MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.1

INPUT

Input Parameters
Number of files: 2
Number of top significant motifs: 10
Number of best matches: 10
Similarity cutoff >= 0.75
Matching motif database: UniProbe Mus Musculus
Phylogenetic tree: Yes
Combined similar motifs: Yes
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
PScanChIP_DM05.txt 16 1
RSAT_peak-motifs_DM05.txt 17 2

RESULTS

Top 10 Significant Motifs - Global Matching (Highest to Lowest)

Dataset #: 1 Motif ID: 5 Motif name: ZEB1

Original motif     Consensus sequence: CACCTD Reverse complement motif     Consensus sequence: HAGGTG

Best Matches for Top Significant Motif ID 5 (Highest to Lowest)

Dataset #: 2
Motif ID: 21
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0349782

Alignment:
AMTGTGACACCACAGT
-------CACCTD---

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART


Dataset #: 2
Motif ID: 17
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0362768

Alignment:
TGTGGTGTCACAGTGCTCC
-HAGGTG------------

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA


Dataset #: 2
Motif ID: 27
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 12
Number of overlap: 6
Similarity score: 0.0409613

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
-----------HAGGTG-------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT


Dataset #: 2
Motif ID: 33
Motif name: srACyCCGAyr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0426002

Alignment:
KKTCGGKGTKS
--HAGGTG---

Original motif     Consensus sequence: SRACYCCGAYR Reverse complement motif     Consensus sequence: KKTCGGKGTKS


Dataset #: 2
Motif ID: 23
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0496179

Alignment:
TGGAGCACTGTGACAVCACAGTGG
-------------CACCTD-----

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA


Dataset #: 2
Motif ID: 26
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0538743

Alignment:
AGTGCTCCACTGTGDTG
-----------HAGGTG

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG


Dataset #: 2
Motif ID: 19
Motif name: atactttggc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0553034

Alignment:
ATACTTTGGC
-CACCTD---

Original motif     Consensus sequence: ATACTTTGGC Reverse complement motif     Consensus sequence: GCCAAAGTAT


Dataset #: 2
Motif ID: 22
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 19
Number of overlap: 6
Similarity score: 0.0564649

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
------------------CACCTD-

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG


Dataset #: 2
Motif ID: 24
Motif name: ssCCCCGCSssk
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0571854

Alignment:
SBCCCCGCCSBB
-----CACCTD-

Original motif     Consensus sequence: SBCCCCGCCSBB Reverse complement motif     Consensus sequence: BBSGGCGGGGBS


Dataset #: 2
Motif ID: 20
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.0594701

Alignment:
ABCACAGTGGAGCACTG
----HAGGTG-------

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG


Dataset #: 1 Motif ID: 6 Motif name: Mycn

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD

Best Matches for Top Significant Motif ID 6 (Highest to Lowest)

Dataset #: 2
Motif ID: 18
Motif name: sscCCCGCGcs
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0654819

Alignment:
BSCCCCGCGBS
-GCCACGTGSD

Original motif     Consensus sequence: BSCCCCGCGBS Reverse complement motif     Consensus sequence: SBCGCGGGGSB


Dataset #: 2
Motif ID: 24
Motif name: ssCCCCGCSssk
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0704988

Alignment:
BBSGGCGGGGBS
-HSCACGTGGC-

Original motif     Consensus sequence: SBCCCCGCCSBB Reverse complement motif     Consensus sequence: BBSGGCGGGGBS


Dataset #: 2
Motif ID: 22
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 10
Similarity score: 0.0883224

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
------GCCACGTGSD---------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG


Dataset #: 2
Motif ID: 20
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.0943014

Alignment:
ABCACAGTGGAGCACTG
-GCCACGTGSD------

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG


Dataset #: 2
Motif ID: 27
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.0949359

Alignment:
ACTGTGACACCACAGTGGAGCACT
---------GCCACGTGSD-----

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT


Dataset #: 2
Motif ID: 23
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0955115

