**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.1 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Phylogenetic tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # W-ChIPMotifs_DM230.txt 11 1 RSAT_peak-motifs_DM230.txt 10 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** *************************************************************** Combined Motifs for Top Best Match Motif ID 1 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 TFW3 Original Motif Original Motif GTCGCG CGGCYBCGCG GBCGCGCGGC Direction: Backward Position #: 1 Overlap #: 6 Alignment: ----GTCGCG CGGCYBCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Reverse Complement GBCGCGCGGC SGGTCACGTGACCS SGGTCRCGYGRCCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GBCGCGCGGC-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Original Motif SGGTCRCGYGRCCS GGMGGRGGCGGVGC GGVBSRSGCGGCSS Direction: Forward Position #: 1 Overlap #: 14 Alignment: SGGTCRCGYGRCCS GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF1 Original Motif Original Motif GGVBSRSGCGGCSS CGGVGCCGCVGC SGGVGVCGCGGCSS Direction: Forward Position #: 1 Overlap #: 12 Alignment: GGVBSRSGCGGCSS CGGVGCCGCVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Original Motif Original Motif SGGVGVCGCGGCSS SCGCGCGG SSGCGCSGCGGCSS Direction: Forward Position #: 1 Overlap #: 8 Alignment: SGGVGVCGCGGCSS SCGCGCGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Reverse Complement SSGCGCSGCGGCSS BBGGGGCGGGGCVD SSGBGSGGCGGSGCVD Direction: Forward Position #: 3 Overlap #: 12 Alignment: SSGCGCSGCGGCSS-- --BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Reverse Complement SSGBGSGGCGGSGCVD BBGGGGCGGGGCGGB BSGGGGSGSGGCGSVD Direction: Forward Position #: 1 Overlap #: 15 Alignment: SSGBGSGGCGGSGCVD BBGGGGCGGGGCGGB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Original Motif BSGGGGSGSGGCGSVD RGRGGAGRRGGHGGDG VSRGGRSGRGGVGSDG Direction: Forward Position #: 1 Overlap #: 16 Alignment: BSGGGGSGSGGCGSVD RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif CHSCVCCMCSMCCMSV CYYCBBCYYYTCCHCCTYYY CHSCBCCVCCHCCHCCHCCTYYY Direction: Forward Position #: 4 Overlap #: 13 Alignment: CHSCVCCMCSMCCMSV------- ---CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Original Motif CHSCBCCVCCHCCHCCHCCTYYY BCACCTGCABC BCACCTSCABCHCCHCCHCCTYYY Direction: Forward Position #: 2 Overlap #: 10 Alignment: -CHSCBCCVCCHCCHCCHCCTYYY BCACCTGCABC------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh Combined Motif Original Motif Original Motif BCACCTSCABCHCCHCCHCCTYYY DHACATTCTGH BCACCTSCABCHCCHCCHCCDHACATTCTGH Direction: Forward Position #: 21 Overlap #: 4 Alignment: BCACCTSCABCHCCHCCHCCTYYY------- --------------------DHACATTCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 2 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 csGCCCCGCCCCsc Original Motif Reverse Complement SCGCGCGG BBGGGGCGGGGCVD GGCVDBSGSGCGGB Direction: Backward Position #: 6 Overlap #: 8 Alignment: -SCGCGCGG----- BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement GGCVDBSGSGCGGB BBGGGGCGGGGCGGB GGCBGGGGCGSGGCGGB Direction: Forward Position #: 3 Overlap #: 12 Alignment: GGCVDBSGSGCGGB--- --BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement BCCGCCSCGCCCCBGCC GCVCCGCCMCCYCC BCCGCCCCGCCCCSBCC Direction: Forward Position #: 4 Overlap #: 14 Alignment: BCCGCCSCGCCCCBGCC ---GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Reverse Complement BCCGCCCCGCCCCSBCC GCVGCGGCBCCG BCCGCCSCGSCBCCBCC Direction: Forward Position #: 4 Overlap #: 12 Alignment: BCCGCCCCGCCCCSBCC ---GCVGCGGCBCCG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Reverse Complement Reverse Complement GGBGGBGSCGSGGCGGB CGCGBMGCCG SGCGGVGCCGSGGCGGB Direction: Forward Position #: 1 Overlap #: 10 Alignment: GGBGGBGSCGSGGCGGB CGCGBMGCCG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif SGCGGVGCCGSGGCGGB RGRGGAGRRGGHGGDG SGCGGRGSMGSRGSVGGDG Direction: Forward Position #: 4 Overlap #: 14 Alignment: SGCGGVGCCGSGGCGGB-- ---RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Reverse Complement SGCGGRGSMGSRGSVGGDG KKKAGGDGGAKKMGBBGKMG KGGHGGDGGMGGVGSVGGHG Direction: Forward Position #: 2 Overlap #: 19 Alignment: -SGCGGRGSMGSRGSVGGDG KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Original Motif Original Motif KGGHGGDGGMGGVGSVGGHG SGGTCACGTGACCS KGGHGGDGGMGGVGSSGKCRCGTGACCS Direction: Forward Position #: 15 Overlap #: 6 Alignment: KGGHGGDGGMGGVGSVGGHG-------- --------------SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Combined Motif Reverse Complement Reverse Complement SGGTCACGKGRCSSCBCCYCCHCCDCCY CGCGAC SGGTCACGBGACSSCBCCYCCHCCDCCY Direction: Forward Position #: 7 Overlap #: 6 Alignment: SGGTCACGKGRCSSCBCCYCCHCCDCCY ------CGCGAC---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Reverse Complement SGGTCACGBGACSSCBCCYCCHCCDCCY GBTGCAGGTGB SSKKCASGTGVCSSCBCCYCCHCCDCCY Direction: Forward Position #: 1 Overlap #: 11 Alignment: SGGTCACGBGACSSCBCCYCCHCCDCCY GBTGCAGGTGB----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 3 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 TFF1 Original Motif Original Motif CGGCYBCGCG CGGVGCCGCVGC GCCGGCKCCGCG Direction: Backward Position #: 3 Overlap #: 10 Alignment: CGGCYBCGCG-- CGGVGCCGCVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif GCCGGCKCCGCG GGMGGRGGCGGVGC GCSGGSGVSGCGGVGC Direction: Forward Position #: 3 Overlap #: 10 Alignment: GCCGGCKCCGCG---- --GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Original Motif GCVCCGCSVCSCCSGC HVGCCCCGCCCCBB GCVCCGCCCCGCCCSCB Direction: Forward Position #: 4 Overlap #: 13 Alignment: GCVCCGCSVCSCCSGC- ---HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif GCVCCGCCCCGCCCSCB BCCGCCCCGCCCCBB GCVCCGCCCCGCCCCBB Direction: Forward Position #: 3 Overlap #: 15 Alignment: GCVCCGCCCCGCCCSCB --BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif GCVCCGCCCCGCCCCBB CYYCBBCYYYTCCHCCTYYY GCVCCSCCCCBCCYCCHCCTYYY Direction: Forward Position #: 4 Overlap #: 14 Alignment: GCVCCGCCCCGCCCCBB------ ---CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif KKKAGGDGGKGGBGGGGSGGVGC RGRGGAGRRGGHGGDG KKKAGGDGGRGGVGGVGSDGVGC Direction: