB
----CYBCCTCC

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4
Motif ID: 73
Motif name: ssCGsCTCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0472644

Alignment:
VVCGSCTCBB
-CYBCCTCC-

Original motif     Consensus sequence: VVCGSCTCBB Reverse complement motif     Consensus sequence: BBGAGSCGVV

Dataset #: 3
Motif ID: 57
Motif name: MZF1_5-13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.049303

Alignment:
BTHCCCCTYB
--CYBCCTCC

Original motif     Consensus sequence: BKAGGGGDAD Reverse complement motif     Consensus sequence: BTHCCCCTYB

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0528666

Alignment:
BGRRRGRGGRTGRTTYGGGG
----GGAGGVMG--------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 1 Motif ID: 5 Motif name: Motif 5

Original motif     Consensus sequence: AAAASAAA Reverse complement motif     Consensus sequence: TTTSTTTT

Best Matches for Motif ID 5 (Highest to Lowest)

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0150663

Alignment:
AAAAAAAAAAA
-AAAASAAA--

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 1
Motif ID: 1
Motif name: Motif 1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0155771

Alignment:
TTTWTTTT
TTTSTTTT

Original motif     Consensus sequence: AAAAWAAA Reverse complement motif     Consensus sequence: TTTWTTTT

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.020143

Alignment:
AAAAAAACAAARRA
---AAAASAAA---

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 4
Motif ID: 76
Motif name: wwWAAAAAwa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0517621

Alignment:
WWAAAAAAWH
--AAAASAAA

Original motif     Consensus sequence: WWAAAAAAWH Reverse complement motif     Consensus sequence: HWTTTTTTWW

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0633085

Alignment:
AAACAAAACAA
AAAASAAA---

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0636153

Alignment:
BBTCTKTKTCHB
TTTSTTTT----

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0687134

Alignment:
HHCAAAAACAH
---AAAASAAA

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0740862

Alignment:
CACACACA
AAAASAAA

Original motif     Consensus sequence: CACACACA Reverse complement motif     Consensus sequence: TGTGTGTG

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0762618

Alignment:
DDTAAAAATHD
---AAAASAAA

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0769612

Alignment:
TGTGTGTGTGTKTG
------TTTSTTTT

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 1 Motif ID: 6 Motif name: Motif 6

Original motif     Consensus sequence: CCCCRCCC Reverse complement motif     Consensus sequence: GGGKGGGG

Best Matches for Motif ID 6 (Highest to Lowest)

Dataset #: 3
Motif ID: 52
Motif name: Klf4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0404318

Alignment:
GCCYCMCCCD
-CCCCRCCC-

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD

Dataset #: 4
Motif ID: 89
Motif name: ccCCmCACCcc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0418011

Alignment:
HBCCMCACCHH
--CCCCRCCC-

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Dataset #: 2
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0476511

Alignment:
GGGGMGGG
GGGKGGGG

Original motif     Consensus sequence: CCCRCCCC Reverse complement motif     Consensus sequence: GGGGMGGG

Dataset #: 3
Motif ID: 32
Motif name: SP1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0491071

Alignment:
GGGGGYGGGG
--GGGKGGGG

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0491249

Alignment:
SSCGCCSCCGCCCSS
-----CCCCRCCC--

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0723432

Alignment:
GGCGGCGG
GGGKGGGG

Original motif     Consensus sequence: CCGCCGCC Reverse complement motif     Consensus sequence: GGCGGCGG

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0784423

Alignment:
BBCGCCCSGCVV
----CCCCRCCC

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 3
Motif ID: 51
Motif name: INSM1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0794271

Alignment:
MGCCCCCTGMCA
---CCCCRCCC-

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA

Dataset #: 1
Motif ID: 14
Motif name: Motif 14
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0808211

Alignment:
GKGTGKGC
GGGKGGGG

Original motif     Consensus sequence: GCRCACRC Reverse complement motif     Consensus sequence: GKGTGKGC

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0819499

Alignment:
BBCGGKGGMGBB
---GGGKGGGG-

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 1 Motif ID: 7 Motif name: Motif 7

Original motif     Consensus sequence: ASASAGAA Reverse complement motif     Consensus sequence: TTCTSTST

Best Matches for Motif ID 7 (Highest to Lowest)

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00355249

Alignment:
BBTCTKTKTCHB
-TTCTSTST---

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0313478

Alignment:
TTGTTTTGTTT
---TTCTSTST

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 4
Motif ID: 82
Motif name: rmACAGCAGsr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0319191

Alignment:
DVCTGCTGTVB
---TTCTSTST

Original motif     Consensus sequence: VVACAGCAGVD Reverse complement motif     Consensus sequence: DVCTGCTGTVB

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0398795

Alignment:
TGTGTGTGTGTG
-TTCTSTST---

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0407034

Alignment:
TGTGTGTGTGTG
-TTCTSTST---

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0441956

Alignment:
AAAAAAAAAAA
ASASAGAA---

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0451851

Alignment:
TKKTTTGTTTTTTT
----TTCTSTST--

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0493389

Alignment:
TGTGTGTGTGTKTG
-----TTCTSTST-

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 2
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0494079

Alignment:
CACACAVRCACACA
-----ASASAGAA-

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Dataset #: 3
Motif ID: 48
Motif name: EWSR1-FLI1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0559328

Alignment:
GGAAGGAAGGAAGGAAGG
-------ASASAGAA---

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC

Dataset #: 1 Motif ID: 8 Motif name: Motif 8

Original motif     Consensus sequence: TTTWWAAW Reverse complement motif     Consensus sequence: WTTWWAAA

Best Matches for Motif ID 8 (Highest to Lowest)

Dataset #: 4
Motif ID: 104
Motif name: wtTTWwAAAaw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0

Alignment:
DDTTTWAAAHH
--TTTWWAAW-

Original motif     Consensus sequence: HHTTTWAAADD Reverse complement motif     Consensus sequence: DDTTTWAAAHH

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0386447

Alignment:
DHATTTTTADD
---TTTWWAAW

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 81
Motif name: wwTAAwAAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.05878

Alignment:
HHTTWTTADD
--TTTWWAAW

Original motif     Consensus sequence: DDTAAWAAHH Reverse complement motif     Consensus sequence: HHTTWTTADD

Dataset #: 4
Motif ID: 76
Motif name: wwWAAAAAwa
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0595334

Alignment:
HWTTTTTTWW
--TTTWWAAW

Original motif     Consensus sequence: WWAAAAAAWH Reverse complement motif     Consensus sequence: HWTTTTTTWW

Dataset #: 4
Motif ID: 83
Motif name: wwTAAAwAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0618533

Alignment:
HHTWTTTADD
--TTTWWAAW

Original motif     Consensus sequence: DDTAAAWAHH Reverse complement motif     Consensus sequence: HHTWTTTADD

Dataset #: 4
Motif ID: 71
Motif name: wyATTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0715612

Alignment:
DDTAAAATHD
TTTWWAAW--

Original motif     Consensus sequence: DHATTTTADD Reverse complement motif     Consensus sequence: DDTAAAATHD

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0766993

Alignment:
HHCAAAAACAH
WTTWWAAA---

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0793607

Alignment:
TTTTTTTTTTT
---TTTWWAAW

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 1
Motif ID: 1
Motif name: Motif 1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0832518

Alignment:
TTTWTTTT
TTTWWAAW

Original motif     Consensus sequence: AAAAWAAA Reverse complement motif     Consensus sequence: TTTWTTTT

Dataset #: 4
Motif ID: 98
Motif name: wwTAATTAATTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0855882

Alignment:
HDTAATTAATTAHD
----WTTWWAAA--

Original motif     Consensus sequence: HDTAATTAATTAHD Reverse complement motif     Consensus sequence: DHTAATTAATTADH

Dataset #: 1 Motif ID: 9 Motif name: Motif 9

Original motif     Consensus sequence: GCTGGGAW Reverse complement motif     Consensus sequence: WTCCCAGC

Best Matches for Motif ID 9 (Highest to Lowest)

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0777349

Alignment:
BBGCTGGCCWGBB
--GCTGGGAW---

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 1
Motif ID: 12
Motif name: Motif 12
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0778961

Alignment:
GCTGRCCT
GCTGGGAW

Original motif     Consensus sequence: AGGMCAGC Reverse complement motif     Consensus sequence: GCTGRCCT

Dataset #: 4
Motif ID: 89
Motif name: ccCCmCACCcc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0787949

Alignment:
HBCCMCACCHH
-WTCCCAGC--

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Dataset #: 4
Motif ID: 99
Motif name: sgCTGGCCAGcs
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0902995

Alignment:
VVCTGGCCAGBB
-GCTGGGAW---

Original motif     Consensus sequence: BBCTGGCCAGVV Reverse complement motif     Consensus sequence: VVCTGGCCAGBB

Dataset #: 4
Motif ID: 77
Motif name: ssGCTswGCCms
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0923672

Alignment:
VBGCTSAGCCHB
--GCTGGGAW--

Original motif     Consensus sequence: VBGCTSAGCCHB Reverse complement motif     Consensus sequence: BDGGCTSAGCBV

Dataset #: 3
Motif ID: 51
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0966101

Alignment:
MGCCCCCTGMCA
--WTCCCAGC--

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA

Dataset #: 4
Motif ID: 93
Motif name: rrAGGGGGArr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0986017

Alignment:
VVTCCCCCTVV
-WTCCCAGC--

Original motif     Consensus sequence: VVAGGGGGAVV Reverse complement motif     Consensus sequence: VVTCCCCCTVV

Dataset #: 3
Motif ID: 48
Motif name: EWSR1-FLI1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 8
Similarity score: 0.0991014

Alignment:
GGAAGGAAGGAAGGAAGG
GCTGGGAW----------

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC

Dataset #: 4
Motif ID: 94
Motif name: ssCGCksCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0999463

Alignment:
BBCGSRGCGVV
WTCCCAGC---

Original motif     Consensus sequence: VVCGCKSCGBB Reverse complement motif     Consensus sequence: BBCGSRGCGVV

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.10192

Alignment:
BBCGCCCSGCVV
--WTCCCAGC--

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 1 Motif ID: 10 Motif name: Motif 10

Original motif     Consensus sequence: TAMATA Reverse complement motif     Consensus sequence: TATRTA

Best Matches for Motif ID 10 (Highest to Lowest)

Dataset #: 4
Motif ID: 74
Motif name: twTACATAvw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0118037

Alignment:
HHTACATAVD
--TAMATA--

Original motif     Consensus sequence: HHTACATAVD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 4
Motif ID: 83
Motif name: wwTAAAwAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0306891

Alignment:
DDTAAAWAHH
--TAMATA--

Original motif     Consensus sequence: DDTAAAWAHH Reverse complement motif     Consensus sequence: HHTWTTTADD

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0556351

Alignment:
DDTAAAAATHD
--TAMATA---

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 100
Motif name: wrTGTATACAyw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.063312

Alignment:
HDTGTATACAHD
--TATRTA----

Original motif     Consensus sequence: HDTGTATACAHD Reverse complement motif     Consensus sequence: DHTGTATACADH

Dataset #: 4
Motif ID: 98
Motif name: wwTAATTAATTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0665502

Alignment:
DHTAATTAATTADH
------TAMATA--

Original motif     Consensus sequence: HDTAATTAATTAHD Reverse complement motif     Consensus sequence: DHTAATTAATTADH

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0713843

Alignment:
TGTGTGTG
--TATRTA

Original motif     Consensus sequence: CACACACA Reverse complement motif     Consensus sequence: TGTGTGTG

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0717552

Alignment:
DHAYAYAYRTGTGTRTDH
-----------TATRTA-

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0734948

Alignment:
HACAYAYACATRHD
------TAMATA--

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 1
Motif ID: 8
Motif name: Motif 8
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.073632

Alignment:
TTTWWAAW
--TATRTA

Original motif     Consensus sequence: TTTWWAAW Reverse complement motif     Consensus sequence: WTTWWAAA

Dataset #: 1
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0746703

Alignment:
TYTATWT
-TAMATA

Original motif     Consensus sequence: AWATAMA Reverse complement motif     Consensus sequence: TYTATWT

Dataset #: 1 Motif ID: 11 Motif name: Motif 11

Original motif     Consensus sequence: CCGCCGCC Reverse complement motif     Consensus sequence: GGCGGCGG

Best Matches for Motif ID 11 (Highest to Lowest)

Dataset #: 4
Motif ID: 78
Motif name: sssCGssGCsss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0257637

Alignment:
SSSCGSSGCSSS
--CCGCCGCC--

Original motif     Consensus sequence: SSSCGSSGCSSS Reverse complement motif     Consensus sequence: SSSGCSSCGSSS

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0356841

Alignment:
SSGGGCGGSGGCGSS
---GGCGGCGG----

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 1
Motif ID: 6
Motif name: Motif 6
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0379682

Alignment:
GGGKGGGG
GGCGGCGG

Original motif     Consensus sequence: CCCCRCCC Reverse complement motif     Consensus sequence: GGGKGGGG

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0392404

Alignment:
BBCGGKGGMGBB
---GGCGGCGG-

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4
Motif ID: 94
Motif name: ssCGCksCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0444299

Alignment:
VVCGCKSCGBB
--GGCGGCGG-

Original motif     Consensus sequence: VVCGCKSCGBB Reverse complement motif     Consensus sequence: BBCGSRGCGVV

Dataset #: 3
Motif ID: 28
Motif name: Zfx
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.049392

Alignment:
BBVGCCBVGGCCTV
----CCGCCGCC--

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0505097

Alignment:
CYBCCTCC
CCGCCGCC

Original motif     Consensus sequence: CYBCCTCC Reverse complement motif     Consensus sequence: GGAGGVMG

Dataset #: 3
Motif ID: 52
Motif name: Klf4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0512458

Alignment:
GCCYCMCCCD
-CCGCCGCC-

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD

Dataset #: 3
Motif ID: 32
Motif name: SP1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0543239

Alignment:
GGGGGYGGGG
GGCGGCGG--

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG

Dataset #: 3
Motif ID: 51
Motif name: INSM1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0580255

Alignment:
MGCCCCCTGMCA
---CCGCCGCC-

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA

Dataset #: 1 Motif ID: 12 Motif name: Motif 12

Original motif     Consensus sequence: AGGMCAGC Reverse complement motif     Consensus sequence: GCTGRCCT

Best Matches for Motif ID 12 (Highest to Lowest)

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0329398

Alignment:
BBCWGGCCAGCBB
---AGGMCAGC--

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 3
Motif ID: 59
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 8
Similarity score: 0.0348586

Alignment:
GTTGACCTTTGACCTTT
GCTGRCCT---------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0382252

Alignment:
TTCAGCACCATGGACAGCKCC
----------AGGMCAGC---

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 99
Motif name: sgCTGGCCAGcs
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0441629

Alignment:
BBCTGGCCAGVV
-GCTGRCCT---

Original motif     Consensus sequence: BBCTGGCCAGVV Reverse complement motif     Consensus sequence: VVCTGGCCAGBB

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0543245

Alignment:
MGGTCAGGGTGACCTRDBHV
-------GCTGRCCT-----

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4
Motif ID: 70
Motif name: mkARGCCACG
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0574643

Alignment:
CGTGGCCTYG
GCTGRCCT--

Original motif     Consensus sequence: CKAGGCCACG Reverse complement motif     Consensus sequence: CGTGGCCTYG

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.0637872

Alignment:
BAGGYCABHBTGACCKHV
--------GCTGRCCT--

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0653089

Alignment:
WTCCCAGC
AGGMCAGC

Original motif     Consensus sequence: GCTGGGAW Reverse complement motif     Consensus sequence: WTCCCAGC

Dataset #: 3
Motif ID: 53
Motif name: MIZF
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0689211

Alignment:
GCGGACGTTV
GCTGRCCT--

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV

Dataset #: 4
Motif ID: 77
Motif name: ssGCTswGCCms
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0700771

Alignment:
VBGCTSAGCCHB
--GCTGRCCT--

Original motif     Consensus sequence: VBGCTSAGCCHB Reverse complement motif     Consensus sequence: BDGGCTSAGCBV

Dataset #: 1 Motif ID: 13 Motif name: Motif 13

Original motif     Consensus sequence: GAGRCAGR Reverse complement motif     Consensus sequence: MCTGKCTC

Best Matches for Motif ID 13 (Highest to Lowest)

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0131318

Alignment:
VHGARAYAGAVV
--GAGRCAGR--

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 73
Motif name: ssCGsCTCss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0334555

Alignment:
BBGAGSCGVV
--GAGRCAGR

Original motif     Consensus sequence: VVCGSCTCBB Reverse complement motif     Consensus sequence: BBGAGSCGVV

Dataset #: 3
Motif ID: 48
Motif name: EWSR1-FLI1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0397014

Alignment:
GGAAGGAAGGAAGGAAGG
------GAGRCAGR----

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC

Dataset #: 4
Motif ID: 99
Motif name: sgCTGGCCAGcs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0475948

Alignment:
VVCTGGCCAGBB
-MCTGKCTC---

Original motif     Consensus sequence: BBCTGGCCAGVV Reverse complement motif     Consensus sequence: VVCTGGCCAGBB

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.049302

Alignment:
GGYGCTGTCCATGGTGCTGAA
---MCTGKCTC----------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 2
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0551203

Alignment:
GGGGMGGG
GAGRCAGR

Original motif     Consensus sequence: CCCRCCCC Reverse complement motif     Consensus sequence: GGGGMGGG

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.055328

Alignment:
BBCWGGCCAGCBB
-MCTGKCTC----

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 4
Motif ID: 93
Motif name: rrAGGGGGArr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0555608

Alignment:
VVAGGGGGAVV
---GAGRCAGR

Original motif     Consensus sequence: VVAGGGGGAVV Reverse complement motif     Consensus sequence: VVTCCCCCTVV

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.055859

Alignment:
VDBHMAGGTCACCCTGACCY
------------MCTGKCTC

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 1
Motif ID: 12
Motif name: Motif 12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0588565

Alignment:
GCTGRCCT
MCTGKCTC

Original motif     Consensus sequence: AGGMCAGC Reverse complement motif     Consensus sequence: GCTGRCCT

Dataset #: 1 Motif ID: 14 Motif name: Motif 14

Original motif     Consensus sequence: GCRCACRC Reverse complement motif     Consensus sequence: GKGTGKGC

Best Matches for Motif ID 14 (Highest to Lowest)

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0307099

Alignment:
CAYACACACACACA
---GCRCACRC---

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0357914

Alignment:
CACACACACACA
-GCRCACRC---

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0366948

Alignment:
CACACACACACA
-GCRCACRC---

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 3
Motif ID: 52
Motif name: Klf4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.03983

Alignment:
DGGGYGKGGC
-GKGTGKGC-

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD

Dataset #: 2
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0418776

Alignment:
CACACAVRCACACA
-----GCRCACRC-

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Dataset #: 3
Motif ID: 44
Motif name: Egr1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0429433

Alignment:
HGCGTGGGCGK
-GKGTGKGC--

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH

Dataset #: 1
Motif ID: 6
Motif name: Motif 6
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0496623

Alignment:
GGGKGGGG
GKGTGKGC

Original motif     Consensus sequence: CCCCRCCC Reverse complement motif     Consensus sequence: GGGKGGGG

Dataset #: 4
Motif ID: 89
Motif name: ccCCmCACCcc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0505252

Alignment:
DDGGTGRGGBD
-GKGTGKGC--

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Dataset #: 4
Motif ID: 96
Motif name: yrTGTGCACAyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0537384

Alignment:
BVTGTGCACABV
---GCRCACRC-

Original motif     Consensus sequence: BVTGTGCACABV Reverse complement motif     Consensus sequence: BBTGTGCACAVV

Dataset #: 4
Motif ID: 65
Motif name: ssCGrGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.067702

Alignment:
VBCGCMCGSV
-GCRCACRC-

Original motif     Consensus sequence: VSCGRGCGBV Reverse complement motif     Consensus sequence: VBCGCMCGSV

Dataset #: 1 Motif ID: 15 Motif name: Motif 15

Original motif     Consensus sequence: GRAAATG Reverse complement motif     Consensus sequence: CATTTKC

Best Matches for Motif ID 15 (Highest to Lowest)

Dataset #: 4
Motif ID: 71
Motif name: wyATTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0397876

Alignment:
DHATTTTADD
-CATTTKC--

Original motif     Consensus sequence: DHATTTTADD Reverse complement motif     Consensus sequence: DDTAAAATHD

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0408373

Alignment:
DDTAAAAATHD
---GRAAATG-

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 68
Motif name: dwCTTTTCwy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0424119

Alignment:
DHCTTTTCHH
-CATTTKC--

Original motif     Consensus sequence: DHCTTTTCHH Reverse complement motif     Consensus sequence: DHGAAAAGHD

Dataset #: 4
Motif ID: 76
Motif name: wwWAAAAAwa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0627776

Alignment:
WWAAAAAAWH
---GRAAATG

Original motif     Consensus sequence: WWAAAAAAWH Reverse complement motif     Consensus sequence: HWTTTTTTWW

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.0639234

Alignment:
HDAMACACAKKTKTKTHD
-------CATTTKC----

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 4
Motif ID: 104
Motif name: wtTTWwAAAaw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0667775

Alignment:
HHTTTWAAADD
----GRAAATG

Original motif     Consensus sequence: HHTTTWAAADD Reverse complement motif     Consensus sequence: DDTTTWAAAHH

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0672334

Alignment:
TGRCCTKTGHCCKAB
---CATTTKC-----

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0684709

Alignment:
BBTCTKTKTCHB
---CATTTKC--

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 3
Motif ID: 38
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0685715

Alignment:
TGAMCTTTGMMCYT
---CATTTKC----

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 4
Motif ID: 96
Motif name: yrTGTGCACAyr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.0691109

Alignment:
BVTGTGCACABV
CATTTKC-----

Original motif     Consensus sequence: BVTGTGCACABV Reverse complement motif     Consensus sequence: BBTGTGCACAVV

Dataset #: 1 Motif ID: 16 Motif name: Motif 16

Original motif     Consensus sequence: CTGDGTTC Reverse complement motif     Consensus sequence: GAACDCAG

Best Matches for Motif ID 16 (Highest to Lowest)

Dataset #: 3
Motif ID: 33
Motif name: RXRAVDR
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0341587

Alignment:
GGGTCAWBGRGTTCA
------CTGDGTTC-

Original motif     Consensus sequence: GGGTCAWBGRGTTCA Reverse complement motif     Consensus sequence: TGAACKCBWTGACCC

Dataset #: 3
Motif ID: 48
Motif name: EWSR1-FLI1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0488413

Alignment:
GGAAGGAAGGAAGGAAGG
-----GAACDCAG-----

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC

Dataset #: 3
Motif ID: 38
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0594848

Alignment:
TGAMCTTTGMMCYT
-GAACDCAG-----

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0618424

Alignment:
VRVDGGHACAVDDKGTHCTDWH
----------CTGDGTTC----

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 4
Motif ID: 77
Motif name: ssGCTswGCCms
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0677701

Alignment:
BDGGCTSAGCBV
-GAACDCAG---

Original motif     Consensus sequence: VBGCTSAGCCHB Reverse complement motif     Consensus sequence: BDGGCTSAGCBV