Alignment:
TGGAGCACTGTGACAVCACAGTGG
--------------HSCACGTGGC

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA


Dataset #: 2
Motif ID: 26
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0959628

Alignment:
CAHCACAGTGGAGCACT
--GCCACGTGSD-----

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG


Dataset #: 2
Motif ID: 32
Motif name: gCGCGCsCgsG
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0989932

Alignment:
GCGCGCSCGCG
-HSCACGTGGC

Original motif     Consensus sequence: GCGCGCSCGCG Reverse complement motif     Consensus sequence: CGCGSGCGCGC


Dataset #: 2
Motif ID: 17
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0991692

Alignment:
GGAGCACTGTGACACCACA
---GCCACGTGSD------

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA


Dataset #: 2
Motif ID: 28
Motif name: ssGCkTGCssk
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.101333

Alignment:
YSSGCAYGCSS
HSCACGTGGC-

Original motif     Consensus sequence: SSGCKTGCSSK Reverse complement motif     Consensus sequence: YSSGCAYGCSS


Dataset #: 1 Motif ID: 8 Motif name: Myc

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV

Best Matches for Top Significant Motif ID 8 (Highest to Lowest)

Dataset #: 2
Motif ID: 18
Motif name: sscCCCGCGcs
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.064853

Alignment:
BSCCCCGCGBS
-DCCACGTGCV

Original motif     Consensus sequence: BSCCCCGCGBS Reverse complement motif     Consensus sequence: SBCGCGGGGSB


Dataset #: 2
Motif ID: 24
Motif name: ssCCCCGCSssk
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0728588

Alignment:
SBCCCCGCCSBB
-DCCACGTGCV-

Original motif     Consensus sequence: SBCCCCGCCSBB Reverse complement motif     Consensus sequence: BBSGGCGGGGBS


Dataset #: 2
Motif ID: 22
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.0888909

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
----------DCCACGTGCV-----

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG


Dataset #: 2
Motif ID: 20
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.0955234

Alignment:
ABCACAGTGGAGCACTG
-DCCACGTGCV------

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG


Dataset #: 2
Motif ID: 23
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 10
Similarity score: 0.0971125

Alignment:
TGGAGCACTGTGACAVCACAGTGG
----DCCACGTGCV----------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA


Dataset #: 2
Motif ID: 25
Motif name: wwCCAmAGTCmt
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0974038

Alignment:
VDGACTRTGGDD
-VGCACGTGGH-

Original motif     Consensus sequence: DDCCAMAGTCHB Reverse complement motif     Consensus sequence: VDGACTRTGGDD


Dataset #: 2
Motif ID: 26
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0979703

Alignment:
CAHCACAGTGGAGCACT
--DCCACGTGCV-----

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG


Dataset #: 2
Motif ID: 27
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.0980018

Alignment:
ACTGTGACACCACAGTGGAGCACT
---------DCCACGTGCV-----

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT


Dataset #: 2
Motif ID: 32
Motif name: gCGCGCsCgsG
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0989125

Alignment:
CGCGSGCGCGC
VGCACGTGGH-

Original motif     Consensus sequence: GCGCGCSCGCG Reverse complement motif     Consensus sequence: CGCGSGCGCGC


Dataset #: 2
Motif ID: 17
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.0993196

Alignment:
GGAGCACTGTGACACCACA
---DCCACGTGCV------

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA


Dataset #: 1 Motif ID: 11 Motif name: NR4A2

Original motif     Consensus sequence: AAGGTCAC Reverse complement motif     Consensus sequence: GTGACCTT

Best Matches for Top Significant Motif ID 11 (Highest to Lowest)

Dataset #: 2
Motif ID: 22
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0557243

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
------AAGGTCAC-----------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG


Dataset #: 2
Motif ID: 23
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.060729

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
-------AAGGTCAC---------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA


Dataset #: 2
Motif ID: 21
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0645146

Alignment:
ACTGTGGTGTCACART
-----AAGGTCAC---

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART


Dataset #: 2
Motif ID: 17
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0695512

