**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.1 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Phylogenetic tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # PScanChIP_DM05.txt 16 1 RSAT_peak-motifs_DM05.txt 17 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ************************************************************ Combined Motifs for Top Global Significant Motif ID 5 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ZEB1 AmTGTGACACCACAGT Original Motif Original Motif CACCTD AMTGTGACACCACAGT AMTGTGACACCWBAGT Direction: Backward Position #: 4 Overlap #: 6 Alignment: -------CACCTD--- AMTGTGACACCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Reverse Complement ACTBWGGTGTCACART GGAGCACTGTGACACCACA RSWGHRSTGTSACAVYACA Direction: Forward Position #: 1 Overlap #: 16 Alignment: ACTBWGGTGTCACART--- GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement RSWGHRSTGTSACAVYACA ACTGTGACACCACAGTGGAGCACT ASTGTGAYRYCACAGTRSAGCACT Direction: Forward Position #: 1 Overlap #: 19 Alignment: RSWGHRSTGTSACAVYACA----- ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif srACyCCGAyr Original Motif Original Motif ASTGTGAYRYCACAGTRSAGCACT SRACYCCGAYR SRACTSYGAYRYCACAGTRSAGCACT Direction: Forward Position #: 3 Overlap #: 9 Alignment: --ASTGTGAYRYCACAGTRSAGCACT SRACYCCGAYR--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement SRACTSYGAYRYCACAGTRSAGCACT CCACTGTGVTGTCACAGTGCTCCA SVACTGTGRTGTCACAGTGCWSCACT Direction: Forward Position #: 1 Overlap #: 24 Alignment: SRACTSYGAYRYCACAGTRSAGCACT CCACTGTGVTGTCACAGTGCTCCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Reverse Complement AGTGSWGCACTGTGACAKCACAGTVS AGTGCTCCACTGTGDTG AGTGCTSCACTGTGVYRKCACAGTVS Direction: Forward Position #: 1 Overlap #: 17 Alignment: AGTGSWGCACTGTGACAKCACAGTVS AGTGCTCCACTGTGDTG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- atactttggc Combined Motif Original Motif Original Motif AGTGCTSCACTGTGVYRKCACAGTVS ATACTTTGGC AGTGCTMYACTKTGGCRKCACAGTVS Direction: Forward Position #: 7 Overlap #: 10 Alignment: AGTGCTSCACTGTGVYRKCACAGTVS ------ATACTTTGGC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Reverse Complement AGTGCTMYACTKTGGCRKCACAGTVS AGTGSWSCACTGTGAMAMCACAGTG AGTGSWVCACTGTGRCAHCACAGTGS Direction: Forward Position #: 1 Overlap #: 25 Alignment: AGTGCTMYACTKTGGCRKCACAGTVS AGTGSWSCACTGTGAMAMCACAGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCCCCGCSssk Reverse Complement Original Motif SCACTGTGDTGKCACAGTGVWSCACT SBCCCCGCCSBB SSCMCYGYSBBGKCACAGTGVWSCACT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -SCACTGTGDTGKCACAGTGVWSCACT SBCCCCGCCSBB--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Reverse Complement Original Motif AGTGSWVCACTGTGRCVBSKCKGRGSS CAGTGCTCCACTGTGBT CAGTGCTCCACTGTGVYVBSKCKGRGSS Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AGTGSWVCACTGTGRCVBSKCKGRGSS CAGTGCTCCACTGTGBT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 6 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn sscCCCGCGcs Reverse Complement