**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.1 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 4 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Phylogenetic tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # DREME_DM721.txt 16 1 MEME-ChIP_DM721.txt 11 2 PScanChIP_DM721.txt 37 3 RSAT_peak-motifs_DM721.txt 40 4 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** *************************************************************** Combined Motifs for Top Best Match Motif ID 1 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 AAAAAAAAAAA Original Motif Original Motif AAAAWAAA AAAAAAAAAAA AAAAAAAAAAA Direction: Backward Position #: 2 Overlap #: 8 Alignment: --AAAAWAAA- AAAAAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Original Motif AAAAAAAAAAA AAAASAAA AAAAMAAAAAA Direction: Forward Position #: 1 Overlap #: 8 Alignment: AAAAAAAAAAA AAAASAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif AAAAMAAAAAA WWAAAAAAWH AAAAAAAAWAA Direction: Forward Position #: 1 Overlap #: 10 Alignment: AAAAMAAAAAA WWAAAAAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Reverse Complement Original Motif TTWTTTTTTTT TKKTTTGTTTTTTT TTTTTTKTTTTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTWTTTTTTTT--- TKKTTTGTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAwAAww Original Motif Reverse Complement TTTTTTKTTTTTTT HHTTWTTADD TDTTTTTWTTTTTT Direction: Forward Position #: 1 Overlap #: 10 Alignment: TTTTTTKTTTTTTT HHTTWTTADD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Original Motif Reverse Complement TDTTTTTWTTTTTT HTGTTTTTGHH THKTTTTTKTTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TDTTTTTWTTTTTT HTGTTTTTGHH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Original Motif Reverse Complement THKTTTTTKTTTTT HHTWTTTADD HHTTTTTWDDTTTT Direction: Forward Position #: 1 Overlap #: 10 Alignment: THKTTTTTKTTTTT HHTWTTTADD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wtATTTTTAww Combined Motif Reverse Complement Reverse Complement AAAADHWAAAAAHH DDTAAAAATHD AAADTAAAAAWAHH Direction: Forward Position #: 3 Overlap #: 11 Alignment: AAAADHWAAAAAHH --DDTAAAAATHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Reverse Complement Reverse Complement HHTWTTTTTADTTT TTGTTTTGTTT THGTTTTKTWTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHTWTTTTTADTTT TTGTTTTGTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Original Motif THGTTTTKTWTTTT BBTCTKTKTCHB BHTYTTTKTCHHTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: THGTTTTKTWTTTT BBTCTKTKTCHB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Original Motif Reverse Complement BHTYTTTKTCHHTT DHKATGTKTKTGTD BHKMTKTKTBTKTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: BHTYTTTKTCHHTT DHKATGTKTKTGTD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 2 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 CACACACACACA Original Motif Original Motif CACACACA CACACACACACA CACACACACACA Direction: Forward Position #: 3 Overlap #: 8 Alignment: --CACACACA-- CACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Reverse Complement Reverse Complement TGTGTGTGTGTG TGTGTGTGTGTG TGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGTG TGTGTGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Reverse Complement TGTGTGTGTGTG TGTGTGTGTGTKTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGTG-- TGTGTGTGTGTKTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Reverse Complement Original Motif CACACACACACACA CACACAVRCACACA CACACACACACACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACACACACACA CACACAVRCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Reverse Complement Original Motif TGTGTGTGTGTGTG DHAYAYAYRTGTGTRTDH DTRTRYRTRTGTGTGTDH Direction: Forward Position #: 2 Overlap #: 14 Alignment: -TGTGTGTGTGTGTG--- DHAYAYAYRTGTGTRTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Reverse Complement Original Motif HDACACACAMAKMMAMAD HACAYAYACATRHD HVBACACACAYRBAMAMAD Direction: Forward Position #: 2 Overlap #: 13 Alignment: -HDACACACAMAKMMAMAD HACAYAYACATRHD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Original Motif Original Motif HVBACACACAYRBAMAMAD HHCAAAAACAH HHCAMAMACAHRBAMAMAD Direction: Forward Position #: 1 Overlap #: 11 Alignment: HVBACACACAYRBAMAMAD HHCAAAAACAH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Original Motif Original Motif HHCAMAMACAHRBAMAMAD HHTACATAVD HHYACATACAHRBAMAMAD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHCAMAMACAHRBAMAMAD HHTACATAVD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Original Motif HHYACATACAHRBAMAMAD CCCCMAAMCAMCCMCMMMCV MCYMMAWACAMMHMCMMMBV Direction: Forward Position #: 1 Overlap #: 19 Alignment: HHYACATACAHRBAMAMAD- CCCCMAAMCAMCCMCMMMCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Reverse Complement BBYRYGYDRRTGTWTRRKGR DVTGCATGCATGBH BVTGCRTGSATGTHTRRKGR Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBYRYGYDRRTGTWTRRKGR DVTGCATGCATGBH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 3 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 wwTAAAwAww Reverse Complement Reverse Complement TYTATWT HHTWTTTADD THTATTTADD Direction: Forward Position #: 1 Overlap #: 7 Alignment: TYTATWT--- HHTWTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Original Motif Reverse Complement THTATTTADD TTTWTTTT TTTWTTTWDD Direction: Forward Position #: 1 Overlap #: 8 Alignment: THTATTTADD TTTWTTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Original Motif Reverse Complement TTTWTTTWDD DBTATGTAHH THTATKTAHH Direction: Forward Position #: 1 Overlap #: 10 Alignment: TTTWTTTWDD DBTATGTAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Reverse Complement THTATKTAHH TTTSTTTT TTTVTTTWHH Direction: Forward Position #: 1 Overlap #: 8 Alignment: THTATKTAHH TTTSTTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Original Motif HHWAAABAAA AAAAAAAAAAA DAAAAAAAAAA Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHWAAABAAA- AAAAAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Reverse Complement DAAAAAAAAAA VHGARAYAGAVV HHRAAAHARAAV Direction: Forward Position #: 1 Overlap #: 11 Alignment: DAAAAAAAAAA- VHGARAYAGAVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif HHRAAAHARAAV WWAAAAAAWH DWAAAAAADAAV Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHRAAAHARAAV WWAAAAAAWH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Reverse Complement Reverse Complement BTTDTTTTTTWD TTGTTTTGTTT BTKTTTTKTTTD Direction: Forward Position #: 1 Overlap #: 11 Alignment: BTTDTTTTTTWD TTGTTTTGTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Reverse Complement Reverse Complement DAAAYAAAAYAV AAAAAAACAAARRA DAAAHAAAAYAAARRA Direction: Forward Position #: 3 Overlap #: 10 Alignment: DAAAYAAAAYAV---- --AAAAAAACAAARRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Original Motif DAAAHAAAAYAAARRA CACACACACACA HAMACAMAMMMAARRA Direction: Forward Position #: 1 Overlap #: 12 Alignment: DAAAHAAAAYAAARRA CACACACACACA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 4 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 EWSR1-FLI1 Reverse Complement Original Motif GGAGGVMG GGAAGGAAGGAAGGAAGG GAAGGGRAGGAAGGGAAG Direction: Backward Position #: 6 Overlap #: 8 Alignment: -----GGAGGVMG----- GGAAGGAAGGAAGGAAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Original Motif Reverse Complement GAAGGGRAGGAAGGGAAG GGGGGYGGGG GRRGGGGRGGAAGGGAAG Direction: Forward Position #: 1 Overlap #: 10 Alignment: GAAGGGRAGGAAGGGAAG GGGGGYGGGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rrAGGGGGArr Original Motif Original Motif GRRGGGGRGGAAGGGAAG VVAGGGGGAVV GRAGGGGGRGVAGGGAAG Direction: Forward Position #: 1 Overlap #: 11 Alignment: GRRGGGGRGGAAGGGAAG VVAGGGGGAVV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Original Motif Reverse Complement GRAGGGGGRGVAGGGAAG SSGGGCGGSGGCGSS GVRGGBGGRGGMGGGAAG Direction: Forward Position #: 1 Overlap #: 15 Alignment: GRAGGGGGRGVAGGGAAG SSGGGCGGSGGCGSS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Original Motif GVRGGBGGRGGMGGGAAG DGGGYGKGGC DGGGBGGGGSGMGGGAAG Direction: Forward Position #: 1 Overlap #: 10 Alignment: GVRGGBGGRGGMGGGAAG DGGGYGKGGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Reverse Complement DGGGBGGGGSGMGGGAAG GGCGGCGG GGSGGCGGGGSGMGGGAAG Direction: Forward Position #: 2 Overlap #: 7 Alignment: -DGGGBGGGGSGMGGGAAG GGCGGCGG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Reverse Complement Original Motif CTTCCCYCSCCCCGCCSCC BBCRCCYCCGBB CTTCCCBCCCCCSSCCSCC Direction: Forward Position #: 4 Overlap #: 12 Alignment: CTTCCCYCSCCCCGCCSCC ---BBCRCCYCCGBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGsCTCss Reverse Complement Reverse Complement GGSGGSSGGGGGBGGGAAG BBGAGSCGVV GGGRGSCGGGGGBGGGAAG Direction: Forward Position #: 1 Overlap #: 10 Alignment: GGSGGSSGGGGGBGGGAAG BBGAGSCGVV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MZF1_5-13 Combined Motif Original Motif Original Motif GGGRGSCGGGGGBGGGAAG BKAGGGGDAD GGGVGVSGGGGRVGGGAAG Direction: Forward Position #: 4 Overlap #: 10 Alignment: GGGRGSCGGGGGBGGGAAG ---BKAGGGGDAD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Reverse Complement GGGVGVSGGGGRVGGGAAG BGRRRGRGGRTGRTTYGGGG BGGGRGRGGGKGRHKBGRRG Direction: Forward Position #: 2 Overlap #: 19 Alignment: -GGGVGVSGGGGRVGGGAAG BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 5 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 AAAAAAAAAAA Original Motif Original Motif AAAASAAA AAAAAAAAAAA AAAAAMAAAAA Direction: Forward Position #: 2 Overlap #: 8 Alignment: -AAAASAAA-- AAAAAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Reverse Complement Reverse Complement TTTTTYTTTTT TTTWTTTT TTTTTTTTTTT Direction: Forward Position #: 1 Overlap #: 8 Alignment: TTTTTYTTTTT TTTWTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Reverse Complement Reverse Complement AAAAAAAAAAA AAAAAAACAAARRA AAAAAAAHAAARRA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAAAAAAAAA--- AAAAAAACAAARRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Reverse Complement Reverse Complement TKKTTTHTTTTTTT HWTTTTTTWW TDTTTTTTTTTTTT Direction: Forward Position #: 1 Overlap #: 10 Alignment: TKKTTTHTTTTTTT HWTTTTTTWW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- aaACAAAACaa Combined Motif Original Motif Reverse Complement TDTTTTTTTTTTTT TTGTTTTGTTT TDTTKTTTTKTTTT Direction: Forward Position #: 3 Overlap #: 11 Alignment: TDTTTTTTTTTTTT --TTGTTTTGTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Original Motif TDTTKTTTTKTTTT BBTCTKTKTCHB BTTYTKTTTYBTTTT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -TDTTKTTTTKTTTT BBTCTKTKTCHB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Original Motif Reverse Complement BTTYTKTTTYBTTTT HTGTTTTTGHH BTKTTTTTKYBTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: BTTYTKTTTYBTTTT HTGTTTTTGHH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 2 Reverse Complement Original Motif AAAAVMYAAAAAYAV CACACACA MAMAMACAAAAAYAV Direction: Forward Position #: 1 Overlap #: 8 Alignment: AAAAVMYAAAAAYAV CACACACA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Reverse Complement Original Motif BTKTTTTTGTRTRTY DHATTTTTADD HHRTTTTTRTDTRTY Direction: Forward Position #: 1 Overlap #: 11 Alignment: BTKTTTTTGTRTRTY DHATTTTTADD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Reverse Complement HHRTTTTTRTDTRTY TGTGTGTGTGTKTG TGTGTKTKTRTDTGTY Direction: Forward Position #: 2 Overlap #: 13 Alignment: -HHRTTTTTRTDTRTY TGTGTGTGTGTKTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 6 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Klf4 Original Motif Reverse Complement CCCCRCCC GCCYCMCCCD DCCCCACCCG Direction: Backward Position #: 2 Overlap #: 8 Alignment: -CCCCRCCC- GCCYCMCCCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Reverse Complement Reverse Complement CGGGTGGGGD DDGGTGRGGBD BGGGTGGGGDD Direction: Forward Position #: 1 Overlap #: 10 Alignment: CGGGTGGGGD- DDGGTGRGGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Original Motif Reverse Complement BGGGTGGGGDD GGGGMGGG GGGGHGGGGDD Direction: Forward Position #: 1 Overlap #: 8 Alignment: BGGGTGGGGDD GGGGMGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Original Motif Reverse Complement GGGGHGGGGDD GGGGGYGGGG GGGGBGGGGGD Direction: Forward Position #: 1 Overlap #: 10 Alignment: GGGGHGGGGDD GGGGGYGGGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Reverse Complement Original Motif HCCCCCBCCCC SSCGCCSCCGCCCSS HCCCSCCCCCVCCCSS Direction: Forward Position #: 2 Overlap #: 10 Alignment: HCCCCCBCCCC----- -SSCGCCSCCGCCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Reverse Complement Reverse Complement SSGGGVGGGGGSGGGD GGCGGCGG GGSGGCGGGGGSGGGD Direction: Forward Position #: 1 Overlap #: 8 Alignment: SSGGGVGGGGGSGGGD GGCGGCGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Reverse Complement Reverse Complement HCCCSCCCCCGCCSCC BBCGCCCSGCVV HCCCVCSCCCSSCSCC Direction: Forward Position #: 4 Overlap #: 12 Alignment: HCCCSCCCCCGCCSCC ---BBCGCCCSGCVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Reverse Complement Original Motif GGSGSSGGGSGVGGGD TGYCAGGGGGCR TGBCRGGGGGCGVGGGD Direction: Forward Position #: 2 Overlap #: 11 Alignment: -GGSGSSGGGSGVGGGD TGYCAGGGGGCR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Original Motif Reverse Complement TGBCRGGGGGCGVGGGD GKGTGKGC GTGTGKGSGGGCGVGGGD Direction: Forward Position #: 2 Overlap #: 7 Alignment: -TGBCRGGGGGCGVGGGD GKGTGKGC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCrCYyYCGss Reverse Complement Original Motif HCCCVCGCCCSCYCACAC BBCRCCYCCGBB VBCSCCBCCSSCYCACAC Direction: Forward Position #: 1 Overlap #: 12 Alignment: HCCCVCGCCCSCYCACAC BBCRCCYCCGBB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 7 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 tyTCTkTkTCyy Reverse Complement Original Motif TTCTSTST BBTCTKTKTCHB CHBTTCTSTBTB Direction: Backward Position #: 4 Overlap #: 8 Alignment: -TTCTSTST--- BBTCTKTKTCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Original Motif Reverse Complement CHBTTCTSTBTB TTGTTTTGTTT CYGTTYTGTBTB Direction: Forward Position #: 1 Overlap #: 11 Alignment: CHBTTCTSTBTB TTGTTTTGTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rmACAGCAGsr Original Motif Reverse Complement CYGTTYTGTBTB DVCTGCTGTVB BHSTKCTGTBTB Direction: Forward Position #: 1 Overlap #: 11 Alignment: CYGTTYTGTBTB DVCTGCTGTVB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement BHSTKCTGTBTB TGTGTGTGTGTG TBYKTSTGTGTB Direction: Forward Position #: 1 Overlap #: 12 Alignment: BHSTKCTGTBTB TGTGTGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement TBYKTSTGTGTB TGTGTGTGTGTG TGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TBYKTSTGTGTB TGTGTGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Reverse Complement TGTGTGTGTGTG TTTTTTTTTTT TKTKTKTKTKTG Direction: Forward Position #: 1 Overlap #: 11 Alignment: TGTGTGTGTGTG TTTTTTTTTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Original Motif Original Motif TKTKTKTKTKTG TKKTTTGTTTTTTT TKTTTTTTTTTKTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: TKTKTKTKTKTG-- TKKTTTGTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Reverse Complement TKTTTTTTTTTKTT TGTGTGTGTGTKTG TGTKTKTKTKTKTK Direction: Forward Position #: 1 Overlap #: 14 Alignment: TKTTTTTTTTTKTT TGTGTGTGTGTKTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Reverse Complement Original Motif YAYAYAYAYAYACA CACACAVRCACACA CACACABACACACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: YAYAYAYAYAYACA CACACAVRCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 8 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 wtTTWwAAAaw Original Motif Reverse Complement TTTWWAAW DDTTTWAAAHH HTTTWWAAWDD Direction: Backward Position #: 2 Overlap #: 8 Alignment: --TTTWWAAW- DDTTTWAAAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Reverse Complement HTTTWWAAWDD DDTAAAAATHD HTTWAAAATHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: HTTTWWAAWDD DDTAAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAwAAww Original Motif Original Motif HTTWAAAATHD DDTAAWAAHH DWTAAWAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HTTWAAAATHD DDTAAWAAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif DWTAAWAATHD WWAAAAAAWH DWWAAAAAWHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DWTAAWAATHD WWAAAAAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Original Motif Original Motif DWWAAAAAWHD DDTAAAWAHH DDTAAAAAHHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DWWAAAAAWHD DDTAAAWAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wyATTTTAww Original Motif Reverse Complement DDTAAAAAHHD DDTAAAATHD DDTAAAAWHHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAAHHD DDTAAAATHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Original Motif Original Motif DDTAAAAWHHD HHCAAAAACAH HDYAAAAACHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: DDTAAAAWHHD HHCAAAAACAH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Reverse Complement DHGTTTTTKDH TTTTTTTTTTT TTKTTTTTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHGTTTTTKDH TTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Original Motif Reverse Complement TTKTTTTTTTT TTTWTTTT TTTTTTTTTTT Direction: Forward Position #: 1 Overlap #: 8 Alignment: TTKTTTTTTTT TTTWTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAATTAATTAww Original Motif Reverse Complement TTTTTTTTTTT DHTAATTAATTADH WTTWWTTWWTTADH Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTTTTTTTTTT--- DHTAATTAATTADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 9 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 ssCwGGCCwGCss Original Motif Reverse Complement GCTGGGAW BBGCTGGCCWGBB BBGCTGGSMWGBB Direction: Forward Position #: 3 Overlap #: 8 Alignment: --GCTGGGAW--- BBGCTGGCCWGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 Combined Motif Reverse Complement Reverse Complement BBCWYSCCAGCBB GCTGRCCT BGCTGSCCWGCBB Direction: Forward Position #: 2 Overlap #: 8 Alignment: BBCWYSCCAGCBB -GCTGRCCT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Reverse Complement Reverse Complement BBGCWGGSCAGCB DDGGTGRGGBD BDGSTGGGGDGCB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBGCWGGSCAGCB DDGGTGRGGBD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sgCTGGCCAGcs Reverse Complement Original Motif BGCDCCCCASCHB BBCTGGCCAGVV BGCTSSCCAGCVB Direction: Forward Position #: 1 Overlap #: 12 Alignment: BGCDCCCCASCHB BBCTGGCCAGVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCTswGCCms Reverse Complement Original Motif BVGCTGGSSAGCB VBGCTSAGCCHB BBGCTGRGCMGBB Direction: Forward Position #: 1 Overlap #: 12 Alignment: BVGCTGGSSAGCB VBGCTSAGCCHB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- INSM1 Combined Motif Reverse Complement Reverse Complement BBCRGCMCAGCBB MGCCCCCTGMCA BBCRGCMCAGCCCCCTGMCA Direction: Forward Position #: 9 Overlap #: 5 Alignment: BBCRGCMCAGCBB------- --------MGCCCCCTGMCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- rrAGGGGGArr Combined Motif Reverse Complement Original Motif TGYCAGGGGGCTGRGCMGBB VVAGGGGGAVV TGBVAGGGGGMBGRGCMGBB Direction: Forward Position #: 3 Overlap #: 11 Alignment: TGYCAGGGGGCTGRGCMGBB --VVAGGGGGAVV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- EWSR1-FLI1 Combined Motif Reverse Complement Reverse Complement BBCRGCMCVYCCCCCTVVCA CCTTCCTTCCTTCCTTCC BBCRGCMCVCCYYCCTTCCWTCCTTCC Direction: Forward Position #: 10 Overlap #: 11 Alignment: BBCRGCMCVYCCCCCTVVCA------- ---------CCTTCCTTCCTTCCTTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCksCGss Original Motif Original Motif BBCRGCMCVCCYYCCTTCCWTCCTTCC VVCGCKSCGBB BBCGSBSCGCCYYCCTTCCWTCCTTCC Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBCRGCMCVCCYYCCTTCCWTCCTTCC VVCGCKSCGBB---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGMsGRGCGss Original Motif Reverse Complement BBCGSBSCGCCYYCCTTCCWTCCTTCC BBCGCCCSGCVV BBCGCCCCGCVBYCCTTCCWTCCTTCC Direction: Forward Position #: 1 Overlap #: 12 Alignment: BBCGSBSCGCCYYCCTTCCWTCCTTCC BBCGCCCSGCVV--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 10 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 twTACATAvw Original Motif Original Motif TAMATA HHTACATAVD HHTACATAVD Direction: Forward Position #: 3 Overlap #: 6 Alignment: --TAMATA-- HHTACATAVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Original Motif Original Motif HHTACATAVD DDTAAAWAHH HHTAMATAHH Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHTACATAVD DDTAAAWAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Reverse Complement HHTAMATAHH DDTAAAAATHD DDTAAAWATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHTAMATAHH- DDTAAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wrTGTATACAyw Original Motif Original Motif DDTAAAWATHD HDTGTATACAHD HDTRWATAYAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: DDTAAAWATHD- HDTGTATACAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAATTAATTAww Original Motif Original Motif HDTRWATAYAHD HDTAATTAATTAHD HDTAAWTAHWTAHD Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDTRWATAYAHD-- HDTAATTAATTAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Original Motif Reverse Complement HDTAAWTAHWTAHD TGTGTGTG AWTAHWTAHDTGTRHDTAAWTAHW Direction: Backward Position #: 11 Overlap #: 4 Alignment: ----HDTAAWTAHWTAHD ----------TGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 11 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 sssCGssGCsss Original Motif Original Motif CCGCCGCC SSSCGSSGCSSS SSCCGCSGCCSS Direction: Backward Position #: 3 Overlap #: 8 Alignment: --CCGCCGCC-- SSSCGSSGCSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Reverse Complement Reverse Complement SSGGCSGCGGSS SSGGGCGGSGGCGSS SSGGSGGCGGSGGCGSS Direction: Forward Position #: 3 Overlap #: 10 Alignment: SSGGCSGCGGSS----- --SSGGGCGGSGGCGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Reverse Complement Original Motif SSCGCCSCCGCCSCCSS CCCCRCCC CCCCRCCCCCGCCSCCSS Direction: Forward Position #: 2 Overlap #: 7 Alignment: -SSCGCCSCCGCCSCCSS CCCCRCCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCrCYyYCGss Reverse Complement Reverse Complement SSGGSGGCGGGGGMGGGG BBCGGKGGMGBB SSCGSGGSSGGGGMGGGG Direction: Forward Position #: 1 Overlap #: 12 Alignment: SSGGSGGCGGGGGMGGGG BBCGGKGGMGBB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCksCGss Original Motif Reverse Complement SSCGSGGSSGGGGMGGGG BBCGSRGCGVV BSCGSRGCGGSGGMGGGG Direction: Forward Position #: 1 Overlap #: 11 Alignment: SSCGSGGSSGGGGMGGGG BBCGSRGCGVV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Reverse Complement BSCGSRGCGGSGGMGGGG VAGGCCBBGGCVBB VASGCCGCGGSSGVGGGG Direction: Forward Position #: 1 Overlap #: 14 Alignment: BSCGSRGCGGSGGMGGGG VAGGCCBBGGCVBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Reverse Complement Original Motif CCCCVCSSCCGCGGCSTV CYBCCTCC CCCCCYCCCCGCGGCSTV Direction: Forward Position #: 1 Overlap #: 8 Alignment: CCCCVCSSCCGCGGCSTV CYBCCTCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Reverse Complement Original Motif VASGCCGCGGGGMGGGGG DGGGYGKGGC DGGGCGKGGSGGMGGGGG Direction: Forward Position #: 1 Overlap #: 10 Alignment: VASGCCGCGGGGMGGGGG DGGGYGKGGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Reverse Complement Original Motif CCCCCYCCSCCYCGCCCH CCCCKCCCCC CCCCCCCBCCCCCGCCCH Direction: Forward Position #: 4 Overlap #: 10 Alignment: CCCCCYCCSCCYCGCCCH ---CCCCKCCCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Reverse Complement CCCCCCCBCCCCCGCCCH MGCCCCCTGMCA CBCCCCCHBCCMCGCCCH Direction: Forward Position #: 1 Overlap #: 12 Alignment: CCCCCCCBCCCCCGCCCH MGCCCCCTGMCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 12 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 ssCwGGCCwGCss Original Motif Original Motif AGGMCAGC BBCWGGCCAGCBB BBCAGGCCAGCBB Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---AGGMCAGC-- BBCWGGCCAGCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Reverse Complement Reverse Complement BBGCTGGCCTGBB GTTGACCTTTGACCTTT BBGYTGRCCTKTGACCTTT Direction: Forward Position #: 3 Overlap #: 11 Alignment: BBGCTGGCCTGBB------ --GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement BBGYTGRCCTKTGACCTTT GGYGCTGTCCATGGTGCTGAA GVHGCTGWCCWKKGWSCTKWA Direction: Forward Position #: 2 Overlap #: 19 Alignment: -BBGYTGRCCTKTGACCTTT- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sgCTGGCCAGcs Combined Motif Original Motif Reverse Complement GVHGCTGWCCWKKGWSCTKWA VVCTGGCCAGBB GVHGCTGGCCAGBGWSCTKWA Direction: Forward Position #: 3 Overlap #: 12 Alignment: GVHGCTGWCCWKKGWSCTKWA --VVCTGGCCAGBB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement GVHGCTGGCCAGBGWSCTKWA MGGTCAGGGTGACCTRDBHV MGGTSAVGCTGRCCWGBBHVCTKWA Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----GVHGCTGGCCAGBGWSCTKWA MGGTCAGGGTGACCTRDBHV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- mkARGCCACG Combined Motif Reverse Complement Original Motif TWYAGVHBBCWGGKCAGCVTSACCY CKAGGCCACG THBAGGCCACDGGKCAGCVTSACCY Direction: Forward Position #: 2 Overlap #: 10 Alignment: TWYAGVHBBCWGGKCAGCVTSACCY -CKAGGCCACG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Reverse Complement MGGTSAVGCTGRCCHGTGGCCTVDA BAGGYCABHBTGACCKHV VRGKBMVBBTKGMCCKTGGCCTVDA Direction: Forward Position #: 1 Overlap #: 18 Alignment: MGGTSAVGCTGRCCHGTGGCCTVDA BAGGYCABHBTGACCKHV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 13 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 tyTCTkTkTCyy Original Motif Reverse Complement GAGRCAGR VHGARAYAGAVV VHGAGACAGAVV Direction: Forward Position #: 3 Overlap #: 8 Alignment: --GAGRCAGR-- VHGARAYAGAVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGsCTCss Original Motif Reverse Complement VHGAGACAGAVV BBGAGSCGVV VVGAGRCRGRVV Direction: Forward Position #: 1 Overlap #: 10 Alignment: VHGAGACAGAVV BBGAGSCGVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 14 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Motif 27 Original Motif Original Motif GCRCACRC CAYACACACACACA CAYRCACACACACA Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---GCRCACRC--- CAYACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Reverse Complement Reverse Complement TGTGTGTGTGMKTG TGTGTGTGTGTG TGTGTGTGTGHGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGMKTG TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement TGTGTGTGTGHGTG TGTGTGTGTGTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGHGTG TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Original Motif TGTGTGTGTGTGTG DGGGYGKGGC TGKGTGTGKSTGTG Direction: Forward Position #: 1 Overlap #: 10 Alignment: TGTGTGTGTGTGTG DGGGYGKGGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Original Motif Reverse Complement TGKGTGTGKSTGTG TGTGTGKVTGTGTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGKGTGTGKSTGTG TGTGTGKVTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Original Motif TGTGTGTGTGTGTG HGCGTGGGCGK TGYGTGKGYGTGTG Direction: Forward Position #: 1 Overlap #: 11 Alignment: TGTGTGTGTGTGTG HGCGTGGGCGK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Reverse Complement Original Motif CACACMCYCACKCA CCCCRCCC CCMCRCCCYCACKCA Direction: Forward Position #: 2 Overlap #: 7 Alignment: -CACACMCYCACKCA CCCCRCCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Reverse Complement Reverse Complement TGYGTGKGGGKGYGG DDGGTGRGGBD DGGGTGGGGGDGYGG Direction: Forward Position #: 1 Overlap #: 11 Alignment: TGYGTGKGGGKGYGG DDGGTGRGGBD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yrTGTGCACAyr Original Motif Original Motif DGGGTGGGGGDGYGG BVTGTGCACABV BGTGTGSRSRBGYGG Direction: Forward Position #: 1 Overlap #: 12 Alignment: DGGGTGGGGGDGYGG BVTGTGCACABV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGrGCGss Original Motif Original Motif BGTGTGSRSRBGYGG