Alignment:
TGTGGTGTCACAGTGCTCC
---AAGGTCAC--------

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA


Dataset #: 2
Motif ID: 27
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0709831

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
-------------AAGGTCAC---

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT


Dataset #: 2
Motif ID: 29
Motif name: cCGCGGrCACG
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0772292

Alignment:
CCGCGGRCACG
--AAGGTCAC-

Original motif     Consensus sequence: CCGCGGRCACG Reverse complement motif     Consensus sequence: CGTGKCCGCGG


Dataset #: 2
Motif ID: 25
Motif name: wwCCAmAGTCmt
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0788401

Alignment:
DDCCAMAGTCHB
----AAGGTCAC

Original motif     Consensus sequence: DDCCAMAGTCHB Reverse complement motif     Consensus sequence: VDGACTRTGGDD


Dataset #: 2
Motif ID: 20
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 8
Similarity score: 0.0864039

Alignment:
ABCACAGTGGAGCACTG
---------GTGACCTT

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG


Dataset #: 2
Motif ID: 28
Motif name: ssGCkTGCssk
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.568556

Alignment:
SSGCKTGCSSK-
----GTGACCTT

Original motif     Consensus sequence: SSGCKTGCSSK Reverse complement motif     Consensus sequence: YSSGCAYGCSS


Dataset #: 2
Motif ID: 26
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 11
Number of overlap: 7
Similarity score: 0.581814

Alignment:
CAHCACAGTGGAGCACT-
----------GTGACCTT

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG


Dataset #: 2 Motif ID: 25 Motif name: wwCCAmAGTCmt

Original motif     Consensus sequence: DDCCAMAGTCHB Reverse complement motif     Consensus sequence: VDGACTRTGGDD

Best Matches for Top Significant Motif ID 25 (Highest to Lowest)

Dataset #: 1
Motif ID: 1
Motif name: HNF4A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.032442

Alignment:
RGGBCAAAGKYCA
-DDCCAMAGTCHB

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK


Dataset #: 1
Motif ID: 7
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0391228

Alignment:
GGYGCTGTCCATGGTGCTGAA
---DDCCAMAGTCHB------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 1
Motif ID: 3
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 12
Similarity score: 0.0407304

Alignment:
VDBHMAGGTCACCCTGACCY
DDCCAMAGTCHB--------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 1
Motif ID: 10
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0463384

Alignment:
AAAGGTCAAAGGTCAAC
----DDCCAMAGTCHB-

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 1
Motif ID: 14
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0480406

Alignment:
TGRCCTKTGHCCKAB
--DDCCAMAGTCHB-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 1
Motif ID: 2
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0506507

Alignment:
TGAMCTTTGMMCYT
--VDGACTRTGGDD

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA


Dataset #: 1
Motif ID: 16
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 12
Similarity score: 0.0523578

Alignment:
BMSMGCCYMCTKSTGGMHM
DDCCAMAGTCHB-------

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM


Dataset #: 1
Motif ID: 9
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.0576723

Alignment:
VHRGGTCABDBTGMCCTB
---DDCCAMAGTCHB---

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV


Dataset #: 1
Motif ID: 4
Motif name: Esrrb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.525631

Alignment:
VBBYCAAGGTCA-
-DDCCAMAGTCHB

Original motif     Consensus sequence: VBBYCAAGGTCA Reverse complement motif     Consensus sequence: TGACCTTGMBBB


Dataset #: 1
Motif ID: 8
Motif name: Myc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 1.0578

Alignment:
--VGCACGTGGH
VDGACTRTGGDD

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV


Dataset #: 2 Motif ID: 28 Motif name: ssGCkTGCssk

Original motif     Consensus sequence: SSGCKTGCSSK Reverse complement motif     Consensus sequence: YSSGCAYGCSS

Best Matches for Top Significant Motif ID 28 (Highest to Lowest)

Dataset #: 1
Motif ID: 16
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 11
Similarity score: 0.0349439