Forward Position #: 5 Overlap #: 16 Alignment: KKKAGGDGGKGGBGGGGSGGVGC ----RGRGGAGRRGGHGGDG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Original Motif Original Motif KKKAGGDGGRGGVGGVGSDGVGC SGGTCACGTGACCS KKKAGGDGGRGGVGGVGSBGGKCACGTGACCS Direction: Forward Position #: 19 Overlap #: 5 Alignment: KKKAGGDGGRGGVGGVGSDGVGC--------- ------------------SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 Combined Motif Original Motif Original Motif KKKAGGDGGRGGVGGVGSBGGKCACGTGACCS SCGCGCGG KKSGSGCGGRGGVGGVGSBGGKCACGTGACCS Direction: Forward Position #: 2 Overlap #: 8 Alignment: KKKAGGDGGRGGVGGVGSBGGKCACGTGACCS -SCGCGCGG----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Reverse Complement Reverse Complement SGGTCACGTGYCCBSCVCCVCCMCCGCSCSYY GBTGCAGGTGB SSKKCASGTGYCCBSCVCCVCCMCCGCSCSYY Direction: Forward Position #: 1 Overlap #: 11 Alignment: SGGTCACGTGYCCBSCVCCVCCMCCGCSCSYY GBTGCAGGTGB--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 4 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 TFF11 Original Motif Original Motif CGGVGCCGCVGC GGMGGRGGCGGVGC GGVGGVGSCGSVGC Direction: Forward Position #: 3 Overlap #: 12 Alignment: --CGGVGCCGCVGC GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Reverse Complement GGVGGVGSCGSVGC BBGGGGCGGGGCVD GGVGGGGGCGGGGCVD Direction: Forward Position #: 3 Overlap #: 12 Alignment: GGVGGVGSCGSVGC-- --BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif HVGCCCCGCCCCCVCC CYYCBBCYYYTCCHCCTYYY CHSCVSCBCCBCCBCCTYYY Direction: Forward Position #: 1 Overlap #: 16 Alignment: HVGCCCCGCCCCCVCC---- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif CHSCVSCBCCBCCBCCTYYY BCCGCCCCGCCCCBB CHSSCCCCSCCCCBCCTYYY Direction: Forward Position #: 1 Overlap #: 15 Alignment: CHSCVSCBCCBCCBCCTYYY BCCGCCCCGCCCCBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement CHSSCCCCSCCCCBCCTYYY CHCCBCCKMCTCCKCM CHSCCCCBSCBCCKCCTCCY Direction: Forward Position #: 4 Overlap #: 16 Alignment: CHSSCCCCSCCCCBCCTYYY ---CHCCBCCKMCTCCKCM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Reverse Complement Reverse Complement KGGAGGRGGBGSBGGGGSDG SGGTCACGTGACCS KGGAGGRGGBGSBGGVGGTSACGTGACCS Direction: Forward Position #: 16 Overlap #: 5 Alignment: KGGAGGRGGBGSBGGGGSDG--------- ---------------SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 Combined Motif Reverse Complement Original Motif SGGTCACGTSACCVCCBSCBCCKCCTCCY CGGCYBCGCG SGGTCACGKCDSCSCSBSCBCCKCCTCCY Direction: Forward Position #: 7 Overlap #: 10 Alignment: SGGTCACGTSACCVCCBSCBCCKCCTCCY ------CGGCYBCGCG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Reverse Complement Original Motif KGGAGGRGGBGSBSGSGSDGRCGTGACCS SCGCGCGG KVGMGSGGGBGSBSGSGSDGRCGTGACCS Direction: Forward Position #: 1 Overlap #: 8 Alignment: KGGAGGRGGBGSBSGSGSDGRCGTGACCS SCGCGCGG--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Reverse Complement Reverse Complement SGGTCACGKCDSCSCSBSCBCCCSCRCVY GBTGCAGGTGB SSKKCASGTSBSCSCSBSCBCCCSCRCVY Direction: Forward Position #: 1 Overlap #: 11 Alignment: SGGTCACGKCDSCSCSBSCBCCCSCRCVY GBTGCAGGTGB------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Combined Motif Reverse Complement Reverse Complement KVGMGSGGGBGSBSGSGSVSACSTGYRSS CGCGAC KCGCGVSGGBGSBSGSGSVSACSTGYRSS Direction: Forward Position #: 2 Overlap #: 6 Alignment: KVGMGSGGGBGSBSGSGSVSACSTGYRSS -CGCGAC---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 5 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 TFM2 Original Motif Original Motif GGMGGRGGCGGVGC RGRGGAGRRGGHGGDG DGGGAGGRGGVGGVGS Direction: Backward Position #: 3 Overlap #: 14 Alignment: GGMGGRGGCGGVGC-- RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif SCBCCVCCKCCTCCCH CYYCBBCYYYTCCHCCTYYY SCBCCVCCKCCYCBCCHCCTYYY Direction: Forward Position #: 4 Overlap #: 13 Alignment: SCBCCVCCKCCTCCCH------- ---CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Reverse Complement KKKAGGDGGBGMGGRGGVGGVGS BBGGGGCGGGGCGGB KKKDBGGGGCGGGGCGGBGGVGS Direction: Forward Position #: 4 Overlap #: 15 Alignment: KKKAGGDGGBGMGGRGGVGGVGS ---BBGGGGCGGGGCGGB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Original Motif SCBCCBCCGCCCCGCCCCBDYYY HVGCCCCGCCCCBB SCBCCVSCCCCSCCCCBCBDYYY Direction: Forward Position #: 5 Overlap #: 14 Alignment: SCBCCBCCGCCCCGCCCCBDYYY ----HVGCCCCGCCCCBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Reverse Complement Original Motif KKKDBGBGGGGSGGGGSVGGVGS CGGVGCCGCVGC KKKHGGVGSSGCGGCGSVGGVGS Direction: Forward Position #: 4 Overlap #: 12 Alignment: KKKDBGBGGGGSGGGGSVGGVGS ---CGGVGCCGCVGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Original Motif Reverse Complement KKKHGGVGSSGCGGCGSVGGVGS SGGTCACGTGACCS KKKVGGDSACGYGRCSSVGGVGS Direction: Forward Position #: 4 Overlap #: 14 Alignment: KKKHGGVGSSGCGGCGSVGGVGS ---SGGTCACGTGACCS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Reverse Complement Original Motif SCBCCVSSGKCMCGTSDCCVYYY BCACCTGCABC VCACCTGCRKCMCGTSDCCVYYY Direction: Forward Position #: 1 Overlap #: 11 Alignment: SCBCCVSSGKCMCGTSDCCVYYY BCACCTGCABC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Reverse Complement Reverse Complement KKKVGGDSACGYGYKGCAGGTGV CGCGBMGCCG CGBGBVGBCGCGYGYKGCAGGTGV Direction: Forward Position #: 2 Overlap #: 9 Alignment: -KKKVGGDSACGYGYKGCAGGTGV CGCGBMGCCG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Reverse Complement Original Motif VCACCTGCRKCMCGCGBCVBCBCG SCGCGCGG BCRCSYGSRKCMCGCGBCVBCBCG Direction: Forward Position #: 1 Overlap #: 8 Alignment: VCACCTGCRKCMCGCGBCVBCBCG SCGCGCGG---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Combined Motif Original Motif Reverse Complement BCRCSYGSRKCMCGCGBCVBCBCG CGCGAC BCRCSCGSGDCMCGCGBCVBCBCG Direction: Forward Position #: 6 Overlap #: 6 Alignment: BCRCSYGSRKCMCGCGBCVBCBCG -----CGCGAC------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 6 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 TFM12 Reverse Complement Original Motif CHCCBCCKMCTCCKCM CYYCBBCYYYTCCHCCTYYY CHCCBSCBCCTCCBCCTYYY Direction: Forward Position #: 1 Overlap #: 16 Alignment: CHCCBCCKMCTCCKCM---- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement CHCCBSCBCCTCCBCCTYYY TWVHWWWYTTTYTTTTTHTTTVWBH