MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.1

INPUT

Input Parameters
Number of files: 2
Number of top significant motifs: 10
Number of best matches: 10
Similarity cutoff >= 0.75
Matching motif database: UniProbe Mus Musculus
Phylogenetic tree: Yes
Combined similar motifs: Yes
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
W-ChIPMotifs_DM230.txt 11 1
RSAT_peak-motifs_DM230.txt 10 2

RESULTS

Top 10 Significant Motifs - Global Matching (Highest to Lowest)

Dataset #: 1 Motif ID: 1 Motif name: TFW1

Original motif     Consensus sequence: GTCGCG Reverse complement motif     Consensus sequence: CGCGAC

Best Matches for Top Significant Motif ID 1 (Highest to Lowest)

Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0375102

Alignment:
SGGTCACGTGACCS
--GTCGCG------

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0539

Alignment:
HVGCCCCGCCCCBB
--GTCGCG------

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 6
Similarity score: 0.0558733

Alignment:
BCCGCCCCGCCCCBB
-------CGCGAC--

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0980422

Alignment:
GBTGCAGGTGB
GTCGCG-----

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 4
Similarity score: 1.09467

Alignment:
HCAGAATGTHD--
-------GTCGCG

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 1 Motif ID: 3 Motif name: TFW3

Original motif     Consensus sequence: CGGCYBCGCG Reverse complement motif     Consensus sequence: CGCGBMGCCG

Best Matches for Top Significant Motif ID 3 (Highest to Lowest)

Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0718771

Alignment:
HVGCCCCGCCCCBB
CGGCYBCGCG----

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0719604

Alignment:
BCCGCCCCGCCCCBB
-CGGCYBCGCG----

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0895189

Alignment:
SGGTCACGTGACCS
----CGCGBMGCCG

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 1.10343

Alignment:
BCACCTGCABC--
---CGCGBMGCCG

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 2
Motif ID: 15
Motif name: kCAGCCAATmr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 1.57732

Alignment:
---DCAGCCAATVR
CGCGBMGCCG----

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH


Dataset #: 2 Motif ID: 17 Motif name: wwAAATAATAtw

Original motif     Consensus sequence: HDAAATAATADD Reverse complement motif     Consensus sequence: DDTATTATTTDH

Best Matches for Top Significant Motif ID 17 (Highest to Lowest)

Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 12
Similarity score: 0.0565705

Alignment:
ABAAAAAAWHAAAAARAW
------HDAAATAATADD

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0575935

Alignment:
HDWVAAAHAAAAAMAAAMWWWHBWA
--HDAAATAATADD-----------

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0712963

Alignment:
ATKAAWTTTTRMAABAHHTW
--------DDTATTATTTDH

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0733516

Alignment:
TWAAWTTVTGAAAAAHWW
------HDAAATAATADD

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 16
Number of overlap: 5
Similarity score: 3.59569

Alignment:
-------KKKAGGDGGAKKMGBBGKMG
DDTATTATTTDH---------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 2 Motif ID: 13 Motif name: tkAAATAATAtw

Original motif     Consensus sequence: HDAAATAATAHW Reverse complement motif     Consensus sequence: WHTATTATTTDH

Best Matches for Top Significant Motif ID 13 (Highest to Lowest)

Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 12
Number of overlap: 12
Similarity score: 0.0590505

Alignment:
TWVHWWWYTTTYTTTTTHTTTVWBH
-----------WHTATTATTTDH--

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0637702

Alignment:
WTKTTTTTHWTTTTTTBT
WHTATTATTTDH------

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0704475

Alignment:
WAHHTVTTYKAAAAWTTRAT
HDAAATAATAHW--------

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0763819

Alignment:
TWAAWTTVTGAAAAAHWW
------HDAAATAATAHW

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 16
Number of overlap: 5
Similarity score: 3.59273

Alignment:
-------KKKAGGDGGAKKMGBBGKMG
WHTATTATTTDH---------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1 Motif ID: 2 Motif name: TFW2

Original motif     Consensus sequence: SCGCGCGG Reverse complement motif     Consensus sequence: CCGCGCGS

Best Matches for Top Significant Motif ID 2 (Highest to Lowest)

Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0456233

Alignment:
BBGGGGCGGGGCVD
-SCGCGCGG-----

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.045686

Alignment:
BCCGCCCCGCCCCBB
------CCGCGCGS-

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0988223

Alignment:
SGGTCACGTGACCS
---SCGCGCGG---

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 4
Similarity score: 2.08456

Alignment:
----GBTGCAGGTGB
SCGCGCGG-------

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 2
Motif ID: 15
Motif name: kCAGCCAATmr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 4
Similarity score: 2.0901

Alignment:
MBATTGGCTGH----
-------CCGCGCGS

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH


Dataset #: 2 Motif ID: 21 Motif name: wbgTAAATAww

Original motif     Consensus sequence: DBGTAAATAHD Reverse complement motif     Consensus sequence: DHTATTTACBD

Best Matches for Top Significant Motif ID 21 (Highest to Lowest)

Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 15
Number of overlap: 11
Similarity score: 0.0192768

Alignment:
TWVHWWWYTTTYTTTTTHTTTVWBH
--------------DHTATTTACBD

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0283217

Alignment:
WTKTTTTTHWTTTTTTBT
DHTATTTACBD-------

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0308097

Alignment:
WWHTTTTTCABAAWTTWA
------DHTATTTACBD-

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0333874

Alignment:
ATKAAWTTTTRMAABAHHTW
-------DBGTAAATAHD--

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 14
Number of overlap: 7
Similarity score: 2.0544

Alignment:
----KKKAGGDGGAKKMGBBGKMG
DHTATTTACBD-------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 12
Number of overlap: 5
Similarity score: 3.05714

Alignment:
------CHCCBCCKMCTCCKCM
DHTATTTACBD-----------

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 4
Similarity score: 3.54896

Alignment:
-------GCVGCGGCBCCG
DHTATTTACBD--------

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 2 Motif ID: 19 Motif name: wsTACwGTAsw

Original motif     Consensus sequence: HVTACWGTABD Reverse complement motif     Consensus sequence: DBTACWGTAVH

Best Matches for Top Significant Motif ID 19 (Highest to Lowest)

Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0413797

Alignment:
WWHTTTTTCABAAWTTWA
---DBTACWGTAVH----

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0445707

Alignment:
WAHHTVTTYKAAAAWTTRAT
-------HVTACWGTABD--

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0472742

Alignment:
HDWVAAAHAAAAAMAAAMWWWHBWA
---DBTACWGTAVH-----------

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 9
Similarity score: 1.04742

Alignment:
WTKTTTTTHWTTTTTTBT--
---------DBTACWGTAVH

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 15
Number of overlap: 6
Similarity score: 2.54736

Alignment:
-----CYYCBBCYYYTCCHCCTYYY
DBTACWGTAVH--------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 5
Similarity score: 3.04599

Alignment:
GGMGGRGGCGGVGC------
---------DBTACWGTAVH

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 12
Number of overlap: 5
Similarity score: 3.04861

Alignment:
RGRGGAGRRGGHGGDG------
-----------DBTACWGTAVH

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 2 Motif ID: 16 Motif name: kcACCTGCAgc

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB

Best Matches for Top Significant Motif ID 16 (Highest to Lowest)

Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0312321

Alignment:
GGMGGRGGCGGVGC
GBTGCAGGTGB---

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0444938

Alignment:
KKKAGGDGGAKKMGBBGKMG
----GBTGCAGGTGB-----

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.538471

Alignment:
-RGRGGAGRRGGHGGDG
GBTGCAGGTGB------

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 1.54364

Alignment:
GCVGCGGCBCCG---
----BCACCTGCABC

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 1
Motif ID: 3
Motif name: TFW3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 1.5466

Alignment:
---CGGCYBCGCG
GBTGCAGGTGB--

Original motif     Consensus sequence: CGGCYBCGCG Reverse complement motif     Consensus sequence: CGCGBMGCCG


Dataset #: 1
Motif ID: 1
Motif name: TFW1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 2.54121

Alignment:
CGCGAC-----
BCACCTGCABC

Original motif     Consensus sequence: GTCGCG Reverse complement motif     Consensus sequence: CGCGAC


Dataset #: 1
Motif ID: 2
Motif name: TFW2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 4
Similarity score: 3.53211

Alignment:
CCGCGCGS-------
----BCACCTGCABC

Original motif     Consensus sequence: SCGCGCGG Reverse complement motif     Consensus sequence: CCGCGCGS


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 22
Number of overlap: 4
Similarity score: 3.53789

Alignment:
-------TWVHWWWYTTTYTTTTTHTTTVWBH
GBTGCAGGTGB---------------------

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1 Motif ID: 4 Motif name: TFF1

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG

Best Matches for Top Significant Motif ID 4 (Highest to Lowest)

Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0542674

Alignment:
HVGCCCCGCCCCBB
CGGVGCCGCVGC--

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0548371

Alignment:
BCCGCCCCGCCCCBB
---GCVGCGGCBCCG

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0777862

Alignment:
SGGTCACGTGACCS
--GCVGCGGCBCCG

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 2.08028

Alignment:
----GBTGCAGGTGB
CGGVGCCGCVGC---

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 2
Motif ID: 15
Motif name: kCAGCCAATmr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 5
Similarity score: 3.54126

Alignment:
-------DCAGCCAATVR
CGGVGCCGCVGC------

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 4
Similarity score: 4.07107

Alignment:
HCAGAATGTHD--------
-------GCVGCGGCBCCG

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 2
Motif ID: 21
Motif name: wbgTAAATAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 4
Similarity score: 4.0742

Alignment:
DHTATTTACBD--------
-------GCVGCGGCBCCG

Original motif     Consensus sequence: DBGTAAATAHD Reverse complement motif     Consensus sequence: DHTATTTACBD


Dataset #: 2 Motif ID: 20 Motif name: dhACATTCTkh

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD

Best Matches for Top Significant Motif ID 20 (Highest to Lowest)

Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 11
Similarity score: 0.00522383

Alignment:
WWHTTTTTCABAAWTTWA
HCAGAATGTHD-------

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.014258

Alignment:
HDWVAAAHAAAAAMAAAMWWWHBWA
----HCAGAATGTHD----------

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 11
Similarity score: 0.0192045

Alignment:
ATKAAWTTTTRMAABAHHTW
-DHACATTCTGH--------

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 10
Similarity score: 0.519904

Alignment:
ABAAAAAAWHAAAAARAW-
--------HCAGAATGTHD

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 17
Number of overlap: 4
Similarity score: 3.5

Alignment:
-------CYYCBBCYYYTCCHCCTYYY
DHACATTCTGH----------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 4
Similarity score: 3.51958

Alignment:
-------GCVGCGGCBCCG
HCAGAATGTHD--------

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 1
Motif ID: 1
Motif name: TFW1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 4
Similarity score: 3.52299

Alignment:
-------CGCGAC
DHACATTCTGH--

Original motif     Consensus sequence: GTCGCG Reverse complement motif     Consensus sequence: CGCGAC


Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 4
Similarity score: 3.52554

Alignment:
-------GCVCCGCCMCCYCC
DHACATTCTGH----------

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC



Significant Motifs - Global and Local Matching (Highest to Lowest)

Dataset #: 1 Motif ID: 1 Motif name: TFW1

Original motif     Consensus sequence: GTCGCG Reverse complement motif     Consensus sequence: CGCGAC

Best Matches for Significant Motif ID 1 (Highest to Lowest)

Dataset #: 1
Motif ID: 3
Motif name: TFW3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0350356

Alignment:
CGGCYBCGCG
----GTCGCG

Original motif     Consensus sequence: CGGCYBCGCG Reverse complement motif     Consensus sequence: CGCGBMGCCG


Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0375102

Alignment:
SGGTCACGTGACCS
--GTCGCG------

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0381641

Alignment:
GCVCCGCCMCCYCC
----CGCGAC----

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0431161

Alignment:
CGGVGCCGCVGC
------CGCGAC

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 1
Motif ID: 2
Motif name: TFW2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.052047

Alignment:
CCGCGCGS
-CGCGAC-

Original motif     Consensus sequence: SCGCGCGG Reverse complement motif     Consensus sequence: CCGCGCGS


Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0539

Alignment:
HVGCCCCGCCCCBB
--GTCGCG------

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0558733

Alignment:
BCCGCCCCGCCCCBB
-------CGCGAC--

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0877631

Alignment:
CHCCBCCKMCTCCKCM
------CGCGAC----

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.089121

Alignment:
KKKAGGDGGAKKMGBBGKMG
--------GTCGCG------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0980422

Alignment:
BCACCTGCABC
-----CGCGAC

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 4
Similarity score: 1.09467

Alignment:
HCAGAATGTHD--
-------GTCGCG

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 2 Motif ID: 16 Motif name: kcACCTGCAgc

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB

Best Matches for Significant Motif ID 16 (Highest to Lowest)

Dataset #: 2
Motif ID: 19
Motif name: wsTACwGTAsw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0182895

Alignment:
DBTACWGTAVH
BCACCTGCABC

Original motif     Consensus sequence: HVTACWGTABD Reverse complement motif     Consensus sequence: DBTACWGTAVH


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0221745

Alignment:
DHACATTCTGH
BCACCTGCABC

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0280991

Alignment:
SGGTCACGTGACCS
---BCACCTGCABC

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0312321

Alignment:
GGMGGRGGCGGVGC
GBTGCAGGTGB---

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0370129

Alignment:
HVGCCCCGCCCCBB
-BCACCTGCABC--

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 2
Motif ID: 15
Motif name: kCAGCCAATmr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0407197

Alignment:
DCAGCCAATVR
GBTGCAGGTGB

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0429055

Alignment:
BCCGCCCCGCCCCBB
--BCACCTGCABC--

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0444938

Alignment:
KKKAGGDGGAKKMGBBGKMG
----GBTGCAGGTGB-----

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.538471

Alignment:
-RGRGGAGRRGGHGGDG
GBTGCAGGTGB------

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 1.54364

Alignment:
GCVGCGGCBCCG---
----BCACCTGCABC

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 1 Motif ID: 2 Motif name: TFW2

Original motif     Consensus sequence: SCGCGCGG Reverse complement motif     Consensus sequence: CCGCGCGS

Best Matches for Significant Motif ID 2 (Highest to Lowest)

Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0456233

Alignment:
BBGGGGCGGGGCVD
-SCGCGCGG-----

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.045686

Alignment:
BCCGCCCCGCCCCBB
------CCGCGCGS-

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0583967

Alignment:
GCVCCGCCMCCYCC
---CCGCGCGS---

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.060966

Alignment:
CGGVGCCGCVGC
SCGCGCGG----

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 1
Motif ID: 3
Motif name: TFW3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0906073

Alignment:
CGCGBMGCCG
--SCGCGCGG

Original motif     Consensus sequence: CGGCYBCGCG Reverse complement motif     Consensus sequence: CGCGBMGCCG


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0910301

Alignment:
CHCCBCCKMCTCCKCM
---CCGCGCGS-----

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.094473

Alignment:
KKKAGGDGGAKKMGBBGKMG
---------SCGCGCGG---

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0988223

Alignment:
SGGTCACGTGACCS
---SCGCGCGG---

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 1
Motif ID: 1
Motif name: TFW1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 5
Similarity score: 1.5088

Alignment:
GTCGCG---
-SCGCGCGG

Original motif     Consensus sequence: GTCGCG Reverse complement motif     Consensus sequence: CGCGAC


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 4
Similarity score: 2.08456

Alignment:
----GBTGCAGGTGB
SCGCGCGG-------

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 1 Motif ID: 3 Motif name: TFW3

Original motif     Consensus sequence: CGGCYBCGCG Reverse complement motif     Consensus sequence: CGCGBMGCCG

Best Matches for Significant Motif ID 3 (Highest to Lowest)

Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0623879

Alignment:
CGGVGCCGCVGC
CGGCYBCGCG--

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0645308

Alignment:
GGMGGRGGCGGVGC
CGCGBMGCCG----

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0718771

Alignment:
HVGCCCCGCCCCBB
CGGCYBCGCG----

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0719604

Alignment:
BCCGCCCCGCCCCBB
-CGGCYBCGCG----

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0767689

Alignment:
KKKAGGDGGAKKMGBBGKMG
----------CGCGBMGCCG

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.0814831

Alignment:
CHCCBCCKMCTCCKCM
CGGCYBCGCG------

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0895189

Alignment:
SGGTCACGTGACCS
----CGCGBMGCCG

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 1
Motif ID: 2
Motif name: TFW2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 1.09499

Alignment:
--CCGCGCGS
CGGCYBCGCG

Original motif     Consensus sequence: SCGCGCGG Reverse complement motif     Consensus sequence: CCGCGCGS


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 1.10343

Alignment:
BCACCTGCABC--
---CGCGBMGCCG

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 2
Motif ID: 15
Motif name: kCAGCCAATmr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 1.57732

Alignment:
---DCAGCCAATVR
CGCGBMGCCG----

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH


Dataset #: 2 Motif ID: 19 Motif name: wsTACwGTAsw

Original motif     Consensus sequence: HVTACWGTABD Reverse complement motif     Consensus sequence: DBTACWGTAVH

Best Matches for Significant Motif ID 19 (Highest to Lowest)

Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0199592

Alignment:
GBTGCAGGTGB
HVTACWGTABD

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 2
Motif ID: 17
Motif name: wwAAATAATAtw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0309343