Alignment:
YDRCCASYAGRKGGCRSYV
-------SSGCKTGCSSK-

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM


Dataset #: 1
Motif ID: 4
Motif name: Esrrb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0358701

Alignment:
VBBYCAAGGTCA
-YSSGCAYGCSS

Original motif     Consensus sequence: VBBYCAAGGTCA Reverse complement motif     Consensus sequence: TGACCTTGMBBB


Dataset #: 1
Motif ID: 9
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0379074

Alignment:
VHRGGTCABDBTGMCCTB
-----YSSGCAYGCSS--

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV


Dataset #: 1
Motif ID: 7
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 11
Similarity score: 0.0409322

Alignment:
TTCAGCACCATGGACAGCKCC
-YSSGCAYGCSS---------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 1
Motif ID: 14
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.041419

Alignment:
BTRGGDCARAGGKCA
--YSSGCAYGCSS--

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 1
Motif ID: 1
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0437981

Alignment:
RGGBCAAAGKYCA
--YSSGCAYGCSS

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK


Dataset #: 1
Motif ID: 6
Motif name: Mycn
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.53887

Alignment:
GCCACGTGSD-
SSGCKTGCSSK

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD


Dataset #: 1
Motif ID: 8
Motif name: Myc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.542915

Alignment:
DCCACGTGCV-
SSGCKTGCSSK

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV


Dataset #: 1
Motif ID: 10
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 8
Similarity score: 1.53583

Alignment:
---AAAGGTCAAAGGTCAAC
YSSGCAYGCSS---------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT


Dataset #: 1
Motif ID: 15
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 1.53704

Alignment:
---CCAGYYHVADCCRG
YSSGCAYGCSS------

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG


Dataset #: 2 Motif ID: 24 Motif name: ssCCCCGCSssk

Original motif     Consensus sequence: SBCCCCGCCSBB Reverse complement motif     Consensus sequence: BBSGGCGGGGBS

Best Matches for Top Significant Motif ID 24 (Highest to Lowest)

Dataset #: 1
Motif ID: 3
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.063076

Alignment:
MGGTCAGGGTGACCTRDBHV
-------BBSGGCGGGGBS-

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 1
Motif ID: 16
Motif name: CTCF
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0642087

Alignment:
YDRCCASYAGRKGGCRSYV
-BBSGGCGGGGBS------

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM


Dataset #: 1
Motif ID: 14
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0671548

Alignment:
TGRCCTKTGHCCKAB
-SBCCCCGCCSBB--

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 1
Motif ID: 9
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0734481

Alignment:
BAGGYCABHBTGACCKHV
-SBCCCCGCCSBB-----

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV


Dataset #: 1
Motif ID: 7
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 12
Similarity score: 0.0751084

Alignment:
TTCAGCACCATGGACAGCKCC
BBSGGCGGGGBS---------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 1
Motif ID: 4
Motif name: Esrrb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.571364

Alignment:
VBBYCAAGGTCA-
-BBSGGCGGGGBS

Original motif     Consensus sequence: VBBYCAAGGTCA Reverse complement motif     Consensus sequence: TGACCTTGMBBB


Dataset #: 1
Motif ID: 1
Motif name: HNF4A
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.573202

Alignment:
-TGMYCTTTGBCCK
SBCCCCGCCSBB--

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK


Dataset #: 1
Motif ID: 15
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 9
Similarity score: 1.54913

Alignment:
CKGGDTBDMMCTGG---
-----BBSGGCGGGGBS

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG


Dataset #: 1
Motif ID: 6
Motif name: Mycn
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 9
Similarity score: 1.57507

Alignment:
---HSCACGTGGC
SBCCCCGCCSBB-

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD


Dataset #: 1
Motif ID: 8
Motif name: Myc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 1.57737

Alignment:
VGCACGTGGH---
-BBSGGCGGGGBS

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV


Dataset #: 2 Motif ID: 29 Motif name: cCGCGGrCACG

Original motif     Consensus sequence: CCGCGGRCACG Reverse complement motif     Consensus sequence: CGTGKCCGCGG