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0698387

Alignment:
GGYGCTGTCCATGGTGCTGAA
---------CTGDGTTC----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0714255

Alignment:
BBTCTKTKTCHB
---CTGDGTTC-

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 82
Motif name: rmACAGCAGsr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0725605

Alignment:
VVACAGCAGVD
-GAACDCAG--

Original motif     Consensus sequence: VVACAGCAGVD Reverse complement motif     Consensus sequence: DVCTGCTGTVB

Dataset #: 3
Motif ID: 59
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0734192

Alignment:
AAAGGTCAAAGGTCAAC
------CTGDGTTC---

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0745877

Alignment:
CAYACACACACACA
---GAACDCAG---

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 2 Motif ID: 17 Motif name: Motif 17

Original motif     Consensus sequence: RGGAAR Reverse complement motif     Consensus sequence: MTTCCK

Best Matches for Motif ID 17 (Highest to Lowest)

Dataset #: 3
Motif ID: 48
Motif name: EWSR1-FLI1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 12
Number of overlap: 6
Similarity score: 0.0146511

Alignment:
GGAAGGAAGGAAGGAAGG
-----------RGGAAR-

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC

Dataset #: 4
Motif ID: 93
Motif name: rrAGGGGGArr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0442472

Alignment:
VVAGGGGGAVV
-----RGGAAR

Original motif     Consensus sequence: VVAGGGGGAVV Reverse complement motif     Consensus sequence: VVTCCCCCTVV

Dataset #: 4
Motif ID: 68
Motif name: dwCTTTTCwy
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0560955

Alignment:
DHGAAAAGHD
RGGAAR----

Original motif     Consensus sequence: DHCTTTTCHH Reverse complement motif     Consensus sequence: DHGAAAAGHD

Dataset #: 3
Motif ID: 53
Motif name: MIZF
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0608243

Alignment:
BAACGTCCGC
---MTTCCK-

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0620308

Alignment:
GGAGGVMG
RGGAAR--

Original motif     Consensus sequence: CYBCCTCC Reverse complement motif     Consensus sequence: GGAGGVMG

Dataset #: 3
Motif ID: 57
Motif name: MZF1_5-13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0753789

Alignment:
BKAGGGGDAD
----RGGAAR

Original motif     Consensus sequence: BKAGGGGDAD Reverse complement motif     Consensus sequence: BTHCCCCTYB

Dataset #: 3
Motif ID: 58
Motif name: NFKB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0757695

Alignment:
GGGGAAKCCCC
-RGGAAR----

Original motif     Consensus sequence: GGGGRTTCCCC Reverse complement motif     Consensus sequence: GGGGAAKCCCC

Dataset #: 1
Motif ID: 13
Motif name: Motif 13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0767512

Alignment:
GAGRCAGR
-RGGAAR-

Original motif     Consensus sequence: GAGRCAGR Reverse complement motif     Consensus sequence: MCTGKCTC

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0768115

Alignment:
BBTCTKTKTCHB
MTTCCK------

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 89
Motif name: ccCCmCACCcc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0794812

Alignment:
DDGGTGRGGBD
-RGGAAR----

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Dataset #: 2 Motif ID: 18 Motif name: Motif 18

Original motif     Consensus sequence: AMACA Reverse complement motif     Consensus sequence: TGTRT

Best Matches for Motif ID 18 (Highest to Lowest)

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 5
Similarity score: 0

Alignment:
CACACACA
---AMACA

Original motif     Consensus sequence: CACACACA Reverse complement motif     Consensus sequence: TGTGTGTG

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 5
Similarity score: 0.0148279

Alignment:
TGTGTGTGTGTG
--TGTRT-----

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.0192752

Alignment:
CAYACACACACACA
-----AMACA----

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 5
Similarity score: 0.0228414

Alignment:
CACACACACACA
---AMACA----

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 2
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 5
Similarity score: 0.0233505

Alignment:
CACACAVRCACACA
---------AMACA

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 5
Similarity score: 0.0274014

Alignment:
AAACAAAACAA
-----AMACA-

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.0291354

Alignment:
HHCAAAAACAH
-----AMACA-

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 5
Similarity score: 0.0293401

Alignment:
HDAMACACAKKTKTKTHD
----AMACA---------

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 4
Motif ID: 100
Motif name: wrTGTATACAyw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 5
Similarity score: 0.0302831

Alignment:
HDTGTATACAHD
--TGTRT-----

Original motif     Consensus sequence: HDTGTATACAHD Reverse complement motif     Consensus sequence: DHTGTATACADH

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.0378142

Alignment:
AAAASAAA
-AMACA--

Original motif     Consensus sequence: AAAASAAA Reverse complement motif     Consensus sequence: TTTSTTTT

Dataset #: 2 Motif ID: 19 Motif name: Motif 19

Original motif     Consensus sequence: AGSCWGG Reverse complement motif     Consensus sequence: CCWGSCT

Best Matches for Motif ID 19 (Highest to Lowest)

Dataset #: 1
Motif ID: 13
Motif name: Motif 13
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0206869

Alignment:
MCTGKCTC
CCWGSCT-

Original motif     Consensus sequence: GAGRCAGR Reverse complement motif     Consensus sequence: MCTGKCTC

Dataset #: 3
Motif ID: 48
Motif name: EWSR1-FLI1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.0395671

Alignment:
GGAAGGAAGGAAGGAAGG
-------AGSCWGG----

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.0484872

Alignment:
BBCWGGCCAGCBB
------CCWGSCT

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 3
Motif ID: 51
Motif name: INSM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0494688

Alignment:
TGYCAGGGGGCR
AGSCWGG-----

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA

Dataset #: 4
Motif ID: 73
Motif name: ssCGsCTCss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.054651

Alignment:
BBGAGSCGVV
---AGSCWGG

Original motif     Consensus sequence: VVCGSCTCBB Reverse complement motif     Consensus sequence: BBGAGSCGVV

Dataset #: 4
Motif ID: 90
Motif name: ssCGsCwsCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0578314

Alignment:
BBCGSCWSCBB
--AGSCWGG--

Original motif     Consensus sequence: BBCGSCWSCBB Reverse complement motif     Consensus sequence: BBGSWGSCGBB

Dataset #: 3
Motif ID: 64
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0669354

Alignment:
CCAGYYHVADCCRG
CCWGSCT-------

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 7
Similarity score: 0.0693747

Alignment:
TTCAGCACCATGGACAGCKCC
------AGSCWGG--------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 32
Motif name: SP1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0695377

Alignment:
CCCCKCCCCC
-CCWGSCT--

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG

Dataset #: 4
Motif ID: 99
Motif name: sgCTGGCCAGcs
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0697712

Alignment:
BBCTGGCCAGVV
-CCWGSCT----

Original motif     Consensus sequence: BBCTGGCCAGVV Reverse complement motif     Consensus sequence: VVCTGGCCAGBB

Dataset #: 2 Motif ID: 20 Motif name: Motif 20

Original motif     Consensus sequence: CTCTGY Reverse complement motif     Consensus sequence: KCAGAG

Best Matches for Motif ID 20 (Highest to Lowest)

Dataset #: 4
Motif ID: 77
Motif name: ssGCTswGCCms
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0323407

Alignment:
VBGCTSAGCCHB
---CTCTGY---

Original motif     Consensus sequence: VBGCTSAGCCHB Reverse complement motif     Consensus sequence: BDGGCTSAGCBV

Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0352938

Alignment:
ASASAGAA
--KCAGAG

Original motif     Consensus sequence: ASASAGAA Reverse complement motif     Consensus sequence: TTCTSTST

Dataset #: 3
Motif ID: 59
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0398495

Alignment:
AAAGGTCAAAGGTCAAC
-----KCAGAG------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0415907

Alignment:
BTRGGDCARAGGKCA
-----KCAGAG----

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0430865

Alignment:
CCGCCGCC
-CTCTGY-

Original motif     Consensus sequence: CCGCCGCC Reverse complement motif     Consensus sequence: GGCGGCGG

Dataset #: 4
Motif ID: 72
Motif name: ssCKCwsCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0439226

Alignment:
BVCGCWSCGBV
----CTCTGY-

Original motif     Consensus sequence: BVCGCWSCGBV Reverse complement motif     Consensus sequence: VBCGSWGCGVB

Dataset #: 3
Motif ID: 38
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0462597

Alignment:
AKGYYCAAAGRTCA
----KCAGAG----

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0467436

Alignment:
BBTCTKTKTCHB
-CTCTGY-----

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 3
Motif ID: 50
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0481824

Alignment:
RGGBCAAAGKYCA
---KCAGAG----

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3
Motif ID: 53
Motif name: MIZF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.049747

Alignment:
BAACGTCCGC
----CTCTGY

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV

Dataset #: 2 Motif ID: 21 Motif name: Motif 21

Original motif     Consensus sequence: ATKTM Reverse complement motif     Consensus sequence: RARAT

Best Matches for Motif ID 21 (Highest to Lowest)

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 5
Similarity score: 0.0065927

Alignment:
CATTTKC
-ATKTM-

Original motif     Consensus sequence: GRAAATG Reverse complement motif     Consensus sequence: CATTTKC

Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 5
Similarity score: 0.0217628

Alignment:
TAMATA
-RARAT

Original motif     Consensus sequence: TAMATA Reverse complement motif     Consensus sequence: TATRTA

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 5
Similarity score: 0.0314602

Alignment:
DDTAAAAATHD
----RARAT--

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 71
Motif name: wyATTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.0314958

Alignment:
DDTAAAATHD
---RARAT--

Original motif     Consensus sequence: DHATTTTADD Reverse complement motif     Consensus sequence: DDTAAAATHD

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 5
Similarity score: 0.0326182

Alignment:
VHGARAYAGAVV
--RARAT-----

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 74
Motif name: twTACATAvw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 5
Similarity score: 0.0335447

Alignment:
DBTATGTAHH
---ATKTM--

Original motif     Consensus sequence: HHTACATAVD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 4
Motif ID: 83
Motif name: wwTAAAwAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 5
Similarity score: 0.0514182

Alignment:
HHTWTTTADD
---ATKTM--

Original motif     Consensus sequence: DDTAAAWAHH Reverse complement motif     Consensus sequence: HHTWTTTADD

Dataset #: 4
Motif ID: 76
Motif name: wwWAAAAAwa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 5
Similarity score: 0.0597589

Alignment:
WWAAAAAAWH
----RARAT-

Original motif     Consensus sequence: WWAAAAAAWH Reverse complement motif     Consensus sequence: HWTTTTTTWW

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 5
Similarity score: 0.0609742

Alignment:
DVTGCATGCATGBH
---------ATKTM

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 4
Motif ID: 100
Motif name: wrTGTATACAyw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 5
Similarity score: 0.0620607

Alignment:
DHTGTATACADH
-ATKTM------

Original motif     Consensus sequence: HDTGTATACAHD Reverse complement motif     Consensus sequence: DHTGTATACADH

Dataset #: 2 Motif ID: 22 Motif name: Motif 22

Original motif     Consensus sequence: CMGCRGC Reverse complement motif     Consensus sequence: GCKGCYG

Best Matches for Motif ID 22 (Highest to Lowest)

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0224079

Alignment:
CCGCCGCC
CMGCRGC-

Original motif     Consensus sequence: CCGCCGCC Reverse complement motif     Consensus sequence: GGCGGCGG

Dataset #: 4
Motif ID: 82
Motif name: rmACAGCAGsr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0263091

Alignment:
VVACAGCAGVD
---CMGCRGC-

Original motif     Consensus sequence: VVACAGCAGVD Reverse complement motif     Consensus sequence: DVCTGCTGTVB

Dataset #: 4
Motif ID: 94
Motif name: ssCGCksCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.0468409

Alignment:
BBCGSRGCGVV
-CMGCRGC---

Original motif     Consensus sequence: VVCGCKSCGBB Reverse complement motif     Consensus sequence: BBCGSRGCGVV

Dataset #: 4
Motif ID: 90
Motif name: ssCGsCwsCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0481413

Alignment:
BBGSWGSCGBB
--GCKGCYG--

Original motif     Consensus sequence: BBCGSCWSCBB Reverse complement motif     Consensus sequence: BBGSWGSCGBB

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 13
Number of overlap: 7
Similarity score: 0.0604814

Alignment:
TTCAGCACCATGGACAGCKCC
--CMGCRGC------------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 78
Motif name: sssCGssGCsss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.0620984

Alignment:
SSSCGSSGCSSS
--CMGCRGC---

Original motif     Consensus sequence: SSSCGSSGCSSS Reverse complement motif     Consensus sequence: SSSGCSSCGSSS

Dataset #: 4
Motif ID: 84
Motif name: wsAGCTACwy
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.0669388

Alignment:
VHGTAGCTVD
CMGCRGC---

Original motif     Consensus sequence: DVAGCTACHB Reverse complement motif     Consensus sequence: VHGTAGCTVD

Dataset #: 1
Motif ID: 6
Motif name: Motif 6
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0712961

Alignment:
CCCCRCCC
CMGCRGC-

Original motif     Consensus sequence: CCCCRCCC Reverse complement motif     Consensus sequence: GGGKGGGG

Dataset #: 3
Motif ID: 53
Motif name: MIZF
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0721831

Alignment:
GCGGACGTTV
GCKGCYG---

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV

Dataset #: 4
Motif ID: 72
Motif name: ssCKCwsCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0730352

Alignment:
VBCGSWGCGVB
-CMGCRGC---

Original motif     Consensus sequence: BVCGCWSCGBV Reverse complement motif     Consensus sequence: VBCGSWGCGVB

Dataset #: 2 Motif ID: 23 Motif name: Motif 23

Original motif     Consensus sequence: CCCRCCCC Reverse complement motif     Consensus sequence: GGGGMGGG

Best Matches for Motif ID 23 (Highest to Lowest)

Dataset #: 1
Motif ID: 6
Motif name: Motif 6
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0476511

Alignment:
GGGKGGGG
GGGGMGGG

Original motif     Consensus sequence: CCCCRCCC Reverse complement motif     Consensus sequence: GGGKGGGG

Dataset #: 3
Motif ID: 32
Motif name: SP1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.05625

Alignment:
CCCCKCCCCC
-CCCRCCCC-

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG

Dataset #: 3
Motif ID: 52
Motif name: Klf4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0600533

Alignment:
DGGGYGKGGC
GGGGMGGG--

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD

Dataset #: 4
Motif ID: 89
Motif name: ccCCmCACCcc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0605366

Alignment:
HBCCMCACCHH
---CCCRCCCC

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0617989

Alignment:
SSCGCCSCCGCCCSS
------CCCRCCCC-

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0740354

Alignment:
BBCRCCYCCGBB
CCCRCCCC----

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 3
Motif ID: 44
Motif name: Egr1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0789263

Alignment:
YCGCCCACGCH
---CCCRCCCC

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0848347

Alignment:
VVGCSGGGCGBB
----GGGGMGGG

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0902899

Alignment:
CCCCMAAMCAMCCMCMMMCV
------CCCRCCCC------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 94
Motif name: ssCGCksCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0961855

Alignment:
BBCGSRGCGVV
---GGGGMGGG

Original motif     Consensus sequence: VVCGCKSCGBB Reverse complement motif     Consensus sequence: BBCGSRGCGVV

Dataset #: 2 Motif ID: 24 Motif name: Motif 24

Original motif     Consensus sequence: CTGGGA Reverse complement motif     Consensus sequence: TCCCAG

Best Matches for Motif ID 24 (Highest to Lowest)

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0

Alignment:
GCTGGGAW
-CTGGGA-

Original motif     Consensus sequence: GCTGGGAW Reverse complement motif     Consensus sequence: WTCCCAGC

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0575099

Alignment:
GGYGCTGTCCATGGTGCTGAA
-------TCCCAG--------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 93
Motif name: rrAGGGGGArr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0578035

Alignment:
VVTCCCCCTVV
--TCCCAG---

Original motif     Consensus sequence: VVAGGGGGAVV Reverse complement motif     Consensus sequence: VVTCCCCCTVV

Dataset #: 3
Motif ID: 39
Motif name: MZF1_1-4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0598868

Alignment:
TCCCCV
TCCCAG

Original motif     Consensus sequence: BGGGGA Reverse complement motif     Consensus sequence: TCCCCV

Dataset #: 4
Motif ID: 103
Motif name: ccCCAGTGCAbr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0660266

Alignment:
HVCCAGTGCABD
TCCCAG------

Original motif     Consensus sequence: HVCCAGTGCABD Reverse complement motif     Consensus sequence: DBTGCACTGGVD

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0691671

Alignment:
BGRRRGRGGRTGRTTYGGGG
--------------CTGGGA

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 1
Motif ID: 16
Motif name: Motif 16
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0726527

Alignment:
CTGDGTTC
CTGGGA--

Original motif     Consensus sequence: CTGDGTTC Reverse complement motif     Consensus sequence: GAACDCAG

Dataset #: 3
Motif ID: 51
Motif name: INSM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0740406

Alignment:
TGYCAGGGGGCR
---CTGGGA---

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA

Dataset #: 3
Motif ID: 29
Motif name: Zfp423
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0806694

Alignment:
GYRYCCMTKGGYRSC
---TCCCAG------

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC

Dataset #: 4
Motif ID: 99
Motif name: sgCTGGCCAGcs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0827238

Alignment:
VVCTGGCCAGBB
----TCCCAG--

Original motif     Consensus sequence: BBCTGGCCAGVV Reverse complement motif     Consensus sequence: VVCTGGCCAGBB

Dataset #: 2 Motif ID: 25 Motif name: Motif 25

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Best Matches for Motif ID 25 (Highest to Lowest)

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0190992

Alignment:
CAYACACACACACA
CACACAVRCACACA

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0790984

Alignment:
HACAYAYACATRHD
CACACAVRCACACA

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0889603

Alignment:
CCCCMAAMCAMCCMCMMMCV
----CACACAVRCACACA--

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0894862

Alignment:
DHAYAYAYRTGTGTRTDH
-TGTGTGKVTGTGTG---

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0983454

Alignment:
HVCATGCATGCABD
CACACAVRCACACA

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.581031

Alignment:
TKKTTTGTTTTTTT-
-TGTGTGKVTGTGTG

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 3
Motif ID: 33
Motif name: RXRAVDR
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.596059

Alignment:
-GGGTCAWBGRGTTCA
TGTGTGKVTGTGTG--

Original motif     Consensus sequence: GGGTCAWBGRGTTCA Reverse complement motif     Consensus sequence: TGAACKCBWTGACCC

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.600159

Alignment:
SSCGCCSCCGCCCSS-
--CACACAVRCACACA

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 1.01986

Alignment:
TGTGTGTGTGTG--
TGTGTGKVTGTGTG

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 1.02642

Alignment:
TGTGTGTGTGTG--
TGTGTGKVTGTGTG

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 2 Motif ID: 26 Motif name: Motif 26

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Best Matches for Motif ID 26 (Highest to Lowest)

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0683766

Alignment:
DHKATGTKTKTGTD
TKKTTTGTTTTTTT

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 3
Motif ID: 48
Motif name: EWSR1-FLI1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0745773

Alignment:
GGAAGGAAGGAAGGAAGG
--AAAAAAACAAARRA--

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC

Dataset #: 2
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.561185

Alignment:
-CACACAVRCACACA
AAAAAAACAAARRA-

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.563745

Alignment:
-TGTGTGTGTGTKTG
TKKTTTGTTTTTTT-

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 3
Motif ID: 59
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 13
Similarity score: 0.567794

Alignment:
-AAAGGTCAAAGGTCAAC
AAAAAAACAAARRA----

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 4
Motif ID: 98
Motif name: wwTAATTAATTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.570142

Alignment:
-DHTAATTAATTADH
AAAAAAACAAARRA-

Original motif     Consensus sequence: HDTAATTAATTAHD Reverse complement motif     Consensus sequence: DHTAATTAATTADH

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.575193

Alignment:
-BTRGGDCARAGGKCA
AAAAAAACAAARRA--

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 13
Similarity score: 0.576204

Alignment:
VRVDGGHACAVDDKGTHCTDWH-
---------TKKTTTGTTTTTTT

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 12
Similarity score: 1.06681

Alignment:
--HDAMACACAKKTKTKTHD
AAAAAAACAAARRA------

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 1.07221

Alignment:
--BBTCTKTKTCHB
TKKTTTGTTTTTTT

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 2 Motif ID: 27 Motif name: Motif 27

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Best Matches for Motif ID 27 (Highest to Lowest)

Dataset #: 2
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0198904

Alignment:
CACACAVRCACACA
CAYACACACACACA

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0728259

Alignment:
HACAYAYACATRHD
CAYACACACACACA

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0866168

Alignment:
CCCCMAAMCAMCCMCMMMCV
----CAYACACACACACA--

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0949484

Alignment:
DHAYAYAYRTGTGTRTDH
---TGTGTGTGTGTKTG-

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0966618

Alignment:
HVCATGCATGCABD
CAYACACACACACA

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.584382

Alignment:
AAAAAAACAAARRA-
-CAYACACACACACA

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 1

Alignment:
TGTGTGTGTGTG--
TGTGTGTGTGTKTG

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 1.00916

Alignment:
TGTGTGTGTGTG--
TGTGTGTGTGTKTG

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 1.08698

Alignment:
BBTCTKTKTCHB--
TGTGTGTGTGTKTG

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 3
Motif ID: 51
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 1.09649

Alignment:
--TGYCAGGGGGCR
TGTGTGTGTGTKTG

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA

Dataset #: 3 Motif ID: 28 Motif name: Zfx

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Best Matches for Motif ID 28 (Highest to Lowest)

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0478501

Alignment:
SSCGCCSCCGCCCSS
BBVGCCBVGGCCTV-

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 14
Similarity score: 0.0611182

Alignment:
DGVBCABTGDWGCGKRRCSR
--BBVGCCBVGGCCTV----

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0635714

Alignment:
BAGGYCABHBTGACCKHV
---BBVGCCBVGGCCTV-

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 14
Similarity score: 0.0722733

Alignment:
MGGTCAGGGTGACCTRDBHV
--BBVGCCBVGGCCTV----

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 64
Motif name: Tcfcp2l1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0732898

Alignment:
CCAGYYHVADCCRG
BBVGCCBVGGCCTV

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Dataset #: 3
Motif ID: 29
Motif name: Zfp423
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0747812

Alignment:
GYRYCCMTKGGYRSC
-VAGGCCBBGGCVBB

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC

Dataset #: 3
Motif ID: 37
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0796879

Alignment:
CCCCCTTGGGCCCC
BBVGCCBVGGCCTV

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 14
Similarity score: 0.0812253

Alignment:
GGYGCTGTCCATGGTGCTGAA
----VAGGCCBBGGCVBB---

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0832838

Alignment:
HWDAGHACRHHVTGTHCCHVMV
-----VAGGCCBBGGCVBB---

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0836605

Alignment:
TGRCCTKTGHCCKAB
BBVGCCBVGGCCTV-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3 Motif ID: 29 Motif name: Zfp423

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC

Best Matches for Motif ID 29 (Highest to Lowest)