CHCCBBCHHHTYYTYYTBYYTHTTTVWBH Direction: Forward Position #: 5 Overlap #: 16 Alignment: CHCCBSCBCCTCCBCCTYYY--------- ----TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif CHCCBBCHHHTYYTYYTBYYTHTTTVWBH BCCGCCCCGCCCCBB CHCCKCCCCGYCCYBBTBYYTHTTTVWBH Direction: Forward Position #: 2 Overlap #: 15 Alignment: CHCCBBCHHHTYYTYYTBYYTHTTTVWBH -BCCGCCCCGCCCCBB------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement CHCCKCCCCGYCCYBBTBYYTHTTTVWBH GCVCCGCCMCCYCC CHCCKCSCCSCSCCHCBBYCTHTTTVWBH Direction: Forward Position #: 7 Overlap #: 14 Alignment: CHCCKCCCCGYCCYBBTBYYTHTTTVWBH ------GCVCCGCCMCCYCC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Original Motif CHCCKCSCCSCSCCHCBBYCTHTTTVWBH HVGCCCCGCCCCBB CHCCBCGCCCCGCCCCBBYCTHTTTVWBH Direction: Forward Position #: 5 Overlap #: 14 Alignment: CHCCKCSCCSCSCCHCBBYCTHTTTVWBH ----HVGCCCCGCCCCBB----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Reverse Complement CHCCBCGCCCCGCCCCBBYCTHTTTVWBH GCVGCGGCBCCG CHCCBCGCCSCGSCYCCBYCTHTTTVWBH Direction: Forward Position #: 7 Overlap #: 12 Alignment: CHCCBCGCCCCGCCCCBBYCTHTTTVWBH ------GCVGCGGCBCCG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Original Motif Reverse Complement CHCCBCGCCSCGSCYCCBYCTHTTTVWBH CGCGBMGCCG CSCSBVGCCGCGSCYCCBYCTHTTTVWBH Direction: Forward Position #: 1 Overlap #: 10 Alignment: CHCCBCGCCSCGSCYCCBYCTHTTTVWBH CGCGBMGCCG------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Original Motif Original Motif CSCSBVGCCGCGSCYCCBYCTHTTTVWBH BCACCTGCABC CSCBBASCYGCRSCYCCBYCTHTTTVWBH Direction: Forward Position #: 4 Overlap #: 11 Alignment: CSCSBVGCCGCGSCYCCBYCTHTTTVWBH ---BCACCTGCABC--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Reverse Complement Reverse Complement HDWVAAAHAGKBGGKGSKGCMGSTBBGSG ABAAAAAAWHAAAAARAW WDAAAAAAABRVRRDGHDGCMGSTBBGSG Direction: Forward Position #: 1 Overlap #: 18 Alignment: HDWVAAAHAGKBGGKGSKGCMGSTBBGSG ABAAAAAAWHAAAAARAW----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement WDAAAAAAABRVRRDGHDGCMGSTBBGSG TWAAWTTVTGAAAAAHWW THAAAWWVWGADRAADWWGCMGSTBBGSG Direction: Forward Position #: 1 Overlap #: 18 Alignment: WDAAAAAAABRVRRDGHDGCMGSTBBGSG TWAAWTTVTGAAAAAHWW----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 7 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 TFM11 Reverse Complement Original Motif ABAAAAAAWHAAAAARAW HDWVAAAHAAAAAMAAAMWWWHBWA WHBWAWBAAADAAADAAAAAVWWHD Direction: Backward Position #: 6 Overlap #: 18 Alignment: --ABAAAAAAWHAAAAARAW----- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Original Motif WHBWAWBAAADAAADAAAAAVWWHD ATKAAWTTTTRMAABAHHTW ATKAWWDTHWDAAADAAWWAAAAAVWWHD Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----WHBWAWBAAADAAADAAAAAVWWHD ATKAAWTTTTRMAABAHHTW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif BHWWBTTTTTWWTTDTTTHWHADWWTRAT WWHTTTTTCABAAWTTWA BHWWBTTTHTWTTTHWTWAWTWWAWTRAT Direction: Forward Position #: 7 Overlap #: 18 Alignment: BHWWBTTTTTWWTTDTTTHWHADWWTRAT ------WWHTTTTTCABAAWTTWA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif BHWWBTTTHTWTTTHWTWAWTWWAWTRAT CYYCBBCYYYTCCHCCTYYY BCHYYHBYHTHTYYHHYWHHYWWAWTRAT Direction: Forward Position #: 2 Overlap #: 20 Alignment: BHWWBTTTHTWTTTHWTWAWTWWAWTRAT -CYYCBBCYYYTCCHCCTYYY-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Reverse Complement BCHYYHBYHTHTYYHHYWHHYWWAWTRAT DDTATTATTTDH BCHYYHHHTWTTATTTHHHHYWWAWTRAT Direction: Forward Position #: 7 Overlap #: 12 Alignment: BCHYYHBYHTHTYYHHYWHHYWWAWTRAT ------DDTATTATTTDH----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Reverse Complement BCHYYHHHTWTTATTTHHHHYWWAWTRAT WHTATTATTTDH BCHYYHHHTATTATTTHHHHYWWAWTRAT Direction: Forward Position #: 7 Overlap #: 12 Alignment: BCHYYHHHTWTTATTTHHHHYWWAWTRAT ------WHTATTATTTDH----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Reverse Complement Reverse Complement ATKAWTWWMHDHHAAATAATAHHHKMHGD DHTATTTACBD WTTAWTTAMHDHHAAATAATAHHHKMHGD Direction: Forward Position #: 1 Overlap #: 11 Alignment: ATKAWTWWMHDHHAAATAATAHHHKMHGD DHTATTTACBD------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh Combined Motif Reverse Complement Original Motif BCHYYHHHTATTATTTHHDHRTAAWTAAW DHACATTCTGH BCHYYDHAYATTMTKHHHDHRTAAWTAAW Direction: Forward Position #: 6 Overlap #: 11 Alignment: BCHYYHHHTATTATTTHHDHRTAAWTAAW -----DHACATTCTGH------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Reverse Complement BCHYYDHAYATTMTKHHHDHRTAAWTAAW CHCCBCCKMCTCCKCM CHHCHBCKHMTMYTCHKHHHDHRTAAWTAAW Direction: Forward Position #: 3 Overlap #: 14 Alignment: --BCHYYDHAYATTMTKHHHDHRTAAWTAAW CHCCBCCKMCTCCKCM--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wsTACwGTAsw Reverse Complement Original Motif WTTAWTTAMHDHHHRHGAMYAYDRGBHGDDG HVTACWGTABD HHTAYWKWABDHHHRHGAMYAYDRGBHGDDG Direction: Forward Position #: 1 Overlap #: 11 Alignment: WTTAWTTAMHDHHHRHGAMYAYDRGBHGDDG HVTACWGTABD-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 8 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 TFM13 Reverse Complement Original Motif TWAAWTTVTGAAAAAHWW ATKAAWTTTTRMAABAHHTW ATWAAWTTHTGAAAWAHWWW Direction: Forward Position #: 2 Overlap #: 18 Alignment: -TWAAWTTVTGAAAAAHWW- ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Reverse Complement WWWHTWTTTCAHAAWTTWAT TWVHWWWYTTTYTTTTTHTTTVWBH WWWHTWBWTHWHWWTTTDWTTHTTTVWBH Direction: Forward Position #: 5 Overlap #: 16 Alignment: WWWHTWTTTCAHAAWTTWAT--------- ----TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Reverse Complement HDWVAAAHAAWDAAAWWHWHAWVWAHWWW ABAAAAAAWHAAAAARAW WDAAAAAAAHDAAAADWHWHAWVWAHWWW Direction: Forward Position #: 1 Overlap #: 18 Alignment: HDWVAAAHAAWDAAAWWHWHAWVWAHWWW ABAAAAAAWHAAAAARAW----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Reverse Complement Reverse Complement WWWHTWBWTHWHWDTTTTDHTTTTTTTHW DDTATTATTTDH WWWHTWDHTAWTATTTTDDHTTTTTTTHW Direction: Forward Position #: 7 Overlap #: 12 Alignment: WWWHTWBWTHWHWDTTTTDHTTTTTTTHW ------DDTATTATTTDH----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Reverse Complement Original Motif WDAAAAAAAHDDAAAATAWTAHDWAHWWW HDAAATAATAHW HDAAAWAAWAHWAAAATAWTAHDWAHWWW Direction: Forward Position #: 1 Overlap #: 12 Alignment: WDAAAAAAAHDDAAAATAWTAHDWAHWWW