Best Matches for Top Significant Motif ID 29 (Highest to Lowest)

Dataset #: 1
Motif ID: 7
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0484441

Alignment:
TTCAGCACCATGGACAGCKCC
-------CCGCGGRCACG---

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA


Dataset #: 1
Motif ID: 3
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0486581

Alignment:
MGGTCAGGGTGACCTRDBHV
-------CGTGKCCGCGG--

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV


Dataset #: 1
Motif ID: 16
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 11
Similarity score: 0.0588663

Alignment:
YDRCCASYAGRKGGCRSYV
-------CCGCGGRCACG-

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM


Dataset #: 1
Motif ID: 14
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0629476

Alignment:
TGRCCTKTGHCCKAB
---CGTGKCCGCGG-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB


Dataset #: 1
Motif ID: 9
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 10
Similarity score: 0.551597

Alignment:
BAGGYCABHBTGACCKHV-
--------CGTGKCCGCGG

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV


Dataset #: 1
Motif ID: 8
Motif name: Myc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 1.0488

Alignment:
VGCACGTGGH--
-CGTGKCCGCGG

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV


Dataset #: 1
Motif ID: 6
Motif name: Mycn
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 1.04892

Alignment:
HSCACGTGGC--
-CGTGKCCGCGG

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD


Dataset #: 1
Motif ID: 13
Motif name: MIZF
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 9
Similarity score: 1.04904

Alignment:
--BAACGTCCGC
CGTGKCCGCGG-

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV


Dataset #: 1
Motif ID: 4
Motif name: Esrrb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 9
Similarity score: 1.05291

Alignment:
VBBYCAAGGTCA--
---CCGCGGRCACG

Original motif     Consensus sequence: VBBYCAAGGTCA Reverse complement motif     Consensus sequence: TGACCTTGMBBB


Dataset #: 1
Motif ID: 1
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 1.55795

Alignment:
TGMYCTTTGBCCK---
-----CGTGKCCGCGG

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK


Dataset #: 1 Motif ID: 4 Motif name: Esrrb

Original motif     Consensus sequence: VBBYCAAGGTCA Reverse complement motif     Consensus sequence: TGACCTTGMBBB

Best Matches for Top Significant Motif ID 4 (Highest to Lowest)

Dataset #: 2
Motif ID: 17
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0772556

Alignment:
TGTGGTGTCACAGTGCTCC
-------TGACCTTGMBBB

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA


Dataset #: 2
Motif ID: 23
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 12
Number of overlap: 12
Similarity score: 0.0785385

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
-----------TGACCTTGMBBB-

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA


Dataset #: 2
Motif ID: 22
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 12
Similarity score: 0.0832722

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
---VBBYCAAGGTCA----------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG


Dataset #: 2
Motif ID: 25
Motif name: wwCCAmAGTCmt
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.558919

Alignment:
-DDCCAMAGTCHB
VBBYCAAGGTCA-

Original motif     Consensus sequence: DDCCAMAGTCHB Reverse complement motif     Consensus sequence: VDGACTRTGGDD


Dataset #: 2
Motif ID: 28
Motif name: ssGCkTGCssk
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.581406

Alignment:
-SSGCKTGCSSK
TGACCTTGMBBB

Original motif     Consensus sequence: SSGCKTGCSSK Reverse complement motif     Consensus sequence: YSSGCAYGCSS


Dataset #: 2
Motif ID: 24
Motif name: ssCCCCGCSssk
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.583683

Alignment:
-SBCCCCGCCSBB
TGACCTTGMBBB-

Original motif     Consensus sequence: SBCCCCGCCSBB Reverse complement motif     Consensus sequence: BBSGGCGGGGBS


Dataset #: 2
Motif ID: 27
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 15
Number of overlap: 10
Similarity score: 1.08683

Alignment:
AGTGCTCCACTGTGGTGTCACAGT--
--------------VBBYCAAGGTCA

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT


Dataset #: 2
Motif ID: 19
Motif name: atactttggc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 1.08726