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 15
Similarity score: 0.0465445

Alignment:
HWDAGHACRHHVTGTHCCHVMV
---GSMMCCYARGGKKKC----

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 15
Similarity score: 0.0466076

Alignment:
DGVBCABTGDWGCGKRRCSR
--GSMMCCYARGGKKKC---

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 15
Similarity score: 0.0475403

Alignment:
TTCAGCACCATGGACAGCKCC
---GYRYCCMTKGGYRSC---

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 15
Similarity score: 0.0497128

Alignment:
DHAYAYAYRTGTGTRTDH
--GYRYCCMTKGGYRSC-

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 3
Motif ID: 33
Motif name: RXRAVDR
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.053047

Alignment:
GGGTCAWBGRGTTCA
GYRYCCMTKGGYRSC

Original motif     Consensus sequence: GGGTCAWBGRGTTCA Reverse complement motif     Consensus sequence: TGAACKCBWTGACCC

Dataset #: 3
Motif ID: 37
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.534468

Alignment:
GGGGCCCAAGGGGG-
GSMMCCYARGGKKKC

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC

Dataset #: 3
Motif ID: 28
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.54645

Alignment:
-VAGGCCBBGGCVBB
GYRYCCMTKGGYRSC

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 13
Similarity score: 1.03908

Alignment:
--VDBHMAGGTCACCCTGACCY
GYRYCCMTKGGYRSC-------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 13
Similarity score: 1.05606

Alignment:
BGRRRGRGGRTGRTTYGGGG--
-------GYRYCCMTKGGYRSC

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 1.54285

Alignment:
---BBCGGKGGMGBB
GYRYCCMTKGGYRSC

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 3 Motif ID: 30 Motif name: ZEB1

Original motif     Consensus sequence: CACCTD Reverse complement motif     Consensus sequence: HAGGTG

Best Matches for Motif ID 30 (Highest to Lowest)

Dataset #: 3
Motif ID: 62
Motif name: RORA_1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0141289

Alignment:
TGACCTDVWT
-CACCTD---

Original motif     Consensus sequence: AWVDAGGTCA Reverse complement motif     Consensus sequence: TGACCTDVWT

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0143133

Alignment:
GGYGCTGTCCATGGTGCTGAA
----------HAGGTG-----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 89
Motif name: ccCCmCACCcc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0148347

Alignment:
HBCCMCACCHH
-----CACCTD

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Dataset #: 4
Motif ID: 93
Motif name: rrAGGGGGArr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0194512

Alignment:
VVAGGGGGAVV
-HAGGTG----

Original motif     Consensus sequence: VVAGGGGGAVV Reverse complement motif     Consensus sequence: VVTCCCCCTVV

Dataset #: 3
Motif ID: 47
Motif name: Esrrb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0207244

Alignment:
CACGTG
HAGGTG

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG

Dataset #: 3
Motif ID: 41
Motif name: Arnt
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0207244

Alignment:
CACGTG
CACCTD

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG

Dataset #: 3
Motif ID: 59
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0232753

Alignment:
GTTGACCTTTGACCTTT
----------CACCTD-

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 49
Motif name: HIF1AARNT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0237889

Alignment:
VBACGTGV
-HAGGTG-

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV

Dataset #: 3
Motif ID: 51
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0262123

Alignment:
TGYCAGGGGGCR
---HAGGTG---

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0264837

Alignment:
TGRCCTKTGHCCKAB
-CACCTD--------

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3 Motif ID: 31 Motif name: TFAP2A

Original motif     Consensus sequence: GCCBBVRGS Reverse complement motif     Consensus sequence: SCMVBBGGC

Best Matches for Motif ID 31 (Highest to Lowest)

Dataset #: 3
Motif ID: 28
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 9
Similarity score: 0.0355616

Alignment:
BBVGCCBVGGCCTV
---SCMVBBGGC--

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 9
Similarity score: 0.0612124

Alignment:
BBCGCCCSGCVV
---GCCBBVRGS

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 3
Motif ID: 37
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 9
Similarity score: 0.0638957

Alignment:
GGGGCCCAAGGGGG
---GCCBBVRGS--

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC

Dataset #: 3
Motif ID: 29
Motif name: Zfp423
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 9
Similarity score: 0.0662526

Alignment:
GYRYCCMTKGGYRSC
---SCMVBBGGC---

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 9
Similarity score: 0.067504

Alignment:
MGGTCAGGGTGACCTRDBHV
----------GCCBBVRGS-

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 9
Similarity score: 0.0711479

Alignment:
BBCRCCYCCGBB
---GCCBBVRGS

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4
Motif ID: 78
Motif name: sssCGssGCsss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 9
Similarity score: 0.0729061

Alignment:
SSSCGSSGCSSS
SCMVBBGGC---

Original motif     Consensus sequence: SSSCGSSGCSSS Reverse complement motif     Consensus sequence: SSSGCSSCGSSS

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 9
Similarity score: 0.0756036

Alignment:
BAGGYCABHBTGACCKHV
-----SCMVBBGGC----

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 56
Motif name: Mycn
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 0.0775172

Alignment:
HSCACGTGGC
-SCMVBBGGC

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 9
Similarity score: 0.0805623

Alignment:
MSGKKRCGCWDCABTGBBCD
-------GCCBBVRGS----

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3 Motif ID: 32 Motif name: SP1

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG

Best Matches for Motif ID 32 (Highest to Lowest)

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.030551

Alignment:
SSGGGCGGSGGCGSS
GGGGGYGGGG-----

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.061235

Alignment:
BBCGGKGGMGBB
GGGGGYGGGG--

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4
Motif ID: 89
Motif name: ccCCmCACCcc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0624534

Alignment:
DDGGTGRGGBD
GGGGGYGGGG-

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0646465

Alignment:
BGRRRGRGGRTGRTTYGGGG
-GGGGGYGGGG---------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 3
Motif ID: 28
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0664832

Alignment:
BBVGCCBVGGCCTV
----GGGGGYGGGG

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Dataset #: 3
Motif ID: 37
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0725

Alignment:
CCCCCTTGGGCCCC
-CCCCKCCCCC---

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0731995

Alignment:
TGRCCTKTGHCCKAB
--CCCCKCCCCC---

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 52
Motif name: Klf4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0761191

Alignment:
GCCYCMCCCD
CCCCKCCCCC

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0766895

Alignment:
VVGCSGGGCGBB
GGGGGYGGGG--

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 4
Motif ID: 93
Motif name: rrAGGGGGArr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0787709

Alignment:
VVTCCCCCTVV
-CCCCKCCCCC

Original motif     Consensus sequence: VVAGGGGGAVV Reverse complement motif     Consensus sequence: VVTCCCCCTVV

Dataset #: 3 Motif ID: 33 Motif name: RXRAVDR

Original motif     Consensus sequence: GGGTCAWBGRGTTCA Reverse complement motif     Consensus sequence: TGAACKCBWTGACCC

Best Matches for Motif ID 33 (Highest to Lowest)

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 15
Similarity score: 0.0566667

Alignment:
HWDAGHACRHHVTGTHCCHVMV
---TGAACKCBWTGACCC----

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 15
Similarity score: 0.0617507

Alignment:
VHRGGTCABDBTGMCCTB
--GGGTCAWBGRGTTCA-

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 63
Motif name: RXRRAR_DR5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.062029

Alignment:
RGKTCABVVRGAGGTCA
GGGTCAWBGRGTTCA--

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0714525

Alignment:
VDBHMAGGTCACCCTGACCY
-----TGAACKCBWTGACCC

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 29
Motif name: Zfp423
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0849495

Alignment:
GSMMCCYARGGKKKC
TGAACKCBWTGACCC

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC

Dataset #: 3
Motif ID: 59
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 15
Similarity score: 0.0866667

Alignment:
AAAGGTCAAAGGTCAAC
--GGGTCAWBGRGTTCA

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 37
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 1.06201

Alignment:
GGGGCCCAAGGGGG--
-GGGTCAWBGRGTTCA

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 1.07837

Alignment:
BTRGGDCARAGGKCA--
--GGGTCAWBGRGTTCA

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 50
Motif name: HNF4A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 1.0801

Alignment:
RGGBCAAAGKYCA--
GGGTCAWBGRGTTCA

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3
Motif ID: 38
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 1.08482

Alignment:
AKGYYCAAAGRTCA--
-GGGTCAWBGRGTTCA

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3 Motif ID: 34 Motif name: RREB1

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Best Matches for Motif ID 34 (Highest to Lowest)

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 19
Similarity score: 0.0874679

Alignment:
-MGGTCAGGGTGACCTRDBHV
BGRRRGRGGRTGRTTYGGGG-

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 19
Similarity score: 0.0927532

Alignment:
-HWDAGHACRHHVTGTHCCHVMV
CCCCMAAMCAMCCMCMMMCV---

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.593122

Alignment:
BAGGYCABHBTGACCKHV--
BGRRRGRGGRTGRTTYGGGG

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 17
Similarity score: 1.09431

Alignment:
---DGVBCABTGDWGCGKRRCSR
BGRRRGRGGRTGRTTYGGGG---

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 2.08176

Alignment:
SSCGCCSCCGCCCSS-----
CCCCMAAMCAMCCMCMMMCV

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 3
Motif ID: 37
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 2.5804

Alignment:
CCCCCTTGGGCCCC------
CCCCMAAMCAMCCMCMMMCV

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC

Dataset #: 2
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 2.58596

Alignment:
------CACACAVRCACACA
CCCCMAAMCAMCCMCMMMCV

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 2.5873

Alignment:
------HACAYAYACATRHD
CCCCMAAMCAMCCMCMMMCV

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 2.59077

Alignment:
------CAYACACACACACA
CCCCMAAMCAMCCMCMMMCV

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 3
Motif ID: 63
Motif name: RXRRAR_DR5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 13
Similarity score: 3.07964

Alignment:
RGKTCABVVRGAGGTCA-------
----BGRRRGRGGRTGRTTYGGGG

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK

Dataset #: 3 Motif ID: 35 Motif name: REST

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Best Matches for Motif ID 35 (Highest to Lowest)

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 21
Similarity score: 0.0685835

Alignment:
VRVDGGHACAVDDKGTHCTDWH
-GGYGCTGTCCATGGTGCTGAA

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 1.577

Alignment:
MSGKKRCGCWDCABTGBBCD---
--GGYGCTGTCCATGGTGCTGAA

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 16
Similarity score: 2.56863

Alignment:
-----VDBHMAGGTCACCCTGACCY
TTCAGCACCATGGACAGCKCC----

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 13
Similarity score: 4.05754

Alignment:
BAGGYCABHBTGACCKHV--------
-----GGYGCTGTCCATGGTGCTGAA

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 50
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 4.06973

Alignment:
TGMYCTTTGBCCK--------
GGYGCTGTCCATGGTGCTGAA

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 4.07172

Alignment:
--------BTRGGDCARAGGKCA
TTCAGCACCATGGACAGCKCC--

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 4.56521

Alignment:
SSCGCCSCCGCCCSS---------
---GGYGCTGTCCATGGTGCTGAA

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 4
Motif ID: 77
Motif name: ssGCTswGCCms
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 4.56618

Alignment:
---------VBGCTSAGCCHB
TTCAGCACCATGGACAGCKCC

Original motif     Consensus sequence: VBGCTSAGCCHB Reverse complement motif     Consensus sequence: BDGGCTSAGCBV

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 4.57063

Alignment:
BBCRCCYCCGBB---------
GGYGCTGTCCATGGTGCTGAA

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 3
Motif ID: 64
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 4.57098

Alignment:
CCAGYYHVADCCRG---------
--GGYGCTGTCCATGGTGCTGAA

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Dataset #: 3 Motif ID: 36 Motif name: PPARGRXRA

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Best Matches for Motif ID 36 (Highest to Lowest)

Dataset #: 3
Motif ID: 59
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.0442974

Alignment:
AAAGGTCAAAGGTCAAC
BTRGGDCARAGGKCA--

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 63
Motif name: RXRRAR_DR5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0500583

Alignment:
RGKTCABVVRGAGGTCA
--BTRGGDCARAGGKCA

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 15
Similarity score: 0.0602408

Alignment:
VHRGGTCABDBTGMCCTB
BTRGGDCARAGGKCA---

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 15
Similarity score: 0.0714981

Alignment:
HWDAGHACRHHVTGTHCCHVMV
-------TGRCCTKTGHCCKAB

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 15
Similarity score: 0.0720255

Alignment:
MSGKKRCGCWDCABTGBBCD
---TGRCCTKTGHCCKAB--

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.0723092

Alignment:
VDBHMAGGTCACCCTGACCY
---BTRGGDCARAGGKCA--

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0755648

Alignment:
CCCCMAAMCAMCCMCMMMCV
-TGRCCTKTGHCCKAB----

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0796159

Alignment:
TTCAGCACCATGGACAGCKCC
-BTRGGDCARAGGKCA-----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 38
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.536521

Alignment:
TGAMCTTTGMMCYT-
TGRCCTKTGHCCKAB

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 37
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.575248

Alignment:
-GGGGCCCAAGGGGG
BTRGGDCARAGGKCA

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC

Dataset #: 3 Motif ID: 37 Motif name: PLAG1

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC

Best Matches for Motif ID 37 (Highest to Lowest)

Dataset #: 3
Motif ID: 29
Motif name: Zfp423
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0944264

Alignment:
GSMMCCYARGGKKKC
GGGGCCCAAGGGGG-

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 14
Similarity score: 0.102814

Alignment:
BGRRRGRGGRTGRTTYGGGG
GGGGCCCAAGGGGG------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.107124

Alignment:
SSCGCCSCCGCCCSS
-CCCCCTTGGGCCCC

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.107206

Alignment:
BTRGGDCARAGGKCA
-GGGGCCCAAGGGGG

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 28
Motif name: Zfx
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.111315

Alignment:
VAGGCCBBGGCVBB
GGGGCCCAAGGGGG

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Dataset #: 3
Motif ID: 64
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.115151

Alignment:
CCAGYYHVADCCRG
CCCCCTTGGGCCCC

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Dataset #: 3
Motif ID: 63
Motif name: RXRRAR_DR5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.116287

Alignment:
RGKTCABVVRGAGGTCA
GGGGCCCAAGGGGG---

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.117063

Alignment:
DGVBCABTGDWGCGKRRCSR
GGGGCCCAAGGGGG------

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 33
Motif name: RXRAVDR
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.590064

Alignment:
-GGGTCAWBGRGTTCA
GGGGCCCAAGGGGG--

Original motif     Consensus sequence: GGGTCAWBGRGTTCA Reverse complement motif     Consensus sequence: TGAACKCBWTGACCC

Dataset #: 3
Motif ID: 50
Motif name: HNF4A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.603385

Alignment:
-RGGBCAAAGKYCA
GGGGCCCAAGGGGG

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3 Motif ID: 38 Motif name: NR2F1

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Best Matches for Motif ID 38 (Highest to Lowest)

Dataset #: 3
Motif ID: 59
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0174588

Alignment:
GTTGACCTTTGACCTTT
--TGAMCTTTGMMCYT-

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0278283

Alignment:
BTRGGDCARAGGKCA
AKGYYCAAAGRTCA-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 63
Motif name: RXRRAR_DR5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0625328

Alignment:
RGKTCABVVRGAGGTCA
---AKGYYCAAAGRTCA

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 14
Similarity score: 0.0706629

Alignment:
HDAMACACAKKTKTKTHD
AKGYYCAAAGRTCA----

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0710475

Alignment:
BAGGYCABHBTGACCKHV
---TGAMCTTTGMMCYT-

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 14
Similarity score: 0.071796

Alignment:
GGYGCTGTCCATGGTGCTGAA
--TGAMCTTTGMMCYT-----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 14
Similarity score: 0.0741987

Alignment:
MSGKKRCGCWDCABTGBBCD
----TGAMCTTTGMMCYT--

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 50
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.514048

Alignment:
-RGGBCAAAGKYCA
AKGYYCAAAGRTCA

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3
Motif ID: 28
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.568042

Alignment:
BBVGCCBVGGCCTV-
-AKGYYCAAAGRTCA

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 13
Similarity score: 0.569869

Alignment:
VDBHMAGGTCACCCTGACCY-
-------TGAMCTTTGMMCYT

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3 Motif ID: 39 Motif name: MZF1_1-4

Original motif     Consensus sequence: BGGGGA Reverse complement motif     Consensus sequence: TCCCCV

Best Matches for Motif ID 39 (Highest to Lowest)

Dataset #: 4
Motif ID: 93
Motif name: rrAGGGGGArr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0136552

Alignment:
VVTCCCCCTVV
--TCCCCV---

Original motif     Consensus sequence: VVAGGGGGAVV Reverse complement motif     Consensus sequence: VVTCCCCCTVV

Dataset #: 3
Motif ID: 51
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0276389

Alignment:
MGCCCCCTGMCA
--TCCCCV----

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA

Dataset #: 3
Motif ID: 57
Motif name: MZF1_5-13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0314583

Alignment:
BKAGGGGDAD
---BGGGGA-

Original motif     Consensus sequence: BKAGGGGDAD Reverse complement motif     Consensus sequence: BTHCCCCTYB

Dataset #: 4
Motif ID: 89
Motif name: ccCCmCACCcc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.03801

Alignment:
HBCCMCACCHH
-TCCCCV----

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Dataset #: 3
Motif ID: 52
Motif name: Klf4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0406514

Alignment:
GCCYCMCCCD
TCCCCV----

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD

Dataset #: 3
Motif ID: 37
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.0412963

Alignment:
GGGGCCCAAGGGGG
--------BGGGGA

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC

Dataset #: 2
Motif ID: 24
Motif name: Motif 24
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0426517

Alignment:
TCCCAG
TCCCCV

Original motif     Consensus sequence: CTGGGA Reverse complement motif     Consensus sequence: TCCCAG

Dataset #: 3
Motif ID: 32
Motif name: SP1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0464881

Alignment:
GGGGGYGGGG
----BGGGGA

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.047793

Alignment:
SSCGCCSCCGCCCSS
---------TCCCCV

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0493561

Alignment:
CCCCMAAMCAMCCMCMMMCV
----TCCCCV----------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 3 Motif ID: 40 Motif name: Ar

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Best Matches for Motif ID 40 (Highest to Lowest)

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 21
Similarity score: 0.0696331

Alignment:
-GGYGCTGTCCATGGTGCTGAA
VRVDGGHACAVDDKGTHCTDWH

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 20
Similarity score: 0.564914

Alignment:
--MSGKKRCGCWDCABTGBBCD
VRVDGGHACAVDDKGTHCTDWH

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 19
Similarity score: 1.05195

Alignment:
VDBHMAGGTCACCCTGACCY---
-VRVDGGHACAVDDKGTHCTDWH

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 19
Similarity score: 1.07661

Alignment:
CCCCMAAMCAMCCMCMMMCV---
-HWDAGHACRHHVTGTHCCHVMV

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 1.57551

Alignment:
----HDAMACACAKKTKTKTHD
VRVDGGHACAVDDKGTHCTDWH

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 3.0649

Alignment:
-------BTRGGDCARAGGKCA
VRVDGGHACAVDDKGTHCTDWH

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 3.56216

Alignment:
HACAYAYACATRHD--------
VRVDGGHACAVDDKGTHCTDWH

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 14
Similarity score: 3.57597

Alignment:
--------VHRGGTCABDBTGMCCTB
VRVDGGHACAVDDKGTHCTDWH----

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 4.06081

Alignment:
---------BBCWGGCCAGCBB
HWDAGHACRHHVTGTHCCHVMV

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 3
Motif ID: 50
Motif name: HNF4A
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 4.07506

Alignment:
---------TGMYCTTTGBCCK
HWDAGHACRHHVTGTHCCHVMV

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3 Motif ID: 41 Motif name: Arnt

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG

Best Matches for Motif ID 41 (Highest to Lowest)

Dataset #: 3
Motif ID: 47
Motif name: Esrrb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0

Alignment:
CACGTG
CACGTG

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG

Dataset #: 3
Motif ID: 55
Motif name: MYCMAX
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0143849

Alignment:
RASCACGTGGT
---CACGTG--

Original motif     Consensus sequence: RASCACGTGGT Reverse complement motif     Consensus sequence: ACCACGTGSTM

Dataset #: 3
Motif ID: 54
Motif name: Myc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0267529

Alignment:
VGCACGTGGH
--CACGTG--

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV

Dataset #: 3
Motif ID: 56
Motif name: Mycn
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0272641

Alignment:
HSCACGTGGC
--CACGTG--

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD

Dataset #: 3
Motif ID: 49
Motif name: HIF1AARNT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0347756

Alignment:
VCACGTBV
-CACGTG-

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV

Dataset #: 3
Motif ID: 42
Motif name: ArntAhr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.065625

Alignment:
YGCGTG
CACGTG

Original motif     Consensus sequence: YGCGTG Reverse complement motif     Consensus sequence: CACGCM

Dataset #: 3
Motif ID: 30
Motif name: ZEB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0689533

Alignment:
HAGGTG
CACGTG

Original motif     Consensus sequence: CACCTD Reverse complement motif     Consensus sequence: HAGGTG

Dataset #: 3
Motif ID: 44
Motif name: Egr1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0784722

Alignment:
HGCGTGGGCGK
CACGTG-----

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0849165

Alignment:
DHAYAYAYRTGTGTRTDH
-----CACGTG-------

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 3
Motif ID: 53
Motif name: MIZF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0854167

Alignment:
BAACGTCCGC
-CACGTG---

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV

Dataset #: 3 Motif ID: 42 Motif name: ArntAhr

Original motif     Consensus sequence: YGCGTG Reverse complement motif     Consensus sequence: CACGCM

Best Matches for Motif ID 42 (Highest to Lowest)

Dataset #: 3
Motif ID: 44
Motif name: Egr1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.00801749

Alignment:
HGCGTGGGCGK
YGCGTG-----

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH

Dataset #: 3
Motif ID: 49
Motif name: HIF1AARNT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0192621

Alignment:
VBACGTGV
-YGCGTG-

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0388571

Alignment:
TGTGTGTGTGTKTG
------YGCGTG--

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 3
Motif ID: 47
Motif name: Esrrb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0396147

Alignment:
CACGTG
YGCGTG

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG

Dataset #: 3
Motif ID: 41
Motif name: Arnt
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0396147

Alignment:
CACGTG
YGCGTG

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0420782

Alignment:
TGTGTGTGTGTG
YGCGTG------

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 2
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.0430749

Alignment:
CACACAVRCACACA
--------CACGCM

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.043218

Alignment:
HVCATGCATGCABD
--CACGCM------

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0440329

Alignment:
TGTGTGTGTGTG
----YGCGTG--

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 3
Motif ID: 55
Motif name: MYCMAX
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0456663

Alignment:
RASCACGTGGT
---YGCGTG--

Original motif     Consensus sequence: RASCACGTGGT Reverse complement motif     Consensus sequence: ACCACGTGSTM

Dataset #: 3 Motif ID: 43 Motif name: E2F1

Original motif     Consensus sequence: TTTSGCGC Reverse complement motif     Consensus sequence: GCGCSAAA