HDAAATAATAHW----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Original Motif Reverse Complement HDAAAWAAWAHWAAAATAWTAHDWAHWWW HCAGAATGTHD HBARAAWRTADWAAAATAWTAHDWAHWWW Direction: Forward Position #: 1 Overlap #: 11 Alignment: HDAAAWAAWAHWAAAATAWTAHDWAHWWW HCAGAATGTHD------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Reverse Complement Reverse Complement WWWHTWDHTAWTATTTTWDTAMWTTMTBH DHTATTTACBD WWWHTWDHTATTWWYHDWDTAMWTTMTBH Direction: Forward Position #: 7 Overlap #: 11 Alignment: WWWHTWDHTAWTATTTTWDTAMWTTMTBH ------DHTATTTACBD------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 9 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 TFM11 Original Motif Reverse Complement CYYCBBCYYYTCCHCCTYYY TWVHWWWYTTTYTTTTTHTTTVWBH TVWBHYHBHDDYYYTTCYHBYTBTT Direction: Backward Position #: 6 Overlap #: 20 Alignment: CYYCBBCYYYTCCHCCTYYY----- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Reverse Complement Reverse Complement AAVAMVHMGAAMMKDDDBHKHDWVA ABAAAAAAWHAAAAARAW ABAAAAAAHHRAAAADAHDBHKHDWVA Direction: Forward Position #: 3 Overlap #: 16 Alignment: --AAVAMVHMGAAMMKDDDBHKHDWVA ABAAAAAAWHAAAAARAW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Reverse Complement TVWBHYHBHHTHTTTTMHHTTTTTTBT CHCCBCCKMCTCCKCM CTVHBVCDVMTHCTYHTMHHTTTTTTBT Direction: Forward Position #: 2 Overlap #: 15 Alignment: -TVWBHYHBHHTHTTTTMHHTTTTTTBT CHCCBCCKMCTCCKCM------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif CTVHBVCDVMTHCTYHTMHHTTTTTTBT BCCGCCCCGCCCCBB CTVHBGCYCCKCCYCBBMHHTTTTTTBT Direction: Forward Position #: 3 Overlap #: 15 Alignment: CTVHBVCDVMTHCTYHTMHHTTTTTTBT --BCCGCCCCGCCCCBB----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Original Motif CTVHBGCYCCKCCYCBBMHHTTTTTTBT HVGCCCCGCCCCBB CTVHBVSCCCSSCCCCBHHHTTTTTTBT Direction: Forward Position #: 5 Overlap #: 14 Alignment: CTVHBGCYCCKCCYCBBMHHTTTTTTBT ----HVGCCCCGCCCCBB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement CTVHBVSCCCSSCCCCBHHHTTTTTTBT GCVCCGCCMCCYCC CTVHBVSCCCCGCCCCBBCCTTTTTTBT Direction: Forward Position #: 7 Overlap #: 14 Alignment: CTVHBVSCCCSSCCCCBHHHTTTTTTBT ------GCVCCGCCMCCYCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Reverse Complement CTVHBVSCCCCGCCCCBBCCTTTTTTBT GCVGCGGCBCCG CTVGCVGCSSCBCCVCBBCCTTTTTTBT Direction: Forward Position #: 4 Overlap #: 12 Alignment: CTVHBVSCCCCGCCCCBBCCTTTTTTBT ---GCVGCGGCBCCG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Original Motif Reverse Complement CTVGCVGCSSCBCCVCBBCCTTTTTTBT CGCGBMGCCG CKCGBVGCCGCBCCVCBBCCTTTTTTBT Direction: Forward Position #: 1 Overlap #: 10 Alignment: CTVGCVGCSSCBCCVCBBCCTTTTTTBT CGCGBMGCCG------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif CKCGBVGCCGCBCCVCBBCCTTTTTTBT ATKAAWTTTTRMAABAHHTW CKCGBVGCCGCBCCVCBBCCTTTTWTBWAWTTTTRMAABAHHTW Direction: Forward Position #: 25 Overlap #: 4 Alignment: CKCGBVGCCGCBCCVCBBCCTTTTTTBT---------------- ------------------------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Original Motif Original Motif CKCGBVGCCGCBCCVCBBCCTTTTWTBWAWTTTTRMAABAHHTW SCGCGCGG SCGCGCGGCCGCBCCVCBBCCTTTTWTBWAWTTTTRMAABAHHTW Direction: Forward Position #: 2 Overlap #: 7 Alignment: -CKCGBVGCCGCBCCVCBBCCTTTTWTBWAWTTTTRMAABAHHTW SCGCGCGG------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 10 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 TFM11 Reverse Complement Reverse Complement WAHHTVTTYKAAAAWTTRAT TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWAHYTDTTTKWWWWTTTDWTH Direction: Forward Position #: 5 Overlap #: 20 Alignment: ----WAHHTVTTYKAAAAWTTRAT- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement TWVHWAHYTDTTTKWWWWTTTDWTH TWAAWTTVTGAAAAAHWW TWAAWWTHTKWWDWAWWWTTTDWTH Direction: Forward Position #: 1 Overlap #: 18 Alignment: TWVHWAHYTDTTTKWWWWTTTDWTH TWAAWTTVTGAAAAAHWW------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif TWAAWWTHTKWWDWAWWWTTTDWTH WTKTTTTTHWTTTTTTBT TWAAWWTBTTTTDDWTWWTTTBWTH Direction: Forward Position #: 6 Overlap #: 18 Alignment: TWAAWWTHTKWWDWAWWWTTTDWTH -----WTKTTTTTHWTTTTTTBT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Reverse Complement TWAAWWTBTTTTDDWTWWTTTBWTH WHTATTATTTDH TWAAWWTATTWTTWDHWWTTTBWTH Direction: Forward Position #: 5 Overlap #: 12 Alignment: TWAAWWTBTTTTDDWTWWTTTBWTH ----WHTATTATTTDH--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Reverse Complement TWAAWWTATTWTTWDHWWTTTBWTH DDTATTATTTDH TWAAWHTATTATTTDHWWTTTBWTH Direction: Forward Position #: 5 Overlap #: 12 Alignment: TWAAWWTATTWTTWDHWWTTTBWTH ----DDTATTATTTDH--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Reverse Complement Original Motif HAWBAAAWWHDAAATAATAHWTTWA DBGTAAATAHD HHDTAAATAHDAAATAATAHWTTWA Direction: Forward Position #: 1 Overlap #: 11 Alignment: HAWBAAAWWHDAAATAATAHWTTWA DBGTAAATAHD-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement TWAAWHTATTATTTDHTATTTAHHH KKKAGGDGGAKKMGBBGKMG TWAAWHTATTATTTDHTAKTTABBDGGAKKMGBBGKMG Direction: Forward Position #: 19 Overlap #: 7 Alignment: TWAAWHTATTATTTDHTATTTAHHH------------- ------------------KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh Combined Motif Original Motif Original Motif TWAAWHTATTATTTDHTAKTTABBDGGAKKMGBBGKMG DHACATTCTGH TWADHAYATTMTKWDHTAKTTABBDGGAKKMGBBGKMG Direction: Forward Position #: 4 Overlap #: 11 Alignment: TWAAWHTATTATTTDHTAKTTABBDGGAKKMGBBGKMG ---DHACATTCTGH------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Original Motif Reverse Complement TWADHAYATTMTKWDHTAKTTABBDGGAKKMGBBGKMG MBATTGGCTGH TWADHAYATTSKYTDHTAKTTABBDGGAKKMGBBGKMG Direction: Forward Position #: 6 Overlap #: 11 Alignment: TWADHAYATTMTKWDHTAKTTABBDGGAKKMGBBGKMG -----MBATTGGCTGH---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw Combined Motif Original Motif Original Motif TWADHAYATTSKYTDHTAKTTABBDGGAKKMGBBGKMG HVTACWGTABD TWHVTACAKTAKBTDHTAKTTABBDGGAKKMGBBGKMG Direction: Forward Position #: 3 Overlap #: 11 Alignment: TWADHAYATTSKYTDHTAKTTABBDGGAKKMGBBGKMG --HVTACWGTABD------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 11 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 TFM13 Reverse Complement Reverse Complement TWVHWWWYTTTYTTTTTHTTTVWBH WAHHTVTTYKAAAAWTTRAT TWHHTDTTTTWHWWTTTDWTTVWBH Direction: Forward