**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.1 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 4 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Phylogenetic tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # DREME_DM721.txt 16 1 MEME-ChIP_DM721.txt 11 2 PScanChIP_DM721.txt 37 3 RSAT_peak-motifs_DM721.txt 40 4 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 30 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ZEB1 RORA_1 Original Motif Reverse Complement CACCTD TGACCTDVWT VWTSACCTDT Direction: Backward Position #: 4 Overlap #: 6 Alignment: -CACCTD--- TGACCTDVWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif VWTSACCTDT TTCAGCACCATGGACAGCKCC TTSAKSACCWDKGACAGCKCC Direction: Forward Position #: 3 Overlap #: 10 Alignment: --VWTSACCTDT--------- TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Original Motif Original Motif TTSAKSACCWDKGACAGCKCC HBCCMCACCHH BBCMVCACCHHKGACAGCKCC Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTSAKSACCWDKGACAGCKCC HBCCMCACCHH---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rrAGGGGGArr Original Motif Reverse Complement BBCMVCACCHHKGACAGCKCC VVTCCCCCTVV HHYCCCMCYHHKGACAGCKCC Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBCMVCACCHHKGACAGCKCC VVTCCCCCTVV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb Combined Motif Reverse Complement Original Motif GGYGCTGTCRDDMGRGGGMDD CACGTG GGYGCTGTCRVACGTGGGMDD Direction: Forward Position #: 11 Overlap #: 6 Alignment: GGYGCTGTCRDDMGRGGGMDD ----------CACGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Arnt Combined Motif Reverse Complement Original Motif HHYCCCACGTVKGACAGCKCC CACGTG HHYCMCGYGTVKGACAGCKCC Direction: Forward Position #: 4 Overlap #: 6 Alignment: HHYCCCACGTVKGACAGCKCC ---CACGTG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 73 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGsCTCss ssCGsCwsCss Reverse Complement Reverse Complement BBGAGSCGVV BBGSWGSCGBB BBGGAGSCGVB Direction: Forward Position #: 2 Overlap #: 10 Alignment: -BBGAGSCGVV BBGSWGSCGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sssCGssGCsss Original Motif Reverse Complement BBGGAGSCGVB SSSGCSSCGSSS BBSGMGSCGSVS Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBGGAGSCGVB- SSSGCSSCGSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCksCGss Combined Motif Original Motif Reverse Complement BBSGMGSCGSVS BBCGSRGCGVV BBSGCGSCGCGSV Direction: Forward Position #: 3 Overlap #: 10 Alignment: BBSGMGSCGSVS- --BBCGSRGCGVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGGsYCGss Reverse Complement Reverse Complement VSCGCGSCGCSBB VSCGGSCCGSB VSCGSSCCGSSBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: VSCGCGSCGCSBB VSCGGSCCGSB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Original Motif Original Motif VSCGSSCCGSSBB SSCGCCSCCGCCCSS VSCGCCSCSVCCCSS Direction: Forward Position #: 1 Overlap #: 13 Alignment: VSCGSSCCGSSBB-- SSCGCCSCCGCCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGssCGss Reverse Complement Reverse Complement SSGGGVSGSGGCGSV VSCGSSCGSB VSCGSSCGGSGGCGSV Direction: Forward Position #: 2 Overlap #: 9 Alignment: -SSGGGVSGSGGCGSV VSCGSSCGSB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGrGCGss Original Motif Original Motif VSCGSSCGGSGGCGSV VSCGRGCGBV VSCGGGCGSSGGCGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCGSSCGGSGGCGSV VSCGRGCGBV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGMsGRGCGss Reverse Complement Reverse Complement VSCGCCSSCGCCCGSV BBCGCCCSGCVV VBCGCCCSSSSVCGSV Direction: Forward Position #: 1 Overlap #: 12 Alignment: VSCGCCSSCGCCCGSV BBCGCCCSGCVV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCKCwsCGss Original Motif Original Motif VBCGCCCSSSSVCGSV BVCGCWSCGBV BVCGCHCCGSVVCGSV Direction: Forward Position #: 1 Overlap #: 11 Alignment: VBCGCCCSSSSVCGSV BVCGCWSCGBV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Reverse Complement Reverse Complement VSCGVVSCGGDGCGVB BBCGGKGGMGBB VSCGCGGBGGVGCGVB Direction: Forward Position #: 3 Overlap #: 12 Alignment: VSCGVVSCGGDGCGVB --BBCGGKGGMGBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 68 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dwCTTTTCwy wyATTTTAww Reverse Complement Reverse Complement DHGAAAAGHD DDTAAAATHD DHKAAAAKHD Direction: Backward Position #: 1 Overlap #: 10 Alignment: DHGAAAAGHD DDTAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAwAAww Original Motif Original Motif DHKAAAAKHD DDTAAWAAHH DHTAAAADHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHKAAAAKHD DDTAAWAAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif DHTAAAADHD WWAAAAAAWH