Best Matches for Motif ID 43 (Highest to Lowest)

Dataset #: 3
Motif ID: 37
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0610174

Alignment:
CCCCCTTGGGCCCC
-TTTSGCGC-----

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0634966

Alignment:
TGRCCTKTGHCCKAB
--TTTSGCGC-----

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 50
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0638262

Alignment:
RGGBCAAAGKYCA
GCGCSAAA-----

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3
Motif ID: 59
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0652535

Alignment:
AAAGGTCAAAGGTCAAC
--GCGCSAAA-------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 38
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0723689

Alignment:
TGAMCTTTGMMCYT
-----TTTSGCGC-

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 29
Motif name: Zfp423
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0778103

Alignment:
GSMMCCYARGGKKKC
------GCGCSAAA-

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0785178

Alignment:
BBTCTKTKTCHB
----TTTSGCGC

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 78
Motif name: sssCGssGCsss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.078631

Alignment:
SSSGCSSCGSSS
--TTTSGCGC--

Original motif     Consensus sequence: SSSCGSSGCSSS Reverse complement motif     Consensus sequence: SSSGCSSCGSSS

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0796616

Alignment:
BBCGCCCSGCVV
-GCGCSAAA---

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0816948

Alignment:
AAACAAAACAA
GCGCSAAA---

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 3 Motif ID: 44 Motif name: Egr1

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH

Best Matches for Motif ID 44 (Highest to Lowest)

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0247041

Alignment:
BBCGGKGGMGBB
HGCGTGGGCGK-

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0409098

Alignment:
SSCGCCSCCGCCCSS
-YCGCCCACGCH---

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0550907

Alignment:
BGRRRGRGGRTGRTTYGGGG
-------HGCGTGGGCGK--

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0597938

Alignment:
TGTGTGTGTGTG
HGCGTGGGCGK-

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0606494

Alignment:
TGTGTGTGTGTG
HGCGTGGGCGK-

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.062391

Alignment:
CAYACACACACACA
YCGCCCACGCH---

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 4
Motif ID: 89
Motif name: ccCCmCACCcc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0639546

Alignment:
HBCCMCACCHH
YCGCCCACGCH

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0665456

Alignment:
VVGCSGGGCGBB
HGCGTGGGCGK-

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 2
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0668604

Alignment:
CACACAVRCACACA
YCGCCCACGCH---

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Dataset #: 3
Motif ID: 29
Motif name: Zfp423
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0673496

Alignment:
GSMMCCYARGGKKKC
---YCGCCCACGCH-

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC

Dataset #: 3 Motif ID: 45 Motif name: ESR1

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Best Matches for Motif ID 45 (Highest to Lowest)

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 20
Similarity score: 0.0624908

Alignment:
MSGKKRCGCWDCABTGBBCD
MGGTCAGGGTGACCTRDBHV

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 19
Similarity score: 0.556363

Alignment:
-HWDAGHACRHHVTGTHCCHVMV
MGGTCAGGGTGACCTRDBHV---

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 19
Similarity score: 0.575732

Alignment:
BGRRRGRGGRTGRTTYGGGG-
-MGGTCAGGGTGACCTRDBHV

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 17
Similarity score: 1.50287

Alignment:
---VHRGGTCABDBTGMCCTB
VDBHMAGGTCACCCTGACCY-

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 63
Motif name: RXRRAR_DR5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 1.55839

Alignment:
---TGACCTCKVVBTGAYCK
VDBHMAGGTCACCCTGACCY

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 16
Similarity score: 2.07409

Alignment:
TTCAGCACCATGGACAGCKCC----
-----VDBHMAGGTCACCCTGACCY

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 33
Motif name: RXRAVDR
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 2.56536

Alignment:
-----GGGTCAWBGRGTTCA
MGGTCAGGGTGACCTRDBHV

Original motif     Consensus sequence: GGGTCAWBGRGTTCA Reverse complement motif     Consensus sequence: TGAACKCBWTGACCC

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 3.07055

Alignment:
------TGRCCTKTGHCCKAB
VDBHMAGGTCACCCTGACCY-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 3.07869

Alignment:
SSGGGCGGSGGCGSS------
-VDBHMAGGTCACCCTGACCY

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 3.08388

Alignment:
------HVCATGCATGCABD
MGGTCAGGGTGACCTRDBHV

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 3 Motif ID: 46 Motif name: ESR2

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Best Matches for Motif ID 46 (Highest to Lowest)

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0488603

Alignment:
HWDAGHACRHHVTGTHCCHVMV
--BAGGYCABHBTGACCKHV--

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0851144

Alignment:
MSGKKRCGCWDCABTGBBCD
BAGGYCABHBTGACCKHV--

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0903249

Alignment:
BGRRRGRGGRTGRTTYGGGG
BAGGYCABHBTGACCKHV--

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0916961

Alignment:
GGYGCTGTCCATGGTGCTGAA
-VHRGGTCABDBTGMCCTB--

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 17
Similarity score: 0.511812

Alignment:
VDBHMAGGTCACCCTGACCY-
---VHRGGTCABDBTGMCCTB

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 63
Motif name: RXRRAR_DR5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.570972

Alignment:
-RGKTCABVVRGAGGTCA
BAGGYCABHBTGACCKHV

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 1.56699

Alignment:
BTRGGDCARAGGKCA---
VHRGGTCABDBTGMCCTB

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 1.58524

Alignment:
SSGGGCGGSGGCGSS---
VHRGGTCABDBTGMCCTB

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 3
Motif ID: 28
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 2.07891

Alignment:
VAGGCCBBGGCVBB----
BAGGYCABHBTGACCKHV

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Dataset #: 3
Motif ID: 38
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 2.08921

Alignment:
----TGAMCTTTGMMCYT
VHRGGTCABDBTGMCCTB

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3 Motif ID: 47 Motif name: Esrrb

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG

Best Matches for Motif ID 47 (Highest to Lowest)

Dataset #: 3
Motif ID: 41
Motif name: Arnt
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0

Alignment:
CACGTG
CACGTG

Original motif     Consensus sequence: CACGTG Reverse complement motif     Consensus sequence: CACGTG

Dataset #: 3
Motif ID: 55
Motif name: MYCMAX
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.0143849

Alignment:
RASCACGTGGT
---CACGTG--

Original motif     Consensus sequence: RASCACGTGGT Reverse complement motif     Consensus sequence: ACCACGTGSTM

Dataset #: 3
Motif ID: 54
Motif name: Myc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0267529

Alignment:
DCCACGTGCV
--CACGTG--

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV

Dataset #: 3
Motif ID: 56
Motif name: Mycn
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0272641

Alignment:
GCCACGTGSD
--CACGTG--

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD

Dataset #: 3
Motif ID: 49
Motif name: HIF1AARNT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0347756

Alignment:
VCACGTBV
-CACGTG-

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV

Dataset #: 3
Motif ID: 42
Motif name: ArntAhr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.065625

Alignment:
YGCGTG
CACGTG

Original motif     Consensus sequence: YGCGTG Reverse complement motif     Consensus sequence: CACGCM

Dataset #: 3
Motif ID: 30
Motif name: ZEB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0689533

Alignment:
HAGGTG
CACGTG

Original motif     Consensus sequence: CACCTD Reverse complement motif     Consensus sequence: HAGGTG

Dataset #: 3
Motif ID: 44
Motif name: Egr1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0784722

Alignment:
HGCGTGGGCGK
CACGTG-----

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0849165

Alignment:
DHAYAYAYRTGTGTRTDH
-----CACGTG-------

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 3
Motif ID: 53
Motif name: MIZF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0854167

Alignment:
BAACGTCCGC
-CACGTG---

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV

Dataset #: 3 Motif ID: 48 Motif name: EWSR1-FLI1

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC

Best Matches for Motif ID 48 (Highest to Lowest)

Dataset #: 3
Motif ID: 59
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 12
Similarity score: 1.09472

Alignment:
------AAAGGTCAAAGGTCAAC
GGAAGGAAGGAAGGAAGG-----

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 1.1007

Alignment:
------TKKTTTGTTTTTTT
CCTTCCTTCCTTCCTTCC--

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 10
Similarity score: 2.09833

Alignment:
--------CCCCMAAMCAMCCMCMMMCV
CCTTCCTTCCTTCCTTCC----------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 3
Motif ID: 32
Motif name: SP1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 2.58264

Alignment:
GGGGGYGGGG---------
-GGAAGGAAGGAAGGAAGG

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG

Dataset #: 4
Motif ID: 93
Motif name: rrAGGGGGArr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 9
Similarity score: 2.59702

Alignment:
---------VVAGGGGGAVV
GGAAGGAAGGAAGGAAGG--

Original motif     Consensus sequence: VVAGGGGGAVV Reverse complement motif     Consensus sequence: VVTCCCCCTVV

Dataset #: 1
Motif ID: 13
Motif name: Motif 13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 3.07051

Alignment:
----------GAGRCAGR
GGAAGGAAGGAAGGAAGG

Original motif     Consensus sequence: GAGRCAGR Reverse complement motif     Consensus sequence: MCTGKCTC

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 3.07749

Alignment:
CYBCCTCC----------
CCTTCCTTCCTTCCTTCC

Original motif     Consensus sequence: CYBCCTCC Reverse complement motif     Consensus sequence: GGAGGVMG

Dataset #: 4
Motif ID: 68
Motif name: dwCTTTTCwy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 3.08665

Alignment:
DHCTTTTCHH----------
--CCTTCCTTCCTTCCTTCC

Original motif     Consensus sequence: DHCTTTTCHH Reverse complement motif     Consensus sequence: DHGAAAAGHD

Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 3.0889

Alignment:
ASASAGAA----------
GGAAGGAAGGAAGGAAGG

Original motif     Consensus sequence: ASASAGAA Reverse complement motif     Consensus sequence: TTCTSTST

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 3.08948

Alignment:
GCTGGGAW----------
GGAAGGAAGGAAGGAAGG

Original motif     Consensus sequence: GCTGGGAW Reverse complement motif     Consensus sequence: WTCCCAGC

Dataset #: 3 Motif ID: 49 Motif name: HIF1AARNT

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV

Best Matches for Motif ID 49 (Highest to Lowest)

Dataset #: 3
Motif ID: 56
Motif name: Mycn
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0228069

Alignment:
GCCACGTGSD
-VBACGTGV-

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD

Dataset #: 3
Motif ID: 54
Motif name: Myc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0249459

Alignment:
DCCACGTGCV
-VBACGTGV-

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV

Dataset #: 3
Motif ID: 55
Motif name: MYCMAX
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0254922

Alignment:
RASCACGTGGT
--VBACGTGV-

Original motif     Consensus sequence: RASCACGTGGT Reverse complement motif     Consensus sequence: ACCACGTGSTM

Dataset #: 3
Motif ID: 53
Motif name: MIZF
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0482171

Alignment:
GCGGACGTTV
--VCACGTBV

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 8
Similarity score: 0.0533654

Alignment:
VRVDGGHACAVDDKGTHCTDWH
----VBACGTGV----------

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0615181

Alignment:
HACAYAYACATRHD
-----VBACGTGV-

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 4
Motif ID: 103
Motif name: ccCCAGTGCAbr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0642624

Alignment:
DBTGCACTGGVD
---VCACGTBV-

Original motif     Consensus sequence: HVCCAGTGCABD Reverse complement motif     Consensus sequence: DBTGCACTGGVD

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.0661859

Alignment:
MSGKKRCGCWDCABTGBBCD
-----VCACGTBV-------

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0666776

Alignment:
CCCCMAAMCAMCCMCMMMCV
-----VCACGTBV-------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0666933

Alignment:
DVTGCATGCATGBH
-VBACGTGV-----

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 3 Motif ID: 50 Motif name: HNF4A

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Best Matches for Motif ID 50 (Highest to Lowest)

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0

Alignment:
TGRCCTKTGHCCKAB
TGMYCTTTGBCCK--

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 38
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0227413

Alignment:
TGAMCTTTGMMCYT
-TGMYCTTTGBCCK

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 59
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0423023

Alignment:
AAAGGTCAAAGGTCAAC
--RGGBCAAAGKYCA--

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 63
Motif name: RXRRAR_DR5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.048852

Alignment:
TGACCTCKVVBTGAYCK
TGMYCTTTGBCCK----

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 13
Similarity score: 0.063924

Alignment:
MSGKKRCGCWDCABTGBBCD
-------RGGBCAAAGKYCA

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0671615

Alignment:
VHRGGTCABDBTGMCCTB
--RGGBCAAAGKYCA---

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 13
Similarity score: 0.067775

Alignment:
VRVDGGHACAVDDKGTHCTDWH
------TGMYCTTTGBCCK---

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0711137

Alignment:
VDBHMAGGTCACCCTGACCY
TGMYCTTTGBCCK-------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 37
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0714266

Alignment:
GGGGCCCAAGGGGG
-RGGBCAAAGKYCA

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0734915

Alignment:
DHKATGTKTKTGTD
-TGMYCTTTGBCCK

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 3 Motif ID: 51 Motif name: INSM1

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA

Best Matches for Motif ID 51 (Highest to Lowest)

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0472454

Alignment:
BTRGGDCARAGGKCA
---TGYCAGGGGGCR

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0477144

Alignment:
SSCGCCSCCGCCCSS
--MGCCCCCTGMCA-

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0499162

Alignment:
BGRRRGRGGRTGRTTYGGGG
--------TGYCAGGGGGCR

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 3
Motif ID: 29
Motif name: Zfp423
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0538619

Alignment:
GYRYCCMTKGGYRSC
-MGCCCCCTGMCA--

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC

Dataset #: 3
Motif ID: 50
Motif name: HNF4A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0551858

Alignment:
RGGBCAAAGKYCA
-TGYCAGGGGGCR

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0598772

Alignment:
BBCGCCCSGCVV
MGCCCCCTGMCA

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 12
Similarity score: 0.0630846

Alignment:
VDBHMAGGTCACCCTGACCY
-TGYCAGGGGGCR-------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0673571

Alignment:
TGTGTGTGTGTG
TGYCAGGGGGCR

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 12
Similarity score: 0.0679087

Alignment:
DGVBCABTGDWGCGKRRCSR
-----TGYCAGGGGGCR---

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 28
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.069037

Alignment:
VAGGCCBBGGCVBB
-MGCCCCCTGMCA-

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Dataset #: 3 Motif ID: 52 Motif name: Klf4

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD

Best Matches for Motif ID 52 (Highest to Lowest)

Dataset #: 4
Motif ID: 89
Motif name: ccCCmCACCcc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0387664

Alignment:
DDGGTGRGGBD
DGGGYGKGGC-

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0433615

Alignment:
SSGGGCGGSGGCGSS
-DGGGYGKGGC----

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.065355

Alignment:
BGRRRGRGGRTGRTTYGGGG
----------DGGGYGKGGC

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 3
Motif ID: 28
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0734166

Alignment:
BBVGCCBVGGCCTV
-GCCYCMCCCD---

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0748311

Alignment:
BBCRCCYCCGBB
GCCYCMCCCD--

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 3
Motif ID: 32
Motif name: SP1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0773711

Alignment:
GGGGGYGGGG
DGGGYGKGGC

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0781179

Alignment:
CAYACACACACACA
--GCCYCMCCCD--

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 3
Motif ID: 51
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0785684

Alignment:
MGCCCCCTGMCA
--GCCYCMCCCD

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA

Dataset #: 3
Motif ID: 54
Motif name: Myc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0797423

Alignment:
VGCACGTGGH
DGGGYGKGGC

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV

Dataset #: 4
Motif ID: 77
Motif name: ssGCTswGCCms
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0798763

Alignment:
VBGCTSAGCCHB
-GCCYCMCCCD-

Original motif     Consensus sequence: VBGCTSAGCCHB Reverse complement motif     Consensus sequence: BDGGCTSAGCBV

Dataset #: 3 Motif ID: 53 Motif name: MIZF

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV

Best Matches for Motif ID 53 (Highest to Lowest)

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0697975

Alignment:
BBCRCCYCCGBB
-BAACGTCCGC-

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 3
Motif ID: 55
Motif name: MYCMAX
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0699702

Alignment:
ACCACGTGSTM
-BAACGTCCGC

Original motif     Consensus sequence: RASCACGTGGT Reverse complement motif     Consensus sequence: ACCACGTGSTM

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0708456

Alignment:
BAGGYCABHBTGACCKHV
--------GCGGACGTTV

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 10
Similarity score: 0.0717246

Alignment:
VDBHMAGGTCACCCTGACCY
---BAACGTCCGC-------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4
Motif ID: 82
Motif name: rmACAGCAGsr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0718896

Alignment:
DVCTGCTGTVB
-GCGGACGTTV

Original motif     Consensus sequence: VVACAGCAGVD Reverse complement motif     Consensus sequence: DVCTGCTGTVB

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0741667

Alignment:
HWDAGHACRHHVTGTHCCHVMV
---------BAACGTCCGC---

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 3
Motif ID: 59
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.074875

Alignment:
AAAGGTCAAAGGTCAAC
-------BAACGTCCGC

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0810827

Alignment:
GGYGCTGTCCATGGTGCTGAA
---------BAACGTCCGC--

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 87
Motif name: ssCGGsYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0815371

Alignment:
BSCGGSCCGSV
BAACGTCCGC-

Original motif     Consensus sequence: BSCGGSCCGSV Reverse complement motif     Consensus sequence: VSCGGSCCGSB

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0878113

Alignment:
BBCWGGCCAGCBB
-BAACGTCCGC--

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 3 Motif ID: 54 Motif name: Myc

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV

Best Matches for Motif ID 54 (Highest to Lowest)

Dataset #: 3
Motif ID: 56
Motif name: Mycn
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0

Alignment:
HSCACGTGGC
VGCACGTGGH

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD

Dataset #: 3
Motif ID: 55
Motif name: MYCMAX
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0209359

Alignment:
RASCACGTGGT
-VGCACGTGGH

Original motif     Consensus sequence: RASCACGTGGT Reverse complement motif     Consensus sequence: ACCACGTGSTM

Dataset #: 4
Motif ID: 103
Motif name: ccCCAGTGCAbr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0708559

Alignment:
HVCCAGTGCABD
DCCACGTGCV--

Original motif     Consensus sequence: HVCCAGTGCABD Reverse complement motif     Consensus sequence: DBTGCACTGGVD

Dataset #: 4
Motif ID: 66
Motif name: ssCGssCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0820751

Alignment:
BSCGSSCGSV
VGCACGTGGH

Original motif     Consensus sequence: BSCGSSCGSV Reverse complement motif     Consensus sequence: VSCGSSCGSB

Dataset #: 3
Motif ID: 51
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0844808

Alignment:
MGCCCCCTGMCA
-DCCACGTGCV-

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA

Dataset #: 4
Motif ID: 65
Motif name: ssCGrGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0859376

Alignment:
VBCGCMCGSV
VGCACGTGGH

Original motif     Consensus sequence: VSCGRGCGBV Reverse complement motif     Consensus sequence: VBCGCMCGSV

Dataset #: 4
Motif ID: 94
Motif name: ssCGCksCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0876214

Alignment:
VVCGCKSCGBB
VGCACGTGGH-

Original motif     Consensus sequence: VVCGCKSCGBB Reverse complement motif     Consensus sequence: BBCGSRGCGVV

Dataset #: 3
Motif ID: 52
Motif name: Klf4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0883745

Alignment:
DGGGYGKGGC
VGCACGTGGH

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD

Dataset #: 4
Motif ID: 72
Motif name: ssCKCwsCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0918906

Alignment:
VBCGSWGCGVB
-DCCACGTGCV

Original motif     Consensus sequence: BVCGCWSCGBV Reverse complement motif     Consensus sequence: VBCGSWGCGVB

Dataset #: 3
Motif ID: 28
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0925451

Alignment:
VAGGCCBBGGCVBB
---DCCACGTGCV-

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Dataset #: 3 Motif ID: 55 Motif name: MYCMAX

Original motif     Consensus sequence: RASCACGTGGT Reverse complement motif     Consensus sequence: ACCACGTGSTM

Best Matches for Motif ID 55 (Highest to Lowest)

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 11
Similarity score: 0.0862644

Alignment:
CCCCMAAMCAMCCMCMMMCV
---ACCACGTGSTM------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 11
Similarity score: 0.0877525

Alignment:
HWDAGHACRHHVTGTHCCHVMV
--RASCACGTGGT---------

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 4
Motif ID: 103
Motif name: ccCCAGTGCAbr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0902864

Alignment:
HVCCAGTGCABD
ACCACGTGSTM-

Original motif     Consensus sequence: HVCCAGTGCABD Reverse complement motif     Consensus sequence: DBTGCACTGGVD

Dataset #: 3
Motif ID: 29
Motif name: Zfp423
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0933483

Alignment:
GSMMCCYARGGKKKC
-ACCACGTGSTM---

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC

Dataset #: 3
Motif ID: 37
Motif name: PLAG1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.10358

Alignment:
CCCCCTTGGGCCCC
ACCACGTGSTM---

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC

Dataset #: 3
Motif ID: 51
Motif name: INSM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.104527

Alignment:
TGYCAGGGGGCR
RASCACGTGGT-

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.105174

Alignment:
GGYGCTGTCCATGGTGCTGAA
--------ACCACGTGSTM--

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.105681

Alignment:
VHRGGTCABDBTGMCCTB
---RASCACGTGGT----

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.107782

Alignment:
MGGTCAGGGTGACCTRDBHV
--------ACCACGTGSTM-

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 63
Motif name: RXRRAR_DR5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.108615

Alignment:
TGACCTCKVVBTGAYCK
--ACCACGTGSTM----

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK

Dataset #: 3 Motif ID: 56 Motif name: Mycn

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD

Best Matches for Motif ID 56 (Highest to Lowest)

Dataset #: 3
Motif ID: 54
Motif name: Myc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0

Alignment:
VGCACGTGGH
HSCACGTGGC

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV

Dataset #: 3
Motif ID: 55
Motif name: MYCMAX
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0200467

Alignment:
RASCACGTGGT
-HSCACGTGGC

Original motif     Consensus sequence: RASCACGTGGT Reverse complement motif     Consensus sequence: ACCACGTGSTM

Dataset #: 4
Motif ID: 103
Motif name: ccCCAGTGCAbr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0746307

Alignment:
HVCCAGTGCABD
GCCACGTGSD--

Original motif     Consensus sequence: HVCCAGTGCABD Reverse complement motif     Consensus sequence: DBTGCACTGGVD

Dataset #: 4
Motif ID: 66
Motif name: ssCGssCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0794648

Alignment:
BSCGSSCGSV
HSCACGTGGC

Original motif     Consensus sequence: BSCGSSCGSV Reverse complement motif     Consensus sequence: VSCGSSCGSB

Dataset #: 4
Motif ID: 65
Motif name: ssCGrGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0833782

Alignment:
VBCGCMCGSV
HSCACGTGGC

Original motif     Consensus sequence: VSCGRGCGBV Reverse complement motif     Consensus sequence: VBCGCMCGSV

Dataset #: 3
Motif ID: 51
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0834824

