**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.1 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Phylogenetic tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # PScanChIP_DM05.txt 16 1 RSAT_peak-motifs_DM05.txt 17 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** *************************************************************** Combined Motifs for Top Best Match Motif ID 1 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A PPARGRXRA Reverse Complement Reverse Complement TGMYCTTTGBCCK TGRCCTKTGHCCKAB TGACCTTTGBCCKAB Direction: Backward Position #: 3 Overlap #: 13 Alignment: TGMYCTTTGBCCK-- TGRCCTKTGHCCKAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Original Motif TGACCTTTGBCCKAB TGAMCTTTGMMCYT TGACCTTTGVMCBHB Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGACCTTTGBCCKAB TGAMCTTTGMMCYT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif BHVGRVCAAAGGTCA AAAGGTCAAAGGTCAAC VAAGGTCAAAGGTCAAC Direction: Forward Position #: 1 Overlap #: 15 Alignment: BHVGRVCAAAGGTCA-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement GTTGACCTTTGACCTTB AGTGSWSCACTGTGAMAMCACAGTG AGTGBTGMMCTKTGACMHYACAGTG Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---GTTGACCTTTGACCTTB----- AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Original Motif AGTGBTGMMCTKTGACMHYACAGTG TGGAGCACTGTGACAVCACAGTGG AGTGGWGCACTGTGACAHCACAGTGG Direction: Forward Position #: 3 Overlap #: 23 Alignment: AGTGBTGMMCTKTGACMHYACAGTG- --TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement AGTGGWGCACTGTGACAHCACAGTGG BAGGYCABHBTGACCKHV AGTRGDBCACTGTGACMBHDCAGTGG Direction: Forward Position #: 3 Overlap #: 18 Alignment: AGTGGWGCACTGTGACAHCACAGTGG --BAGGYCABHBTGACCKHV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement AGTRGDBCACTGTGACMBHDCAGTGG GGAGCACTGTGACACCACA AGTGGAGCACTGTGACABCACAGTGG Direction: Forward Position #: 4 Overlap #: 19 Alignment: AGTRGDBCACTGTGACMBHDCAGTGG ---GGAGCACTGTGACACCACA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif AGTGGAGCACTGTGACABCACAGTGG VDBHMAGGTCACCCTGACCY AGTGGDBCMVKGTSACMBYRMMSTGG Direction: Forward Position #: 5 Overlap #: 20 Alignment: AGTGGAGCACTGTGACABCACAGTGG ----VDBHMAGGTCACCCTGACCY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif CCASRRMMBRGTSACYVYGBDCCACT TTCAGCACCATGGACAGCKCC TTCMRSACCABGGWCASCDYBBDCCACT Direction: Forward Position #: 3 Overlap #: 19 Alignment: --CCASRRMMBRGTSACYVYGBDCCACT TTCAGCACCATGGACAGCKCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Reverse Complement AGTGGDBBKHGSTGWCCVTGGTSMYGAA ACTGTGACACCACAGTGGAGCACT ACTGTGACACCACAGTGGAGCACKSTGWCCVTGGTSMYGAA Direction: Forward Position #: 14 Overlap #: 11 Alignment: -------------AGTGGDBBKHGSTGWCCVTGGTSMYGAA ACTGTGACACCACAGTGGAGCACT----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Original Motif ACTGTGACACCACAGTGGAGCACKSTGWCCVTGGTSMYGAA YDRCCASYAGRKGGCRSYV ACTGTGACABVMCASYRGRGGRCDSTVWCCVTGGTSMYGAA Direction: Forward Position #: 9 Overlap #: 19 Alignment: ACTGTGACACCACAGTGGAGCACKSTGWCCVTGGTSMYGAA --------YDRCCASYAGRKGGCRSYV-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 2 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 NR1H2RXRA Original Motif Reverse Complement TGAMCTTTGMMCYT GTTGACCTTTGACCTTT GTTGACCTTTGACCTTT Direction: Backward Position #: 2 Overlap #: 14 Alignment: --TGAMCTTTGMMCYT- GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Original Motif AAAGGTCAAAGGTCAAC BTRGGDCARAGGKCA VDRGGKCAAAGGTCAAC Direction: Forward Position #: 1 Overlap #: 15 Alignment: AAAGGTCAAAGGTCAAC BTRGGDCARAGGKCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement GTTGACCTTTGRCCKDB AGTGSWSCACTGTGAMAMCACAGTG AGTGBWGMMCTKTGACMHCACAGTG Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---GTTGACCTTTGRCCKDB----- AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement AGTGBWGMMCTKTGACMHCACAGTG BAGGYCABHBTGACCKHV AGTVGKBCACTBTGACCBHDCAGTG Direction: Forward Position #: 3 Overlap #: 18 Alignment: AGTGBWGMMCTKTGACMHCACAGTG --BAGGYCABHBTGACCKHV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif CACTGDHVGGTCABAGTGBYCVACT TTCAGCACCATGGACAGCKCC TTCAGCACCATGSACWGBDVVGTCABAGTGBYCVACT Direction: Forward Position #: 13 Overlap #: 9 Alignment: ------------CACTGDHVGGTCABAGTGBYCVACT TTCAGCACCATGGACAGCKCC---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Reverse Complement Reverse Complement AGTVGKBCACTBTGACVVDBCWGTSCATGGTGCTGAA CCACTGTGVTGTCACAGTGCTCCA AGTVGKBCACTGTGVYGTCACAGTGCWHSRTGCTGAA Direction: Forward Position #: 7 Overlap #: 24 Alignment: AGTVGKBCACTBTGACVVDBCWGTSCATGGTGCTGAA ------CCACTGTGVTGTCACAGTGCTCCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Original Motif AGTVGKBCACTGTGVYGTCACAGTGCWHSRTGCTGAA TGTGGTGTCACAGTGCTCC TRKKGTGTCACWGTGVTSBCACAGTGCWHSRTGCTGAA Direction: Forward Position #: 2 Overlap #: 18 Alignment: -AGTVGKBCACTGTGVYGTCACAGTGCWHSRTGCTGAA TGTGGTGTCACAGTGCTCC------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Reverse Complement TTCAGCAMSDWGCACTGTGBSAVCACWGTGACACYRKA TGMYCTTTGBCCK TTCAGCAMSDWGVMCTKTGBBMDCACWGTGACACYRKA Direction: Forward Position #: 11 Overlap #: 13 Alignment: TTCAGCAMSDWGCACTGTGBSAVCACWGTGACACYRKA ----------TGMYCTTTGBCCK--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Reverse Complement TRKKGTGTCACWGTGHRBBCAYAGYVCWHSRTGCTGAA MGGTCAGGGTGACCTRDBHV TRKKGTGTCACWGTGHRBBCAYAGYVSGYCAKGCTGAMCTRDBHV Direction: Forward Position #: 26 Overlap #: 13 Alignment: TRKKGTGTCACWGTGHRBBCAYAGYVCWHSRTGCTGAA------- -------------------------MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb Combined Motif Original Motif Original Motif TRKKGTGTCACWGTGHRBBCAYAGYVSGYCAKGCTGAMCTRDBHV VBBYCAAGGTCA TRKKGTGTCACWGTGHDBBYMHAGGDCAYCAKGCTGAMCTRDBHV Direction: Forward Position #: 17 Overlap #: 12 Alignment: TRKKGTGTCACWGTGHRBBCAYAGYVSGYCAKGCTGAMCTRDBHV ----------------VBBYCAAGGTCA----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 3 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement VDBHMAGGTCACCCTGACCY CCACTGTGVTGTCACAGTGCTCCA CCACTGTVRKGTCACMSTGMYCYA Direction: Backward Position #: 2 Overlap #: 20 Alignment: ---VDBHMAGGTCACCCTGACCY- CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif CCACTGTVRKGTCACMSTGMYCYA CACTGTGRTRTCACAGTGSWSCACT CACTGTGRTRTCACAGTGSWCCACTGTVRKGTCACMSTGMYCYA Direction: Forward Position #: 21 Overlap #: 5 Alignment: --------------------CCACTGTVRKGTCACMSTGMYCYA CACTGTGRTRTCACAGTGSWSCACT------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Original Motif TKGMRCASYGTGACRKVACAGTGGWSCACTGTGAMAMCACAGTG TGTGGTGTCACAGTGCTCC TKGMRCASYGTGACRKHVYRGTGKMRCASTGYKMCAMCACAGTG Direction: Forward Position #: 17 Overlap #: 19 Alignment: TKGMRCASYGTGACRKVACAGTGGWSCACTGTGAMAMCACAGTG ----------------TGTGGTGTCACAGTGCTCC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Original Motif CACTGTGRTGRYMCASTGKRRCACMMVHRKGTCACMSTGMYCYA YDRCCASYAGRKGGCRSYV CACTGTGRTBDBCCASTRGRDSRCVVHVRKGTCACMSTGMYCYA Direction: Forward Position #: 10 Overlap #: 19 Alignment: CACTGTGRTGRYMCASTGKRRCACMMVHRKGTCACMSTGMYCYA ---------YDRCCASYAGRKGGCRSYV---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement CACTGTGRTBDBCCASTRGRDSRCVVHVRKGTCACMSTGMYCYA BAGGYCABHBTGACCKHV CACTGTGRTBDBCCASTRGRDSRCVVHVAGGTCACHBTGACCBAV Direction: Forward Position #: 28 Overlap #: 17 Alignment: CACTGTGRTBDBCCASTRGRDSRCVVHVRKGTCACMSTGMYCYA- ---------------------------BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif VTVGGTCABDGTGACCTVDVBGKSHMCKASTGGVHBAMCACAGTG TTCAGCACCATGGACAGCKCC BTCRGYMMCDBKGACMGVDVBGKSHMCKASTGGVHBAMCACAGTG Direction: Forward Position #: 1 Overlap #: 21 Alignment: VTVGGTCABDGTGACCTVDVBGKSHMCKASTGGVHBAMCACAGTG TTCAGCACCATGGACAGCKCC------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Reverse Complement Reverse Complement CACTGTGRTBDBCCASTRGRDSRCBVHVCYGTCYVDGRYKCKGAV ACTGTGGTGTCACART ACTGYRSTGTSAYADBCCASTRGRDSRCBVHVCYGTCYVDGRYKCKGAV Direction: Forward Position #: 5 Overlap #: 12 Alignment: ----CACTGTGRTBDBCCASTRGRDSRCBVHVCYGTCYVDGRYKCKGAV ACTGTGGTGTCACART--------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif ACTGYRSTGTSAYADBCCASTRGRDSRCBVHVCYGTCYVDGRYKCKGAV AGTGCTCCACTGTGGTGTCACAGT AGTRCTSCACTGTGRTRTCMCASTRGRDSRCBVHVCYGTCYVDGRYKCKGAV Direction: Forward Position #: 4 Overlap #: 21 Alignment: ---ACTGYRSTGTSAYADBCCASTRGRDSRCBVHVCYGTCYVDGRYKCKGAV AGTGCTCCACTGTGGTGTCACAGT---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif AGTRCTSCACTGTGRTRTCMCASTRGRDSRCBVHVCYGTCYVDGRYKCKGAV BTRGGDCARAGGKCA AGTRCTSCACTGTGRTRTCMCASTRGRDSRCBVBBVBGBCMRAGGYBMKGAV Direction: Forward Position #: 34 Overlap #: 15 Alignment: AGTRCTSCACTGTGRTRTCMCASTRGRDSRCBVHVCYGTCYVDGRYKCKGAV ---------------------------------BTRGGDCARAGGKCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif BTCRRBMCCTKYGVCBVVBVBGKSHMCKASTGYGAMAMCACAGTGSAGKACT AAAGGTCAAAGGTCAAC AAAGGTCAAAGGTCAASMCCTKYGVCBVVBVBGKSHMCKASTGYGAMAMCACAGTGSAGKACT Direction: Forward Position #: 12 Overlap #: 6 Alignment: -----------BTCRRBMCCTKYGVCBVVBVBGKSHMCKASTGYGAMAMCACAGTGSAGKACT AAAGGTCAAAGGTCAAC---------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 4 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb NR2F1 Reverse Complement Original Motif TGACCTTGMBBB TGAMCTTTGMMCYT TGWSMYYTKRMCHB Direction: Backward Position #: 1 Overlap #: 12 Alignment: --TGACCTTGMBBB TGAMCTTTGMMCYT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Reverse Complement VDGYMYAKKRSWCA TGRCCTKTGHCCKAB TGRCCTKTGHCMKVBMYAKKRSWCA Direction: Forward Position #: 12 Overlap #: 4 Alignment: -----------VDGYMYAKKRSWCA TGRCCTKTGHCCKAB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Reverse Complement TGRCCTKTGHCMKVBMYAKKRSWCA TGMYCTTTGBCCK TGRCCTTKVYCHTTBVYMKKRSWCA Direction: Forward Position #: 7 Overlap #: 13 Alignment: TGRCCTKTGHCMKVBMYAKKRSWCA ------TGMYCTTTGBCCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Reverse Complement TGRCCTTKVYCHTTBVYMKKRSWCA GTTGACCTTTGACCTTT GTTGACCTTTGACCTTBVYMKKRSWCA Direction: Forward Position #: 3 Overlap #: 15 Alignment: --TGRCCTTKVYCHTTBVYMKKRSWCA GTTGACCTTTGACCTTT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement GTTGACCTTTGACCTTBVYMKKRSWCA MGGTCAGGGTGACCTRDBHV VKKKMMCKKTGACCTDBBHVKKRSWCA Direction: Forward Position #: 1 Overlap #: 20 Alignment: GTTGACCTTTGACCTTBVYMKKRSWCA MGGTCAGGGTGACCTRDBHV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement TGWSMYYBDBBDAGGTCARRGRRYYRV BAGGYCABHBTGACCKHV TGWVMBBYVVBVVKGWCMDDGRRYYRV Direction: Forward Position #: 4 Overlap #: 18 Alignment: TGWSMYYBDBBDAGGTCARRGRRYYRV ---BAGGYCABHBTGACCKHV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif VKKKMMCDHYGWCRBBBBVMBBYVWCA TTCAGCACCATGGACAGCKCC TTCAGBACCDHGGACAGBDBBMBBYVWCA Direction: Forward Position #: 3 Overlap #: 19 Alignment: --VKKKMMCDHYGWCRBBBBVMBBYVWCA TTCAGCACCATGGACAGCKCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Original Motif TGWVMBBYBBHBCTGTCCHDGGTBCTGAA TGTGGTGTCACAGTGCTCC TGTGGTGTCACDBTGCTCYGTCCHDGGTBCTGAA Direction: Forward Position #: 6 Overlap #: 14 Alignment: -----TGWVMBBYBBHBCTGTCCHDGGTBCTGAA