Position #: 1 Overlap #: 20 Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH WAHHTVTTYKAAAAWTTRAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif TWHHTDTTTTWHWWTTTDWTTVWBH CYYCBBCYYYTCCHCCTYYY YWBHBBYYYTTCHHHYTBHYTVWBH Direction: Forward Position #: 1 Overlap #: 20 Alignment: TWHHTDTTTTWHWWTTTDWTTVWBH CYYCBBCYYYTCCHCCTYYY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Reverse Complement Reverse Complement HDWVAMHVAMHHDGAAMMKVVDBWK ABAAAAAAWHAAAAARAW ABDAADAAHHAAAAWRAAMMKVVDBWK Direction: Forward Position #: 3 Overlap #: 16 Alignment: --HDWVAMHVAMHHDGAAMMKVVDBWK ABAAAAAAWHAAAAARAW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement ABDAADAAHHAAAAWRAAMMKVVDBWK TWAAWTTVTGAAAAAHWW ABDAWDAAWTWVWDADAAAHDDVDBWK Direction: Forward Position #: 5 Overlap #: 18 Alignment: ABDAADAAHHAAAAWRAAMMKVVDBWK ----TWAAWTTVTGAAAAAHWW----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Reverse Complement Reverse Complement YWBHBDDHTTTDTHWBWAWTTDWTDBT DDTATTATTTDH YWBHBDDTWTTATHTBWAWTTDWTDBT Direction: Forward Position #: 6 Overlap #: 12 Alignment: YWBHBDDHTTTDTHWBWAWTTDWTDBT -----DDTATTATTTDH---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Reverse Complement YWBHBDDTWTTATHTBWAWTTDWTDBT WHTATTATTTDH YWBHBWDTATTATTTDHAWTTDWTDBT Direction: Forward Position #: 6 Overlap #: 12 Alignment: YWBHBDDTWTTATHTBWAWTTDWTDBT -----WHTATTATTTDH---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Original Motif Reverse Complement YWBHBWDTATTATTTDHAWTTDWTDBT DHTATTTACBD YWBHBDHTATTWWYDDHAWTTDWTDBT Direction: Forward Position #: 6 Overlap #: 11 Alignment: YWBHBWDTATTATTTDHAWTTDWTDBT -----DHTATTTACBD----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh Combined Motif Original Motif Reverse Complement YWBHBDHTATTWWYDDHAWTTDWTDBT HCAGAATGTHD YHYAGAATRTTWWYDDHAWTTDWTDBT Direction: Forward Position #: 2 Overlap #: 11 Alignment: YWBHBDHTATTWWYDDHAWTTDWTDBT -HCAGAATGTHD--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Reverse Complement ABDAWDAAWTHDDKWWAAMATTCTKHK CHCCBCCKMCTCCKCM ABDAWDAAWTHDDKWWAAMATTCHVMBCCKMCTCCKCM Direction: Forward Position #: 23 Overlap #: 5 Alignment: ABDAWDAAWTHDDKWWAAMATTCTKHK----------- ----------------------CHCCBCCKMCTCCKCM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw Combined Motif Reverse Complement Original Motif RGRGGAGRRGGBRVHGAATRTTWWYDDHAWTTDWTDBT HVTACWGTABD RGRGGAGRRGGBRVHGAATRTTWWYDDHAWTTHHTACWGTABD Direction: Forward Position #: 33 Overlap #: 6 Alignment: RGRGGAGRRGGBRVHGAATRTTWWYDDHAWTTDWTDBT----- --------------------------------HVTACWGTABD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 12 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc cccGCCCCGCCCCsb Original Motif Original Motif HVGCCCCGCCCCBB BCCGCCCCGCCCCBB CCGCCCCGCCCCBBB Direction: Backward Position #: 1 Overlap #: 14 Alignment: -HVGCCCCGCCCCBB BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement BBBGGGGCGGGGCGG KKKAGGDGGAKKMGBBGKMG BBBGGRGSGGGGCKVGBBGKMG Direction: Forward Position #: 3 Overlap #: 13 Alignment: BBBGGGGCGGGGCGG------- --KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Reverse Complement CYYCBBCBYGCCCCSCMCCBBB CHCCBCCKMCTCCKCM CYYCCBCHBSCYCCKCCYCHBB Direction: Forward Position #: 5 Overlap #: 16 Alignment: CYYCBBCBYGCCCCSCMCCBBB ----CHCCBCCKMCTCCKCM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement CYYCCBCHBSCYCCKCCYCHBB GCVCCGCCMCCYCC CCBCCGCCHCCYCCKCCYCHBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: CYYCCBCHBSCYCCKCCYCHBB GCVCCGCCMCCYCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Reverse Complement Original Motif BBDGMGGYGGKGGDGGCGGBGG SGGTCACGTGACCS BBDGMGGYGGKGGDGGSGGKSRCGTGACCS Direction: Forward Position #: 17 Overlap #: 6 Alignment: BBDGMGGYGGKGGDGGCGGBGG-------- ----------------SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Reverse Complement BBDGMGGYGGKGGDGGSGGKSRCGTGACCS GCVGCGGCBCCG GCVGCGGCBSCGGDGGSGGKSRCGTGACCS Direction: Forward Position #: 1 Overlap #: 12 Alignment: BBDGMGGYGGKGGDGGSGGKSRCGTGACCS GCVGCGGCBCCG------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 Combined Motif Reverse Complement Original Motif SGGTCACGKSRCCSCCHCCGSBGCCGCVGC CGGCYBCGCG SGGTCACGGCDCCGCSHCCGSBGCCGCVGC Direction: Forward Position #: 7 Overlap #: 10 Alignment: SGGTCACGKSRCCSCCHCCGSBGCCGCVGC ------CGGCYBCGCG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Reverse Complement Original Motif GCVGCGGCBSCGGDSGCGGDGCCGTGACCS SCGCGCGG SSSCGCGGCBSCGGDSGCGGDGCCGTGACCS Direction: Forward Position #: 2 Overlap #: 7 Alignment: -GCVGCGGCBSCGGDSGCGGDGCCGTGACCS SCGCGCGG----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Combined Motif Original Motif Original Motif SSSCGCGGCBSCGGDSGCGGDGCCGTGACCS GTCGCG SGBCGCGGCBSCGGDSGCGGDGCCGTGACCS Direction: Forward Position #: 2 Overlap #: 6 Alignment: SSSCGCGGCBSCGGDSGCGGDGCCGTGACCS -GTCGCG------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Original Motif SGGTCACGGCDCCGCSHCCGSBGCCGCGBCS HDWVAAAHAAAAAMAAAMWWWHBWA SGGTCACGGCDCCGCSHCCGSBGCCGCBBVBAAAHAAAAAMAAAMWWWHBWA Direction: Forward Position #: 28 Overlap #: 4 Alignment: SGGTCACGGCDCCGCSHCCGSBGCCGCGBCS--------------------- ---------------------------HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 13 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw wwAAATAATAtw Original Motif Original Motif HDAAATAATAHW HDAAATAATADD HDAAATAATAHW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATAHW HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Original Motif HDAAATAATAHW HDWVAAAHAAAAAMAAAMWWWHBWA HDAAAWAAWAWDAMAAAMWWWHBWA Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATAHW------------- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif TWVHWWWYTTTYTDWTWTTWTTTDH WTKTTTTTHWTTTTTTBT TWVHWWWBTTTTTDWTWTTTTBTDH Direction: Forward Position #: 6 Overlap #: 18 Alignment: TWVHWWWYTTTYTDWTWTTWTTTDH -----WTKTTTTTHWTTTTTTBT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif HDAVAAAAWAWDAAAAAVWWWHBWA ATKAAWTTTTRMAABAHHTW HDAVAAWDWAWWWHWAAAADAHHWA Direction: Forward Position #: 6 Overlap #: 20 Alignment: HDAVAAAAWAWDAAAAAVWWWHBWA -----ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif TWHHTDTTTTWHWWWTWDWTTBTDH WWHTTTTTCABAAWTTWA