VSCGRGCGBV BGYGTGCGSVBGYGG Direction: Forward Position #: 1 Overlap #: 10 Alignment: BGTGTGSRSRBGYGG VSCGRGCGBV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 15 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 wyATTTTAww Reverse Complement Original Motif CATTTKC DHATTTTADD DMATTTTMDD Direction: Forward Position #: 2 Overlap #: 7 Alignment: -CATTTKC-- DHATTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Original Motif DMATTTTMDD DHATTTTTADD DHATTTTHADD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DMATTTTMDD- DHATTTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dwCTTTTCwy Original Motif Original Motif DHATTTTHADD DHCTTTTCHH DHMTTTTCHHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHATTTTHADD DHCTTTTCHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Reverse Complement Original Motif DHHGAAAAYHD WWAAAAAAWH DHWRAAAAYHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHHGAAAAYHD WWAAAAAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Combined Motif Original Motif Reverse Complement DHWRAAAAYHD HDAMACACAKKTKTKTHD DHDAAAMACADKTKTKTHD Direction: Forward Position #: 2 Overlap #: 10 Alignment: DHWRAAAAYHD-------- -HDAMACACAKKTKTKTHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Original Motif Original Motif DHDAAAMACADKTKTKTHD HHTTTWAAADD DHTWWAAAAHDKTKTKTHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHDAAAMACADKTKTKTHD HHTTTWAAADD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement DHTWWAAAAHDKTKTKTHD TGRCCTKTGHCCKAB DHTWWAAAAWDDYSTKTVBCCKAB Direction: Forward Position #: 10 Overlap #: 10 Alignment: DHTWWAAAAHDKTKTKTHD----- ---------TGRCCTKTGHCCKAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Reverse Complement Reverse Complement BTRGGVVARASMHHWTTTTWWAHD VHGARAYAGAVV VHGRRAHAGAVMHHWTTTTWWAHD Direction: Forward Position #: 1 Overlap #: 12 Alignment: BTRGGVVARASMHHWTTTTWWAHD VHGARAYAGAVV------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Reverse Complement DHTWWAAAAWDDYVTCTDTMKCHV AKGYYCAAAGRTCA VDKHHMAAAGRTCATCTDTMKCHV Direction: Forward Position #: 1 Overlap #: 14 Alignment: DHTWWAAAAWDDYVTCTDTMKCHV AKGYYCAAAGRTCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yrTGTGCACAyr Reverse Complement Original Motif VHGRRAHAGATGAMCTTTYHHYDB BVTGTGCACABV BHKGKRCASABDAMCTTTYHHYDB Direction: Forward Position #: 1 Overlap #: 12 Alignment: VHGRRAHAGATGAMCTTTYHHYDB BVTGTGCACABV------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 16 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 RXRAVDR Original Motif Original Motif CTGDGTTC GGGTCAWBGRGTTCA ACTGRGTTCGGGTCA Direction: Backward Position #: 2 Overlap #: 8 Alignment: ------CTGDGTTC- GGGTCAWBGRGTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif EWSR1-FLI1 Original Motif Original Motif ACTGRGTTCGGGTCA GGAAGGAAGGAAGGAAGG GGAAGGAAGGAAGGAMKGRGTTCGGGTCA Direction: Forward Position #: 15 Overlap #: 4 Alignment: --------------ACTGRGTTCGGGTCA GGAAGGAAGGAAGGAAGG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif TGACCCGAACKCYYTCCTTCCTTCCTTCC TGAMCTTTGMMCYT TGACCYKWRCDCYTTCCTTCCTTCCTTCC Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGACCCGAACKCYYTCCTTCCTTCCTTCC TGAMCTTTGMMCYT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Reverse Complement GGAAGGAAGGAAGGAAKGDGKWYKGGTCA VRVDGGHACAVDDKGTHCTDWH GGAAGGAAGGAAGGAAKGDGKHBGGDWCAVDDKGTHCTDWH Direction: Forward Position #: 20 Overlap #: 10 Alignment: GGAAGGAAGGAAGGAAKGDGKWYKGGTCA------------ -------------------VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGCTswGCCms Combined Motif Reverse Complement Reverse Complement HWDAGHACRHHVTGWHCCVHYCDCYTTCCTTCCTTCCTTCC BDGGCTSAGCBV HDDRGCWCAGCVBGWHCCVHYCDCYTTCCTTCCTTCCTTCC Direction: Forward Position #: 2 Overlap #: 12 Alignment: HWDAGHACRHHVTGWHCCVHYCDCYTTCCTTCCTTCCTTCC -BDGGCTSAGCBV---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Original Motif HDDRGCWCAGCVBGWHCCVHYCDCYTTCCTTCCTTCCTTCC TTCAGCACCATGGACAGCKCC HDDDSMRCACCVTGRACMGHHCHCYTTCCTTCCTTCCTTCC Direction: Forward Position #: 3 Overlap #: 21 Alignment: HDDRGCWCAGCVBGWHCCVHYCDCYTTCCTTCCTTCCTTCC --TTCAGCACCATGGACAGCKCC------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tyTCTkTkTCyy Combined Motif Original Motif Reverse Complement HDDDSMRCACCVTGRACMGHHCHCYTTCCTTCCTTCCTTCC VHGARAYAGAVV HHHGAAACAGMVHGRACMGHHCHCYTTCCTTCCTTCCTTCC Direction: Forward Position #: 2 Overlap #: 12 Alignment: HDDDSMRCACCVTGRACMGHHCHCYTTCCTTCCTTCCTTCC -VHGARAYAGAVV---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- rmACAGCAGsr Combined Motif Original Motif Original Motif HHHGAAACAGMVHGRACMGHHCHCYTTCCTTCCTTCCTTCC VVACAGCAGVD HHHRCARCAGVVHGRACMGHHCHCYTTCCTTCCTTCCTTCC Direction: Forward Position #: 2 Overlap #: 11 Alignment: HHHGAAACAGMVHGRACMGHHCHCYTTCCTTCCTTCCTTCC -VVACAGCAGVD----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 17 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 EWSR1-FLI1 Original Motif Original Motif RGGAAR GGAAGGAAGGAAGGAAGG GGAAGGAAGGAAGGAAGG Direction: Forward Position #: 12 Overlap #: 6 Alignment: -----------RGGAAR- GGAAGGAAGGAAGGAAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- rrAGGGGGArr Combined Motif Original Motif Original Motif GGAAGGAAGGAAGGAAGG VVAGGGGGAVV GGAAGGRRGRARGGAAGG Direction: Forward Position #: 2 Overlap #: 11 Alignment: GGAAGGAAGGAAGGAAGG -VVAGGGGGAVV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dwCTTTTCwy Combined Motif Reverse Complement Original Motif CCTTCCKTKCMMCCTTCC DHCTTTTCHH CCTTCYTTTCHMCCTTCC Direction: Forward Position #: 3 Overlap #: 10 Alignment: CCTTCCKTKCMMCCTTCC --DHCTTTTCHH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Combined Motif Original Motif Original Motif CCTTCYTTTCHMCCTTCC BAACGTCCGC CCTTCYTTTCHAMCKTCCGC Direction: Forward Position #: 11 Overlap #: 8 Alignment: CCTTCYTTTCHMCCTTCC-- ----------BAACGTCCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Reverse Complement Reverse Complement GCGGARGYTDGAAAKGAAGG GGAGGVMG GGMGGAAGYTDGAAAKGAAGG Direction: Forward Position #: 2 Overlap #: 7 Alignment: -GCGGARGYTDGAAAKGAAGG GGAGGVMG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MZF1_5-13 Reverse Complement Reverse Complement CCTTCYTTTCHAMCTTCCYCC BTHCCCCTYB BYCYYCYTTBCHAMCTTCCYCC Direction: Forward Position #: 2 Overlap #: 9 Alignment: -CCTTCYTTTCHAMCTTCCYCC BTHCCCCTYB------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NFKB1 Combined Motif Reverse Complement Reverse Complement GGMGGAAGYTDGVAAKGKKGKD GGGGAAKCCCC GGMGGAAGYTDGVARGGGDRKMCCC Direction: Forward Position #: 15 Overlap #: 8 Alignment: GGMGGAAGYTDGVAAKGKKGKD--- --------------GGGGAAKCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Combined Motif Original Motif Original Motif GGMGGAAGYTDGVARGGGDRKMCCC GAGRCAGR GGAGGCAGBTDGVARGGGDRKMCCC Direction: Forward Position #: 2 Overlap #: 8 Alignment: GGMGGAAGYTDGVARGGGDRKMCCC -GAGRCAGR---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Reverse Complement GGAGGCAGBTDGVARGGGDRKMCCC VHGARAYAGAVV VGGAGRCAGAHDGVARGGGDRKMCCC Direction: Forward Position #: 2 Overlap #: 11 Alignment: -GGAGGCAGBTDGVARGGGDRKMCCC VHGARAYAGAVV-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Original Motif Reverse Complement VGGAGRCAGAHDGVARGGGDRKMCCC DDGGTGRGGBD VGGRKGVRGDHDGVARGGGDRKMCCC Direction: Forward Position #: 1 Overlap #: 11 Alignment: VGGAGRCAGAHDGVARGGGDRKMCCC DDGGTGRGGBD--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 18 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Motif 2 Original Motif Original Motif AMACA CACACACA AMACACAC Direction: Backward Position #: 1 Overlap #: 5 Alignment: ---AMACA CACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Original Motif AMACACAC CACACACACACA CACACACACACA Direction: Forward Position #: 2 Overlap #: 8 Alignment: -AMACACAC--- CACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Reverse Complement Reverse Complement TGTGTGTGTGTG TGTGTGTGTGTKTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGTG-- TGTGTGTGTGTKTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement TGTGTGTGTGTGTG TGTGTGTGTGTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGTGTG TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Original Motif Reverse Complement TGTGTGTGTGTGTG TGTGTGKVTGTGTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGTGTGTGTGTGTG TGTGTGKVTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- aaACAAAACaa Combined Motif Original Motif Reverse Complement TGTGTGTGTGTGTG TTGTTTTGTTT TGTGTGTBKKTKTGTTT Direction: Forward Position #: 7 Overlap #: 8 Alignment: TGTGTGTGTGTGTG--- ------TTGTTTTGTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Reverse Complement Original Motif AAACARARYBACACACA HHCAAAAACAH AAMMAAAACHACACACA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAACARARYBACACACA HHCAAAAACAH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Reverse Complement Original Motif TGTGTGTHGTTTTYRTT DHAYAYAYRTGTGTRTDH DHAYAYAYRTGTGTGTDKTTTTYRTT Direction: Forward Position #: 10 Overlap #: 9 Alignment: ---------TGTGTGTHGTTTTYRTT DHAYAYAYRTGTGTRTDH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wrTGTATACAyw Original Motif Original Motif DHAYAYAYRTGTGTGTDKTTTTYRTT HDTGTATACAHD HDTRTAYACATDTGTGTDKTTTTYRTT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -DHAYAYAYRTGTGTGTDKTTTTYRTT HDTGTATACAHD--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Original Motif AAMMAAAAYDACACAHATGTMTAMADH AAAASAAA AAAAMAAAYDACACAHATGTMTAMADH Direction: Forward Position #: 1 Overlap #: 8 Alignment: AAMMAAAAYDACACAHATGTMTAMADH AAAASAAA------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 19 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Motif 13 Reverse Complement Reverse Complement CCWGSCT MCTGKCTC CCTGBCTC Direction: Forward Position #: 1 Overlap #: 7 Alignment: CCWGSCT- MCTGKCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif EWSR1-FLI1 Original Motif Reverse Complement CCTGBCTC CCTTCCTTCCTTCCTTCC CCTKCCTYCCTTCCTTCC Direction: Forward Position #: 1 Overlap #: 8 Alignment: CCTGBCTC---------- CCTTCCTTCCTTCCTTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCwGGCCwGCss Combined Motif Reverse Complement Reverse Complement GGAAGGAAGGKAGGYAGG BBGCTGGCCWGBB GGAAGGAAGGKAGGCWGGCCWGBB Direction: Forward Position #: 12 Overlap #: 7 Alignment: GGAAGGAAGGKAGGYAGG------ -----------BBGCTGGCCWGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- INSM1 Combined Motif Reverse Complement Reverse Complement BBCWGGCCWGCCTYCCTTCCTTCC MGCCCCCTGMCA BHSYSSCCWGMCWYCCTTCCTTCC Direction: Forward Position #: 2 Overlap #: 12 Alignment: BBCWGGCCWGCCTYCCTTCCTTCC -MGCCCCCTGMCA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGsCTCss Original Motif Original Motif BHSYSSCCWGMCWYCCTTCCTTCC VVCGSCTCBB BVCBSCYCDGMCWYCCTTCCTTCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: BHSYSSCCWGMCWYCCTTCCTTCC VVCGSCTCBB-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGsCwsCss Original Motif Original Motif BVCBSCYCDGMCWYCCTTCCTTCC BBCGSCWSCBB BVCGSCTCCBVCWYCCTTCCTTCC Direction: Forward Position #: 1 Overlap #: 11 Alignment: BVCBSCYCDGMCWYCCTTCCTTCC BBCGSCWSCBB------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Original Motif Original Motif BVCGSCTCCBVCWYCCTTCCTTCC CCAGYYHVADCCRG CCVGBCHVHDCCDSCCTTCCTTCC Direction: Forward Position #: 1 Overlap #: 14 Alignment: BVCGSCTCCBVCWYCCTTCCTTCC CCAGYYHVADCCRG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Reverse Complement GGAAGGAAGGSDGGHHVHGBCVGG GGYGCTGTCCATGGTGCTGAA GGAAGGAAGGSDGGHBCTGTCCVBGGTGCTGAA Direction: Forward Position #: 13 Overlap #: 12 Alignment: GGAAGGAAGGSDGGHHVHGBCVGG--------- ------------GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Reverse Complement Original Motif TTCAGCACCBBGGACAGBDCCDSCCTTCCTTCC CCCCKCCCCC TTCAGCACCCBGSMCMSBDCCDSCCTTCCTTCC Direction: Forward Position #: 8 Overlap #: 10 Alignment: TTCAGCACCBBGGACAGBDCCDSCCTTCCTTCC -------CCCCKCCCCC---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sgCTGGCCAGcs Original Motif Reverse Complement TTCAGCACCCBGSMCMSBDCCDSCCTTCCTTCC VVCTGGCCAGBB BBCWGSMCMSBBSMCMSBDCCDSCCTTCCTTCC Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTCAGCACCCBGSMCMSBDCCDSCCTTCCTTCC VVCTGGCCAGBB--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 20 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 20 ssGCTswGCCms Original Motif Original Motif CTCTGY VBGCTSAGCCHB VBGCTCWGCCHB Direction: Forward Position #: 4 Overlap #: 6 Alignment: ---CTCTGY--- VBGCTSAGCCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Reverse Complement VBGCTCWGCCHB TTCTSTST VTKCTCTGYCHB Direction: Forward Position #: 2 Overlap #: 8 Alignment: VBGCTCWGCCHB -TTCTSTST--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif BDGMCAGAGRAV AAAGGTCAAAGGTCAAC AAAGGTCAACHDRRSWSBDGMC Direction: Backward Position #: 11 Overlap #: 7 Alignment: BDGMCAGAGRAV---------- -----AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 21 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Motif 15 Original Motif Reverse Complement ATKTM CATTTKC CATTTBC Direction: Forward Position #: 2 Overlap #: 5 Alignment: -ATKTM- CATTTKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Original Motif Reverse Complement CATTTBC TATRTA YATDTAC Direction: Forward Position #: 1 Overlap #: 6 Alignment: CATTTBC TATRTA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Original Motif YATDTAC DHATTTTTADD DHATTTWYADD Direction: Forward Position #: 2 Overlap #: 7 Alignment: -YATDTAC--- DHATTTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wyATTTTAww Original Motif Original Motif DHATTTWYADD DHATTTTADD DHATTTTHADD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHATTTWYADD DHATTTTADD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Reverse Complement Reverse Complement DDTHAAAATHD VHGARAYAGAVV HHKAAAHAKAHV Direction: Forward Position #: 1 Overlap #: 11 Alignment: DDTHAAAATHD- VHGARAYAGAVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Reverse Complement Reverse Complement BHTRTHTTTYHH DBTATGTAHH HBTATGTWHHHH Direction: Forward Position #: 1 Overlap #: 10 Alignment: BHTRTHTTTYHH DBTATGTAHH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Original Motif Reverse Complement HBTATGTWHHHH HHTWTTTADD HHTATTTAHHHH Direction: Forward Position #: 1 Overlap #: 10 Alignment: HBTATGTWHHHH HHTWTTTADD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Reverse Complement HHTATTTAHHHH HWTTTTTTWW HHTWTTTWWHHH Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHTATTTAHHHH HWTTTTTTWW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Original Motif HHHWWAAAWAHH HVCATGCATGCABD HVCATGCATGCAHDWAAAWAHH Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------HHHWWAAAWAHH HVCATGCATGCABD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wrTGTATACAyw Reverse Complement Original Motif HHTWTTTWDHTGCATGCATGBH HDTGTATACAHD HDTKTWTAHATDCATGCATGBH Direction: Forward Position #: 1 Overlap #: 12 Alignment: HHTWTTTWDHTGCATGCATGBH HDTGTATACAHD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 22 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 22 Motif 11 Original Motif Original Motif CMGCRGC CCGCCGCC CCGCVGCC Direction: Forward Position #: 1 Overlap #: 7 Alignment: CMGCRGC- CCGCCGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rmACAGCAGsr Reverse Complement Reverse Complement GGCBGCGG DVCTGCTGTVB GGCTGCKGTVB Direction: Forward Position #: 1 Overlap #: 8 Alignment: GGCBGCGG--- DVCTGCTGTVB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCksCGss Reverse Complement Reverse Complement VVACRGCAGCC BBCGSRGCGVV BVCRCRGCRGSC Direction: Forward Position #: 2 Overlap #: 10 Alignment: -VVACRGCAGCC BBCGSRGCGVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGsCwsCss Reverse Complement Original Motif GSCMGCKGMGVB BBCGSCWSCBB BVCSGCTGCVBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: GSCMGCKGMGVB BBCGSCWSCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif BVCSGCTGCVBB TTCAGCACCATGGACAGCKCC BBCRGCASCDBGGACAGCKCC Direction: Forward Position #: 1 Overlap #: 12 Alignment: BVCSGCTGCVBB--------- TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sssCGssGCsss Original Motif Original Motif BBCRGCASCDBGGACAGCKCC SSSCGSSGCSSS BBCCGCVSCVBGGACAGCKCC Direction: Forward Position #: 1 Overlap #: 12 Alignment: BBCRGCASCDBGGACAGCKCC SSSCGSSGCSSS--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wsAGCTACwy Reverse Complement Original Motif GGYGCTGTCCBVGSBGCGGBB DVAGCTACHB DVAGCTRYCBBVGSBGCGGBB Direction: Forward Position #: 1 Overlap #: 10 Alignment: GGYGCTGTCCBVGSBGCGGBB DVAGCTACHB----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Original Motif BBCCGCVSCVBBGKKAGCTVH CCCCRCCC BBCCSCRCCCBBGKKAGCTVH Direction: Forward Position #: 3 Overlap #: 8 Alignment: BBCCGCVSCVBBGKKAGCTVH --CCCCRCCC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Reverse Complement Reverse Complement DVAGCTRYCBBGGGKGSGGBB GCGGACGTTV GTTVGSGGRCDVAGCTRYCBBGGGK Direction: Backward Position #: 5 Overlap #: 6 Alignment: DVAGCTRYCBBGGGKGSGGBB---- ---------------GCGGACGTTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 23 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Motif 6 Reverse Complement Reverse Complement GGGGMGGG GGGKGGGG GGGGSGGG Direction: Forward Position #: 1 Overlap #: 8 Alignment: GGGGMGGG GGGKGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Reverse Complement Original Motif CCCSCCCC CCCCKCCCCC CCCCYCCCCC Direction: Forward Position #: 1 Overlap #: 8 Alignment: CCCSCCCC-- CCCCKCCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Reverse Complement CCCCYCCCCC GCCYCMCCCD SCCCCCCCCH Direction: Forward Position #: 1 Overlap #: 10 Alignment: CCCCYCCCCC GCCYCMCCCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Reverse Complement Reverse Complement DGGGGGGGGS DDGGTGRGGBD DGGGKGGGGBD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DGGGGGGGGS- DDGGTGRGGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Reverse Complement DGGGKGGGGBD SSGGGCGGSGGCGSS DGGGGGVGGSGGCGSS Direction: Forward Position #: 2 Overlap #: 10 Alignment: DGGGKGGGGBD----- -SSGGGCGGSGGCGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Reverse Complement Original Motif SSCGCCSCCVCCCCCH BBCRCCYCCGBB SSCGCCGCCHCCSCBH Direction: Forward Position #: 4 Overlap #: 12 Alignment: SSCGCCSCCVCCCCCH ---BBCRCCYCCGBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Reverse Complement Original Motif DBGSGGDGGCGGCGSS HGCGTGGGCGK HGCGBGGGSGBGGCGSS Direction: Forward Position #: 2 Overlap #: 10 Alignment: -DBGSGGDGGCGGCGSS HGCGTGGGCGK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Reverse Complement Reverse Complement SSCGCCBCSCCCVCGCH BBCGCCCSGCVV SSCVSCGCCCCSCCBCH Direction: Forward Position #: 4 Overlap #: 12 Alignment: SSCGCCBCSCCCVCGCH ---BBCGCCCSGCVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Reverse Complement HGBGGSGGGGCGSVGSS BGRRRGRGGRTGRTTYGGGG HGBBGRGGGGVGGTGGBTYGGGG Direction: Forward Position #: 4 Overlap #: 14 Alignment: HGBGGSGGGGCGSVGSS------ ---BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCksCGss Original Motif Reverse Complement HGBBGRGGGGVGGTGGBTYGGGG BBCGSRGCGVV BGCGSRGSGGVGGTGGBTYGGGG Direction: Forward Position #: 1 Overlap #: 11 Alignment: HGBBGRGGGGVGGTGGBTYGGGG BBCGSRGCGVV------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 24 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 24 Motif 9 Original Motif Original Motif CTGGGA GCTGGGAW WCTGGGAG Direction: Backward Position #: 2 Overlap #: 6 Alignment: -CTGGGA- GCTGGGAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement CTCCCAGW GGYGCTGTCCATGGTGCTGAA GGYGCTSYCMRWGGTGCTGAA Direction: Forward Position #: 5 Overlap #: 8 Alignment: ----CTCCCAGW--------- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- rrAGGGGGArr Combined Motif Original Motif Reverse Complement GGYGCTSYCMRWGGTGCTGAA VVTCCCCCTVV GVHKCYCCCYVHGGTGCTGAA Direction: Forward Position #: 2 Overlap #: 11 Alignment: GGYGCTSYCMRWGGTGCTGAA -VVTCCCCCTVV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MZF1_1-4 Combined Motif Original Motif Reverse Complement GVHKCYCCCYVHGGTGCTGAA TCCCCV GVTYCCCCCYVHGGTGCTGAA Direction: Forward Position #: 3 Overlap #: 6 Alignment: GVHKCYCCCYVHGGTGCTGAA --TCCCCV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Original Motif Reverse Complement GVTYCCCCCYVHGGTGCTGAA DBTGCACTGGVD DBTGCMCYSBVHGGTGCTGAA Direction: Forward Position #: 1 Overlap #: 12 Alignment: GVTYCCCCCYVHGGTGCTGAA DBTGCACTGGVD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Reverse Complement TTCAGCACCHVBSMGYGCABH BGRRRGRGGRTGRTTYGGGG TTCAGCACCHVBSRGDGVRGVTGRTTYGGGG Direction: Forward Position #: 12 Overlap #: 10 Alignment: TTCAGCACCHVBSMGYGCABH---------- -----------BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Reverse Complement Reverse Complement CCCCMAAMCAVCKVCDCKSBVHGGTGCTGAA GAACDCAG CCCSAAMHCAGCKVCDCKSBVHGGTGCTGAA Direction: Forward Position #: 4 Overlap #: 8 Alignment: CCCCMAAMCAVCKVCDCKSBVHGGTGCTGAA ---GAACDCAG-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Reverse Complement CCCSAAMHCAGCKVCDCKSBVHGGTGCTGAA MGCCCCCTGMCA MGCCCCMWVHCAGCKVCDCKSBVHGGTGCTGAA Direction: Forward Position #: 3 Overlap #: 10 Alignment: --CCCSAAMHCAGCKVCDCKSBVHGGTGCTGAA MGCCCCCTGMCA--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Original Motif Reverse Complement MGCCCCMWVHCAGCKVCDCKSBVHGGTGCTGAA GYRYCCMTKGGYRSC GHRYCCCHDGGCASCKVCDCKSBVHGGTGCTGAA Direction: Forward Position #: 2 Overlap #: 14 Alignment: -MGCCCCMWVHCAGCKVCDCKSBVHGGTGCTGAA GYRYCCMTKGGYRSC------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sgCTGGCCAGcs Reverse Complement Original Motif TTCAGCACCHVBSRGDGVRGSTGCCDHGGGKMDC BBCTGGCCAGVV BBCWGSMCMGVBSRGDGVRGSTGCCDHGGGKMDC Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTCAGCACCHVBSRGDGVRGSTGCCDHGGGKMDC BBCTGGCCAGVV---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 25 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 25 Motif 27 Original Motif Original Motif CACACAVRCACACA CAYACACACACACA CACACACACACACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACAVRCACACA CAYACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Original Motif Original Motif CACACACACACACA HACAYAYACATRHD CACACACACAYACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACACACACACA HACAYAYACATRHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Original Motif CACACACACAYACA CCCCMAAMCAMCCMCMMMCV CMCMMAMACACMCMCMMMCV Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACACACAYACA------ CCCCMAAMCAMCCMCMMMCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Combined Motif Original Motif Original Motif CMCMMAMACACMCMCMMMCV DHAYAYAYRTGTGTRTDH CMCMHAYACAYVYRYVHVYVH Direction: Forward Position #: 4 Overlap #: 17 Alignment: CMCMMAMACACMCMCMMMCV- ---DHAYAYAYRTGTGTRTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Original Motif CMCMHAYACAYVYRYVHVYVH HVCATGCATGCABD HVCAYRCATRCAYVYRYVHVYVH Direction: Forward Position #: 3 Overlap #: 12 Alignment: --CMCMHAYACAYVYRYVHVYVH HVCATGCATGCABD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Original Motif Reverse Complement HVCAYRCATRCAYVYRYVHVYVH AAAAAAACAAARRA HVCAHAMAHDCAAAHRWVHVYVH Direction: Forward Position #: 4 Overlap #: 14 Alignment: HVCAYRCATRCAYVYRYVHVYVH ---AAAAAAACAAARRA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRAVDR Combined Motif Original Motif Reverse Complement HVCAHAMAHDCAAAHRWVHVYVH TGAACKCBWTGACCC HVCAHAMAHDCAAADGAACDCVHTGACCC Direction: Forward Position #: 15 Overlap #: 9 Alignment: HVCAHAMAHDCAAAHRWVHVYVH------ --------------TGAACKCBWTGACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Reverse Complement Reverse Complement GGGTCAHVGHGTTCDTTTGDHTYTHTGBH SSGGGCGGSGGCGSS SSGGGTSRVGGCGBBCDTTTGDHTYTHTGBH Direction: Forward Position #: 3 Overlap #: 13 Alignment: --GGGTCAHVGHGTTCDTTTGDHTYTHTGBH SSGGGCGGSGGCGSS---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Reverse Complement Original Motif HVCAHAMAHDCAAADGVVCGCCVKSACCCSS CACACACACACA CACACACACACAAADGVVCGCCVKSACCCSS Direction: Forward Position #: 1 Overlap #: 12 Alignment: HVCAHAMAHDCAAADGVVCGCCVKSACCCSS CACACACACACA------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Reverse Complement Reverse Complement SSGGGTSRVGGCGBBCDTTTGTGTGTGTGTG TGTGTGTGTGTG TGTGKGTGWGBGCGBBCDTTTGTGTGTGTGTG Direction: Forward Position #: 2 Overlap #: 11 Alignment: -SSGGGTSRVGGCGBBCDTTTGTGTGTGTGTG TGTGTGTGTGTG-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 26 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 yayAyAyACATrya Original Motif Reverse Complement TKKTTTGTTTTTTT DHKATGTKTKTGTD TDKWTKKKTTTKTT Direction: Backward Position #: 1 Overlap #: 14 Alignment: TKKTTTGTTTTTTT DHKATGTKTKTGTD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 27 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Motif 25 Original Motif Original Motif CAYACACACACACA CACACAVRCACACA CACACACACACACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CAYACACACACACA CACACAVRCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Original Motif Original Motif CACACACACACACA HACAYAYACATRHD CACACACACAYACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACACACACACA HACAYAYACATRHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Original Motif CACACACACAYACA CCCCMAAMCAMCCMCMMMCV CMCMMAMACACMCMCMMMCV Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACACACAYACA------ CCCCMAAMCAMCCMCMMMCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Reverse Complement Original Motif BGRRRGYGRGTGTRTRRGRG DHAYAYAYRTGTGTRTDH DBRBABRYRDGTGTRTRDGRG Direction: Forward Position #: 2 Overlap #: 17 Alignment: -BGRRRGYGRGTGTRTRRGRG DHAYAYAYRTGTGTRTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAAAAAAAAAA Combined Motif Reverse Complement Reverse Complement CMCHMAMACACDMMKBTBMVD DVTGCATGCATGBH CMCHHAYRCAYGCATGKHMVD Direction: Forward Position #: 5 Overlap #: 14 Alignment: CMCHMAMACACDMMKBTBMVD ----DVTGCATGCATGBH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Original Motif Reverse Complement CMCHHAYRCAYGCATGKHMVD AAAAAAACAAARRA CMCHHAYRCAYGCATGKAMADAAACAAARRA Direction: Forward Position #: 18 Overlap #: 4 Alignment: CMCHHAYRCAYGCATGKHMVD---------- -----------------AAAAAAACAAARRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Original Motif CMCHHAYRCAYGCATGKAMADAAACAAARRA CACACACACACA CACACAYACAYRCATGKAMADAAACAAARRA Direction: Forward Position #: 1 Overlap #: 12 Alignment: CMCHHAYRCAYGCATGKAMADAAACAAARRA CACACACACACA------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Original Motif CACACAYACAYRCATGKAMADAAACAAARRA CACACACACACA CACACACACACACATGKAMADAAACAAARRA Direction: Forward Position #: 1 Overlap #: 12 Alignment: CACACAYACAYRCATGKAMADAAACAAARRA CACACACACACA------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Reverse Complement CACACACACACACATGKAMADAAACAAARRA VHGARAYAGAVV HASAVACASAHVCATGKAMADAAACAAARRA Direction: Forward Position #: 1 Overlap #: 12 Alignment: CACACACACACACATGKAMADAAACAAARRA VHGARAYAGAVV------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Reverse Complement Original Motif TKKTTTGTTTDTYTRCATGBDTSTGTVTSTD TGYCAGGGGGCR GGGGCRTGTCWGTKKTTTGTTTDTYTRCATGBDTSTG Direction: Backward Position #: 7 Overlap #: 6 Alignment: TKKTTTGTTTDTYTRCATGBDTSTGTVTSTD------ -------------------------TGYCAGGGGGCR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 28 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx ssCGCCsCCrCCCss Original Motif Original Motif BBVGCCBVGGCCTV SSCGCCSCCGCCCSS SBCGCCSMSGCCYVS Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBVGCCBVGGCCTV- SSCGCCSCCGCCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Reverse Complement SVMGGCSRSGGCGBS MSGKKRCGCWDCABTGBBCD VSRGGVCGCKBCVBBGBBCD Direction: Forward Position #: 1 Overlap #: 15 Alignment: SVMGGCSRSGGCGBS----- MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Original Motif VSRGGVCGCKBCVBBGBBCD VHRGGTCABDBTGMCCTB VHVGGKSASGBKGMVCTBBBCD Direction: Forward Position #: 3 Overlap #: 16 