TGTGGTGTCACAGTGCTCC--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Reverse Complement TGTGGTGTCACDBTGCTCYGTCCHDGGTBCTGAA CCACTGTGVTGTCACAGTGCTCCA TGTGGTGHCACTGTGBTSTSWCHVTGSTCCWGAA Direction: Forward Position #: 8 Overlap #: 24 Alignment: TGTGGTGTCACDBTGCTCYGTCCHDGGTBCTGAA -------CCACTGTGVTGTCACAGTGCTCCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement TTCWGGASCAVHGWSASABCACAGTGHCACCACA AGTGSWSCACTGTGAMAMCACAGTG AKTSBDSMACWGTGWCAVMACASWGTGHCACCACA Direction: Forward Position #: 2 Overlap #: 24 Alignment: -TTCWGGASCAVHGWSASABCACAGTGHCACCACA AGTGSWSCACTGTGAMAMCACAGTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 5 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ZEB1 CTCF Reverse Complement Original Motif HAGGTG YDRCCASYAGRKGGCRSYV YDRCCASYAGGTGGCRSYV Direction: Forward Position #: 8 Overlap #: 6 Alignment: -------HAGGTG------ YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RORA_1 Reverse Complement Reverse Complement BMSMGCCACCTKSTGGMHM TGACCTDVWT TGACCTHGMKCCACCTKSTGGMHM Direction: Forward Position #: 6 Overlap #: 5 Alignment: -----BMSMGCCACCTKSTGGMHM TGACCTDVWT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif YDRCCASYAGGTGGYYCHAGGTCA TTCAGCACCATGGACAGCKCC TTCAGCACCAYGGMCAGCASSTGGYYCHAGGTCA Direction: Forward Position #: 11 Overlap #: 11 Alignment: ----------YDRCCASYAGGTGGYYCHAGGTCA TTCAGCACCATGGACAGCKCC------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb Combined Motif Original Motif Reverse Complement TTCAGCACCAYGGMCAGCASSTGGYYCHAGGTCA TGACCTTGMBBB TTCAGCACCATGRCCWKSASVKGGYYCHAGGTCA Direction: Forward Position #: 11 Overlap #: 12 Alignment: TTCAGCACCAYGGMCAGCASSTGGYYCHAGGTCA ----------TGACCTTGMBBB------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Reverse Complement TGACCTHGMKCCRVSTSRWGGKCATGGTGCTGAA GTTGACCTTTGACCTTT GTTGACCTTTRACCDBBTSRWGGKCATGGTGCTGAA Direction: Forward Position #: 3 Overlap #: 15 Alignment: --TGACCTHGMKCCRVSTSRWGGKCATGGTGCTGAA GTTGACCTTTGACCTTT------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif TTCAGCACCATGRCCWKSAVVDGGTMAAAGGTCAAC BTRGGDCARAGGKCA TTCAGCACCATGVHVDGBVARAGGTCAAAGGTCAAC Direction: Forward Position #: 13 Overlap #: 15 Alignment: TTCAGCACCATGRCCWKSAVVDGGTMAAAGGTCAAC ------------BTRGGDCARAGGKCA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR4A2 Reverse Complement Original Motif GTTGACCTTTGACCTKTVBCHVDVCATGGTGCTGAA AAGGTCAC AAGKTSACCTTTGACCTKTVBCHVDVCATGGTGCTGAA Direction: Forward Position #: 3 Overlap #: 6 Alignment: --GTTGACCTTTGACCTKTVBCHVDVCATGGTGCTGAA AAGGTCAC------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif AAGKTSACCTTTGACCTKTVBCHVDVCATGGTGCTGAA VDBHMAGGTCACCCTGACCY AAGKTSACCBDBVVMSKTYABCHDGMCMTGGTGCTGAA Direction: Forward Position #: 10 Overlap #: 20 Alignment: AAGKTSACCTTTGACCTKTVBCHVDVCATGGTGCTGAA ---------VDBHMAGGTCACCCTGACCY--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Combined Motif Reverse Complement Original Motif TTCAGCACCARGYCDDGBTKAYSRBVVDVGGTSAYCTT HSCACGTGGC TTCAGCACSHGGYCDDGBTKAYSRBVVDVGGTSAYCTT Direction: Forward Position #: 4 Overlap #: 10 Alignment: TTCAGCACCARGYCDDGBTKAYSRBVVDVGGTSAYCTT ---HSCACGTGGC------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement TTCAGCACSHGGYCDDGBTKAYSRBVVDVGGTSAYCTT DCCACGTGCV DCCACGTKCVGCACSHGGYCDDGBTKAYSRBVVDVGGTSAYCTT Direction: Forward Position #: 7 Overlap #: 4 Alignment: ------TTCAGCACSHGGYCDDGBTKAYSRBVVDVGGTSAYCTT DCCACGTGCV---------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 6 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Myc Reverse Complement Reverse Complement GCCACGTGSD DCCACGTGCV GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSD DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Reverse Complement Reverse Complement VSCACGTGGC SBCGCGGGGSB VSCRCGKGGVB Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCACGTGGC- SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Reverse Complement Original Motif BVCCYCGMGSV YDRCCASYAGRKGGCRSYV YBVCCHCGAGVKGGCRSYV Direction: Forward Position #: 2 Overlap #: 11 Alignment: -BVCCYCGMGSV------- YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk Combined Motif Original Motif Reverse Complement YBVCCHCGAGVKGGCRSYV BBSGGCGGGGBS YBVCCVSGMGGGGGCRSYV Direction: Forward Position #: 4 Overlap #: 12 Alignment: YBVCCHCGAGVKGGCRSYV ---BBSGGCGGGGBS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif BMSMGCCCCCRCSVGGVBM CACTGTGRTRTCACAGTGSWSCACT CACTGTGRTRTCACAGTGBWSCRCYCCCRCSVGGVBM Direction: Forward Position #: 19 Overlap #: 7 Alignment: ------------------BMSMGCCCCCRCSVGGVBM CACTGTGRTRTCACAGTGSWSCACT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif CACTGTGRTRTCACAGTGBWSCRCYCCCRCSVGGVBM VDBHMAGGTCACCCTGACCY CACTGTGRTRTCACAGTGBWSCRCBBSCVVGGKSABMCTGACCY Direction: Forward Position #: 25 Overlap #: 13 Alignment: CACTGTGRTRTCACAGTGBWSCRCYCCCRCSVGGVBM------- ------------------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Reverse Complement CACTGTGRTRTCACAGTGBWSCRCBBSCVVGGKSABMCTGACCY ABCACAGTGGAGCACTG ABCACWGTGGWGYMMYRGTGBWSCRCBBSCVVGGKSABMCTGACCY Direction: Forward Position #: 3 Overlap #: 15 Alignment: --CACTGTGRTRTCACAGTGBWSCRCBBSCVVGGKSABMCTGACCY ABCACAGTGGAGCACTG----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Reverse Complement ABCACWGTGGWGYMMYRGTGBWSCRCBBSCVVGGKSABMCTGACCY TGMYCTTTGBCCK ABCACWGTGGWGYMMYRGTGBWSCRCBBSMHCKKTGVHCBTGACCY Direction: Forward Position #: 28 Overlap #: 13 Alignment: ABCACWGTGGWGYMMYRGTGBWSCRCBBSCVVGGKSABMCTGACCY ---------------------------TGMYCTTTGBCCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif ABCACWGTGGWGYMMYRGTGBWSCRCBBSMHCKKTGVHCBTGACCY AGTGCTCCACTGTGGTGTCACAGT AGTGCWCCACTGTGGTGTCACAGTGBWSCRCBBSMHCKKTGVHCBTGACCY Direction: Forward Position #: 6 Overlap #: 19 Alignment: -----ABCACWGTGGWGYMMYRGTGBWSCRCBBSMHCKKTGVHCBTGACCY AGTGCTCCACTGTGGTGTCACAGT--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif AGTGCWCCACTGTGGTGTCACAGTGBWSCRCBBSMHCKKTGVHCBTGACCY BTRGGDCARAGGKCA AGTGCWCCACTGTGGTGTCACAGTGBWSCVYVBGVCMDDKGBCMBTGACCY Direction: Forward Position #: 30 Overlap #: 15 Alignment: AGTGCWCCACTGTGGTGTCACAGTGBWSCRCBBSMHCKKTGVHCBTGACCY -----------------------------BTRGGDCARAGGKCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 7 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif GGYGCTGTCCATGGTGCTGAA AGTGCTCCACTGTGGTGTCACAGT GGHGYKSTCCAYKGTGSTGWMACAGT Direction: Backward Position #: 6 Overlap #: 19 Alignment: GGYGCTGTCCATGGTGCTGAA----- --AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif GGHGYKSTCCAYKGTGSTGWMACAGT VDBHMAGGTCACCCTGACCY GVHVYDGKYCACBSTGVYSTMACAGT Direction: Forward Position #: 1 Overlap #: 20 Alignment: GGHGYKSTCCAYKGTGSTGWMACAGT VDBHMAGGTCACCCTGACCY------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Reverse Complement GVHVYDGKYCACBSTGVYSTMACAGT ABCACAGTGGAGCACTG ABCACAGTGGDGCACBGTGVYSTMACAGT Direction: Forward Position #: 4 Overlap #: 14 Alignment: ---GVHVYDGKYCACBSTGVYSTMACAGT ABCACAGTGGAGCACTG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Reverse Complement Original Motif ACTGTRASMVCACVGTGCDCCACTGTGBT AMTGTGACACCACAGT ACTGTGACAVCACAGTGCDCCACTGTGBT Direction: Forward Position #: 1 Overlap #: 16 Alignment: ACTGTRASMVCACVGTGCDCCACTGTGBT AMTGTGACACCACAGT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement ABCACAGTGGDGCACTGTGVTGTCACAGT CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVTGTCACAGTGCWCCACAGTGGDGCACTGTGVTGTCACAGT Direction: Forward Position #: 21 Overlap #: 4 Alignment: --------------------ABCACAGTGGDGCACTGTGVTGTCACAGT CCACTGTGVTGTCACAGTGCTCCA------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif CCACTGTGVTGTCACAGTGCWCCACAGTGGDGCACTGTGVTGTCACAGT VHRGGTCABDBTGMCCTB CCACTGTGVTGTCACASTGSDYCABDGTGVHSYACTGTGVTGTCACAGT Direction: Forward Position #: 17 Overlap #: 18 Alignment: CCACTGTGVTGTCACAGTGCWCCACAGTGGDGCACTGTGVTGTCACAGT ----------------VHRGGTCABDBTGMCCTB--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Original Motif CCACTGTGVTGTCACASTGSDYCABDGTGVHSYACTGTGVTGTCACAGT RGGBCAAAGKYCA CCACTGTGVTGTCACASTRGDBCAVAGTBVHSYACTGTGVTGTCACAGT Direction: Forward Position #: 19 Overlap #: 13 Alignment: CCACTGTGVTGTCACASTGSDYCABDGTGVHSYACTGTGVTGTCACAGT ------------------RGGBCAAAGKYCA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Reverse Complement ACTGTGACAVCACAGTKSHVBACTBTGVHCMASTGTGACAVCACAGTGG TGRCCTKTGHCCKAB ACTGTGACAVCACAGTKSHBBRCYTTKVHCCDVBGTGACAVCACAGTGG Direction: Forward Position #: 20 Overlap #: 15 Alignment: ACTGTGACAVCACAGTKSHVBACTBTGVHCMASTGTGACAVCACAGTGG -------------------TGRCCTKTGHCCKAB--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Reverse Complement ACTGTGACAVCACAGTKSHBBRCYTTKVHCCDVBGTGACAVCACAGTGG AGTGSWSCACTGTGAMAMCACAGTG ACTGTGACAVCACAGTKSHBBRCHKTGSHSCACTGTGACAVCACAGTGG Direction: Forward Position #: 24 Overlap #: 25 Alignment: ACTGTGACAVCACAGTKSHBBRCYTTKVHCCDVBGTGACAVCACAGTGG -----------------------AGTGSWSCACTGTGAMAMCACAGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwCCAmAGTCmt Combined Motif Reverse Complement Original Motif CCACTGTGVTGTCACAGTGSHSCAYHGKBVHSYACTGTGVTGTCACAGT DDCCAMAGTCHB CCACTGTGVTGTCACAGTGVHCCACAGTCVHSYACTGTGVTGTCACAGT Direction: Forward Position #: 20 Overlap #: 12 Alignment: CCACTGTGVTGTCACAGTGSHSCAYHGKBVHSYACTGTGVTGTCACAGT -------------------DDCCAMAGTCHB------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 8 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Mycn Original Motif Original Motif VGCACGTGGH HSCACGTGGC VSCACGTGGC Direction: Backward Position #: 1 Overlap #: 10 Alignment: VGCACGTGGH HSCACGTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Original Motif Reverse Complement VSCACGTGGC SBCGCGGGGSB VSCRCGKGGVB Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCACGTGGC- SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCCCCGCSssk Reverse Complement Original Motif BVCCYCGMGSV SBCCCCGCCSBB SBCCCCGCSSBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BVCCYCGMGSV- SBCCCCGCCSBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Reverse Complement Original Motif BBSSGCGGGGBS YDRCCASYAGRKGGCRSYV YDRCCASYAGRBGGCRCGVGGBS Direction: Forward Position #: 12 Overlap #: 8 Alignment: -----------BBSSGCGGGGBS YDRCCASYAGRKGGCRSYV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif YDRCCASYAGRBGGCRCGVGGBS CACTGTGRTRTCACAGTGSWSCACT CACTGTGDBRYCACARKGSDSCRCKVGGBS Direction: Forward Position #: 8 Overlap #: 18 Alignment: -------YDRCCASYAGRBGGCRCGVGGBS CACTGTGRTRTCACAGTGSWSCACT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Reverse Complement SBCCVRGKGSDSCYKTGTGKMVDCACAGTG TGMYCTTTGBCCK SBCCVRGKKSVBCTTTGTSBBVDCACAGTG Direction: Forward Position #: 9 Overlap #: 13 Alignment: SBCCVRGKGSDSCYKTGTGKMVDCACAGTG --------TGMYCTTTGBCCK--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif CACTGTGDBBBSACAAAGBBSYRCKVGGBS VDBHMAGGTCACCCTGACCY CACTGTGDBBBSACAAAGBBCHASGDSRBBCTGACCY Direction: Forward Position #: 18 Overlap #: 13 Alignment: CACTGTGDBBBSACAAAGBBSYRCKVGGBS------- -----------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Reverse Complement