Alignment:
DDTATTATTTDH
-HVTACWGTABD

Original motif     Consensus sequence: HDAAATAATADD Reverse complement motif     Consensus sequence: DDTATTATTTDH


Dataset #: 2
Motif ID: 13
Motif name: tkAAATAATAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0337121

Alignment:
HDAAATAATAHW
DBTACWGTAVH-

Original motif     Consensus sequence: HDAAATAATAHW Reverse complement motif     Consensus sequence: WHTATTATTTDH


Dataset #: 2
Motif ID: 21
Motif name: wbgTAAATAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.037518

Alignment:
DBGTAAATAHD
DBTACWGTAVH

Original motif     Consensus sequence: DBGTAAATAHD Reverse complement motif     Consensus sequence: DHTATTTACBD


Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0413797

Alignment:
WWHTTTTTCABAAWTTWA
---DBTACWGTAVH----

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0445707

Alignment:
WAHHTVTTYKAAAAWTTRAT
-------HVTACWGTABD--

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0472742

Alignment:
HDWVAAAHAAAAAMAAAMWWWHBWA
---DBTACWGTAVH-----------

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.544444

Alignment:
HCAGAATGTHD-
-HVTACWGTABD

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 9
Similarity score: 1.04742

Alignment:
WTKTTTTTHWTTTTTTBT--
---------DBTACWGTAVH

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 15
Number of overlap: 6
Similarity score: 2.54736

Alignment:
-----CYYCBBCYYYTCCHCCTYYY
DBTACWGTAVH--------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 2 Motif ID: 20 Motif name: dhACATTCTkh

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD

Best Matches for Significant Motif ID 20 (Highest to Lowest)

Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 11
Similarity score: 0.00522383

Alignment:
WWHTTTTTCABAAWTTWA
HCAGAATGTHD-------

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.00731643

Alignment:
BCACCTGCABC
DHACATTCTGH

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 2
Motif ID: 17
Motif name: wwAAATAATAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0127231

Alignment:
DDTATTATTTDH
-HCAGAATGTHD

Original motif     Consensus sequence: HDAAATAATADD Reverse complement motif     Consensus sequence: DDTATTATTTDH


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 11
Similarity score: 0.014258

Alignment:
HDWVAAAHAAAAAMAAAMWWWHBWA
----HCAGAATGTHD----------

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 11
Similarity score: 0.0192045

Alignment:
ATKAAWTTTTRMAABAHHTW
-DHACATTCTGH--------

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 2
Motif ID: 13
Motif name: tkAAATAATAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0199621

Alignment:
WHTATTATTTDH
-HCAGAATGTHD

Original motif     Consensus sequence: HDAAATAATAHW Reverse complement motif     Consensus sequence: WHTATTATTTDH


Dataset #: 2
Motif ID: 15
Motif name: kCAGCCAATmr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0247304

Alignment:
MBATTGGCTGH
DHACATTCTGH

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 10
Similarity score: 0.519904

Alignment:
ABAAAAAAWHAAAAARAW-
--------HCAGAATGTHD

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 2
Motif ID: 19
Motif name: wsTACwGTAsw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.527917

Alignment:
-DBTACWGTAVH
DHACATTCTGH-

Original motif     Consensus sequence: HVTACWGTABD Reverse complement motif     Consensus sequence: DBTACWGTAVH


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 17
Number of overlap: 4
Similarity score: 3.5

Alignment:
-------CYYCBBCYYYTCCHCCTYYY
DHACATTCTGH----------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 2 Motif ID: 21 Motif name: wbgTAAATAww

Original motif     Consensus sequence: DBGTAAATAHD Reverse complement motif     Consensus sequence: DHTATTTACBD

Best Matches for Significant Motif ID 21 (Highest to Lowest)

Dataset #: 2
Motif ID: 13
Motif name: tkAAATAATAtw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0162338

Alignment:
HDAAATAATAHW
-DBGTAAATAHD

Original motif     Consensus sequence: HDAAATAATAHW Reverse complement motif     Consensus sequence: WHTATTATTTDH


Dataset #: 2
Motif ID: 17
Motif name: wwAAATAATAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0164863

Alignment:
DDTATTATTTDH
DHTATTTACBD-

Original motif     Consensus sequence: HDAAATAATADD Reverse complement motif     Consensus sequence: DDTATTATTTDH


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 15
Number of overlap: 11
Similarity score: 0.0192768

Alignment:
TWVHWWWYTTTYTTTTTHTTTVWBH
--------------DHTATTTACBD

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0283217

Alignment:
WTKTTTTTHWTTTTTTBT
DHTATTTACBD-------

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0308097

Alignment:
WWHTTTTTCABAAWTTWA
------DHTATTTACBD-

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0333874

Alignment:
ATKAAWTTTTRMAABAHHTW
-------DBGTAAATAHD--

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 2
Motif ID: 19
Motif name: wsTACwGTAsw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0472403

Alignment:
HVTACWGTABD
DHTATTTACBD

Original motif     Consensus sequence: HVTACWGTABD Reverse complement motif     Consensus sequence: DBTACWGTAVH


Dataset #: 2
Motif ID: 15
Motif name: kCAGCCAATmr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.554132

Alignment:
-MBATTGGCTGH
DHTATTTACBD-

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 14
Number of overlap: 7
Similarity score: 2.0544

Alignment:
----KKKAGGDGGAKKMGBBGKMG
DHTATTTACBD-------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 12
Number of overlap: 5
Similarity score: 3.05714

Alignment:
------CHCCBCCKMCTCCKCM
DHTATTTACBD-----------

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 2 Motif ID: 17 Motif name: wwAAATAATAtw

Original motif     Consensus sequence: HDAAATAATADD Reverse complement motif     Consensus sequence: DDTATTATTTDH

Best Matches for Significant Motif ID 17 (Highest to Lowest)

Dataset #: 2
Motif ID: 13
Motif name: tkAAATAATAtw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0

Alignment:
HDAAATAATAHW
HDAAATAATADD

Original motif     Consensus sequence: HDAAATAATAHW Reverse complement motif     Consensus sequence: WHTATTATTTDH


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 12
Similarity score: 0.0565705

Alignment:
ABAAAAAAWHAAAAARAW
------HDAAATAATADD

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0575935

Alignment:
HDWVAAAHAAAAAMAAAMWWWHBWA
--HDAAATAATADD-----------

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0712963

Alignment:
ATKAAWTTTTRMAABAHHTW
--------DDTATTATTTDH

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0733516

Alignment:
TWAAWTTVTGAAAAAHWW
------HDAAATAATADD

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 2
Motif ID: 21
Motif name: wbgTAAATAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.560545

Alignment:
DHTATTTACBD-
DDTATTATTTDH

Original motif     Consensus sequence: DBGTAAATAHD Reverse complement motif     Consensus sequence: DHTATTTACBD


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.583032

Alignment:
-HCAGAATGTHD
DDTATTATTTDH

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 2
Motif ID: 19
Motif name: wsTACwGTAsw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.584715

Alignment:
-DBTACWGTAVH
HDAAATAATADD

Original motif     Consensus sequence: HVTACWGTABD Reverse complement motif     Consensus sequence: DBTACWGTAVH


Dataset #: 2
Motif ID: 15
Motif name: kCAGCCAATmr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.59598

Alignment:
-MBATTGGCTGH
DDTATTATTTDH

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 16
Number of overlap: 5
Similarity score: 3.59569

Alignment:
-------KKKAGGDGGAKKMGBBGKMG
DDTATTATTTDH---------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 2 Motif ID: 13 Motif name: tkAAATAATAtw

Original motif     Consensus sequence: HDAAATAATAHW Reverse complement motif     Consensus sequence: WHTATTATTTDH

Best Matches for Significant Motif ID 13 (Highest to Lowest)

Dataset #: 2
Motif ID: 17
Motif name: wwAAATAATAtw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0

Alignment:
HDAAATAATADD
HDAAATAATAHW

Original motif     Consensus sequence: HDAAATAATADD Reverse complement motif     Consensus sequence: DDTATTATTTDH


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0590505

Alignment:
TWVHWWWYTTTYTTTTTHTTTVWBH
-----------WHTATTATTTDH--

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0637702

Alignment:
WTKTTTTTHWTTTTTTBT
WHTATTATTTDH------

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0704475

Alignment:
WAHHTVTTYKAAAAWTTRAT
HDAAATAATAHW--------

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0763819

Alignment:
TWAAWTTVTGAAAAAHWW
------HDAAATAATAHW

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 2
Motif ID: 21
Motif name: wbgTAAATAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.560292

Alignment:
-DBGTAAATAHD
HDAAATAATAHW

Original motif     Consensus sequence: DBGTAAATAHD Reverse complement motif     Consensus sequence: DHTATTTACBD


Dataset #: 2
Motif ID: 19
Motif name: wsTACwGTAsw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.587493