Alignment: --VSRGGVCGCKBCVBBGBBCD VHRGGTCABDBTGMCCTB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif VHVGGKSASGBKGMVCTBBBCD VDBHMAGGTCACCCTGACCY VHVGGKSMVRGKKCACYVTGMCCY Direction: Forward Position #: 5 Overlap #: 18 Alignment: VHVGGKSASGBKGMVCTBBBCD-- ----VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Original Motif Reverse Complement VHVGGKSMVRGKKCACYVTGMCCY CKGGDTBDMMCTGG CKVGDKBDVMCDGGKCACYVTGMCCY Direction: Forward Position #: 3 Overlap #: 12 Alignment: --VHVGGKSMVRGKKCACYVTGMCCY CKGGDTBDMMCTGG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfp423 Combined Motif Original Motif Reverse Complement CKVGDKBDVMCDGGKCACYVTGMCCY GYRYCCMTKGGYRSC CKVGRBRBCCCWGGGYRSCVTGMCCY Direction: Forward Position #: 5 Overlap #: 15 Alignment: CKVGDKBDVMCDGGKCACYVTGMCCY ----GYRYCCMTKGGYRSC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Original Motif MGGYCAVGSKKCCCWGGGVMVMCVRG GGGGCCCAAGGGGG GGRGSCCAVGGGGSCCWGGGVMVMCVRG Direction: Forward Position #: 3 Overlap #: 12 Alignment: --MGGYCAVGSKKCCCWGGGVMVMCVRG GGGGCCCAAGGGGG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement GGRGSCCAVGGGGSCCWGGGVMVMCVRG GGYGCTGTCCATGGTGCTGAA GGYGSKGYCCAHGGKGCYSARGGVMVMCVRG Direction: Forward Position #: 4 Overlap #: 18 Alignment: ---GGRGSCCAVGGGGSCCWGGGVMVMCVRG GGYGCTGTCCATGGTGCTGAA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Original Motif GGYGSKGYCCAHGGKGCYSARGGVMVMCVRG HWDAGHACRHHVTGTHCCHVMV GGHDVDGHMCAHBGTGYHCMVGVVMVMCVRG Direction: Forward Position #: 3 Overlap #: 22 Alignment: GGYGSKGYCCAHGGKGCYSARGGVMVMCVRG --HWDAGHACRHHVTGTHCCHVMV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Reverse Complement CKVGRBRVVCBRGHMCACBHTGRHCDVHDCC TGRCCTKTGHCCKAB CKVGRBDGVCCKKTVCMCBHBGRHCDVHDCC Direction: Forward Position #: 7 Overlap #: 15 Alignment: CKVGRBRVVCBRGHMCACBHTGRHCDVHDCC ------TGRCCTKTGHCCKAB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 29 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfp423 Ar Original Motif Original Motif GSMMCCYARGGKKKC HWDAGHACRHHVTGTHCCHVMV HVMVRGMACMYHRKGTDCCHWD Direction: Backward Position #: 5 Overlap #: 15 Alignment: ---GSMMCCYARGGKKKC---- HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif DWHGGDACYMHKRGTYCMVRVD DGVBCABTGDWGCGKRRCSR DRHGSDVCBVWGVGTHVCSRVD Direction: Forward Position #: 1 Overlap #: 20 Alignment: DWHGGDACYMHKRGTYCMVRVD DGVBCABTGDWGCGKRRCSR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement DRHGSDVCBVWGVGTHVCSRVD GGYGCTGTCCATGGTGCTGAA DDHGCTGYCCHKGGTVCYGRVD Direction: Forward Position #: 1 Overlap #: 21 Alignment: DRHGSDVCBVWGVGTHVCSRVD GGYGCTGTCCATGGTGCTGAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Combined Motif Original Motif Reverse Complement DDHGCTGYCCHKGGTVCYGRVD HDAMACACAKKTKTKTHD DDHGVDRYMCABVGTTSTGDVD Direction: Forward Position #: 5 Overlap #: 18 Alignment: DDHGCTGYCCHKGGTVCYGRVD ----HDAMACACAKKTKTKTHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRAVDR Combined Motif Reverse Complement Reverse Complement DBDCASAACBBTGYKKDVCDHH TGAACKCBWTGACCC DBDCASAACBBTGYKGAACKCBWTGACCC Direction: Forward Position #: 15 Overlap #: 8 Alignment: DBDCASAACBBTGYKKDVCDHH------- --------------TGAACKCBWTGACCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Original Motif GGGTCAWBGYGTTCRMCABVGTTSTGDVD GGGGCCCAAGGGGG GGGGYCAWVGGGKKCRMCABVGTTSTGDVD Direction: Forward Position #: 2 Overlap #: 13 Alignment: -GGGTCAWBGYGTTCRMCABVGTTSTGDVD GGGGCCCAAGGGGG---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement DBDCASAACBBTGYKGYYCCCBWTGMCCCC VAGGCCBBGGCVBB DBDCASVASGCYBBKGCBCBCBWTGMCCCC Direction: Forward Position #: 7 Overlap #: 14 Alignment: DBDCASAACBBTGYKGYYCCCBWTGMCCCC ------VAGGCCBBGGCVBB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif DBDCASVASGCYBBKGCBCBCBWTGMCCCC VDBHMAGGTCACCCTGACCY VBDCMVGRKSMCBBTGMCCYCBWTGMCCCC Direction: Forward Position #: 1 Overlap #: 20 Alignment: DBDCASVASGCYBBKGCBCBCBWTGMCCCC VDBHMAGGTCACCCTGACCY---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Original Motif VBDCMVGRKSMCBBTGMCCYCBWTGMCCCC CCCCMAAMCAMCCMCMMMCV VHCCCMRAHCACCCHSMCCCCBWTGMCCCC Direction: Forward Position #: 2 Overlap #: 20 Alignment: VBDCMVGRKSMCBBTGMCCYCBWTGMCCCC -CCCCMAAMCAMCCMCMMMCV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Reverse Complement Reverse Complement GGGGYCAWVGGGGRSHGGGTGDTKYGGGDV BBCGGKGGMGBB GGGGYCVDCGGGGGCGGGGTGDTKYGGGDV Direction: Forward Position #: 7 Overlap #: 12 Alignment: GGGGYCAWVGGGGRSHGGGTGDTKYGGGDV ------BBCGGKGGMGBB------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 30 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ZEB1 RORA_1 Original Motif Reverse Complement CACCTD TGACCTDVWT VWTSACCTDT Direction: Backward Position #: 4 Overlap #: 6 Alignment: -CACCTD--- TGACCTDVWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif VWTSACCTDT TTCAGCACCATGGACAGCKCC TTSAKSACCWDKGACAGCKCC Direction: Forward Position #: 3 Overlap #: 10 Alignment: --VWTSACCTDT--------- TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Original Motif Original Motif TTSAKSACCWDKGACAGCKCC HBCCMCACCHH BBCMVCACCHHKGACAGCKCC Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTSAKSACCWDKGACAGCKCC HBCCMCACCHH---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rrAGGGGGArr Original Motif Reverse Complement BBCMVCACCHHKGACAGCKCC VVTCCCCCTVV HHYCCCMCYHHKGACAGCKCC Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBCMVCACCHHKGACAGCKCC VVTCCCCCTVV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb Combined Motif Reverse Complement Original Motif GGYGCTGTCRDDMGRGGGMDD CACGTG GGYGCTGTCRVACGTGGGMDD Direction: Forward Position #: 11 Overlap #: 6 Alignment: GGYGCTGTCRDDMGRGGGMDD ----------CACGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Arnt Combined Motif Reverse Complement Original Motif HHYCCCACGTVKGACAGCKCC CACGTG HHYCMCGYGTVKGACAGCKCC Direction: Forward Position #: 4 Overlap #: 6 Alignment: HHYCCCACGTVKGACAGCKCC ---CACGTG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 31 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFAP2A Zfx Reverse Complement Original Motif SCMVBBGGC BBVGCCBVGGCCTV TVSCCBVGGSCBBV Direction: Backward Position #: 3 Overlap #: 9 Alignment: ---SCMVBBGGC-- BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGMsGRGCGss Reverse Complement Reverse Complement VBBGSCCVBGGSVA BBCGCCCSGCVV VBCGCCCVGSSVVA Direction: Forward Position #: 1 Overlap #: 12 Alignment: VBBGSCCVBGGSVA BBCGCCCSGCVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Original Motif VBCGCCCVGSSVVA GGGGCCCAAGGGGG GGSGCCCHVGGGGR Direction: Forward Position #: 1 Overlap #: 14 Alignment: VBCGCCCVGSSVVA GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Original Motif Original Motif GGSGCCCHVGGGGR GSMMCCYARGGKKKC GSVVCCYARGGGKDC Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGSGCCCHVGGGGR- GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif GHYCCCKTKGGVVSC VDBHMAGGTCACCCTGACCY RVBCCMGKKSRVVSYGACCY Direction: Forward Position #: 1 Overlap #: 15 Alignment: GHYCCCKTKGGVVSC----- VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Original Motif Reverse Complement RVBCCMGKKSRVVSYGACCY BBCGGKGGMGBB RVBBSCGGKGGCGSBGACCY Direction: Forward Position #: 4 Overlap #: 12 Alignment: RVBCCMGKKSRVVSYGACCY ---BBCGGKGGMGBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sssCGssGCsss Reverse Complement Reverse Complement MGGTCBSCGCCYCCGSBBVM SSSGCSSCGSSS VGGKCSSCGCSBCCGSBBVM Direction: Forward Position #: 1 Overlap #: 12 Alignment: MGGTCBSCGCCYCCGSBBVM SSSGCSSCGSSS-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Reverse Complement VGGKCSSCGCSBCCGSBBVM BAGGYCABHBTGACCKHV VVGGCCVCVSYGMCSKDBVM Direction: Forward Position #: 1 Overlap #: 18 Alignment: VGGKCSSCGCSBCCGSBBVM BAGGYCABHBTGACCKHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Reverse Complement Reverse Complement RVBDYSGYCMSVGBGGCCBV GCCACGTGSD GCCACGKGSVSVGBGGCCBV Direction: Forward Position #: 1 Overlap #: 10 Alignment: RVBDYSGYCMSVGBGGCCBV GCCACGTGSD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif GCCACGKGSVSVGBGGCCBV DGVBCABTGDWGCGKRRCSR GCCABGDBCAVBGDDGCSKRRCSR Direction: Forward Position #: 5 Overlap #: 16 Alignment: GCCACGKGSVSVGBGGCCBV---- ----DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 32 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 ssCGCCsCCrCCCss Reverse Complement Reverse Complement GGGGGYGGGG SSGGGCGGSGGCGSS GCGSSGGGGGYGGGG Direction: Backward Position #: 6 Overlap #: 10 Alignment: GGGGGYGGGG----- SSGGGCGGSGGCGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Original Motif Reverse Complement GCGSSGGGGGYGGGG BBCGGKGGMGBB GCGSCGGGGGCGGGG Direction: Forward Position #: 3 Overlap #: 12 Alignment: GCGSSGGGGGYGGGG --BBCGGKGGMGBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ccCCmCACCcc Combined Motif Original Motif Reverse Complement GCGSCGGGGGCGGGG DDGGTGRGGBD GCGBSGKGGGSGVGG Direction: Forward Position #: 3 Overlap #: 11 Alignment: GCGSCGGGGGCGGGG --DDGGTGRGGBD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Reverse Complement GCGBSGKGGGSGVGG BGRRRGRGGRTGRTTYGGGG GCBGGGKGGGGGTGGTTYGGGG Direction: Forward Position #: 3 Overlap #: 13 Alignment: GCGBSGKGGGSGVGG------- --BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Original Motif GCBGGGKGGGGGTGGTTYGGGG BBVGCCBVGGCCTV SCBGSSBGGGSSTGGTTYGGGG Direction: Forward Position #: 1 Overlap #: 14 Alignment: GCBGGGKGGGGGTGGTTYGGGG BBVGCCBVGGCCTV-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Reverse Complement CCCCMAACCASSCCCBSSCBGS CCCCCTTGGGCCCC CCCCMMMCYWGGSCCCCSCBGS Direction: Forward Position #: 4 Overlap #: 14 Alignment: CCCCMAACCASSCCCBSSCBGS ---CCCCCTTGGGCCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif SCBGSGGGGSCCWKGRRRGGGG BTRGGDCARAGGKCA SCBGSBRGGSCMWDGGDVRGGG Direction: Forward Position #: 5 Overlap #: 15 Alignment: SCBGSGGGGSCCWKGRRRGGGG ----BTRGGDCARAGGKCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Reverse Complement Reverse Complement CCCMVHCCDWYGSCCMBSCBGS GCCYCMCCCD VCCYCMCCCWYGSCCMBSCBGS Direction: Forward Position #: 1 Overlap #: 10 Alignment: CCCMVHCCDWYGSCCMBSCBGS GCCYCMCCCD------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGMsGRGCGss Reverse Complement Original Motif SCBGSBRGGSCMWGGGRGKGGV VVGCSGGGCGBB SVGVSGGGSGSVWGGGRGKGGV Direction: Forward Position #: 1 Overlap #: 12 Alignment: SCBGSBRGGSCMWGGGRGKGGV VVGCSGGGCGBB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rrAGGGGGArr Reverse Complement Reverse Complement VCCYCMCCCWBSCSCCCSVCVS VVTCCCCCTVV VCYCCCCCTDBSCSCCCSVCVS Direction: Forward Position #: 1 Overlap #: 11 Alignment: VCCYCMCCCWBSCSCCCSVCVS VVTCCCCCTVV----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 33 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRAVDR Ar Reverse Complement Original Motif TGAACKCBWTGACCC HWDAGHACRHHVTGTHCCHVMV HVMVDGAACDCBHTGWCCCHWD Direction: Backward Position #: 5 Overlap #: 15 Alignment: ---TGAACKCBWTGACCC---- HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement HVMVDGAACDCBHTGWCCCHWD BAGGYCABHBTGACCKHV HVMVAGRACAHBVTGACCBHDD Direction: Forward Position #: 4 Overlap #: 18 Alignment: HVMVDGAACDCBHTGWCCCHWD ---BAGGYCABHBTGACCKHV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 Combined Motif Reverse Complement Reverse Complement DDHBGGTCAVBDTGTKCTVRVD TGACCTCKVVBTGAYCK DTDDSSTCWVVDTGABCKVRVD Direction: Forward Position #: 2 Overlap #: 17 Alignment: DDHBGGTCAVBDTGTKCTVRVD -TGACCTCKVVBTGAYCK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif HVMVRGVTCAHVVWGASSDHAD VDBHMAGGTCACCCTGACCY VDVMVAGGTCABVVTGACCBHAD Direction: Forward Position #: 2 Overlap #: 19 Alignment: -HVMVRGVTCAHVVWGASSDHAD VDBHMAGGTCACCCTGACCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Original Motif Reverse Complement VDVMVAGGTCABVVTGACCBHAD GYRYCCMTKGGYRSC GYRBCCMWGGKCASCVTGACCBHAD Direction: Forward Position #: 3 Overlap #: 13 Alignment: --VDVMVAGGTCABVVTGACCBHAD GYRYCCMTKGGYRSC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 34 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 ESR1 Reverse Complement Reverse Complement BGRRRGRGGRTGRTTYGGGG MGGTCAGGGTGACCTRDBHV VVGGDSAGGGTGRYYTGGGVB Direction: Backward Position #: 2 Overlap #: 19 Alignment: BGRRRGRGGRTGRTTYGGGG- -MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Reverse Complement BVCCCAKKKCACCCTSDCCVV VRVDGGHACAVDDKGTHCTDWH BVVVVRGDWCAVBBTGTHCBDWH Direction: Forward Position #: 2 Overlap #: 20 Alignment: BVCCCAKKKCACCCTSDCCVV-- -VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement BVVVVRGDWCAVBBTGTHCBDWH BAGGYCABHBTGACCKHV BVVVVAGKHCAVBBTGWCCKDDH Direction: Forward Position #: 5 Overlap #: 18 Alignment: BVVVVRGDWCAVBBTGTHCBDWH ----BAGGYCABHBTGACCKHV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Original Motif BVVVVAGKHCAVBBTGWCCKDDH DGVBCABTGDWGCGKRRCSR DRVBCAGKDMAGCGTGDCCDDDH Direction: Forward Position #: 1 Overlap #: 20 Alignment: BVVVVAGKHCAVBBTGWCCKDDH DGVBCABTGDWGCGKRRCSR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Original Motif Reverse Complement DRVBCAGKDMAGCGTGDCCDDDH SSGGGCGGSGGCGSS SBGGGCRGBGSMGVVTGDCCDDDH Direction: Forward Position #: 2 Overlap #: 14 Alignment: -DRVBCAGKDMAGCGTGDCCDDDH SSGGGCGGSGGCGSS--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Original Motif SBGGGCRGBGSMGVVTGDCCDDDH GGGGCCCAAGGGGG GGGGSCVDVGGGGGVTGDCCDDDH Direction: Forward Position #: 1 Overlap #: 14 Alignment: SBGGGCRGBGSMGVVTGDCCDDDH GGGGCCCAAGGGGG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Original Motif Reverse Complement GGGGSCVDVGGGGGVTGDCCDDDH TGTGTGKVTGTGTG TGKGKSBVTGKGKGGVTGDCCDDDH Direction: Forward Position #: 2 Overlap #: 13 Alignment: -GGGGSCVDVGGGGGVTGDCCDDDH TGTGTGKVTGTGTG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yayAyAyACATrya Combined Motif Reverse Complement Original Motif HDDHGGDCAVCCRCRCAVVSRCRCA HACAYAYACATRHD HDDHGBDCAYMCACAYRBVSRCRCA Direction: Forward Position #: 6 Overlap #: 14 Alignment: HDDHGGDCAVCCRCRCAVVSRCRCA -----HACAYAYACATRHD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Reverse Complement Reverse Complement TGKGKSBBKMTGTGYKTGDBCDDDH TGTGTGTGTGTKTG TGTGTGTGTRTGTGYKTGDBCDDDH Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGKGKSBBKMTGTGYKTGDBCDDDH TGTGTGTGTGTKTG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 Combined Motif Reverse Complement Original Motif HDDHGBDCAYMCACAMACACACACA RGKTCABVVRGAGGTCA HDDVGKTCABVCASAGRYMMACACA Direction: Forward Position #: 4 Overlap #: 17 Alignment: HDDHGBDCAYMCACAMACACACACA ---RGKTCABVVRGAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 35 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Ar Reverse Complement Reverse Complement GGYGCTGTCCATGGTGCTGAA VRVDGGHACAVDDKGTHCTDWH GVHGSTRYMCDDKGTBCTKAHV Direction: Backward Position #: 1 Overlap #: 21 Alignment: -GGYGCTGTCCATGGTGCTGAA VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif VHTYAGBACYDDGRKKASCDVC DGVBCABTGDWGCGKRRCSR VHTYAGVACHVBGRDGMGBDVCSR Direction: Forward Position #: 5 Overlap #: 18 Alignment: VHTYAGBACYDDGRKKASCDVC-- ----DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement VHTYAGVACHVBGRDGMGBDVCSR MGGTCAGGGTGACCTRDBHV VHTMRGHMMVVBKGDSCBBDVCVR Direction: Forward Position #: 4 Overlap #: 20 Alignment: VHTYAGVACHVBGRDGMGBDVCSR ---MGGTCAGGGTGACCTRDBHV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif VHTMRGHMMVVBKGDSCBBDVCVR VHRGGTCABDBTGMCCTB VHDVGKCAVBDTGVHCYBBDVCVR Direction: Forward Position #: 1 Overlap #: 18 Alignment: VHTMRGHMMVVBKGDSCBBDVCVR VHRGGTCABDBTGMCCTB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Reverse Complement VHDVGKCAVBDTGVHCYBBDVCVR TGMYCTTTGBCCK VHDVGKSMHCKTKGBCCBBDVCVR Direction: Forward Position #: 6 Overlap #: 13 Alignment: VHDVGKCAVBDTGVHCYBBDVCVR -----TGMYCTTTGBCCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement VHDVGKSMHCKTKGBCCBBDVCVR TGRCCTKTGHCCKAB VHDVGTGACCTTTGBCCKVVVCVR Direction: Forward Position #: 6 Overlap #: 15 Alignment: VHDVGKSMHCKTKGBCCBBDVCVR -----TGRCCTKTGHCCKAB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Reverse Complement Reverse Complement MVGVVBYGGBCAAAGGTCACVDHV SSGGGCGGSGGCGSS VVGGGHGGGGSMRRGGTCACVDHV Direction: Forward Position #: 1 Overlap #: 15 Alignment: MVGVVBYGGBCAAAGGTCACVDHV SSGGGCGGSGGCGSS--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCTswGCCms Original Motif Reverse Complement VVGGGHGGGGSMRRGGTCACVDHV BDGGCTSAGCBV VVGGCHSRGSBVRRGGTCACVDHV Direction: Forward Position #: 1 Overlap #: 12 Alignment: VVGGGHGGGGSMRRGGTCACVDHV BDGGCTSAGCBV------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Original Motif Reverse Complement VVGGCHSRGSBVRRGGTCACVDHV BBCGGKGGMGBB VVGGCBSMGSBBGMGGBCACVDHV Direction: Forward Position #: 6 Overlap #: 12 Alignment: VVGGCHSRGSBVRRGGTCACVDHV -----BBCGGKGGMGBB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Original Motif Reverse Complement VVGGCBSMGSBBGMGGBCACVDHV CKGGDTBDMMCTGG CDGGBBBVRVCKGGGGBCACVDHV Direction: Forward Position #: 1 Overlap #: 14 Alignment: VVGGCBSMGSBBGMGGBCACVDHV CKGGDTBDMMCTGG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 36 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA NR1H2RXRA Original Motif Original Motif BTRGGDCARAGGKCA AAAGGTCAAAGGTCAAC ACVDRGGTCAAAGGTCA Direction: Backward Position #: 3 Overlap #: 15 Alignment: BTRGGDCARAGGKCA-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Reverse Complement Reverse Complement TGACCTTTGACCKDBGT TGACCTCKVVBTGAYCK TGACCTBTSVCYKAYCT Direction: Forward Position #: 1 Overlap #: 17 Alignment: TGACCTTTGACCKDBGT TGACCTCKVVBTGAYCK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement TGACCTBTSVCYKAYCT BAGGYCABHBTGACCKHV TGASSTCWBVBTGACCKHV Direction: Forward Position #: 2 Overlap #: 16 Alignment: TGACCTBTSVCYKAYCT-- -BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Reverse Complement Reverse Complement VHRGGTCABVBWGASSTCA VRVDGGHACAVDDKGTHCTDWH VDVBGKYACVVDDDGBTCWDWH Direction: Forward Position #: 1 Overlap #: 19 Alignment: VHRGGTCABVBWGASSTCA--- VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Reverse Complement HWDWGAVCDHDVBGTKYCBBDV MSGKKRCGCWDCABTGBBCD MVRDKAMSCHDSHGTGYBCDDV Direction: Forward Position #: 1 Overlap #: 20 Alignment: HWDWGAVCDHDVBGTKYCBBDV MSGKKRCGCWDCABTGBBCD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Reverse Complement VDDGBKCACHSDHGSRTYDMVY MGGTCAGGGTGACCTRDBHV VDDGVGSWCAGDVKGRYCDVVBHV Direction: Forward Position #: 5 Overlap #: 18 Alignment: VDDGBKCACHSDHGSRTYDMVY-- ----MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Reverse Complement VDDGVGSWCAGDVKGRYCDVVBHV BGRRRGRGGRTGRTTYGGGG BGVRRGRGGDYRGBTTGRGVDVVBHV Direction: Forward Position #: 3 Overlap #: 18 Alignment: --VDDGVGSWCAGDVKGRYCDVVBHV BGRRRGRGGRTGRTTYGGGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Original Motif VDBVBDVCMCAAVCMMDCCMCMKVCB TTCAGCACCATGGACAGCKCC VDBCAGSACCAHGGMCASCVCCKVCB Direction: Forward Position #: 2 Overlap #: 21 Alignment: VDBVBDVCMCAAVCMMDCCMCMKVCB -TTCAGCACCATGGACAGCKCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Original Motif VDBCAGSACCAHGGMCASCVCCKVCB TGAMCTTTGMMCYT VDBCAKGAMCHTKGMMHBYVCCKVCB Direction: Forward Position #: 6 Overlap #: 14 Alignment: VDBCAGSACCAHGGMCASCVCCKVCB -----TGAMCTTTGMMCYT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Reverse Complement VDBCAKGAMCHTKGMMHBYVCCKVCB CCCCCTTGGGCCCC VDBCABSMCCTTKGVCCCCVCCKVCB Direction: Forward Position #: 6 Overlap #: 14 Alignment: VDBCAKGAMCHTKGMMHBYVCCKVCB -----CCCCCTTGGGCCCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 37 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Zfp423 Original Motif Original Motif GGGGCCCAAGGGGG GSMMCCYARGGKKKC GGSVCCYARGGGGGC Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGGGCCCAAGGGGG- GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Reverse Complement GGSVCCYARGGGGGC BGRRRGRGGRTGRTTYGGGG GGBGSCHRRGGGKGVTTYGGGG Direction: Forward Position #: 3 Overlap #: 13 Alignment: GGSVCCYARGGGGGC------- --BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Reverse Complement GGBGSCHRRGGGKGVTTYGGGG SSGGGCGGSGGCGSS GGBGSSGGGVGGKGSYKBGGGG Direction: Forward Position #: 5 Overlap #: 15 Alignment: GGBGSCHRRGGGKGVTTYGGGG ----SSGGGCGGSGGCGSS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Original Motif GGBGSSGGGVGGKGSYKBGGGG BTRGGDCARAGGKCA GBVGGBSRRRGGKSRYKBGGGG Direction: Forward Position #: 1 Overlap #: 15 Alignment: GGBGSSGGGVGGKGSYKBGGGG BTRGGDCARAGGKCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif GBVGGBSRRRGGKSRYKBGGGG BBVGCCBVGGCCTV GBVGSBSRVVGRGGCCTBGGGG Direction: Forward Position #: 5 Overlap #: 14 Alignment: GBVGGBSRRRGGKSRYKBGGGG ----BBVGCCBVGGCCTV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Original Motif GBVGSBSRVVGRGGCCTBGGGG CCAGYYHVADCCRG GBVGCCVGBHBVRGCCDGGGGG Direction: Forward Position #: 5 Overlap #: 14 Alignment: GBVGSBSRVVGRGGCCTBGGGG ----CCAGYYHVADCCRG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Original Motif Reverse Complement GBVGCCVGBHBVRGCCDGGGGG TGACCTCKVVBTGAYCK KGASCYVKVVBTGACCKGGGGG Direction: Forward Position #: 1 Overlap #: 17 Alignment: GBVGCCVGBHBVRGCCDGGGGG TGACCTCKVVBTGAYCK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement KGASCYVKVVBTGACCKGGGGG MSGKKRCGCWDCABTGBBCD MSGKKRMGCHDBVVBDBDCBKGGGGG Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----KGASCYVKVVBTGACCKGGGGG MSGKKRCGCWDCABTGBBCD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRAVDR Combined Motif Original Motif Reverse Complement MSGKKRMGCHDBVVBDBDCBKGGGGG TGAACKCBWTGACCC MSGKTGAACKCBHTGACCCBKGGGGG Direction: Forward Position #: 5 Overlap #: 15 Alignment: MSGKKRMGCHDBVVBDBDCBKGGGGG ----TGAACKCBWTGACCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Original Motif MSGKTGAACKCBHTGACCCBKGGGGG RGGBCAAAGKYCA VGGBYRAASKBCATGACCCBKGGGGG Direction: Forward Position #: 1 Overlap #: 13 Alignment: MSGKTGAACKCBHTGACCCBKGGGGG RGGBCAAAGKYCA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 38 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 NR1H2RXRA Original Motif Reverse Complement TGAMCTTTGMMCYT GTTGACCTTTGACCTTT TTGACCTTTGACCTTGT Direction: Backward Position #: 2 Overlap #: 14 Alignment: --TGAMCTTTGMMCYT- GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif ACAAGGTCAAAGGTCAA BTRGGDCARAGGKCA ASDRGGKCAAAGGTCAA Direction: Forward Position #: 2 Overlap #: 15 Alignment: ACAAGGTCAAAGGTCAA -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Original Motif Original Motif ASDRGGKCAAAGGTCAA RGKTCABVVRGAGGTCA RRBTVRDBSARAGGTCAA Direction: Forward Position #: 2 Overlap #: 16 Alignment: -ASDRGGKCAAAGGTCAA RGKTCABVVRGAGGTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Combined Motif Original Motif Original Motif RRBTVRDBSARAGGTCAA DHAYAYAYRTGTGTRTDH RRBDHRBVCAHAKGTSWRTDH Direction: Forward Position #: 4 Overlap #: 15 Alignment: RRBTVRDBSARAGGTCAA--- ---DHAYAYAYRTGTGTRTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif RRBDHRBVCAHAKGTSWRTDH VHRGGTCABDBTGMCCTB RRBDVRGDCABVKKKVHMTVH Direction: Forward Position #: 3 Overlap #: 18 Alignment: RRBDHRBVCAHAKGTSWRTDH --VHRGGTCABDBTGMCCTB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif RRBDVRGDCABVKKKVHMTVH TTCAGCACCATGGACAGCKCC TTCAGCASCDHGGACAGVKBBVHMTVH Direction: Forward Position #: 7 Overlap #: 15 Alignment: ------RRBDVRGDCABVKKKVHMTVH TTCAGCACCATGGACAGCKCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement HVARDVBBYVCTGTCCHDGSTGCTGAA MSGKKRCGCWDCABTGBBCD MVRDKRVBCDBYRDYVHDVVTGCTGAA Direction: Forward Position #: 1 Overlap #: 20 Alignment: HVARDVBBYVCTGTCCHDGSTGCTGAA MSGKKRCGCWDCABTGBBCD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Original Motif MVRDKRVBCDBYRDYVHDVVTGCTGAA RGGBCAAAGKYCA VGRBBAVRSDBYRDYVHDVVTGCTGAA Direction: Forward Position #: 1 Overlap #: 13 Alignment: MVRDKRVBCDBYRDYVHDVVTGCTGAA RGGBCAAAGKYCA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Original Motif VGRBBAVRSDBYRDYVHDVVTGCTGAA BBVGCCBVGGCCTV VBVBSHVVGGCCTBYVHDVVTGCTGAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: VGRBBAVRSDBYRDYVHDVVTGCTGAA BBVGCCBVGGCCTV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement VBVBSHVVGGCCTBYVHDVVTGCTGAA MGGTCAGGGTGACCTRDBHV VGGBCAVVGKSMYCYVBBVVTGCTGAA Direction: Forward Position #: 1 Overlap #: 20 Alignment: VBVBSHVVGGCCTBYVHDVVTGCTGAA MGGTCAGGGTGACCTRDBHV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 39 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MZF1_1-4 rrAGGGGGArr Reverse Complement Reverse Complement TCCCCV VVTCCCCCTVV VVTCCCCCTVV Direction: Forward Position #: 3 Overlap #: 6 Alignment: --TCCCCV--- VVTCCCCCTVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Reverse Complement VVTCCCCCTVV MGCCCCCTGMCA MVYCCCCHKMCA Direction: Forward Position #: 1 Overlap #: 11 Alignment: VVTCCCCCTVV- MGCCCCCTGMCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MZF1_5-13 Original Motif Reverse Complement MVYCCCCHKMCA BTHCCCCTYB HDYCCCCTBVCA Direction: Forward Position #: 1 Overlap #: 10 Alignment: MVYCCCCHKMCA BTHCCCCTYB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Reverse Complement Reverse Complement TGVVAGGGGMDH DDGGTGRGGBD KGGGWGGGGVDH Direction: Forward Position #: 1 Overlap #: 11 Alignment: TGVVAGGGGMDH DDGGTGRGGBD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Original Motif KGGGWGGGGVDH DGGGYGKGGC DGGGYGGGGHDH Direction: Forward Position #: 1 Overlap #: 10 Alignment: KGGGWGGGGVDH DGGGYGKGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Reverse Complement HHDCCCCMCCCD CCCCCTTGGGCCCC CCCCCTWVGSCCCCCCCD Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------HHDCCCCMCCCD CCCCCTTGGGCCCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 24 Original Motif Reverse Complement CCCCCTWVGSCCCCCCCD TCCCAG YCCCMKWVGSCCCCCCCD Direction: Forward Position #: 1 Overlap #: 6 Alignment: CCCCCTWVGSCCCCCCCD TCCCAG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Reverse Complement Reverse Complement DGGGGGGGSCVWYRGGGM GGGGGYGGGG KGGGGGGGGSVWYRGGGM Direction: Forward Position #: 1 Overlap #: 10 Alignment: DGGGGGGGSCVWYRGGGM GGGGGYGGGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Original Motif Reverse Complement KGGGGGGGGSVWYRGGGM SSGGGCGGSGGCGSS BGGGGBGGSGSMSGGGGM Direction: Forward Position #: 1 Overlap #: 15 Alignment: KGGGGGGGGSVWYRGGGM SSGGGCGGSGGCGSS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Original Motif YCCCCSRSCSCCBCCCCB CCCCMAAMCAMCCMCMMMCV CCCCMMAMCMCCVCCCCCCV Direction: Forward Position #: 1 Overlap #: 18 Alignment: YCCCCSRSCSCCBCCCCB-- CCCCMAAMCAMCCMCMMMCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 40 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar REST Reverse Complement Reverse Complement VRVDGGHACAVDDKGTHCTDWH GGYGCTGTCCATGGTGCTGAA GVHGSTRYMCDDKGTBCTKAHV Direction: Backward Position #: 1 Overlap #: 21 Alignment: VRVDGGHACAVDDKGTHCTDWH -GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement VHTYAGBACYDDGRKKASCDVC MSGKKRCGCWDCABTGBBCD MVKBDGCRCHDBRGKKHBCDVC Direction: Forward Position #: 1 Overlap #: 20 Alignment: VHTYAGBACYDDGRKKASCDVC MSGKKRCGCWDCABTGBBCD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement MVKBDGCRCHDBRGKKHBCDVC MGGTCAGGGTGACCTRDBHV MGGTCAGBDKSACCDVVVBBHBCDVC Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----MVKBDGCRCHDBRGKKHBCDVC MGGTCAGGGTGACCTRDBHV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Reverse Complement MGGTCAGBDKSACCDVVVBBHBCDVC BGRRRGRGGRTGRTTYGGGG BVGGDSRGGRTGRYYTGGGDBHBCDVC Direction: Forward Position #: 2 Overlap #: 19 Alignment: -MGGTCAGBDKSACCDVVVBBHBCDVC BGRRRGRGGRTGRTTYGGGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Combined Motif Reverse Complement Reverse Complement GVHGBHBHCCCAMKKCAMCCKSDCCVB HDAMACACAKKTKTKTHD GVHGBHBMCMCAMDKBWBYBKVDCCVB Direction: Forward Position #: 6 Overlap #: 18 Alignment: GVHGBHBHCCCAMKKCAMCCKSDCCVB -----HDAMACACAKKTKTKTHD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Original Motif BVGGDVRBMBWBRHRTGYGYVHBCDVC BTRGGDCARAGGKCA BBRGGVVAAVRGDHRTGYGYVHBCDVC Direction: Forward Position #: 1 Overlap #: 15 