Original Motif GCCACGTGSD BSCCCCGCGBS BSCCMCGYGSV Direction: Backward Position #: 1 Overlap #: 10 Alignment: -GCCACGTGSD BSCCCCGCGBS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCCCCGCSssk Reverse Complement Original Motif VSCKCGRGGSB SBCCCCGCCSBB SBCCCCGCCSCKCGRGGSB Direction: Forward Position #: 9 Overlap #: 4 Alignment: --------VSCKCGRGGSB SBCCCCGCCSBB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement BSCCMCGYGSGGCGGGGBS AGTGSWSCACTGTGAMAMCACAGTG AGTGSWSCACTGTGAMMVCMCMGTGSGGCGGGGBS Direction: Forward Position #: 17 Overlap #: 9 Alignment: ----------------BSCCMCGYGSGGCGGGGBS AGTGSWSCACTGTGAMAMCACAGTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif AGTGSWSCACTGTGAMMVCMCMGTGSGGCGGGGBS CAGTGCTCCACTGTGBT CAGTGCTSCACTGTGVYMVCMCMGTGSGGCGGGGBS Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AGTGSWSCACTGTGAMMVCMCMGTGSGGCGGGGBS CAGTGCTCCACTGTGBT------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement CAGTGCTSCACTGTGVYMVCMCMGTGSGGCGGGGBS ACTGTGACACCACAGTGGAGCACT ACYRKKRCWCCACWGTGGAGCMMYMGTGSGGCGGGGBS Direction: Forward Position #: 3 Overlap #: 22 Alignment: --CAGTGCTSCACTGTGVYMVCMCMGTGSGGCGGGGBS ACTGTGACACCACAGTGGAGCACT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement ACYRKKRCWCCACWGTGGAGCMMYMGTGSGGCGGGGBS CCACTGTGVTGTCACAGTGCTCCA CCACTGTGRYRYCACAGTGSWSCAMYMGTGSGGCGGGGBS Direction: Forward Position #: 3 Overlap #: 22 Alignment: --ACYRKKRCWCCACWGTGGAGCMMYMGTGSGGCGGGGBS CCACTGTGVTGTCACAGTGCTCCA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Original Motif Original Motif CCACTGTGRYRYCACAGTGSWSCAMYMGTGSGGCGGGGBS CAHCACAGTGGAGCACT CACCACWGTGGHGYMMYAGTGSWSCAMYMGTGSGGCGGGGBS Direction: Forward Position #: 3 Overlap #: 15 Alignment: --CCACTGTGRYRYCACAGTGSWSCAMYMGTGSGGCGGGGBS CAHCACAGTGGAGCACT------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- gCGCGCsCgsG Combined Motif Original Motif Original Motif CACCACWGTGGHGYMMYAGTGSWSCAMYMGTGSGGCGGGGBS GCGCGCSCGCG CACCACWGTGGHGYMMYAGTGSYGCRCBCGYGSGGCGGGGBS Direction: Forward Position #: 22 Overlap #: 11 Alignment: CACCACWGTGGHGYMMYAGTGSWSCAMYMGTGSGGCGGGGBS ---------------------GCGCGCSCGCG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement CACCACWGTGGHGYMMYAGTGSYGCRCBCGYGSGGCGGGGBS GGAGCACTGTGACACCACA CACCACWGTGGHGBAVCASTGTGRCACCMSHGSGGCGGGGBS Direction: Forward Position #: 13 Overlap #: 19 Alignment: CACCACWGTGGHGYMMYAGTGSYGCRCBCGYGSGGCGGGGBS ------------GGAGCACTGTGACACCACA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCkTGCssk Reverse Complement Original Motif SBCCCCGCCSCHSYGGTGKCACASTGVTBCHCCACWGTGGTG SSGCKTGCSSK SSSCBYGCSSBHSYGGTGKCACASTGVTBCHCCACWGTGGTG Direction: Forward Position #: 1 Overlap #: 11 Alignment: SBCCCCGCCSCHSYGGTGKCACASTGVTBCHCCACWGTGGTG SSGCKTGCSSK------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 8 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc sscCCCGCGcs Reverse Complement Original Motif DCCACGTGCV BSCCCCGCGBS BVCCMCGYGCV Direction: Backward Position #: 1 Overlap #: 10 Alignment: -DCCACGTGCV