Alignment:
-DBTACWGTAVH
HDAAATAATAHW

Original motif     Consensus sequence: HVTACWGTABD Reverse complement motif     Consensus sequence: DBTACWGTAVH


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.590271

Alignment:
-HCAGAATGTHD
WHTATTATTTDH

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 2
Motif ID: 15
Motif name: kCAGCCAATmr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.592142

Alignment:
-MBATTGGCTGH
WHTATTATTTDH

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 16
Number of overlap: 5
Similarity score: 3.59273

Alignment:
-------KKKAGGDGGAKKMGBBGKMG
WHTATTATTTDH---------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 2 Motif ID: 15 Motif name: kCAGCCAATmr

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH

Best Matches for Significant Motif ID 15 (Highest to Lowest)

Dataset #: 2
Motif ID: 13
Motif name: tkAAATAATAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0320614

Alignment:
WHTATTATTTDH
-MBATTGGCTGH

Original motif     Consensus sequence: HDAAATAATAHW Reverse complement motif     Consensus sequence: WHTATTATTTDH


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.034958

Alignment:
HCAGAATGTHD
DCAGCCAATVR

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 2
Motif ID: 17
Motif name: wwAAATAATAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0358988

Alignment:
DDTATTATTTDH
-MBATTGGCTGH

Original motif     Consensus sequence: HDAAATAATADD Reverse complement motif     Consensus sequence: DDTATTATTTDH


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0360892

Alignment:
BCACCTGCABC
MBATTGGCTGH

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0376063

Alignment:
GGMGGRGGCGGVGC
--MBATTGGCTGH-

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 11
Similarity score: 0.0396371

Alignment:
HDWVAAAHAAAAAMAAAMWWWHBWA
--------DCAGCCAATVR------

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 2
Motif ID: 21
Motif name: wbgTAAATAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.538109

Alignment:
DHTATTTACBD-
-MBATTGGCTGH

Original motif     Consensus sequence: DBGTAAATAHD Reverse complement motif     Consensus sequence: DHTATTTACBD


Dataset #: 1
Motif ID: 3
Motif name: TFW3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 2.01586

Alignment:
CGGCYBCGCG----
---MBATTGGCTGH

Original motif     Consensus sequence: CGGCYBCGCG Reverse complement motif     Consensus sequence: CGCGBMGCCG


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 11
Number of overlap: 6
Similarity score: 2.5389

Alignment:
RGRGGAGRRGGHGGDG-----
----------MBATTGGCTGH

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 5
Similarity score: 3

Alignment:
CGGVGCCGCVGC------
-------DCAGCCAATVR

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG



Best Matches for Each Motif (Highest to Lowest)

Dataset #: 1 Motif ID: 1 Motif name: TFW1

Original motif     Consensus sequence: GTCGCG Reverse complement motif     Consensus sequence: CGCGAC

Best Matches for Motif ID 1 (Highest to Lowest)

Dataset #: 1
Motif ID: 3
Motif name: TFW3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0350356

Alignment:
CGGCYBCGCG
----GTCGCG

Original motif     Consensus sequence: CGGCYBCGCG Reverse complement motif     Consensus sequence: CGCGBMGCCG


Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0375102

Alignment:
SGGTCACGTGACCS
--GTCGCG------

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0381641

Alignment:
GCVCCGCCMCCYCC
----CGCGAC----

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0431161

Alignment:
CGGVGCCGCVGC
------CGCGAC

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 1
Motif ID: 2
Motif name: TFW2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.052047

Alignment:
CCGCGCGS
-CGCGAC-

Original motif     Consensus sequence: SCGCGCGG Reverse complement motif     Consensus sequence: CCGCGCGS


Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0539

Alignment:
HVGCCCCGCCCCBB
--GTCGCG------

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0558733

Alignment:
BCCGCCCCGCCCCBB
-------CGCGAC--

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0877631

Alignment:
CHCCBCCKMCTCCKCM
------CGCGAC----

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.089121

Alignment:
KKKAGGDGGAKKMGBBGKMG
--------GTCGCG------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0980422

Alignment:
BCACCTGCABC
-----CGCGAC

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 4
Similarity score: 1.09467

Alignment:
HCAGAATGTHD--
-------GTCGCG

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 1 Motif ID: 2 Motif name: TFW2

Original motif     Consensus sequence: SCGCGCGG Reverse complement motif     Consensus sequence: CCGCGCGS

Best Matches for Motif ID 2 (Highest to Lowest)

Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0456233

Alignment:
BBGGGGCGGGGCVD
-SCGCGCGG-----

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.045686

Alignment:
BCCGCCCCGCCCCBB
------CCGCGCGS-

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0583967

Alignment:
GCVCCGCCMCCYCC
---CCGCGCGS---

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.060966

Alignment:
CGGVGCCGCVGC
SCGCGCGG----

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 1
Motif ID: 3
Motif name: TFW3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0906073

Alignment:
CGCGBMGCCG
--SCGCGCGG

Original motif     Consensus sequence: CGGCYBCGCG Reverse complement motif     Consensus sequence: CGCGBMGCCG


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0910301

Alignment:
CHCCBCCKMCTCCKCM
---CCGCGCGS-----

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.094473

Alignment:
KKKAGGDGGAKKMGBBGKMG
---------SCGCGCGG---

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0988223

Alignment:
SGGTCACGTGACCS
---SCGCGCGG---

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 1
Motif ID: 1
Motif name: TFW1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 5
Similarity score: 1.5088

Alignment:
GTCGCG---
-SCGCGCGG

Original motif     Consensus sequence: GTCGCG Reverse complement motif     Consensus sequence: CGCGAC


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 4
Similarity score: 2.08456

Alignment:
----GBTGCAGGTGB
SCGCGCGG-------

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 1 Motif ID: 3 Motif name: TFW3

Original motif     Consensus sequence: CGGCYBCGCG Reverse complement motif     Consensus sequence: CGCGBMGCCG

Best Matches for Motif ID 3 (Highest to Lowest)

Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0623879

Alignment:
CGGVGCCGCVGC
CGGCYBCGCG--

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0645308

Alignment:
GGMGGRGGCGGVGC
CGCGBMGCCG----

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0718771

Alignment:
HVGCCCCGCCCCBB
CGGCYBCGCG----

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0719604

Alignment:
BCCGCCCCGCCCCBB
-CGGCYBCGCG----

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0767689

Alignment:
KKKAGGDGGAKKMGBBGKMG
----------CGCGBMGCCG

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.0814831

Alignment:
CHCCBCCKMCTCCKCM
CGGCYBCGCG------

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0895189

Alignment:
SGGTCACGTGACCS
----CGCGBMGCCG

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 1
Motif ID: 2
Motif name: TFW2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 1.09499

Alignment:
--CCGCGCGS
CGGCYBCGCG

Original motif     Consensus sequence: SCGCGCGG Reverse complement motif     Consensus sequence: CCGCGCGS


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 1.10343

Alignment:
BCACCTGCABC--
---CGCGBMGCCG

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 2
Motif ID: 15
Motif name: kCAGCCAATmr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 1.57732

Alignment:
---DCAGCCAATVR
CGCGBMGCCG----

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH


Dataset #: 1 Motif ID: 4 Motif name: TFF1

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG

Best Matches for Motif ID 4 (Highest to Lowest)

Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0292081

Alignment:
GGMGGRGGCGGVGC
--CGGVGCCGCVGC

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0542674

Alignment:
HVGCCCCGCCCCBB
CGGVGCCGCVGC--

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 12
Similarity score: 0.0543272

Alignment:
KKKAGGDGGAKKMGBBGKMG
------CGGVGCCGCVGC--

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0548371

Alignment:
BCCGCCCCGCCCCBB
---GCVGCGGCBCCG

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0594165

Alignment:
CHCCBCCKMCTCCKCM
--GCVGCGGCBCCG--

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0777862

Alignment:
SGGTCACGTGACCS
--GCVGCGGCBCCG

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 1
Motif ID: 3
Motif name: TFW3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 1.04219

Alignment:
CGGCYBCGCG--
CGGVGCCGCVGC

Original motif     Consensus sequence: CGGCYBCGCG Reverse complement motif     Consensus sequence: CGCGBMGCCG


Dataset #: 1
Motif ID: 2
Motif name: TFW2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 2.04515

Alignment:
SCGCGCGG----
CGGVGCCGCVGC

Original motif     Consensus sequence: SCGCGCGG Reverse complement motif     Consensus sequence: CCGCGCGS


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 2.08028

Alignment:
----GBTGCAGGTGB
CGGVGCCGCVGC---

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 1
Motif ID: 1
Motif name: TFW1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 3.02292

Alignment:
------GTCGCG
GCVGCGGCBCCG

Original motif     Consensus sequence: GTCGCG Reverse complement motif     Consensus sequence: CGCGAC