CACTGTGDBBBSACAAAGBBCHASGDSRBBCTGACCY ABCACAGTGGAGCACTG ABCACWGTGGAGCVMYRAAGBBCHASGDSRBBCTGACCY Direction: Forward Position #: 3 Overlap #: 15 Alignment: --CACTGTGDBBBSACAAAGBBCHASGDSRBBCTGACCY ABCACAGTGGAGCACTG---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement ABCACWGTGGAGCVMYRAAGBBCHASGDSRBBCTGACCY BAGGYCABHBTGACCKHV ABCACWGTGGAGCVMYRAAGBBCBAGGBCABBBTGACCTHV Direction: Forward Position #: 24 Overlap #: 16 Alignment: ABCACWGTGGAGCVMYRAAGBBCHASGDSRBBCTGACCY-- -----------------------BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Reverse Complement Original Motif VHAGGTCABBBTGVCCTBGBBCTTKKRBGCTCCACWGTGBT TGGAGCACTGTGACAVCACAGTGG VHAGGTCABBBTGVCCTGGAGCWBTGTGRCACCACAGTGGT Direction: Forward Position #: 17 Overlap #: 24 Alignment: VHAGGTCABBBTGVCCTBGBBCTTKKRBGCTCCACWGTGBT ----------------TGGAGCACTGTGACAVCACAGTGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 9 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement VHRGGTCABDBTGMCCTB CCACTGTGVTGTCACAGTGCTCCA CCACTGTDRKGTCACAGTGCYCYA Direction: Forward Position #: 7 Overlap #: 18 Alignment: ------VHRGGTCABDBTGMCCTB CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Original Motif TKGMGCACTGTGACRMHACAGTGG CACTGTGRTRTCACAGTGSWSCACT TKGMGCACTGTGAYRHCACAGTGSWSCACT Direction: Forward Position #: 6 Overlap #: 19 Alignment: TKGMGCACTGTGACRMHACAGTGG------ -----CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement TKGMGCACTGTGAYRHCACAGTGSWSCACT GGYGCTGTCCATGGTGCTGAA GGYGCTGTCCATGGTGCWSWRTGAYRHCACAGTGSWSCACT Direction: Forward Position #: 12 Overlap #: 10 Alignment: -----------TKGMGCACTGTGAYRHCACAGTGSWSCACT GGYGCTGTCCATGGTGCTGAA-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement GGYGCTGTCCATGGTGCWSWRTGAYRHCACAGTGSWSCACT MGGTCAGGGTGACCTRDBHV GGYGCTGTCCATVGKBCASDGTGACVTVDCAGTGSWSCACT Direction: Forward Position #: 13 Overlap #: 20 Alignment: GGYGCTGTCCATGGTGCWSWRTGAYRHCACAGTGSWSCACT ------------MGGTCAGGGTGACCTRDBHV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Original Motif AGTGSWSCACTGDVAVGTCACHSTGVYCVATGGACAGCKCC TGTGGTGTCACAGTGCTCC AGTGSWSCACTGTGVBGTCACASTGVTCCATGGACAGCKCC Direction: Forward Position #: 11 Overlap #: 19 Alignment: AGTGSWSCACTGDVAVGTCACHSTGVYCVATGGACAGCKCC ----------TGTGGTGTCACAGTGCTCC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif AGTGSWSCACTGTGVBGTCACASTGVTCCATGGACAGCKCC BTRGGDCARAGGKCA AGTGSWSCACTGTGVTGKSACARWGVTCMATGGACAGCKCC Direction: Forward Position #: 15 Overlap #: 15 Alignment: AGTGSWSCACTGTGVBGTCACASTGVTCCATGGACAGCKCC --------------BTRGGDCARAGGKCA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif GGYGCTGTCCATYGAVCWMTGTSRCAVCACAGTGSWSCACT TGAMCTTTGMMCYT KGAVCTKTSCMYYKAVCWMTGTSRCAVCACAGTGSWSCACT Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGYGCTGTCCATYGAVCWMTGTSRCAVCACAGTGSWSCACT TGAMCTTTGMMCYT--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Reverse Complement Reverse Complement AGTGSWSCACTGTGVTGKSACARWGVTYMKYGSARAGVTCR CKGGDTBDMMCTGG AGTGSWSCACTGYKGGDKBDMACWGGTYMKYGSARAGVTCR Direction: Forward Position #: 13 Overlap #: 14 Alignment: AGTGSWSCACTGTGVTGKSACARWGVTYMKYGSARAGVTCR ------------CKGGDTBDMMCTGG--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Original Motif AGTGSWSCACTGYKGGDKBDMACWGGTYMKYGSARAGVTCR YDRCCASYAGRKGGCRSYV AGTGSWSCACTGYKGGDKBDMACWGBBBCCWSBAGRGGKCRSYV Direction: Forward Position #: 26 Overlap #: 16 Alignment: AGTGSWSCACTGYKGGDKBDMACWGGTYMKYGSARAGVTCR--- -------------------------YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Reverse Complement AGTGSWSCACTGYKGGDKBDMACWGBBBCCWSBAGRGGKCRSYV TGMYCTTTGBCCK AGTGSWSCACTGYKGGDTGVHMBTKGBBCBWSBAGRGGKCRSYV Direction: Forward Position #: 18 Overlap #: 13 Alignment: AGTGSWSCACTGYKGGDKBDMACWGBBBCCWSBAGRGGKCRSYV -----------------TGMYCTTTGBCCK-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 10 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA REST Reverse Complement Reverse Complement GTTGACCTTTGACCTTT GGYGCTGTCCATGGTGCTGAA GGYGYTGWCCTTKGWSCTKWA Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---GTTGACCTTTGACCTTT- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Reverse Complement GGYGYTGWCCTTKGWSCTKWA TGRCCTKTGHCCKAB TGRSCKYTGHCCTWBGWSCTKWA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --GGYGYTGWCCTTKGWSCTKWA TGRCCTKTGHCCKAB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif TGRSCKYTGHCCTWBGWSCTKWA VDBHMAGGTCACCCTGACCY TVDBCBDKGHCMBHBKDVCYBWA Direction: Forward Position #: 2 Overlap #: 20 Alignment: TGRSCKYTGHCCTWBGWSCTKWA -VDBHMAGGTCACCCTGACCY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 11 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR4A2 NR1H2RXRA Original Motif Original Motif AAGGTCAC AAAGGTCAAAGGTCAAC AAAGGTCAMAGGTCAAC Direction: Backward Position #: 9 Overlap #: 8 Alignment: -AAGGTCAC-------- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement GTTGACCTYTGACCTTT MGGTCAGGGTGACCTRDBHV MGGTCAGGKTGACCTBTGACCTTT Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------GTTGACCTYTGACCTTT MGGTCAGGGTGACCTRDBHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif MGGTCAGGKTGACCTBTGACCTTT VHRGGTCABDBTGMCCTB MGGTCADRKKKMMCTBTGACCTBT Direction: Forward Position #: 6 Overlap #: 18 Alignment: MGGTCAGGKTGACCTBTGACCTTT -----VHRGGTCABDBTGMCCTB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Reverse Complement AVAGGTCABAGYRYYYMHTGACCY TGRCCTKTGHCCKAB AVWGRYCWBWGYVCBHVHTGACCY Direction: Forward Position #: 3 Overlap #: 15 Alignment: AVAGGTCABAGYRYYYMHTGACCY --TGRCCTKTGHCCKAB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement AVWGRYCWBWGYVCBHVHTGACCY AGTGSWSCACTGTGAMAMCACAGTG AGTGSWSCACTGTGAMAVVACAGTGYVCBHVHTGACCY Direction: Forward Position #: 15 Overlap #: 11 Alignment: --------------AVWGRYCWBWGYVCBHVHTGACCY AGTGSWSCACTGTGAMAMCACAGTG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Reverse Complement MGGTCADVDVGVKCACTGTVVTRTCACAGTGSWSCACT AKGYYCAAAGRTCA ADGBTCAAVGRKCRCACTGTVVTRTCACAGTGSWSCACT Direction: Forward Position #: 2 Overlap #: 13 Alignment: -MGGTCADVDVGVKCACTGTVVTRTCACAGTGSWSCACT AKGYYCAAAGRTCA------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif ADGBTCAAVGRKCRCACTGTVVTRTCACAGTGSWSCACT TTCAGCACCATGGACAGCKCC TTCAGCACCAHGGHCARVGVBCRCACTGTVVTRTCACAGTGSWSCACT Direction: Forward Position #: 10 Overlap #: 12 Alignment: ---------ADGBTCAAVGRKCRCACTGTVVTRTCACAGTGSWSCACT TTCAGCACCATGGACAGCKCC--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Reverse Complement Original Motif AGTGSWSCACTGTGAMAVVACAGTGKGVVCVMTGHCCHTGGTGCTGAA TGGAGCACTGTGACAVCACAGTGG AGTGSWSCACTGTKRVAGCACWGTGASAVCACWGTSSHTGGTGCTGAA Direction: Forward Position #: 14 Overlap #: 24 Alignment: AGTGSWSCACTGTGAMAVVACAGTGKGVVCVMTGHCCHTGGTGCTGAA -------------TGGAGCACTGTGACAVCACAGTGG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif AGTGSWSCACTGTKRVAGCACWGTGASAVCACWGTSSHTGGTGCTGAA AMTGTGACACCACAGT AMTRKKRCASCACWGTKRVAGCACWGTGASAVCACWGTSSHTGGTGCTGAA Direction: Forward Position #: 4 Overlap #: 13 Alignment: ---AGTGSWSCACTGTKRVAGCACWGTGASAVCACWGTSSHTGGTGCTGAA AMTGTGACACCACAGT----------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Reverse Complement TTCAGCACCAHSSACWGTGVTSTCACWGTGCTVMYACWGTGSTGKRRMART GGAGCACTGTGACACCACA TTCAGCACCAHSSACWGTGGKRKCACWGTGMYACCACWGTGSTGKRRMART Direction: Forward Position #: 20 Overlap #: 19 Alignment: TTCAGCACCAHSSACWGTGVTSTCACWGTGCTVMYACWGTGSTGKRRMART -------------------GGAGCACTGTGACACCACA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 12 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RORA_1 Esrrb Original Motif Original Motif AWVDAGGTCA VBBYCAAGGTCA VBDTCAAGGTCA Direction: Backward Position #: 1 Overlap #: 10 Alignment: --AWVDAGGTCA VBBYCAAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement VBDTCAAGGTCA MGGTCAGGGTGACCTRDBHV VGGTCARGGTSACCTRDBHV Direction: Forward Position #: 1 Overlap #: 12 Alignment: VBDTCAAGGTCA-------- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Original Motif VGGTCARGGTSACCTRDBHV AAAGGTCAAAGGTCAAC AAAGGTCMAAGGTCAMCTRDBHV Direction: Forward Position #: 4 Overlap #: 14 Alignment: ---VGGTCARGGTSACCTRDBHV AAAGGTCAAAGGTCAAC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Reverse Complement AAAGGTCMAAGGTCAMCTRDBHV AKGYYCAAAGRTCA AAAGGTYMAARGKYMACTRDBHV Direction: Forward Position #: 3 Overlap #: 14 Alignment: AAAGGTCMAAGGTCAMCTRDBHV --AKGYYCAAAGRTCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement AAAGGTYMAARGKYMACTRDBHV TGRCCTKTGHCCKAB AAAGGTBMMMDGTBMMCKVBBHV Direction: Forward Position #: 6 Overlap #: 15 Alignment: AAAGGTYMAARGKYMACTRDBHV -----TGRCCTKTGHCCKAB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif VDBBBRGRRBACDRYYBACCTTT TTCAGCACCATGGACAGCKCC TTCAGVACCDDGGACASVRYYBACCTTT Direction: Forward Position #: 6 Overlap #: 16 Alignment: -----VDBBBRGRRBACDRYYBACCTTT TTCAGCACCATGGACAGCKCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Reverse Complement AAAGGTBKKMVSTGTCCDDGGTVCTGAA TGMYCTTTGBCCK AAAGGTBGVYCYTKKCCHDGGTVCTGAA Direction: Forward Position #: 7 Overlap #: 13 Alignment: AAAGGTBKKMVSTGTCCDDGGTVCTGAA ------TGMYCTTTGBCCK--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Original Motif AAAGGTBGVYCYTKKCCHDGGTVCTGAA TGTGGTGTCACAGTGCTCC TGTGGTGTMAMRGTGSTCCYTKKCCHDGGTVCTGAA Direction: Forward Position #: 9 Overlap #: 11 Alignment: --------AAAGGTBGVYCYTKKCCHDGGTVCTGAA TGTGGTGTCACAGTGCTCC----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwCCAmAGTCmt Reverse Complement Original Motif TTCAGVACCDDGGYRAMGGASCACKRTRACACCACA DDCCAMAGTCHB DDYCASARYCVDGGYRAMGGASCACKRTRACACCACA Direction: Forward Position #: 2 Overlap #: 11 Alignment: -TTCAGVACCDDGGYRAMGGASCACKRTRACACCACA DDCCAMAGTCHB------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement DDYCASARYCVDGGYRAMGGASCACKRTRACACCACA BAGGYCABHBTGACCKHV DDYCASARYCVBVGBHMABBVTSACBDTRACACCACA Direction: Forward Position #: 12 Overlap #: 18 Alignment: DDYCASARYCVDGGYRAMGGASCACKRTRACACCACA -----------BAGGYCABHBTGACCKHV-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 13 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF ESR2 Reverse Complement Reverse Complement GCGGACGTTV BAGGYCABHBTGACCKHV BAGGYCABBCKGACSTWV Direction: Backward Position #: 1 Overlap #: 10 Alignment: --------GCGGACGTTV BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement BAGGYCABBCKGACSTWV MGGTCAGGGTGACCTRDBHV BAGGTCABBSTGACCTDVBHV Direction: Forward Position #: 2 Overlap #: 17 Alignment: BAGGYCABBCKGACSTWV--- -MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif VDBVDAGGTCASBBTGACCTB AAAGGTCAAAGGTCAAC AAAGGTCAAAGGTCAVCBTGACCTB Direction: Forward Position #: 5 Overlap #: 13 Alignment: ----VDBVDAGGTCASBBTGACCTB AAAGGTCAAAGGTCAAC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif gCGCGCsCgsG Reverse Complement Reverse Complement BAGGTCABGBTGACCTTTGACCTTT CGCGSGCGCGC CSMGSKCRCGBTGACCTTTGACCTTT Direction: Forward Position #: 2 Overlap #: 10 Alignment: -BAGGTCABGBTGACCTTTGACCTTT CGCGSGCGCGC--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Original Motif Original Motif CSMGSKCRCGBTGACCTTTGACCTTT YDRCCASYAGRKGGCRSYV