**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.1 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Phylogenetic tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # W-ChIPMotifs_DM230.txt 11 1 RSAT_peak-motifs_DM230.txt 10 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ************************************************************ Combined Motifs for Top Global Significant Motif ID 1 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 sSGTCACGTGACSs Original Motif Original Motif GTCGCG SGGTCACGTGACCS TGACCSGTCRCGSG Direction: Backward Position #: 7 Overlap #: 6 Alignment: --GTCGCG------ SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Original Motif TGACCSGTCRCGSG HVGCCCCGCCCCBB HTGMCCCGYCMCGBG Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TGACCSGTCRCGSG HVGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Reverse Complement CBCGRGKCGGGRCAD BBGGGGCGGGGCGGB CBBGGGGSSGGGSMGGB Direction: Forward Position #: 3 Overlap #: 13 Alignment: CBCGRGKCGGGRCAD-- --BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Reverse Complement Original Motif BCCRSCCCSSCCCCBBG BCACCTGCABC BCCDSMCCKGCMSCBBG Direction: Forward Position #: 4 Overlap #: 11 Alignment: BCCRSCCCSSCCCCBBG ---BCACCTGCABC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 3 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 csGCCCCGCCCCsc Original Motif Original Motif CGGCYBCGCG HVGCCCCGCCCCBB CCBBCGGCCCCGCS Direction: Backward Position #: 5 Overlap #: 10 Alignment: CGGCYBCGCG---- HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Original Motif CCBBCGGCCCCGCS BCCGCCCCGCCCCBB CCSGCSSCSCCSCSB Direction: Forward Position #: 1 Overlap #: 14 Alignment: CCBBCGGCCCCGCS- BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Original Motif Reverse Complement CCSGCSSCSCCSCSB SGGTCACGTGACCS CCSGYCMCGYSVCSB Direction: Forward Position #: 2 Overlap #: 14 Alignment: CCSGCSSCSCCSCSB -SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Reverse Complement Reverse Complement BSGBSMCGYGMCSGG GBTGCAGGTGB BSKGCASGTGHCSGG Direction: Forward Position #: 1 Overlap #: 11 Alignment: BSGBSMCGYGMCSGG GBTGCAGGTGB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Reverse Complement Original Motif CCSGDCACSTGCRSB DCAGCCAATVR CCSGDCACSTGCAGCCAATVR Direction: Forward Position #: 11 Overlap #: 5 Alignment: CCSGDCACSTGCRSB------ ----------DCAGCCAATVR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 17 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw TFM1 Original Motif Reverse Complement HDAAATAATADD ABAAAAAAWHAAAAARAW ABAAAAAAAHAWAAWAWW Direction: Forward Position #: 7 Overlap #: 12 Alignment: ------HDAAATAATADD ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Reverse Complement WWTWTTWTHTTTTTTTBT TWVHWWWYTTTYTTTTTHTTTVWBH WWTWTTWTWWTTTTTTBTTTHTTTVWBH Direction: Forward Position #: 4 Overlap #: 15 Alignment: WWTWTTWTHTTTTTTTBT---------- ---TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Reverse Complement WWTWTTWTWWTTTTTTBTTTHTTTVWBH WAHHTVTTYKAAAAWTTRAT WWTWTTWWHTTHTTTKWWWWWTTTVTBH Direction: Forward Position #: 7 Overlap #: 20 Alignment: WWTWTTWTWWTTTTTTBTTTHTTTVWBH ------WAHHTVTTYKAAAAWTTRAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif WWTWTTWWHTTHTTTKWWWWWTTTVTBH WWHTTTTTCABAAWTTWA WWTWTTWWHTTTTTYWHAAWTTTWVTBH Direction: Forward Position #: 7 Overlap #: 18 Alignment: WWTWTTWWHTTHTTTKWWWWWTTTVTBH ------WWHTTTTTCABAAWTTWA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif WWTWTTWWHTTTTTYWHAAWTTTWVTBH CYYCBBCYYYTCCHCCTYYY WWTCTBHDBYTYYTCHHHHWYTYWVTBH Direction: Forward Position #: 4 Overlap #: 