Dataset #: 1 Motif ID: 5 Motif name: TFF11

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC

Best Matches for Motif ID 5 (Highest to Lowest)

Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.033716

Alignment:
RGRGGAGRRGGHGGDG
GGMGGRGGCGGVGC--

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 14
Similarity score: 0.0386905

Alignment:
CYYCBBCYYYTCCHCCTYYY
-----GCVCCGCCMCCYCC-

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0548198

Alignment:
BCCGCCCCGCCCCBB
GCVCCGCCMCCYCC-

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0652173

Alignment:
HVGCCCCGCCCCBB
GCVCCGCCMCCYCC

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 1.02659

Alignment:
--CGGVGCCGCVGC
GGMGGRGGCGGVGC

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 1.07325

Alignment:
SGGTCACGTGACCS--
--GCVCCGCCMCCYCC

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 1.56524

Alignment:
BCACCTGCABC---
GCVCCGCCMCCYCC

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 1
Motif ID: 3
Motif name: TFW3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 2.04171

Alignment:
CGGCYBCGCG----
GCVCCGCCMCCYCC

Original motif     Consensus sequence: CGGCYBCGCG Reverse complement motif     Consensus sequence: CGCGBMGCCG


Dataset #: 1
Motif ID: 2
Motif name: TFW2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 3.06679

Alignment:
------CCGCGCGS
GCVCCGCCMCCYCC

Original motif     Consensus sequence: SCGCGCGG Reverse complement motif     Consensus sequence: CCGCGCGS


Dataset #: 1
Motif ID: 1
Motif name: TFW1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 4.05705

Alignment:
CGCGAC--------
GGMGGRGGCGGVGC

Original motif     Consensus sequence: GTCGCG Reverse complement motif     Consensus sequence: CGCGAC


Dataset #: 1 Motif ID: 6 Motif name: TFM2

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM

Best Matches for Motif ID 6 (Highest to Lowest)

Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0331473

Alignment:
CYYCBBCYYYTCCHCCTYYY
CHCCBCCKMCTCCKCM----

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 16
Similarity score: 0.0794752

Alignment:
HDWVAAAHAAAAAMAAAMWWWHBWA
-------RGRGGAGRRGGHGGDG--

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.558405

Alignment:
BBGGGGCGGGGCGGB-
RGRGGAGRRGGHGGDG

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 1.03372

Alignment:
GGMGGRGGCGGVGC--
RGRGGAGRRGGHGGDG

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 1.05955

Alignment:
BBGGGGCGGGGCVD--
RGRGGAGRRGGHGGDG

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 2.07381

Alignment:
GCVGCGGCBCCG----
RGRGGAGRRGGHGGDG

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 1
Motif ID: 3
Motif name: TFW3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 3.05867

Alignment:
CGCGBMGCCG------
RGRGGAGRRGGHGGDG

Original motif     Consensus sequence: CGGCYBCGCG Reverse complement motif     Consensus sequence: CGCGBMGCCG


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 3.07248

Alignment:
BCACCTGCABC------
-CHCCBCCKMCTCCKCM

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 9
Similarity score: 3.57029

Alignment:
ABAAAAAAWHAAAAARAW-------
---------RGRGGAGRRGGHGGDG

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 9
Similarity score: 3.57686

Alignment:
TWAAWTTVTGAAAAAHWW-------
---------RGRGGAGRRGGHGGDG

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 1 Motif ID: 7 Motif name: TFM1

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW

Best Matches for Motif ID 7 (Highest to Lowest)

Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 18
Similarity score: 0

Alignment:
HDWVAAAHAAAAAMAAAMWWWHBWA
--ABAAAAAAWHAAAAARAW-----

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0364672

Alignment:
ATKAAWTTTTRMAABAHHTW
ABAAAAAAWHAAAAARAW--

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0456974

Alignment:
WWHTTTTTCABAAWTTWA
WTKTTTTTHWTTTTTTBT

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 17
Similarity score: 0.572783

Alignment:
CYYCBBCYYYTCCHCCTYYY-
---WTKTTTTTHWTTTTTTBT

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 2
Motif ID: 17
Motif name: wwAAATAATAtw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 3.0279

Alignment:
------DDTATTATTTDH
WTKTTTTTHWTTTTTTBT

Original motif     Consensus sequence: HDAAATAATADD Reverse complement motif     Consensus sequence: DDTATTATTTDH


Dataset #: 2
Motif ID: 13
Motif name: tkAAATAATAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 3.0351

Alignment:
HDAAATAATAHW------
ABAAAAAAWHAAAAARAW

Original motif     Consensus sequence: HDAAATAATAHW Reverse complement motif     Consensus sequence: WHTATTATTTDH


Dataset #: 2
Motif ID: 21
Motif name: wbgTAAATAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 3.54371

Alignment:
DBGTAAATAHD-------
ABAAAAAAWHAAAAARAW

Original motif     Consensus sequence: DBGTAAATAHD Reverse complement motif     Consensus sequence: DHTATTTACBD


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 4.06154

Alignment:
--------HCAGAATGTHD
ABAAAAAAWHAAAAARAW-

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 9
Similarity score: 4.56306

Alignment:
---------CHCCBCCKMCTCCKCM
WTKTTTTTHWTTTTTTBT-------

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 2
Motif ID: 19
Motif name: wsTACwGTAsw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 9
Similarity score: 4.57253

Alignment:
---------HVTACWGTABD
ABAAAAAAWHAAAAARAW--

Original motif     Consensus sequence: HVTACWGTABD Reverse complement motif     Consensus sequence: DBTACWGTAVH


Dataset #: 1 Motif ID: 8 Motif name: TFM3

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW

Best Matches for Motif ID 8 (Highest to Lowest)

Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 18
Similarity score: 0.00833981

Alignment:
ATKAAWTTTTRMAABAHHTW
-TWAAWTTVTGAAAAAHWW-

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 18
Similarity score: 0.0346965

Alignment:
TWVHWWWYTTTYTTTTTHTTTVWBH
----WWHTTTTTCABAAWTTWA---

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0376845

Alignment:
WTKTTTTTHWTTTTTTBT
WWHTTTTTCABAAWTTWA

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 2
Motif ID: 17
Motif name: wwAAATAATAtw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 3.03666

Alignment:
------DDTATTATTTDH
WWHTTTTTCABAAWTTWA

Original motif     Consensus sequence: HDAAATAATADD Reverse complement motif     Consensus sequence: DDTATTATTTDH


Dataset #: 2
Motif ID: 13
Motif name: tkAAATAATAtw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 3.0397

Alignment:
------WHTATTATTTDH
WWHTTTTTCABAAWTTWA

Original motif     Consensus sequence: HDAAATAATAHW Reverse complement motif     Consensus sequence: WHTATTATTTDH


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 3.53885

Alignment:
DHACATTCTGH-------
TWAAWTTVTGAAAAAHWW

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 2
Motif ID: 21
Motif name: wbgTAAATAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 3.54165

Alignment:
-------DBGTAAATAHD
WWHTTTTTCABAAWTTWA

Original motif     Consensus sequence: DBGTAAATAHD Reverse complement motif     Consensus sequence: DHTATTTACBD


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 9
Similarity score: 4.56162

Alignment:
---------CHCCBCCKMCTCCKCM
WWHTTTTTCABAAWTTWA-------

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 2
Motif ID: 19
Motif name: wsTACwGTAsw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 5.56444

Alignment:
-----------HVTACWGTABD
TWAAWTTVTGAAAAAHWW----

Original motif     Consensus sequence: HVTACWGTABD Reverse complement motif     Consensus sequence: DBTACWGTAVH


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 17
Number of overlap: 4
Similarity score: 7.05747

Alignment:
CYYCBBCYYYTCCHCCTYYY--------------
----------------WWHTTTTTCABAAWTTWA

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1 Motif ID: 9 Motif name: TFM12

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG

Best Matches for Motif ID 9 (Highest to Lowest)

Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 20
Similarity score: 0.0550447

Alignment:
TWVHWWWYTTTYTTTTTHTTTVWBH
CYYCBBCYYYTCCHCCTYYY-----

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 17
Similarity score: 1.56027

Alignment:
---WTKTTTTTHWTTTTTTBT
CYYCBBCYYYTCCHCCTYYY-

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 2.0134

Alignment:
RGRGGAGRRGGHGGDG----
KKKAGGDGGAKKMGBBGKMG

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 2.54994

Alignment:
-----BCCGCCCCGCCCCBB
CYYCBBCYYYTCCHCCTYYY

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 3.04796

Alignment:
------BBGGGGCGGGGCVD
KKKAGGDGGAKKMGBBGKMG

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 3.05193

Alignment:
GGMGGRGGCGGVGC------
KKKAGGDGGAKKMGBBGKMG

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 4.05708

Alignment:
--------GCVGCGGCBCCG
KKKAGGDGGAKKMGBBGKMG

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 1
Motif ID: 3
Motif name: TFW3
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 5.03421