Alignment: BVGGDVRBMBWBRHRTGYGYVHBCDVC BTRGGDCARAGGKCA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Reverse Complement Original Motif GVHGBHBMCMCAKDHCMBTTVVCCMVB HACAYAYACATRHD DVYRYAYACAYABDHCMBTTVVCCMVB Direction: Forward Position #: 1 Overlap #: 14 Alignment: GVHGBHBMCMCAKDHCMBTTVVCCMVB HACAYAYACATRHD------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Original Motif BBRGGVVAAVRGDHVTMTGTMTKKKBH VHRGGTCABDBTGMCCTB BHRGGDCAVVDKGHMYHBGTMTKKKBH Direction: Forward Position #: 1 Overlap #: 18 Alignment: BBRGGVVAAVRGDHVTMTGTMTKKKBH VHRGGTCABDBTGMCCTB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCwGGCCwGCss Original Motif Original Motif BHRGGDCAVVDKGHMYHBGTMTKKKBH BBCWGGCCAGCBB BHCKGKCMHGBBDHMYHBGTMTKKKBH Direction: Forward Position #: 1 Overlap #: 13 Alignment: BHRGGDCAVVDKGHMYHBGTMTKKKBH BBCWGGCCAGCBB-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Reverse Complement Original Motif DVYRYAYACVHKRHHVBCHRGYCYGHB RGGBCAAAGKYCA DGBVCAHASDHBRHHVBCHRGYCYGHB Direction: Forward Position #: 1 Overlap #: 13 Alignment: DVYRYAYACVHKRHHVBCHRGYCYGHB RGGBCAAAGKYCA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 41 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Arnt Esrrb Original Motif Original Motif CACGTG CACGTG CACGTG Direction: Backward Position #: 1 Overlap #: 6 Alignment: CACGTG CACGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MYCMAX Reverse Complement Reverse Complement CACGTG ACCACGTGSTM ACCACGTGSTM Direction: Forward Position #: 3 Overlap #: 6 Alignment: --CACGTG--- ACCACGTGSTM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement ACCACGTGSTM DCCACGTGCV DCCACGTGSDM Direction: Forward Position #: 1 Overlap #: 10 Alignment: ACCACGTGSTM DCCACGTGCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement DCCACGTGSDM GCCACGTGSD DCCACGTGSDM Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCACGTGSDM GCCACGTGSD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HIF1AARNT Reverse Complement Original Motif RHSCACGTGGH VBACGTGV VBRCRYGYGGH Direction: Forward Position #: 1 Overlap #: 8 Alignment: RHSCACGTGGH VBACGTGV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ArntAhr Reverse Complement Reverse Complement DCCMCMMGKBV CACGCM CMCGCMMGKBV Direction: Forward Position #: 1 Overlap #: 6 Alignment: DCCMCMMGKBV CACGCM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ZEB1 Combined Motif Reverse Complement Reverse Complement VBRCRYGCGYG HAGGTG VHASGTGCGYG Direction: Forward Position #: 2 Overlap #: 6 Alignment: VBRCRYGCGYG -HAGGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Original Motif VHASGTGCGYG HGCGTGGGCGK HGCRBGKGCGBG Direction: Forward Position #: 2 Overlap #: 10 Alignment: -VHASGTGCGYG HGCGTGGGCGK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Original Motif Original Motif HGCRBGKGCGBG DHAYAYAYRTGTGTRTDH DHRYRYRBGYGTGTRTDH Direction: Forward Position #: 2 Overlap #: 12 Alignment: -HGCRBGKGCGBG----- DHAYAYAYRTGTGTRTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Reverse Complement Original Motif HDAMACACKCVKKKKKHD BAACGTCCGC HDACRYMCGCVKKKKKHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HDAMACACKCVKKKKKHD BAACGTCCGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 42 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ArntAhr Egr1 Original Motif Original Motif YGCGTG HGCGTGGGCGK YGCGTGGGCGK Direction: Forward Position #: 1 Overlap #: 6 Alignment: YGCGTG----- HGCGTGGGCGK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HIF1AARNT Original Motif Original Motif YGCGTGGGCGK VBACGTGV VBRCGTGGGCGK Direction: Forward Position #: 2 Overlap #: 7 Alignment: -YGCGTGGGCGK VBACGTGV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Reverse Complement VBRCGTGGGCGK TGTGTGTGTGTKTG TGTGYGTGKGYGTG Direction: Forward Position #: 2 Overlap #: 12 Alignment: -VBRCGTGGGCGK- TGTGTGTGTGTKTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Reverse Complement Reverse Complement CACMCRCACMCACA CACGTG CACGYRCACMCACA Direction: Forward Position #: 1 Overlap #: 6 Alignment: CACMCRCACMCACA CACGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Arnt Original Motif Reverse Complement CACGYRCACMCACA CACGTG CACGTGCACMCACA Direction: Forward Position #: 1 Overlap #: 6 Alignment: CACGYRCACMCACA CACGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Original Motif CACGTGCACMCACA CACACACACACA CACRYRCACACACA Direction: Forward Position #: 1 Overlap #: 12 Alignment: CACGTGCACMCACA CACACACACACA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Reverse Complement Reverse Complement TGTGTGTGKKKGTG TGTGTGKVTGTGTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGTGTGTGKKKGTG TGTGTGKVTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Original Motif CACACACACACACA HVCATGCATGCABD CACAYRCAYRCACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACACACACACA HVCATGCATGCABD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Original Motif CACAYRCAYRCACA CACACACACACA CACAYACACACACA Direction: Forward Position #: 1 Overlap #: 12 Alignment: CACAYRCAYRCACA CACACACACACA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MYCMAX Combined Motif Reverse Complement Original Motif TGTGTGTGTKTGTG RASCACGTGGT TGTKTGTGYGTGKKTGTGTGTG Direction: Backward Position #: 9 Overlap #: 6 Alignment: -----TGTGTGTGTKTGTG --------RASCACGTGGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 43 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- E2F1 PLAG1 Original Motif Reverse Complement TTTSGCGC CCCCCTTGGGCCCC CYYYSKYGSGCCCC Direction: Forward Position #: 2 Overlap #: 8 Alignment: -TTTSGCGC----- CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Original Motif GGGGCSCKYSKKMG BTRGGDCARAGGKCA BGRGGSSMRVGGKMR Direction: Forward Position #: 2 Overlap #: 14 Alignment: -GGGGCSCKYSKKMG BTRGGDCARAGGKCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Reverse Complement Reverse Complement MRRCCBMYSSCCMCB TGMYCTTTGBCCK HGRYCTHTGBCCBCB Direction: Forward Position #: 1 Overlap #: 13 Alignment: MRRCCBMYSSCCMCB TGMYCTTTGBCCK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif BGBGGBCAHAGKKCH AAAGGTCAAAGGTCAAC VRRGGTCAAAGGTCAAC Direction: Forward Position #: 1 Overlap #: 15 Alignment: BGBGGBCAHAGKKCH-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Reverse Complement VRRGGTCAAAGGTCAAC AKGYYCAAAGRTCA VRDGBTCAAAGGTCAAC Direction: Forward Position #: 2 Overlap #: 14 Alignment: VRRGGTCAAAGGTCAAC -AKGYYCAAAGRTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfp423 Combined Motif Reverse Complement Reverse Complement GTTGACCTTTGABCHKB GYRYCCMTKGGYRSC GTTGACCTDTGHCCMTKGGYRSC Direction: Forward Position #: 9 Overlap #: 9 Alignment: GTTGACCTTTGABCHKB------ --------GYRYCCMTKGGYRSC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tyTCTkTkTCyy Combined Motif Original Motif Original Motif GTTGACCTDTGHCCMTKGGYRSC BBTCTKTKTCHB GTTGHYCTKTKTCCHTKGGYRSC Direction: Forward Position #: 4 Overlap #: 12 Alignment: GTTGACCTDTGHCCMTKGGYRSC ---BBTCTKTKTCHB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sssCGssGCsss Reverse Complement Original Motif GSMMCCRADGGAYAYAGMHCAAC SSSCGSSGCSSS SGSCVCCGMVGGAYAYAGMHCAAC Direction: Forward Position #: 2 Overlap #: 11 Alignment: -GSMMCCRADGGAYAYAGMHCAAC SSSCGSSGCSSS------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGMsGRGCGss Original Motif Original Motif SGSCVCCGMVGGAYAYAGMHCAAC VVGCSGGGCGBB VVGCSSSGCGBGAYAYAGMHCAAC Direction: Forward Position #: 1 Overlap #: 12 Alignment: SGSCVCCGMVGGAYAYAGMHCAAC VVGCSGGGCGBB------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- aaACAAAACaa Combined Motif Reverse Complement Reverse Complement GTTGHYCTKTKTCBCGCSSSGCVV TTGTTTTGTTT GTTGTTYTGTKTCBCGCSSSGCVV Direction: Forward Position #: 2 Overlap #: 11 Alignment: GTTGHYCTKTKTCBCGCSSSGCVV -TTGTTTTGTTT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 44 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 ssCrCYyYCGss Original Motif Reverse Complement HGCGTGGGCGK BBCGGKGGMGBB BGCGKGGGCGKB Direction: Forward Position #: 1 Overlap #: 11 Alignment: HGCGTGGGCGK- BBCGGKGGMGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Reverse Complement BGCGKGGGCGKB SSGGGCGGSGGCGSS BGCGGGBGVGGGCGSS Direction: Forward Position #: 2 Overlap #: 11 Alignment: BGCGKGGGCGKB---- -SSGGGCGGSGGCGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Reverse Complement Original Motif SSCGCCCVCBCCCGCV CCCCMAAMCAMCCMCMMMCV CCCCRMMCCMCCCCSHVMCV Direction: Forward Position #: 2 Overlap #: 16 Alignment: -SSCGCCCVCBCCCGCV--- CCCCMAAMCAMCCMCMMMCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACACACACACA Combined Motif Original Motif Original Motif CCCCRMMCCMCCCCSHVMCV CACACACACACA CCMCACACMCACMCSHVMCV Direction: Forward Position #: 2 Overlap #: 12 Alignment: CCCCRMMCCMCCCCSHVMCV -CACACACACACA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Original Motif CCMCACACMCACMCSHVMCV CACACACACACA CMCACACACACACMCSHVMCV Direction: Forward Position #: 2 Overlap #: 11 Alignment: -CCMCACACMCACMCSHVMCV CACACACACACA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Original Motif CMCACACACACACMCSHVMCV CAYACACACACACA CACACACACACACACSHVMCV Direction: Forward Position #: 1 Overlap #: 14 Alignment: CMCACACACACACMCSHVMCV CAYACACACACACA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Reverse Complement Reverse Complement BGRVDSGTGTGTGTGTGTGTG DDGGTGRGGBD BGGGTGGKGDGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 11 Alignment: BGRVDSGTGTGTGTGTGTGTG DDGGTGRGGBD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGMsGRGCGss Original Motif Original Motif BGGGTGGKGDGTGTGTGTGTG VVGCSGGGCGBB BVGVBGGGSGVBGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: BGGGTGGKGDGTGTGTGTGTG VVGCSGGGCGBB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Reverse Complement Original Motif CACACACACVVCSCCCBVCVB CACACAVRCACACA CACACACACACMCMCCBVCVB Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACACACVVCSCCCBVCVB CACACAVRCACACA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfp423 Combined Motif Original Motif Original Motif CACACACACACMCMCCBVCVB GSMMCCYARGGKKKC CACACACACACVSMMCCBMVGGKKKC Direction: Forward Position #: 12 Overlap #: 10 Alignment: CACACACACACMCMCCBVCVB----- -----------GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 45 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Pax5 Reverse Complement Reverse Complement MGGTCAGGGTGACCTRDBHV MSGKKRCGCWDCABTGBBCD MGGTBAVGCTKVMCTGBBMD Direction: Backward Position #: 1 Overlap #: 20 Alignment: MGGTCAGGGTGACCTRDBHV MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Reverse Complement MGGTBAVGCTKVMCTGBBMD VRVDGGHACAVDDKGTHCTDWH MGGTBRVDSKDACVBDBKGTHCTDWH Direction: Forward Position #: 5 Overlap #: 16 Alignment: MGGTBAVGCTKVMCTGBBMD------ ----VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Reverse Complement Original Motif HWDAGHACRBHVBGTDYSHVKBACCY CCCCMAAMCAMCCMCMMMCV CCHCARAMCAHCMHSHVCSVVKBACCY Direction: Forward Position #: 2 Overlap #: 19 Alignment: -HWDAGHACRBHVBGTDYSHVKBACCY CCCCMAAMCAMCCMCMMMCV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement CCHCARAMCAHCMHSHVCSVVKBACCY BAGGYCABHBTGACCKHV CCHCAVAVSHCMHHVTGMCCBTVACCY Direction: Forward Position #: 6 Overlap #: 18 Alignment: CCHCARAMCAHCMHSHVCSVVKBACCY -----BAGGYCABHBTGACCKHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Reverse Complement Original Motif MGGTVABGGYCAVDDYGHSVTVTGDGG RGKTCABVVRGAGGTCA AGGTCABVGDSAGGKCRHSVTVTGDGG Direction: Forward Position #: 1 Overlap #: 17 Alignment: MGGTVABGGYCAVDDYGHSVTVTGDGG RGKTCABVVRGAGGTCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif AGGTCABVGDSAGGKCRHSVTVTGDGG TTCAGCACCATGGACAGCKCC TTCAGSRYCAHGGACAGBKCVHSVTVTGDGG Direction: Forward Position #: 5 Overlap #: 17 Alignment: ----AGGTCABVGDSAGGKCRHSVTVTGDGG TTCAGCACCATGGACAGCKCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRAVDR Combined Motif Original Motif Original Motif TTCAGSRYCAHGGACAGBKCVHSVTVTGDGG GGGTCAWBGRGTTCA TTCAGGGTCAHVGRGWKCDCVHSVTVTGDGG Direction: Forward Position #: 5 Overlap #: 15 Alignment: TTCAGSRYCAHGGACAGBKCVHSVTVTGDGG ----GGGTCAWBGRGTTCA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif CCHCAVAVSHVGDGRWCKCVHTGACCCTGAA BTRGGDCARAGGKCA CCHCAVVDVDGGBRRASKBCATGACCCTGAA Direction: Forward Position #: 7 Overlap #: 15 Alignment: CCHCAVAVSHVGDGRWCKCVHTGACCCTGAA ------BTRGGDCARAGGKCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Reverse Complement Original Motif TTCAGGGTCATGBYSTKKBCCHVDBVTGDGG SSCGCCSCCGCCCSS TTCAGGVYCRYSSCCDYYCBCHVDBVTGDGG Direction: Forward Position #: 7 Overlap #: 15 Alignment: TTCAGGGTCATGBYSTKKBCCHVDBVTGDGG ------SSCGCCSCCGCCCSS---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Original Motif TTCAGGVYCRYSSCCDYYCBCHVDBVTGDGG HVCATGCATGCABD BDCAKGCHYRCMBHCDYYCBCHVDBVTGDGG Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTCAGGVYCRYSSCCDYYCBCHVDBVTGDGG HVCATGCATGCABD----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 46 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Ar Reverse Complement Original Motif BAGGYCABHBTGACCKHV HWDAGHACRHHVTGTHCCHVMV HWHAGDWCAHHVTGWCCBHVMV Direction: Forward Position #: 3 Overlap #: 18 Alignment: --BAGGYCABHBTGACCKHV-- HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif VRVHBGGWCAVDDTGWHCTHWH DGVBCABTGDWGCGKRRCSR DRVDBRVTSADGBKGDVCBDWH Direction: Forward Position #: 1 Overlap #: 20 Alignment: VRVHBGGWCAVDDTGWHCTHWH DGVBCABTGDWGCGKRRCSR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Reverse Complement DRVDBRVTSADGBKGDVCBDWH BGRRRGRGGRTGRTTYGGGG BGRDRGDVGRTGRHKYGGGRCBDWH Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---DRVDBRVTSADGBKGDVCBDWH BGRRRGRGGRTGRTTYGGGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif HWHVGMCCCMRHKCAMCVHCMHMCB TTCAGCACCATGGACAGCKCC HTCAGCACCHDGGMMASCDCCHMCB Direction: Forward Position #: 1 Overlap #: 21 Alignment: HWHVGMCCCMRHKCAMCVHCMHMCB TTCAGCACCATGGACAGCKCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement HTCAGCACCHDGGMMASCDCCHMCB MGGTCAGGGTGACCTRDBHV HTCAGSHCMVDGKVMMCBDVVHMCB Direction: Forward Position #: 4 Overlap #: 20 Alignment: HTCAGCACCHDGGMMASCDCCHMCB ---MGGTCAGGGTGACCTRDBHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Reverse Complement Reverse Complement BGRDVVHVGRYVRCHVYGHSCTGAH TGACCTCKVVBTGAYCK TBRBCBVBVSDTSACCBYGHSCTGAH Direction: Forward Position #: 2 Overlap #: 16 Alignment: -BGRDVVHVGRYVRCHVYGHSCTGAH TGACCTCKVVBTGAYCK--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Reverse Complement HTCAGSHCMBGGTSAHSVVVVGBKBA TGRCCTKTGHCCKAB HTCAGBBMCCKKTSHCCDVVVGBKBA Direction: Forward Position #: 6 Overlap #: 15 Alignment: HTCAGSHCMBGGTSAHSVVVVGBKBA -----TGRCCTKTGHCCKAB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Original Motif HTCAGBBMCCKKTSHCCDVVVGBKBA SSCGCCSCCGCCCSS HTCAGBBCVCBBYCVCCBVVVGBKBA Direction: Forward Position #: 6 Overlap #: 15 Alignment: HTCAGBBMCCKKTSHCCDVVVGBKBA -----SSCGCCSCCGCCCSS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif HTCAGBBCVCBBYCVCCBVVVGBKBA BBVGCCBVGGCCTV HTCAGBBCVCCBHSGCCTVVVGBKBA Direction: Forward Position #: 6 Overlap #: 14 Alignment: HTCAGBBCVCBBYCVCCBVVVGBKBA -----BBVGCCBVGGCCTV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Original Motif HTCAGBBCVCCBHSGCCTVVVGBKBA TGAMCTTTGMMCYT HTCAGTGAVCYTTGRCCYBVVGBKBA Direction: Forward Position #: 6 Overlap #: 14 Alignment: HTCAGBBCVCCBHSGCCTVVVGBKBA -----TGAMCTTTGMMCYT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 47 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb Arnt Original Motif Original Motif CACGTG CACGTG CACGTG Direction: Forward Position #: 1 Overlap #: 6 Alignment: CACGTG CACGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MYCMAX Reverse Complement Reverse Complement CACGTG ACCACGTGSTM ACCACGTGSTM Direction: Forward Position #: 3 Overlap #: 6 Alignment: --CACGTG--- ACCACGTGSTM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement ACCACGTGSTM DCCACGTGCV DCCACGTGSDM Direction: Forward Position #: 1 Overlap #: 10 Alignment: ACCACGTGSTM DCCACGTGCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement DCCACGTGSDM GCCACGTGSD DCCACGTGSDM Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCACGTGSDM GCCACGTGSD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HIF1AARNT Reverse Complement Original Motif RHSCACGTGGH VBACGTGV VBRCRYGYGGH Direction: Forward Position #: 1 Overlap #: 8 Alignment: RHSCACGTGGH VBACGTGV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ArntAhr Reverse Complement Reverse Complement DCCMCMMGKBV CACGCM CMCGCMMGKBV Direction: Forward Position #: 1 Overlap #: 6 Alignment: DCCMCMMGKBV CACGCM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ZEB1 Combined Motif Reverse Complement Reverse Complement VBRCRYGCGYG HAGGTG VHASGTGCGYG Direction: Forward Position #: 2 Overlap #: 6 Alignment: VBRCRYGCGYG -HAGGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Original Motif VHASGTGCGYG HGCGTGGGCGK HGCRBGKGCGBG Direction: Forward Position #: 2 Overlap #: 10 Alignment: -VHASGTGCGYG HGCGTGGGCGK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Original Motif Original Motif HGCRBGKGCGBG DHAYAYAYRTGTGTRTDH DHRYRYRBGYGTGTRTDH Direction: Forward Position #: 2 Overlap #: 12 Alignment: -HGCRBGKGCGBG----- DHAYAYAYRTGTGTRTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Reverse Complement Original Motif HDAMACACKCVKKKKKHD BAACGTCCGC HDACRYMCGCVKKKKKHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HDAMACACKCVKKKKKHD BAACGTCCGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 48 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- EWSR1-FLI1 NR1H2RXRA Original Motif Original Motif GGAAGGAAGGAAGGAAGG AAAGGTCAAAGGTCAAC TCAACRAAGGWMRRARGGGAAGG Direction: Backward Position #: 6 Overlap #: 12 Alignment: GGAAGGAAGGAAGGAAGG----- ------AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Original Motif Reverse Complement TCAACRAAGGWMRRARGGGAAGG AAAAAAACAAARRA TMAAVAAAGRAARRARGGGAAGG Direction: Forward Position #: 2 Overlap #: 14 Alignment: TCAACRAAGGWMRRARGGGAAGG -AAAAAAACAAARRA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Reverse Complement TMAAVAAAGRAARRARGGGAAGG BGRRRGRGGRTGRTTYGGGG TMAAVAAAGRHVRRARGGGAWGGTTYGGGG Direction: Forward Position #: 11 Overlap #: 13 Alignment: TMAAVAAAGRAARRARGGGAAGG------- ----------BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Reverse Complement Original Motif CCCCMAACCWTCCCMTMMBHKCTTTBTTRA CCCCKCCCCC CCCCVMMCCHTCCCMTMMBHKCTTTBTTRA Direction: Forward Position #: 1 Overlap #: 10 Alignment: CCCCMAACCWTCCCMTMMBHKCTTTBTTRA CCCCKCCCCC-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- rrAGGGGGArr Combined Motif Original Motif Reverse Complement CCCCVMMCCHTCCCMTMMBHKCTTTBTTRA VVTCCCCCTVV CCCCVMMCYCYCCCYBMMBHKCTTTBTTRA Direction: Forward Position #: 7 Overlap #: 11 Alignment: CCCCVMMCCHTCCCMTMMBHKCTTTBTTRA ------VVTCCCCCTVV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Combined Motif Reverse Complement Original Motif TMAAVAAAGRHVRRVMGGGKGMGRRBGGGG GAGRCAGR TMRAGRMAGRHVRRVMGGGKGMGRRBGGGG Direction: Forward Position #: 3 Overlap #: 8 Alignment: TMAAVAAAGRHVRRVMGGGKGMGRRBGGGG --GAGRCAGR-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Reverse Complement Original Motif CCCCVMMCYCYCCCYBMMBHMCTRKCTMRA CYBCCTCC CCCCCTCCYCYCCCYBMMBHMCTRKCTMRA Direction: Forward Position #: 1 Overlap #: 8 Alignment: CCCCVMMCYCYCCCYBMMBHMCTRKCTMRA CYBCCTCC---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dwCTTTTCwy Combined Motif Reverse Complement Reverse Complement TMRAGRMAGRHVRRVMGGGKGMGGAGGGGG DHGAAAAGHD TVVRAAAAGDDVRRVMGGGKGMGGAGGGGG Direction: Forward Position #: 2 Overlap #: 10 Alignment: TMRAGRMAGRHVRRVMGGGKGMGGAGGGGG -DHGAAAAGHD------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif TVVRAAAAGDDVRRVMGGGKGMGGAGGGGG ASASAGAA TVVAVAVAGAAVRRVMGGGKGMGGAGGGGG Direction: Forward Position #: 4 Overlap #: 8 Alignment: TVVRAAAAGDDVRRVMGGGKGMGGAGGGGG ---ASASAGAA------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement CCCCCTCCYCYCCCYBMMBTTCTVTVTBVA WTCCCAGC CCCCHTCCCMGCCCYBMMBTTCTVTVTBVA Direction: Forward Position #: 5 Overlap #: 8 Alignment: CCCCCTCCYCYCCCYBMMBTTCTVTVTBVA ----WTCCCAGC------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 49 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIF1AARNT Mycn Original Motif Reverse Complement VBACGTGV GCCACGTGSD DSCACGTGSG Direction: Backward Position #: 2 Overlap #: 8 Alignment: -VBACGTGV- GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Reverse Complement Original Motif CSCACGTGSH VGCACGTGGH CSCACGTGGH Direction: Forward Position #: 1 Overlap #: 10 Alignment: CSCACGTGSH VGCACGTGGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MYCMAX Reverse Complement Reverse Complement DCCACGTGSG ACCACGTGSTM VCCACGTGSKM Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCACGTGSG- ACCACGTGSTM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Reverse Complement Reverse Complement RRSCACGTGGB GCGGACGTTV GCGSACGTKGB Direction: Forward Position #: 1 Overlap #: 10 Alignment: RRSCACGTGGB GCGGACGTTV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Reverse Complement Reverse Complement VCYACGTSCGC VRVDGGHACAVDDKGTHCTDWH VVHASGTVCVVDDKGTHCTDWH Direction: Forward Position #: 1 Overlap #: 11 Alignment: VCYACGTSCGC----------- VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Original Motif Original Motif VVHASGTVCVVDDKGTHCTDWH HACAYAYACATRHD HVYAYRYACAYRBDGTHCTDWH Direction: Forward Position #: 1 Overlap #: 14 Alignment: VVHASGTVCVVDDKGTHCTDWH HACAYAYACATRHD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Original Motif Original Motif HVYAYRYACAYRBDGTHCTDWH HVCCAGTGCABD HVCMHGTRCABDBDGTHCTDWH Direction: Forward Position #: 1 Overlap #: 12 Alignment: HVYAYRYACAYRBDGTHCTDWH HVCCAGTGCABD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif HWDAGHACDVHVTGMACHRGBD DGVBCABTGDWGCGKRRCSR DDDDSAACDDHGYGHAVCVGBD Direction: Forward Position #: 1 Overlap #: 20 Alignment: HWDAGHACDVHVTGMACHRGBD DGVBCABTGDWGCGKRRCSR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Reverse Complement DDDDSAACDDHGYGHAVCVGBD BGRRRGRGGRTGRTTYGGGG DDHVGVDSRRGGTGDHHYGGGG Direction: Forward Position #: 3 Overlap #: 20 Alignment: DDDDSAACDDHGYGHAVCVGBD --BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAAAAAAAAAA Combined Motif Original Motif Reverse Complement DDHVGVDSRRGGTGDHHYGGGG DVTGCATGCATGBH DDDVKGMVKGVRTGDHHYGGGG Direction: Forward Position #: 3 Overlap #: 14 Alignment: DDHVGVDSRRGGTGDHHYGGGG --DVTGCATGCATGBH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 50 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A PPARGRXRA Reverse Complement Reverse Complement TGMYCTTTGBCCK TGRCCTKTGHCCKAB ABTGACCTTTGBCCK Direction: Backward Position #: 3 Overlap #: 13 Alignment: TGMYCTTTGBCCK-- TGRCCTKTGHCCKAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Reverse Complement RGGBCAAAGGTCABT AKGYYCAAAGRTCA ARGBBCAAAGGTCABT Direction: Forward Position #: 2 Overlap #: 13 Alignment: -RGGBCAAAGGTCABT AKGYYCAAAGRTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Reverse Complement ABTGACCTTTGVBCMT GTTGACCTTTGACCTTT VBTGACCTTTGACCHTT Direction: Forward Position #: 1 Overlap #: 16 Alignment: ABTGACCTTTGVBCMT- GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Reverse Complement Original Motif AAHGGTCAAAGGTCAVV RGKTCABVVRGAGGTCA RGDWCRBBCARAGGTCAVV Direction: Forward Position #: 3 Overlap #: 15 Alignment: --AAHGGTCAAAGGTCAVV RGKTCABVVRGAGGTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif VBTGACCTKTGVBKGWDCK DGVBCABTGDWGCGKRRCSR VBTGABCWBTGVHGVRKCDCSR Direction: Forward Position #: 3 Overlap #: 17 Alignment: VBTGACCTKTGVBKGWDCK--- --DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Original Motif VBTGABCWBTGVHGVRKCDCSR VHRGGTCABDBTGMCCTB VHDGRTCABBGDDDCVTVDCSR Direction: Forward Position #: 1 Overlap #: 18 Alignment: VBTGABCWBTGVHGVRKCDCSR VHRGGTCABDBTGMCCTB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Original Motif Original Motif VHDGRTCABBGDDDCVTVDCSR HWDAGHACRHHVTGTHCCHVMV HWDVGDRCDCHVTGTDCCVDVVCSR Direction: Forward Position #: 4 Overlap #: 19 Alignment: ---VHDGRTCABBGDDDCVTVDCSR HWDAGHACRHHVTGTHCCHVMV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement HWDVGDRCDCHVTGTDCCVDVVCSR MGGTCAGGGTGACCTRDBHV HWDVGHRGHCAVBGTGVCCTVBCVV Direction: Forward Position #: 6 Overlap #: 20 Alignment: HWDVGDRCDCHVTGTDCCVDVVCSR -----MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Reverse Complement VVGBVAGGBCACBVTGHCMHCBDWH CCCCCTTGGGCCCC CCCCCBWGGSCMCCVTGHCMHCBDWH Direction: Forward Position #: 2 Overlap #: 13 Alignment: -VVGBVAGGBCACBVTGHCMHCBDWH CCCCCTTGGGCCCC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yayAyAyACATrya Combined Motif Reverse Complement Original Motif HWDVGHRGHCAVGGRGSCCWVGGGGG HACAYAYACATRHD HHDHAHRBWCATGBRGSCCWVGGGGG Direction: Forward Position #: 2 Overlap #: 14 Alignment: HWDVGHRGHCAVGGRGSCCWVGGGGG -HACAYAYACATRHD----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 51 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- INSM1 PPARGRXRA Original Motif Original Motif TGYCAGGGGGCR BTRGGDCARAGGKCA BTRKGBCAGRGGKCA Direction: Forward Position #: 4 Overlap #: 12 Alignment: ---TGYCAGGGGGCR BTRGGDCARAGGKCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Reverse Complement BTRKGBCAGRGGKCA SSGGGCGGSGGCGSS BTVKGGSMGGGGGCGSS Direction: Forward Position #: 3 Overlap #: 13 Alignment: BTRKGBCAGRGGKCA-- --SSGGGCGGSGGCGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Reverse Complement BTVKGGSMGGGGGCGSS BGRRRGRGGRTGRTTYGGGG BTVBGGVDGRGGGYGGBTYGGGG Direction: Forward Position #: 4 Overlap #: 14 Alignment: BTVKGGSMGGGGGCGSS------ ---BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfp423 Combined Motif Original Motif Reverse Complement BTVBGGVDGRGGGYGGBTYGGGG GYRYCCMTKGGYRSC BTRBGBCCVDGGGYGSBTYGGGG Direction: Forward Position #: 3 Overlap #: 15 Alignment: BTVBGGVDGRGGGYGGBTYGGGG --GYRYCCMTKGGYRSC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Original Motif BTRBGBCCVDGGGYGSBTYGGGG RGGBCAAAGKYCA BTRGGBCMRAGGBYRSBTYGGGG Direction: Forward Position #: 3 Overlap #: 13 Alignment: BTRBGBCCVDGGGYGSBTYGGGG --RGGBCAAAGKYCA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Original Motif Original Motif BTRGGBCMRAGGBYRSBTYGGGG VVGCSGGGCGBB BTRGVBSMVRGGCSVSBTYGGGG Direction: Forward Position #: 5 Overlap #: 12 Alignment: BTRGGBCMRAGGBYRSBTYGGGG ----VVGCSGGGCGBB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Reverse Complement CCCCMABSVSGCCMVRSBVCMAB MGGTCAGGGTGACCTRDBHV MSSYMAGBVYGMCCHRSBHBMAB Direction: Forward Position #: 1 Overlap #: 20 Alignment: CCCCMABSVSGCCMVRSBVCMAB MGGTCAGGGTGACCTRDBHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Reverse Complement Reverse Complement BTRBDBSMHGGRCMVBCTRKSSR TGTGTGTGTGTG TGTGTGDSTGTGBTRBDBSMHGGRCMVBC Direction: Backward Position #: 7 Overlap #: 6 Alignment: BTRBDBSMHGGRCMVBCTRKSSR------ -----------------TGTGTGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 52 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 ccCCmCACCcc Original Motif Reverse Complement DGGGYGKGGC DDGGTGRGGBD DDGGGTGGGGB Direction: Backward Position #: 2 Overlap #: 10 Alignment: DGGGYGKGGC- DDGGTGRGGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Reverse Complement DDGGGTGGGGB SSGGGCGGSGGCGSS DBGGGKSGGGGGCGSS Direction: Forward Position #: 2 Overlap #: 10 Alignment: DDGGGTGGGGB----- -SSGGGCGGSGGCGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Reverse Complement DBGGGKSGGGGGCGSS BGRRRGRGGRTGRTTYGGGG BGGGGGGGGGKGVKBBGGGG Direction: Forward Position #: 1 Overlap #: 16 Alignment: DBGGGKSGGGGGCGSS---- BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Original Motif BGGGGGGGGGKGVKBBGGGG BBVGCCBVGGCCTV BBVGSBGVGGSYKVKBBGGGG Direction: Forward Position #: 2 Overlap #: 13 Alignment: -BGGGGGGGGGKGVKBBGGGG BBVGCCBVGGCCTV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCrCYyYCGss Original Motif Reverse Complement BBVGSBGVGGSYKVKBBGGGG BBCGGKGGMGBB BBCGGBGGSGSBKVKBBGGGG