Alignment:
--GCCAAAGTAT
VBBYCAAGGTCA

Original motif     Consensus sequence: ATACTTTGGC Reverse complement motif     Consensus sequence: GCCAAAGTAT


Dataset #: 2
Motif ID: 29
Motif name: cCGCGGrCACG
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 9
Similarity score: 1.57579

Alignment:
---CCGCGGRCACG
VBBYCAAGGTCA--

Original motif     Consensus sequence: CCGCGGRCACG Reverse complement motif     Consensus sequence: CGTGKCCGCGG


Dataset #: 2
Motif ID: 21
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 7
Similarity score: 2.57595

Alignment:
-----AMTGTGACACCACAGT
VBBYCAAGGTCA---------

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART


Dataset #: 1 Motif ID: 13 Motif name: MIZF

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV

Best Matches for Top Significant Motif ID 13 (Highest to Lowest)

Dataset #: 2
Motif ID: 32
Motif name: gCGCGCsCgsG
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0651598

Alignment:
GCGCGCSCGCG
BAACGTCCGC-

Original motif     Consensus sequence: GCGCGCSCGCG Reverse complement motif     Consensus sequence: CGCGSGCGCGC


Dataset #: 2
Motif ID: 19
Motif name: atactttggc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0803571

Alignment:
ATACTTTGGC
BAACGTCCGC

Original motif     Consensus sequence: ATACTTTGGC Reverse complement motif     Consensus sequence: GCCAAAGTAT


Dataset #: 2
Motif ID: 29
Motif name: cCGCGGrCACG
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 9
Similarity score: 0.560913

Alignment:
CCGCGGRCACG-
--GCGGACGTTV

Original motif     Consensus sequence: CCGCGGRCACG Reverse complement motif     Consensus sequence: CGTGKCCGCGG


Dataset #: 2
Motif ID: 31
Motif name: ctatacggacg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 9
Similarity score: 0.562302

Alignment:
-CGTCCGTATAG
GCGGACGTTV--

Original motif     Consensus sequence: CTATACGGACG Reverse complement motif     Consensus sequence: CGTCCGTATAG


Dataset #: 2
Motif ID: 25
Motif name: wwCCAmAGTCmt
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 9
Similarity score: 0.562428

Alignment:
DDCCAMAGTCHB-
---BAACGTCCGC

Original motif     Consensus sequence: DDCCAMAGTCHB Reverse complement motif     Consensus sequence: VDGACTRTGGDD


Dataset #: 2
Motif ID: 18
Motif name: sscCCCGCGcs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 1.06446

Alignment:
SBCGCGGGGSB--
---GCGGACGTTV

Original motif     Consensus sequence: BSCCCCGCGBS Reverse complement motif     Consensus sequence: SBCGCGGGGSB


Dataset #: 2
Motif ID: 24
Motif name: ssCCCCGCSssk
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 1.07197

Alignment:
BBSGGCGGGGBS--
----GCGGACGTTV

Original motif     Consensus sequence: SBCCCCGCCSBB Reverse complement motif     Consensus sequence: BBSGGCGGGGBS


Dataset #: 2
Motif ID: 33
Motif name: srACyCCGAyr
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 1.55

Alignment:
SRACYCCGAYR---
----GCGGACGTTV

Original motif     Consensus sequence: SRACYCCGAYR Reverse complement motif     Consensus sequence: KKTCGGKGTKS


Dataset #: 2
Motif ID: 27
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 18
Number of overlap: 7
Similarity score: 1.5706

Alignment:
---AGTGCTCCACTGTGGTGTCACAGT
BAACGTCCGC-----------------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT


Dataset #: 2
Motif ID: 26
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 11
Number of overlap: 7
Similarity score: 1.57176

Alignment:
CAHCACAGTGGAGCACT---
----------GCGGACGTTV

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG


Results created by MOTIFSIM on 11-20-2016 21:11:03
Runtime: 725.149 seconds

MOTIFSIM is written by Ngoc Tam L. Tran
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