YDRCCACBAGGKSGCGBTGACCTTTGACCTTT Direction: Forward Position #: 7 Overlap #: 13 Alignment: ------CSMGSKCRCGBTGACCTTTGACCTTT YDRCCASYAGRKGGCRSYV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif AAAGGTCAAAGGTCABCGCSYCCTBGTGGMHM TTCAGCACCATGGACAGCKCC TWMAGSWCMAWGGWCAGCGCCYCCTBGTGGMHM Direction: Forward Position #: 2 Overlap #: 20 Alignment: -AAAGGTCAAAGGTCABCGCSYCCTBGTGGMHM TTCAGCACCATGGACAGCKCC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif atactttggc Reverse Complement Original Motif YDRCCACBAGGKGGCGCTGWCCWTRGWSCTRWA ATACTTTGGC ATACTTTGGCCACBAGGKGGCGCTGWCCWTRGWSCTRWA Direction: Forward Position #: 7 Overlap #: 4 Alignment: ------YDRCCACBAGGKGGCGCTGWCCWTRGWSCTRWA ATACTTTGGC----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Reverse Complement Reverse Complement TWMAGSWCMAWGGWCAGCGCCYCCTBGTGGCCAAAGTAT DCCACGTGCV TWMAGSDCCAMGKGCAGCGCCYCCTBGTGGCCAAAGTAT Direction: Forward Position #: 7 Overlap #: 10 Alignment: TWMAGSWCMAWGGWCAGCGCCYCCTBGTGGCCAAAGTAT ------DCCACGTGCV----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cCGCGGrCACG Combined Motif Original Motif Reverse Complement TWMAGSDCCAMGKGCAGCGCCYCCTBGTGGCCAAAGTAT CGTGKCCGCGG TWCRKGKCCRCGKGCAGCGCCYCCTBGTGGCCAAAGTAT Direction: Forward Position #: 3 Overlap #: 11 Alignment: TWMAGSDCCAMGKGCAGCGCCYCCTBGTGGCCAAAGTAT --CGTGKCCGCGG-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Original Motif TWCRKGKCCRCGKGCAGCGCCYCCTBGTGGCCAAAGTAT HSCACGTGGC HSCACGKGGCCRCGKGCAGCGCCYCCTBGTGGCCAAAGTAT Direction: Forward Position #: 3 Overlap #: 8 Alignment: --TWCRKGKCCRCGKGCAGCGCCYCCTBGTGGCCAAAGTAT HSCACGTGGC------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 14 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA NR1H2RXRA Original Motif Original Motif BTRGGDCARAGGKCA AAAGGTCAAAGGTCAAC VDRGGTCAAAGGTCAAC Direction: Backward Position #: 3 Overlap #: 15 Alignment: BTRGGDCARAGGKCA-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Original Motif VDRGGTCAAAGGTCAAC VHRGGTCABDBTGMCCTB VDRGGTCAVAGKKCMMYB Direction: Forward Position #: 1 Overlap #: 17 Alignment: VDRGGTCAAAGGTCAAC- VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement BKYYGYYCTBTGACCKDV MGGTCAGGGTGACCTRDBHV MGGTCAGGGTGACCTRBBHHGYYCTBTGACCKDV Direction: Forward Position #: 17 Overlap #: 4 Alignment: ----------------BKYYGYYCTBTGACCKDV MGGTCAGGGTGACCTRDBHV-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif VDRGGTCAVAGKKCDDBBMAGGTCACCCTGACCY CACTGTGRTRTCACAGTGSWSCACT CACTGTGRKGTCACAGTGCDBCACWGGTCACCCTGACCY Direction: Forward Position #: 6 Overlap #: 20 Alignment: -----VDRGGTCAVAGKKCDDBBMAGGTCACCCTGACCY CACTGTGRTRTCACAGTGSWSCACT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Original Motif MGGTCAGGGTGACCWGTGBDGCACTGTGACYKCACAGTG YDRCCASYAGRKGGCRSYV MGGTCAGGGTGRCCASYRGRGSRCDSTGACYKCACAGTG Direction: Forward Position #: 10 Overlap #: 19 Alignment: MGGTCAGGGTGACCWGTGBDGCACTGTGACYKCACAGTG ---------YDRCCASYAGRKGGCRSYV----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement CACTGTGRKGTCASDGMSCKCKMSTGGKCACCCTGACCY GGYGCTGTCCATGGTGCTGAA GGYGCTGTCCAYKGTGCTGWVASDGMSCKCKMSTGGKCACCCTGACCY Direction: Forward Position #: 10 Overlap #: 12 Alignment: ---------CACTGTGRKGTCASDGMSCKCKMSTGGKCACCCTGACCY GGYGCTGTCCATGGTGCTGAA--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Reverse Complement Original Motif MGGTCAGGGTGRCCASYRGRGSRCDSTBWCAGCACRKTGGACAGCKCC TGGAGCACTGTGACAVCACAGTGG MGGTCAGGGTGRCCASTGGAGCACTGTGACAVCACAGTGGACAGCKCC Direction: Forward Position #: 17 Overlap #: 24 Alignment: MGGTCAGGGTGRCCASYRGRGSRCDSTBWCAGCACRKTGGACAGCKCC ----------------TGGAGCACTGTGACAVCACAGTGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Original Motif MGGTCAGGGTGRCCASTGGAGCACTGTGACAVCACAGTGGACAGCKCC TGTGGTGTCACAGTGCTCC MGGTCAGGGTGRCCASTGGWGYRSTGTSACAGYRCWSYGGACAGCKCC Direction: Forward Position #: 20 Overlap #: 19 Alignment: MGGTCAGGGTGRCCASTGGAGCACTGTGACAVCACAGTGGACAGCKCC -------------------TGTGGTGTCACAGTGCTCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Reverse Complement MGGTCAGGGTGRCCASTGGWGYRSTGTSACAGYRCWSYGGACAGCKCC AKGYYCAAAGRTCA AKGYYCAAAGGTCAGGGTGRCCASTGGWGYRSTGTSACAGYRCWSYGGACAGCKCC Direction: Forward Position #: 9 Overlap #: 6 Alignment: --------MGGTCAGGGTGRCCASTGGWGYRSTGTSACAGYRCWSYGGACAGCKCC AKGYYCAAAGRTCA------------------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Original Motif AKGYYCAAAGGTCAGGGTGRCCASTGGWGYRSTGTSACAGYRCWSYGGACAGCKCC CCAGYYHVADCCRG AKGYYCAAAGGTCAGGGTGRCCAGTDBDRDSCWGTSACAGYRCWSYGGACAGCKCC Direction: Forward Position #: 21 Overlap #: 14 Alignment: AKGYYCAAAGGTCAGGGTGRCCASTGGWGYRSTGTSACAGYRCWSYGGACAGCKCC --------------------CCAGYYHVADCCRG---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 15 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 ESR1 Original Motif Reverse Complement CCAGYYHVADCCRG MGGTCAGGGTGACCTRDBHV MGGYCAGBBTGAVCYRGBHV Direction: Forward Position #: 4 Overlap #: 14 Alignment: ---CCAGYYHVADCCRG--- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Original Motif MGGYCAGBBTGAVCYRGBHV YDRCCASYAGRKGGCRSYV HGGCCASBAKGDGSCRSBVV Direction: Forward Position #: 1 Overlap #: 19 Alignment: MGGYCAGBBTGAVCYRGBHV YDRCCASYAGRKGGCRSYV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement HGGCCASBAKGDGSCRSBVV BAGGYCABHBTGACCKHV HVGSCMVBHBKGRCCKBBVV Direction: Forward Position #: 1 Overlap #: 18 Alignment: HGGCCASBAKGDGSCRSBVV BAGGYCABHBTGACCKHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement HVGSCMVBHBKGRCCKBBVV TGRCCTKTGHCCKAB HVGBBACCTKTGVCCKVBVV Direction: Forward Position #: 4 Overlap #: 15 Alignment: HVGSCMVBHBKGRCCKBBVV ---TGRCCTKTGHCCKAB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Reverse Complement HVGBBACCTKTGVCCKVBVV ABCACAGTGGAGCACTG ABCACAGTGGWGMMCTKTGVCCKVBVV Direction: Forward Position #: 8 Overlap #: 10 Alignment: -------HVGBBACCTKTGVCCKVBVV ABCACAGTGGAGCACTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif VBBBYGGBCAYAGYRCWCCACTGTGBT CACTGTGRTRTCACAGTGSWSCACT CACTGTGHKGBCACAGTGCWCCACTGTGBT Direction: Forward Position #: 4 Overlap #: 22 Alignment: ---VBBBYGGBCAYAGYRCWCCACTGTGBT CACTGTGRTRTCACAGTGSWSCACT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif ABCACAGTGGWGCACTGTGVCRDCACAGTG TTCAGCACCATGGACAGCKCC TTCAGCACMRTGGASMRCTSYGVCRDCACAGTG Direction: Forward Position #: 4 Overlap #: 18 Alignment: ---ABCACAGTGGWGCACTGTGVCRDCACAGTG TTCAGCACCATGGACAGCKCC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Original Motif TTCAGCACMRTGGASMRCTSYGVCRDCACAGTG RGGBCAAAGKYCA TTCAGCACVGDGSAVAGBBSHGVCRDCACAGTG Direction: Forward Position #: 9 Overlap #: 13 Alignment: TTCAGCACMRTGGASMRCTSYGVCRDCACAGTG --------RGGBCAAAGKYCA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Original Motif Reverse Complement TTCAGCACVGDGSAVAGBBSHGVCRDCACAGTG AGTGCTCCACTGTGDTG AGTKCWSCACHGTGSWGAGBBSHGVCRDCACAGTG Direction: Forward Position #: 3 Overlap #: 15 Alignment: --TTCAGCACVGDGSAVAGBBSHGVCRDCACAGTG AGTGCTCCACTGTGDTG------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif CACTGTGHKGBCHSVBCTCWSCACHGTGSWGYACT TGAMCTTTGMMCYT TGMACTKTGVHSYYHSVBCTCWSCACHGTGSWGYACT Direction: Forward Position #: 3 Overlap #: 12 Alignment: --CACTGTGHKGBCHSVBCTCWSCACHGTGSWGYACT TGAMCTTTGMMCYT----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 16 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF ESR1 Original Motif Reverse Complement YDRCCASYAGRKGGCRSYV MGGTCAGGGTGACCTRDBHV MBGDCMRSBWGRBSKVRSHV Direction: Forward Position #: 2 Overlap #: 19 Alignment: -YDRCCASYAGRKGGCRSYV MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif MBGDCMRSBWGRBSKVRSHV AGTGCTCCACTGTGGTGTCACAGT AGTGCTCCACTGTGVTGTCAVVBTGRBSKVRSHV Direction: Forward Position #: 15 Overlap #: 10 Alignment: --------------MBGDCMRSBWGRBSKVRSHV AGTGCTCCACTGTGGTGTCACAGT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Original Motif AGTGCTCCACTGTGVTGTCAVVBTGRBSKVRSHV CACTGTGRTRTCACAGTGSWSCACT AGTGCTCCACTGTGVTGTCACAGTGVHSBAVBHV Direction: Forward Position #: 8 Overlap #: 25 Alignment: AGTGCTCCACTGTGVTGTCAVVBTGRBSKVRSHV -------CACTGTGRTRTCACAGTGSWSCACT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif AGTGCTCCACTGTGVTGTCACAGTGVHSBAVBHV CAGTGCTCCACTGTGBT CAGTGCTCCACTGTGVTGTCACAGTGVHSBAVBHV Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AGTGCTCCACTGTGVTGTCACAGTGVHSBAVBHV CAGTGCTCCACTGTGBT------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Original Motif Reverse Complement CAGTGCTCCACTGTGVTGTCACAGTGVHSBAVBHV AGTGCTCCACTGTGDTG CAGTGCTCCACTRKKGYKYCACWGTGVTGBAVBHV Direction: Forward Position #: 13 Overlap #: 17 Alignment: CAGTGCTCCACTGTGVTGTCACAGTGVHSBAVBHV ------------AGTGCTCCACTGTGDTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Reverse Complement CAGTGCTCCACTRKKGYKYCACWGTGVTGBAVBHV CCACTGTGVTGTCACAGTGCTCCA CAGTGCTCCACTGTGGTGTCACAGTGCTSCAVBHV Direction: Forward Position #: 8 Overlap #: 24 Alignment: CAGTGCTCCACTRKKGYKYCACWGTGVTGBAVBHV -------CCACTGTGVTGTCACAGTGCTCCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Reverse Complement CAGTGCTCCACTGTGGTGTCACAGTGCTSCAVBHV CKGGDTBDMMCTGG CAGTGCTCCACTGKKKTKHCMBRGTGCTSCAVBHV Direction: Forward Position #: 11 Overlap #: 14 Alignment: CAGTGCTCCACTGTGGTGTCACAGTGCTSCAVBHV ----------CKGGDTBDMMCTGG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Original Motif BDVVTGSAGCACMBRGHYARYYCAGTGGAGCACTG VHRGGTCABDBTGMCCTB BDVVTGSAGCACMBRGHYARYYCAGTGGRKCAVDGTGMCCTB Direction: Forward Position #: 25 Overlap #: 11 Alignment: BDVVTGSAGCACMBRGHYARYYCAGTGGAGCACTG------- ------------------------VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement BDVVTGSAGCACMBRGHYARYYCAGTGGRKCAVDGTGMCCTB TGRCCTKTGHCCKAB BDVVTGSAGCACMBRGHYARYYCAGTGGDGMMCTKTGHCCTVB Direction: Forward Position #: 29 Overlap #: 14 Alignment: BDVVTGSAGCACMBRGHYARYYCAGTGGRKCAVDGTGMCCTB- ----------------------------TGRCCTKTGHCCKAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk Combined Motif Reverse Complement Original Motif BBAGGDCAYAGYRCDCCACTGKKKTKHCMBRGTGCTSCAVBHV SBCCCCGCCSBB BBAGGDCAYAGYRCBCCMCYGBSBBBHCMBRGTGCTSCAVBHV Direction: Forward Position #: 15 Overlap #: 12 Alignment: BBAGGDCAYAGYRCDCCACTGKKKTKHCMBRGTGCTSCAVBHV --------------SBCCCCGCCSBB----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 17 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement TGTGGTGTCACAGTGCTCC CCACTGTGVTGTCACAGTGCTCCA CCACTGTGGTGTCACAGTGCTCCA Direction: Forward Position #: 5 Overlap #: 19 Alignment: ----TGTGGTGTCACAGTGCTCC- CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Original Motif CCACTGTGGTGTCACAGTGCTCCA CACTGTGRTRTCACAGTGSWSCACT CCACTGTGVTGTCACAGTGCTCCACT Direction: Forward Position #: 2 Overlap #: 23 Alignment: CCACTGTGGTGTCACAGTGCTCCA-- -CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif AGTGGAGCACTGTGACAVCACAGTGG AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGRYRTCACAGTGG Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTGGAGCACTGTGACAVCACAGTGG AGTGCTCCACTGTGGTGTCACAGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement AGTGSWSCACTGTGRYRTCACAGTGG MGGTCAGGGTGACCTRDBHV AGTVSKBCASKGTGACVTVACAVTGG Direction: Forward Position #: 4 Overlap #: 20 Alignment: AGTGSWSCACTGTGRYRTCACAGTGG ---MGGTCAGGGTGACCTRDBHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Original Motif CCAVTGTVAVGTCACRSTGBYSVACT VHRGGTCABDBTGMCCTB CCAVTGBDRGGTCACDBTGHCCHACT Direction: Forward Position #: 7 Overlap #: 18 Alignment: CCAVTGTVAVGTCACRSTGBYSVACT ------VHRGGTCABDBTGMCCTB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Reverse Complement Original Motif AGTHGGHCABDGTGACCKDVCAVTGG CAGTGCTCCACTGTGBT CAGTVSKCCACTGTGDYCKDVCAVTGG Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AGTHGGHCABDGTGACCKDVCAVTGG CAGTGCTCCACTGTGBT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif CAGTVSKCCACTGTGDYCKDVCAVTGG AMTGTGACACCACAGT AMYRKKACWCCACWGTGDYCKDVCAVTGG Direction: Forward Position #: 3 Overlap #: 14 Alignment: --CAGTVSKCCACTGTGDYCKDVCAVTGG AMTGTGACACCACAGT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif CCAVTGBDRGMDCACWGTGGWGTYRMMRT BTRGGDCARAGGKCA CCAVTSBDRGVBMAMKGTSRWGTYRMMRT Direction: Forward Position #: 6 Overlap #: 15 Alignment: CCAVTGBDRGMDCACWGTGGWGTYRMMRT -----BTRGGDCARAGGKCA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Original Motif Original Motif CCAVTSBDRGVBMAMKGTSRWGTYRMMRT CAHCACAGTGGAGCACT CACCACWGTGGRGCAMHKGTSRWGTYRMMRT Direction: Forward Position #: 3 Overlap #: 15 Alignment: --CCAVTSBDRGVBMAMKGTSRWGTYRMMRT CAHCACAGTGGAGCACT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Reverse Complement Reverse Complement AMYRKKACWKSACYHYTGCKCCACWGTGGTG TGACCTTGMBBB TGACCTTGACDDSACYHYTGCKCCACWGTGGTG Direction: Forward Position #: 3 Overlap #: 10 Alignment: --AMYRKKACWKSACYHYTGCKCCACWGTGGTG TGACCTTGMBBB--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 18 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sscCCCGCGcs ssCCCCGCSssk Original Motif Original Motif BSCCCCGCGBS SBCCCCGCCSBB SSCCCCGCSSSB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BSCCCCGCGBS- SBCCCCGCCSBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- gCGCGCsCgsG Combined Motif Reverse Complement Original Motif BSSSGCGGGGSS GCGCGCSCGCG BCGCGCGSGSGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: BSSSGCGGGGSS GCGCGCSCGCG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGCkTGCssk Combined Motif Reverse Complement Original Motif SCSCSCGCGCGB SSGCKTGCSSK SSGCGYGCSSKB Direction: Forward Position #: 1 Overlap #: 11 Alignment: SCSCSCGCGCGB SSGCKTGCSSK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Original Motif Original Motif SSGCGYGCSSKB YDRCCASYAGRKGGCRSYV YDRCCASYAGRKGGCVSCVYGCSSKB Direction: Forward Position #: 15 Overlap #: 5 Alignment: --------------SSGCGYGCSSKB YDRCCASYAGRKGGCRSYV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif YDRCCASYAGRKGGCVSCVYGCSSKB VDBHMAGGTCACCCTGACCY YDRCCVCHAGGKSRCVSYGHSCBSKB Direction: Forward Position #: 4 Overlap #: 20 Alignment: YDRCCASYAGRKGGCVSCVYGCSSKB ---VDBHMAGGTCACCCTGACCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cCGCGGrCACG Combined Motif Reverse Complement Original Motif BYSBGSHCMSVGMSRCCTDGBGGMHM CCGCGGRCACG BYSBGSBCRCGGACACSTDGBGGMHM Direction: Forward Position #: 7 Overlap #: 11 Alignment: BYSBGSHCMSVGMSRCCTDGBGGMHM ------CCGCGGRCACG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif BYSBGSBCRCGGACACSTDGBGGMHM TTCAGCACCATGGACAGCKCC TBCRGSMCCVYGGACASCTVSBGGMHM Direction: Forward Position #: 2 Overlap #: 20 Alignment: -BYSBGSBCRCGGACACSTDGBGGMHM TTCAGCACCATGGACAGCKCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement TBCRGSMCCVYGGACASCTVSBGGMHM DCCACGTGCV DYCASGHSCVYGGACASCTVSBGGMHM Direction: Forward Position #: 1 Overlap #: 10 Alignment: TBCRGSMCCVYGGACASCTVSBGGMHM DCCACGTGCV----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement DYCASGHSCVYGGACASCTVSBGGMHM GCCACGTGSD DCCACGTGCVYGGACASCTVSBGGMHM Direction: Forward Position #: 1 Overlap #: 10 Alignment: DYCASGHSCVYGGACASCTVSBGGMHM GCCACGTGSD----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- srACyCCGAyr Combined Motif Original Motif Original Motif DCCACGTGCVYGGACASCTVSBGGMHM SRACYCCGAYR DCCACGTGCVYGGACASCTVSBSRACHCCGAYR Direction: Forward Position #: 23 Overlap #: 5 Alignment: DCCACGTGCVYGGACASCTVSBGGMHM------ ----------------------SRACYCCGAYR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 19 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- atactttggc wwCCAmAGTCmt Reverse Complement Original Motif GCCAAAGTAT DDCCAMAGTCHB DGCCAAAGTMTB Direction: Forward Position #: 2 Overlap #: 10 Alignment: -GCCAAAGTAT- DDCCAMAGTCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif taaacgatgcc Original Motif Original Motif DGCCAAAGTMTB TAAACGATGCC TAAACGATGCCAAAGTMTB Direction: Forward Position #: 8 Overlap #: 4 Alignment: -------DGCCAAAGTMTB TAAACGATGCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Reverse Complement TAAACGATGCCAAAGTMTB GTTGACCTTTGACCTTT GTTGACCTTTRAMCKWTGCCAAAGTMTB Direction: Forward Position #: 10 Overlap #: 8 Alignment: ---------TAAACGATGCCAAAGTMTB GTTGACCTTTGACCTTT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Reverse Complement VAYACTTTGGCAWYGYTKAAAGGTCAAC GGAGCACTGTGACACCACA GGARCACTKTGRCAHCRYWKAAAGGTCAAC Direction: Forward Position #: 3 Overlap #: 17 Alignment: --VAYACTTTGGCAWYGYTKAAAGGTCAAC GGAGCACTGTGACACCACA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement GGARCACTKTGRCAHCRYWKAAAGGTCAAC AGTGSWSCACTGTGAMAMCACAGTG AGTGGAGCACTGTGACAHCACAGWRAGGTCAAC Direction: Forward Position #: 4 Overlap #: 22 Alignment: ---GGARCACTKTGRCAHCRYWKAAAGGTCAAC AGTGSWSCACTGTGAMAMCACAGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Reverse Complement Reverse Complement GTTGACCTKWCTGTGDTGTCACAGTGCTCCACT TGMYCTTTGBCCK TGMYCKTTGACCTKWCTGTGDTGTCACAGTGCTCCACT Direction: Forward Position #: 6 Overlap #: 8 Alignment: -----GTTGACCTKWCTGTGDTGTCACAGTGCTCCACT TGMYCTTTGBCCK------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Original Motif TGMYCKTTGACCTKWCTGTGDTGTCACAGTGCTCCACT TGAMCTTTGMMCYT TGAMCTTTGVCCYKWCTGTGDTGTCACAGTGCTCCACT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGMYCKTTGACCTKWCTGTGDTGTCACAGTGCTCCACT TGAMCTTTGMMCYT------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Original Motif TGAMCTTTGVCCYKWCTGTGDTGTCACAGTGCTCCACT TGGAGCACTGTGACAVCACAGTGG TGAMCTTTKRSMBYACTGTGAYRBCACAGTGSTCCACT Direction: Forward Position #: 9 Overlap #: 24 Alignment: TGAMCTTTGVCCYKWCTGTGDTGTCACAGTGCTCCACT --------TGGAGCACTGTGACAVCACAGTGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif AGTGGASCACTGTGVKKTCACAGTKBYSMYAAAGRTCA AGTGCTCCACTGTGGTGTCACAGT AGTGSTCCACTGTGVTGTCACAGTKBYSMYAAAGRTCA Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTGGASCACTGTGVKKTCACAGTKBYSMYAAAGRTCA AGTGCTCCACTGTGGTGTCACAGT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Reverse Complement Original Motif TGAMCTTTKRSMBYACTGTGACAVCACAGTGGASCACT CAHCACAGTGGAGCACT TGAMCTTTKRCABCACWGTGRMRCMMYAGTGGASCACT Direction: Forward Position #: 11 Overlap #: 17 Alignment: TGAMCTTTKRSMBYACTGTGACAVCACAGTGGASCACT ----------CAHCACAGTGGAGCACT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 20 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT CTCF Original Motif Reverse Complement CAGTGCTCCACTGTGBT BMSMGCCYMCTKSTGGMHM BMSMGYSCYCYACTGKGBH Direction: Backward Position #: 1 Overlap #: 17 Alignment: --CAGTGCTCCACTGTGBT BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif HBCRCAGTKGMGSMCYSYV TTCAGCACCATGGACAGCKCC TTCAGCACMVTGGASAVCBSYV Direction: Forward Position #: 4 Overlap #: 18 Alignment: ---HBCRCAGTKGMGSMCYSYV TTCAGCACCATGGACAGCKCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Original Motif BKSVGVTSTCCAVRGTGCTGAA TGTGGTGTCACAGTGCTCC TGTGGTGTCRCAGHKCTCCAVRGTGCTGAA Direction: Forward Position #: 9 Overlap #: 11 Alignment: --------BKSVGVTSTCCAVRGTGCTGAA TGTGGTGTCACAGTGCTCC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement TGTGGTGTCRCAGHKCTCCAVRGTGCTGAA ACTGTGACACCACAGTGGAGCACT ACTGTGRYRYCACAGTGSWSCACDGTGCTGAA Direction: Forward Position #: 3 Overlap #: 22 Alignment: --TGTGGTGTCRCAGHKCTCCAVRGTGCTGAA ACTGTGACACCACAGTGGAGCACT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Reverse Complement ACTGTGRYRYCACAGTGSWSCACDGTGCTGAA AGTGSWSCACTGTGAMAMCACAGTG ACWGTGVWGCMMYRKKRVAVCACAGTGCTGAA Direction: Forward Position #: 3 Overlap #: 25 Alignment: ACTGTGRYRYCACAGTGSWSCACDGTGCTGAA --AGTGSWSCACTGTGAMAMCACAGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Reverse Complement Original Motif TTCAGCACTGTGVTVMYRMMRYGCWVCACWGT TGGAGCACTGTGACAVCACAGTGG TKSAGCACTGTGAYAVCACAGTGVWVCACWGT Direction: Forward Position #: 1 Overlap #: 24 Alignment: TTCAGCACTGTGVTVMYRMMRYGCWVCACWGT TGGAGCACTGTGACAVCACAGTGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Original Motif Reverse Complement TKSAGCACTGTGAYAVCACAGTGVWVCACWGT AGTGCTCCACTGTGDTG AGTGCWSCACTGTGVTRVCACAGTGVWVCACWGT Direction: Forward Position #: 3 Overlap #: 15 Alignment: --TKSAGCACTGTGAYAVCACAGTGVWVCACWGT AGTGCTCCACTGTGDTG----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Reverse Complement Reverse Complement ACWGTGVWVCACTGTGVMABCACAGTGSWGCACT ACTGTGGTGTCACART ACTGTGGTGYMAYRKKVMABCACAGTGSWGCACT Direction: Forward Position #: 1 Overlap #: 16 Alignment: ACWGTGVWVCACTGTGVMABCACAGTGSWGCACT ACTGTGGTGTCACART------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Original Motif ACTGTGGTGYMAYRKKVMABCACAGTGSWGCACT CCAGYYHVADCCRG ACTGTGGTGYMMCRGBBHVDVMCAGTGSWGCACT Direction: Forward Position #: 12 Overlap #: 14 Alignment: ACTGTGGTGYMAYRKKVMABCACAGTGSWGCACT -----------CCAGYYHVADCCRG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwCCAmAGTCmt Original Motif Reverse Complement ACTGTGGTGYMMCRGBBHVDVMCAGTGSWGCACT VDGACTRTGGDD VDGACTGTGGTDYMMCRGBBHVDVMCAGTGSWGCACT Direction: Forward Position #: 4 Overlap #: 9 Alignment: ---ACTGTGGTGYMMCRGBBHVDVMCAGTGSWGCACT VDGACTRTGGDD------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 21 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AmTGTGACACCACAGT AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement AMTGTGACACCACAGT ACTGTGACACCACAGTGGAGCACT ACTGTGACACCACAGTGGAGCACT Direction: Forward Position #: 1 Overlap #: 16 Alignment: AMTGTGACACCACAGT-------- ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement ACTGTGACACCACAGTGGAGCACT CCACTGTGVTGTCACAGTGCTCCA CCACTGTGAYRYCACAGTGSWSCACT Direction: Forward Position #: 3 Overlap #: 22 Alignment: --ACTGTGACACCACAGTGGAGCACT CCACTGTGVTGTCACAGTGCTCCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Original Motif CCACTGTGAYRYCACAGTGSWSCACT CACTGTGRTRTCACAGTGSWSCACT CCACTGTGRYRTCACAGTGSWSCACT Direction: Forward Position #: 2 Overlap #: 25 Alignment: CCACTGTGAYRYCACAGTGSWSCACT -CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Original Motif AGTGSWSCACTGTGAMMKCACAGTGG TGTGGTGTCACAGTGCTCC TRKKGYDKCACWGTGMHMBCACAGTGG Direction: Forward Position #: 2 Overlap #: 18 Alignment: -AGTGSWSCACTGTGAMMKCACAGTGG TGTGGTGTCACAGTGCTCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Reverse Complement Original Motif CCACTGTGBRHRCACWGTGRHMCRRKA CAGTGCTCCACTGTGBT CCACYRKKGSTVCACWGTGVTMCRRKA Direction: Forward Position #: 5 Overlap #: 17 Alignment: CCACTGTGBRHRCACWGTGRHMCRRKA ----CAGTGCTCCACTGTGBT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Original Motif Original Motif CCACYRKKGSTVCACWGTGVTMCRRKA CAHCACAGTGGAGCACT CMCMMCAGTGSWGCACTGTGVTMCRRKA Direction: Forward Position #: 2 Overlap #: 16 Alignment: -CCACYRKKGSTVCACWGTGVTMCRRKA CAHCACAGTGGAGCACT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif CMCMMCAGTGSWGCACTGTGVTMCRRKA VDBHMAGGTCACCCTGACCY CMCMVBVBBRGRKCACHSTGVCMYRRKA Direction: Forward Position #: 5 Overlap #: 20 Alignment: CMCMMCAGTGSWGCACTGTGVTMCRRKA ----VDBHMAGGTCACCCTGACCY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement TRKKKRGBCASHGTGYMCMVBBBBRGYG GGYGCTGTCCATGGTGCTGAA GBHKYTGKCCABGGTGCTSMVBBBBRGYG Direction: Forward Position #: 2 Overlap #: 20 Alignment: -TRKKKRGBCASHGTGYMCMVBBBBRGYG GGYGCTGTCCATGGTGCTGAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif GBHKYTGKCCABGGTGCTSMVBBBBRGYG VHRGGTCABDBTGMCCTB GBHKYTGKCCABGGTGCTVHRGGTCABBGTGMCCTB Direction: Forward Position #: 19 Overlap #: 11 Alignment: GBHKYTGKCCABGGTGCTSMVBBBBRGYG------- ------------------VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif BAGGYCACVBTGACCKHVAGCACCBTGGRCAKYHVC AAAGGTCAAAGGTCAAC AAAGGTCAAAGGTCAMVBTGACCKHVAGCACCBTGGRCAKYHVC Direction: Forward Position #: 9 Overlap #: 9 Alignment: --------BAGGYCACVBTGACCKHVAGCACCBTGGRCAKYHVC AAAGGTCAAAGGTCAAC--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 22 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement CACTGTGRTRTCACAGTGSWSCACT ACTGTGACACCACAGTGGAGCACT CACTGTGAYAYCACAGTGSAGCACT Direction: Backward Position #: 1 Overlap #: 24 Alignment: CACTGTGRTRTCACAGTGSWSCACT -ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Reverse Complement Original Motif AGTGCTSCACTGTGMTKTCACAGTG TGGAGCACTGTGACAVCACAGTGG AGTGSWSCACTGTGAYRBCACAGTGG Direction: Forward Position #: 3 Overlap #: 23 Alignment: AGTGCTSCACTGTGMTKTCACAGTG- --TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif CCACTGTGVKKTCACAGTGSWSCACT VDBHMAGGTCACCCTGACCY CCACTGTVAKGTCACMSTGVYCYACT Direction: Forward Position #: 4 Overlap #: 20 Alignment: CCACTGTGVKKTCACAGTGSWSCACT ---VDBHMAGGTCACCCTGACCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Original Motif AGTKGKVCASYGTGACYTVACAGTGG YDRCCASYAGRKGGCRSYV AGTKGDCCASYRKGDSBYVVBAGTGG Direction: Forward Position #: 4 Overlap #: 19 Alignment: AGTKGKVCASYGTGACYTVACAGTGG ---YDRCCASYAGRKGGCRSYV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement AGTKGDCCASYRKGDSBYVVBAGTGG GGAGCACTGTGACACCACA GGAGCASTGKGACACCABRDSBYVVBAGTGG Direction: Forward Position #: 6 Overlap #: 14 Alignment: -----AGTKGDCCASYRKGDSBYVVBAGTGG GGAGCACTGTGACACCACA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Original Motif Original Motif GGAGCASTGKGACACCABRDSBYVVBAGTGG CAHCACAGTGGAGCACT GGAGCASTGKGACACCACAGTGBAGCABTGG Direction: Forward Position #: 13 Overlap #: 17 Alignment: GGAGCASTGKGACACCABRDSBYVVBAGTGG ------------CAHCACAGTGGAGCACT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Reverse Complement Reverse Complement CCABTGCTBCACTGTGGTGTCRCASTGCTCC ABCACAGTGGAGCACTG CCABTGCWBCACWGTGGWGYMVYRSTGCTCC Direction: Forward Position #: 8 Overlap #: 17 Alignment: CCABTGCTBCACTGTGGTGTCRCASTGCTCC -------ABCACAGTGGAGCACTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif CCABTGCWBCACWGTGGWGYMVYRSTGCTCC VHRGGTCABDBTGMCCTB CCAVWRSGYCACDGTGVHSYVVYRSTGCTCC Direction: Forward Position #: 4 Overlap #: 18 Alignment: CCABTGCWBCACWGTGGWGYMVYRSTGCTCC ---VHRGGTCABDBTGMCCTB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Reverse Complement CCAVWRSGYCACDGTGVHSYVVYRSTGCTCC ACTGTGGTGTCACART ACYRTKGTGTCACAGTGVHSYVVYRSTGCTCC Direction: Forward Position #: 2 Overlap #: 15 Alignment: -CCAVWRSGYCACDGTGVHSYVVYRSTGCTCC ACTGTGGTGTCACART---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Reverse Complement GGAGCASKMVBMSDVCACTGTGACACYAMMGT GGYGCTGTCCATGGTGCTGAA GGAGCAGKHGCTGTCCAHKGTGMYRMHAMMGT Direction: Forward Position #: 7 Overlap #: 21 Alignment: GGAGCASKMVBMSDVCACTGTGACACYAMMGT ------GGYGCTGTCCATGGTGCTGAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 23 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif CCACTGTGVTGTCACAGTGCTCCA CACTGTGRTRTCACAGTGSWSCACT CCMMYKKKGTKKYMMMRKKSYHCMACT Direction: Forward Position #: 3 Overlap #: 23 Alignment: CCACTGTGVTGTCACAGTGCTCCA----------------------------- --CACTGTGRTRTCACAGTGSWSCACT-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif CCMMYKKKGTKKYMMMRKKSYHCMACT AGTGCTCCACTGTGGTGTCACAGT AGTGCYCCACTGTGKTGTCACAKTSYHCMACT Direction: Forward Position #: 6 Overlap #: 19 Alignment: -----CCMMYKKKGTKKYMMMRKKSYHCMACT AGTGCTCCACTGTGGTGTCACAGT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement AGTGCYCCACTGTGKTGTCACAKTSYHCMACT BAGGYCABHBTGACCKHV AGTGCYCCABKBYRBBBTSACMKTSYHCMACT Direction: Forward Position #: 8 Overlap #: 18 Alignment: AGTGCYCCACTGTGKTGTCACAKTSYHCMACT -------BAGGYCABHBTGACCKHV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif AGTGCYCCABKBYRBBBTSACMKTSYHCMACT VDBHMAGGTCACCCTGACCY AGTGCYCCABKBYRBBBBVVCMDKGTCMMMCTGACCY Direction: Forward Position #: 18 Overlap #: 15 Alignment: AGTGCYCCABKBYRBBBTSACMKTSYHCMACT----- -----------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Reverse Complement MGGTCAGYRYGACYDRGBVVBVVMMVYBTGGMGCACT GGAGCACTGTGACACCACA RGRKCASTGTGACMBVRBVVBVVMMVYBTGGMGCACT Direction: Forward Position #: 1 Overlap #: 19 Alignment: MGGTCAGYRYGACYDRGBVVBVVMMVYBTGGMGCACT GGAGCACTGTGACACCACA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Original Motif Original Motif RGRKCASTGTGACMBVRBVVBVVMMVYBTGGMGCACT CAGTGCTCCACTGTGBT RGRKCASTGYKMCACHGTGDYVVMMVYBTGGMGCACT Direction: Forward Position #: 5 Overlap #: 17 Alignment: RGRKCASTGTGACMBVRBVVBVVMMVYBTGGMGCACT ----CAGTGCTCCACTGTGBT---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Original Motif Original Motif RGRKCASTGYKMCACHGTGDYVVMMVYBTGGMGCACT CAHCACAGTGGAGCACT RGRKCASTGCDMCACWGTGGWGCACDYBTGGMGCACT Direction: Forward Position #: 10 Overlap #: 17 Alignment: RGRKCASTGYKMCACHGTGDYVVMMVYBTGGMGCACT ---------CAHCACAGTGGAGCACT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Original Motif RGRKCASTGCDMCACWGTGGWGCACDYBTGGMGCACT YDRCCASYAGRKGGCRSYV RGRKCASTGCDMCACWGTGBDRCMMBYAKRGRGCACTV Direction: Forward Position #: 20 Overlap #: 18 Alignment: RGRKCASTGCDMCACWGTGGWGCACDYBTGGMGCACT- -------------------YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Reverse Complement BAGTGCMCMYTKBYRGMDBCACWGTGRDGCASTGYMCM TGRCCTKTGHCCKAB BAGTGCMCMYTKBYRGMDBCACWGTKGDSCWBTGBCCBAB Direction: Forward Position #: 26 Overlap #: 13 Alignment: BAGTGCMCMYTKBYRGMDBCACWGTGRDGCASTGYMCM-- -------------------------TGRCCTKTGHCCKAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Original Motif BTBGGBCAVWGSDCYACWGTGBDRCMMBYAKRGRGCACTV TTCAGCACCATGGACAGCKCC BTBGGBCAVWGSDCYACWKTSAGVMCCHYGGRSAGCRCYV Direction: Forward Position #: 19 Overlap #: 21 Alignment: BTBGGBCAVWGSDCYACWGTGBDRCMMBYAKRGRGCACTV ------------------TTCAGCACCATGGACAGCKCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 24 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk ESR1 Reverse Complement Reverse Complement BBSGGCGGGGBS MGGTCAGGGTGACCTRDBHV MGGTCAGBBKGRCSKGGBBV Direction: Backward Position #: 2 Overlap #: 12 Alignment: -------BBSGGCGGGGBS- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Original Motif MGGTCAGBBKGRCSKGGBBV YDRCCASYAGRKGGCRSYV HGGYCASBAGGGSGBGSBVV Direction: Forward Position #: 1 Overlap #: 19 Alignment: MGGTCAGBBKGRCSKGGBBV YDRCCASYAGRKGGCRSYV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Reverse Complement VVBSCBCSCCCTBSTGKCCD TGRCCTKTGHCCKAB VVBSYGVCCYYTGBYSKMBD Direction: Forward Position #: 5 Overlap #: 15 Alignment: VVBSCBCSCCCTBSTGKCCD ----TGRCCTKTGHCCKAB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement VVBSYGVCCYYTGBYSKMBD BAGGYCABHBTGACCKHV VVHGBBCMCBBTGVCCKHVD Direction: Forward Position #: 2 Overlap #: 18 Alignment: VVBSYGVCCYYTGBYSKMBD -BAGGYCABHBTGACCKHV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement HVHYGGBCABBGYGVBCHVV GGYGCTGTCCATGGTGCTGAA GGHVCTGKCCABGGTGCTSHVV Direction: Forward Position #: 3 Overlap #: 19 Alignment: --HVHYGGBCABBGYGVBCHVV GGYGCTGTCCATGGTGCTGAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sscCCCGCGcs Combined Motif Reverse Complement Original Motif VBHSAGCACCVTGGRCAGVDCC BSCCCCGCGBS VBHSAVCMCCVKSGVSAGVDCC Direction: Forward Position #: 6 Overlap #: 11 Alignment: VBHSAGCACCVTGGRCAGVDCC -----BSCCCCGCGBS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- gCGCGCsCgsG Combined Motif Original Motif Original Motif VBHSAVCMCCVKSGVSAGVDCC GCGCGCSCGCG VBHSAVCGCSCGCGVGAGVDCC Direction: Forward Position #: 6 Overlap #: 11 Alignment: VBHSAVCMCCVKSGVSAGVDCC -----GCGCGCSCGCG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCkTGCssk Reverse Complement Reverse Complement GGHVCTCVCGCGSGCGVTSHVV YSSGCAYGCSS BSBGCWYGCSSGSGCGVTSHVV Direction: Forward Position #: 1 Overlap #: 11 Alignment: GGHVCTCVCGCGSGCGVTSHVV YSSGCAYGCSS----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cCGCGGrCACG Combined Motif Original Motif Original Motif BSBGCWYGCSSGSGCGVTSHVV CCGCGGRCACG BSBGCHCGCGSRCRCGVTSHVV Direction: Forward Position #: 6 Overlap #: 11 Alignment: BSBGCWYGCSSGSGCGVTSHVV -----CCGCGGRCACG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Reverse Complement Original Motif VBHSAVCGMGMSCGCGDGCBSB VBBYCAAGGTCA VVBHCAASGHSASCGCGDGCBSB Direction: Forward Position #: 2 Overlap #: 11 Alignment: -VBHSAVCGMGMSCGCGDGCBSB VBBYCAAGGTCA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 25 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwCCAmAGTCmt CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif DDCCAMAGTCHB CACTGTGRTRTCACAGTGSWSCACT CACTGTGRHDYCACAGTSBWSCACT Direction: Backward Position #: 6 Overlap #: 12 Alignment: --------DDCCAMAGTCHB----- CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Reverse Complement Reverse Complement AGTGSWBSACTGTGKHHMCACAGTG ABCACAGTGGAGCACTG AGTGSABCACWGTGGAGCMMYRGTG Direction: Forward Position #: 6 Overlap #: 17 Alignment: AGTGSWBSACTGTGKHHMCACAGTG -----ABCACAGTGGAGCACTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Original Motif Original Motif AGTGSABCACWGTGGAGCMMYRGTG CAHCACAGTGGAGCACT AGTGCABCACWGTGGAGCAMYRGTG Direction: Forward Position #: 5 Overlap #: 17 Alignment: AGTGSABCACWGTGGAGCMMYRGTG ----CAHCACAGTGGAGCACT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AgTGCTCCACTGTGgTGTCACAgT Combined Motif Original Motif Original Motif AGTGCABCACWGTGGAGCAMYRGTG AGTGCTCCACTGTGGTGTCACAGT AGTGCWCCACWGTGGWGYMAYAGTG Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTGCABCACWGTGGAGCAMYRGTG AGTGCTCCACTGTGGTGTCACAGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Reverse Complement AGTGCWCCACWGTGGWGYMAYAGTG TGMYCTTTGBCCK AGTGCTSCACTKTGGHSBMAYAGTG Direction: Forward Position #: 6 Overlap #: 13 Alignment: AGTGCWCCACWGTGGWGYMAYAGTG -----TGMYCTTTGBCCK------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Original Motif AGTGCTSCACTKTGGHSBMAYAGTG TGGAGCACTGTGACAVCACAGTGG