Alignment:
----------CGCGBMGCCG
KKKAGGDGGAKKMGBBGKMG

Original motif     Consensus sequence: CGGCYBCGCG Reverse complement motif     Consensus sequence: CGCGBMGCCG


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 10
Similarity score: 5.05237

Alignment:
----------WAHHTVTTYKAAAAWTTRAT
CYYCBBCYYYTCCHCCTYYY----------

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 2
Motif name: TFW2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 6.06074

Alignment:
CCGCGCGS------------
CYYCBBCYYYTCCHCCTYYY

Original motif     Consensus sequence: SCGCGCGG Reverse complement motif     Consensus sequence: CCGCGCGS


Dataset #: 1 Motif ID: 10 Motif name: TFM13

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT

Best Matches for Motif ID 10 (Highest to Lowest)

Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 20
Similarity score: 0.0352451

Alignment:
TWVHWWWYTTTYTTTTTHTTTVWBH
----WAHHTVTTYKAAAAWTTRAT-

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 1.02254

Alignment:
TWAAWTTVTGAAAAAHWW--
ATKAAWTTTTRMAABAHHTW

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 1.02868

Alignment:
WTKTTTTTHWTTTTTTBT--
WAHHTVTTYKAAAAWTTRAT

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 2
Motif ID: 13
Motif name: tkAAATAATAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 4.03399

Alignment:
--------HDAAATAATAHW
WAHHTVTTYKAAAAWTTRAT

Original motif     Consensus sequence: HDAAATAATAHW Reverse complement motif     Consensus sequence: WHTATTATTTDH


Dataset #: 2
Motif ID: 17
Motif name: wwAAATAATAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 4.03484

Alignment:
--------HDAAATAATADD
WAHHTVTTYKAAAAWTTRAT

Original motif     Consensus sequence: HDAAATAATADD Reverse complement motif     Consensus sequence: DDTATTATTTDH


Dataset #: 2
Motif ID: 21
Motif name: wbgTAAATAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 4.55116

Alignment:
DBGTAAATAHD---------
ATKAAWTTTTRMAABAHHTW

Original motif     Consensus sequence: DBGTAAATAHD Reverse complement motif     Consensus sequence: DHTATTTACBD


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 11
Number of overlap: 10
Similarity score: 5.0571

Alignment:
KKKAGGDGGAKKMGBBGKMG----------
----------ATKAAWTTTTRMAABAHHTW

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 6.55998

Alignment:
-------------DHACATTCTGH
ATKAAWTTTTRMAABAHHTW----

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 2
Motif ID: 15
Motif name: kCAGCCAATmr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 5
Similarity score: 7.55485

Alignment:
---------------MBATTGGCTGH
ATKAAWTTTTRMAABAHHTW------

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH


Dataset #: 2
Motif ID: 19
Motif name: wsTACwGTAsw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 4
Similarity score: 8.01732

Alignment:
----------------HVTACWGTABD
ATKAAWTTTTRMAABAHHTW-------

Original motif     Consensus sequence: HVTACWGTABD Reverse complement motif     Consensus sequence: DBTACWGTAVH


Dataset #: 1 Motif ID: 11 Motif name: TFM11

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH

Best Matches for Motif ID 11 (Highest to Lowest)

Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 20
Similarity score: 0.0486765

Alignment:
WAHHTVTTYKAAAAWTTRAT-----
TWVHWWWYTTTYTTTTTHTTTVWBH

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 20
Similarity score: 0.0693284

Alignment:
KKKAGGDGGAKKMGBBGKMG-----
HDWVAAAHAAAAAMAAAMWWWHBWA

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 1.0232

Alignment:
-------ABAAAAAAWHAAAAARAW
HDWVAAAHAAAAAMAAAMWWWHBWA

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 1.05388

Alignment:
WWHTTTTTCABAAWTTWA-------
TWVHWWWYTTTYTTTTTHTTTVWBH

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 2
Motif ID: 17
Motif name: wwAAATAATAtw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 4.03464

Alignment:
HDAAATAATADD-------------
HDWVAAAHAAAAAMAAAMWWWHBWA

Original motif     Consensus sequence: HDAAATAATADD Reverse complement motif     Consensus sequence: DDTATTATTTDH


Dataset #: 2
Motif ID: 13
Motif name: tkAAATAATAtw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 4.04436

Alignment:
HDAAATAATAHW-------------
HDWVAAAHAAAAAMAAAMWWWHBWA

Original motif     Consensus sequence: HDAAATAATAHW Reverse complement motif     Consensus sequence: WHTATTATTTDH


Dataset #: 2
Motif ID: 21
Motif name: wbgTAAATAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 4.53643

Alignment:
--------------DHTATTTACBD
TWVHWWWYTTTYTTTTTHTTTVWBH

Original motif     Consensus sequence: DBGTAAATAHD Reverse complement motif     Consensus sequence: DHTATTTACBD


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 4.56457

Alignment:
--------------DHACATTCTGH
TWVHWWWYTTTYTTTTTHTTTVWBH

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 7
Similarity score: 6.57279

Alignment:
------------------RGRGGAGRRGGHGGDG
HDWVAAAHAAAAAMAAAMWWWHBWA---------

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 2
Motif ID: 19
Motif name: wsTACwGTAsw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 4
Similarity score: 8.03096

Alignment:
DBTACWGTAVH---------------------
-------TWVHWWWYTTTYTTTTTHTTTVWBH

Original motif     Consensus sequence: HVTACWGTABD Reverse complement motif     Consensus sequence: DBTACWGTAVH


Dataset #: 2 Motif ID: 12 Motif name: csGCCCCGCCCCsc

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD

Best Matches for Motif ID 12 (Highest to Lowest)

Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0

Alignment:
BCCGCCCCGCCCCBB
-HVGCCCCGCCCCBB

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0777991

Alignment:
CYYCBBCYYYTCCHCCTYYY
---HVGCCCCGCCCCBB---

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0880609

Alignment:
CHCCBCCKMCTCCKCM
HVGCCCCGCCCCBB--

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0937271

Alignment:
GGMGGRGGCGGVGC
BBGGGGCGGGGCVD

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0971132

Alignment:
SGGTCACGTGACCS
HVGCCCCGCCCCBB

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 1.08016

Alignment:
CGGVGCCGCVGC--
HVGCCCCGCCCCBB

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 1
Motif ID: 3
Motif name: TFW3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 2.07757

Alignment:
CGGCYBCGCG----
HVGCCCCGCCCCBB

Original motif     Consensus sequence: CGGCYBCGCG Reverse complement motif     Consensus sequence: CGCGBMGCCG


Dataset #: 1
Motif ID: 2
Motif name: TFW2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 3.07109

Alignment:
------CCGCGCGS
BBGGGGCGGGGCVD

Original motif     Consensus sequence: SCGCGCGG Reverse complement motif     Consensus sequence: CCGCGCGS


Dataset #: 1
Motif ID: 1
Motif name: TFW1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 4.10276

Alignment:
CGCGAC--------
HVGCCCCGCCCCBB

Original motif     Consensus sequence: GTCGCG Reverse complement motif     Consensus sequence: CGCGAC


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 22
Number of overlap: 4
Similarity score: 5.10677

Alignment:
TWVHWWWYTTTYTTTTTHTTTVWBH----------
---------------------HVGCCCCGCCCCBB

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 2 Motif ID: 13 Motif name: tkAAATAATAtw

Original motif     Consensus sequence: HDAAATAATAHW Reverse complement motif     Consensus sequence: WHTATTATTTDH

Best Matches for Motif ID 13 (Highest to Lowest)

Dataset #: 2
Motif ID: 17
Motif name: wwAAATAATAtw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0

Alignment:
HDAAATAATADD
HDAAATAATAHW

Original motif     Consensus sequence: HDAAATAATADD Reverse complement motif     Consensus sequence: DDTATTATTTDH


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0590505

Alignment:
TWVHWWWYTTTYTTTTTHTTTVWBH
-----------WHTATTATTTDH--

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0637702

Alignment:
WTKTTTTTHWTTTTTTBT
WHTATTATTTDH------

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0704475

Alignment:
WAHHTVTTYKAAAAWTTRAT
HDAAATAATAHW--------

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0763819

Alignment:
TWAAWTTVTGAAAAAHWW
------HDAAATAATAHW

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 2
Motif ID: 21
Motif name: wbgTAAATAww
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.560292

Alignment:
-DBGTAAATAHD
HDAAATAATAHW

Original motif     Consensus sequence: DBGTAAATAHD Reverse complement motif     Consensus sequence: DHTATTTACBD


Dataset #: 2
Motif ID: 19
Motif name: wsTACwGTAsw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.587493

Alignment:
-DBTACWGTAVH
HDAAATAATAHW

Original motif     Consensus sequence: HVTACWGTABD Reverse complement motif     Consensus sequence: DBTACWGTAVH