20 Alignment: WWTWTTWWHTTTTTYWHAAWTTTWVTBH ---CYYCBBCYYYTCCHCCTYYY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 13 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw TFM11 Reverse Complement Reverse Complement WHTATTATTTDH TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWWYTTTHHTWTTWTTTVWBH Direction: Forward Position #: 12 Overlap #: 12 Alignment: -----------WHTATTATTTDH-- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif TWVHWWWYTTTHHTWTTWTTTVWBH WTKTTTTTHWTTTTTTBT TWVHWWWBTTTTTDWTTWTTTBWBH Direction: Forward Position #: 6 Overlap #: 18 Alignment: TWVHWWWYTTTHHTWTTWTTTVWBH -----WTKTTTTTHWTTTTTTBT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif HDWBAAAWAAWDAAAAAVWWWHBWA ATKAAWTTTTRMAABAHHTW HDWBAAWDAAWWWHWAAAADAHHWA Direction: Forward Position #: 6 Overlap #: 20 Alignment: HDWBAAAWAAWDAAAAAVWWWHBWA -----ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Original Motif TWHHTDTTTTWHWWWTTDWTTBWBH WWHTTTTTCABAAWTTWA WWWTWTWTYWBWAWWWTWDWTTBWBH Direction: Forward Position #: 2 Overlap #: 17 Alignment: -TWHHTDTTTTWHWWWTTDWTTBWBH WWHTTTTTCABAAWTTWA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif WWWTWTWTYWBWAWWWTWDWTTBWBH CYYCBBCYYYTCCHCCTYYY YWHYHKYYYHTMHHHYTHHHTTBWBH Direction: Forward Position #: 1 Overlap #: 20 Alignment: WWWTWTWTYWBWAWWWTWDWTTBWBH CYYCBBCYYYTCCHCCTYYY------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 2 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 csGCCCCGCCCCsc Original Motif Reverse Complement SCGCGCGG BBGGGGCGGGGCVD BBSGSGCGGGGCVD Direction: Forward Position #: 2 Overlap #: 8 Alignment: -SCGCGCGG----- BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Reverse Complement BBSGSGCGGGGCVD BBGGGGCGGGGCGGB BBGGGGCGGGGCGGB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBSGSGCGGGGCVD- BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Original Motif BBGGGGCGGGGCGGB SGGTCACGTGACCS BSGKSRCGKGRCSVB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBGGGGCGGGGCGGB SGGTCACGTGACCS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Reverse Complement BSGKSRCGKGRCSVB GBTGCAGGTGB BSKGCASGTGVCSVB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BSGKSRCGKGRCSVB GBTGCAGGTGB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Reverse Complement Original Motif BVSGVCACSTGCRSB DCAGCCAATVR BVSGVCACSTGCAGCCAATVR Direction: Forward Position #: 11 Overlap #: 5 Alignment: BVSGVCACSTGCRSB------ ----------DCAGCCAATVR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 21 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww TFM11 Reverse Complement Reverse Complement DHTATTTACBD TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWWYTTTYTTTTTATTTAHBH Direction: Forward Position #: 15 Overlap #: 11 Alignment: --------------DHTATTTACBD TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif TWVHWWWYTTTYTTTTTATTTAHBH WTKTTTTTHWTTTTTTBT TWVHWWWBTTTTTDTTTWTTTVHBH Direction: Forward Position #: 6 Overlap #: 18 Alignment: TWVHWWWYTTTYTTTTTATTTAHBH -----WTKTTTTTHWTTTTTTBT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Original Motif Reverse Complement TWVHWWWBTTTTTDTTTWTTTVHBH TWAAWTTVTGAAAAAHWW TWAAWTTBTKWDDWAWTWTTTVHBH Direction: Forward Position #: 1 Overlap #: 18 Alignment: TWVHWWWBTTTTTDTTTWTTTVHBH TWAAWTTVTGAAAAAHWW------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Reverse Complement TWAAWTTBTKWDDWAWTWTTTVHBH WAHHTVTTYKAAAAWTTRAT WAHHTDHWTTWHWDWWWDATTWTTTVHBH Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----TWAAWTTBTKWDDWAWTWTTTVHBH WAHHTVTTYKAAAAWTTRAT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Original