BSCCCCGCGBS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCCCCGCSssk Reverse Complement Original Motif VGCKCGRGGVB SBCCCCGCCSBB SBCCCCGCCSCKCGRGGVB Direction: Forward Position #: 9 Overlap #: 4 Alignment: --------VGCKCGRGGVB SBCCCCGCCSBB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement BVCCMCGYGSGGCGGGGBS AGTGSWSCACTGTGAMAMCACAGTG AGTGSWSCACTGTGAMMVCMCMGTGSGGCGGGGBS Direction: Forward Position #: 17 Overlap #: 9 Alignment: ----------------BVCCMCGYGSGGCGGGGBS AGTGSWSCACTGTGAMAMCACAGTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif AGTGSWSCACTGTGAMMVCMCMGTGSGGCGGGGBS CAGTGCTCCACTGTGBT CAGTGCTSCACTGTGVYMVCMCMGTGSGGCGGGGBS Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AGTGSWSCACTGTGAMMVCMCMGTGSGGCGGGGBS CAGTGCTCCACTGTGBT------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif CAGTGCTSCACTGTGVYMVCMCMGTGSGGCGGGGBS TGGAGCACTGTGACAVCACAGTGG TGGAGCACYRKKRCWCCACWGTGVYMVCMCMGTGSGGCGGGGBS Direction: Forward Position #: 9 Overlap #: 16 Alignment: --------CAGTGCTSCACTGTGVYMVCMCMGTGSGGCGGGGBS TGGAGCACTGTGACAVCACAGTGG-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwCCAmAGTCmt Original Motif Reverse Complement TGGAGCACYRKKRCWCCACWGTGVYMVCMCMGTGSGGCGGGGBS VDGACTRTGGDD VDGACTRTGGAGCACYRKKRCWCCACWGTGVYMVCMCMGTGSGGCGGGGBS Direction: Forward Position #: 8 Overlap #: 5 Alignment: -------TGGAGCACYRKKRCWCCACWGTGVYMVCMCMGTGSGGCGGGGBS VDGACTRTGGDD--------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Original Motif Original Motif VDGACTRTGGAGCACYRKKRCWCCACWGTGVYMVCMCMGTGSGGCGGGGBS CAHCACAGTGGAGCACT CAVSACWGTGGAGCACTRKKRCWCCACWGTGVYMVCMCMGTGSGGCGGGGBS Direction: Forward Position #: 2 Overlap #: 16 Alignment: -VDGACTRTGGAGCACYRKKRCWCCACWGTGVYMVCMCMGTGSGGCGGGGBS CAHCACAGTGGAGCACT----------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AgTGCTCCACTGTGgTGTCACAgT Combined Motif Original Motif Reverse Complement CAVSACWGTGGAGCACTRKKRCWCCACWGTGVYMVCMCMGTGSGGCGGGGBS ACTGTGACACCACAGTGGAGCACT CAVSACWGTGGAGCACTGTGACACCACAGTGGAGCMMYMGTGSGGCGGGGBS Direction: Forward Position #: 15 Overlap #: 24 Alignment: CAVSACWGTGGAGCACTRKKRCWCCACWGTGVYMVCMCMGTGSGGCGGGGBS --------------ACTGTGACACCACAGTGGAGCACT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- gCGCGCsCgsG Combined Motif Reverse Complement Reverse Complement SBCCCCGCCSCACYKRYGCTCCACTGTGGTGTCACAGTGCTCCACWGTSVTG CGCGSGCGCGC SBCCCCGCCSCVCBBGCGCKCCACTGTGGTGTCACAGTGCTCCACWGTSVTG Direction: Forward Position #: 11 Overlap #: 11 Alignment: SBCCCCGCCSCACYKRYGCTCCACTGTGGTGTCACAGTGCTCCACWGTSVTG ----------CGCGSGCGCGC------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement SBCCCCGCCSCVCBBGCGCKCCACTGTGGTGTCACAGTGCTCCACWGTSVTG GGAGCACTGTGACACCACA SBCCCCGCCSCVCBBGCGSDSCACTGTGRYRYCACAGTGCTCCACWGTSVTG Direction: Forward Position #: 18 Overlap #: 19 Alignment: SBCCCCGCCSCVCBBGCGCKCCACTGTGGTGTCACAGTGCTCCACWGTSVTG -----------------GGAGCACTGTGACACCACA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 11 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR4A2 CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif AAGGTCAC CACTGTGRTRTCACAGTGSWSCACT CACTGTRAKGTCACAGTGSWSCACT Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------AAGGTCAC----------- CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Reverse Complement Original Motif AGTGSWSCACTGTGACYTMACAGTG TGGAGCACTGTGACAVCACAGTGG AGTGGAGCACTGTGACHBCACAGTGG Direction: Forward Position #: 3 Overlap #: 23 Alignment: AGTGSWSCACTGTGACYTMACAGTG- --TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif AGTGGAGCACTGTGACHBCACAGTGG AMTGTGACACCACAGT AMTRKKRSASCACWGTGACHBCACAGTGG Direction: Forward Position #: 4 Overlap #: 13 Alignment: ---AGTGGAGCACTGTGACHBCACAGTGG AMTGTGACACCACAGT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement AMTRKKRSASCACWGTGACHBCACAGTGG GGAGCACTGTGACACCACA AMTRKKGSAGCACWGTGACABCACAGTGG Direction: Forward Position #: 7 Overlap #: 19 Alignment: AMTRKKRSASCACWGTGACHBCACAGTGG ------GGAGCACTGTGACACCACA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AgTGCTCCACTGTGgTGTCACAgT Combined Motif Reverse Complement Reverse Complement CCACTGTGBTGTCACWGTGCTSCYRMART ACTGTGACACCACAGTGGAGCACT CCACTGTGAYRYCACAGTGSWGCHVHART Direction: Forward Position #: 3 Overlap #: 24 Alignment: CCACTGTGBTGTCACWGTGCTSCYRMART --ACTGTGACACCACAGTGGAGCACT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cCGCGGrCACG Original Motif Reverse Complement CCACTGTGAYRYCACAGTGSWGCHVHART CGTGKCCGCGG CGTGKCCRCKGTGAYRYCACAGTGSWGCHVHART Direction: Forward Position #: 6 Overlap #: 6 Alignment: -----CCACTGTGAYRYCACAGTGSWGCHVHART CGTGKCCGCGG----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwCCAmAGTCmt Reverse Complement Reverse Complement AMTHBHGCWSCACTGTGMKKTCACRGMGGRCACG VDGACTRTGGDD VDGACTVTBGBWSCACTGTGMKKTCACRGMGGRCACG Direction: Forward Position #: 4 Overlap #: 9 Alignment: ---AMTHBHGCWSCACTGTGMKKTCACRGMGGRCACG VDGACTRTGGDD------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Reverse Complement Original Motif CGTGKCCRCKGTGAYRYCACAGTGSWBCBABAGTCHB CAGTGCTCCACTGTGBT CASKKSTCCACTGTGDTRYCACAGTGSWBCBABAGTCHB Direction: Forward Position #: 3 Overlap #: 15 Alignment: --CGTGKCCRCKGTGAYRYCACAGTGSWBCBABAGTCHB CAGTGCTCCACTGTGBT---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCkTGCssk Original Motif Original Motif CASKKSTCCACTGTGDTRYCACAGTGSWBCBABAGTCHB SSGCKTGCSSK SSGCKTGCVSKKSTCCACTGTGDTRYCACAGTGSWBCBABAGTCHB Direction: Forward Position #: 8 Overlap #: 4 Alignment: -------CASKKSTCCACTGTGDTRYCACAGTGSWBCBABAGTCHB SSGCKTGCSSK----------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Reverse Complement VDGACTVTBGBWSCACTGTGMKAHCACAGTGGASYYSBGCAYGCSS AGTGCTCCACTGTGDTG AGTGCTVSACTGTGGTDSCACTGTGMKAHCACAGTGGASYYSBGCAYGCSS Direction: Forward Position #: 6 Overlap #: 12 Alignment: -----VDGACTVTBGBWSCACTGTGMKAHCACAGTGGASYYSBGCAYGCSS AGTGCTCCACTGTGDTG---------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 25 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwCCAmAGTCmt HNF4A Original Motif Original Motif DDCCAMAGTCHB RGGBCAAAGKYCA RGDCCAMAGTCCD Direction: Forward Position #: 2 Overlap #: 12 