Direction: Forward Position #: 1 Overlap #: 12 Alignment: BBVGSBGVGGSYKVKBBGGGG BBCGGKGGMGBB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Original Motif Reverse Complement BBCGGBGGSGSBKVKBBGGGG GGGGGYGGGG GGSGGBGGGGSBKVKBBGGGG Direction: Forward Position #: 1 Overlap #: 10 Alignment: BBCGGBGGSGSBKVKBBGGGG GGGGGYGGGG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Original Motif Reverse Complement GGSGGBGGGGSBKVKBBGGGG TGTGTGTGTGTKTG GGSGGBGGGGSBKVKBTGKGKGTGTGTKTG Direction: Forward Position #: 17 Overlap #: 5 Alignment: GGSGGBGGGGSBKVKBBGGGG--------- ----------------TGTGTGTGTGTKTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Original Motif GGSGGBGGGGSBKVKBTGKGKGTGTGTKTG TGYCAGGGGGCR KGBVDGGGGGCVKVKBTGKGKGTGTGTKTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: GGSGGBGGGGSBKVKBTGKGKGTGTGTKTG TGYCAGGGGGCR------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Original Motif Original Motif KGBVDGGGGGCVKVKBTGKGKGTGTGTKTG VGCACGTGGH KVBCASGKGGCVKVKBTGKGKGTGTGTKTG Direction: Forward Position #: 2 Overlap #: 10 Alignment: KGBVDGGGGGCVKVKBTGKGKGTGTGTKTG -VGCACGTGGH------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCTswGCCms Original Motif Original Motif KVBCASGKGGCVKVKBTGKGKGTGTGTKTG VBGCTSAGCCHB BVGCWSRGSSHVKVKBTGKGKGTGTGTKTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: KVBCASGKGGCVKVKBTGKGKGTGTGTKTG VBGCTSAGCCHB------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 53 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF ssCrCYyYCGss Original Motif Original Motif BAACGTCCGC BBCRCCYCCGBB BBMACSTCCGCB Direction: Backward Position #: 2 Overlap #: 10 Alignment: -BAACGTCCGC- BBCRCCYCCGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MYCMAX Original Motif Reverse Complement BBMACSTCCGCB ACCACGTGSTM VCCACGTSCKHB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBMACSTCCGCB ACCACGTGSTM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement VCCACGTSCKHB BAGGYCABHBTGACCKHV VCCASGTCMBHBTGACCKHV Direction: Forward Position #: 3 Overlap #: 10 Alignment: VCCACGTSCKHB-------- --BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif VCCASGTCMBHBTGACCKHV VDBHMAGGTCACCCTGACCY VCCAVGBCMDBGTSACCBTGACCY Direction: Forward Position #: 5 Overlap #: 16 Alignment: VCCASGTCMBHBTGACCKHV---- ----VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rmACAGCAGsr Reverse Complement Reverse Complement MGGTCAVGGTSACBDRGVCVTGGB DVCTGCTGTVB GTVBBDCTGCTMGGTCAVGGTSACBDRG Direction: Backward Position #: 5 Overlap #: 7 Alignment: MGGTCAVGGTSACBDRGVCVTGGB---- -----------------DVCTGCTGTVB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 54 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Mycn Original Motif Original Motif VGCACGTGGH HSCACGTGGC VSCACGTGGC Direction: Backward Position #: 1 Overlap #: 10 Alignment: VGCACGTGGH HSCACGTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MYCMAX Reverse Complement Reverse Complement GCCACGTGSV ACCACGTGSTM DCCACGTGSDM Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSV- ACCACGTGSTM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Original Motif Original Motif DCCACGTGSDM HVCCAGTGCABD VCCMMGTGCAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: DCCACGTGSDM- HVCCAGTGCABD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGssCGss Original Motif Reverse Complement VCCMMGTGCAHD VSCGSSCGSB VBCGVGYGCVHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: VCCMMGTGCAHD VSCGSSCGSB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Reverse Complement VBCGVGYGCVHD MGCCCCCTGMCA MDCCCCSTGMCAD Direction: Forward Position #: 2 Overlap #: 11 Alignment: -VBCGVGYGCVHD MGCCCCCTGMCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGrGCGss Reverse Complement Reverse Complement DTGRCASGGGGHR VBCGCMCGSV BBCGCMCGSGGHR Direction: Forward Position #: 1 Overlap #: 10 Alignment: DTGRCASGGGGHR VBCGCMCGSV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCksCGss Original Motif Original Motif BBCGCMCGSGGHR VVCGCKSCGBB BBCGCHSSGSBHR Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBCGCMCGSGGHR VVCGCKSCGBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Reverse Complement BBCGCHSSGSBHR GCCYCMCCCD BCCBCHCCSDBHR Direction: Forward Position #: 1 Overlap #: 10 Alignment: BBCGCHSSGSBHR GCCYCMCCCD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCKCwsCGss Original Motif Original Motif BCCBCHCCSDBHR BVCGCWSCGBV BBCGCWCCGVBHR Direction: Forward Position #: 1 Overlap #: 11 Alignment: BCCBCHCCSDBHR BVCGCWSCGBV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Reverse Complement BBCGCWCCGVBHR VAGGCCBBGGCVBB VASGCCSCGSBVVB Direction: Forward Position #: 1 Overlap #: 13 Alignment: BBCGCWCCGVBHR- VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 55 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MYCMAX RREB1 Reverse Complement Original Motif ACCACGTGSTM CCCCMAAMCAMCCMCMMMCV CMMMCVCMMACSWSCHMCCC Direction: Backward Position #: 7 Overlap #: 11 Alignment: ---ACCACGTGSTM------ CCCCMAAMCAMCCMCMMMCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Original Motif Original Motif CMMMCVCMMACSWSCHMCCC HWDAGHACRHHVTGTHCCHVMV HWDMVMMCRHMMWSBWCCHVMCC Direction: Forward Position #: 4 Overlap #: 19 Alignment: ---CMMMCVCMMACSWSCHMCCC HWDAGHACRHHVTGTHCCHVMV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ccCCAGTGCAbr Combined Motif Reverse Complement Reverse Complement GGRVDGGWVSWRRDKGYYVRDWH DBTGCACTGGVD GGRVBKGCACTGGDBGYYVRDWH Direction: Forward Position #: 4 Overlap #: 12 Alignment: GGRVDGGWVSWRRDKGYYVRDWH ---DBTGCACTGGVD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfp423 Combined Motif Original Motif Reverse Complement GGRVBKGCACTGGDBGYYVRDWH GYRYCCMTKGGYRSC GGRBRYSCMHTGGBDGYYVRDWH Direction: Forward Position #: 3 Overlap #: 15 Alignment: GGRVBKGCACTGGDBGYYVRDWH --GYRYCCMTKGGYRSC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Original Motif GGRBRYSCMHTGGBDGYYVRDWH GGGGCCCAAGGGGG GGGGSYCMMBGGGGDGYYVRDWH Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGRBRYSCMHTGGBDGYYVRDWH GGGGCCCAAGGGGG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- INSM1 Combined Motif Original Motif Original Motif GGGGSYCMMBGGGGDGYYVRDWH TGYCAGGGGGCR GGGKGYCWRGGGGBRGYYVRDWH Direction: Forward Position #: 4 Overlap #: 12 Alignment: GGGGSYCMMBGGGGDGYYVRDWH ---TGYCAGGGGGCR-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif HWDMVMKCMBCCCCMWGKCRCCC TTCAGCACCATGGACAGCKCC KCCDHCAGCACCMYSGASDGVHWDMV Direction: Backward Position #: 4 Overlap #: 18 Alignment: HWDMVMKCMBCCCCMWGKCRCCC--- -----TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 56 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Myc Original Motif Original Motif HSCACGTGGC VGCACGTGGH VSCACGTGGC Direction: Backward Position #: 1 Overlap #: 10 Alignment: HSCACGTGGC VGCACGTGGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MYCMAX Reverse Complement Reverse Complement GCCACGTGSV ACCACGTGSTM DCCACGTGSDM Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSV- ACCACGTGSTM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Original Motif Original Motif DCCACGTGSDM HVCCAGTGCABD VCCMMGTGCAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: DCCACGTGSDM- HVCCAGTGCABD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGssCGss Original Motif Reverse Complement VCCMMGTGCAHD VSCGSSCGSB VBCGVGYGCVHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: VCCMMGTGCAHD VSCGSSCGSB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGrGCGss Original Motif Original Motif VBCGVGYGCVHD VSCGRGCGBV VSCGVGCGSVHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: VBCGVGYGCVHD VSCGRGCGBV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Original Motif VSCGVGCGSVHD TGYCAGGGGGCR TGBVMGGGSGCRHD Direction: Forward Position #: 3 Overlap #: 10 Alignment: --VSCGVGCGSVHD TGYCAGGGGGCR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGMsGRGCGss Original Motif Original Motif TGBVMGGGSGCRHD VVGCSGGGCGBB BGGCVGGGCGBVHD Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGBVMGGGSGCRHD VVGCSGGGCGBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCksCGss Reverse Complement Original Motif DDVBCGCCCVGCCV VVCGCKSCGBB BVCGCKCCSVGCCV Direction: Forward Position #: 1 Overlap #: 11 Alignment: DDVBCGCCCVGCCV VVCGCKSCGBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Reverse Complement BVCGCKCCSVGCCV GCCYCMCCCD BCCBCVCCCDGCCV Direction: Forward Position #: 1 Overlap #: 10 Alignment: BVCGCKCCSVGCCV GCCYCMCCCD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif BGGCHGGGVGBGGB VDBHMAGGTCACCCTGACCY BGBVVSSRGGBSRBCCTGACCY Direction: Forward Position #: 3 Overlap #: 12 Alignment: BGGCHGGGVGBGGB-------- --VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 57 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MZF1_5-13 rrAGGGGGArr Original Motif Original Motif BKAGGGGDAD VVAGGGGGAVV VBDAGGGGGAV Direction: Backward Position #: 2 Overlap #: 10 Alignment: BKAGGGGDAD- VVAGGGGGAVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Reverse Complement Reverse Complement BTCCCCCTHBV MGCCCCCTGMCA HKCCCCCTVVCA Direction: Forward Position #: 1 Overlap #: 11 Alignment: BTCCCCCTHBV- MGCCCCCTGMCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement HKCCCCCTVVCA MSGKKRCGCWDCABTGBBCD MSVKBMCSCTDCMRTGBBCD Direction: Forward Position #: 3 Overlap #: 12 Alignment: --HKCCCCCTVVCA------ MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement MSVKBMCSCTDCMRTGBBCD TGRCCTKTGHCCKAB MSVKTVMCCTKYVVYVBHCD Direction: Forward Position #: 5 Overlap #: 15 Alignment: MSVKBMCSCTDCMRTGBBCD ----TGRCCTKTGHCCKAB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfp423 Combined Motif Reverse Complement Original Motif HGHVVKBVMRAGGRVARVSR GSMMCCYARGGKKKC HGBMVCCBARRGGDBMRVSR Direction: Forward Position #: 2 Overlap #: 15 Alignment: HGHVVKBVMRAGGRVARVSR -GSMMCCYARGGKKKC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Reverse Complement HGBMVCCBARRGGDBMRVSR BGRRRGRGGRTGRTTYGGGG HGVVVGVVRRKGGBYHGVGR Direction: Forward Position #: 1 Overlap #: 20 Alignment: HGBMVCCBARRGGDBMRVSR BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Original Motif HGVVVGVVRRKGGBYHGVGR RGGBCAAAGKYCA VGDVVRARGGBSRBYHGVGR Direction: Forward Position #: 1 Overlap #: 13 Alignment: HGVVVGVVRRKGGBYHGVGR RGGBCAAAGKYCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Original Motif Original Motif VGDVVRARGGBSRBYHGVGR RGKTCABVVRGAGGTCA RGKTCAVVGRBVGKTCRVGR Direction: Forward Position #: 1 Overlap #: 17 Alignment: VGDVVRARGGBSRBYHGVGR RGKTCABVVRGAGGTCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Original Motif Reverse Complement RGKTCAVVGRBVGKTCRVGR DDGGTGRGGBD DGGGYRRGGDBVGKTCRVGR Direction: Forward Position #: 1 Overlap #: 11 Alignment: RGKTCAVVGRBVGKTCRVGR DDGGTGRGGBD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Reverse Complement DGGGYRRGGDBVGKTCRVGR SSGGGCGGSGGCGSS DGGGBGGGGVGRGGKCGVGR Direction: Forward Position #: 5 Overlap #: 15 Alignment: DGGGYRRGGDBVGKTCRVGR ----SSGGGCGGSGGCGSS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 58 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NFKB1 Tcfcp2l1 Original Motif Reverse Complement GGGGRTTCCCC CKGGDTBDMMCTGG TGGSGGGDTBBCCC Direction: Backward Position #: 4 Overlap #: 11 Alignment: GGGGRTTCCCC--- CKGGDTBDMMCTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCTswGCCms Reverse Complement Original Motif GGGBVADCCCSCCA VBGCTSAGCCHB VGGSTVAGCCHSCCA Direction: Forward Position #: 2 Overlap #: 11 Alignment: -GGGBVADCCCSCCA VBGCTSAGCCHB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif TGGSDGGCTVASCCV TTCAGCACCATGGACAGCKCC TTCAGCACCATGGVSRGCDSMSCCV Direction: Forward Position #: 11 Overlap #: 11 Alignment: ----------TGGSDGGCTVASCCV TTCAGCACCATGGACAGCKCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Reverse Complement Original Motif VGGSRSDGCKSBCCATGGTGCTGAA SSCGCCSCCGCCCSS VSGCRSVSCBGCCCVBGGTGCTGAA Direction: Forward Position #: 2 Overlap #: 15 Alignment: VGGSRSDGCKSBCCATGGTGCTGAA -SSCGCCSCCGCCCSS--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif TTCAGCACCVBGGGCBGSVSMGCSV DGVBCABTGDWGCGKRRCSR TTCAGVRCCHHGKGVDGCGBVGCSV Direction: Forward Position #: 6 Overlap #: 20 Alignment: TTCAGCACCVBGGGCBGSVSMGCSV -----DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Reverse Complement Original Motif VSGCBBCGCHBCYCHDGGKVCTGAA CCCCMAAMCAMCCMCMMMCV CCMCVMHHCRCCCCCHHVSVKVCTGAA Direction: Forward Position #: 3 Overlap #: 18 Alignment: --VSGCBBCGCHBCYCHDGGKVCTGAA CCCCMAAMCAMCCMCMMMCV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCwGGCCwGCss Reverse Complement Original Motif TTCAGVRVSVDDGGGGGKGDHYBGRGG BBCWGGCCAGCBB BBCWGGMCVGVVBGGGGKGDHYBGRGG Direction: Forward Position #: 1 Overlap #: 13 Alignment: TTCAGVRVSVDDGGGGGKGDHYBGRGG BBCWGGCCAGCBB-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Reverse Complement Reverse Complement CCMCVMHHCRCCCCBVVCBGRCCWGVV GCCYCMCCCD VCCCCMCCCRCCCCBVVCBGRCCWGVV Direction: Forward Position #: 1 Overlap #: 10 Alignment: CCMCVMHHCRCCCCBVVCBGRCCWGVV GCCYCMCCCD----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- mkARGCCACG Combined Motif Original Motif Original Motif VCCCCMCCCRCCCCBVVCBGRCCWGVV CKAGGCCACG VCCBMRSCCACSCCBVVCBGRCCWGVV Direction: Forward Position #: 3 Overlap #: 10 Alignment: VCCCCMCCCRCCCCBVVCBGRCCWGVV --CKAGGCCACG--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Reverse Complement VCCBMRSCCACSCCBVVCBGRCCWGVV CCCCCTTGGGCCCC CCCCCYWRGSCMCCCCBVVCBGRCCWGVV Direction: Forward Position #: 3 Overlap #: 12 Alignment: --VCCBMRSCCACSCCBVVCBGRCCWGVV CCCCCTTGGGCCCC--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 59 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA REST Reverse Complement Reverse Complement GTTGACCTTTGACCTTT GGYGCTGTCCATGGTGCTGAA GGYGYTGWCCTTKGWSCTKWA Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---GTTGACCTTTGACCTTT- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Reverse Complement GGYGYTGWCCTTKGWSCTKWA TGRCCTKTGHCCKAB TGRSCKYTGHCCTWBGWSCTKWA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --GGYGYTGWCCTTKGWSCTKWA TGRCCTKTGHCCKAB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRAVDR Original Motif Reverse Complement TGRSCKYTGHCCTWBGWSCTKWA TGAACKCBWTGACCC TGWRCBCBHTGACCHWBGWSCTKWA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --TGRSCKYTGHCCTWBGWSCTKWA TGAACKCBWTGACCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif TWYAGSWCBWDGGTCAHBGBGKWCA VDBHMAGGTCACCCTGACCY TWYAGVDCBHDGGTCAHBVTGDHCH Direction: Forward Position #: 6 Overlap #: 20 Alignment: TWYAGSWCBWDGGTCAHBGBGKWCA -----VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Reverse Complement Original Motif HGDDCAVBDTGACCDHBGDVCTKWA TKKTTTGTTTTTTT HGDDCAVBDTGACCDHTGDHYTKWDTTTTT Direction: Forward Position #: 17 Overlap #: 9 Alignment: HGDDCAVBDTGACCDHBGDVCTKWA----- ----------------TKKTTTGTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 60 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR4A2 NR1H2RXRA Original Motif Original Motif AAGGTCAC AAAGGTCAAAGGTCAAC AAAGGTCAMAGGTCAAC Direction: Forward Position #: 2 Overlap #: 8 Alignment: -AAGGTCAC-------- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif GTTGACCTYTGACCTTT VDBHMAGGTCACCCTGACCY VDBHMAGGTCACSYTGACCTYTGACCTTT Direction: Forward Position #: 13 Overlap #: 8 Alignment: ------------GTTGACCTYTGACCTTT VDBHMAGGTCACCCTGACCY--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Original Motif AAAGGTCAMAGGTCAMSGTGACCTRDBHV VHRGGTCABDBTGMCCTB MAAGGTCAVVGKKCMMBBTGACCTRDBHV Direction: Forward Position #: 1 Overlap #: 18 Alignment: AAAGGTCAMAGGTCAMSGTGACCTRDBHV VHRGGTCABDBTGMCCTB----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif mkARGCCACG Original Motif Original Motif MAAGGTCAVVGKKCMMBBTGACCTRDBHV CKAGGCCACG MDAGGYCACRGKKCMMBBTGACCTRDBHV Direction: Forward Position #: 1 Overlap #: 10 Alignment: MAAGGTCAVVGKKCMMBBTGACCTRDBHV CKAGGCCACG------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Original Motif Reverse Complement MDAGGYCACRGKKCMMBBTGACCTRDBHV VRVDGGHACAVDDKGTHCTDWH VRAGGBCACVGKKBRYHCTDACCTRDBHV Direction: Forward Position #: 1 Overlap #: 22 Alignment: MDAGGYCACRGKKCMMBBTGACCTRDBHV VRVDGGHACAVDDKGTHCTDWH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement VRAGGBCACVGKKBRYHCTDACCTRDBHV TGRCCTKTGHCCKAB VRAGGKBACMKKTBVCYBDBACCTRDBHV Direction: Forward Position #: 6 Overlap #: 15 Alignment: VRAGGBCACVGKKBRYHCTDACCTRDBHV -----TGRCCTKTGHCCKAB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Reverse Complement Reverse Complement VDBHMAGGTBDBKGVBARRRGTBRCCTMV DBTGCACTGGVD DBTGCACWGGDBDBKGVBARRRGTBRCCTMV Direction: Forward Position #: 3 Overlap #: 10 Alignment: --VDBHMAGGTBDBKGVBARRRGTBRCCTMV DBTGCACTGGVD------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Reverse Complement DBTGCACWGGDBDBKGVBARRRGTBRCCTMV AKGYYCAAAGRTCA ADGYBCAMAGGTCABKGVBARRRGTBRCCTMV Direction: Forward Position #: 2 Overlap #: 13 Alignment: -DBTGCACWGGDBDBKGVBARRRGTBRCCTMV AKGYYCAAAGRTCA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif ADGYBCAMAGGTCABKGVBARRRGTBRCCTMV TTCAGCACCATGGACAGCKCC TTMAGBACMMHGGWCAGBKVCARRRGTBRCCTMV Direction: Forward Position #: 3 Overlap #: 19 Alignment: --ADGYBCAMAGGTCABKGVBARRRGTBRCCTMV TTCAGCACCATGGACAGCKCC------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Original Motif VRAGGKBACMKKTGVYBCTGWCCHYRGTBCTRAA BBVGCCBVGGCCTV VVVGSYBASGCCTGVYBCTGWCCHYRGTBCTRAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: VRAGGKBACMKKTGVYBCTGWCCHYRGTBCTRAA BBVGCCBVGGCCTV-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 61 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 ESR1 Reverse Complement Reverse Complement MSGKKRCGCWDCABTGBBCD MGGTCAGGGTGACCTRDBHV MGGTBAVGCTKVMCTGBBMD Direction: Backward Position #: 1 Overlap #: 20 Alignment: MSGKKRCGCWDCABTGBBCD MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Reverse Complement MGGTBAVGCTKVMCTGBBMD VRVDGGHACAVDDKGTHCTDWH MGGTBRVDSKDACVBDBKGTHCTDWH Direction: Forward Position #: 5 Overlap #: 16 Alignment: MGGTBAVGCTKVMCTGBBMD------ ----VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement HWDAGHACRBHVBGTDYSHVKBACCY BAGGYCABHBTGACCKHV HWDAGARSHCMHHGTGMCCBTVACCY Direction: Forward Position #: 5 Overlap #: 18 Alignment: HWDAGHACRBHVBGTDYSHVKBACCY ----BAGGYCABHBTGACCKHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif MGGTVABGGYCACDDYGHSMTCTDWH TTCAGCACCATGGACAGCKCC TTCAVSRCCAYGGACASBDBBHSMTCTDWH Direction: Forward Position #: 5 Overlap #: 17 Alignment: ----MGGTVABGGYCACDDYGHSMTCTDWH TTCAGCACCATGGACAGCKCC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Original Motif Original Motif TTCAVSRCCAYGGACASBDBBHSMTCTDWH RGKTCABVVRGAGGTCA RGKYMABRBVVHGGWCASBDBBHSMTCTDWH Direction: Forward Position #: 2 Overlap #: 16 Alignment: -TTCAVSRCCAYGGACASBDBBHSMTCTDWH RGKTCABVVRGAGGTCA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Combined Motif Original Motif Original Motif RGKYMABRBVVHGGWCASBDBBHSMTCTDWH DHAYAYAYRTGTGTRTDH RGKYMRBRYAHABRTSWGTRYVHSMTCTDWH Direction: Forward Position #: 6 Overlap #: 18 Alignment: RGKYMABRBVVHGGWCASBDBBHSMTCTDWH -----DHAYAYAYRTGTGTRTDH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Reverse Complement Original Motif HWDAGARSHVMMACWSAMBTDTKKBKYMRCK CCCCMAAMCAMCCMCMMMCV CCHCAVAVCAMCCMCHVMCVTDTKKBKYMRCK Direction: Forward Position #: 2 Overlap #: 19 Alignment: -HWDAGARSHVMMACWSAMBTDTKKBKYMRCK CCCCMAAMCAMCCMCMMMCV------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Reverse Complement RGKYMRBRYAHAVGYVHGYGGRTGBTBTGDGG TGRCCTKTGHCCKAB RGKYMRBDBACMKKTGHSCKRVTGBTBTGDGG Direction: Forward Position #: 8 Overlap #: 15 Alignment: RGKYMRBRYAHAVGYVHGYGGRTGBTBTGDGG -------TGRCCTKTGHCCKAB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Reverse Complement Original Motif CCHCAVAVCAVKYGSDCAYRRGTBDBKYMRCK SSCGCCSCCGCCCSS CCCVMCVMCRCCCBSDCAYRRGTBDBKYMRCK Direction: Forward Position #: 1 Overlap #: 15 Alignment: CCHCAVAVCAVKYGSDCAYRRGTBDBKYMRCK SSCGCCSCCGCCCSS----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAAAAAAAAAA Combined Motif Reverse Complement Reverse Complement RGKYMRBDBACMKKTGHSBGGGKGRVGRVGGG DVTGCATGCATGBH RGKHHGCATRCATGTVHSBGGGKGRVGRVGGG Direction: Forward Position #: 3 Overlap #: 14 Alignment: RGKYMRBDBACMKKTGHSBGGGKGRVGRVGGG --DVTGCATGCATGBH---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 62 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RORA_1 ESR1 Reverse Complement Reverse Complement TGACCTDVWT MGGTCAGGGTGACCTRDBHV VTGACCTDDDHMGGTCAGGG Direction: Backward Position #: 2 Overlap #: 10 Alignment: ---------TGACCTDVWT- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRAVDR Combined Motif Original Motif Reverse Complement VTGACCTDDDHMGGTCAGGG TGAACKCBWTGACCC VTGAMCKVDHTVRSYCAGGG Direction: Forward Position #: 2 Overlap #: 15 Alignment: VTGACCTDDDHMGGTCAGGG -TGAACKCBWTGACCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Reverse Complement Original Motif CCCTGKSKVAHHVRGYTCAV AAAGGTCAAAGGTCAAC CCCTGKSKVAHMRAGKTCAAAGGTCAAC Direction: Forward Position #: 12 Overlap #: 9 Alignment: CCCTGKSKVAHHVRGYTCAV-------- -----------AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Reverse Complement Reverse Complement GTTGACCTTTGAYCTKYHTVRSYCAGGG TGACCTCKVVBTGAYCK TGVYYKAYCTBTGAYCKKYHTVRSYCAGGG Direction: Forward Position #: 3 Overlap #: 15 Alignment: --GTTGACCTTTGAYCTKYHTVRSYCAGGG TGACCTCKVVBTGAYCK------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Original Motif TGVYYKAYCTBTGAYCKKYHTVRSYCAGGG TGAMCTTTGMMCYT TGVYTGACCTTTGAHCBKYHTVRSYCAGGG Direction: Forward Position #: 5 Overlap #: 14 Alignment: TGVYYKAYCTBTGAYCKKYHTVRSYCAGGG ----TGAMCTTTGMMCYT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement TGVYTGACCTTTGAHCBKYHTVRSYCAGGG TGRCCTKTGHCCKAB TGVYTKRVCYTTKRHCYKHHTVRSYCAGGG Direction: Forward Position #: 6 Overlap #: 15 Alignment: TGVYTGACCTTTGAHCBKYHTVRSYCAGGG -----TGRCCTKTGHCCKAB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Reverse Complement TGVYTKRVCYTTKRHCYKHHTVRSYCAGGG GGYGCTGTCCATGGTGCTGAA TGVYTKRVCYTTKRHCBBHVYTGBCCADGGTGCTGAA Direction: Forward Position #: 17 Overlap #: 14 Alignment: TGVYTKRVCYTTKRHCYKHHTVRSYCAGGG------- ----------------GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Reverse Complement TGVYTKRVCYTTKRHCBBHVYTGBCCADGGTGCTGAA TGMYCTTTGBCCK TGVYYTDHSBYYKRHCBBHVYTGBCCADGGTGCTGAA Direction: Forward Position #: 1 Overlap #: 13 Alignment: TGVYTKRVCYTTKRHCBBHVYTGBCCADGGTGCTGAA TGMYCTTTGBCCK------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Original Motif TTCAGCACCDTGGVCAKVDBBGDKRMMBSHDAKMBCA HWDAGHACRHHVTGTHCCHVMV HTHAGHACVHYGKGHHSCDBHGDKRMMBSHDAKMBCA Direction: Forward Position #: 1 Overlap #: 22 Alignment: TTCAGCACCDTGGVCAKVDBBGDKRMMBSHDAKMBCA HWDAGHACRHHVTGTHCCHVMV--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Original Motif Original Motif HTHAGHACVHYGKGHHSCDBHGDKRMMBSHDAKMBCA HVCCAGTGCABD HHYCAGTRCABHGKGHHSCDBHGDKRMMBSHDAKMBCA Direction: Forward Position #: 2 Overlap #: 11 Alignment: -HTHAGHACVHYGKGHHSCDBHGDKRMMBSHDAKMBCA HVCCAGTGCABD-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 63 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 ESR1 Original Motif Reverse Complement RGKTCABVVRGAGGTCA MGGTCAGGGTGACCTRDBHV DSRKSRTGRMCDGGBCAMGG Direction: Backward Position #: 1 Overlap #: 17 Alignment: ---RGKTCABVVRGAGGTCA MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement CCYTGVCCDGRKCAKSRKSD BAGGYCABHBTGACCKHV CCBHGRYCABVBYRDCVKBD Direction: Forward Position #: 3 Overlap #: 18 Alignment: CCYTGVCCDGRKCAKSRKSD --BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Reverse Complement HBRVGDMMBVBTGKMCHVGG MSGKKRCGCWDCABTGBBCD MSGBBRVGCHHCVBTGBHCDVGG Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---HBRVGDMMBVBTGKMCHVGG MSGKKRCGCWDCABTGBBCD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Original Motif CCBDGDVCABBGHHGCVKBVCSR HWDAGHACRHHVTGTHCCHVMV CHHAGHACABBVHGKHCBBVCSR Direction: Forward Position #: 1 Overlap #: 22 Alignment: CCBDGDVCABBGHHGCVKBVCSR HWDAGHACRHHVTGTHCCHVMV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif MSGVBVGDRCHVBBTGTHCTHDG BTRGGDCARAGGKCA MSGVBHRGRBVADRKGTBMTHDG Direction: Forward Position #: 5 Overlap #: 15 Alignment: MSGVBVGDRCHVBBTGTHCTHDG ----BTRGGDCARAGGKCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRAVDR Combined Motif Original Motif Original Motif MSGVBHRGRBVADRKGTBMTHDG GGGTCAWBGRGTTCA HDGDGGTCAHVRRGTTCDMSGVB Direction: Backward Position #: 4 Overlap #: 15 Alignment: MSGVBHRGRBVADRKGTBMTHDG -----GGGTCAWBGRGTTCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif BVCSRDGAACMMBHTGACCHCHH TGAMCTTTGMMCYT TGAMCBDTGMACMHBHTGACCHCHH Direction: Forward Position #: 3 Overlap #: 12 Alignment: --BVCSRDGAACMMBHTGACCHCHH TGAMCTTTGMMCYT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Original Motif HDGDGGTCAHVDRGTYCADVGRTCA GGGGCCCAAGGGGG HDGGGGKCMHDVGGKKSADVGRTCA Direction: Forward Position #: 4 Overlap #: 14 Alignment: HDGDGGTCAHVDRGTYCADVGRTCA ---GGGGCCCAAGGGGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Original Motif HDGGGGKCMHDVGGKKSADVGRTCA RGGBCAAAGKYCA HDGGGGGCCAAAGGBBVADVGRTCA Direction: Forward Position #: 5 Overlap #: 13 Alignment: HDGGGGKCMHDVGGKKSADVGRTCA ----RGGBCAAAGKYCA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Reverse Complement HDGGGGGCCAAAGGBBVADVGRTCA BGRRRGRGGRTGRTTYGGGG HBGGRGGVVRRWGGTYHRRGGRTCA Direction: Forward Position #: 2 Overlap #: 20 Alignment: HDGGGGGCCAAAGGBBVADVGRTCA -BGRRRGRGGRTGRTTYGGGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 64 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Ar Original Motif Original Motif CCAGYYHVADCCRG HWDAGHACRHHVTGTHCCHVMV MVMCAGYBYGWDCCDGHWDAGH Direction: Backward Position #: 3 Overlap #: 14 Alignment: ------CCAGYYHVADCCRG-- HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif MVMCAGYBYGWDCCDGHWDAGH VDBHMAGGTCACCCTGACCY MVMCRBBBHRDGYCASHHTRRCCY Direction: Forward Position #: 5 Overlap #: 18 Alignment: MVMCAGYBYGWDCCDGHWDAGH-- ----VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Reverse Complement MGGMMADDSTGKCHKDBBBKGRVR VAGGCCBBGGCVBB VAGGCCHBGSHGBVHKDBBBKGRVR Direction: Forward Position #: 2 Overlap #: 13 Alignment: -MGGMMADDSTGKCHKDBBBKGRVR VAGGCCBBGGCVBB----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Reverse Complement Original Motif MVMCRBBBHRDVBCHSCBHGGCCTV CCCCMAAMCAMCCMCMMMCV CCCCMMMCCAMCCVVVHCVVCBHGGCCTV Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----MVMCRBBBHRDVBCHSCBHGGCCTV CCCCMAAMCAMCCMCMMMCV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Original Motif CCCCMMMCCAMCCVVVHCVVCBHGGCCTV SSCGCCSCCGCCCSS CCCSCCMCCRCCCVVVHCVVCBHGGCCTV Direction: Forward Position #: 1 Overlap #: 15 Alignment: CCCCMMMCCAMCCVVVHCVVCBHGGCCTV SSCGCCSCCGCCCSS-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Original Motif VAGGCCHBGVVGDVVVGGGKGGRGGSGGG GGGGCCCAAGGGGG GGRGSCCWVGGGGGVVVGGGKGGRGGSGGG Direction: Forward Position #: 2 Overlap #: 13 Alignment: -VAGGCCHBGVVGDVVVGGGKGGRGGSGGG GGGGCCCAAGGGGG---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif GGRGSCCWVGGGGGVVVGGGKGGRGGSGGG VHRGGTCABDBTGMCCTB GDRGGYCAVGGKGVVCBGGGKGGRGGSGGG Direction: Forward Position #: 1 Overlap #: 18 Alignment: GGRGSCCWVGGGGGVVVGGGKGGRGGSGGG VHRGGTCABDBTGMCCTB------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Original Motif GDRGGYCAVGGKGVVCBGGGKGGRGGSGGG BTRGGDCARAGGKCA SDRGGBCAVRGGKVMCBGGGKGGRGGSGGG Direction: Forward Position #: 1 Overlap #: 15 Alignment: GDRGGYCAVGGKGVVCBGGGKGGRGGSGGG BTRGGDCARAGGKCA--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement CCCSCCMCCRCCCVGYVYCCKBTGVCCKDS MSGKKRCGCWDCABTGBBCD MCSBBVCVCDBCMVBBBBCBKBTGVCCKDS Direction: Forward Position #: 1 Overlap #: 20 Alignment: CCCSCCMCCRCCCVGYVYCCKBTGVCCKDS MSGKKRCGCWDCABTGBBCD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Reverse Complement Original Motif SDRGGBCAVRBGBBBVVRGBDGVGBBBSGR RGKTCABVVRGAGGTCA RGKTSRBCARRVGKBCAVRGBDGVGBBBSGR Direction: Forward Position #: 2 Overlap #: 16 Alignment: -SDRGGBCAVRBGBBBVVRGBDGVGBBBSGR RGKTCABVVRGAGGTCA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 65 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGrGCGss ssCGssCGss Reverse Complement Reverse Complement VBCGCMCGSV VSCGSSCGSB VBCGSVCGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: VBCGCMCGSV VSCGSSCGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGGsYCGss Reverse Complement Reverse Complement VSCGVSCGBV VSCGGSCCGSB VSCGGSCSGSB Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCGVSCGBV- VSCGGSCCGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCrCYyYCGss Original Motif Reverse Complement VSCGGSCSGSB BBCGGKGGMGBB VSCGGGSGSGBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: VSCGGSCSGSB- BBCGGKGGMGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGsCwsCss Original Motif Original Motif VSCGGGSGSGBB BBCGSCWSCBB BVCGGCHGCGBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: VSCGGGSGSGBB BBCGSCWSCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Reverse Complement Original Motif BBCGCHGCCGVB VVGCSGGGCGBB BBVGSMSSSGCGBB Direction: Forward Position #: 3 Overlap #: 10 Alignment: BBCGCHGCCGVB-- --VVGCSGGGCGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCksCGss Reverse Complement Original Motif BBCGCSSSRSCVBB VVCGCKSCGBB VVCGCBSCGSSVBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBCGCSSSRSCVBB VVCGCKSCGBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGsCTCss Combined Motif Reverse Complement Reverse Complement BBVSSCGSBGCGVV BBGAGSCGVV BBVBGMGSCGCGVV Direction: Forward Position #: 3 Overlap #: 10 Alignment: BBVSSCGSBGCGVV --BBGAGSCGVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Original Motif Reverse Complement BBVBGMGSCGCGVV SSGGGCGGSGGCGSS BBGGGMGGSGSSGBS Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBVBGMGSCGCGVV- SSGGGCGGSGGCGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCKCwsCGss Original Motif Reverse Complement BBGGGMGGSGSSGBS VBCGSWGCGVB BBCGGAGSGGSSGBS Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBGGGMGGSGSSGBS VBCGSWGCGVB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss Combined Motif Original Motif Original Motif BBCGGAGSGGSSGBS SSSCGSSGCSSS BBSGSCGSSGCSGSS Direction: Forward Position #: 3 Overlap #: 12 Alignment: BBCGGAGSGGSSGBS --SSSCGSSGCSSS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 66 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGssCGss ssCGrGCGss Reverse Complement Reverse Complement VSCGSSCGSB VBCGCMCGSV VBCGSVCGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCGSSCGSB VBCGCMCGSV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGGsYCGss Reverse Complement Reverse Complement VSCGVSCGBV VSCGGSCCGSB VSCGGSCSGSB Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCGVSCGBV- VSCGGSCCGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sssCGssGCsss Reverse Complement Reverse Complement BSCSGSCCGSV SSSGCSSCGSSS SSSGSSSCGSSS Direction: Forward Position #: 1 Overlap #: 11 Alignment: BSCSGSCCGSV- SSSGCSSCGSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGsCwsCss Original Motif Reverse Complement SSSGSSSCGSSS BBGSWGSCGBB BBGSVGSCGSBS Direction: Forward Position #: 1 Overlap #: 11 Alignment: SSSGSSSCGSSS BBGSWGSCGBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCrCYyYCGss Reverse Complement Reverse Complement SBSCGSCBSCBB BBCGGKGGMGBB BBCSGGSGCSBB Direction: Forward Position #: 1 Overlap #: 12 Alignment: SBSCGSCBSCBB BBCGGKGGMGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGsCTCss Reverse Complement Original Motif BBSGCSCCSGBB VVCGSCTCBB BBCGCCTCSSBB Direction: Forward Position #: 1 Overlap #: 10 Alignment: BBSGCSCCSGBB VVCGSCTCBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCksCGss Original Motif Original Motif BBCGCCTCSSBB VVCGCKSCGBB VVCGCBBCGSBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBCGCCTCSSBB VVCGCKSCGBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Original Motif VVCGCBBCGSBB SSCGCCSCCGCCCSS VVCGCBSCSCCVCCCSS Direction: Forward Position #: 3 Overlap #: 10 Alignment: VVCGCBBCGSBB----- --SSCGCCSCCGCCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Original Motif Reverse Complement VVCGCBSCSCCVCCCSS BBCGCCCSGCVV VVCSCCGCSCCGCCCSS Direction: Forward Position #: 4 Overlap #: 12 Alignment: VVCGCBSCSCCVCCCSS ---BBCGCCCSGCVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Combined Motif Original Motif Original Motif VVCSCCGCSCCGCCCSS HSCACGTGGC VVCVSCRCGYGGCCCSS Direction: Forward Position #: 4 Overlap #: 10 Alignment: VVCSCCGCSCCGCCCSS ---HSCACGTGGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 67 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss ssCrCYyYCGss Original Motif Reverse Complement VVGCSGGGCGBB BBCGGKGGMGBB VVSSGGGGCGBB Direction: Backward Position #: 1 Overlap #: 12 Alignment: VVGCSGGGCGBB BBCGGKGGMGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss Combined Motif Original Motif Original Motif VVSSGGGGCGBB SSSCGSSGCSSS VVSSSSGGCGCSSS Direction: Forward Position #: 3 Overlap #: 10 Alignment: VVSSGGGGCGBB-- --SSSCGSSGCSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCTswGCCms Reverse Complement Reverse Complement SSSGCGCCSSSSVV BDGGCTSAGCBV BVGGCDSMGCVSVV Direction: Forward Position #: 1 Overlap #: 12 Alignment: SSSGCGCCSSSSVV BDGGCTSAGCBV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif BVGGCDSMGCVSVV BBVGCCBVGGCCTV BVSGCGSCGCGGCCTV Direction: Forward Position #: 3 Overlap #: 12 Alignment: BVGGCDSMGCVSVV-- --BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Reverse Complement Original Motif VAGGCCGCGSCGCSVB SSCGCCSCCGCCCSS VASGCCSCSGCSCSBB Direction: Forward Position #: 1 Overlap #: 15 Alignment: VAGGCCGCGSCGCSVB SSCGCCSCCGCCCSS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement VASGCCSCSGCSCSBB MSGKKRCGCWDCABTGBBCD MSRBGVCGCBDCVSBBBBCD Direction: Forward Position #: 2 Overlap #: 16 Alignment: -VASGCCSCSGCSCSBB--- MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Original Motif Original Motif MSRBGVCGCBDCVSBBBBCD HVCCAGTGCABD HVCCAGTGCRCDDCVSBBBBCD Direction: Forward Position #: 3 Overlap #: 10 Alignment: --MSRBGVCGCBDCVSBBBBCD HVCCAGTGCABD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement HGVBBVSVGHDGKGCACTGGVD MGGTCAGGGTGACCTRDBHV MGGTCRVBBHGRSCDGKGVVCTGGVD Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----HGVBBVSVGHDGKGCACTGGVD MGGTCAGGGTGACCTRDBHV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Reverse Complement MGGTCRVBBHGRSCDGKGVVCTGGVD BGRRRGRGGRTGRTTYGGGG MGGTCDGGVDGRGSDTGGYHYGGGGD Direction: Forward Position #: 6 Overlap #: 20 Alignment: MGGTCRVBBHGRSCDGKGVVCTGGVD -----BGRRRGRGGRTGRTTYGGGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCwGGCCwGCss Reverse Complement Reverse Complement HCCCCKHMCCAHSCKCDVCCDGACCY BBGCTGGCCWGBB BVSCYGGCCHGHBCKCDVCCDGACCY Direction: Forward Position #: 1 Overlap #: 13 Alignment: HCCCCKHMCCAHSCKCDVCCDGACCY BBGCTGGCCWGBB------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 68 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dwCTTTTCwy wyATTTTAww Reverse Complement Reverse Complement DHGAAAAGHD DDTAAAATHD DHKAAAAKHD Direction: Backward Position #: 1 Overlap #: 10 Alignment: DHGAAAAGHD DDTAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAwAAww Original Motif Original Motif DHKAAAAKHD DDTAAWAAHH DHTAAAADHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHKAAAAKHD DDTAAWAAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif DHTAAAADHD WWAAAAAAWH DWWAAAAAHH Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHTAAAADHD WWAAAAAAWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Reverse Complement Reverse Complement HHTTTTTWWD HHTWTTTADD HHTTTTTADD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHTTTTTWWD HHTWTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Reverse Complement Reverse Complement DDTAAAAAHH DDTAAAAATHD DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAAHH- DDTAAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 69 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- aaACAAAACaa aaCAAAAACaa Reverse Complement Reverse Complement TTGTTTTGTTT HTGTTTTTGHH TTGTTTTKKTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTGTTTTGTTT HTGTTTTTGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Reverse Complement TTGTTTTKKTT TTTTTTTTTTT TTKTTTTTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTGTTTTKKTT TTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Original Motif Original Motif TTKTTTTTTTT TKKTTTGTTTTTTT TTKTTTTKTTTTTTT Direction: Forward Position #: 2 Overlap #: 10 Alignment: TTKTTTTTTTT---- -TKKTTTGTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wtATTTTTAww Combined Motif Original Motif Original Motif TTKTTTTKTTTTTTT DHATTTTTADD TTDTWTTTTTWTTTT Direction: Forward Position #: 3 Overlap #: 11 Alignment: TTKTTTTKTTTTTTT --DHATTTTTADD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- rmACAGCAGsr Combined Motif Reverse Complement Original Motif AAAAWAAAAAWADAA VVACAGCAGVD AAAAWAAAAAWVVAMAGCAGVD Direction: Forward Position #: 12 Overlap #: 4 Alignment: AAAAWAAAAAWADAA------- -----------VVACAGCAGVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Reverse Complement AAAAWAAAAAWVVAMAGCAGVD BGRRRGRGGRTGRTTYGGGG AAAAWAAAAAWVVAMAGCAGVDRGRGGRTGRTTYGGGG Direction: Forward Position #: 19 Overlap #: 4 Alignment: AAAAWAAAAAWVVAMAGCAGVD---------------- ------------------BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tyTCTkTkTCyy Combined Motif Original Motif Reverse Complement AAAAWAAAAAWVVAMAGCAGVDRGRGGRTGRTTYGGGG VHGARAYAGAVV AAAAWAAAAAKARACAGMHGVDRGRGGRTGRTTYGGGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: AAAAWAAAAAWVVAMAGCAGVDRGRGGRTGRTTYGGGG --------VHGARAYAGAVV------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Original Motif Original Motif AAAAWAAAAAKARACAGMHGVDRGRGGRTGRTTYGGGG HACAYAYACATRHD HAHAYAHAMATAVACAGMHGVDRGRGGRTGRTTYGGGG Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAAAWAAAAAKARACAGMHGVDRGRGGRTGRTTYGGGG HACAYAYACATRHD------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Original Motif Original Motif HAHAYAHAMATAVACAGMHGVDRGRGGRTGRTTYGGGG DHAYAYAYRTGTGTRTDH DHAYAYAHAHRTRTRYAGMHGVDRGRGGRTGRTTYGGGG Direction: Forward Position #: 2 Overlap #: 17 Alignment: -HAHAYAHAMATAVACAGMHGVDRGRGGRTGRTTYGGGG DHAYAYAYRTGTGTRTDH--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACACACACACA Combined Motif Reverse Complement Original Motif CCCCMAAMCAMCCMCMHVCHRCTMKAMAKHTDTKTKTHD CACACACACACA CCCCMAAMCACMCACACACHRCTMKAMAKHTDTKTKTHD Direction: Forward Position #: 9 Overlap #: 12 Alignment: CCCCMAAMCAMCCMCMHVCHRCTMKAMAKHTDTKTKTHD --------CACACACACACA------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 70 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- mkARGCCACG ESR2 Reverse Complement Reverse Complement CGTGGCCTYG BAGGYCABHBTGACCKHV BAGGYCABCGTGRCCTYG Direction: Forward Position #: 9 Overlap #: 10 Alignment: --------CGTGGCCTYG BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif CMAGGMCACGBTGMCCTB VDBHMAGGTCACCCTGACCY VDBCMAGGHCACBBTGACCTB Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---CMAGGMCACGBTGMCCTB VDBHMAGGTCACCCTGACCY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Original Motif Reverse Complement VDBCMAGGHCACBBTGACCTB GTTGACCTTTGACCTTT VDBCMAGGHCACSBTGACCTTTGACCTTT Direction: Forward Position #: 13 Overlap #: 9 Alignment: VDBCMAGGHCACBBTGACCTB-------- ------------GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif VDBCMAGGHCACSBTGACCTTTGACCTTT BTRGGDCARAGGKCA VDBVHRGGBCAVRGKGMMCTTTGACCTTT Direction: Forward Position #: 4 Overlap #: 15 Alignment: VDBCMAGGHCACSBTGACCTTTGACCTTT ---BTRGGDCARAGGKCA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Original Motif AAAGGTCAAAGRYCRCKBTGVCCKHVBHV HWDAGHACRHHVTGTHCCHVMV AAAGGTCAAAGVHCRYBBTGTMCBHVVVV Direction: Forward Position #: 7 Overlap #: 22 Alignment: AAAGGTCAAAGRYCRCKBTGVCCKHVBHV ------HWDAGHACRHHVTGTHCCHVMV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Original Motif AAAGGTCAAAGVHCRYBBTGTMCBHVVVV GGGGCCCAAGGGGG ARRGGYCMAAGGGSRYBBTGTMCBHVVVV Direction: Forward Position #: 2 Overlap #: 14 Alignment: AAAGGTCAAAGVHCRYBBTGTMCBHVVVV -GGGGCCCAAGGGGG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Reverse Complement ARRGGYCMAAGGGSRYBBTGTMCBHVVVV BGRRRGRGGRTGRTTYGGGG ARRGGYSVDRGRGGRTGVTKTSSGVVVVV Direction: Forward Position #: 6 Overlap #: 20 Alignment: ARRGGYCMAAGGGSRYBBTGTMCBHVVVV -----BGRRRGRGGRTGRTTYGGGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sgCTGGCCAGcs Combined Motif Reverse Complement Reverse Complement VVVVVCSSAYAVCAMCCMCKDBSMCCMMT VVCTGGCCAGBB VVVVCYGGCCAGBVMCCMCKDBSMCCMMT Direction: Forward Position #: 3 Overlap #: 12 Alignment: VVVVVCSSAYAVCAMCCMCKDBSMCCMMT --VVCTGGCCAGBB--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCwGGCCwGCss Original Motif Reverse Complement VVVVCYGGCCAGBVMCCMCKDBSMCCMMT BBGCTGGCCWGBB VVGCHKGSCHRVBVMCCMCKDBSMCCMMT Direction: Forward Position #: 1 Overlap #: 13 Alignment: VVVVCYGGCCAGBVMCCMCKDBSMCCMMT BBGCTGGCCWGBB---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Reverse Complement ARRGGYSVDRGRGGRBBVMDGSCYDGCVV GGYGCTGTCCATGGTGCTGAA ARRGGYSVDRGRGGGBHVCTGKCCDDSGTGCTGAA Direction: Forward Position #: 15 Overlap #: 15 Alignment: ARRGGYSVDRGRGGRBBVMDGSCYDGCVV------ --------------GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 71 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wyATTTTAww wtATTTTTAww Original Motif Original Motif DHATTTTADD DHATTTTTADD DHATTTTWADD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHATTTTADD- DHATTTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAwAAww Reverse Complement Original Motif DDTWAAAATHD DDTAAWAAHH DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTWAAAATHD DDTAAWAAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Original Motif Original Motif DDTAAAAATHD DDTAAAWAHH DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAATHD DDTAAAWAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif DDTAAAAATHD WWAAAAAAWH DWWAAAAAWHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAATHD WWAAAAAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dwCTTTTCwy Reverse Complement Original Motif DHWTTTTTWWD DHCTTTTCHH DHCTTTTYWHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHWTTTTTWWD DHCTTTTCHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Reverse Complement Original Motif DHWKAAAAGHD HHTTTWAAADD DHTTWAAAAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHWKAAAAGHD HHTTTWAAADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Reverse Complement Reverse Complement DHTTTTWAAHD DBTATGTAHH DHTWTKTAHHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHTTTTWAAHD DBTATGTAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Original Motif Reverse Complement DHTWTKTAHHD HTGTTTTTGHH HHKTTTTWGHH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHTWTKTAHHD HTGTTTTTGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Reverse Complement Original Motif HHCWAAAAYHH AAACAAAACAA HHAMAAAACHH Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHCWAAAAYHH AAACAAAACAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Reverse Complement HHGTTTTRTHH TTTTTTTTTTT TTKTTTTTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHGTTTTRTHH TTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 72 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCKCwsCGss ssCGCksCGss Original Motif Original Motif BVCGCWSCGBV VVCGCKSCGBB BVCGCTSCGBB Direction: Backward Position #: 1 Overlap #: 11 Alignment: BVCGCWSCGBV VVCGCKSCGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGMsGRGCGss Original Motif Reverse Complement BVCGCTSCGBB BBCGCCCSGCVV BVCGCHCCGCVV Direction: Forward Position #: 1 Overlap #: 11 Alignment: BVCGCTSCGBB- BBCGCCCSGCVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sssCGssGCsss Original Motif Reverse Complement BVCGCHCCGCVV SSSGCSSCGSSS BBCGCBSCGCVV Direction: Forward Position #: 1 Overlap #: 12 Alignment: BVCGCHCCGCVV SSSGCSSCGSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCTswGCCms Original Motif Reverse Complement BBCGCBSCGCVV BDGGCTSAGCBV BVSGCBSMGCBV Direction: Forward Position #: 1 Overlap #: 12 Alignment: BBCGCBSCGCVV BDGGCTSAGCBV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGGsYCGss Original Motif Original Motif BVSGCBSMGCBV BSCGGSCCGSV BBCGSBCCGCVV Direction: Forward Position #: 1 Overlap #: 11 Alignment: BVSGCBSMGCBV BSCGGSCCGSV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif BBCGSBCCGCVV DGVBCABTGDWGCGKRRCSR BBVGVBCMGBGVWGCGKRRCSR Direction: Forward Position #: 3 Overlap #: 10 Alignment: BBCGSBCCGCVV---------- --DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCrCYyYCGss Original Motif Original Motif BBVGVBCMGBGVWGCGKRRCSR BBCRCCYCCGBB BBCGCBCCSGSVWGCGKRRCSR Direction: Forward Position #: 1 Overlap #: 12 Alignment: BBVGVBCMGBGVWGCGKRRCSR BBCRCCYCCGBB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Reverse Complement Original Motif MSGKKRCGCWVSCSGGBGCGBB SSCGCCSCCGCCCSS MSGKBVCGCHSCCGSSSSCGBB Direction: Forward Position #: 5 Overlap #: 15 Alignment: MSGKKRCGCWVSCSGGBGCGBB ----SSCGCCSCCGCCCSS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Reverse Complement Original Motif BBCGSSSSCGGSDGCGBBYCSR HVCCAGTGCABD BBCSMGTGCRBVDGCGBBYCSR Direction: Forward Position #: 1 Overlap #: 12 Alignment: BBCGSSSSCGGSDGCGBBYCSR HVCCAGTGCABD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGsCwsCss Original Motif Original Motif BBCSMGTGCRBVDGCGBBYCSR BBCGSCWSCBB BBCGVSTGCVBVDGCGBBYCSR Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBCSMGTGCRBVDGCGBBYCSR BBCGSCWSCBB----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 73 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGsCTCss ssCGsCwsCss Reverse Complement Reverse Complement BBGAGSCGVV BBGSWGSCGBB BBGGAGSCGVB Direction: Forward Position #: 2 Overlap #: 10 Alignment: -BBGAGSCGVV BBGSWGSCGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss Combined Motif Original Motif Original Motif BBGGAGSCGVB SSSCGSSGCSSS BBGSMGSCGCSSS Direction: Forward Position #: 2 Overlap #: 10 Alignment: BBGGAGSCGVB-- -SSSCGSSGCSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCksCGss Reverse Complement Original Motif SSSGCGSCRSCBB VVCGCKSCGBB SVCGCGSCGSSBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: SSSGCGSCRSCBB VVCGCKSCGBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGGsYCGss Original Motif Reverse Complement SVCGCGSCGSSBB VSCGGSCCGSB VSCGSSCCGSSBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: SVCGCGSCGSSBB VSCGGSCCGSB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Reverse Complement Original Motif BBSSCGGSSCGSV SSCGCCSCCGCCCSS BBSSCGSCSCSVCCCSS Direction: Forward Position #: 3 Overlap #: 11 Alignment: BBSSCGGSSCGSV---- --SSCGCCSCCGCCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGssCGss Combined Motif Original Motif Reverse Complement BBSSCGSCSCSVCCCSS VSCGSSCGSB BBSSCSGSSCGVSCCSS Direction: Forward Position #: 4 Overlap #: 10 Alignment: BBSSCGSCSCSVCCCSS ---VSCGSSCGSB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGrGCGss Reverse Complement Original Motif SSGGSVCGSSCSGSSBB VSCGRGCGBV VSSGVSCGSSCSGSSBB Direction: Forward Position #: 1 Overlap #: 10 Alignment: SSGGSVCGSSCSGSSBB VSCGRGCGBV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGMsGRGCGss Original Motif Original Motif VSSGVSCGSSCSGSSBB VVGCSGGGCGBB VVGCSGGGCGBSCSGSSBB Direction: Forward Position #: 3 Overlap #: 10 Alignment: --VSSGVSCGSSCSGSSBB VVGCSGGGCGBB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCKCwsCGss Combined Motif Original Motif Reverse Complement VVGCSGGGCGBSCSGSSBB VBCGSWGCGVB VVGVSSGGMGCGSSGSSBB Direction: Forward Position #: 4 Overlap #: 11 Alignment: VVGCSGGGCGBSCSGSSBB ---VBCGSWGCGVB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCrCYyYCGss Original Motif Reverse Complement VVGVSSGGMGCGSSGSSBB BBCGGKGGMGBB VVSGGBGGMGBGSSGSSBB Direction: Forward Position #: 1 Overlap #: 12 Alignment: VVGVSSGGMGCGSSGSSBB BBCGGKGGMGBB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 74 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- twTACATAvw wwTAAAwAww Reverse Complement Reverse Complement DBTATGTAHH HHTWTTTADD HHTATKTAHH Direction: Backward Position #: 1 Overlap #: 10 Alignment: DBTATGTAHH HHTWTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Original Motif Reverse Complement HHTATKTAHH DHKATGTKTKTGTD DHTATGTRTKTGTD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHTATKTAHH---- DHKATGTKTKTGTD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAwAAww Original Motif Reverse Complement DHTATGTRTKTGTD HHTTWTTADD DHTWTKTADDTGTD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHTATGTRTKTGTD HHTTWTTADD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Reverse Complement Reverse Complement HACADDTARAWAHD DDTAAAAATHD HDYAAAWAWAWAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: HACADDTARAWAHD DDTAAAAATHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wyATTTTAww Original Motif Reverse Complement HDYAAAWAWAWAHD DDTAAAATHD HDTAAAAWDHWAHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HDYAAAWAWAWAHD DDTAAAATHD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wrTGTATACAyw Original Motif Original Motif HDTAAAAWDHWAHD HDTGTATACAHD HDTRWAWAHAHAHD Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDTAAAAWDHWAHD HDTGTATACAHD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Combined Motif Original Motif Original Motif HDTRWAWAHAHAHD DHAYAYAYRTGTGTRTDH HDTRHAYAYATRTRTRTDH Direction: Forward Position #: 2 Overlap #: 13 Alignment: HDTRWAWAHAHAHD----- -DHAYAYAYRTGTGTRTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif HDTRHAYAYATRTRTRTDH WWAAAAAAWH DDWAAAAAHATRTRTRTDH Direction: Forward Position #: 1 Overlap #: 10 Alignment: HDTRHAYAYATRTRTRTDH WWAAAAAAWH--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Original Motif Original Motif DDWAAAAAHATRTRTRTDH HHTTTWAAADD HHTWWAAAADHRTRTRTDH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DDWAAAAAHATRTRTRTDH HHTTTWAAADD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Reverse Complement HHTWWAAAADHRTRTRTDH DVTGCATGCATGBH DHTKMAWRMATGTVTRTDH Direction: Forward Position #: 1 Overlap #: 14 Alignment: HHTWWAAAADHRTRTRTDH DVTGCATGCATGBH----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 75 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yayAyAyACATrya ryayAyAyrtGTRTrTry Original Motif Original Motif HACAYAYACATRHD DHAYAYAYRTGTGTRTDH TDHHAYAYAYAYRTRTRD Direction: Backward Position #: 4 Overlap #: 14 Alignment: -HACAYAYACATRHD--- DHAYAYAYRTGTGTRTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Original Motif TDHHAYAYAYAYRTRTRD HVCATGCATGCABD HDCATRCAYRCAYRTRTRD Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TDHHAYAYAYAYRTRTRD HVCATGCATGCABD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Original Motif HDCATRCAYRCAYRTRTRD CAYACACACACACA CACAYACAYACACATRTRD Direction: Forward Position #: 1 Overlap #: 14 Alignment: HDCATRCAYRCAYRTRTRD CAYACACACACACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Original Motif Original Motif CACAYACAYACACATRTRD CACACAVRCACACA CACACACACACACATRTRD Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACAYACAYACACATRTRD CACACAVRCACACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Reverse Complement DKAMATGTGTGTGTGTGTG VRVDGGHACAVDDKGTHCTDWH GTGBDVVRKDWSWGKGTGTVRVDGG Direction: Backward Position #: 4 Overlap #: 16 Alignment: ------DKAMATGTGTGTGTGTGTG ---VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 76 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwWAAAAAwa wtATTTTTAww Reverse Complement Original Motif HWTTTTTTWW DHATTTTTADD HATTTTTWWDD Direction: Backward Position #: 1 Overlap #: 10 Alignment: -HWTTTTTTWW DHATTTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAwAAww Original Motif Reverse Complement HATTTTTWWDD HHTTWTTADD HATTTTTADDD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HATTTTTWWDD HHTTWTTADD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Original Motif Reverse Complement HATTTTTADDD HHTWTTTADD HHTTTTTADDD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HATTTTTADDD HHTWTTTADD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Original Motif DDDTAAAAAHH AAAAAAAAAAA AAAWAAAAAWA Direction: Forward Position #: 1 Overlap #: 11 Alignment: DDDTAAAAAHH AAAAAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Reverse Complement Reverse Complement TWTTTTTWTTT HTGTTTTTGHH TTKTTTTTKTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TWTTTTTWTTT HTGTTTTTGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wyATTTTAww Original Motif Original Motif TTKTTTTTKTT DHATTTTADD DHDTTTTWDDT Direction: Forward Position #: 1 Overlap #: 10 Alignment: TTKTTTTTKTT DHATTTTADD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Original Motif Reverse Complement DHDTTTTWDDT TTGTTTTGTTT HHGTTTTRTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHDTTTTWDDT TTGTTTTGTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Reverse Complement Original Motif AAAMAAAACHH HHTTTWAAADD HHWTWAAAAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAMAAAACHH HHTTTWAAADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dwCTTTTCwy Reverse Complement Original Motif DHTTTTWAWHH DHCTTTTCHH DHCTTTTCHHH Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHTTTTWAWHH DHCTTTTCHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Original Motif Original Motif DHCTTTTCHHH TKKTTTGTTTTTTT DTBTTTTVWTTTTTT Direction: Forward Position #: 2 Overlap #: 10 Alignment: DHCTTTTCHHH---- -TKKTTTGTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 77 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGCTswGCCms sssCGssGCsss Original Motif Original Motif VBGCTSAGCCHB SSSCGSSGCSSS VBGCKSVGCCVB Direction: Forward Position #: 1 Overlap #: 12 Alignment: VBGCTSAGCCHB SSSCGSSGCSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGMsGRGCGss Reverse Complement Reverse Complement BVGGCVSYGCBV BBCGCCCSGCVV BVSGCMCYGCVV Direction: Forward Position #: 1 Overlap #: 12 Alignment: BVGGCVSYGCBV BBCGCCCSGCVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif BVSGCMCYGCVV BBVGCCBVGGCCTV BVSGCVCCGCGGCCTV Direction: Forward Position #: 3 Overlap #: 10 Alignment: BVSGCMCYGCVV---- --BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Original Motif Reverse Complement BVSGCVCCGCGGCCTV DBTGCACTGGVD BBBGCACYGSVVCCTV Direction: Forward Position #: 1 Overlap #: 12 Alignment: BVSGCVCCGCGGCCTV DBTGCACTGGVD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Original Motif BBBGCACYGSVVCCTV BBTCTKTKTCHB TKTCHBCHYCKGBBBGCACYGS Direction: Backward Position #: 7 Overlap #: 6 Alignment: BBBGCACYGSVVCCTV------ ----------BBTCTKTKTCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCwGGCCwGCss Combined Motif Reverse Complement Reverse Complement SCMGTGCVBBCRGMHGVHGARA BBGCTGGCCWGBB SCMGBGCHGGCMDGBBVHGARA Direction: Forward Position #: 4 Overlap #: 13 Alignment: SCMGTGCVBBCRGMHGVHGARA ---BBGCTGGCCWGBB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif TKTCHBBVCHRGCCHGCVCYGS TTCAGCACCATGGACAGCKCC TTBWSHACCVHGGMCAGCDCYGS Direction: Forward Position #: 2 Overlap #: 20 Alignment: -TKTCHBBVCHRGCCHGCVCYGS TTCAGCACCATGGACAGCKCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Original Motif TTBWSHACCVHGGMCAGCDCYGS HWDAGHACRHHVTGTHCCHVMV HTHAGHACVHHGKGYASCDVHSS Direction: Forward Position #: 1 Overlap #: 22 Alignment: TTBWSHACCVHGGMCAGCDCYGS HWDAGHACRHHVTGTHCCHVMV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement HTHAGHACVHHGKGYASCDVHSS MSGKKRCGCWDCABTGBBCD MSGKBDCRSHWCMVHGBVCDSCDVHSS Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----HTHAGHACVHHGKGYASCDVHSS MSGKKRCGCWDCABTGBBCD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif MSGKBDCRSHWCMVHGBVCDSCDVHSS BTRGGDCARAGGKCA MSGKBDHRSDDCAVAGGBCASCDVHSS Direction: Forward Position #: 6 Overlap #: 15 Alignment: MSGKBDCRSHWCMVHGBVCDSCDVHSS -----BTRGGDCARAGGKCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 78 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss ssGMsGRGCGss Reverse Complement Reverse Complement SSSGCSSCGSSS BBCGCCCSGCVV BBCGCSCCGCVV Direction: Forward Position #: 1 Overlap #: 12 Alignment: SSSGCSSCGSSS BBCGCCCSGCVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCTswGCCms Reverse Complement Original Motif VVGCGGSGCGBB VBGCTSAGCCHB VVGCKSVGCSVB Direction: Forward Position #: 1 Overlap #: 12 Alignment: VVGCGGSGCGBB VBGCTSAGCCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Reverse Complement Original Motif BVSGCBSRGCVV SSCGCCSCCGCCCSS BVSGCGCMGCCVCCCSS Direction: Forward Position #: 3 Overlap #: 10 Alignment: BVSGCBSRGCVV----- --SSCGCCSCCGCCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Reverse Complement BVSGCGCMGCCVCCCSS VAGGCCBBGGCVBB VAGGCCSVGSCVCCCSS Direction: Forward Position #: 1 Overlap #: 14 Alignment: BVSGCGCMGCCVCCCSS VAGGCCBBGGCVBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCrCYyYCGss Reverse Complement Reverse Complement SSGGGVGSCVSGGCCTV BBCGGKGGMGBB BSCGGGBGSSBBGGCCTV Direction: Forward Position #: 2 Overlap #: 11 Alignment: -SSGGGVGSCVSGGCCTV BBCGGKGGMGBB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Original Motif Original Motif BSCGGGBGSSBBGGCCTV HVCCAGTGCABD BVCSRGTGCRBBGGCCTV Direction: Forward Position #: 1 Overlap #: 12 Alignment: BSCGGGBGSSBBGGCCTV HVCCAGTGCABD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement BVCSRGTGCRBBGGCCTV MGGTCAGGGTGACCTRDBHV BVCVRGTSMVBBKGMCYBRDBHV Direction: Forward Position #: 4 Overlap #: 15 Alignment: BVCSRGTGCRBBGGCCTV----- ---MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif BVCVRGTSMVBBKGMCYBRDBHV DGVBCABTGDWGCGKRRCSR BVCVRGBSMVBBKGHSCGKRVCVR Direction: Forward Position #: 5 Overlap #: 19 Alignment: BVCVRGTSMVBBKGMCYBRDBHV- ----DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Reverse Complement BVCVRGBSMVBBKGHSCGKRVCVR VRVDGGHACAVDDKGTHCTDWH BVCVRGDBVDGHDSASBDKGTHCKDWH Direction: Forward Position #: 6 Overlap #: 19 Alignment: BVCVRGBSMVBBKGHSCGKRVCVR--- -----VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sgCTGGCCAGcs Original Motif Reverse Complement BVCVRGDBVDGHDSASBDKGTHCKDWH VVCTGGCCAGBB VVCBGGCCAGBBDSASBDKGTHCKDWH Direction: Forward Position #: 1 Overlap #: 12 Alignment: BVCVRGDBVDGHDSASBDKGTHCKDWH VVCTGGCCAGBB--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 79 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACACACACACA CACACACACACA Original Motif Original Motif CACACACACACA CACACACACACA CACACACACACA Direction: Backward Position #: 1 Overlap #: 12 Alignment: CACACACACACA CACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Reverse Complement Reverse Complement TGTGTGTGTGTG TGTGTGTGTGTKTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGTG-- TGTGTGTGTGTKTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Reverse Complement Original Motif CACACACACACACA CACACAVRCACACA CACACACACACACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACACACACACA CACACAVRCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Original Motif Original Motif CACACACACACACA HACAYAYACATRHD CACACACACAYACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACACACACACA HACAYAYACATRHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Original Motif Original Motif CACACACACAYACA DHAYAYAYRTGTGTRTDH DYAYACAYAYRTRYRTDH Direction: Forward Position #: 2 Overlap #: 14 Alignment: -CACACACACAYACA--- DHAYAYAYRTGTGTRTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Reverse Complement DYAYACAYAYRTRYRTDH VHGARAYAGAVV VHGAVAYASAHVTRYRTDH Direction: Forward Position #: 2 Overlap #: 11 Alignment: -DYAYACAYAYRTRYRTDH VHGARAYAGAVV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Original Motif VHGAVAYASAHVTRYRTDH HVCATGCATGCABD HVCAKRCAYRCAHVTRYRTDH Direction: Forward Position #: 3 Overlap #: 12 Alignment: --VHGAVAYASAHVTRYRTDH HVCATGCATGCABD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Reverse Complement Reverse Complement HDAKMKABDTGKMTGKRTGBH BGRRRGRGGRTGRTTYGGGG BVDRKRGRGRTGKHTBGRKGBH Direction: Forward Position #: 2 Overlap #: 19 Alignment: -HDAKMKABDTGKMTGKRTGBH BGRRRGRGGRTGRTTYGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Reverse Complement Reverse Complement HVCYMCVAHYCAMCKCMYKHVB AAAAAAACAAARRA AAAAMMMCAAAHVAMCKCMYKHVB Direction: Forward Position #: 3 Overlap #: 12 Alignment: --HVCYMCVAHYCAMCKCMYKHVB AAAAAAACAAARRA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yrTGTGCACAyr Reverse Complement Reverse Complement BVDRKRGRGRTVHTTTGYYYTTTT BBTGTGCACAVV CACAVVBBTKKKBVDRKRGRGRTVHTTTGY Direction: Backward Position #: 7 Overlap #: 6 Alignment: BVDRKRGRGRTVHTTTGYYYTTTT------ ------------------BBTGTGCACAVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 80 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCwGGCCwGCss ESR1 Reverse Complement Reverse Complement BBGCTGGCCWGBB MGGTCAGGGTGACCTRDBHV MGGTCAVGCTGRCCWGBBHV Direction: Forward Position #: 6 Overlap #: 13 Alignment: -----BBGCTGGCCWGBB-- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Reverse Complement MGGTCAVGCTGRCCWGBBHV GGYGCTGTCCATGGTGCTGAA MGGTSVBGCTGDCCWDGGTVCTGAA Direction: Forward Position #: 5 Overlap #: 16 Alignment: MGGTCAVGCTGRCCWGBBHV----- ----GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Reverse Complement MGGTSVBGCTGDCCWDGGTVCTGAA DVTGCATGCATGBH DMKGYVTGSMTGDCCWDGGTVCTGAA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -MGGTSVBGCTGDCCWDGGTVCTGAA DVTGCATGCATGBH------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif DMKGYVTGSMTGDCCWDGGTVCTGAA DGVBCABTGDWGCGKRRCSR DRDGCABBSVTGBVYDDSSDVCTGAA Direction: Forward Position #: 1 Overlap #: 20 Alignment: DMKGYVTGSMTGDCCWDGGTVCTGAA DGVBCABTGDWGCGKRRCSR------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Reverse Complement Original Motif TTCAGVDSSHDKVBCABSBVTGCDMD HWDAGHACRHHVTGTHCCHVMV HTHAGHACRHHVBGYWCCBVHVCDMD Direction: Forward Position #: 1 Overlap #: 22 Alignment: TTCAGVDSSHDKVBCABSBVTGCDMD HWDAGHACRHHVTGTHCCHVMV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Reverse Complement Original Motif DRDGVDVBGGWKCVVHDMGTDCTDAH SSCGCCSCCGCCCSS BVCGCBSBSGYBCVBHDMGTDCTDAH Direction: Forward Position #: 1 Overlap #: 15 Alignment: DRDGVDVBGGWKCVVHDMGTDCTDAH SSCGCCSCCGCCCSS----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Reverse Complement HTHAGHACRHHBVGBKCSBSBGCGVB BGRRRGRGGRTGRTTYGGGG HTHRGVRSRVGGTGGKYBGGGGCGVB Direction: Forward Position #: 3 Overlap #: 20 Alignment: HTHAGHACRHHBVGBKCSBSBGCGVB --BGRRRGRGGRTGRTTYGGGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sgCTGGCCAGcs Reverse Complement Original Motif BVCGCCCCVMRCCACCVMSKBCKDAH BBCTGGCCAGVV BVCKSSCCARVVCACCVMSKBCKDAH Direction: Forward Position #: 1 Overlap #: 12 Alignment: BVCGCCCCVMRCCACCVMSKBCKDAH BBCTGGCCAGVV-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCTswGCCms Original Motif Original Motif BVCKSSCCARVVCACCVMSKBCKDAH VBGCTSAGCCHB VBGCTSVSCMVVVCACCVMSKBCKDAH Direction: Forward Position #: 2 Overlap #: 11 Alignment: -BVCKSSCCARVVCACCVMSKBCKDAH VBGCTSAGCCHB--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ccCCAGTGCAbr Combined Motif Original Motif Original Motif VBGCTSVSCMVVVCACCVMSKBCKDAH HVCCAGTGCABD VBGCTVVCCMGTGCAVVVMSKBCKDAH Direction: Forward Position #: 6 Overlap #: 12 Alignment: VBGCTSVSCMVVVCACCVMSKBCKDAH -----HVCCAGTGCABD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 81 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwTAAwAAww wwTAAAwAww Original Motif Original Motif DDTAAWAAHH DDTAAAWAHH DDTAAAAAHH Direction: Backward Position #: 1 Overlap #: 10 Alignment: DDTAAWAAHH DDTAAAWAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Reverse Complement DDTAAAAAHH DDTAAAAATHD DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAAHH- DDTAAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif DDTAAAAATHD WWAAAAAAWH DWWAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAATHD WWAAAAAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wyATTTTAww Original Motif Reverse Complement DWWAAAAATHD DDTAAAATHD DDTAAAAWHHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DWWAAAAATHD DDTAAAATHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Reverse Complement Reverse Complement DHHWTTTTADD DDTTTWAAAHH DDTTTTWWAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHHWTTTTADD DDTTTWAAAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Reverse Complement Original Motif DHTWWAAAADD HHCAAAAACAH HHYAAAAAMHH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHTWWAAAADD HHCAAAAACAH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dwCTTTTCwy Original Motif Reverse Complement HHYAAAAAMHH DHGAAAAGHD DHBAAAARHDH Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHYAAAAAMHH DHGAAAAGHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Original Motif Original Motif DHBAAAARHDH HHTACATAVD DHTAMAWAHDH Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHBAAAARHDH HHTACATAVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAATTAATTAww Original Motif Reverse Complement DHTAMAWAHDH DHTAATTAATTADH DHTAAWTAATTADH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHTAMAWAHDH--- DHTAATTAATTADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Reverse Complement HDTAATTAWTTAHD TTTTTTTTTTT TTTTTTTWTTTAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: HDTAATTAWTTAHD TTTTTTTTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 82 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- rmACAGCAGsr ssCGsCwsCss Original Motif Reverse Complement VVACAGCAGVD BBGSWGSCGBB VVRCAGCMGVV Direction: Forward Position #: 1 Overlap #: 11 Alignment: VVACAGCAGVD BBGSWGSCGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 83 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwTAAAwAww wwTAAwAAww Original Motif Original Motif DDTAAAWAHH DDTAAWAAHH DDTAAAAAHH Direction: Backward Position #: 1 Overlap #: 10 Alignment: DDTAAAWAHH DDTAAWAAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Reverse Complement DDTAAAAAHH DDTAAAAATHD DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAAHH- DDTAAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif DDTAAAAATHD WWAAAAAAWH DWWAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAATHD WWAAAAAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Original Motif Original Motif DWWAAAAATHD HHTACATAVD DHTAMAWAHHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DWWAAAAATHD HHTACATAVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wyATTTTAww Original Motif Reverse Complement DHTAMAWAHHD DDTAAAATHD DHTAAAAWHDD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHTAMAWAHHD DDTAAAATHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Original Motif Original Motif DHTAAAAWHDD HHCAAAAACAH HHYAAAAACHH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHTAAAAWHDD HHCAAAAACAH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Original Motif Original Motif HHYAAAAACHH HHTTTWAAADD HHTWWAAAMHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHYAAAAACHH HHTTTWAAADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwTAATTAATTAww Combined Motif Reverse Complement Reverse Complement DHYTTTWWAHH DHTAATTAATTADH DHHTWWTTAATTADH Direction: Forward Position #: 2 Overlap #: 10 Alignment: DHYTTTWWAHH---- -DHTAATTAATTADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dwCTTTTCwy Original Motif Original Motif DHHTWWTTAATTADH DHCTTTTCHH DHCTTTTYAHTTADH Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHHTWWTTAATTADH DHCTTTTCHH----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Reverse Complement DHCTTTTYAHTTADH TTTTTTTTTTT TTYTTTTTTHTTADH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHCTTTTYAHTTADH TTTTTTTTTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 84 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsAGCTACwy Ar Reverse Complement Original Motif VHGTAGCTVD HWDAGHACRHHVTGTHCCHVMV VTGTHCCHVMVDHRKARCWBHH Direction: Backward Position #: 12 Overlap #: 10 Alignment: -VHGTAGCTVD----------- HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Reverse Complement VTGTHCCHVMVDHRKARCWBHH GGYGCTGTCCATGGTGCTGAA VKGTDCYGTCCHHGGWGCTGHH Direction: Forward Position #: 2 Overlap #: 21 Alignment: VTGTHCCHVMVDHRKARCWBHH -GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement VKGTDCYGTCCHHGGWGCTGHH MSGKKRCGCWDCABTGBBCD VKGTVCBBKMCDCDKHRCTGHHCD Direction: Forward Position #: 5 Overlap #: 18 Alignment: VKGTDCYGTCCHHGGWGCTGHH-- ----MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCksCGss Reverse Complement Reverse Complement HGHDCAGKDYHGHGYRBBGBACRV BBCGSRGCGVV BGCGSAGCGBVGHGYRBBGBACRV Direction: Forward Position #: 1 Overlap #: 11 Alignment: HGHDCAGKDYHGHGYRBBGBACRV BBCGSRGCGVV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCKCwsCGss Combined Motif Original Motif Reverse Complement BGCGSAGCGBVGHGYRBBGBACRV VBCGSWGCGVB BVCGSAGCGBBGHGYRBBGBACRV Direction: Forward Position #: 1 Overlap #: 11 Alignment: BGCGSAGCGBVGHGYRBBGBACRV VBCGSWGCGVB------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rmACAGCAGsr Reverse Complement Reverse Complement VKGTVCBBKMCDCBBCGCTSCGVB DVCTGCTGTVB VBSTGCTGTVHDCBBCGCTSCGVB Direction: Forward Position #: 1 Overlap #: 11 Alignment: VKGTVCBBKMCDCBBCGCTSCGVB DVCTGCTGTVB------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 85 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wtATTTTTAww aaCAAAAACaa Reverse Complement Original Motif DDTAAAAATHD HHCAAAAACAH HDYAAAAAYHH Direction: Backward Position #: 1 Overlap #: 11 Alignment: DDTAAAAATHD HHCAAAAACAH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Original Motif Original Motif HDYAAAAAYHH HHTTTWAAADD HHTWWAAAHHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: HDYAAAAAYHH HHTTTWAAADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Original Motif HHTWWAAAHHD AAAAAAAAAAA AAWAAAAAAAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHTWWAAAHHD AAAAAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Original Motif Original Motif AAWAAAAAAAA AAACAAAACAA AAAMAAAAMAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAWAAAAAAAA AAACAAAACAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Reverse Complement Original Motif TTRTTTTRTTT BBTCTKTKTCHB BHKYTTTKTCHB Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTRTTTTRTTT- BBTCTKTKTCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAATTAATTAww Reverse Complement Reverse Complement VHGAYAAAMRHV DHTAATTAATTADH HHKAAWWAAWWADH Direction: Forward Position #: 1 Overlap #: 12 Alignment: VHGAYAAAMRHV-- DHTAATTAATTADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif HDTWWTTWWTTRHH TGAMCTTTGMMCYT TGAMCTTTRVHHHTTWWTTRHH Direction: Forward Position #: 9 Overlap #: 6 Alignment: --------HDTWWTTWWTTRHH TGAMCTTTGMMCYT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Reverse Complement Reverse Complement HHKAAWWAAHDHBMAAAGRTCA AAAAAAACAAARRA HHKAAAAAAADHAAAAARRTCA Direction: Forward Position #: 5 Overlap #: 14 Alignment: HHKAAWWAAHDHBMAAAGRTCA ----AAAAAAACAAARRA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Original Motif Original Motif HHKAAAAAAADHAAAAARRTCA HACAYAYACATRHD HDYAHAHAMATVHAAAARRTCA Direction: Forward Position #: 1 Overlap #: 14 Alignment: HHKAAAAAAADHAAAAARRTCA HACAYAYACATRHD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Combined Motif Reverse Complement Original Motif TGAMMTTTTHBATRTHTHTMDH DHAYAYAYRTGTGTRTDH TGAMHDYWYABATGTDTDTVHH Direction: Forward Position #: 4 Overlap #: 18 Alignment: TGAMMTTTTHBATRTHTHTMDH ---DHAYAYAYRTGTGTRTDH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 86 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- aaCAAAAACaa aaACAAAACaa Reverse Complement Reverse Complement HTGTTTTTGHH TTGTTTTGTTT TTGTTTTKKTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: HTGTTTTTGHH TTGTTTTGTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Original Motif TTGTTTTKKTT DHATTTTTADD HHRTTTTTRDH Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTGTTTTKKTT DHATTTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Original Motif HDKAAAAAKHH AAAAAAAAAAA AAAAAAAADAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: HDKAAAAAKHH AAAAAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Reverse Complement Reverse Complement TTDTTTTTTTT DHKATGTKTKTGTD THKWTKTTTKTGTD Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTDTTTTTTTT--- DHKATGTKTKTGTD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement THKWTKTTTKTGTD TGTGTGTGTGTG TBTKTGTKTGTGTD Direction: Forward Position #: 1 Overlap #: 12 Alignment: THKWTKTTTKTGTD TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Original Motif TBTKTGTKTGTGTD BBTCTKTKTCHB TBTCTKTKTSTBTD Direction: Forward Position #: 1 Overlap #: 12 Alignment: TBTKTGTKTGTGTD BBTCTKTKTCHB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement TBTCTKTKTSTBTD TGTGTGTGTGTG TGTSTGTGTGTGTD Direction: Forward Position #: 1 Overlap #: 12 Alignment: TBTCTKTKTSTBTD TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Reverse Complement Original Motif HACACACACASACA CAYACACACACACA CACACACACACACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: HACACACACASACA CAYACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Reverse Complement TGTGTGTGTGTGTG BGRRRGRGGRTGRTTYGGGG TGTGKGTGKGKGTGRTTYGGGG Direction: Forward Position #: 3 Overlap #: 12 Alignment: TGTGTGTGTGTGTG-------- --BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Original Motif Original Motif TGTGKGTGKGKGTGRTTYGGGG TKKTTTGTTTTTTT TGTGTKTKTKKDTKKTTTGGGG Direction: Forward Position #: 5 Overlap #: 14 Alignment: TGTGKGTGKGKGTGRTTYGGGG ----TKKTTTGTTTTTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 87 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGGsYCGss ssCGCksCGss Original Motif Reverse Complement BSCGGSCCGSV BBCGSRGCGVV BSCGGVSCGSV Direction: Forward Position #: 1 Overlap #: 11 Alignment: BSCGGSCCGSV BBCGSRGCGVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sssCGssGCsss Original Motif Reverse Complement BSCGGVSCGSV SSSGCSSCGSSS SSSGCGSCGCGSV Direction: Forward Position #: 3 Overlap #: 10 Alignment: --BSCGGVSCGSV SSSGCSSCGSSS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCKCwsCGss Reverse Complement Original Motif VSCGCGSCGCSSS BVCGCWSCGBV BVCGCDSCGCSSS Direction: Forward Position #: 1 Overlap #: 11 Alignment: VSCGCGSCGCSSS BVCGCWSCGBV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGMsGRGCGss Original Motif Reverse Complement BVCGCDSCGCSSS BBCGCCCSGCVV BVCGCVCCGCVVS Direction: Forward Position #: 1 Overlap #: 12 Alignment: BVCGCDSCGCSSS BBCGCCCSGCVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sgCTGGCCAGcs Original Motif Original Motif BVCGCVCCGCVVS BBCTGGCCAGVV BBCKSGCCRSVVS Direction: Forward Position #: 1 Overlap #: 12 Alignment: BVCGCVCCGCVVS BBCTGGCCAGVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGsCwsCss Reverse Complement Reverse Complement SVVSKGGCSRGBB BBGSWGSCGBB BVGSWGGCGVGBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: SVVSKGGCSRGBB BBGSWGSCGBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCwGGCCwGCss Original Motif Reverse Complement BVGSWGGCGVGBB BBGCTGGCCWGBB BBGCWGGCSDGBB Direction: Forward Position #: 1 Overlap #: 13 Alignment: BVGSWGGCGVGBB BBGCTGGCCWGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCrCYyYCGss Reverse Complement Original Motif BBCDSGCCWGCBB BBCRCCYCCGBB BBCDCSCCMGCBB Direction: Forward Position #: 1 Overlap #: 12 Alignment: BBCDSGCCWGCBB BBCRCCYCCGBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Original Motif Original Motif BBCDCSCCMGCBB SSCGCCSCCGCCCSS BBCGCCCCCGCCCSS Direction: Forward Position #: 1 Overlap #: 13 Alignment: BBCDCSCCMGCBB-- SSCGCCSCCGCCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Reverse Complement SSGGGCGGGGGCGBB VRVDGGHACAVDDKGTHCTDWH SSVGVVGGBDSMGBBKGTHCTDWH Direction: Forward Position #: 3 Overlap #: 13 Alignment: SSGGGCGGGGGCGBB--------- --VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 88 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss ssCGCCsCCrCCCss Reverse Complement Reverse Complement BBCGGKGGMGBB SSGGGCGGSGGCGSS GGCGGGGGCGBBSSG Direction: Backward Position #: 1 Overlap #: 12 Alignment: ---BBCGGKGGMGBB SSGGGCGGSGGCGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Original Motif Original Motif GGCGGGGGCGBBSSG VVGCSGGGCGBB GGCGGVGGVGCGBBG Direction: Forward Position #: 3 Overlap #: 12 Alignment: GGCGGGGGCGBBSSG --VVGCSGGGCGBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sssCGssGCsss Original Motif Original Motif GGCGGVGGVGCGBBG SSSCGSSGCSSS SGSSGSSGCGSGBBG Direction: Forward Position #: 1 Overlap #: 12 Alignment: GGCGGVGGVGCGBBG SSSCGSSGCSSS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Original Motif CBBCSCGCSSCSSCS BBVGCCBVGGCCTV CBVSSCGCGGCCTSS Direction: Forward Position #: 1 Overlap #: 14 Alignment: CBBCSCGCSSCSSCS BBVGCCBVGGCCTV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Original Motif SSAGGCCGCGSSVBG DGVBCABTGDWGCGKRRCSR DGVBBVVBGVVGCGBVVCSR Direction: Forward Position #: 5 Overlap #: 15 Alignment: ----SSAGGCCGCGSSVBG- DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sgCTGGCCAGcs Combined Motif Original Motif Reverse Complement DGVBBVVBGVVGCGBVVCSR VVCTGGCCAGBB DGVBCTGGSCAGVGBVVCSR Direction: Forward Position #: 3 Overlap #: 12 Alignment: DGVBBVVBGVVGCGBVVCSR --VVCTGGCCAGBB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Original Motif MSGVVBCVCTGSCCAGBVCD CCCCMAAMCAMCCMCMMMCV MCSMCHMVCCRSCCMSHVMVV Direction: Forward Position #: 2 Overlap #: 19 Alignment: MSGVVBCVCTGSCCAGBVCD- -CCCCMAAMCAMCCMCMMMCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCwGGCCwGCss Reverse Complement Original Motif BVRVDSYGGSKGGBYDGRSGR BBCWGGCCAGCBB BBCDGGCCRGSBBGBYDGRSGR Direction: Forward Position #: 2 Overlap #: 12 Alignment: -BVRVDSYGGSKGGBYDGRSGR BBCWGGCCAGCBB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Original Motif Reverse Complement BBCDGGCCRGSBBGBYDGRSGR DBTGCACTGGVD BBYGSRCYGGVBBGBYDGRSGR Direction: Forward Position #: 1 Overlap #: 12 Alignment: BBCDGGCCRGSBBGBYDGRSGR DBTGCACTGGVD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Reverse Complement Original Motif MCSMCHMVCBVVCCMGKSCMBB GSMMCCYARGGKKKC GVMMCCYARSGDKCCMGKSCMBB Direction: Forward Position #: 2 Overlap #: 14 Alignment: -MCSMCHMVCBVVCCMGKSCMBB GSMMCCYARGGKKKC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 89 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ccCCmCACCcc ssCGCCsCCrCCCss Original Motif Original Motif HBCCMCACCHH SSCGCCSCCGCCCSS SSCVCCCCCACCCBS Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---HBCCMCACCHH- SSCGCCSCCGCCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGsCwsCss Original Motif Original Motif SSCVCCCCCACCCBS BBCGSCWSCBB BBCGSCHSCVCCCBS Direction: Forward Position #: 1 Overlap #: 11 Alignment: SSCVCCCCCACCCBS BBCGSCWSCBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Reverse Complement SBGGGBGSDGSCGBB BGRRRGRGGRTGRTTYGGGG SBBGGDGGDGGVKGVTTYGGGG Direction: Forward Position #: 3 Overlap #: 13 Alignment: SBGGGBGSDGSCGBB------- --BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rrAGGGGGArr Original Motif Original Motif SBBGGDGGDGGVKGVTTYGGGG VVAGGGGGAVV VVAGGGGGAGGVKGVTTYGGGG Direction: Forward Position #: 1 Overlap #: 11 Alignment: SBBGGDGGDGGVKGVTTYGGGG VVAGGGGGAVV----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCrCYyYCGss Original Motif Reverse Complement VVAGGGGGAGGVKGVTTYGGGG BBCGGKGGMGBB VVCGGGGGMGVVKGVTTYGGGG Direction: Forward Position #: 1 Overlap #: 12 Alignment: VVAGGGGGAGGVKGVTTYGGGG BBCGGKGGMGBB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Original Motif CCCCMAAVCRVVCYCCCCCGVV TTCAGCACCATGGACAGCKCC CCCCMAAVCRBBCHSCMCCRBGGACAGCKCC Direction: Forward Position #: 11 Overlap #: 12 Alignment: CCCCMAAVCRVVCYCCCCCGVV--------- ----------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCTswGCCms Reverse Complement Reverse Complement GGYGCTGTCCVKGGYGSHGVVKGVTTYGGGG BDGGCTSAGCBV BVBGCTSWSCVBGGYGSHGVVKGVTTYGGGG Direction: Forward Position #: 1 Overlap #: 12 Alignment: GGYGCTGTCCVKGGYGSHGVVKGVTTYGGGG BDGGCTSAGCBV------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Reverse Complement Reverse Complement CCCCMAAVCRBBCHSCMCCBVGSWSAGCBVB YCGCCCACGCH CCVCMMACSVHBCHSCMCCBVGSWSAGCBVB Direction: Forward Position #: 1 Overlap #: 11 Alignment: CCCCMAAVCRBBCHSCMCCBVGSWSAGCBVB YCGCCCACGCH-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Original Motif Reverse Complement CCVCMMACSVHBCHSCMCCBVGSWSAGCBVB BBCGCCCSGCVV CCVCCVMCCVVCCVSCMCCBVGSWSAGCBVB Direction: Forward Position #: 3 Overlap #: 12 Alignment: CCVCMMACSVHBCHSCMCCBVGSWSAGCBVB --BBCGCCCSGCVV----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Reverse Complement CCVCCVMCCVVCCVSCMCCBVGSWSAGCBVB MGCCCCCTGMCA MGCCCCCDVMCVVCCVSCMCCBVGSWSAGCBVB Direction: Forward Position #: 3 Overlap #: 10 Alignment: --CCVCCVMCCVVCCVSCMCCBVGSWSAGCBVB MGCCCCCTGMCA--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 90 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGsCwsCss ssCrCYyYCGss Reverse Complement Reverse Complement BBGSWGSCGBB BBCGGKGGMGBB BBCGSDGGCGBB Direction: Forward Position #: 2 Overlap #: 11 Alignment: -BBGSWGSCGBB BBCGGKGGMGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Reverse Complement Original Motif BBCGCCDSCGBB HBCCMCACCHH VBCSCCACCBBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBCGCCDSCGBB HBCCMCACCHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss Combined Motif Reverse Complement Original Motif BBBGGTGGSGBV SSSCGSSGCSSS BBBGGYGSSGCSSS Direction: Forward Position #: 3 Overlap #: 10 Alignment: BBBGGTGGSGBV-- --SSSCGSSGCSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Original Motif Reverse Complement BBBGGYGSSGCSSS SSGGGCGGSGGCGSS BBSGGCGGSGSCGSS Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBBGGYGSSGCSSS- SSGGGCGGSGGCGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 91 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Ar Original Motif Original Motif SSCGCCSCCGCCCSS HWDAGHACRHHVTGTHCCHVMV MVVMCRCCSYSKCCCBVHWDAG Direction: Backward Position #: 3 Overlap #: 15 Alignment: -----SSCGCCSCCGCCCSS-- HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Original Motif MVVMCRCCSYSKCCCBVHWDAG CCCCMAAMCAMCCMCMMMCV CCCCMMMMCACCCMCHMCCVVHWDAG Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----MVVMCRCCSYSKCCCBVHWDAG CCCCMAAMCAMCCMCMMMCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Original Motif CTDWHVVGGRHGRGGGTGYYYYGGGG DGVBCABTGDWGCGKRRCSR DSDDHHVBGRDGSGKGRYGDYYYGGGG Direction: Forward Position #: 2 Overlap #: 19 Alignment: -CTDWHVVGGRHGRGGGTGYYYYGGGG DGVBCABTGDWGCGKRRCSR------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement CCCCMMMHCKMCYCSCDMCVVHDDDSD BAGGYCABHBTGACCKHV CCCCMVAGSBCMHCVYGACCBHDDDSD Direction: Forward Position #: 6 Overlap #: 18 Alignment: CCCCMMMHCKMCYCSCDMCVVHDDDSD -----BAGGYCABHBTGACCKHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement CCCCMVAGSBCMHCVYGACCBHDDDSD MGGTCAGGGTGACCTRDBHV CCCCMMRGBCMVBVBBRMCBDDVVVSD Direction: Forward Position #: 6 Overlap #: 20 Alignment: CCCCMVAGSBCMHCVYGACCBHDDDSD -----MGGTCAGGGTGACCTRDBHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif HSBBVDHVGRMBVVBBYGVCMYYGGGG BBVGCCBVGGCCTV HSBBVVBVGSCBVGGCCTVCMYYGGGG Direction: Forward Position #: 6 Overlap #: 14 Alignment: HSBBVDHVGRMBVVBBYGVCMYYGGGG -----BBVGCCBVGGCCTV-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Reverse Complement CCCCMMRGVAGGCCBBGSCVBVVVVSD CCCCCTTGGGCCCC CCCCMHDGGRSSCCBBGSCVBVVVVSD Direction: Forward Position #: 1 Overlap #: 14 Alignment: CCCCMMRGVAGGCCBBGSCVBVVVVSD CCCCCTTGGGCCCC------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Reverse Complement HSBBVVBVGSCBVGGSSMCCDHRGGGG TGRCCTKTGHCCKAB TSDCCTBTGVCCDRGSSMCCDHRGGGG Direction: Forward Position #: 1 Overlap #: 15 Alignment: HSBBVVBVGSCBVGGSSMCCDHRGGGG TGRCCTKTGHCCKAB------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Original