Motif WAHHTDHWTTWHWDWWWDATTWTTTVHBH CYYCBBCYYYTCCHCCTYYY CWHYBKHHYYTYHHBYTHHHTTWTTTVHBH Direction: Forward Position #: 2 Overlap #: 19 Alignment: -WAHHTDHWTTWHWDWWWDATTWTTTVHBH CYYCBBCYYYTCCHCCTYYY---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement CWHYBKHHYYTYHHBYTHHHTTWTTTVHBH CHCCBCCKMCTCCKCM CWHYBCHHCBBCBMVTHCBMHTWTTTVHBH Direction: Forward Position #: 6 Overlap #: 16 Alignment: CWHYBKHHYYTYHHBYTHHHTTWTTTVHBH -----CHCCBCCKMCTCCKCM--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Reverse Complement CWHYBCHHCBBCBMVTHCBMHTWTTTVHBH GCVGCGGCBCCG CWHYGCHVCBGCBCCBHCBMHTWTTTVHBH Direction: Forward Position #: 5 Overlap #: 12 Alignment: CWHYBCHHCBBCBMVTHCBMHTWTTTVHBH ----GCVGCGGCBCCG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 19 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw TFM3 Reverse Complement Original Motif DBTACWGTAVH WWHTTTTTCABAAWTTWA TTWATHTAYHRTARHWWH Direction: Backward Position #: 5 Overlap #: 11 Alignment: ---DBTACWGTAVH---- WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif TTWATHTAYHRTARHWWH ATKAAWTTTTRMAABAHHTW TTWATDWAHWTTWRAAAHAHHTW Direction: Forward Position #: 4 Overlap #: 15 Alignment: TTWATHTAYHRTARHWWH----- ---ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Original Motif TTWATDWAHWTTWRAAAHAHHTW HDWVAAAHAAAAAMAAAMWWWHBWA TTWATDWDAAWHAAAAAHAAAWWWWHBWA Direction: Forward Position #: 5 Overlap #: 19 Alignment: TTWATDWAHWTTWRAAAHAHHTW------ ----HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Reverse Complement Original Motif TWVHWWWWTTTHTTTTTHWTTDWDATWAA WTKTTTTTHWTTTTTTBT WTDDTTTTHTTTDTTTBTHWTTDWDATWAA Direction: Forward Position #: 2 Overlap #: 17 Alignment: -TWVHWWWWTTTHTTTTTHWTTDWDATWAA WTKTTTTTHWTTTTTTBT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif WTDDTTTTHTTTDTTTBTHWTTDWDATWAA CYYCBBCYYYTCCHCCTYYY WTDDTTYYHYBTYTYYBYHHYYDHHHTWAA Direction: Forward Position #: 7 Overlap #: 20 Alignment: WTDDTTTTHTTTDTTTBTHWTTDWDATWAA ------CYYCBBCYYYTCCHCCTYYY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement WTDDTTYYHYBTYTYYBYHHYYDHHHTWAA GCVCCGCCMCCYCC WTDDTBCHCCGYCHYBBCCHYYDHHHTWAA Direction: Forward Position #: 6 Overlap #: 14 Alignment: WTDDTTYYHYBTYTYYBYHHYYDHHHTWAA -----GCVCCGCCMCCYCC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif TTWADDHDMMHGGVBKDGKCGGDGVADDAW RGRGGAGRRGGHGGDG TTWADDVARVAGGRGGDGGBGGDGVADDAW Direction: Forward Position #: 6 Overlap #: 16 Alignment: TTWADDHDMMHGGVBKDGKCGGDGVADDAW -----RGRGGAGRRGGHGGDG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 16 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc TFF11 Reverse Complement Original Motif GBTGCAGGTGB GGMGGRGGCGGVGC VGCGSTGSAGGYGG Direction: Backward Position #: 4 Overlap #: 11 Alignment: GBTGCAGGTGB--- GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement VGCGSTGSAGGYGG KKKAGGDGGAKKMGBBGKMG VGBGBHGSDGGHGKMGBBGKMG Direction: Forward Position #: 3 Overlap #: 12 Alignment: VGCGSTGSAGGYGG-------- --KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Reverse Complement CYYCBBCYYCDCCDSCHBCBCV CHCCBCCKMCTCCKCM CYYCCBCCBCCYCVBCMBCVCV Direction: Forward Position #: 5 Overlap #: 16 Alignment: CYYCBBCYYCDCCDSCHBCBCV ----CHCCBCCKMCTCCKCM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF1 Reverse Complement Reverse Complement VGVGVRGVVGKGGBGGBGGKMG GCVGCGGCBCCG GSVGCGGCBSCGGBGGBGGKMG Direction: Forward Position #: 1 Overlap #: 12 Alignment: VGVGVRGVVGKGGBGGBGGKMG GCVGCGGCBCCG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Original Motif Reverse Complement GSVGCGGCBSCGGBGGBGGKMG CGCGBMGCCG SGCGBRGCCGCGGBGGBGGKMG Direction: Forward Position #: 1 Overlap #: 10 Alignment: GSVGCGGCBSCGGBGGBGGKMG CGCGBMGCCG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Combined Motif Reverse Complement Reverse Complement CYYCCBCCBCCGCGGCMBCGCS CGCGAC CYYCCGCSHCCGCGGCMBCGCS Direction: Forward Position #: 5 Overlap #: 6 Alignment: CYYCCBCCBCCGCGGCMBCGCS ----CGCGAC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Original Motif Reverse Complement CYYCCGCSHCCGCGGCMBCGCS CCGCGCGS CCSCSSSSHCCGCGGCMBCGCS Direction: Forward Position #: 1 Overlap #: 8 Alignment: CYYCCGCSHCCGCGGCMBCGCS CCGCGCGS-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 4 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 csGCCCCGCCCCsc Original Motif Original Motif CGGVGCCGCVGC HVGCCCCGCCCCBB CGGCSCCGCCSCBB Direction: Forward Position #: 1 Overlap #: 12 Alignment: CGGVGCCGCVGC-- HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Reverse Complement BBGSGGCGGSGCCG BBGGGGCGGGGCGGB BBGGGGCGGGGCSGB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBGSGGCGGSGCCG- BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Original Motif BBGGGGCGGGGCSGB SGGTCACGTGACCS BSGKSRCGKGRCSVB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBGGGGCGGGGCSGB SGGTCACGTGACCS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Reverse Complement BSGKSRCGKGRCSVB GBTGCAGGTGB BSKGCASGTGVCSVB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BSGKSRCGKGRCSVB GBTGCAGGTGB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Reverse Complement Original Motif BVSGBCACSTGCRSB DCAGCCAATVR BVSGBCACSTGCAGCCAATVR Direction: Forward Position #: 11 Overlap #: 5 Alignment: BVSGBCACSTGCRSB------ ----------DCAGCCAATVR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh Combined Motif Original Motif Original Motif BVSGBCACSTGCAGCCAATVR DHACATTCTGH BVSGDHACMTTCWGCCAATVR Direction: Forward Position #: 5 Overlap #: 11 Alignment: BVSGBCACSTGCAGCCAATVR ----DHACATTCTGH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Original Motif Original Motif BVSGDHACMTTCWGCCAATVR DBGTAAATAHD HVGKAMAYATDCWGCCAATVR Direction: Forward Position #: 1 Overlap #: 11 Alignment: BVSGDHACMTTCWGCCAATVR DBGTAAATAHD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 20 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh TFM3 Reverse Complement Original Motif HCAGAATGTHD WWHTTTTTCABAAWTTWA AAWTTWAWHAKWWTKYWD Direction: Backward Position #: 8 Overlap #: 11 Alignment: HCAGAATGTHD------- WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement AAWTTWAWHAKWWTKYWD TWVHWWWYTTTYTTTTTHTTTVWBH AAWTWHAWWWKWTTBTWTTTHTTTVWBH Direction: Forward Position #: 4 Overlap #: 15 Alignment: AAWTTWAWHAKWWTKYWD---------- ---TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Original Motif HDWVAAAHAAAWAVAAWRWWWTHWAWTT ATKAAWTTTTRMAABAHHTW ATDWDAWWHWAAAADAAWDWWWTHWAWTT Direction: Forward Position #: 2 Overlap #: 19 Alignment: -HDWVAAAHAAAWAVAAWRWWWTHWAWTT ATKAAWTTTTRMAABAHHTW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Original Motif Reverse Complement ATDWDAWWHWAAAADAAWDWWWTHWAWTT ABAAAAAAWHAAAAARAW ABAAWDAAAWWDAAAAAHAAWDWWWTHWAWTT Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---ATDWDAWWHWAAAADAAWDWWWTHWAWTT ABAAAAAAWHAAAAARAW-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif AAWTWHAWWWDWTTHTTTTTDWWTTTDWTTBT CYYCBBCYYYTCCHCCTYYY AAWTWHACHHHHBYHYYTYYHBHTYTHWTTBT Direction: Forward Position #: 8 Overlap #: 20 Alignment: AAWTWHAWWWDWTTHTTTTTDWWTTTDWTTBT -------CYYCBBCYYYTCCHCCTYYY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-20-2016 13:21:41 Runtime: 601.6 seconds MOTIFSIM is written by Ngoc Tam L. Tran