Alignment:
MGCCCCCTGMCA
-GCCACGTGSD-

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0872684

Alignment:
BBCGCCCSGCVV
HSCACGTGGC--

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 4
Motif ID: 94
Motif name: ssCGCksCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0886917

Alignment:
VVCGCKSCGBB
HSCACGTGGC-

Original motif     Consensus sequence: VVCGCKSCGBB Reverse complement motif     Consensus sequence: BBCGSRGCGVV

Dataset #: 3
Motif ID: 52
Motif name: Klf4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0893272

Alignment:
DGGGYGKGGC
HSCACGTGGC

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.089863

Alignment:
MGGTCAGGGTGACCTRDBHV
--------GCCACGTGSD--

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3 Motif ID: 57 Motif name: MZF1_5-13

Original motif     Consensus sequence: BKAGGGGDAD Reverse complement motif     Consensus sequence: BTHCCCCTYB

Best Matches for Motif ID 57 (Highest to Lowest)

Dataset #: 4
Motif ID: 93
Motif name: rrAGGGGGArr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0129746

Alignment:
VVAGGGGGAVV
BKAGGGGDAD-

Original motif     Consensus sequence: VVAGGGGGAVV Reverse complement motif     Consensus sequence: VVTCCCCCTVV

Dataset #: 3
Motif ID: 51
Motif name: INSM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0360532

Alignment:
TGYCAGGGGGCR
--BKAGGGGDAD

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0428241

Alignment:
DGVBCABTGDWGCGKRRCSR
-------BKAGGGGDAD---

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0470779

Alignment:
BTRGGDCARAGGKCA
BKAGGGGDAD-----

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 29
Motif name: Zfp423
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0524832

Alignment:
GSMMCCYARGGKKKC
-----BKAGGGGDAD

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0548506

Alignment:
CCCCMAAMCAMCCMCMMMCV
-BTHCCCCTYB---------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 3
Motif ID: 50
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0568244

Alignment:
TGMYCTTTGBCCK
BTHCCCCTYB---

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3
Motif ID: 63
Motif name: RXRRAR_DR5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0581547

Alignment:
TGACCTCKVVBTGAYCK
BTHCCCCTYB-------

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK

Dataset #: 4
Motif ID: 89
Motif name: ccCCmCACCcc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0584071

Alignment:
DDGGTGRGGBD
-BKAGGGGDAD

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.0606698

Alignment:
SSGGGCGGSGGCGSS
BKAGGGGDAD-----

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 3 Motif ID: 58 Motif name: NFKB1

Original motif     Consensus sequence: GGGGRTTCCCC Reverse complement motif     Consensus sequence: GGGGAAKCCCC

Best Matches for Motif ID 58 (Highest to Lowest)

Dataset #: 3
Motif ID: 64
Motif name: Tcfcp2l1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.103405

Alignment:
CKGGDTBDMMCTGG
GGGGRTTCCCC---

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Dataset #: 4
Motif ID: 77
Motif name: ssGCTswGCCms
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.108087

Alignment:
VBGCTSAGCCHB
-GGGGAAKCCCC

Original motif     Consensus sequence: VBGCTSAGCCHB Reverse complement motif     Consensus sequence: BDGGCTSAGCBV

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.112926

Alignment:
TTCAGCACCATGGACAGCKCC
GGGGAAKCCCC----------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.113723

Alignment:
SSCGCCSCCGCCCSS
---GGGGAAKCCCC-

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.116162

Alignment:
MSGKKRCGCWDCABTGBBCD
-GGGGAAKCCCC--------

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.117826

Alignment:
CCCCMAAMCAMCCMCMMMCV
-----GGGGAAKCCCC----

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.615517

Alignment:
BBCWGGCCAGCBB-
---GGGGAAKCCCC

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 3
Motif ID: 52
Motif name: Klf4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.616368

Alignment:
GCCYCMCCCD-
GGGGRTTCCCC

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD

Dataset #: 4
Motif ID: 70
Motif name: mkARGCCACG
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 9
Similarity score: 1.10675

Alignment:
--CKAGGCCACG
GGGGAAKCCCC-

Original motif     Consensus sequence: CKAGGCCACG Reverse complement motif     Consensus sequence: CGTGGCCTYG

Dataset #: 3
Motif ID: 37
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 9
Similarity score: 1.11497

Alignment:
--GGGGCCCAAGGGGG
GGGGRTTCCCC-----

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC

Dataset #: 3 Motif ID: 59 Motif name: NR1H2RXRA

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Best Matches for Motif ID 59 (Highest to Lowest)

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 17
Similarity score: 0.0911991

Alignment:
GGYGCTGTCCATGGTGCTGAA
---GTTGACCTTTGACCTTT-

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 1.05945

Alignment:
BTRGGDCARAGGKCA--
AAAGGTCAAAGGTCAAC

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 33
Motif name: RXRAVDR
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 1.09792

Alignment:
--GGGTCAWBGRGTTCA
AAAGGTCAAAGGTCAAC

Original motif     Consensus sequence: GGGTCAWBGRGTTCA Reverse complement motif     Consensus sequence: TGAACKCBWTGACCC

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 13
Similarity score: 2.08514

Alignment:
----VDBHMAGGTCACCCTGACCY
AAAGGTCAAAGGTCAAC-------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 2.08845

Alignment:
TKKTTTGTTTTTTT----
-GTTGACCTTTGACCTTT

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 3
Motif ID: 48
Motif name: EWSR1-FLI1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 12
Similarity score: 2.59335

Alignment:
GGAAGGAAGGAAGGAAGG-----
------AAAGGTCAAAGGTCAAC

Original motif     Consensus sequence: GGAAGGAAGGAAGGAAGG Reverse complement motif     Consensus sequence: CCTTCCTTCCTTCCTTCC

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 12
Number of overlap: 11
Similarity score: 3.09595

Alignment:
VRVDGGHACAVDDKGTHCTDWH------
-----------GTTGACCTTTGACCTTT

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 4
Motif ID: 93
Motif name: rrAGGGGGArr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 3.10003

Alignment:
VVAGGGGGAVV------
AAAGGTCAAAGGTCAAC

Original motif     Consensus sequence: VVAGGGGGAVV Reverse complement motif     Consensus sequence: VVTCCCCCTVV

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 10
Similarity score: 3.56221

Alignment:
-------VHRGGTCABDBTGMCCTB
AAAGGTCAAAGGTCAAC--------

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 4
Motif ID: 70
Motif name: mkARGCCACG
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 3.57909

Alignment:
CGTGGCCTYG-------
GTTGACCTTTGACCTTT

Original motif     Consensus sequence: CKAGGCCACG Reverse complement motif     Consensus sequence: CGTGGCCTYG

Dataset #: 3 Motif ID: 60 Motif name: NR4A2

Original motif     Consensus sequence: AAGGTCAC Reverse complement motif     Consensus sequence: GTGACCTT

Best Matches for Motif ID 60 (Highest to Lowest)

Dataset #: 3
Motif ID: 59
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0167759

Alignment:
AAAGGTCAAAGGTCAAC
-AAGGTCAC--------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0195235

Alignment:
VDBHMAGGTCACCCTGACCY
----AAGGTCAC--------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0198372

Alignment:
BAGGYCABHBTGACCKHV
---------GTGACCTT-

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 4
Motif ID: 70
Motif name: mkARGCCACG
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0377428

Alignment:
CGTGGCCTYG
-GTGACCTT-

Original motif     Consensus sequence: CKAGGCCACG Reverse complement motif     Consensus sequence: CGTGGCCTYG

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 13
Number of overlap: 8
Similarity score: 0.0487608

Alignment:
VRVDGGHACAVDDKGTHCTDWH
------------GTGACCTT--

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0495607

Alignment:
BTRGGDCARAGGKCA
-AAGGTCAC------

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 4
Motif ID: 103
Motif name: ccCCAGTGCAbr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0555579

Alignment:
DBTGCACTGGVD
-GTGACCTT---

Original motif     Consensus sequence: HVCCAGTGCABD Reverse complement motif     Consensus sequence: DBTGCACTGGVD

Dataset #: 3
Motif ID: 38
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0564874

Alignment:
AKGYYCAAAGRTCA
------AAGGTCAC

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0594649

Alignment:
GGYGCTGTCCATGGTGCTGAA
----GTGACCTT---------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 28
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0631514

Alignment:
BBVGCCBVGGCCTV
GTGACCTT------

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Dataset #: 3 Motif ID: 61 Motif name: Pax5

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Best Matches for Motif ID 61 (Highest to Lowest)

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 20
Similarity score: 0.040879

Alignment:
MGGTCAGGGTGACCTRDBHV
MSGKKRCGCWDCABTGBBCD

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 20
Similarity score: 0.0477129

Alignment:
VRVDGGHACAVDDKGTHCTDWH
--MSGKKRCGCWDCABTGBBCD

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 1.05456

Alignment:
BAGGYCABHBTGACCKHV--
MSGKKRCGCWDCABTGBBCD

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 1.06085

Alignment:
--GGYGCTGTCCATGGTGCTGAA
MSGKKRCGCWDCABTGBBCD---

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 63
Motif name: RXRRAR_DR5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 1.54082

Alignment:
---TGACCTCKVVBTGAYCK
MSGKKRCGCWDCABTGBBCD

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 17
Similarity score: 1.54834

Alignment:
HDAMACACAKKTKTKTHD---
-DGVBCABTGDWGCGKRRCSR

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 17
Similarity score: 1.56096

Alignment:
CCCCMAAMCAMCCMCMMMCV---
---MSGKKRCGCWDCABTGBBCD

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 2.55391

Alignment:
-----TGRCCTKTGHCCKAB
DGVBCABTGDWGCGKRRCSR

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 2.55604

Alignment:
SSGGGCGGSGGCGSS-----
MSGKKRCGCWDCABTGBBCD

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 3.05422

Alignment:
------HVCATGCATGCABD
MSGKKRCGCWDCABTGBBCD

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 3 Motif ID: 62 Motif name: RORA_1

Original motif     Consensus sequence: AWVDAGGTCA Reverse complement motif     Consensus sequence: TGACCTDVWT

Best Matches for Motif ID 62 (Highest to Lowest)

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0417851

Alignment:
MGGTCAGGGTGACCTRDBHV
---------TGACCTDVWT-

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 33
Motif name: RXRAVDR
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.05325

Alignment:
GGGTCAWBGRGTTCA
-----AWVDAGGTCA

Original motif     Consensus sequence: GGGTCAWBGRGTTCA Reverse complement motif     Consensus sequence: TGAACKCBWTGACCC

Dataset #: 3
Motif ID: 59
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.05425

Alignment:
AAAGGTCAAAGGTCAAC
-----AWVDAGGTCA--

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 63
Motif name: RXRRAR_DR5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0600761

Alignment:
TGACCTCKVVBTGAYCK
TGACCTDVWT-------

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK

Dataset #: 3
Motif ID: 38
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0654808

Alignment:
TGAMCTTTGMMCYT
----TGACCTDVWT

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.06668

Alignment:
BTRGGDCARAGGKCA
-----AWVDAGGTCA

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 10
Similarity score: 0.0755608

Alignment:
TTCAGCACCATGGACAGCKCC
------AWVDAGGTCA-----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 50
Motif name: HNF4A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0803396

Alignment:
RGGBCAAAGKYCA
---AWVDAGGTCA

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 13
Number of overlap: 10
Similarity score: 0.0814167

Alignment:
VRVDGGHACAVDDKGTHCTDWH
------------AWVDAGGTCA

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 4
Motif ID: 103
Motif name: ccCCAGTGCAbr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0826434

Alignment:
DBTGCACTGGVD
--TGACCTDVWT

Original motif     Consensus sequence: HVCCAGTGCABD Reverse complement motif     Consensus sequence: DBTGCACTGGVD

Dataset #: 3 Motif ID: 63 Motif name: RXRRAR_DR5

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK

Best Matches for Motif ID 63 (Highest to Lowest)

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0554256

Alignment:
MGGTCAGGGTGACCTRDBHV
---RGKTCABVVRGAGGTCA

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 17
Similarity score: 0.0590677

Alignment:
VHRGGTCABDBTGMCCTB
-TGACCTCKVVBTGAYCK

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 17
Similarity score: 0.0594693

Alignment:
MSGKKRCGCWDCABTGBBCD
---TGACCTCKVVBTGAYCK

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 17
Similarity score: 0.0751876

Alignment:
HWDAGHACRHHVTGTHCCHVMV
----TGACCTCKVVBTGAYCK-

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 1.0449

Alignment:
--BTRGGDCARAGGKCA
RGKTCABVVRGAGGTCA

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 33
Motif name: RXRAVDR
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 1.05297

Alignment:
GGGTCAWBGRGTTCA--
RGKTCABVVRGAGGTCA

Original motif     Consensus sequence: GGGTCAWBGRGTTCA Reverse complement motif     Consensus sequence: TGAACKCBWTGACCC

Dataset #: 3
Motif ID: 38
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 1.56607

Alignment:
---TGAMCTTTGMMCYT
TGACCTCKVVBTGAYCK

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 37
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 1.57917

Alignment:
GGGGCCCAAGGGGG---
RGKTCABVVRGAGGTCA

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC

Dataset #: 3
Motif ID: 50
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 2.0437

Alignment:
TGMYCTTTGBCCK----
TGACCTCKVVBTGAYCK

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 13
Similarity score: 2.06494

Alignment:
----CCCCMAAMCAMCCMCMMMCV
TGACCTCKVVBTGAYCK-------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 3 Motif ID: 64 Motif name: Tcfcp2l1

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Best Matches for Motif ID 64 (Highest to Lowest)

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0679942

Alignment:
HWDAGHACRHHVTGTHCCHVMV
------CCAGYYHVADCCRG--

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0713928

Alignment:
MGGTCAGGGTGACCTRDBHV
---CCAGYYHVADCCRG---

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 28
Motif name: Zfx
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0714852

Alignment:
BBVGCCBVGGCCTV
CCAGYYHVADCCRG

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0777364

Alignment:
BGRRRGRGGRTGRTTYGGGG
-----CKGGDTBDMMCTGG-

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0779784

Alignment:
SSCGCCSCCGCCCSS
-CCAGYYHVADCCRG

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 3
Motif ID: 37
Motif name: PLAG1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0817193

Alignment:
GGGGCCCAAGGGGG
CKGGDTBDMMCTGG

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0828703

Alignment:
VHRGGTCABDBTGMCCTB
----CKGGDTBDMMCTGG

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0829929

Alignment:
TGRCCTKTGHCCKAB
-CKGGDTBDMMCTGG

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 13
Similarity score: 0.575635

Alignment:
DGVBCABTGDWGCGKRRCSR-
-------CKGGDTBDMMCTGG

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 63
Motif name: RXRRAR_DR5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 13
Similarity score: 0.578477

Alignment:
RGKTCABVVRGAGGTCA-
----CKGGDTBDMMCTGG

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK

Dataset #: 4 Motif ID: 65 Motif name: ssCGrGCGss

Original motif     Consensus sequence: VSCGRGCGBV Reverse complement motif     Consensus sequence: VBCGCMCGSV

Best Matches for Motif ID 65 (Highest to Lowest)

Dataset #: 4
Motif ID: 66
Motif name: ssCGssCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0

Alignment:
VSCGSSCGSB
VBCGCMCGSV

Original motif     Consensus sequence: BSCGSSCGSV Reverse complement motif     Consensus sequence: VSCGSSCGSB

Dataset #: 4
Motif ID: 87
Motif name: ssCGGsYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0380615

Alignment:
VSCGGSCCGSB
VSCGRGCGBV-

Original motif     Consensus sequence: BSCGGSCCGSV Reverse complement motif     Consensus sequence: VSCGGSCCGSB

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0459192

Alignment:
BBCGGKGGMGBB
VSCGRGCGBV--

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4
Motif ID: 90
Motif name: ssCGsCwsCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0482532

Alignment:
BBCGSCWSCBB
VBCGCMCGSV-

Original motif     Consensus sequence: BBCGSCWSCBB Reverse complement motif     Consensus sequence: BBGSWGSCGBB

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0487331

Alignment:
VVGCSGGGCGBB
--VSCGRGCGBV

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 4
Motif ID: 94
Motif name: ssCGCksCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0500566

Alignment:
BBCGSRGCGVV
-VSCGRGCGBV

Original motif     Consensus sequence: VVCGCKSCGBB Reverse complement motif     Consensus sequence: BBCGSRGCGVV

Dataset #: 4
Motif ID: 73
Motif name: ssCGsCTCss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0533306

Alignment:
BBGAGSCGVV
VSCGRGCGBV

Original motif     Consensus sequence: VVCGSCTCBB Reverse complement motif     Consensus sequence: BBGAGSCGVV

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.0556174

Alignment:
SSCGCCSCCGCCCSS
VBCGCMCGSV-----

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 4
Motif ID: 72
Motif name: ssCKCwsCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0590467

Alignment:
VBCGSWGCGVB
-VSCGRGCGBV

Original motif     Consensus sequence: BVCGCWSCGBV Reverse complement motif     Consensus sequence: VBCGSWGCGVB

Dataset #: 4
Motif ID: 78
Motif name: sssCGssGCsss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0607038

Alignment:
SSSGCSSCGSSS
-VSCGRGCGBV-

Original motif     Consensus sequence: SSSCGSSGCSSS Reverse complement motif     Consensus sequence: SSSGCSSCGSSS

Dataset #: 4 Motif ID: 66 Motif name: ssCGssCGss

Original motif     Consensus sequence: BSCGSSCGSV Reverse complement motif     Consensus sequence: VSCGSSCGSB

Best Matches for Motif ID 66 (Highest to Lowest)

Dataset #: 4
Motif ID: 65
Motif name: ssCGrGCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0

Alignment:
VBCGCMCGSV
VSCGSSCGSB

Original motif     Consensus sequence: VSCGRGCGBV Reverse complement motif     Consensus sequence: VBCGCMCGSV

Dataset #: 4
Motif ID: 87
Motif name: ssCGGsYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0371913

Alignment:
VSCGGSCCGSB
BSCGSSCGSV-

Original motif     Consensus sequence: BSCGGSCCGSV Reverse complement motif     Consensus sequence: VSCGGSCCGSB

Dataset #: 4
Motif ID: 78
Motif name: sssCGssGCsss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0470049

Alignment:
SSSGCSSCGSSS
-VSCGSSCGSB-

Original motif     Consensus sequence: SSSCGSSGCSSS Reverse complement motif     Consensus sequence: SSSGCSSCGSSS

Dataset #: 4
Motif ID: 90
Motif name: ssCGsCwsCss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.049129

Alignment:
BBGSWGSCGBB
-BSCGSSCGSV

Original motif     Consensus sequence: BBCGSCWSCBB Reverse complement motif     Consensus sequence: BBGSWGSCGBB

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0497103

Alignment:
BBCGGKGGMGBB
BSCGSSCGSV--

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4
Motif ID: 73
Motif name: ssCGsCTCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0521822

Alignment:
VVCGSCTCBB
BSCGSSCGSV

Original motif     Consensus sequence: VVCGSCTCBB Reverse complement motif     Consensus sequence: BBGAGSCGVV

Dataset #: 4
Motif ID: 94
Motif name: ssCGCksCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0583987

Alignment:
VVCGCKSCGBB
-BSCGSSCGSV

Original motif     Consensus sequence: VVCGCKSCGBB Reverse complement motif     Consensus sequence: BBCGSRGCGVV

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.0642479

Alignment:
SSCGCCSCCGCCCSS
VSCGSSCGSB-----

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0646516

Alignment:
VVGCSGGGCGBB
--VSCGSSCGSB

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 3
Motif ID: 56
Motif name: Mycn
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0718705

Alignment:
HSCACGTGGC
BSCGSSCGSV

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD

Dataset #: 4 Motif ID: 67 Motif name: ssGMsGRGCGss

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Best Matches for Motif ID 67 (Highest to Lowest)

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0191911

Alignment:
BBCGGKGGMGBB
VVGCSGGGCGBB

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4
Motif ID: 78
Motif name: sssCGssGCsss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0208422

Alignment:
SSSGCSSCGSSS
BBCGCCCSGCVV

Original motif     Consensus sequence: SSSCGSSGCSSS Reverse complement motif     Consensus sequence: SSSGCSSCGSSS

Dataset #: 4
Motif ID: 77
Motif name: ssGCTswGCCms
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0271966

Alignment:
VBGCTSAGCCHB
VVGCSGGGCGBB

Original motif     Consensus sequence: VBGCTSAGCCHB Reverse complement motif     Consensus sequence: BDGGCTSAGCBV

Dataset #: 3
Motif ID: 28
Motif name: Zfx
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0349435

Alignment:
BBVGCCBVGGCCTV
--VVGCSGGGCGBB

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0401057

Alignment:
SSCGCCSCCGCCCSS
-BBCGCCCSGCVV--

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.0452303

Alignment:
DGVBCABTGDWGCGKRRCSR
----VVGCSGGGCGBB----

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 4
Motif ID: 103
Motif name: ccCCAGTGCAbr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.046174

Alignment:
DBTGCACTGGVD
BBCGCCCSGCVV

Original motif     Consensus sequence: HVCCAGTGCABD Reverse complement motif     Consensus sequence: DBTGCACTGGVD

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0464618

Alignment:
VDBHMAGGTCACCCTGACCY
-VVGCSGGGCGBB-------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.046753

Alignment:
CCCCMAAMCAMCCMCMMMCV
--BBCGCCCSGCVV------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0498034

Alignment:
BBCWGGCCAGCBB
-BBCGCCCSGCVV

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 4 Motif ID: 68 Motif name: dwCTTTTCwy

Original motif     Consensus sequence: DHCTTTTCHH Reverse complement motif     Consensus sequence: DHGAAAAGHD

Best Matches for Motif ID 68 (Highest to Lowest)

Dataset #: 4
Motif ID: 71
Motif name: wyATTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.00508721

Alignment:
DDTAAAATHD
DHGAAAAGHD

Original motif     Consensus sequence: DHATTTTADD Reverse complement motif     Consensus sequence: DDTAAAATHD

Dataset #: 4
Motif ID: 81
Motif name: wwTAAwAAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0148156

Alignment:
DDTAAWAAHH
DHGAAAAGHD

Original motif     Consensus sequence: DDTAAWAAHH Reverse complement motif     Consensus sequence: HHTTWTTADD

Dataset #: 4
Motif ID: 76
Motif name: wwWAAAAAwa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0152278

Alignment:
WWAAAAAAWH
DHGAAAAGHD

Original motif     Consensus sequence: WWAAAAAAWH Reverse complement motif     Consensus sequence: HWTTTTTTWW

Dataset #: 4
Motif ID: 83
Motif name: wwTAAAwAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0196583

Alignment:
DDTAAAWAHH
DHGAAAAGHD

Original motif     Consensus sequence: DDTAAAWAHH Reverse complement motif     Consensus sequence: HHTWTTTADD

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0226988

Alignment:
DDTAAAAATHD
DHGAAAAGHD-

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 10
Similarity score: 0.0242678

Alignment:
GGYGCTGTCCATGGTGCTGAA
---------DHCTTTTCHH--

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0309896

Alignment:
HTGTTTTTGHH
-DHCTTTTCHH

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0311578

Alignment:
TTGTTTTGTTT
DHCTTTTCHH-

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 3
Motif ID: 50
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.03324