WWHTTDTTYWHAAWTTWAWTTBTDH Direction: Forward Position #: 1 Overlap #: 18 Alignment: TWHHTDTTTTWHWWWTWDWTTBTDH WWHTTTTTCABAAWTTWA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Reverse Complement Original Motif HDAVAAWTWAAWTTHWKAADAAHWW DBGTAAATAHD HDDTAAATAWHWTTHWKAADAAHWW Direction: Forward Position #: 1 Overlap #: 11 Alignment: HDAVAAWTWAAWTTHWKAADAAHWW DBGTAAATAHD-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wsTACwGTAsw Original Motif Original Motif HDDTAAATAWHWTTHWKAADAAHWW HVTACWGTABD HVTAMWRTADHWTTHWKAADAAHWW Direction: Forward Position #: 1 Overlap #: 11 Alignment: HDDTAAATAWHWTTHWKAADAAHWW HVTACWGTABD-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh Combined Motif Reverse Complement Reverse Complement WWHTTDTTYWHAAWHDTAMWRTAVH HCAGAATGTHD HHYAKAATGTHDWWHTTDTTYWHAA Direction: Backward Position #: 2 Overlap #: 11 Alignment: WWHTTDTTYWHAAWHDTAMWRTAVH -------------HCAGAATGTHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 14 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb TFM12 Original Motif Original Motif BCCGCCCCGCCCCBB CYYCBBCYYYTCCHCCTYYY CYBCVGCCCCGCCCCBBYYY Direction: Forward Position #: 3 Overlap #: 15 Alignment: --BCCGCCCCGCCCCBB--- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Original Motif KKKVBGGGGCGGGGCVGBMG RGRGGAGRRGGHGGDG RGRGRDGGGGSBGGGSVGBMG Direction: Forward Position #: 2 Overlap #: 15 Alignment: -KKKVBGGGGCGGGGCVGBMG RGRGGAGRRGGHGGDG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Reverse Complement RGRGRDGGGGSBGGGSVGBMG BBGGGGCGGGGCVD RGRGDVGGGGCGGGGCVGBMG Direction: Forward Position #: 5 Overlap #: 14 Alignment: RGRGRDGGGGSBGGGSVGBMG ----BBGGGGCGGGGCVD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Original Motif RGRGDVGGGGCGGGGCVGBMG GGMGGRGGCGGVGC GGVGGVGGSGSGGSGCVGBMG Direction: Forward Position #: 1 Overlap #: 14 Alignment: RGRGDVGGGGCGGGGCVGBMG GGMGGRGGCGGVGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Reverse Complement Original Motif CYBCVGCSCCSCSCCVCCBCC SGGTCACGTGACCS CYBBSGYCMCGYGMCCSCBCC Direction: Forward Position #: 4 Overlap #: 14 Alignment: CYBCVGCSCCSCSCCVCCBCC ---SGGTCACGTGACCS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Reverse Complement Original Motif GGVGSGGYCMCGYGMCSBBMG CGGVGCCGCVGC GGVGVGGHSCCGCGVCSBBMG Direction: Forward Position #: 5 Overlap #: 12 Alignment: GGVGSGGYCMCGYGMCSBBMG ----CGGVGCCGCVGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Original Motif Reverse Complement GGVGVGGHSCCGCGVCSBBMG CGCGBMGCCG SGVGBRGCCSCGCGVCSBBMG Direction: Forward Position #: 1 Overlap #: 10 Alignment: GGVGVGGHSCCGCGVCSBBMG CGCGBMGCCG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Reverse Complement Reverse Complement CYBBSGVCGCGSGGCMBCVCS CCGCGCGS CCGCGSSSGCGSGGCMBCVCS Direction: Forward Position #: 1 Overlap #: 8 Alignment: CYBBSGVCGCGSGGCMBCVCS CCGCGCGS------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW1 Reverse Complement Reverse Complement SGVGBRGCCSCGCSSSCGCGG CGCGAC CGCGVSGCCSCGCSSSCGCGG Direction: Forward Position #: 1 Overlap #: 6 Alignment: SGVGBRGCCSCGCSSSCGCGG CGCGAC--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 15 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr tkAAATAATAtw Reverse Complement Reverse Complement MBATTGGCTGH WHTATTATTTDH WVTATTRKYTVH Direction: Forward Position #: 2 Overlap #: 11 Alignment: -MBATTGGCTGH WHTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Reverse Complement HVAKYMAATABW HCAGAATGTHD HCAGAAWRTMDW Direction: Forward Position #: 1 Overlap #: 11 Alignment: HVAKYMAATABW HCAGAATGTHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Original Motif HCAGAAWRTMDW HDAAATAATADD HHARAWAATADW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HCAGAAWRTMDW HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Reverse Complement Reverse Complement WDTATTWTMTDH GBTGCAGGTGB WDTATTWDHTGCAGGTGB Direction: Forward Position #: 8 Overlap #: 5 Alignment: WDTATTWTMTDH------ -------GBTGCAGGTGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif WDTATTWDHTGCAGGTGB GGMGGRGGCGGVGC WDTATTWDHTGCAGGTGGRGGCGGVGC Direction: Forward Position #: 14 Overlap #: 5 Alignment: WDTATTWDHTGCAGGTGB--------- -------------GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Reverse Complement WDTATTWDHTGCAGGTGGRGGCGGVGC TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWHTWTTHTHTKYAKKTVDDGGCGGVGC Direction: Forward Position #: 6 Overlap #: 20 Alignment: -----WDTATTWDHTGCAGGTGGRGGCGGVGC TWVHWWWYTTTYTTTTTHTTTVWBH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Original Motif Reverse Complement TWVHWWHTWTTHTHTKYAKKTVDDGGCGGVGC DHTATTTACBD TWVHHTATWTWHBHTKYAKKTVDDGGCGGVGC Direction: Forward Position #: 4 Overlap #: 11 Alignment: TWVHWWHTWTTHTHTKYAKKTVDDGGCGGVGC ---DHTATTTACBD------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Reverse Complement Reverse Complement GCVCCGCCHDVARYTMRAHVDWAWATAHHBWA CGCGBMGCCG CGCGCCGCCGDVARYTMRAHVDWAWATAHHBWA Direction: Forward Position #: 2 Overlap #: 9 Alignment: -GCVCCGCCHDVARYTMRAHVDWAWATAHHBWA CGCGBMGCCG----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif CGCGCCGCCGDVARYTMRAHVDWAWATAHHBWA RGRGGAGRRGGHGGDG CGCGCVGMSGRVRRGBHRRDGDWAWATAHHBWA Direction: Forward Position #: 6 Overlap #: 16 Alignment: CGCGCCGCCGDVARYTMRAHVDWAWATAHHBWA -----RGRGGAGRRGGHGGDG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Reverse Complement CGCGCVGMSGRVRRGBHRRDGDWAWATAHHBWA GCVGCGGCBCCG SSCGCGGCBSMVRRGBHRRDGDWAWATAHHBWA Direction: Forward Position #: 1 Overlap #: 12 Alignment: CGCGCVGMSGRVRRGBHRRDGDWAWATAHHBWA GCVGCGGCBCCG--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 16 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc wsTACwGTAsw Original Motif Reverse Complement BCACCTGCABC DBTACWGTAVH DBWMCTGYAVH Direction: Backward Position #: 1 Overlap #: 11 Alignment: BCACCTGCABC DBTACWGTAVH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Original Motif DVTKCAGYWBD DHACATTCTGH DHACATTCWGYWBD Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---DVTKCAGYWBD DHACATTCTGH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 17 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw tkAAATAATAtw Original Motif Original Motif HDAAATAATADD