DWWAAAAAHH Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHTAAAADHD WWAAAAAAWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Reverse Complement Reverse Complement HHTTTTTWWD HHTWTTTADD HHTTTTTADD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHTTTTTWWD HHTWTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Reverse Complement Reverse Complement DDTAAAAAHH DDTAAAAATHD DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAAHH- DDTAAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 18 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Motif 2 Original Motif Original Motif AMACA CACACACA AMACACAC Direction: Backward Position #: 1 Overlap #: 5 Alignment: ---AMACA CACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Original Motif AMACACAC CACACACACACA CACACACACACA Direction: Forward Position #: 2 Overlap #: 8 Alignment: -AMACACAC--- CACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Reverse Complement Reverse Complement TGTGTGTGTGTG TGTGTGTGTGTKTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGTG-- TGTGTGTGTGTKTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement TGTGTGTGTGTGTG TGTGTGTGTGTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGTGTG TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Original Motif Reverse Complement TGTGTGTGTGTGTG TGTGTGKVTGTGTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGTGTGTGTGTGTG TGTGTGKVTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- aaACAAAACaa Combined Motif Original Motif Reverse Complement TGTGTGTGTGTGTG TTGTTTTGTTT TGTGTGTBKKTKTGTTT Direction: Forward Position #: 7 Overlap #: 8 Alignment: TGTGTGTGTGTGTG--- ------TTGTTTTGTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Reverse Complement Original Motif AAACARARYBACACACA HHCAAAAACAH AAMMAAAACHACACACA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAACARARYBACACACA HHCAAAAACAH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Reverse Complement Original Motif TGTGTGTHGTTTTYRTT DHAYAYAYRTGTGTRTDH DHAYAYAYRTGTGTGTDKTTTTYRTT Direction: Forward Position #: 10 Overlap #: 9 Alignment: ---------TGTGTGTHGTTTTYRTT DHAYAYAYRTGTGTRTDH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wrTGTATACAyw Original Motif Original Motif DHAYAYAYRTGTGTGTDKTTTTYRTT HDTGTATACAHD HDTRTAYACATDTGTGTDKTTTTYRTT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -DHAYAYAYRTGTGTGTDKTTTTYRTT HDTGTATACAHD--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Original Motif AAMMAAAAYDACACAHATGTMTAMADH AAAASAAA AAAAMAAAYDACACAHATGTMTAMADH Direction: Forward Position #: 1 Overlap #: 8 Alignment: AAMMAAAAYDACACAHATGTMTAMADH AAAASAAA------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 71 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wyATTTTAww wtATTTTTAww Original Motif Original Motif DHATTTTADD DHATTTTTADD DHATTTTWADD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHATTTTADD- DHATTTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAwAAww Reverse Complement Original Motif DDTWAAAATHD DDTAAWAAHH DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTWAAAATHD DDTAAWAAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Original Motif Original Motif DDTAAAAATHD DDTAAAWAHH DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAATHD DDTAAAWAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif DDTAAAAATHD WWAAAAAAWH DWWAAAAAWHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAATHD WWAAAAAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dwCTTTTCwy Reverse Complement Original Motif DHWTTTTTWWD DHCTTTTCHH DHCTTTTYWHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHWTTTTTWWD DHCTTTTCHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Reverse Complement Original Motif DHWKAAAAGHD HHTTTWAAADD DHTTWAAAAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHWKAAAAGHD HHTTTWAAADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Reverse Complement Reverse Complement DHTTTTWAAHD DBTATGTAHH DHTWTKTAHHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHTTTTWAAHD DBTATGTAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Original Motif Reverse Complement DHTWTKTAHHD HTGTTTTTGHH HHKTTTTWGHH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHTWTKTAHHD HTGTTTTTGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Reverse Complement Original Motif HHCWAAAAYHH AAACAAAACAA HHAMAAAACHH Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHCWAAAAYHH AAACAAAACAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Reverse Complement HHGTTTTRTHH TTTTTTTTTTT TTKTTTTTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHGTTTTRTHH TTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 