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.590271

Alignment:
-HCAGAATGTHD
WHTATTATTTDH

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 2
Motif ID: 15
Motif name: kCAGCCAATmr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.592142

Alignment:
-MBATTGGCTGH
WHTATTATTTDH

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 16
Number of overlap: 5
Similarity score: 3.59273

Alignment:
-------KKKAGGDGGAKKMGBBGKMG
WHTATTATTTDH---------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 2 Motif ID: 14 Motif name: cccGCCCCGCCCCsb

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB

Best Matches for Motif ID 14 (Highest to Lowest)

Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 15
Similarity score: 0.0773345

Alignment:
CYYCBBCYYYTCCHCCTYYY
--BCCGCCCCGCCCCBB---

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0869149

Alignment:
CHCCBCCKMCTCCKCM
BCCGCCCCGCCCCBB-

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.5

Alignment:
-HVGCCCCGCCCCBB
BCCGCCCCGCCCCBB

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.58333

Alignment:
GGMGGRGGCGGVGC-
BBGGGGCGGGGCGGB

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.601399

Alignment:
SGGTCACGTGACCS-
BBGGGGCGGGGCGGB

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 1.58073

Alignment:
---CGGVGCCGCVGC
BBGGGGCGGGGCGGB

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 1
Motif ID: 3
Motif name: TFW3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 2.6085

Alignment:
-----CGGCYBCGCG
BBGGGGCGGGGCGGB

Original motif     Consensus sequence: CGGCYBCGCG Reverse complement motif     Consensus sequence: CGCGBMGCCG


Dataset #: 1
Motif ID: 2
Motif name: TFW2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 3.595

Alignment:
-------SCGCGCGG
BBGGGGCGGGGCGGB

Original motif     Consensus sequence: SCGCGCGG Reverse complement motif     Consensus sequence: CCGCGCGS


Dataset #: 1
Motif ID: 1
Motif name: TFW1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 4.58105

Alignment:
GTCGCG---------
BCCGCCCCGCCCCBB

Original motif     Consensus sequence: GTCGCG Reverse complement motif     Consensus sequence: CGCGAC


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 22
Number of overlap: 4
Similarity score: 5.59832

Alignment:
-----------TWVHWWWYTTTYTTTTTHTTTVWBH
BCCGCCCCGCCCCBB---------------------

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 2 Motif ID: 15 Motif name: kCAGCCAATmr

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH

Best Matches for Motif ID 15 (Highest to Lowest)

Dataset #: 2
Motif ID: 13
Motif name: tkAAATAATAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0320614

Alignment:
WHTATTATTTDH
-MBATTGGCTGH

Original motif     Consensus sequence: HDAAATAATAHW Reverse complement motif     Consensus sequence: WHTATTATTTDH


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.034958

Alignment:
HCAGAATGTHD
DCAGCCAATVR

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 2
Motif ID: 17
Motif name: wwAAATAATAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0358988

Alignment:
DDTATTATTTDH
-MBATTGGCTGH

Original motif     Consensus sequence: HDAAATAATADD Reverse complement motif     Consensus sequence: DDTATTATTTDH


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0360892

Alignment:
BCACCTGCABC
MBATTGGCTGH

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0376063

Alignment:
GGMGGRGGCGGVGC
--MBATTGGCTGH-

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 11
Similarity score: 0.0396371

Alignment:
HDWVAAAHAAAAAMAAAMWWWHBWA
--------DCAGCCAATVR------

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 2
Motif ID: 21
Motif name: wbgTAAATAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.538109

Alignment:
DHTATTTACBD-
-MBATTGGCTGH

Original motif     Consensus sequence: DBGTAAATAHD Reverse complement motif     Consensus sequence: DHTATTTACBD


Dataset #: 1
Motif ID: 3
Motif name: TFW3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 2.01586

Alignment:
CGGCYBCGCG----
---MBATTGGCTGH

Original motif     Consensus sequence: CGGCYBCGCG Reverse complement motif     Consensus sequence: CGCGBMGCCG


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 11
Number of overlap: 6
Similarity score: 2.5389

Alignment:
RGRGGAGRRGGHGGDG-----
----------MBATTGGCTGH

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 5
Similarity score: 3

Alignment:
CGGVGCCGCVGC------
-------DCAGCCAATVR

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 2 Motif ID: 16 Motif name: kcACCTGCAgc

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB

Best Matches for Motif ID 16 (Highest to Lowest)

Dataset #: 2
Motif ID: 19
Motif name: wsTACwGTAsw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0182895

Alignment:
DBTACWGTAVH
BCACCTGCABC

Original motif     Consensus sequence: HVTACWGTABD Reverse complement motif     Consensus sequence: DBTACWGTAVH


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0221745

Alignment:
DHACATTCTGH
BCACCTGCABC

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 2
Motif ID: 18
Motif name: sSGTCACGTGACSs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0280991

Alignment:
SGGTCACGTGACCS
---BCACCTGCABC

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0312321

Alignment:
GGMGGRGGCGGVGC
GBTGCAGGTGB---

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0370129

Alignment:
HVGCCCCGCCCCBB
-BCACCTGCABC--

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 2
Motif ID: 15
Motif name: kCAGCCAATmr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0407197

Alignment:
DCAGCCAATVR
GBTGCAGGTGB

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0429055

Alignment:
BCCGCCCCGCCCCBB
--BCACCTGCABC--

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0444938

Alignment:
KKKAGGDGGAKKMGBBGKMG
----GBTGCAGGTGB-----

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.538471

Alignment:
-RGRGGAGRRGGHGGDG
GBTGCAGGTGB------

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 1.54364

Alignment:
GCVGCGGCBCCG---
----BCACCTGCABC

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 2 Motif ID: 17 Motif name: wwAAATAATAtw

Original motif     Consensus sequence: HDAAATAATADD Reverse complement motif     Consensus sequence: DDTATTATTTDH

Best Matches for Motif ID 17 (Highest to Lowest)

Dataset #: 2
Motif ID: 13
Motif name: tkAAATAATAtw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0

Alignment:
HDAAATAATAHW
HDAAATAATADD

Original motif     Consensus sequence: HDAAATAATAHW Reverse complement motif     Consensus sequence: WHTATTATTTDH


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 12
Similarity score: 0.0565705

Alignment:
ABAAAAAAWHAAAAARAW
------HDAAATAATADD

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0575935

Alignment:
HDWVAAAHAAAAAMAAAMWWWHBWA
--HDAAATAATADD-----------

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0712963

Alignment:
ATKAAWTTTTRMAABAHHTW
--------DDTATTATTTDH

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0733516

Alignment:
TWAAWTTVTGAAAAAHWW
------HDAAATAATADD

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 2
Motif ID: 21
Motif name: wbgTAAATAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.560545

Alignment:
DHTATTTACBD-
DDTATTATTTDH

Original motif     Consensus sequence: DBGTAAATAHD Reverse complement motif     Consensus sequence: DHTATTTACBD


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.583032

Alignment:
-HCAGAATGTHD
DDTATTATTTDH

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 2
Motif ID: 19
Motif name: wsTACwGTAsw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.584715

Alignment:
-DBTACWGTAVH
HDAAATAATADD

Original motif     Consensus sequence: HVTACWGTABD Reverse complement motif     Consensus sequence: DBTACWGTAVH


Dataset #: 2
Motif ID: 15
Motif name: kCAGCCAATmr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.59598

Alignment:
-MBATTGGCTGH
DDTATTATTTDH

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 16
Number of overlap: 5
Similarity score: 3.59569

Alignment:
-------KKKAGGDGGAKKMGBBGKMG
DDTATTATTTDH---------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 2 Motif ID: 18 Motif name: sSGTCACGTGACSs

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS

Best Matches for Motif ID 18 (Highest to Lowest)

Dataset #: 2
Motif ID: 12
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0539097

Alignment:
BBGGGGCGGGGCVD
SGGTCACGTGACCS

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 2
Motif ID: 14
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0581955

Alignment:
BCCGCCCCGCCCCBB
SGGTCACGTGACCS-

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 1
Motif ID: 5
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 1.05855

Alignment:
--GCVCCGCCMCCYCC
SGGTCACGTGACCS--

Original motif     Consensus sequence: GGMGGRGGCGGVGC Reverse complement motif     Consensus sequence: GCVCCGCCMCCYCC


Dataset #: 1
Motif ID: 4
Motif name: TFF1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 1.06047

Alignment:
--CGGVGCCGCVGC
SGGTCACGTGACCS

Original motif     Consensus sequence: CGGVGCCGCVGC Reverse complement motif     Consensus sequence: GCVGCGGCBCCG


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 1.54742

Alignment:
---BCACCTGCABC
SGGTCACGTGACCS

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 1
Motif ID: 3
Motif name: TFW3
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 2.05201