Motif Original Motif TSDCCTBTGVCCDRGSSMCCDHRGGGG CCAGYYHVADCCRG YCRSYTBDRVCCDGGSSMCCDHRGGGG Direction: Forward Position #: 1 Overlap #: 14 Alignment: TSDCCTBTGVCCDRGSSMCCDHRGGGG CCAGYYHVADCCRG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCwGGCCwGCss Combined Motif Original Motif Reverse Complement YCRSYTBDRVCCDGGSSMCCDHRGGGG BBGCTGGCCWGBB YCRBHKCWGGCCWGBBSMCCDHRGGGG Direction: Forward Position #: 4 Overlap #: 13 Alignment: YCRSYTBDRVCCDGGSSMCCDHRGGGG ---BBGCTGGCCWGBB----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 92 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tyTCTkTkTCyy yayAyAyACATrya Reverse Complement Original Motif VHGARAYAGAVV HACAYAYACATRHD HAHASAHACAKAHV Direction: Forward Position #: 3 Overlap #: 12 Alignment: --VHGARAYAGAVV HACAYAYACATRHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Reverse Complement Reverse Complement BDTYTGTHTSTDTD TGTGTGTGTGTG TGTBTGTGTGTGTD Direction: Forward Position #: 1 Overlap #: 12 Alignment: BDTYTGTHTSTDTD TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 93 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- rrAGGGGGArr ssCrCYyYCGss Reverse Complement Original Motif VVTCCCCCTVV BBCRCCYCCGBB BVVYSCCCCYGV Direction: Backward Position #: 2 Overlap #: 11 Alignment: VVTCCCCCTVV- BBCRCCYCCGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Original Motif Original Motif BVVYSCCCCYGV HBCCMCACCHH VVCCCCMCCYVV Direction: Forward Position #: 1 Overlap #: 11 Alignment: BVVYSCCCCYGV HBCCMCACCHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Reverse Complement VVCCCCMCCYVV MGCCCCCTGMCA VBCCCCCYSHCV Direction: Forward Position #: 1 Overlap #: 12 Alignment: VVCCCCMCCYVV MGCCCCCTGMCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Original Motif VBCCCCCYSHCV CCCCMAAMCAMCCMCMMMCV CCCCMVMCCMCCCMCMMMCV Direction: Forward Position #: 5 Overlap #: 12 Alignment: ----VBCCCCCYSHCV---- CCCCMAAMCAMCCMCMMMCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Original Motif CCCCMVMCCMCCCMCMMMCV SSCGCCSCCGCCCSS CCCCVVCVCCCCCVCCCCSV Direction: Forward Position #: 5 Overlap #: 15 Alignment: CCCCMVMCCMCCCMCMMMCV ----SSCGCCSCCGCCCSS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Reverse Complement Original Motif BSGGGGVGGGGGVGVVGGGG HGCGTGGGCGK HGCGKGGGBGGGVGVVGGGG Direction: Forward Position #: 1 Overlap #: 11 Alignment: BSGGGGVGGGGGVGVVGGGG HGCGTGGGCGK--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGMsGRGCGss Original Motif Original Motif HGCGKGGGBGGGVGVVGGGG VVGCSGGGCGBB BGGSBGGGCGDGVGVVGGGG Direction: Forward Position #: 1 Overlap #: 12 Alignment: HGCGKGGGBGGGVGVVGGGG VVGCSGGGCGBB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Reverse Complement BGGSBGGGCGDGVGVVGGGG VHGARAYAGAVV YAGAVVVVGRRRBGGSBGGGCGDGVG Direction: Backward Position #: 7 Overlap #: 6 Alignment: BGGSBGGGCGDGVGVVGGGG------ --------------VHGARAYAGAVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 94 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCksCGss ssCKCwsCGss Original Motif Original Motif VVCGCKSCGBB BVCGCWSCGBV BVCGCTSCGBB Direction: Backward Position #: 1 Overlap #: 11 Alignment: VVCGCKSCGBB BVCGCWSCGBV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss Combined Motif Original Motif Original Motif BVCGCTSCGBB SSSCGSSGCSSS BVCGCKSCGCSSS Direction: Forward Position #: 2 Overlap #: 10 Alignment: BVCGCTSCGBB-- -SSSCGSSGCSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGGsYCGss Combined Motif Reverse Complement Original Motif SSSGCGSYGCGVB BSCGGSCCGSV SSSSCGGCSCGSV Direction: Forward Position #: 3 Overlap #: 11 Alignment: SSSGCGSYGCGVB --BSCGGSCCGSV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGMsGRGCGss Reverse Complement Reverse Complement VSCGSGCCGSSSS BBCGCCCSGCVV VVCGCSCCGCVVS Direction: Forward Position #: 1 Overlap #: 12 Alignment: VSCGSGCCGSSSS BBCGCCCSGCVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCTswGCCms Original Motif Reverse Complement VVCGCSCCGCVVS BDGGCTSAGCBV BVSGCHCMGCBVS Direction: Forward Position #: 1 Overlap #: 12 Alignment: VVCGCSCCGCVVS BDGGCTSAGCBV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCrCYyYCGss Original Motif Original Motif BVSGCHCMGCBVS BBCRCCYCCGBB BBCGCYCCSSBVS Direction: Forward Position #: 1 Overlap #: 12 Alignment: BVSGCHCMGCBVS BBCRCCYCCGBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Reverse Complement Reverse Complement SVBSSGGKGCGBB SSGGGCGGSGGCGSS SVBSGGGBGSSGGCGSS Direction: Forward Position #: 3 Overlap #: 11 Alignment: SVBSSGGKGCGBB---- --SSGGGCGGSGGCGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGsCwsCss Reverse Complement Original Motif SSCGCCSSCBCCCSBVS BBCGSCWSCBB BBCGSCHSCBCCCSBVS Direction: Forward Position #: 1 Overlap #: 11 Alignment: SSCGCCSSCBCCCSBVS BBCGSCWSCBB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif SVBSGGGBGSDGSCGBB DGVBCABTGDWGCGKRRCSR SVBVGVBHRSBGVHGVGKRRCSR Direction: Forward Position #: 4 Overlap #: 14 Alignment: SVBSGGGBGSDGSCGBB------ ---DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Original Motif SVBVGVBHRSBGVHGVGKRRCSR BBVGCCBVGGCCTV SBVGSBBVGGCSTVGVGKRRCSR Direction: Forward Position #: 1 Overlap #: 14 Alignment: SVBVGVBHRSBGVHGVGKRRCSR BBVGCCBVGGCCTV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 95 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACACACACACA CACACACACACA Original Motif Original Motif CACACACACACA CACACACACACA CACACACACACA Direction: Backward Position #: 1 Overlap #: 12 Alignment: CACACACACACA CACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Reverse Complement Reverse Complement TGTGTGTGTGTG TGTGTGTGTGTKTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGTG-- TGTGTGTGTGTKTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Reverse Complement Original Motif CACACACACACACA CACACAVRCACACA CACACACACACACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACACACACACA CACACAVRCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Original Motif Original Motif CACACACACACACA HACAYAYACATRHD CACACACACAYACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACACACACACA HACAYAYACATRHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Original Motif Original Motif CACACACACAYACA DHAYAYAYRTGTGTRTDH DYAYACAYAYRTRYRTDH Direction: Forward Position #: 2 Overlap #: 14 Alignment: -CACACACACAYACA--- DHAYAYAYRTGTGTRTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Reverse Complement DYAYACAYAYRTRYRTDH VHGARAYAGAVV VHGAVAYASAHVTRYRTDH Direction: Forward Position #: 2 Overlap #: 11 Alignment: -DYAYACAYAYRTRYRTDH VHGARAYAGAVV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Original Motif VHGAVAYASAHVTRYRTDH HVCATGCATGCABD HVCATRCAKRCAYRYRTDH Direction: Forward Position #: 1 Overlap #: 14 Alignment: VHGAVAYASAHVTRYRTDH HVCATGCATGCABD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Original Motif HVCATRCAKRCAYRYRTDH CCCCMAAMCAMCCMCMMMCV CCMCMAHVCAHMCMCVHMYVH Direction: Forward Position #: 3 Overlap #: 18 Alignment: --HVCATRCAKRCAYRYRTDH CCCCMAAMCAMCCMCMMMCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Reverse Complement Original Motif HBKYDBGYGRDTGBHTRGRGG TKKTTTGTTTTTTT WDKTTTGTKDKTKTHTRGRGG Direction: Forward Position #: 1 Overlap #: 14 Alignment: HBKYDBGYGRDTGBHTRGRGG TKKTTTGTTTTTTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yrTGTGCACAyr Combined Motif Original Motif Reverse Complement WDKTTTGTKDKTKTHTRGRGG BBTGTGCACAVV GGBKTGTGYAYAVVWDKTTTG Direction: Backward Position #: 3 Overlap #: 12 Alignment: WDKTTTGTKDKTKTHTRGRGG -------BBTGTGCACAVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 96 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yrTGTGCACAyr wrTGTATACAyw Original Motif Original Motif BVTGTGCACABV HDTGTATACAHD HVTGTRYACABD Direction: Backward Position #: 1 Overlap #: 12 Alignment: BVTGTGCACABV HDTGTATACAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Original Motif Reverse Complement HVTGTRYACABD VRVDGGHACAVDDKGTHCTDWH BRTGKGYACAVDDKGTHCTDWH Direction: Forward Position #: 1 Overlap #: 12 Alignment: HVTGTRYACABD---------- VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yayAyAyACATrya Combined Motif Original Motif Original Motif BRTGKGYACAVDDKGTHCTDWH HACAYAYACATRHD BRHDYRYACACATDGWHCTDWH Direction: Forward Position #: 3 Overlap #: 14 Alignment: BRTGKGYACAVDDKGTHCTDWH --HACAYAYACATRHD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Original Motif BRHDYRYACACATDGWHCTDWH HVCATGCATGCABD BDCATRCAYRCABDGWHCTDWH Direction: Forward Position #: 1 Overlap #: 14 Alignment: BRHDYRYACACATDGWHCTDWH HVCATGCATGCABD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Original Motif HWDAGHWCHVTGKMTGMATGDV BTRGGDCARAGGKCA VHDRGDHMVAKGKMWGMATGDV Direction: Forward Position #: 1 Overlap #: 15 Alignment: HWDAGHWCHVTGKMTGMATGDV BTRGGDCARAGGKCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Reverse Complement Reverse Complement BDCATRCWRRCYTBYDDCMDHV DBTGCACTGGVD BDYRYACTGGCBTBYDDCMDHV Direction: Forward Position #: 1 Overlap #: 12 Alignment: BDCATRCWRRCYTBYDDCMDHV DBTGCACTGGVD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Original Motif BDYRYACTGGCBTBYDDCMDHV CACACACACACA BACACACWSRCHTBYDDCMDHV Direction: Forward Position #: 1 Overlap #: 12 Alignment: BDYRYACTGGCBTBYDDCMDHV CACACACACACA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Original Motif BACACACWSRCHTBYDDCMDHV CACACACACACA CACACACACACATBYDDCMDHV Direction: Forward Position #: 1 Overlap #: 12 Alignment: BACACACWSRCHTBYDDCMDHV CACACACACACA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement VHDRGDHMVATGTGTGTGTGTG MGGTCAGGGTGACCTRDBHV MGGTCADGGTVACMTGKGTGTGTGTG Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----VHDRGDHMVATGTGTGTGTGTG MGGTCAGGGTGACCTRDBHV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCwGGCCwGCss Original Motif Original Motif MGGTCADGGTVACMTGKGTGTGTGTG BBCWGGCCAGCBB BBCKGKCMDGSDBACMTGKGTGTGTGTG Direction: Forward Position #: 3 Overlap #: 11 Alignment: --MGGTCADGGTVACMTGKGTGTGTGTG BBCWGGCCAGCBB--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 97 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Ar Reverse Complement Reverse Complement HDAMACACAKKTKTKTHD VRVDGGHACAVDDKGTHCTDWH HVKRHACACDKKKKTBTHDVRV Direction: Backward Position #: 2 Overlap #: 18 Alignment: ---HDAMACACAKKTKTKTHD- VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement HVKRHACACDKKKKTBTHDVRV MSGKKRCGCWDCABTGBBCD HVGDBACRCDKBDKTBBHHDRV Direction: Forward Position #: 1 Overlap #: 20 Alignment: HVKRHACACDKKKKTBTHDVRV MSGKKRCGCWDCABTGBBCD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfp423 Combined Motif Original Motif Original Motif HVGDBACRCDKBDKTBBHHDRV GSMMCCYARGGKKKC HVGSHACCCWDGGKTBHHHDRV Direction: Forward Position #: 3 Overlap #: 15 Alignment: HVGDBACRCDKBDKTBBHHDRV --GSMMCCYARGGKKKC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Reverse Complement Reverse Complement VMHDHDBAYCCHWGGGTDSCVD AKGYYCAAAGRTCA VMHDVDSHYCMAWGRKYASCVD Direction: Forward Position #: 5 Overlap #: 14 Alignment: VMHDHDBAYCCHWGGGTDSCVD ----AKGYYCAAAGRTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Reverse Complement HVGSTKYMCWTYGMHSHBHDRV TGRCCTKTGHCCKAB HVGSTGHCCTTTGVCCBHVDRV Direction: Forward Position #: 5 Overlap #: 15 Alignment: HVGSTKYMCWTYGMHSHBHDRV ----TGRCCTKTGHCCKAB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yayAyAyACATrya Combined Motif Reverse Complement Original Motif VMHVHVGGVCAAAGGHCASCVD HACAYAYACATRHD VMHBDHRBRCAMAKRHHASCVD Direction: Forward Position #: 4 Overlap #: 14 Alignment: VMHVHVGGVCAAAGGHCASCVD ---HACAYAYACATRHD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Original Motif VMHBDHRBRCAMAKRHHASCVD HVCATGCATGCABD HVCATRCATRCAHAKRHHASCVD Direction: Forward Position #: 2 Overlap #: 13 Alignment: -VMHBDHRBRCAMAKRHHASCVD HVCATGCATGCABD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Original Motif HVCATRCATRCAHAKRHHASCVD CAYACACACACACA CACAYACAYACACAKRHHASCVD Direction: Forward Position #: 1 Overlap #: 14 Alignment: HVCATRCATRCAHAKRHHASCVD CAYACACACACACA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Original Motif Original Motif CACAYACAYACACAKRHHASCVD CACACAVRCACACA CACACACACACACAKRHHASCVD Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACAYACAYACACAKRHHASCVD CACACAVRCACACA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Reverse Complement Reverse Complement HVGSTDHMRTGTGTGTGTGTGTG BGRRRGRGGRTGRTTYGGGG BVVGVKRVSRTGKKTBKGKGTGTG Direction: Forward Position #: 2 Overlap #: 19 Alignment: -HVGSTDHMRTGTGTGTGTGTGTG BGRRRGRGGRTGRTTYGGGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 98 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwTAATTAATTAww yayAyAyACATrya Original Motif Original Motif HDTAATTAATTAHD HACAYAYACATRHD HDYAHWTAMWTAHD Direction: Forward Position #: 1 Overlap #: 14 Alignment: HDTAATTAATTAHD HACAYAYACATRHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Original Motif HDYAHWTAMWTAHD HVCATGCATGCABD HDYATRYAHDYAHD Direction: Forward Position #: 1 Overlap #: 14 Alignment: HDYAHWTAMWTAHD HVCATGCATGCABD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Reverse Complement Original Motif DHTKHHTKMATKDH TKKTTTGTTTTTTT DHTKHWTTBWTKTTTT Direction: Forward Position #: 3 Overlap #: 12 Alignment: DHTKHHTKMATKDH-- --TKKTTTGTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wrTGTATACAyw Original Motif Reverse Complement DHTKHWTTBWTKTTTT DHTGTATACADH DHTGTATWCATDTTTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: DHTKHWTTBWTKTTTT DHTGTATACADH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Original Motif Reverse Complement DHTGTATWCATDTTTT DDTTTWAAAHH DDTTTTAWAHATDTTTT Direction: Forward Position #: 2 Overlap #: 10 Alignment: -DHTGTATWCATDTTTT DDTTTWAAAHH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Original Motif DDTTTTAWAHATDTTTT DHATTTTTADD DHWTTTWTAHHTDTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: DDTTTTAWAHATDTTTT DHATTTTTADD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Reverse Complement DHWTTTWTAHHTDTTTT TTTTTTTTTTT TTTTTTTTWHWTDTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHWTTTWTAHHTDTTTT TTTTTTTTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Original Motif Reverse Complement TTTTTTTTWHWTDTTTT HHTWTTTADD HHTTTTTWWDWTDTTTT Direction: Forward Position #: 1 Overlap #: 10 Alignment: TTTTTTTTWHWTDTTTT HHTWTTTADD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwTAAwAAww Combined Motif Original Motif Reverse Complement HHTTTTTWWDWTDTTTT HHTTWTTADD HHTWTTTWTTATDTTTT Direction: Forward Position #: 4 Overlap #: 10 Alignment: HHTTTTTWWDWTDTTTT ---HHTTWTTADD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Original Motif Reverse Complement HHTWTTTWTTATDTTTT DBTATGTAHH HHTATKTATHATDTTTT Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHTWTTTWTTATDTTTT DBTATGTAHH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 99 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sgCTGGCCAGcs ssCwGGCCwGCss Reverse Complement Reverse Complement VVCTGGCCAGBB BBGCTGGCCWGBB VGCTGGCCAGBBB Direction: Backward Position #: 1 Overlap #: 12 Alignment: -VVCTGGCCAGBB BBGCTGGCCWGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif BBBCTGGCCAGCV VDBHMAGGTCACCCTGACCY VBBCHRGSYMRCBCTGACCY Direction: Forward Position #: 1 Overlap #: 13 Alignment: BBBCTGGCCAGCV------- VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif MGGTCAGBGMRKSCMHGBBV TTCAGCACCATGGACAGCKCC TTCAGCACCAHGGWCAGBDCVKSCMHGBBV Direction: Forward Position #: 11 Overlap #: 11 Alignment: ----------MGGTCAGBGMRKSCMHGBBV TTCAGCACCATGGACAGCKCC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCrCYyYCGss Reverse Complement Reverse Complement VBBCHRGSYVGHBCTGWCCHTGGTGCTGAA BBCGGKGGMGBB VBCSBGGGCGVBBCTGWCCHTGGTGCTGAA Direction: Forward Position #: 1 Overlap #: 12 Alignment: VBBCHRGSYVGHBCTGWCCHTGGTGCTGAA BBCGGKGGMGBB------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Original Motif VBCSBGGGCGVBBCTGWCCHTGGTGCTGAA HWDAGHACRHHVTGTHCCHVMV VBHBDRGVMSRBBCTGTCCHHGVTGCTGAA Direction: Forward Position #: 3 Overlap #: 22 Alignment: VBCSBGGGCGVBBCTGWCCHTGGTGCTGAA --HWDAGHACRHHVTGTHCCHVMV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss Combined Motif Original Motif Original Motif VBHBDRGVMSRBBCTGTCCHHGVTGCTGAA SSSCGSSGCSSS VBVBBCGSVGCSBSTGTCCHHGVTGCTGAA Direction: Forward Position #: 3 Overlap #: 12 Alignment: VBHBDRGVMSRBBCTGTCCHHGVTGCTGAA --SSSCGSSGCSSS---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement TTCAGCAVCHDGGACASBSGCVSCGBBVBV MSGKKRCGCWDCABTGBBCD TTCAGCMSSDKRVRCWBSVVBGBCVBBVBV Direction: Forward Position #: 7 Overlap #: 20 Alignment: TTCAGCAVCHDGGACASBSGCVSCGBBVBV ------MSGKKRCGCWDCABTGBBCD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Reverse Complement Original Motif VBVBBVGBCBVBSBWGKVMYDSSYGCTGAA VVGCSGGGCGBB VVVGCSGGGCGBBBWGKVMYDSSYGCTGAA Direction: Forward Position #: 2 Overlap #: 12 Alignment: VBVBBVGBCBVBSBWGKVMYDSSYGCTGAA -VVGCSGGGCGBB----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Original Motif TTCAGCMSSDKRVRCWBBBCGCCCSGCVVV HVCATGCATGCABD BDCAKSCABGBRBDCWBBBCGCCCSGCVVV Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTCAGCMSSDKRVRCWBBBCGCCCSGCVVV HVCATGCATGCABD---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGGsYCGss Original Motif Reverse Complement BDCAKSCABGBRBDCWBBBCGCCCSGCVVV VSCGGSCCGSB BBCRKSCCGBBRBDCWBBBCGCCCSGCVVV Direction: Forward Position #: 1 Overlap #: 11 Alignment: BDCAKSCABGBRBDCWBBBCGCCCSGCVVV VSCGGSCCGSB------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 100 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wrTGTATACAyw yrTGTGCACAyr Original Motif Original Motif HDTGTATACAHD BVTGTGCACABV HVTGTRYACABD Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDTGTATACAHD BVTGTGCACABV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Reverse Complement HVTGTRYACABD DVTGCATGCATGBH BVTGYATRCATGBH Direction: Forward Position #: 1 Overlap #: 12 Alignment: HVTGTRYACABD-- DVTGCATGCATGBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Original Motif Original Motif BVTGYATRCATGBH HACAYAYACATRHD BVYRYAYACATRBV Direction: Forward Position #: 1 Overlap #: 14 Alignment: BVTGYATRCATGBH HACAYAYACATRHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Original Motif BVMATGTMTMKMBV HWDAGHACRHHVTGTHCCHVMV BVMATRKMWCDMHVTGTHCCHVMV Direction: Forward Position #: 3 Overlap #: 12 Alignment: BVMATGTMTMKMBV---------- --HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Reverse Complement Reverse Complement VRVDGGHACAVHYHGWYYMATRBV VHGARAYAGAVV VDGARRYASAVVYHGWYYMATRBV Direction: Forward Position #: 1 Overlap #: 12 Alignment: VRVDGGHACAVHYHGWYYMATRBV VHGARAYAGAVV------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Original Motif Original Motif VDGARRYASAVVYHGWYYMATRBV HVCCAGTGCABD VVSMAGTRCAVVYHGWYYMATRBV Direction: Forward Position #: 1 Overlap #: 12 Alignment: VDGARRYASAVVYHGWYYMATRBV HVCCAGTGCABD------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Original Motif VVSMAGTRCAVVYHGWYYMATRBV CACACACACACA VACAMRYACAVAYHGWYYMATRBV Direction: Forward Position #: 1 Overlap #: 12 Alignment: VVSMAGTRCAVVYHGWYYMATRBV CACACACACACA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAATTAATTAww Reverse Complement Original Motif BVMATRKMWCDMTVTGTKKRTGTV HDTAATTAATTAHD HDTAWKTAAYTAHDTGTKKRTGTV Direction: Forward Position #: 1 Overlap #: 14 Alignment: BVMATRKMWCDMTVTGTKKRTGTV HDTAATTAATTAHD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Reverse Complement Original Motif VACAMRYACAHHTAMTTARWTADH DHAYAYAYRTGTGTRTDH DHACACAYAYRTRTRHDTARWTADH Direction: Forward Position #: 2 Overlap #: 17 Alignment: -VACAMRYACAHHTAMTTARWTADH DHAYAYAYRTGTGTRTDH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Original Motif DHACACAYAYRTRTRHDTARWTADH TTCAGCACCATGGACAGCKCC RTRHDTARWTADHAHRSACASVBVYDHACACAYAYRTR Direction: Backward Position #: 14 Overlap #: 12 Alignment: ---------DHACACAYAYRTRTRHDTARWTADH -------------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 101 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAAAAAAAAAA yayAyAyACATrya Original Motif Original Motif HVCATGCATGCABD HACAYAYACATRHD HDCATRCAYRYAHD Direction: Forward Position #: 1 Overlap #: 14 Alignment: HVCATGCATGCABD HACAYAYACATRHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Original Motif Original Motif HDCATRCAYRYAHD DHAYAYAYRTGTGTRTDH DHACAYAYAYRTRTRTDH Direction: Forward Position #: 2 Overlap #: 14 Alignment: -HDCATRCAYRYAHD--- DHAYAYAYRTGTGTRTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement HDAKAKAMMTKTMTGTHD MSGKKRCGCWDCABTGBBCD MBRKDDMVCTKBMTKKHBCD Direction: Forward Position #: 1 Overlap #: 18 Alignment: HDAKAKAMMTKTMTGTHD-- MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 102 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAAAAAAAAAA Motif 26 Original Motif Reverse Complement AAAAAAAAAAA AAAAAAACAAARRA AAAAAAAMAAAAAA Direction: Forward Position #: 3 Overlap #: 11 Alignment: --AAAAAAAAAAA- AAAAAAACAAARRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Reverse Complement Reverse Complement TTTTTTYTTTTTTT TTGTTTTGTTT TTKTTTTKTTTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTTTTTYTTTTTTT TTGTTTTGTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Original Motif Reverse Complement TTKTTTTKTTTTTT HTGTTTTTGHH HTGTTTTTGTTTTTT Direction: Forward Position #: 2 Overlap #: 10 Alignment: -TTKTTTTKTTTTTT HTGTTTTTGHH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Original Motif HTGTTTTTGTTTTTT DHATTTTTADD HHRTTTTTRWHTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: HTGTTTTTGTTTTTT DHATTTTTADD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Original Motif HHRTTTTTRWHTTTT BBTCTKTKTCHB BHTYTTTTTCHTTTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: HHRTTTTTRWHTTTT BBTCTKTKTCHB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement BHTYTTTTTCHTTTT TGTGTGTGTGTG TBTBTKTKTSTBTTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: BHTYTTTTTCHTTTT TGTGTGTGTGTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement TBTBTKTKTSTBTTT TGTGTGTGTGTG TGTGTGTGTGTGTTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: TBTBTKTKTSTBTTT TGTGTGTGTGTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yayAyAyACATrya Combined Motif Original Motif Reverse Complement TGTGTGTGTGTGTTT DHKATGTKTKTGTD TGTVTRTGTGTKTKTD Direction: Forward Position #: 3 Overlap #: 13 Alignment: TGTGTGTGTGTGTTT- --DHKATGTKTKTGTD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wtTTWwAAAaw Combined Motif Original Motif Reverse Complement TGTVTRTGTGTKTKTD DDTTTWAAAHH TGTVTRTGTDTTTTWAAHH Direction: Forward Position #: 9 Overlap #: 8 Alignment: TGTVTRTGTGTKTKTD--- --------DDTTTWAAAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Combined Motif Reverse Complement Original Motif HHTTWAAAAHACAKAVACA DHAYAYAYRTGTGTRTDH HHTTAHAHAYAYRTRTRYAH Direction: Forward Position #: 3 Overlap #: 17 Alignment: HHTTWAAAAHACAKAVACA- --DHAYAYAYRTGTGTRTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 103 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ccCCAGTGCAbr ESR1 Original Motif Original Motif HVCCAGTGCABD VDBHMAGGTCACCCTGACCY VBBCCAGKKCABHCTGACCY Direction: Forward Position #: 2 Overlap #: 12 Alignment: -HVCCAGTGCABD------- VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Original Motif VBBCCAGKKCABHCTGACCY HWDAGHACRHHVTGTHCCHVMV VBHHHAGDRCABHVTGWCCYHVMV Direction: Forward Position #: 3 Overlap #: 18 Alignment: VBBCCAGKKCABHCTGACCY---- --HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCTswGCCms Reverse Complement Original Motif VRVDKGGWCAVDBTGKDCTDDDBV VBGCTSAGCCHB VVGCTSRGCCAVDBTGKDCTDDDBV Direction: Forward Position #: 2 Overlap #: 11 Alignment: -VRVDKGGWCAVDBTGKDCTDDDBV VBGCTSAGCCHB------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Original Motif Reverse Complement VVGCTSRGCCAVDBTGKDCTDDDBV BBCGCCCSGCVV VVGCBBCGCCMVGCBGKDCTDDDBV Direction: Forward Position #: 5 Overlap #: 12 Alignment: VVGCTSRGCCAVDBTGKDCTDDDBV ----BBCGCCCSGCVV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCwGGCCwGCss Combined Motif Original Motif Reverse Complement VVGCBBCGCCMVGCBGKDCTDDDBV BBGCTGGCCWGBB VVGCBBVGCYGGSCWGDDCTDDDBV Direction: Forward Position #: 6 Overlap #: 13 Alignment: VVGCBBCGCCMVGCBGKDCTDDDBV -----BBGCTGGCCWGBB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sssCGssGCsss Original Motif Original Motif VVGCBBVGCYGGSCWGDDCTDDDBV SSSCGSSGCSSS VVGCGSSGCBSSSCWGDDCTDDDBV Direction: Forward Position #: 1 Overlap #: 12 Alignment: VVGCBBVGCYGGSCWGDDCTDDDBV SSSCGSSGCSSS------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Original Motif VVGCGSSGCBSSSCWGDDCTDDDBV BTRGGDCARAGGKCA BBRSGBCRMVGGBCAGDDCTDDDBV Direction: Forward Position #: 1 Overlap #: 15 Alignment: VVGCGSSGCBSSSCWGDDCTDDDBV BTRGGDCARAGGKCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Reverse Complement VBHHHAGHDCTGVCCBRKGBCSMVB GGYGCTGTCCATGGTGCTGAA VBHHHRGHDCTGHCCHDGGTSCYGVA Direction: Forward Position #: 6 Overlap #: 20 Alignment: VBHHHAGHDCTGVCCBRKGBCSMVB- -----GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCrCYyYCGss Reverse Complement Original Motif TBCMGSACCDHGGHCAGHDCMDDDBV BBCRCCYCCGBB BBCRSCHCCGHGGHCAGHDCMDDDBV Direction: Forward Position #: 1 Overlap #: 12 Alignment: TBCMGSACCDHGGHCAGHDCMDDDBV BBCRCCYCCGBB-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement BBCRSCHCCGHGGHCAGHDCMDDDBV MSGKKRCGCWDCABTGBBCD MSGKKDCRCBHCMGHGBHCAGHDCMDDDBV Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----BBCRSCHCCGHGGHCAGHDCMDDDBV MSGKKRCGCWDCABTGBBCD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 104 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wtTTWwAAAaw wtATTTTTAww Reverse Complement Original Motif DDTTTWAAAHH DHATTTTTADD DHWTTTWWAHH Direction: Backward Position #: 1 Overlap #: 11 Alignment: DDTTTWAAAHH DHATTTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wrTGTATACAyw Reverse Complement Reverse Complement HHTWWAAAWHD DHTGTATACADH DHTDWAWAHADH Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHTWWAAAWHD- DHTGTATACADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAATTAATTAww Original Motif Reverse Complement DHTDWAWAHADH DHTAATTAATTADH DHTAWWTAAWTADH Direction: Forward Position #: 1 Overlap #: 12 Alignment: DHTDWAWAHADH-- DHTAATTAATTADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Reverse Complement HDTAWTTAWWTAHD TTTTTTTTTTT TTTWTTTWTTTAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: HDTAWTTAWWTAHD TTTTTTTTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Original Motif Reverse Complement TTTWTTTWTTTAHD HTGTTTTTGHH TTKTTTTTKTTAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTTWTTTWTTTAHD HTGTTTTTGHH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yrTGTGCACAyr Reverse Complement Reverse Complement DHTAAYAAAAAYAA BBTGTGCACAVV DDTRTBMAMAAHAA Direction: Forward Position #: 1 Overlap #: 12 Alignment: DHTAAYAAAAAYAA BBTGTGCACAVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Reverse Complement Original Motif TTDTTRTRBAMADD TKKTTTGTTTTTTT TTKTTTTGHWYWTDT Direction: Forward Position #: 2 Overlap #: 13 Alignment: TTDTTRTRBAMADD- -TKKTTTGTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Reverse Complement Original Motif ADAWMWHCAAAAYAA HWDAGHACRHHVTGTHCCHVMV ADAAVAACAHAVYRWHCCHVMV Direction: Forward Position #: 1 Overlap #: 15 Alignment: ADAWMWHCAAAAYAA------- HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Original Motif Original Motif ADAAVAACAHAVYRWHCCHVMV AAACAAAACAA AAACAAAACAHAVYRWHCCHVMV Direction: Forward Position #: 2 Overlap #: 10 Alignment: -ADAAVAACAHAVYRWHCCHVMV AAACAAAACAA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Reverse Complement AAACAAAACAHAVYRWHCCHVMV AKGYYCAAAGRTCA AAACAAAACAHAVDGHHCMAAVVTCA Direction: Forward Position #: 13 Overlap #: 11 Alignment: AAACAAAACAHAVYRWHCCHVMV--- ------------AKGYYCAAAGRTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-20-2016 14:49:39 Runtime: 837.987 seconds MOTIFSIM is written by Ngoc Tam L. Tran