76 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwWAAAAAwa wtATTTTTAww Reverse Complement Original Motif HWTTTTTTWW DHATTTTTADD HATTTTTWWDD Direction: Backward Position #: 1 Overlap #: 10 Alignment: -HWTTTTTTWW DHATTTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAwAAww Original Motif Reverse Complement HATTTTTWWDD HHTTWTTADD HATTTTTADDD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HATTTTTWWDD HHTTWTTADD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Original Motif Reverse Complement HATTTTTADDD HHTWTTTADD HHTTTTTADDD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HATTTTTADDD HHTWTTTADD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Original Motif DDDTAAAAAHH AAAAAAAAAAA AAAWAAAAAWA Direction: Forward Position #: 1 Overlap #: 11 Alignment: DDDTAAAAAHH AAAAAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Reverse Complement Reverse Complement TWTTTTTWTTT HTGTTTTTGHH TTKTTTTTKTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TWTTTTTWTTT HTGTTTTTGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wyATTTTAww Original Motif Original Motif TTKTTTTTKTT DHATTTTADD DHDTTTTWDDT Direction: Forward Position #: 1 Overlap #: 10 Alignment: TTKTTTTTKTT DHATTTTADD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Original Motif Reverse Complement DHDTTTTWDDT TTGTTTTGTTT HHGTTTTRTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHDTTTTWDDT TTGTTTTGTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Reverse Complement Original Motif AAAMAAAACHH HHTTTWAAADD HHWTWAAAAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAMAAAACHH HHTTTWAAADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dwCTTTTCwy Reverse Complement Original Motif DHTTTTWAWHH DHCTTTTCHH DHCTTTTCHHH Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHTTTTWAWHH DHCTTTTCHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Original Motif Original Motif DHCTTTTCHHH TKKTTTGTTTTTTT DTBTTTTVWTTTTTT Direction: Forward Position #: 2 Overlap #: 10 Alignment: DHCTTTTCHHH---- -TKKTTTGTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 83 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwTAAAwAww wwTAAwAAww Original Motif Original Motif DDTAAAWAHH DDTAAWAAHH DDTAAAAAHH Direction: Backward Position #: 1 Overlap #: 10 Alignment: DDTAAAWAHH DDTAAWAAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Reverse Complement DDTAAAAAHH DDTAAAAATHD DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAAHH- DDTAAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif DDTAAAAATHD WWAAAAAAWH DWWAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAATHD WWAAAAAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Original Motif Original Motif DWWAAAAATHD HHTACATAVD DHTAMAWAHHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DWWAAAAATHD HHTACATAVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wyATTTTAww Original Motif Reverse Complement DHTAMAWAHHD DDTAAAATHD DHTAAAAWHDD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHTAMAWAHHD DDTAAAATHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Original Motif Original Motif DHTAAAAWHDD HHCAAAAACAH HHYAAAAACHH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHTAAAAWHDD HHCAAAAACAH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Original Motif Original Motif HHYAAAAACHH HHTTTWAAADD HHTWWAAAMHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHYAAAAACHH HHTTTWAAADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwTAATTAATTAww Combined Motif Reverse Complement Reverse Complement DHYTTTWWAHH DHTAATTAATTADH DHHTWWTTAATTADH Direction: Forward Position #: 2 Overlap #: 10 Alignment: DHYTTTWWAHH---- -DHTAATTAATTADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dwCTTTTCwy Original Motif Original Motif DHHTWWTTAATTADH DHCTTTTCHH DHCTTTTYAHTTADH Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHHTWWTTAATTADH DHCTTTTCHH----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Reverse Complement DHCTTTTYAHTTADH TTTTTTTTTTT TTYTTTTTTHTTADH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHCTTTTYAHTTADH TTTTTTTTTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 81 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwTAAwAAww wwTAAAwAww Original Motif Original Motif DDTAAWAAHH DDTAAAWAHH DDTAAAAAHH Direction: Backward Position #: 1 Overlap #: 10 Alignment: DDTAAWAAHH DDTAAAWAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Reverse Complement DDTAAAAAHH DDTAAAAATHD DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAAHH- DDTAAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif DDTAAAAATHD WWAAAAAAWH DWWAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAATHD WWAAAAAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wyATTTTAww Original Motif Reverse Complement DWWAAAAATHD DDTAAAATHD DDTAAAAWHHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DWWAAAAATHD DDTAAAATHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Reverse Complement Reverse Complement DHHWTTTTADD DDTTTWAAAHH DDTTTTWWAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHHWTTTTADD DDTTTWAAAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Reverse Complement Original Motif DHTWWAAAADD HHCAAAAACAH HHYAAAAAMHH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHTWWAAAADD HHCAAAAACAH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dwCTTTTCwy Original Motif Reverse Complement HHYAAAAAMHH DHGAAAAGHD DHBAAAARHDH Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHYAAAAAMHH DHGAAAAGHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Original Motif Original Motif DHBAAAARHDH HHTACATAVD DHTAMAWAHDH Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHBAAAARHDH HHTACATAVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAATTAATTAww Original Motif Reverse Complement DHTAMAWAHDH DHTAATTAATTADH DHTAAWTAATTADH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHTAMAWAHDH--- DHTAATTAATTADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Reverse Complement HDTAATTAWTTAHD TTTTTTTTTTT TTTTTTTWTTTAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: HDTAATTAWTTAHD TTTTTTTTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 90 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGsCwsCss ssCrCYyYCGss Reverse Complement Reverse Complement BBGSWGSCGBB BBCGGKGGMGBB BBCGSDGGCGBB Direction: Forward Position #: 2 Overlap #: 11 Alignment: -BBGSWGSCGBB BBCGGKGGMGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Reverse Complement Original Motif BBCGCCDSCGBB HBCCMCACCHH VBCSCCACCBBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBCGCCDSCGBB HBCCMCACCHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss Combined Motif Reverse Complement Original Motif BBBGGTGGSGBV SSSCGSSGCSSS BBBGGYGSSGCSSS Direction: Forward Position #: 3 Overlap #: 10 Alignment: BBBGGTGGSGBV-- --SSSCGSSGCSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Original Motif Reverse Complement BBBGGYGSSGCSSS SSGGGCGGSGGCGSS BBSGGCGGSGSCGSS Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBBGGYGSSGCSSS- SSGGGCGGSGGCGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 86 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- aaCAAAAACaa aaACAAAACaa Reverse Complement Reverse Complement HTGTTTTTGHH TTGTTTTGTTT TTGTTTTKKTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: HTGTTTTTGHH TTGTTTTGTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Original Motif TTGTTTTKKTT DHATTTTTADD HHRTTTTTRDH Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTGTTTTKKTT DHATTTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Original Motif HDKAAAAAKHH AAAAAAAAAAA AAAAAAAADAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: HDKAAAAAKHH AAAAAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Reverse Complement Reverse Complement TTDTTTTTTTT DHKATGTKTKTGTD THKWTKTTTKTGTD Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTDTTTTTTTT--- DHKATGTKTKTGTD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement THKWTKTTTKTGTD TGTGTGTGTGTG TBTKTGTKTGTGTD Direction: Forward Position #: 1 Overlap #: 12 Alignment: THKWTKTTTKTGTD TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Original Motif TBTKTGTKTGTGTD BBTCTKTKTCHB TBTCTKTKTSTBTD Direction: Forward Position #: 1 Overlap #: 12 Alignment: TBTKTGTKTGTGTD BBTCTKTKTCHB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement TBTCTKTKTSTBTD TGTGTGTGTGTG TGTSTGTGTGTGTD Direction: Forward Position #: 1 Overlap #: 12 Alignment: TBTCTKTKTSTBTD TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Reverse Complement Original Motif HACACACACASACA CAYACACACACACA CACACACACACACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: HACACACACASACA CAYACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Reverse Complement TGTGTGTGTGTGTG BGRRRGRGGRTGRTTYGGGG TGTGKGTGKGKGTGRTTYGGGG Direction: Forward Position #: 3 Overlap #: 12 Alignment: TGTGTGTGTGTGTG-------- --BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Original Motif Original Motif TGTGKGTGKGKGTGRTTYGGGG TKKTTTGTTTTTTT TGTGTKTKTKKDTKKTTTGGGG Direction: Forward Position #: 5 Overlap #: 14 Alignment: TGTGKGTGKGKGTGRTTYGGGG ----TKKTTTGTTTTTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-20-2016 14:49:39 Runtime: 837.987 seconds MOTIFSIM is written by Ngoc Tam L. 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