Alignment:
RGGBCAAAGKYCA
--DHGAAAAGHD-

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0365489

Alignment:
BBTCTKTKTCHB
-DHCTTTTCHH-

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4 Motif ID: 69 Motif name: aaACAAAACaa

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Best Matches for Motif ID 69 (Highest to Lowest)

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.00867165

Alignment:
HTGTTTTTGHH
TTGTTTTGTTT

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0148063

Alignment:
AAAAAAAAAAA
AAACAAAACAA

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0458549

Alignment:
AAAAAAACAAARRA
AAACAAAACAA---

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.046421

Alignment:
DHATTTTTADD
TTGTTTTGTTT

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 82
Motif name: rmACAGCAGsr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.052053

Alignment:
VVACAGCAGVD
AAACAAAACAA

Original motif     Consensus sequence: VVACAGCAGVD Reverse complement motif     Consensus sequence: DVCTGCTGTVB

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0556289

Alignment:
CCCCMAAMCAMCCMCMMMCV
AAACAAAACAA---------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0592379

Alignment:
BBTCTKTKTCHB
TTGTTTTGTTT-

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0600308

Alignment:
DHKATGTKTKTGTD
---TTGTTTTGTTT

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0637357

Alignment:
HDAMACACAKKTKTKTHD
-------TTGTTTTGTTT

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0656255

Alignment:
CACACACACACA
-AAACAAAACAA

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4 Motif ID: 70 Motif name: mkARGCCACG

Original motif     Consensus sequence: CKAGGCCACG Reverse complement motif     Consensus sequence: CGTGGCCTYG

Best Matches for Motif ID 70 (Highest to Lowest)

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 10
Similarity score: 0.0498081

Alignment:
BAGGYCABHBTGACCKHV
--------CGTGGCCTYG

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0634965

Alignment:
MGGTCAGGGTGACCTRDBHV
-------CGTGGCCTYG---

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 59
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 10
Similarity score: 0.0768331

Alignment:
GTTGACCTTTGACCTTT
CGTGGCCTYG-------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0829671

Alignment:
TGRCCTKTGHCCKAB
-----CGTGGCCTYG

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 12
Number of overlap: 10
Similarity score: 0.0846072

Alignment:
VRVDGGHACAVDDKGTHCTDWH
-----------CGTGGCCTYG-

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 3
Motif ID: 37
Motif name: PLAG1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0859542

Alignment:
GGGGCCCAAGGGGG
----CGTGGCCTYG

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0865308

Alignment:
BGRRRGRGGRTGRTTYGGGG
--------CGTGGCCTYG--

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 99
Motif name: sgCTGGCCAGcs
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0870749

Alignment:
VVCTGGCCAGBB
-CKAGGCCACG-

Original motif     Consensus sequence: BBCTGGCCAGVV Reverse complement motif     Consensus sequence: VVCTGGCCAGBB

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0877916

Alignment:
BBGCTGGCCWGBB
--CGTGGCCTYG-

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0882064

Alignment:
GGYGCTGTCCATGGTGCTGAA
---CGTGGCCTYG--------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4 Motif ID: 71 Motif name: wyATTTTAww

Original motif     Consensus sequence: DHATTTTADD Reverse complement motif     Consensus sequence: DDTAAAATHD

Best Matches for Motif ID 71 (Highest to Lowest)

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0

Alignment:
DHATTTTTADD
DHATTTTADD-

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 81
Motif name: wwTAAwAAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.00285443

Alignment:
DDTAAWAAHH
DDTAAAATHD

Original motif     Consensus sequence: DDTAAWAAHH Reverse complement motif     Consensus sequence: HHTTWTTADD

Dataset #: 4
Motif ID: 83
Motif name: wwTAAAwAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.00437246

Alignment:
DDTAAAWAHH
DDTAAAATHD

Original motif     Consensus sequence: DDTAAAWAHH Reverse complement motif     Consensus sequence: HHTWTTTADD

Dataset #: 4
Motif ID: 76
Motif name: wwWAAAAAwa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0153432

Alignment:
WWAAAAAAWH
DDTAAAATHD

Original motif     Consensus sequence: WWAAAAAAWH Reverse complement motif     Consensus sequence: HWTTTTTTWW

Dataset #: 4
Motif ID: 68
Motif name: dwCTTTTCwy
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0177129

Alignment:
DHGAAAAGHD
DDTAAAATHD

Original motif     Consensus sequence: DHCTTTTCHH Reverse complement motif     Consensus sequence: DHGAAAAGHD

Dataset #: 4
Motif ID: 104
Motif name: wtTTWwAAAaw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0302024

Alignment:
DDTTTWAAAHH
DHATTTTADD-

Original motif     Consensus sequence: HHTTTWAAADD Reverse complement motif     Consensus sequence: DDTTTWAAAHH

Dataset #: 4
Motif ID: 74
Motif name: twTACATAvw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0367109

Alignment:
DBTATGTAHH
DHATTTTADD

Original motif     Consensus sequence: HHTACATAVD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0372694

Alignment:
HHCAAAAACAH
DDTAAAATHD-

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0401253

Alignment:
AAACAAAACAA
DDTAAAATHD-

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0513368

Alignment:
AAAAAAAAAAA
DDTAAAATHD-

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 4 Motif ID: 72 Motif name: ssCKCwsCGss

Original motif     Consensus sequence: BVCGCWSCGBV Reverse complement motif     Consensus sequence: VBCGSWGCGVB

Best Matches for Motif ID 72 (Highest to Lowest)

Dataset #: 4
Motif ID: 94
Motif name: ssCGCksCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0

Alignment:
VVCGCKSCGBB
BVCGCWSCGBV

Original motif     Consensus sequence: VVCGCKSCGBB Reverse complement motif     Consensus sequence: BBCGSRGCGVV

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0297341

Alignment:
VVGCSGGGCGBB
VBCGSWGCGVB-

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 4
Motif ID: 78
Motif name: sssCGssGCsss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0348528

Alignment:
SSSCGSSGCSSS
-VBCGSWGCGVB

Original motif     Consensus sequence: SSSCGSSGCSSS Reverse complement motif     Consensus sequence: SSSGCSSCGSSS

Dataset #: 4
Motif ID: 77
Motif name: ssGCTswGCCms
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0369739

Alignment:
BDGGCTSAGCBV
BVCGCWSCGBV-

Original motif     Consensus sequence: VBGCTSAGCCHB Reverse complement motif     Consensus sequence: BDGGCTSAGCBV

Dataset #: 4
Motif ID: 87
Motif name: ssCGGsYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.040396

Alignment:
BSCGGSCCGSV
BVCGCWSCGBV

Original motif     Consensus sequence: BSCGGSCCGSV Reverse complement motif     Consensus sequence: VSCGGSCCGSB

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.049995

Alignment:
MSGKKRCGCWDCABTGBBCD
-----BVCGCWSCGBV----

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0534664

Alignment:
BBCRCCYCCGBB
BVCGCWSCGBV-

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0556993

Alignment:
SSGGGCGGSGGCGSS
----VBCGSWGCGVB

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 4
Motif ID: 103
Motif name: ccCCAGTGCAbr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0575189

Alignment:
HVCCAGTGCABD
-VBCGSWGCGVB

Original motif     Consensus sequence: HVCCAGTGCABD Reverse complement motif     Consensus sequence: DBTGCACTGGVD

Dataset #: 4
Motif ID: 90
Motif name: ssCGsCwsCss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0590938

Alignment:
BBGSWGSCGBB
BVCGCWSCGBV

Original motif     Consensus sequence: BBCGSCWSCBB Reverse complement motif     Consensus sequence: BBGSWGSCGBB

Dataset #: 4 Motif ID: 73 Motif name: ssCGsCTCss

Original motif     Consensus sequence: VVCGSCTCBB Reverse complement motif     Consensus sequence: BBGAGSCGVV

Best Matches for Motif ID 73 (Highest to Lowest)

Dataset #: 4
Motif ID: 90
Motif name: ssCGsCwsCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0

Alignment:
BBGSWGSCGBB
-BBGAGSCGVV

Original motif     Consensus sequence: BBCGSCWSCBB Reverse complement motif     Consensus sequence: BBGSWGSCGBB

Dataset #: 4
Motif ID: 78
Motif name: sssCGssGCsss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0108856

Alignment:
SSSCGSSGCSSS
-VVCGSCTCBB-

Original motif     Consensus sequence: SSSCGSSGCSSS Reverse complement motif     Consensus sequence: SSSGCSSCGSSS

Dataset #: 4
Motif ID: 94
Motif name: ssCGCksCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0139257

Alignment:
VVCGCKSCGBB
-BBGAGSCGVV

Original motif     Consensus sequence: VVCGCKSCGBB Reverse complement motif     Consensus sequence: BBCGSRGCGVV

Dataset #: 4
Motif ID: 87
Motif name: ssCGGsYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0162661

Alignment:
BSCGGSCCGSV
VVCGSCTCBB-

Original motif     Consensus sequence: BSCGGSCCGSV Reverse complement motif     Consensus sequence: VSCGGSCCGSB

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.0236639

Alignment:
SSCGCCSCCGCCCSS
VVCGSCTCBB-----

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 4
Motif ID: 66
Motif name: ssCGssCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0241432

Alignment:
BSCGSSCGSV
VVCGSCTCBB

Original motif     Consensus sequence: BSCGSSCGSV Reverse complement motif     Consensus sequence: VSCGSSCGSB

Dataset #: 4
Motif ID: 65
Motif name: ssCGrGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0252915

Alignment:
VBCGCMCGSV
VVCGSCTCBB

Original motif     Consensus sequence: VSCGRGCGBV Reverse complement motif     Consensus sequence: VBCGCMCGSV

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0315402

Alignment:
BBCGCCCSGCVV
--VVCGSCTCBB

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 4
Motif ID: 72
Motif name: ssCKCwsCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0340702

Alignment:
VBCGSWGCGVB
-VVCGSCTCBB

Original motif     Consensus sequence: BVCGCWSCGBV Reverse complement motif     Consensus sequence: VBCGSWGCGVB

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0353522

Alignment:
BBCRCCYCCGBB
VVCGSCTCBB--

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4 Motif ID: 74 Motif name: twTACATAvw

Original motif     Consensus sequence: HHTACATAVD Reverse complement motif     Consensus sequence: DBTATGTAHH

Best Matches for Motif ID 74 (Highest to Lowest)

Dataset #: 4
Motif ID: 83
Motif name: wwTAAAwAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0257442

Alignment:
HHTWTTTADD
DBTATGTAHH

Original motif     Consensus sequence: DDTAAAWAHH Reverse complement motif     Consensus sequence: HHTWTTTADD

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0533752

Alignment:
HACAYAYACATRHD
----HHTACATAVD

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 4
Motif ID: 81
Motif name: wwTAAwAAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0539475

Alignment:
HHTTWTTADD
DBTATGTAHH

Original motif     Consensus sequence: DDTAAWAAHH Reverse complement motif     Consensus sequence: HHTTWTTADD

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0566693

Alignment:
DHATTTTTADD
-DBTATGTAHH

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 71
Motif name: wyATTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0617069

Alignment:
DDTAAAATHD
HHTACATAVD

Original motif     Consensus sequence: DHATTTTADD Reverse complement motif     Consensus sequence: DDTAAAATHD

Dataset #: 4
Motif ID: 100
Motif name: wrTGTATACAyw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.066134

Alignment:
HDTGTATACAHD
--DBTATGTAHH

Original motif     Consensus sequence: HDTGTATACAHD Reverse complement motif     Consensus sequence: DHTGTATACADH

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0685784

Alignment:
DHAYAYAYRTGTGTRTDH
-------DBTATGTAHH-

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 4
Motif ID: 76
Motif name: wwWAAAAAwa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0689249

Alignment:
HWTTTTTTWW
DBTATGTAHH

Original motif     Consensus sequence: WWAAAAAAWH Reverse complement motif     Consensus sequence: HWTTTTTTWW

Dataset #: 4
Motif ID: 104
Motif name: wtTTWwAAAaw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0714832

Alignment:
DDTTTWAAAHH
DBTATGTAHH-

Original motif     Consensus sequence: HHTTTWAAADD Reverse complement motif     Consensus sequence: DDTTTWAAAHH

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0731139

Alignment:
HVCATGCATGCABD
----DBTATGTAHH

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 4 Motif ID: 75 Motif name: yayAyAyACATrya

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Best Matches for Motif ID 75 (Highest to Lowest)

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.00454532

Alignment:
DHAYAYAYRTGTGTRTDH
-HACAYAYACATRHD---

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0308807

Alignment:
HVCATGCATGCABD
HACAYAYACATRHD

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0331837

Alignment:
CAYACACACACACA
HACAYAYACATRHD

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 2
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0402474

Alignment:
CACACAVRCACACA
HACAYAYACATRHD

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0442476

Alignment:
HWDAGHACRHHVTGTHCCHVMV
DHKATGTKTKTGTD--------

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 4
Motif ID: 98
Motif name: wwTAATTAATTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0490963

Alignment:
HDTAATTAATTAHD
HACAYAYACATRHD

Original motif     Consensus sequence: HDTAATTAATTAHD Reverse complement motif     Consensus sequence: DHTAATTAATTADH

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0493713

Alignment:
AAAAAAACAAARRA
HACAYAYACATRHD

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 14
Similarity score: 0.0516607

Alignment:
DGVBCABTGDWGCGKRRCSR
----DHKATGTKTKTGTD--

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 14
Similarity score: 0.0532406

Alignment:
CCCCMAAMCAMCCMCMMMCV
------HACAYAYACATRHD

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 3
Motif ID: 63
Motif name: RXRRAR_DR5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0575008

Alignment:
RGKTCABVVRGAGGTCA
--HACAYAYACATRHD-

Original motif     Consensus sequence: RGKTCABVVRGAGGTCA Reverse complement motif     Consensus sequence: TGACCTCKVVBTGAYCK

Dataset #: 4 Motif ID: 76 Motif name: wwWAAAAAwa

Original motif     Consensus sequence: WWAAAAAAWH Reverse complement motif     Consensus sequence: HWTTTTTTWW

Best Matches for Motif ID 76 (Highest to Lowest)

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.00795084

Alignment:
DHATTTTTADD
-HWTTTTTTWW

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 81
Motif name: wwTAAwAAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0105869

Alignment:
DDTAAWAAHH
WWAAAAAAWH

Original motif     Consensus sequence: DDTAAWAAHH Reverse complement motif     Consensus sequence: HHTTWTTADD

Dataset #: 4
Motif ID: 83
Motif name: wwTAAAwAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0135165

Alignment:
DDTAAAWAHH
WWAAAAAAWH

Original motif     Consensus sequence: DDTAAAWAHH Reverse complement motif     Consensus sequence: HHTWTTTADD

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0137579

Alignment:
TTTTTTTTTTT
HWTTTTTTWW-

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0272712

Alignment:
HHCAAAAACAH
WWAAAAAAWH-

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 71
Motif name: wyATTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0288034

Alignment:
DDTAAAATHD
WWAAAAAAWH

Original motif     Consensus sequence: DHATTTTADD Reverse complement motif     Consensus sequence: DDTAAAATHD

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0387825

Alignment:
AAACAAAACAA
WWAAAAAAWH-

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 4
Motif ID: 104
Motif name: wtTTWwAAAaw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0395975

Alignment:
HHTTTWAAADD
-WWAAAAAAWH

Original motif     Consensus sequence: HHTTTWAAADD Reverse complement motif     Consensus sequence: DDTTTWAAAHH

Dataset #: 4
Motif ID: 68
Motif name: dwCTTTTCwy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0413137

Alignment:
DHCTTTTCHH
HWTTTTTTWW

Original motif     Consensus sequence: DHCTTTTCHH Reverse complement motif     Consensus sequence: DHGAAAAGHD

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0498611

Alignment:
AAAAAAACAAARRA
WWAAAAAAWH----

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 4 Motif ID: 77 Motif name: ssGCTswGCCms

Original motif     Consensus sequence: VBGCTSAGCCHB Reverse complement motif     Consensus sequence: BDGGCTSAGCBV

Best Matches for Motif ID 77 (Highest to Lowest)

Dataset #: 4
Motif ID: 78
Motif name: sssCGssGCsss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0634646

Alignment:
SSSCGSSGCSSS
VBGCTSAGCCHB

Original motif     Consensus sequence: SSSCGSSGCSSS Reverse complement motif     Consensus sequence: SSSGCSSCGSSS

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0636848

Alignment:
VVGCSGGGCGBB
VBGCTSAGCCHB

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 3
Motif ID: 28
Motif name: Zfx
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.075549

Alignment:
BBVGCCBVGGCCTV
--VBGCTSAGCCHB

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Dataset #: 4
Motif ID: 103
Motif name: ccCCAGTGCAbr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0787476

Alignment:
DBTGCACTGGVD
BDGGCTSAGCBV

Original motif     Consensus sequence: HVCCAGTGCABD Reverse complement motif     Consensus sequence: DBTGCACTGGVD

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0787512

Alignment:
BBTCTKTKTCHB
VBGCTSAGCCHB

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0821079

Alignment:
BBGCTGGCCWGBB
VBGCTSAGCCHB-

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 12
Similarity score: 0.082174

Alignment:
TTCAGCACCATGGACAGCKCC
-BDGGCTSAGCBV--------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0858473

Alignment:
VRVDGGHACAVDDKGTHCTDWH
--BDGGCTSAGCBV--------

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.08799

Alignment:
MSGKKRCGCWDCABTGBBCD
--------VBGCTSAGCCHB

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0909909

Alignment:
BTRGGDCARAGGKCA
-BDGGCTSAGCBV--

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 4 Motif ID: 78 Motif name: sssCGssGCsss

Original motif     Consensus sequence: SSSCGSSGCSSS Reverse complement motif     Consensus sequence: SSSGCSSCGSSS

Best Matches for Motif ID 78 (Highest to Lowest)

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0315939

Alignment:
BBCGCCCSGCVV
SSSGCSSCGSSS

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 4
Motif ID: 77
Motif name: ssGCTswGCCms
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0377281

Alignment:
VBGCTSAGCCHB
SSSCGSSGCSSS

Original motif     Consensus sequence: VBGCTSAGCCHB Reverse complement motif     Consensus sequence: BDGGCTSAGCBV

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0388517

Alignment:
SSGGGCGGSGGCGSS
-SSSGCSSCGSSS--

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 3
Motif ID: 28
Motif name: Zfx
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0423285

Alignment:
BBVGCCBVGGCCTV
--SSSCGSSGCSSS

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0430105

Alignment:
BBCRCCYCCGBB
SSSGCSSCGSSS

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4
Motif ID: 103
Motif name: ccCCAGTGCAbr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0624096

Alignment:
HVCCAGTGCABD
SSSCGSSGCSSS

Original motif     Consensus sequence: HVCCAGTGCABD Reverse complement motif     Consensus sequence: DBTGCACTGGVD

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 12
Similarity score: 0.0679556

Alignment:
MGGTCAGGGTGACCTRDBHV
--SSSCGSSGCSSS------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 12
Similarity score: 0.0682726

Alignment:
DGVBCABTGDWGCGKRRCSR
----SSSCGSSGCSSS----

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 12
Similarity score: 0.0738808

Alignment:
HWDAGHACRHHVTGTHCCHVMV
SSSGCSSCGSSS----------

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 4
Motif ID: 99
Motif name: sgCTGGCCAGcs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0745276

Alignment:
BBCTGGCCAGVV
SSSCGSSGCSSS

Original motif     Consensus sequence: BBCTGGCCAGVV Reverse complement motif     Consensus sequence: VVCTGGCCAGBB

Dataset #: 4 Motif ID: 79 Motif name: CACACACACACA

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Best Matches for Motif ID 79 (Highest to Lowest)

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0

Alignment:
CACACACACACA
CACACACACACA

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0113504

Alignment:
TGTGTGTGTGTKTG
TGTGTGTGTGTG--

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 2
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0320014

Alignment:
CACACAVRCACACA
--CACACACACACA

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0651765

Alignment:
HACAYAYACATRHD
CACACACACACA--

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 12
Similarity score: 0.0845978

Alignment:
DHAYAYAYRTGTGTRTDH
-----TGTGTGTGTGTG-

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0847238

Alignment:
BBTCTKTKTCHB
TGTGTGTGTGTG

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0887811

Alignment:
HVCATGCATGCABD
CACACACACACA--

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 12
Similarity score: 0.0899886

Alignment:
CCCCMAAMCAMCCMCMMMCV
----CACACACACACA----

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.100107

Alignment:
AAAAAAACAAARRA
-CACACACACACA-

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 4
Motif ID: 96
Motif name: yrTGTGCACAyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.102069

Alignment:
BVTGTGCACABV
CACACACACACA

Original motif     Consensus sequence: BVTGTGCACABV Reverse complement motif     Consensus sequence: BBTGTGCACAVV

Dataset #: 4 Motif ID: 80 Motif name: ssCwGGCCwGCss

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Best Matches for Motif ID 80 (Highest to Lowest)

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 13
Similarity score: 0.0567908

Alignment:
MGGTCAGGGTGACCTRDBHV
-----BBGCTGGCCWGBB--

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0602708

Alignment:
TTCAGCACCATGGACAGCKCC
-------BBCWGGCCAGCBB-

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0626373

Alignment:
DVTGCATGCATGBH
-BBGCTGGCCWGBB

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0725196

Alignment:
MSGKKRCGCWDCABTGBBCD
-----BBGCTGGCCWGBB--

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 13
Similarity score: 0.0752365

Alignment:
HWDAGHACRHHVTGTHCCHVMV
---------BBCWGGCCAGCBB

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0852017

Alignment:
SSGGGCGGSGGCGSS
--BBGCTGGCCWGBB

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0853399

Alignment:
BGRRRGRGGRTGRTTYGGGG
------BBGCTGGCCWGBB-

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 99
Motif name: sgCTGGCCAGcs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.5

Alignment:
BBCTGGCCAGVV-
BBCWGGCCAGCBB

Original motif     Consensus sequence: BBCTGGCCAGVV Reverse complement motif     Consensus sequence: VVCTGGCCAGBB

Dataset #: 4
Motif ID: 77
Motif name: ssGCTswGCCms
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.567169

Alignment:
BDGGCTSAGCBV-
BBCWGGCCAGCBB

Original motif     Consensus sequence: VBGCTSAGCCHB Reverse complement motif     Consensus sequence: BDGGCTSAGCBV

Dataset #: 4
Motif ID: 103
Motif name: ccCCAGTGCAbr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.56993

Alignment:
-DBTGCACTGGVD
BBCWGGCCAGCBB

Original motif     Consensus sequence: HVCCAGTGCABD Reverse complement motif     Consensus sequence: DBTGCACTGGVD

Dataset #: 4 Motif ID: 81 Motif name: wwTAAwAAww

Original motif     Consensus sequence: DDTAAWAAHH Reverse complement motif     Consensus sequence: HHTTWTTADD

Best Matches for Motif ID 81 (Highest to Lowest)