AGTGSWGCACTGTGRCABCACAGTGG Direction: Forward Position #: 3 Overlap #: 23 Alignment: AGTGCTSCACTKTGGHSBMAYAGTG- --TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement CCACTGTGBTGKCACAGTGCWSCACT GGYGCTGTCCATGGTGCTGAA GGYGCTGTCCAYKGTGCTGDMACAGTGCWSCACT Direction: Forward Position #: 9 Overlap #: 13 Alignment: --------CCACTGTGBTGKCACAGTGCWSCACT GGYGCTGTCCATGGTGCTGAA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Original Motif AGTGSWGCACTGTRDCAGCACYKTGGACAGCKCC TGTGGTGTCACAGTGCTCC TGTRGTGBMRCASTGYKBCAGCACYKTGGACAGCKCC Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---AGTGSWGCACTGTRDCAGCACYKTGGACAGCKCC TGTGGTGTCACAGTGCTCC------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif TGTRGTGBMRCASTGYKBCAGCACYKTGGACAGCKCC VDBHMAGGTCACCCTGACCY TGTRGTGBHVCAGKKCWBCMKSACCBTGGACAGCKCC Direction: Forward Position #: 7 Overlap #: 20 Alignment: TGTRGTGBMRCASTGYKBCAGCACYKTGGACAGCKCC ------VDBHMAGGTCACCCTGACCY----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Reverse Complement Original Motif GGYGCTGTCCAVGGTSRYGBWGYYCTGBDVCACMACA AAAGGTCAAAGGTCAAC GGMRMKGTCMAAGGTCAHSBWGYYCTGBDVCACMACA Direction: Forward Position #: 3 Overlap #: 17 Alignment: GGYGCTGTCCAVGGTSRYGBWGYYCTGBDVCACMACA --AAAGGTCAAAGGTCAAC------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 26 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement CAHCACAGTGGAGCACT ACTGTGACACCACAGTGGAGCACT ACTGTGACACCACAGTGGAGCACT Direction: Forward Position #: 8 Overlap #: 17 Alignment: -------CAHCACAGTGGAGCACT ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGAMAMCACAGTG AGTGCTSCACTGTGVYRTCACAGTG Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTGCTCCACTGTGGTGTCACAGT- AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement AGTGCTSCACTGTGVYRTCACAGTG GGYGCTGTCCATGGTGCTGAA GGHGYKSTCCAYKGTGCTGHMACAGTG Direction: Forward Position #: 3 Overlap #: 19 Alignment: --AGTGCTSCACTGTGVYRTCACAGTG GGYGCTGTCCATGGTGCTGAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Original Motif CACTGTRHCAGCACRKTGGASRKCHCC TGTGGTGTCACAGTGCTCC CACTGTGBYRKCACAGTGSWCVKCHCC Direction: Forward Position #: 4 Overlap #: 19 Alignment: CACTGTRHCAGCACRKTGGASRKCHCC ---TGTGGTGTCACAGTGCTCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Original Motif GGHGYVGWSCACTGTGRMMBCACAGTG YDRCCASYAGRKGGCRSYV GGHGBCCASCASKGKGMVVHVACAGTG Direction: Forward Position #: 3 Overlap #: 19 Alignment: GGHGYVGWSCACTGTGRMMBCACAGTG --YDRCCASYAGRKGGCRSYV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Original Motif GGHGBCCASCASKGKGMVVHVACAGTG TGGAGCACTGTGACAVCACAGTGG GGHGTSSAGCASTGTGACABCACAGTGG Direction: Forward Position #: 5 Overlap #: 23 Alignment: GGHGBCCASCASKGKGMVVHVACAGTG- ----TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Original Motif Reverse Complement GGHGTSSAGCASTGTGACABCACAGTGG ABCACAGTGGAGCACTG GGHGTSSASCACWGTGRARCMMYRGTGG Direction: Forward Position #: 8 Overlap #: 17 Alignment: GGHGTSSAGCASTGTGACABCACAGTGG -------ABCACAGTGGAGCACTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif GGHGTSSASCACWGTGRARCMMYRGTGG AMTGTGACACCACAGT AVKDTKRCACCACAGTGRARCMMYRGTGG Direction: Forward Position #: 2 Overlap #: 15 Alignment: -GGHGTSSASCACWGTGRARCMMYRGTGG AMTGTGACACCACAGT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwCCAmAGTCmt Reverse Complement Reverse Complement CCACKKYYGMTMCACTGTGGTGKYAHRVT VDGACTRTGGDD VVSACTGTKGHTMCACTGTGGTGKYAHRVT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -CCACKKYYGMTMCACTGTGGTGKYAHRVT VDGACTRTGGDD------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Original Motif AVKDTKRCACCACAGTGRAHCYACAGTSVB RGGBCAAAGKYCA AVKDTKRSRBCAMAGTGVAHCYACAGTSVB Direction: Forward Position #: 7 Overlap #: 13 Alignment: AVKDTKRCACCACAGTGRAHCYACAGTSVB ------RGGBCAAAGKYCA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 27 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AgTGCTCCACTGTGgTGTCACAgT CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGAMAMCACAGTG ARKKGMKCMMYKKKRVWVYMMMRKK Direction: Forward Position #: 2 Overlap #: 24 Alignment: -AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement ARKKGMKCMMYKKKRVWVYMMMRKK CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVTGTCAMAGTGCTCCAYKKKRVWVYMMMRKK Direction: Forward Position #: 15 Overlap #: 10 Alignment: --------------ARKKGMKCMMYKKKRVWVYMMMRKK CCACTGTGVTGTCACAGTGCTCCA--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement CCACTGTGVTGTCAMAGTGCTCCAYKKKRVWVYMMMRKK GGYGCTGTCCATGGTGCTGAA GGYGCTGTCCAYKGTGCTGWMAMAGTGCTCCAYKKKRVWVYMMMRKK Direction: Forward Position #: 9 Overlap #: 13 Alignment: --------CCACTGTGVTGTCAMAGTGCTCCAYKKKRVWVYMMMRKK GGYGCTGTCCATGGTGCTGAA-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement GGYGCTGTCCAYKGTGCTGWMAMAGTGCTCCAYKKKRVWVYMMMRKK GGAGCACTGTGACACCACA GGYGCTGTCCAYKGTGCTGWMAMAGKGMKCMMTGTGACASYAMARKK Direction: Forward Position #: 26 Overlap #: 19 Alignment: GGYGCTGTCCAYKGTGCTGWMAMAGTGCTCCAYKKKRVWVYMMMRKK -------------------------GGAGCACTGTGACACCACA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement GGYGCTGTCCAYKGTGCTGWMAMAGKGMKCMMTGTGACASYAMARKK BMSMGCCYMCTKSTGGMHM GGYGCTGTCCAYKGTGCTGWMAMVVGSCBCCYTGTGRCHVYAMARKK Direction: Forward Position #: 22 Overlap #: 19 Alignment: GGYGCTGTCCAYKGTGCTGWMAMAGKGMKCMMTGTGACASYAMARKK ---------------------BMSMGCCYMCTKSTGGMHM------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Original Motif Original Motif GGYGCTGTCCAYKGTGCTGWMAMVVGSCBCCYTGTGRCHVYAMARKK CAHCACAGTGGAGCACT GGYGCTSWCCACWGTGSWGHMHHVVGSCBCCYTGTGRCHVYAMARKK Direction: Forward Position #: 7 Overlap #: 17 Alignment: GGYGCTGTCCAYKGTGCTGWMAMVVGSCBCCYTGTGRCHVYAMARKK ------CAHCACAGTGGAGCACT------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Original Motif Original Motif GGYGCTSWCCACWGTGSWGHMHHVVGSCBCCYTGTGRCHVYAMARKK CAGTGCTCCACTGTGBT GGYGCTSWCCACAGTGCTSCACTGTGBYBCCYTGTGRCHVYAMARKK Direction: Forward Position #: 12 Overlap #: 17 Alignment: GGYGCTSWCCACWGTGSWGHMHHVVGSCBCCYTGTGRCHVYAMARKK -----------CAGTGCTCCACTGTGBT------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif GGYGCTSWCCACAGTGCTSCACTGTGBYBCCYTGTGRCHVYAMARKK AMTGTGACACCACAGT AVKBKSWCACCACAGTGCTSCACTGTGBYBCCYTGTGRCHVYAMARKK Direction: Forward Position #: 2 Overlap #: 15 Alignment: -GGYGCTSWCCACAGTGCTSCACTGTGBYBCCYTGTGRCHVYAMARKK AMTGTGACACCACAGT-------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif AVKBKSWCACCACAGTGCTSCACTGTGBYBCCYTGTGRCHVYAMARKK VDBHMAGGTCACCCTGACCY AVKBKSWCACCACAGTGCTSCACTGTGBYBCCHDBBVRSVBCACMVTGACCY Direction: Forward Position #: 33 Overlap #: 16 Alignment: AVKBKSWCACCACAGTGCTSCACTGTGBYBCCYTGTGRCHVYAMARKK---- --------------------------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement AVKBKSWCACCACAGTGCTSCACTGTGBYBCCHDBBVRSVBCACMVTGACCY BAGGYCABHBTGACCKHV AVKBKSWCACCACAGTGCTSCACTGTGBYBCCHDBBVAGGHCAHHVTGACCTHV Direction: Forward Position #: 37 Overlap #: 16 Alignment: AVKBKSWCACCACAGTGCTSCACTGTGBYBCCHDBBVRSVBCACMVTGACCY-- ------------------------------------BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 28 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGCkTGCssk gCGCGCsCgsG Original Motif Original Motif SSGCKTGCSSK GCGCGCSCGCG SCGCGYGCSSG Direction: Backward Position #: 1 Overlap #: 11 Alignment: SSGCKTGCSSK GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCCCCGCSssk Reverse Complement Original Motif CSSGCKCGCGS SBCCCCGCCSBB SBCCCCGCCSSGCKCGCGS Direction: Forward Position #: 9 Overlap #: 4 Alignment: --------CSSGCKCGCGS SBCCCCGCCSBB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sscCCCGCGcs Combined Motif Original Motif Reverse Complement SBCCCCGCCSSGCKCGCGS SBCGCGGGGSB SBCCSCGCSGSGSKCGCGS Direction: Forward Position #: 4 Overlap #: 11 Alignment: SBCCCCGCCSSGCKCGCGS ---SBCGCGGGGSB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cCGCGGrCACG Combined Motif Original Motif Original Motif SBCCSCGCSGSGSKCGCGS CCGCGGRCACG SBCCCCGCGGRSVSSGCGS Direction: Forward Position #: 5 Overlap #: 11 Alignment: SBCCSCGCSGSGSKCGCGS ----CCGCGGRCACG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Reverse Complement SCGCSSBSMCCGCGGGGBS BMSMGCCYMCTKSTGGMHM BVGCGCCBMCYGCKGGVBV Direction: Forward Position #: 1 Overlap #: 19 Alignment: SCGCSSBSMCCGCGGGGBS BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Reverse Complement Reverse Complement VBVCCYGCMGRBGGCGCVB TGACCTTGMBBB TGACCTKSMGVBGGCGCVB Direction: Forward Position #: 1 Overlap #: 12 Alignment: VBVCCYGCMGRBGGCGCVB TGACCTTGMBBB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement BVGCGCCBVCYSRAGGTCA BAGGYCABHBTGACCKHV BMGSBCMBVBTGAMSGHVA Direction: Forward Position #: 1 Overlap #: 18 Alignment: BVGCGCCBVCYSRAGGTCA BAGGYCABHBTGACCKHV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Reverse Complement BMGSBCMBVBTGAMSGHVA GGYGCTGTCCATGGTGCTGAA BMGSBSVHVCTGWCCDTGGTGCTGAA Direction: Forward Position #: 6 Overlap #: 14 Alignment: BMGSBCMBVBTGAMSGHVA------- -----GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement BMGSBSVHVCTGWCCDTGGTGCTGAA TGRCCTKTGHCCKAB BMGSTGVCCYTKDCCVKVVTGCTGAA Direction: Forward Position #: 5 Overlap #: 15 Alignment: BMGSBSVHVCTGWCCDTGGTGCTGAA ----TGRCCTKTGHCCKAB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Original Motif TTCAGCAVVRVGGHRAMGGBCASCYB RGGBCAAAGKYCA TTCAGCAVVRGGBCAAAGKBCASCYB Direction: Forward Position #: 10 Overlap #: 13 Alignment: TTCAGCAVVRVGGHRAMGGBCASCYB ---------RGGBCAAAGKYCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 29 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cCGCGGrCACG gCGCGCsCgsG Original Motif Original Motif CCGCGGRCACG GCGCGCSCGCG SCGCGSRCRCG Direction: Backward Position #: 1 Overlap #: 11 Alignment: CCGCGGRCACG GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif CGKGMSCGCGS TTCAGCACCATGGACAGCKCC TTCAGCACCMBGGASMGCGSC Direction: Forward Position #: 10 Overlap #: 11 Alignment: ---------CGKGMSCGCGS- TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement TTCAGCACCMBGGASMGCGSC MGGTCAGGGTGACCTRDBHV TTCRGYMMCVBKGACCKVGBCV Direction: Forward Position #: 3 Overlap #: 19 Alignment: TTCAGCACCMBGGASMGCGSC- --MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCkTGCssk Reverse Complement Reverse Complement VGBCVYGGTCRBVGRYKCKGAA YSSGCAYGCSS YSSGCABGCSSYGGTCRBVGRYKCKGAA Direction: Forward Position #: 7 Overlap #: 5 Alignment: ------VGBCVYGGTCRBVGRYKCKGAA YSSGCAYGCSS----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk Combined Motif Reverse Complement Reverse Complement TTCRGYMMCVBKGACCKSSGCBTGCSSK BBSGGCGGGGBS TTCRGYMMBBSKGMSSGGSSCBTGCSSK Direction: Forward Position #: 9 Overlap #: 12 Alignment: TTCRGYMMCVBKGACCKSSGCBTGCSSK --------BBSGGCGGGGBS-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Reverse Complement YSSGCABGSSCCSSRCYSBBRYKCKGAA BMSMGCCYMCTKSTGGMHM YSSGCAHGCGCCBCSYBSBGGYBCKGAA Direction: Forward Position #: 6 Overlap #: 19 Alignment: YSSGCABGSSCCSSRCYSBBRYKCKGAA -----BMSMGCCYMCTKSTGGMHM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif YSSGCAHGCGCCBCSYBSBGGYBCKGAA BTRGGDCARAGGKCA YSSGCAHGCGCCBCSYBSTGGBBCWRARGKCA Direction: Forward