Alignment:
----CGCGBMGCCG
SGGTCACGTGACCS

Original motif     Consensus sequence: CGGCYBCGCG Reverse complement motif     Consensus sequence: CGCGBMGCCG


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 14
Number of overlap: 7
Similarity score: 3.55896

Alignment:
-------CYYCBBCYYYTCCHCCTYYY
SGGTCACGTGACCS-------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1
Motif ID: 1
Motif name: TFW1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 5
Similarity score: 4.54286

Alignment:
---------CGCGAC
SGGTCACGTGACCS-

Original motif     Consensus sequence: GTCGCG Reverse complement motif     Consensus sequence: CGCGAC


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 12
Number of overlap: 5
Similarity score: 4.549

Alignment:
---------CHCCBCCKMCTCCKCM
SGGTCACGTGACCS-----------

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Dataset #: 1
Motif ID: 2
Motif name: TFW2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 4
Similarity score: 5.06029

Alignment:
SCGCGCGG----------
----SGGTCACGTGACCS

Original motif     Consensus sequence: SCGCGCGG Reverse complement motif     Consensus sequence: CCGCGCGS


Dataset #: 2 Motif ID: 19 Motif name: wsTACwGTAsw

Original motif     Consensus sequence: HVTACWGTABD Reverse complement motif     Consensus sequence: DBTACWGTAVH

Best Matches for Motif ID 19 (Highest to Lowest)

Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0199592

Alignment:
GBTGCAGGTGB
HVTACWGTABD

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 2
Motif ID: 17
Motif name: wwAAATAATAtw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0309343

Alignment:
DDTATTATTTDH
-HVTACWGTABD

Original motif     Consensus sequence: HDAAATAATADD Reverse complement motif     Consensus sequence: DDTATTATTTDH


Dataset #: 2
Motif ID: 13
Motif name: tkAAATAATAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0337121

Alignment:
HDAAATAATAHW
DBTACWGTAVH-

Original motif     Consensus sequence: HDAAATAATAHW Reverse complement motif     Consensus sequence: WHTATTATTTDH


Dataset #: 2
Motif ID: 21
Motif name: wbgTAAATAww
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.037518

Alignment:
DBGTAAATAHD
DBTACWGTAVH

Original motif     Consensus sequence: DBGTAAATAHD Reverse complement motif     Consensus sequence: DHTATTTACBD


Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0413797

Alignment:
WWHTTTTTCABAAWTTWA
---DBTACWGTAVH----

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0445707

Alignment:
WAHHTVTTYKAAAAWTTRAT
-------HVTACWGTABD--

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0472742

Alignment:
HDWVAAAHAAAAAMAAAMWWWHBWA
---DBTACWGTAVH-----------

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 2
Motif ID: 20
Motif name: dhACATTCTkh
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.544444

Alignment:
HCAGAATGTHD-
-HVTACWGTABD

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 9
Similarity score: 1.04742

Alignment:
WTKTTTTTHWTTTTTTBT--
---------DBTACWGTAVH

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 15
Number of overlap: 6
Similarity score: 2.54736

Alignment:
-----CYYCBBCYYYTCCHCCTYYY
DBTACWGTAVH--------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 2 Motif ID: 20 Motif name: dhACATTCTkh

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD

Best Matches for Motif ID 20 (Highest to Lowest)

Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 11
Similarity score: 0.00522383

Alignment:
WWHTTTTTCABAAWTTWA
HCAGAATGTHD-------

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 2
Motif ID: 16
Motif name: kcACCTGCAgc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.00731643

Alignment:
BCACCTGCABC
DHACATTCTGH

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 2
Motif ID: 17
Motif name: wwAAATAATAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0127231

Alignment:
DDTATTATTTDH
-HCAGAATGTHD

Original motif     Consensus sequence: HDAAATAATADD Reverse complement motif     Consensus sequence: DDTATTATTTDH


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 11
Similarity score: 0.014258

Alignment:
HDWVAAAHAAAAAMAAAMWWWHBWA
----HCAGAATGTHD----------

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 11
Similarity score: 0.0192045

Alignment:
ATKAAWTTTTRMAABAHHTW
-DHACATTCTGH--------

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 2
Motif ID: 13
Motif name: tkAAATAATAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0199621

Alignment:
WHTATTATTTDH
-HCAGAATGTHD

Original motif     Consensus sequence: HDAAATAATAHW Reverse complement motif     Consensus sequence: WHTATTATTTDH


Dataset #: 2
Motif ID: 15
Motif name: kCAGCCAATmr
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0247304

Alignment:
MBATTGGCTGH
DHACATTCTGH

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 10
Similarity score: 0.519904

Alignment:
ABAAAAAAWHAAAAARAW-
--------HCAGAATGTHD

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 2
Motif ID: 19
Motif name: wsTACwGTAsw
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.527917

Alignment:
-DBTACWGTAVH
DHACATTCTGH-

Original motif     Consensus sequence: HVTACWGTABD Reverse complement motif     Consensus sequence: DBTACWGTAVH


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 17
Number of overlap: 4
Similarity score: 3.5

Alignment:
-------CYYCBBCYYYTCCHCCTYYY
DHACATTCTGH----------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 2 Motif ID: 21 Motif name: wbgTAAATAww

Original motif     Consensus sequence: DBGTAAATAHD Reverse complement motif     Consensus sequence: DHTATTTACBD

Best Matches for Motif ID 21 (Highest to Lowest)

Dataset #: 2
Motif ID: 13
Motif name: tkAAATAATAtw
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0162338

Alignment:
HDAAATAATAHW
-DBGTAAATAHD

Original motif     Consensus sequence: HDAAATAATAHW Reverse complement motif     Consensus sequence: WHTATTATTTDH


Dataset #: 2
Motif ID: 17
Motif name: wwAAATAATAtw
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0164863

Alignment:
DDTATTATTTDH
DHTATTTACBD-

Original motif     Consensus sequence: HDAAATAATADD Reverse complement motif     Consensus sequence: DDTATTATTTDH


Dataset #: 1
Motif ID: 11
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 15
Number of overlap: 11
Similarity score: 0.0192768

Alignment:
TWVHWWWYTTTYTTTTTHTTTVWBH
--------------DHTATTTACBD

Original motif     Consensus sequence: HDWVAAAHAAAAAMAAAMWWWHBWA Reverse complement motif     Consensus sequence: TWVHWWWYTTTYTTTTTHTTTVWBH


Dataset #: 1
Motif ID: 7
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0283217

Alignment:
WTKTTTTTHWTTTTTTBT
DHTATTTACBD-------

Original motif     Consensus sequence: WTKTTTTTHWTTTTTTBT Reverse complement motif     Consensus sequence: ABAAAAAAWHAAAAARAW


Dataset #: 1
Motif ID: 8
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0308097

Alignment:
WWHTTTTTCABAAWTTWA
------DHTATTTACBD-

Original motif     Consensus sequence: WWHTTTTTCABAAWTTWA Reverse complement motif     Consensus sequence: TWAAWTTVTGAAAAAHWW


Dataset #: 1
Motif ID: 10
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0333874

Alignment:
ATKAAWTTTTRMAABAHHTW
-------DBGTAAATAHD--

Original motif     Consensus sequence: ATKAAWTTTTRMAABAHHTW Reverse complement motif     Consensus sequence: WAHHTVTTYKAAAAWTTRAT


Dataset #: 2
Motif ID: 19
Motif name: wsTACwGTAsw
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0472403

Alignment:
HVTACWGTABD
DHTATTTACBD

Original motif     Consensus sequence: HVTACWGTABD Reverse complement motif     Consensus sequence: DBTACWGTAVH


Dataset #: 2
Motif ID: 15
Motif name: kCAGCCAATmr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.554132

Alignment:
-MBATTGGCTGH
DHTATTTACBD-

Original motif     Consensus sequence: DCAGCCAATVR Reverse complement motif     Consensus sequence: MBATTGGCTGH


Dataset #: 1
Motif ID: 9
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 14
Number of overlap: 7
Similarity score: 2.0544

Alignment:
----KKKAGGDGGAKKMGBBGKMG
DHTATTTACBD-------------

Original motif     Consensus sequence: CYYCBBCYYYTCCHCCTYYY Reverse complement motif     Consensus sequence: KKKAGGDGGAKKMGBBGKMG


Dataset #: 1
Motif ID: 6
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 12
Number of overlap: 5
Similarity score: 3.05714

Alignment:
------CHCCBCCKMCTCCKCM
DHTATTTACBD-----------

Original motif     Consensus sequence: RGRGGAGRRGGHGGDG Reverse complement motif     Consensus sequence: CHCCBCCKMCTCCKCM


Results created by MOTIFSIM on 11-20-2016 13:21:41
Runtime: 601.6 seconds

MOTIFSIM is written by Ngoc Tam L. Tran
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