Dataset #: 4
Motif ID: 83
Motif name: wwTAAAwAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0

Alignment:
DDTAAAWAHH
DDTAAWAAHH

Original motif     Consensus sequence: DDTAAAWAHH Reverse complement motif     Consensus sequence: HHTWTTTADD

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.00383605

Alignment:
DHATTTTTADD
-HHTTWTTADD

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 76
Motif name: wwWAAAAAwa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0119297

Alignment:
WWAAAAAAWH
DDTAAWAAHH

Original motif     Consensus sequence: WWAAAAAAWH Reverse complement motif     Consensus sequence: HWTTTTTTWW

Dataset #: 4
Motif ID: 71
Motif name: wyATTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0176574

Alignment:
DHATTTTADD
HHTTWTTADD

Original motif     Consensus sequence: DHATTTTADD Reverse complement motif     Consensus sequence: DDTAAAATHD

Dataset #: 4
Motif ID: 104
Motif name: wtTTWwAAAaw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0376356

Alignment:
HHTTTWAAADD
-DDTAAWAAHH

Original motif     Consensus sequence: HHTTTWAAADD Reverse complement motif     Consensus sequence: DDTTTWAAAHH

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0380114

Alignment:
HHCAAAAACAH
DDTAAWAAHH-

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 68
Motif name: dwCTTTTCwy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0422443

Alignment:
DHCTTTTCHH
HHTTWTTADD

Original motif     Consensus sequence: DHCTTTTCHH Reverse complement motif     Consensus sequence: DHGAAAAGHD

Dataset #: 4
Motif ID: 74
Motif name: twTACATAvw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0437545

Alignment:
DBTATGTAHH
HHTTWTTADD

Original motif     Consensus sequence: HHTACATAVD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 4
Motif ID: 98
Motif name: wwTAATTAATTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0451418

Alignment:
DHTAATTAATTADH
HHTTWTTADD----

Original motif     Consensus sequence: HDTAATTAATTAHD Reverse complement motif     Consensus sequence: DHTAATTAATTADH

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0493427

Alignment:
TTTTTTTTTTT
-HHTTWTTADD

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 4 Motif ID: 82 Motif name: rmACAGCAGsr

Original motif     Consensus sequence: VVACAGCAGVD Reverse complement motif     Consensus sequence: DVCTGCTGTVB

Best Matches for Motif ID 82 (Highest to Lowest)

Dataset #: 4
Motif ID: 90
Motif name: ssCGsCwsCss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0342871

Alignment:
BBGSWGSCGBB
VVACAGCAGVD

Original motif     Consensus sequence: BBCGSCWSCBB Reverse complement motif     Consensus sequence: BBGSWGSCGBB

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0446457

Alignment:
AAACAAAACAA
VVACAGCAGVD

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0606795

Alignment:
MSGKKRCGCWDCABTGBBCD
------DVCTGCTGTVB---

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 4
Motif ID: 103
Motif name: ccCCAGTGCAbr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0611048

Alignment:
HVCCAGTGCABD
DVCTGCTGTVB-

Original motif     Consensus sequence: HVCCAGTGCABD Reverse complement motif     Consensus sequence: DBTGCACTGGVD

Dataset #: 4
Motif ID: 99
Motif name: sgCTGGCCAGcs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0617776

Alignment:
BBCTGGCCAGVV
-VVACAGCAGVD

Original motif     Consensus sequence: BBCTGGCCAGVV Reverse complement motif     Consensus sequence: VVCTGGCCAGBB

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0619045

Alignment:
BBGCTGGCCWGBB
-DVCTGCTGTVB-

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0619551

Alignment:
VHRGGTCABDBTGMCCTB
VVACAGCAGVD-------

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.064093

Alignment:
VHGARAYAGAVV
VVACAGCAGVD-

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 87
Motif name: ssCGGsYCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0648198

Alignment:
BSCGGSCCGSV
DVCTGCTGTVB

Original motif     Consensus sequence: BSCGGSCCGSV Reverse complement motif     Consensus sequence: VSCGGSCCGSB

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0649769

Alignment:
BBCRCCYCCGBB
-VVACAGCAGVD

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4 Motif ID: 83 Motif name: wwTAAAwAww

Original motif     Consensus sequence: DDTAAAWAHH Reverse complement motif     Consensus sequence: HHTWTTTADD

Best Matches for Motif ID 83 (Highest to Lowest)

Dataset #: 4
Motif ID: 81
Motif name: wwTAAwAAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0

Alignment:
DDTAAWAAHH
DDTAAAWAHH

Original motif     Consensus sequence: DDTAAWAAHH Reverse complement motif     Consensus sequence: HHTTWTTADD

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.00769202

Alignment:
DHATTTTTADD
-HHTWTTTADD

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 76
Motif name: wwWAAAAAwa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0148593

Alignment:
WWAAAAAAWH
DDTAAAWAHH

Original motif     Consensus sequence: WWAAAAAAWH Reverse complement motif     Consensus sequence: HWTTTTTTWW

Dataset #: 4
Motif ID: 74
Motif name: twTACATAvw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0155512

Alignment:
DBTATGTAHH
HHTWTTTADD

Original motif     Consensus sequence: HHTACATAVD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 4
Motif ID: 71
Motif name: wyATTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0191754

Alignment:
DHATTTTADD
HHTWTTTADD

Original motif     Consensus sequence: DHATTTTADD Reverse complement motif     Consensus sequence: DDTAAAATHD

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0386588

Alignment:
HHCAAAAACAH
DDTAAAWAHH-

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 104
Motif name: wtTTWwAAAaw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0400542

Alignment:
HHTTTWAAADD
-DDTAAAWAHH

Original motif     Consensus sequence: HHTTTWAAADD Reverse complement motif     Consensus sequence: DDTTTWAAAHH

Dataset #: 4
Motif ID: 98
Motif name: wwTAATTAATTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0425216

Alignment:
DHTAATTAATTADH
HHTWTTTADD----

Original motif     Consensus sequence: HDTAATTAATTAHD Reverse complement motif     Consensus sequence: DHTAATTAATTADH

Dataset #: 4
Motif ID: 68
Motif name: dwCTTTTCwy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0470869

Alignment:
DHCTTTTCHH
HHTWTTTADD

Original motif     Consensus sequence: DHCTTTTCHH Reverse complement motif     Consensus sequence: DHGAAAAGHD

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0497246

Alignment:
TTTTTTTTTTT
-HHTWTTTADD

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 4 Motif ID: 84 Motif name: wsAGCTACwy

Original motif     Consensus sequence: DVAGCTACHB Reverse complement motif     Consensus sequence: VHGTAGCTVD

Best Matches for Motif ID 84 (Highest to Lowest)

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 12
Number of overlap: 10
Similarity score: 0.0406295

Alignment:
HWDAGHACRHHVTGTHCCHVMV
-VHGTAGCTVD-----------

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0488771

Alignment:
GGYGCTGTCCATGGTGCTGAA
----------VHGTAGCTVD-

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0490165

Alignment:
DGVBCABTGDWGCGKRRCSR
----VHGTAGCTVD------

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 4
Motif ID: 94
Motif name: ssCGCksCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0498691

Alignment:
BBCGSRGCGVV
-VHGTAGCTVD

Original motif     Consensus sequence: VVCGCKSCGBB Reverse complement motif     Consensus sequence: BBCGSRGCGVV

Dataset #: 4
Motif ID: 72
Motif name: ssCKCwsCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0504682

Alignment:
VBCGSWGCGVB
-VHGTAGCTVD

Original motif     Consensus sequence: BVCGCWSCGBV Reverse complement motif     Consensus sequence: VBCGSWGCGVB

Dataset #: 4
Motif ID: 82
Motif name: rmACAGCAGsr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0522604

Alignment:
DVCTGCTGTVB
DVAGCTACHB-

Original motif     Consensus sequence: VVACAGCAGVD Reverse complement motif     Consensus sequence: DVCTGCTGTVB

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0552268

Alignment:
HTGTTTTTGHH
VHGTAGCTVD-

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 90
Motif name: ssCGsCwsCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0555094

Alignment:
BBGSWGSCGBB
VHGTAGCTVD-

Original motif     Consensus sequence: BBCGSCWSCBB Reverse complement motif     Consensus sequence: BBGSWGSCGBB

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 10
Similarity score: 0.0576734

Alignment:
DHAYAYAYRTGTGTRTDH
--------VHGTAGCTVD

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 4
Motif ID: 73
Motif name: ssCGsCTCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0593588

Alignment:
BBGAGSCGVV
VHGTAGCTVD

Original motif     Consensus sequence: VVCGSCTCBB Reverse complement motif     Consensus sequence: BBGAGSCGVV

Dataset #: 4 Motif ID: 85 Motif name: wtATTTTTAww

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Best Matches for Motif ID 85 (Highest to Lowest)

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0261531

Alignment:
HHCAAAAACAH
DDTAAAAATHD

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 104
Motif name: wtTTWwAAAaw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0418871

Alignment:
HHTTTWAAADD
DDTAAAAATHD

Original motif     Consensus sequence: HHTTTWAAADD Reverse complement motif     Consensus sequence: DDTTTWAAAHH

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0435465

Alignment:
TTTTTTTTTTT
DHATTTTTADD

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0554976

Alignment:
AAACAAAACAA
DDTAAAAATHD

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0619608

Alignment:
BBTCTKTKTCHB
-DHATTTTTADD

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 98
Motif name: wwTAATTAATTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.071067

Alignment:
HDTAATTAATTAHD
DDTAAAAATHD---

Original motif     Consensus sequence: HDTAATTAATTAHD Reverse complement motif     Consensus sequence: DHTAATTAATTADH

Dataset #: 3
Motif ID: 38
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.073779

Alignment:
AKGYYCAAAGRTCA
---DDTAAAAATHD

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0743375

Alignment:
TKKTTTGTTTTTTT
-DHATTTTTADD--

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0781372

Alignment:
HACAYAYACATRHD
---DDTAAAAATHD

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.078844

Alignment:
HDAMACACAKKTKTKTHD
------DHATTTTTADD-

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 4 Motif ID: 86 Motif name: aaCAAAAACaa

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Best Matches for Motif ID 86 (Highest to Lowest)

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.00599723

Alignment:
TTGTTTTGTTT
HTGTTTTTGHH

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0144021

Alignment:
DDTAAAAATHD
HHCAAAAACAH

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0192906

Alignment:
TTTTTTTTTTT
HTGTTTTTGHH

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0258087

Alignment:
DHKATGTKTKTGTD
---HTGTTTTTGHH

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0409728

Alignment:
TGTGTGTGTGTG
-HTGTTTTTGHH

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0416867

Alignment:
BBTCTKTKTCHB
-HTGTTTTTGHH

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0421933

Alignment:
TGTGTGTGTGTG
-HTGTTTTTGHH

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0439692

Alignment:
TGTGTGTGTGTKTG
-HTGTTTTTGHH--

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0504266

Alignment:
CCCCMAAMCAMCCMCMMMCV
------HHCAAAAACAH---

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0546799

Alignment:
AAAAAAACAAARRA
HHCAAAAACAH---

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 4 Motif ID: 87 Motif name: ssCGGsYCGss

Original motif     Consensus sequence: BSCGGSCCGSV Reverse complement motif     Consensus sequence: VSCGGSCCGSB

Best Matches for Motif ID 87 (Highest to Lowest)

Dataset #: 4
Motif ID: 94
Motif name: ssCGCksCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.00942713

Alignment:
BBCGSRGCGVV
BSCGGSCCGSV

Original motif     Consensus sequence: VVCGCKSCGBB Reverse complement motif     Consensus sequence: BBCGSRGCGVV

Dataset #: 4
Motif ID: 78
Motif name: sssCGssGCsss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0201656

Alignment:
SSSCGSSGCSSS
-BSCGGSCCGSV

Original motif     Consensus sequence: SSSCGSSGCSSS Reverse complement motif     Consensus sequence: SSSGCSSCGSSS

Dataset #: 4
Motif ID: 72
Motif name: ssCKCwsCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0329154

Alignment:
BVCGCWSCGBV
BSCGGSCCGSV

Original motif     Consensus sequence: BVCGCWSCGBV Reverse complement motif     Consensus sequence: VBCGSWGCGVB

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0352797

Alignment:
BBCGCCCSGCVV
-BSCGGSCCGSV

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 4
Motif ID: 99
Motif name: sgCTGGCCAGcs
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0445112

Alignment:
VVCTGGCCAGBB
-BSCGGSCCGSV

Original motif     Consensus sequence: BBCTGGCCAGVV Reverse complement motif     Consensus sequence: VVCTGGCCAGBB

Dataset #: 4
Motif ID: 90
Motif name: ssCGsCwsCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.045232

Alignment:
BBCGSCWSCBB
BSCGGSCCGSV

Original motif     Consensus sequence: BBCGSCWSCBB Reverse complement motif     Consensus sequence: BBGSWGSCGBB

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0469326

Alignment:
BBGCTGGCCWGBB
-BSCGGSCCGSV-

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0505053

Alignment:
BBCRCCYCCGBB
BSCGGSCCGSV-

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0554905

Alignment:
SSGGGCGGSGGCGSS
----VSCGGSCCGSB

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 11
Number of overlap: 11
Similarity score: 0.0607093

Alignment:
VRVDGGHACAVDDKGTHCTDWH
----------BSCGGSCCGSV-

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 4 Motif ID: 88 Motif name: ssCrCYyYCGss

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Best Matches for Motif ID 88 (Highest to Lowest)

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0119821

Alignment:
SSGGGCGGSGGCGSS
---BBCGGKGGMGBB

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0239039

Alignment:
BBCGCCCSGCVV
BBCRCCYCCGBB

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 4
Motif ID: 78
Motif name: sssCGssGCsss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0369717

Alignment:
SSSCGSSGCSSS
BBCGGKGGMGBB

Original motif     Consensus sequence: SSSCGSSGCSSS Reverse complement motif     Consensus sequence: SSSGCSSCGSSS

Dataset #: 3
Motif ID: 28
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0460326

Alignment:
VAGGCCBBGGCVBB
--BBCGGKGGMGBB

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 12
Similarity score: 0.0474361

Alignment:
MSGKKRCGCWDCABTGBBCD
----BBCRCCYCCGBB----

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 4
Motif ID: 99
Motif name: sgCTGGCCAGcs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0523473

Alignment:
VVCTGGCCAGBB
BBCGGKGGMGBB

Original motif     Consensus sequence: BBCTGGCCAGVV Reverse complement motif     Consensus sequence: VVCTGGCCAGBB

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0532597

Alignment:
CCCCMAAMCAMCCMCMMMCV
------BBCRCCYCCGBB--

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0537463

Alignment:
BBGCTGGCCWGBB
-BBCGGKGGMGBB

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 4
Motif ID: 103
Motif name: ccCCAGTGCAbr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0600002

Alignment:
HVCCAGTGCABD
BBCGGKGGMGBB

Original motif     Consensus sequence: HVCCAGTGCABD Reverse complement motif     Consensus sequence: DBTGCACTGGVD

Dataset #: 3
Motif ID: 29
Motif name: Zfp423
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0618402

Alignment:
GYRYCCMTKGGYRSC
---BBCGGKGGMGBB

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC

Dataset #: 4 Motif ID: 89 Motif name: ccCCmCACCcc

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Best Matches for Motif ID 89 (Highest to Lowest)

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0286981

Alignment:
SSCGCCSCCGCCCSS
---HBCCMCACCHH-

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 4
Motif ID: 90
Motif name: ssCGsCwsCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0343768

Alignment:
BBCGSCWSCBB
HBCCMCACCHH

Original motif     Consensus sequence: BBCGSCWSCBB Reverse complement motif     Consensus sequence: BBGSWGSCGBB

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0408135

Alignment:
CCCCMAAMCAMCCMCMMMCV
------HBCCMCACCHH---

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 93
Motif name: rrAGGGGGArr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0470142

Alignment:
VVTCCCCCTVV
HBCCMCACCHH

Original motif     Consensus sequence: VVAGGGGGAVV Reverse complement motif     Consensus sequence: VVTCCCCCTVV

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0504854

Alignment:
BBCGGKGGMGBB
-DDGGTGRGGBD

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 11
Similarity score: 0.0523948

Alignment:
TTCAGCACCATGGACAGCKCC
HBCCMCACCHH----------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 77
Motif name: ssGCTswGCCms
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0560955

Alignment:
BDGGCTSAGCBV
HBCCMCACCHH-

Original motif     Consensus sequence: VBGCTSAGCCHB Reverse complement motif     Consensus sequence: BDGGCTSAGCBV

Dataset #: 3
Motif ID: 44
Motif name: Egr1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0561812

Alignment:
HGCGTGGGCGK
DDGGTGRGGBD

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0572567

Alignment:
BBCGCCCSGCVV
HBCCMCACCHH-

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 3
Motif ID: 51
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0585334

Alignment:
TGYCAGGGGGCR
-DDGGTGRGGBD

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA

Dataset #: 4 Motif ID: 90 Motif name: ssCGsCwsCss

Original motif     Consensus sequence: BBCGSCWSCBB Reverse complement motif     Consensus sequence: BBGSWGSCGBB

Best Matches for Motif ID 90 (Highest to Lowest)

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0236246

Alignment:
BBCGGKGGMGBB
-BBGSWGSCGBB

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4
Motif ID: 89
Motif name: ccCCmCACCcc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0238413

Alignment:
DDGGTGRGGBD
BBGSWGSCGBB

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Dataset #: 4
Motif ID: 78
Motif name: sssCGssGCsss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0239515

Alignment:
SSSCGSSGCSSS
-BBCGSCWSCBB

Original motif     Consensus sequence: SSSCGSSGCSSS Reverse complement motif     Consensus sequence: SSSGCSSCGSSS

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0274779

Alignment:
SSGGGCGGSGGCGSS
----BBGSWGSCGBB

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 4
Motif ID: 82
Motif name: rmACAGCAGsr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0336118

Alignment:
DVCTGCTGTVB
BBCGSCWSCBB

Original motif     Consensus sequence: VVACAGCAGVD Reverse complement motif     Consensus sequence: DVCTGCTGTVB

Dataset #: 4
Motif ID: 94
Motif name: ssCGCksCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0337912

Alignment:
VVCGCKSCGBB
BBGSWGSCGBB

Original motif     Consensus sequence: VVCGCKSCGBB Reverse complement motif     Consensus sequence: BBCGSRGCGVV

Dataset #: 4
Motif ID: 87
Motif name: ssCGGsYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0346171

Alignment:
BSCGGSCCGSV
BBCGSCWSCBB

Original motif     Consensus sequence: BSCGGSCCGSV Reverse complement motif     Consensus sequence: VSCGGSCCGSB

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0353683

Alignment:
BBGCTGGCCWGBB
BBGSWGSCGBB--

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0362688

Alignment:
BBCGCCCSGCVV
-BBCGSCWSCBB

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 4
Motif ID: 72
Motif name: ssCKCwsCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0409983

Alignment:
VBCGSWGCGVB
BBCGSCWSCBB

Original motif     Consensus sequence: BVCGCWSCGBV Reverse complement motif     Consensus sequence: VBCGSWGCGVB

Dataset #: 4 Motif ID: 91 Motif name: ssCGCCsCCrCCCss

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Best Matches for Motif ID 91 (Highest to Lowest)

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.059922

Alignment:
HWDAGHACRHHVTGTHCCHVMV
-----SSCGCCSCCGCCCSS--

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 15
Similarity score: 0.0619876

Alignment:
CCCCMAAMCAMCCMCMMMCV
SSCGCCSCCGCCCSS-----

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0630737

Alignment:
MSGKKRCGCWDCABTGBBCD
-SSCGCCSCCGCCCSS----

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0682659

Alignment:
BAGGYCABHBTGACCKHV
SSCGCCSCCGCCCSS---

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 15
Similarity score: 0.0700979

Alignment:
VDBHMAGGTCACCCTGACCY
--SSGGGCGGSGGCGSS---

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 28
Motif name: Zfx
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.537296

Alignment:
BBVGCCBVGGCCTV-
SSCGCCSCCGCCCSS

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Dataset #: 3
Motif ID: 37
Motif name: PLAG1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.564943

Alignment:
-GGGGCCCAAGGGGG
SSGGGCGGSGGCGSS

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.568444

Alignment:
TGRCCTKTGHCCKAB-
-SSCGCCSCCGCCCSS

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 64
Motif name: Tcfcp2l1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.569229

Alignment:
-CCAGYYHVADCCRG
SSCGCCSCCGCCCSS

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 1.06715

Alignment:
BBCWGGCCAGCBB--
SSCGCCSCCGCCCSS

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 4 Motif ID: 92 Motif name: tyTCTkTkTCyy

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Best Matches for Motif ID 92 (Highest to Lowest)

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0337934

Alignment:
HACAYAYACATRHD
--VHGARAYAGAVV

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0374053

Alignment:
TGTGTGTGTGTG
BBTCTKTKTCHB

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 77
Motif name: ssGCTswGCCms
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0380798

Alignment:
VBGCTSAGCCHB
BBTCTKTKTCHB

Original motif     Consensus sequence: VBGCTSAGCCHB Reverse complement motif     Consensus sequence: BDGGCTSAGCBV

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0383981

Alignment:
AAAAAAACAAARRA
-VHGARAYAGAVV-

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0399569

Alignment:
BTRGGDCARAGGKCA
-VHGARAYAGAVV--

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0403405

Alignment:
CACACACACACA
VHGARAYAGAVV

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 3
Motif ID: 50
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0411089

Alignment:
RGGBCAAAGKYCA
-VHGARAYAGAVV

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 4
Motif ID: 100
Motif name: wrTGTATACAyw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0525228

Alignment:
HDTGTATACAHD
VHGARAYAGAVV

Original motif     Consensus sequence: HDTGTATACAHD Reverse complement motif     Consensus sequence: DHTGTATACADH

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0539512

Alignment:
CAYACACACACACA
VHGARAYAGAVV--

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 12
Similarity score: 0.057338

Alignment:
HWDAGHACRHHVTGTHCCHVMV
--------BBTCTKTKTCHB--

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 4 Motif ID: 93 Motif name: rrAGGGGGArr

Original motif     Consensus sequence: VVAGGGGGAVV Reverse complement motif     Consensus sequence: VVTCCCCCTVV

Best Matches for Motif ID 93 (Highest to Lowest)

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0426359

Alignment:
BBCRCCYCCGBB
VVTCCCCCTVV-

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4
Motif ID: 89
Motif name: ccCCmCACCcc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0451601

Alignment:
DDGGTGRGGBD
VVAGGGGGAVV

Original motif     Consensus sequence: HBCCMCACCHH Reverse complement motif     Consensus sequence: DDGGTGRGGBD

Dataset #: 3
Motif ID: 51
Motif name: INSM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0507544

Alignment:
MGCCCCCTGMCA
VVTCCCCCTVV-

Original motif     Consensus sequence: TGYCAGGGGGCR Reverse complement motif     Consensus sequence: MGCCCCCTGMCA

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0518016

Alignment:
CCCCMAAMCAMCCMCMMMCV
--VVTCCCCCTVV-------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.057219