Position #: 18 Overlap #: 11 Alignment: YSSGCAHGCGCCBCSYBSBGGYBCKGAA---- -----------------BTRGGDCARAGGKCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sscCCCGCGcs Combined Motif Reverse Complement Original Motif TGRCMTMWGBBCCASBMSGBGGCGCDTGCSSK BSCCCCGCGBS TGRCMTMWGBBCCASBMSGBGSCSCGCGCSSK Direction: Forward Position #: 20 Overlap #: 11 Alignment: TGRCMTMWGBBCCASBMSGBGGCGCDTGCSSK -------------------BSCCCCGCGBS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement YSSGCGCGSGSCBCSYBSTGGBBCWRARGKCA BAGGYCABHBTGACCKHV YSSGCGCGSGSCBCSYBSBRGGBCAVVVKGMMCKHV Direction: Forward Position #: 19 Overlap #: 14 Alignment: YSSGCGCGSGSCBCSYBSTGGBBCWRARGKCA---- ------------------BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Reverse Complement Original Motif VHRGRYCRVBVTGVCCKVSBMSGBGSCSCGCGCSSK VGCACGTGGH VHRGRYCRVBVHGCMCGHGGMSGBGSCSCGCGCSSK Direction: Forward Position #: 12 Overlap #: 10 Alignment: VHRGRYCRVBVTGVCCKVSBMSGBGSCSCGCGCSSK -----------VGCACGTGGH--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 30 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- taaacgatgcc NR1H2RXRA Original Motif Reverse Complement TAAACGATGCC GTTGACCTTTGACCTTT GTTGWMMWYKRWSCYTT Direction: Backward Position #: 3 Overlap #: 11 Alignment: ----TAAACGATGCC-- GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Original Motif GTTGWMMWYKRWSCYTT TGAMCTTTGMMCYT TGAMCTTKDMMHYKRWSCYTT Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----GTTGWMMWYKRWSCYTT TGAMCTTTGMMCYT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif atactttggc Original Motif Original Motif TGAMCTTKDMMHYKRWSCYTT ATACTTTGGC ATACTTTGRCCTTKDMMHYKRWSCYTT Direction: Forward Position #: 7 Overlap #: 4 Alignment: ------TGAMCTTKDMMHYKRWSCYTT ATACTTTGGC----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ctatacggacg Original Motif Original Motif ATACTTTGRCCTTKDMMHYKRWSCYTT CTATACGGACG CTATACKKWSGCCTTKDMMHYKRWSCYTT Direction: Forward Position #: 3 Overlap #: 9 Alignment: --ATACTTTGRCCTTKDMMHYKRWSCYTT CTATACGGACG------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif AAKGSWKRKDYYHYAAGGCSWYYGTATAG AGTGCTCCACTGTGGTGTCACAGT AGTGCTCCACTGTGGTGTCAMAKKSWKRKDYYHYAAGGCSWYYGTATAG Direction: Forward Position #: 21 Overlap #: 4 Alignment: --------------------AAKGSWKRKDYYHYAAGGCSWYYGTATAG AGTGCTCCACTGTGGTGTCACAGT------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif AGTGCTCCACTGTGGTGTCAMAKKSWKRKDYYHYAAGGCSWYYGTATAG AMTGTGACACCACAGT AVTGYKMCACYRYRGTGTCAMAKKSWKRKDYYHYAAGGCSWYYGTATAG Direction: Forward Position #: 1 Overlap #: 16 Alignment: AGTGCTCCACTGTGGTGTCAMAKKSWKRKDYYHYAAGGCSWYYGTATAG AMTGTGACACCACAGT--------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cCGCGGrCACG Combined Motif Original Motif Reverse Complement AVTGYKMCACYRYRGTGTCAMAKKSWKRKDYYHYAAGGCSWYYGTATAG CGTGKCCGCGG AVTGYKMCACYRYVGTGTCMSMGKSWKRKDYYHYAAGGCSWYYGTATAG Direction: Forward Position #: 14 Overlap #: 11 Alignment: AVTGYKMCACYRYRGTGTCAMAKKSWKRKDYYHYAAGGCSWYYGTATAG -------------CGTGKCCGCGG------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif srACyCCGAyr Original Motif Reverse Complement AVTGYKMCACYRYVGTGTCMSMGKSWKRKDYYHYAAGGCSWYYGTATAG KKTCGGKGTKS KKTCRGTGTKVCACYRYVGTGTCMSMGKSWKRKDYYHYAAGGCSWYYGTATAG Direction: Forward Position #: 5 Overlap #: 7 Alignment: ----AVTGYKMCACYRYVGTGTCMSMGKSWKRKDYYHYAAGGCSWYYGTATAG KKTCGGKGTKS------------------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Original Motif Original Motif KKTCRGTGTKVCACYRYVGTGTCMSMGKSWKRKDYYHYAAGGCSWYYGTATAG YDRCCASYAGRKGGCRSYV YDRCCASYAGRKGKCRSTGTKVCACYRYVGTGTCMSMGKSWKRKDYYHYAAGGCSWYYGTATAG Direction: Forward Position #: 12 Overlap #: 8 Alignment: -----------KKTCRGTGTKVCACYRYVGTGTCMSMGKSWKRKDYYHYAAGGCSWYYGTATAG YDRCCASYAGRKGGCRSYV--------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Reverse Complement Original Motif CTATACKKWSGCCTTKDMMHYKYWSYCRSRGACACVMKMGTGVRACASMGRCYMCTKSTGGMHM CAGTGCTCCACTGTGBT CAGTGCTMYACTGTGGYCTTKDMMHYKYWSYCRSRGACACVMKMGTGVRACASMGRCYMCTKSTGGMHM Direction: Forward Position #: 6 Overlap #: 12 Alignment: -----CTATACKKWSGCCTTKDMMHYKYWSYCRSRGACACVMKMGTGVRACASMGRCYMCTKSTGGMHM CAGTGCTCCACTGTGBT---------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 31 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ctatacggacg srACyCCGAyr Original Motif Original Motif CTATACGGACG SRACYCCGAYR CDAYHCSGACG Direction: Forward Position #: 1 Overlap #: 11 Alignment: CTATACGGACG SRACYCCGAYR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif taaacgatgcc Original Motif Original Motif CDAYHCSGACG TAAACGATGCC TAAACGATDCCGACG Direction: Forward Position #: 5 Overlap #: 7 Alignment: ----CDAYHCSGACG TAAACGATGCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Reverse Complement Original Motif CGTCGGHATCGTTTA BAACGTCCGC BAACGTCSGCATCGTTTA Direction: Forward Position #: 4 Overlap #: 7 Alignment: ---CGTCGGHATCGTTTA BAACGTCCGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif atactttggc Original Motif Original Motif BAACGTCSGCATCGTTTA ATACTTTGGC ATACKTYGGCATCGTTTA Direction: Forward Position #: 1 Overlap #: 10 Alignment: BAACGTCSGCATCGTTTA ATACTTTGGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cCGCGGrCACG Reverse Complement Original Motif TAAACGATGCCMARGTAT CCGCGGRCACG CCGCGKAMACGATGCCMARGTAT Direction: Forward Position #: 6 Overlap #: 6 Alignment: -----TAAACGATGCCMARGTAT CCGCGGRCACG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCkTGCssk Original Motif Original Motif CCGCGKAMACGATGCCMARGTAT SSGCKTGCSSK SCGCGTRCVCKATGCCMARGTAT Direction: Forward Position #: 1 Overlap #: 11 Alignment: CCGCGKAMACGATGCCMARGTAT SSGCKTGCSSK------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- gCGCGCsCgsG Combined Motif Original Motif Original Motif SCGCGTRCVCKATGCCMARGTAT GCGCGCSCGCG SCGCGYGCSCGMKGCCMARGTAT Direction: Forward Position #: 3 Overlap #: 11 Alignment: SCGCGTRCVCKATGCCMARGTAT --GCGCGCSCGCG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk Combined Motif Reverse Complement Reverse Complement ATACKTYGGCRYCGSGCKCGCGS BBSGGCGGGGBS ATACKTYGGSGCSGGGCKCGCGS Direction: Forward Position #: 7 Overlap #: 12 Alignment: ATACKTYGGCRYCGSGCKCGCGS ------BBSGGCGGGGBS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Reverse Complement Reverse Complement SCGCGYGCCCSGCSCCKARGTAT DCCACGTGCV DCCRCGTGCVCSGCSCCKARGTAT Direction: Forward Position #: 2 Overlap #: 9 Alignment: -SCGCGYGCCCSGCSCCKARGTAT DCCACGTGCV-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement DCCRCGTGCVCSGCSCCKARGTAT GCCACGTGSD GCCACGTGCVCSGCSCCKARGTAT Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCRCGTGCVCSGCSCCKARGTAT GCCACGTGSD-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 32 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- gCGCGCsCgsG cCGCGGrCACG Original Motif Original Motif GCGCGCSCGCG CCGCGGRCACG SCGCGSRCRCG Direction: Backward Position #: 1 Overlap #: 11 Alignment: GCGCGCSCGCG CCGCGGRCACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCkTGCssk Reverse Complement Reverse Complement CGKGMSCGCGS YSSGCAYGCSS CSBGCRCGCGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: CGKGMSCGCGS YSSGCAYGCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Original Motif Reverse Complement CSBGCRCGCGS SBCGCGGGGSB CSCGCGSGSGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: CSBGCRCGCGS SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCCCCGCSssk Original Motif Original Motif CSCGCGSGSGS SBCCCCGCCSBB SBCCCCGCCSSGCGSGSGS Direction: Forward Position #: 9 Overlap #: 4 Alignment: --------CSCGCGSGSGS SBCCCCGCCSBB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement SBCCCCGCCSSGCGSGSGS BMSMGCCYMCTKSTGGMHM BVCCSCSCCCTGSDGGCBV Direction: Forward Position #: 1 Overlap #: 19 Alignment: SBCCCCGCCSSGCGSGSGS BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement VBGCCDSCAGGGSGSGGVB MGGTCAGGGTGACCTRDBHV MGGTCAGGGTGACCTVBVCCDSCAGGGSGSGGVB Direction: Forward Position #: 16 Overlap #: 5 Alignment: ---------------VBGCCDSCAGGGSGSGGVB MGGTCAGGGTGACCTRDBHV-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Reverse Complement Original Motif BVCCSCSCCCTGSDGGVBVAGGTCACCCTGACCY BAACGTCCGC BHMCGYCCSCTGSDGGVBVAGGTCACCCTGACCY Direction: Forward Position #: 1 Overlap #: 10 Alignment: BVCCSCSCCCTGSDGGVBVAGGTCACCCTGACCY BAACGTCCGC------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Original Motif Original Motif BHMCGYCCSCTGSDGGVBVAGGTCACCCTGACCY VGCACGTGGH BHMCGYCCSCTGSDVGCACRKGKCACCCTGACCY Direction: Forward Position #: 15 Overlap #: 10 Alignment: BHMCGYCCSCTGSDGGVBVAGGTCACCCTGACCY --------------VGCACGTGGH---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Combined Motif Original Motif Original Motif BHMCGYCCSCTGSDVGCACRKGKCACCCTGACCY HSCACGTGGC BHMCGYCCSCTGSDVSCACGTGGCACCCTGACCY Direction: Forward Position #: 15 Overlap #: 10 Alignment: BHMCGYCCSCTGSDVGCACRKGKCACCCTGACCY --------------HSCACGTGGC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ctatacggacg Combined Motif Reverse Complement Reverse Complement MGGTCAGGGTGCCACGTGSVDSCAGSGGMCGYHV CGTCCGTATAG MGGTCAGGGTGCCACGTGSVDSCAGSGGMCGTCCGTATAG Direction: Forward Position #: 30 Overlap #: 5 Alignment: MGGTCAGGGTGCCACGTGSVDSCAGSGGMCGYHV------ -----------------------------CGTCCGTATAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 33 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- srACyCCGAyr ESR1 Reverse Complement Reverse Complement KKTCGGKGTKS MGGTCAGGGTGACCTRDBHV MKGTCRGKGTGVCCTRDBHV Direction: Forward Position #: 2 Overlap #: 11 Alignment: -KKTCGGKGTKS-------- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement MKGTCRGKGTGVCCTRDBHV CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVKGTCASDGTGCYCYADBHV Direction: Forward Position #: 9 Overlap #: 16 Alignment: --------MKGTCRGKGTGVCCTRDBHV CCACTGTGVTGTCACAGTGCTCCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif CCACTGTGVKGTCASDGTGCYCYADBHV VHRGGTCABDBTGMCCTB CCACTGTDRKGTCASDGTGMYCYVDBHV Direction: Forward Position #: 7 Overlap #: 18 Alignment: CCACTGTGVKGTCASDGTGCYCYADBHV ------VHRGGTCABDBTGMCCTB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Original Motif CCACTGTDRKGTCASDGTGMYCYVDBHV TGTGGTGTCACAGTGCTCC CCACTGTGGTGTCACAGTGCYCCVDBHV Direction: Forward Position #: 5 Overlap #: 19 Alignment: CCACTGTDRKGTCASDGTGMYCYVDBHV ----TGTGGTGTCACAGTGCTCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Reverse Complement VDBHBGGMGCACTGTGACACCACAGTGG AGTGSWSCACTGTGAMAMCACAGTG VDVBTGGAGCACTGTGACAMCACAGTGG Direction: Forward Position #: 3 Overlap #: 25 Alignment: VDBHBGGMGCACTGTGACACCACAGTGG --AGTGSWSCACTGTGAMAMCACAGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement CCACTGTGRTGTCACAGTGCTCCABBHV GGYGCTGTCCATGGTGCTGAA GGYGCTGTCCAYKGTGCTGWMACAGTGCTCCABBHV Direction: Forward Position #: 9 Overlap #: 13 Alignment: --------CCACTGTGRTGTCACAGTGCTCCABBHV GGYGCTGTCCATGGTGCTGAA--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-20-2016 21:11:03 Runtime: 725.149 seconds MOTIFSIM is written by Ngoc Tam L. 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