HDAAATAATAHW HDAAATAATAHW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATADD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif WHTATTATTTDH WTKTTTTTHWTTTTTTBT WHTWTTWTTTDHTTTTTTBT Direction: Forward Position #: 3 Overlap #: 10 Alignment: WHTATTATTTDH-------- --WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Original Motif ABAAAAAAHDAAAWAAWAHW HDWVAAAHAAAAAMAAAMWWWHBWA WDAAAAAAADAAAHAAWAHWWHBWA Direction: Forward Position #: 1 Overlap #: 20 Alignment: ABAAAAAAHDAAAWAAWAHW----- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Reverse Complement TWVHWWHTWTTHTTTDTTTTTTTHW WAHHTVTTYKAAAAWTTRAT WAHHTDHTTDWHAWTWTDWTTTTTTTTHW Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----TWVHWWHTWTTHTTTDTTTTTTTHW WAHHTVTTYKAAAAWTTRAT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif WAHHTDHTTDWHAWTWTDWTTTTTTTTHW WWHTTTTTCABAAWTTWA WWHTTDTTYWHAAWTTTAWTTTTTTTTHW Direction: Forward Position #: 1 Overlap #: 18 Alignment: WAHHTDHTTDWHAWTWTDWTTTTTTTTHW WWHTTTTTCABAAWTTWA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Original Motif Original Motif WWHTTDTTYWHAAWTTTAWTTTTTTTTHW DBGTAAATAHD WWHTTDHHBTAAATWWWAWTTTTTTTTHW Direction: Forward Position #: 7 Overlap #: 11 Alignment: WWHTTDTTYWHAAWTTTAWTTTTTTTTHW ------DBGTAAATAHD------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Reverse Complement WDAAAAAAAAWTWWWATTTABHHDAAHWW HCAGAATGTHD HBAGAAWRTHDTWWWATTTABHHDAAHWW Direction: Forward Position #: 1 Overlap #: 11 Alignment: WDAAAAAAAAWTWWWATTTABHHDAAHWW HCAGAATGTHD------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw Combined Motif Original Motif Original Motif HBAGAAWRTHDTWWWATTTABHHDAAHWW HVTACWGTABD HHVKAMWGTADDWWWATTTABHHDAAHWW Direction: Forward Position #: 2 Overlap #: 11 Alignment: HBAGAAWRTHDTWWWATTTABHHDAAHWW -HVTACWGTABD----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Original Motif Reverse Complement HHVKAMWGTADDWWWATTTABHHDAAHWW MBATTGGCTGH HHVKAMWGTADDWWWATTTABHHDAMHATTGGCTGH Direction: Forward Position #: 26 Overlap #: 4 Alignment: HHVKAMWGTADDWWWATTTABHHDAAHWW------- -------------------------MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Original Motif DCAGCCAATHYTDHHBTAAATWWWDHTACWRTRBDH CYYCBBCYYYTCCHCCTYYY CYBCAGCCMHTCYTBYHBYHAATWWWDHTACWRTRBDH Direction: Forward Position #: 3 Overlap #: 18 Alignment: --DCAGCCAATHYTDHHBTAAATWWWDHTACWRTRBDH CYYCBBCYYYTCCHCCTYYY------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 18 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs csGCCCCGCCCCsc Original Motif Reverse Complement SGGTCACGTGACCS BBGGGGCGGGGCVD BSGKSRCGKGRCSV Direction: Forward Position #: 1 Overlap #: 14 Alignment: SGGTCACGTGACCS BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Reverse Complement BSGKSRCGKGRCSV BBGGGGCGGGGCGGB BSGGGGCGGGGCSBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BSGKSRCGKGRCSV- BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Reverse Complement Reverse Complement BBSGCCCCGCCCCSB GCVCCGCCMCCYCC SCVSCSCCGCCYCCB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBSGCCCCGCCCCSB GCVCCGCCMCCYCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF1 Original Motif Reverse Complement SCVSCSCCGCCYCCB GCVGCGGCBCCG GCVGCGSCBCCBCCB Direction: Forward Position #: 1 Overlap #: 12 Alignment: SCVSCSCCGCCYCCB GCVGCGGCBCCG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Original Motif GCVGCGSCBCCBCCB BCACCTGCABC BCACCKGCACCBCCB Direction: Forward Position #: 1 Overlap #: 11 Alignment: GCVGCGSCBCCBCCB BCACCTGCABC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Reverse Complement Original Motif BGGBGGTGCRGGTGB CGGCYBCGCG CGGCBBYGCRGGTGB Direction: Forward Position #: 1 Overlap #: 10 Alignment: BGGBGGTGCRGGTGB CGGCYBCGCG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement CGGCBBYGCRGGTGB KKKAGGDGGAKKMGBBGKMG CGGBKVBGBGGVKGHGBBGKMG Direction: Forward Position #: 3 Overlap #: 13 Alignment: CGGCBBYGCRGGTGB------- --KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Combined Motif Original Motif Reverse Complement CGGBKVBGBGGVKGHGBBGKMG CGCGAC CSGCGVCGBGGVKGHGBBGKMG Direction: Forward Position #: 2 Overlap #: 6 Alignment: CGGBKVBGBGGVKGHGBBGKMG -CGCGAC--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif CSGCGVCGBGGVKGHGBBGKMG RGRGGAGRRGGHGGDG CSGCGRVGGRGRDGSGGVGGMG Direction: Forward Position #: 5 Overlap #: 16 Alignment: CSGCGVCGBGGVKGHGBBGKMG ----RGRGGAGRRGGHGGDG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Original Motif Original Motif CSGCGRVGGRGRDGSGGVGGMG SCGCGCGG SCGCGCGGGRGRDGSGGVGGMG Direction: Forward Position #: 1 Overlap #: 8 Alignment: CSGCGRVGGRGRDGSGGVGGMG SCGCGCGG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 19 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw kcACCTGCAgc Original Motif Reverse Complement HVTACWGTABD GBTGCAGGTGB DVTRCAGKWBH Direction: Backward Position #: 1 Overlap #: 11 Alignment: HVTACWGTABD GBTGCAGGTGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Reverse Complement DVTRCAGKWBH DDTATTATTTDH DVTAYWRTWDDH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DVTRCAGKWBH- DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Reverse Complement Original Motif HDDWAMWKTAVD HDAAATAATAHW HDDWAAATWATAHW Direction: Forward Position #: 3 Overlap #: 10 Alignment: HDDWAMWKTAVD-- --HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Original Motif Original Motif HDDWAAATWATAHW DBGTAAATAHD HHDTAAATAADAHW Direction: Forward Position #: 1 Overlap #: 11 Alignment: HDDWAAATWATAHW DBGTAAATAHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Reverse Complement WHTDTTATTTAHHH TWAAWTTVTGAAAAAHWW TWWATTWDTKAHDWAHWW Direction: Forward Position #: 1 Overlap #: 14 Alignment: WHTDTTATTTAHHH---- TWAAWTTVTGAAAAAHWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif TWWATTWDTKAHDWAHWW ATKAAWTTTTRMAABAHHTW TWWATTWWWTWHWRAAAWAHHTW Direction: Forward Position #: 4 Overlap #: 15 Alignment: TWWATTWDTKAHDWAHWW----- ---ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Reverse Complement WAHHTWTTTKWHWAWWWAATWWA TWVHWWWYTTTYTTTTTHTTTVWBH WAHHTWHHTWWHWWTHTDWTWHWTTVWBH Direction: Forward Position #: 5 Overlap #: 19 Alignment: WAHHTWTTTKWHWAWWWAATWWA------ ----TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Reverse Complement HDWVAAWHWAWDAHAWWHWWAHHWAHHTW HCAGAATGTHD HHAGAATGTHWDAHAWWHWWAHHWAHHTW Direction: Forward Position #: 1 Overlap #: 11 Alignment: HDWVAAWHWAWDAHAWWHWWAHHWAHHTW HCAGAATGTHD------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif WAHHTWHHTWWHWWTHTDWHACATTCTDH WTKTTTTTHWTTTTTTBT WAHHTWTDTTTTTDTTTWTTWBWTTCTDH Direction: Forward Position #: 6 Overlap #: 18 Alignment: WAHHTWHHTWWHWWTHTDWHACATTCTDH -----WTKTTTTTHWTTTTTTBT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Original Motif WAHHTWTDTTTTTDTTTWTTWBWTTCTDH CYYCBBCYYYTCCHCCTYYY CWHYBKYHYTTYYHBYTTHYTWBWTTCTDH Direction: Forward Position #: 2 Overlap #: 19 Alignment: -WAHHTWTDTTTTTDTTTWTTWBWTTCTDH CYYCBBCYYYTCCHCCTYYY---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 20 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh TFM3 Reverse Complement Original Motif HCAGAATGTHD WWHTTTTTCABAAWTTWA AAWTTWAWHAKWWTKYWD Direction: Backward Position #: 8 Overlap #: 11 Alignment: HCAGAATGTHD------- WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Original Motif Original Motif AAWTTWAWHAKWWTKYWD BCACCTGCABC AAWTTWAWHAKWWTDYACCTGCABC Direction: Forward Position #: 15 Overlap #: 4 Alignment: AAWTTWAWHAKWWTKYWD------- --------------BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Reverse Complement AAWTTWAWHAKWWTDYACCTGCABC DDTATTATTTDH AAWTWWWATWRWWTDHACCTGCABC Direction: Forward Position #: 5 Overlap #: 12 Alignment: AAWTTWAWHAKWWTDYACCTGCABC ----DDTATTATTTDH--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement AAWTWWWATWRWWTDHACCTGCABC TWVHWWWYTTTYTTTTTHTTTVWBH WADHWWWHTTTTTTDTWBYTKCABH Direction: Forward Position #: 1 Overlap #: 25 Alignment: AAWTWWWATWRWWTDHACCTGCABC TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Reverse Complement WADHWWWHTTTTTTDTWBYTKCABH WAHHTVTTYKAAAAWTTRAT WAHHTAHTTDWHWWWTTDWTWBYTKCABH Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----WADHWWWHTTTTTTDTWBYTKCABH WAHHTVTTYKAAAAWTTRAT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Reverse Complement Original Motif DBTGYAKBWAWDAAWWWHWDAAHTAHHTW HDAAATAATAHW DBTGYADDWAWWAATATWWDAAHTAHHTW Direction: Forward Position #: 7 Overlap #: 12 Alignment: DBTGYAKBWAWDAAWWWHWDAAHTAHHTW ------HDAAATAATAHW----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Reverse Complement Original Motif WAHHTAHTTDWWATATTWWTWHDTKCABH DCAGCCAATVR WAHHTAHTTDWWATATTWWTWHDTKCAGCCAATVR Direction: Forward Position #: 25 Overlap #: 5 Alignment: WAHHTAHTTDWWATATTWWTWHDTKCABH------ ------------------------DCAGCCAATVR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif WAHHTAHTTDWWATATTWWTWHDTKCAGCCAATVR WTKTTTTTHWTTTTTTBT WAHHTWTTTTTDDWWTTWTTTBDTKCAGCCAATVR Direction: Forward Position #: 6 Overlap #: 18 Alignment: WAHHTAHTTDWWATATTWWTWHDTKCAGCCAATVR -----WTKTTTTTHWTTTTTTBT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw Combined Motif Reverse Complement Original Motif MBATTGGCTGYADBAAAWAAWWDDAAAAAWAHHTW HVTACWGTABD MBATTGGCTGYADBAAAWAAWWDDAAAAAWAHHTACWGTABD Direction: Forward Position #: 32 Overlap #: 4 Alignment: MBATTGGCTGYADBAAAWAAWWDDAAAAAWAHHTW------- -------------------------------HVTACWGTABD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif DBTACWGTADHTWTTTTTDDWWTTWTTTBDTKCAGCCAATBR CYYCBBCYYYTCCHCCTYYY DBTACWGYABYTHYTYYHBHTHYYWTTTBDTKCAGCCAATBR Direction: Forward Position #: 5 Overlap #: 20 Alignment: DBTACWGTADHTWTTTTTDDWWTTWTTTBDTKCAGCCAATBR ----CYYCBBCYYYTCCHCCTYYY------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 21 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww tkAAATAATAtw Original Motif Original Motif DBGTAAATAHD HDAAATAATAHW DHRWWAATAHDH Direction: Backward Position #: 1 Overlap #: 11 Alignment: -DBGTAAATAHD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Reverse Complement DHRWWAATAHDH DDTATTATTTDH DHTWWWATWTDH Direction: Forward Position #: 1 Overlap #: 12 Alignment: DHRWWAATAHDH DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement DHTWWWATWTDH TWVHWWWYTTTYTTTTTHTTTVWBH DHTWDWATWTWTTYTTTTTHTTTVWBH Direction: Forward Position #: 3 Overlap #: 10 Alignment: DHTWWWATWTDH--------------- --TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif DHTWDWATWTWTTYTTTTTHTTTVWBH WTKTTTTTHWTTTTTTBT DHTWDWWTWTTTTHTTTTTTTTTVWBH Direction: Forward Position #: 6 Overlap #: 18 Alignment: DHTWDWATWTWTTYTTTTTHTTTVWBH -----WTKTTTTTHWTTTTTTBT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif DHTWDWWTWTTTTHTTTTTTTTTVWBH WWHTTTTTCABAAWTTWA DHTWDWWDTTTTTCWTWWWTTTWVWBH Direction: Forward Position #: 6 Overlap #: 18 Alignment: DHTWDWWTWTTTTHTTTTTTTTTVWBH -----WWHTTTTTCABAAWTTWA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Reverse Complement HDWVWAAAWWWAWGAAAAADWWDWAHD WAHHTVTTYKAAAAWTTRAT WAHHTVTWWDAWAAWDWAAWADWWDWAHD Direction: Forward Position #: 3 Overlap #: 18 Alignment: --HDWVWAAAWWWAWGAAAAADWWDWAHD WAHHTVTTYKAAAAWTTRAT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw Combined Motif Reverse Complement Original Motif DHTWDWWDTWTTWDWTTWTDWWABAHHTW HVTACWGTABD DHBTACWGTABDWDWTTWTDWWABAHHTW Direction: Forward Position #: 2 Overlap #: 11 Alignment: DHTWDWWDTWTTWDWTTWTDWWABAHHTW -HVTACWGTABD----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Original Motif Reverse Complement DHBTACWGTABDWDWTTWTDWWABAHHTW MBATTGGCTGH DHBTACWGTABDWDWTTWTDWWABVHATTGGCTGH Direction: Forward Position #: 25 Overlap #: 5 Alignment: DHBTACWGTABDWDWTTWTDWWABAHHTW------ ------------------------MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Original Motif DHBTACWGTABDWDWTTWTDWWABVHATTGGCTGH CYYCBBCYYYTCCHCCTYYY CHHBDHCWBTHYHHVHTTYYDWWABVHATTGGCTGH Direction: Forward Position #: 2 Overlap #: 19 Alignment: -DHBTACWGTABDWDWTTWTDWWABVHATTGGCTGH CYYCBBCYYYTCCHCCTYYY---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement CHHBDHCWBTHYHHVHTTYYDWWABVHATTGGCTGH CHCCBCCKMCTCCKCM CHHBDHCCHYMBCCBMHTCCKHMABVHATTGGCTGH Direction: Forward Position #: 8 Overlap #: 16 Alignment: CHHBDHCWBTHYHHVHTTYYDWWABVHATTGGCTGH -------CHCCBCCKMCTCCKCM------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-20-2016 13:21:41 Runtime: 601.6 seconds MOTIFSIM is written by Ngoc Tam L. 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