Alignment:
SSCGCCSCCGCCCSS
---VVTCCCCCTVV-

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 3
Motif ID: 44
Motif name: Egr1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.05952

Alignment:
YCGCCCACGCH
VVTCCCCCTVV

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0648994

Alignment:
VVGCSGGGCGBB
-VVAGGGGGAVV

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0693142

Alignment:
BBTCTKTKTCHB
-VVTCCCCCTVV

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 11
Similarity score: 0.0697139

Alignment:
DGVBCABTGDWGCGKRRCSR
--------VVAGGGGGAVV-

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0713568

Alignment:
VDBHMAGGTCACCCTGACCY
--VVAGGGGGAVV-------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4 Motif ID: 94 Motif name: ssCGCksCGss

Original motif     Consensus sequence: VVCGCKSCGBB Reverse complement motif     Consensus sequence: BBCGSRGCGVV

Best Matches for Motif ID 94 (Highest to Lowest)

Dataset #: 4
Motif ID: 72
Motif name: ssCKCwsCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0

Alignment:
BVCGCWSCGBV
VVCGCKSCGBB

Original motif     Consensus sequence: BVCGCWSCGBV Reverse complement motif     Consensus sequence: VBCGSWGCGVB

Dataset #: 4
Motif ID: 78
Motif name: sssCGssGCsss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0076298

Alignment:
SSSGCSSCGSSS
-VVCGCKSCGBB

Original motif     Consensus sequence: SSSCGSSGCSSS Reverse complement motif     Consensus sequence: SSSGCSSCGSSS

Dataset #: 4
Motif ID: 87
Motif name: ssCGGsYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0169077

Alignment:
VSCGGSCCGSB
VVCGCKSCGBB

Original motif     Consensus sequence: BSCGGSCCGSV Reverse complement motif     Consensus sequence: VSCGGSCCGSB

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0276374

Alignment:
BBCGCCCSGCVV
-VVCGCKSCGBB

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 4
Motif ID: 77
Motif name: ssGCTswGCCms
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0456402

Alignment:
BDGGCTSAGCBV
-VVCGCKSCGBB

Original motif     Consensus sequence: VBGCTSAGCCHB Reverse complement motif     Consensus sequence: BDGGCTSAGCBV

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0497808

Alignment:
BBCRCCYCCGBB
VVCGCKSCGBB-

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 4
Motif ID: 91
Motif name: ssCGCCsCCrCCCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0512927

Alignment:
SSGGGCGGSGGCGSS
----BBCGSRGCGVV

Original motif     Consensus sequence: SSCGCCSCCGCCCSS Reverse complement motif     Consensus sequence: SSGGGCGGSGGCGSS

Dataset #: 4
Motif ID: 90
Motif name: ssCGsCwsCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0518867

Alignment:
BBCGSCWSCBB
BBCGSRGCGVV

Original motif     Consensus sequence: BBCGSCWSCBB Reverse complement motif     Consensus sequence: BBGSWGSCGBB

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0612549

Alignment:
MSGKKRCGCWDCABTGBBCD
-----VVCGCKSCGBB----

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 28
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0677552

Alignment:
BBVGCCBVGGCCTV
---BBCGSRGCGVV

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB

Dataset #: 4 Motif ID: 95 Motif name: CACACACACACA

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Best Matches for Motif ID 95 (Highest to Lowest)

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0

Alignment:
CACACACACACA
CACACACACACA

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0205118

Alignment:
TGTGTGTGTGTKTG
TGTGTGTGTGTG--

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 2
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0385589

Alignment:
CACACAVRCACACA
--CACACACACACA

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0642933

Alignment:
HACAYAYACATRHD
CACACACACACA--

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 12
Similarity score: 0.0802145

Alignment:
DHAYAYAYRTGTGTRTDH
-----TGTGTGTGTGTG-

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0817886

Alignment:
VHGARAYAGAVV
CACACACACACA

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0838132

Alignment:
HVCATGCATGCABD
CACACACACACA--

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0893611

Alignment:
CCCCMAAMCAMCCMCMMMCV
------CACACACACACA--

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.098214

Alignment:
AAAAAAACAAARRA
-CACACACACACA-

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 4
Motif ID: 96
Motif name: yrTGTGCACAyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.100025

Alignment:
BVTGTGCACABV
CACACACACACA

Original motif     Consensus sequence: BVTGTGCACABV Reverse complement motif     Consensus sequence: BBTGTGCACAVV

Dataset #: 4 Motif ID: 96 Motif name: yrTGTGCACAyr

Original motif     Consensus sequence: BVTGTGCACABV Reverse complement motif     Consensus sequence: BBTGTGCACAVV

Best Matches for Motif ID 96 (Highest to Lowest)

Dataset #: 4
Motif ID: 100
Motif name: wrTGTATACAyw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0122182

Alignment:
HDTGTATACAHD
BVTGTGCACABV

Original motif     Consensus sequence: HDTGTATACAHD Reverse complement motif     Consensus sequence: DHTGTATACADH

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0509564

Alignment:
HWDAGHACRHHVTGTHCCHVMV
BBTGTGCACAVV----------

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0535005

Alignment:
HACAYAYACATRHD
BVTGTGCACABV--

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0598757

Alignment:
HVCATGCATGCABD
BVTGTGCACABV--

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0627131

Alignment:
TGRCCTKTGHCCKAB
---BBTGTGCACAVV

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 4
Motif ID: 103
Motif name: ccCCAGTGCAbr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.065528

Alignment:
HVCCAGTGCABD
BVTGTGCACABV

Original motif     Consensus sequence: HVCCAGTGCABD Reverse complement motif     Consensus sequence: DBTGCACTGGVD

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0658006

Alignment:
CACACACACACA
BVTGTGCACABV

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0678445

Alignment:
CACACACACACA
BVTGTGCACABV

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 12
Similarity score: 0.0683806

Alignment:
MGGTCAGGGTGACCTRDBHV
-BVTGTGCACABV-------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0730906

Alignment:
BBCWGGCCAGCBB
-BVTGTGCACABV

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 4 Motif ID: 97 Motif name: ryayAyAyrtGTRTrTry

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Best Matches for Motif ID 97 (Highest to Lowest)

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.0567857

Alignment:
VRVDGGHACAVDDKGTHCTDWH
---HDAMACACAKKTKTKTHD-

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 0.0640097

Alignment:
DGVBCABTGDWGCGKRRCSR
-DHAYAYAYRTGTGTRTDH-

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 3
Motif ID: 29
Motif name: Zfp423
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 1.57612

Alignment:
GSMMCCYARGGKKKC---
HDAMACACAKKTKTKTHD

Original motif     Consensus sequence: GSMMCCYARGGKKKC Reverse complement motif     Consensus sequence: GYRYCCMTKGGYRSC

Dataset #: 3
Motif ID: 38
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 2.07113

Alignment:
AKGYYCAAAGRTCA----
HDAMACACAKKTKTKTHD

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 2.07717

Alignment:
----TGRCCTKTGHCCKAB
HDAMACACAKKTKTKTHD-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 2.52342

Alignment:
HACAYAYACATRHD-----
-DHAYAYAYRTGTGTRTDH

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 2.5527

Alignment:
-----HVCATGCATGCABD
DHAYAYAYRTGTGTRTDH-

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 2.55729

Alignment:
-----CAYACACACACACA
HDAMACACAKKTKTKTHD-

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 2
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 2.56171

Alignment:
-----CACACAVRCACACA
HDAMACACAKKTKTKTHD-

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Dataset #: 3
Motif ID: 34
Motif name: RREB1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 13
Similarity score: 2.57744

Alignment:
-----CCCCMAAMCAMCCMCMMMCV
HDAMACACAKKTKTKTHD-------

Original motif     Consensus sequence: CCCCMAAMCAMCCMCMMMCV Reverse complement motif     Consensus sequence: BGRRRGRGGRTGRTTYGGGG

Dataset #: 4 Motif ID: 98 Motif name: wwTAATTAATTAww

Original motif     Consensus sequence: HDTAATTAATTAHD Reverse complement motif     Consensus sequence: DHTAATTAATTADH

Best Matches for Motif ID 98 (Highest to Lowest)

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0386482

Alignment:
HACAYAYACATRHD
HDTAATTAATTAHD

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0492995

Alignment:
DVTGCATGCATGBH
DHTAATTAATTADH

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.540688

Alignment:
AAAAAAACAAARRA-
-DHTAATTAATTADH

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 4
Motif ID: 100
Motif name: wrTGTATACAyw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 1.04123

Alignment:
HDTGTATACAHD--
HDTAATTAATTAHD

Original motif     Consensus sequence: HDTGTATACAHD Reverse complement motif     Consensus sequence: DHTGTATACADH

Dataset #: 4
Motif ID: 104
Motif name: wtTTWwAAAaw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 1.53128

Alignment:
DDTTTWAAAHH---
HDTAATTAATTAHD

Original motif     Consensus sequence: HHTTTWAAADD Reverse complement motif     Consensus sequence: DDTTTWAAAHH

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 1.53238

Alignment:
DHATTTTTADD---
DHTAATTAATTADH

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 1.54293

Alignment:
---AAAAAAAAAAA
HDTAATTAATTAHD

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 4
Motif ID: 83
Motif name: wwTAAAwAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 2

Alignment:
----DDTAAAWAHH
HDTAATTAATTAHD

Original motif     Consensus sequence: DDTAAAWAHH Reverse complement motif     Consensus sequence: HHTWTTTADD

Dataset #: 4
Motif ID: 81
Motif name: wwTAAwAAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 2.00262

Alignment:
----DDTAAWAAHH
HDTAATTAATTAHD

Original motif     Consensus sequence: DDTAAWAAHH Reverse complement motif     Consensus sequence: HHTTWTTADD

Dataset #: 4
Motif ID: 74
Motif name: twTACATAvw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 2.02175

Alignment:
DBTATGTAHH----
HDTAATTAATTAHD

Original motif     Consensus sequence: HHTACATAVD Reverse complement motif     Consensus sequence: DBTATGTAHH

Dataset #: 4 Motif ID: 99 Motif name: sgCTGGCCAGcs

Original motif     Consensus sequence: BBCTGGCCAGVV Reverse complement motif     Consensus sequence: VVCTGGCCAGBB

Best Matches for Motif ID 99 (Highest to Lowest)

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0

Alignment:
BBGCTGGCCWGBB
-VVCTGGCCAGBB

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 12
Similarity score: 0.0561158

Alignment:
MGGTCAGGGTGACCTRDBHV
------VVCTGGCCAGBB--

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 12
Similarity score: 0.0580329

Alignment:
TTCAGCACCATGGACAGCKCC
-------BBCTGGCCAGVV--

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0691833

Alignment:
BBCGGKGGMGBB
VVCTGGCCAGBB

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 12
Similarity score: 0.0809423

Alignment:
HWDAGHACRHHVTGTHCCHVMV
---------BBCTGGCCAGVV-

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 4
Motif ID: 78
Motif name: sssCGssGCsss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0853247

Alignment:
SSSCGSSGCSSS
BBCTGGCCAGVV

Original motif     Consensus sequence: SSSCGSSGCSSS Reverse complement motif     Consensus sequence: SSSGCSSCGSSS

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0865201

Alignment:
MSGKKRCGCWDCABTGBBCD
------VVCTGGCCAGBB--

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0875502

Alignment:
VVGCSGGGCGBB
VVCTGGCCAGBB

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0885607

Alignment:
DVTGCATGCATGBH
--BBCTGGCCAGVV

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 4
Motif ID: 87
Motif name: ssCGGsYCGss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.555159

Alignment:
-VSCGGSCCGSB
BBCTGGCCAGVV

Original motif     Consensus sequence: BSCGGSCCGSV Reverse complement motif     Consensus sequence: VSCGGSCCGSB

Dataset #: 4 Motif ID: 100 Motif name: wrTGTATACAyw

Original motif     Consensus sequence: HDTGTATACAHD Reverse complement motif     Consensus sequence: DHTGTATACADH

Best Matches for Motif ID 100 (Highest to Lowest)

Dataset #: 4
Motif ID: 96
Motif name: yrTGTGCACAyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0107886

Alignment:
BVTGTGCACABV
HDTGTATACAHD

Original motif     Consensus sequence: BVTGTGCACABV Reverse complement motif     Consensus sequence: BBTGTGCACAVV

Dataset #: 4
Motif ID: 101
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.026179

Alignment:
HVCATGCATGCABD
--HDTGTATACAHD

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0432442

Alignment:
HACAYAYACATRHD
HDTGTATACAHD--

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 12
Similarity score: 0.0557046

Alignment:
VRVDGGHACAVDDKGTHCTDWH
--DHTGTATACADH--------

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0612523

Alignment:
BBTCTKTKTCHB
DHTGTATACADH

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 103
Motif name: ccCCAGTGCAbr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0639471

Alignment:
HVCCAGTGCABD
HDTGTATACAHD

Original motif     Consensus sequence: HVCCAGTGCABD Reverse complement motif     Consensus sequence: DBTGCACTGGVD

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0666592

Alignment:
CACACACACACA
HDTGTATACAHD

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 98
Motif name: wwTAATTAATTAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0670186

Alignment:
HDTAATTAATTAHD
HDTGTATACAHD--

Original motif     Consensus sequence: HDTAATTAATTAHD Reverse complement motif     Consensus sequence: DHTAATTAATTADH

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 12
Similarity score: 0.0681793

Alignment:
DHAYAYAYRTGTGTRTDH
-----HDTGTATACAHD-

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0704332

Alignment:
GGYGCTGTCCATGGTGCTGAA
--------HDTGTATACAHD-

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4 Motif ID: 101 Motif name: AAAAAAAAAAA

Original motif     Consensus sequence: HVCATGCATGCABD Reverse complement motif     Consensus sequence: DVTGCATGCATGBH

Best Matches for Motif ID 101 (Highest to Lowest)

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0415454

Alignment:
HACAYAYACATRHD
HVCATGCATGCABD

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0460165

Alignment:
DHAYAYAYRTGTGTRTDH
-HVCATGCATGCABD---

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 14
Similarity score: 0.0566797

Alignment:
MSGKKRCGCWDCABTGBBCD
----DVTGCATGCATGBH--

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 2
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0676844

Alignment:
CAYACACACACACA
HVCATGCATGCABD

Original motif     Consensus sequence: CAYACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTKTG

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0683653

Alignment:
VDBHMAGGTCACCCTGACCY
--DVTGCATGCATGBH----

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 2
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0701592

Alignment:
CACACAVRCACACA
HVCATGCATGCABD

Original motif     Consensus sequence: CACACAVRCACACA Reverse complement motif     Consensus sequence: TGTGTGKVTGTGTG

Dataset #: 3
Motif ID: 46
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 14
Similarity score: 0.0703872

Alignment:
BAGGYCABHBTGACCKHV
----DVTGCATGCATGBH

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 4
Motif ID: 98
Motif name: wwTAATTAATTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0704123

Alignment:
DHTAATTAATTADH
DVTGCATGCATGBH

Original motif     Consensus sequence: HDTAATTAATTAHD Reverse complement motif     Consensus sequence: DHTAATTAATTADH

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.540961

Alignment:
-BBGCTGGCCWGBB
DVTGCATGCATGBH

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 4
Motif ID: 100
Motif name: wrTGTATACAyw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 1.0215

Alignment:
--HDTGTATACAHD
HVCATGCATGCABD

Original motif     Consensus sequence: HDTGTATACAHD Reverse complement motif     Consensus sequence: DHTGTATACADH

Dataset #: 4 Motif ID: 102 Motif name: AAAAAAAAAAA

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Best Matches for Motif ID 102 (Highest to Lowest)

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0385663

Alignment:
AAAAAAACAAARRA
--AAAAAAAAAAA-

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0415349

Alignment:
AAACAAAACAA
AAAAAAAAAAA

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0486936

Alignment:
HTGTTTTTGHH
TTTTTTTTTTT

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0611986

Alignment:
DDTAAAAATHD
AAAAAAAAAAA

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 92
Motif name: tyTCTkTkTCyy
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.071295

Alignment:
VHGARAYAGAVV
AAAAAAAAAAA-

Original motif     Consensus sequence: BBTCTKTKTCHB Reverse complement motif     Consensus sequence: VHGARAYAGAVV

Dataset #: 4
Motif ID: 95
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0828525

Alignment:
TGTGTGTGTGTG
TTTTTTTTTTT-

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 79
Motif name: CACACACACACA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0835838

Alignment:
TGTGTGTGTGTG
TTTTTTTTTTT-

Original motif     Consensus sequence: CACACACACACA Reverse complement motif     Consensus sequence: TGTGTGTGTGTG

Dataset #: 4
Motif ID: 75
Motif name: yayAyAyACATrya
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0851246

Alignment:
DHKATGTKTKTGTD
--TTTTTTTTTTT-

Original motif     Consensus sequence: HACAYAYACATRHD Reverse complement motif     Consensus sequence: DHKATGTKTKTGTD

Dataset #: 4
Motif ID: 104
Motif name: wtTTWwAAAaw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0884049

Alignment:
HHTTTWAAADD
AAAAAAAAAAA

Original motif     Consensus sequence: HHTTTWAAADD Reverse complement motif     Consensus sequence: DDTTTWAAAHH

Dataset #: 4
Motif ID: 97
Motif name: ryayAyAyrtGTRTrTry
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 11
Similarity score: 0.097006

Alignment:
HDAMACACAKKTKTKTHD
-------TTTTTTTTTTT

Original motif     Consensus sequence: DHAYAYAYRTGTGTRTDH Reverse complement motif     Consensus sequence: HDAMACACAKKTKTKTHD

Dataset #: 4 Motif ID: 103 Motif name: ccCCAGTGCAbr

Original motif     Consensus sequence: HVCCAGTGCABD Reverse complement motif     Consensus sequence: DBTGCACTGGVD

Best Matches for Motif ID 103 (Highest to Lowest)

Dataset #: 3
Motif ID: 45
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0330443

Alignment:
VDBHMAGGTCACCCTGACCY
-HVCCAGTGCABD-------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0429385

Alignment:
VRVDGGHACAVDDKGTHCTDWH
--DBTGCACTGGVD--------

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 4
Motif ID: 77
Motif name: ssGCTswGCCms
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.045363

Alignment:
BDGGCTSAGCBV
DBTGCACTGGVD

Original motif     Consensus sequence: VBGCTSAGCCHB Reverse complement motif     Consensus sequence: BDGGCTSAGCBV

Dataset #: 4
Motif ID: 67
Motif name: ssGMsGRGCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0492776

Alignment:
BBCGCCCSGCVV
DBTGCACTGGVD

Original motif     Consensus sequence: VVGCSGGGCGBB Reverse complement motif     Consensus sequence: BBCGCCCSGCVV

Dataset #: 4
Motif ID: 80
Motif name: ssCwGGCCwGCss
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0514849

Alignment:
BBGCTGGCCWGBB
-HVCCAGTGCABD

Original motif     Consensus sequence: BBCWGGCCAGCBB Reverse complement motif     Consensus sequence: BBGCTGGCCWGBB

Dataset #: 4
Motif ID: 78
Motif name: sssCGssGCsss
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0547614

Alignment:
SSSCGSSGCSSS
HVCCAGTGCABD

Original motif     Consensus sequence: SSSCGSSGCSSS Reverse complement motif     Consensus sequence: SSSGCSSCGSSS

Dataset #: 3
Motif ID: 36
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0564387

Alignment:
BTRGGDCARAGGKCA
-DBTGCACTGGVD--

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 35
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0567619

Alignment:
TTCAGCACCATGGACAGCKCC
-DBTGCACTGGVD--------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 88
Motif name: ssCrCYyYCGss
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.058391

Alignment:
BBCRCCYCCGBB
DBTGCACTGGVD

Original motif     Consensus sequence: BBCRCCYCCGBB Reverse complement motif     Consensus sequence: BBCGGKGGMGBB

Dataset #: 3
Motif ID: 61
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 12
Similarity score: 0.0587621

Alignment:
MSGKKRCGCWDCABTGBBCD
--DBTGCACTGGVD------

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD

Dataset #: 4 Motif ID: 104 Motif name: wtTTWwAAAaw

Original motif     Consensus sequence: HHTTTWAAADD Reverse complement motif     Consensus sequence: DDTTTWAAAHH

Best Matches for Motif ID 104 (Highest to Lowest)

Dataset #: 4
Motif ID: 85
Motif name: wtATTTTTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0593833

Alignment:
DHATTTTTADD
DDTTTWAAAHH

Original motif     Consensus sequence: DHATTTTTADD Reverse complement motif     Consensus sequence: DDTAAAAATHD

Dataset #: 4
Motif ID: 100
Motif name: wrTGTATACAyw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0766819

Alignment:
HDTGTATACAHD
-DDTTTWAAAHH

Original motif     Consensus sequence: HDTGTATACAHD Reverse complement motif     Consensus sequence: DHTGTATACADH

Dataset #: 4
Motif ID: 98
Motif name: wwTAATTAATTAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0874663

Alignment:
HDTAATTAATTAHD
---DDTTTWAAAHH

Original motif     Consensus sequence: HDTAATTAATTAHD Reverse complement motif     Consensus sequence: DHTAATTAATTADH

Dataset #: 4
Motif ID: 102
Motif name: AAAAAAAAAAA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0882491

Alignment:
AAAAAAAAAAA
HHTTTWAAADD

Original motif     Consensus sequence: AAAAAAAAAAA Reverse complement motif     Consensus sequence: TTTTTTTTTTT

Dataset #: 4
Motif ID: 86
Motif name: aaCAAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0940379

Alignment:
HHCAAAAACAH
HHTTTWAAADD

Original motif     Consensus sequence: HHCAAAAACAH Reverse complement motif     Consensus sequence: HTGTTTTTGHH

Dataset #: 4
Motif ID: 96
Motif name: yrTGTGCACAyr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0947707

Alignment:
BBTGTGCACAVV
DDTTTWAAAHH-

Original motif     Consensus sequence: BVTGTGCACABV Reverse complement motif     Consensus sequence: BBTGTGCACAVV

Dataset #: 2
Motif ID: 26
Motif name: Motif 26
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.095526

Alignment:
AAAAAAACAAARRA
-HHTTTWAAADD--

Original motif     Consensus sequence: TKKTTTGTTTTTTT Reverse complement motif     Consensus sequence: AAAAAAACAAARRA

Dataset #: 3
Motif ID: 40
Motif name: Ar
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.100218

Alignment:
VRVDGGHACAVDDKGTHCTDWH
-----------DDTTTWAAAHH

Original motif     Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Reverse complement motif     Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Dataset #: 4
Motif ID: 69
Motif name: aaACAAAACaa
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.100239

Alignment:
AAACAAAACAA
HHTTTWAAADD

Original motif     Consensus sequence: AAACAAAACAA Reverse complement motif     Consensus sequence: TTGTTTTGTTT

Dataset #: 3
Motif ID: 38
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.100766

Alignment:
TGAMCTTTGMMCYT
DDTTTWAAAHH---

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Results created by MOTIFSIM on 11-20-2016 14:49:39
Runtime: 837.987 seconds

MOTIFSIM is written by Ngoc Tam L. Tran
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