Alignment: -DDCCAMAGTCHB RGGBCAAAGKYCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement DGGACTYTGGHCK GGYGCTGTCCATGGTGCTGAA DGBRCTKTSSHHGGTGCTGAA Direction: Forward Position #: 1 Overlap #: 13 Alignment: DGGACTYTGGHCK-------- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement DGBRCTKTSSHHGGTGCTGAA MGGTCAGGGTGACCTRDBHV MGGTCAGGGTGACCTRDBBVCTKTSSHHGGTGCTGAA Direction: Forward Position #: 17 Overlap #: 4 Alignment: ----------------DGBRCTKTSSHHGGTGCTGAA MGGTCAGGGTGACCTRDBHV----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Original Motif MGGTCAGGGTGACCTRDBBVCTKTSSHHGGTGCTGAA AAAGGTCAAAGGTCAAC AAAGGTCAAAGGTCARSGTGACCTRDBBVCTKTSSHHGGTGCTGAA Direction: Forward Position #: 10 Overlap #: 8 Alignment: ---------MGGTCAGGGTGACCTRDBBVCTKTSSHHGGTGCTGAA AAAGGTCAAAGGTCAAC----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif AAAGGTCAAAGGTCARSGTGACCTRDBBVCTKTSSHHGGTGCTGAA BTRGGDCARAGGKCA AAAGGTCAAAGGTCARSBDGRCCWRRGGDCWKTSSHHGGTGCTGAA Direction: Forward Position #: 17 Overlap #: 15 Alignment: AAAGGTCAAAGGTCARSGTGACCTRDBBVCTKTSSHHGGTGCTGAA ----------------BTRGGDCARAGGKCA--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Reverse Complement AAAGGTCAAAGGTCARSBDGRCCWRRGGDCWKTSSHHGGTGCTGAA AKGYYCAAAGRTCA AAAGGTCAAAGGTCARSVDGDBCAAAGRTCAKTSSHHGGTGCTGAA Direction: Forward Position #: 18 Overlap #: 14 Alignment: AAAGGTCAAAGGTCARSBDGRCCWRRGGDCWKTSSHHGGTGCTGAA -----------------AKGYYCAAAGRTCA--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Reverse Complement Reverse Complement TTCAGCACCHHSSAYTGAMCTTTGBHCDBSKTGACCTTTGACCTTT BMSMGCCYMCTKSTGGMHM BHCAGCMCCCTGSWGKVVMCTTTGBHCDBSKTGACCTTTGACCTTT Direction: Forward Position #: 1 Overlap #: 19 Alignment: TTCAGCACCHHSSAYTGAMCTTTGBHCDBSKTGACCTTTGACCTTT BMSMGCCYMCTKSTGGMHM--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement AAAGGTCAAAGGTCARSVDGDBCAAAGRBVYCWSCAGGGYGCTGHV BAGGYCABHBTGACCKHV AAAGGTCAAAGGTCARSVDGDBCAAAGADGYCASBVKGRCSBTGHV Direction: Forward Position #: 27 Overlap #: 18 Alignment: AAAGGTCAAAGGTCARSVDGDBCAAAGRBVYCWSCAGGGYGCTGHV --------------------------BAGGYCABHBTGACCKHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb Combined Motif Reverse Complement Original Motif BHCABSGMCRBBSTGMCHTCTTTGBHCDBSKTGACCTTTGACCTTT VBBYCAAGGTCA BHCABSGMCRBBSTGMVBBBYWWGGTCABSKTGACCTTTGACCTTT Direction: Forward Position #: 17 Overlap #: 12 Alignment: BHCABSGMCRBBSTGMCHTCTTTGBHCDBSKTGACCTTTGACCTTT ----------------VBBYCAAGGTCA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Original Motif Original Motif BHCABSGMCRBBSTGMVBBBYWWGGTCABSKTGACCTTTGACCTTT VGCACGTGGH BHCABSGMCRBBSTGMVVCACRWGGHCABSKTGACCTTTGACCTTT Direction: Forward Position #: 17 Overlap #: 10 Alignment: BHCABSGMCRBBSTGMVBBBYWWGGTCABSKTGACCTTTGACCTTT ----------------VGCACGTGGH-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 28 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGCkTGCssk CTCF Original Motif Original Motif SSGCKTGCSSK YDRCCASYAGRKGGCRSYV YDRCCASSVGSKKGCGSKV Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------SSGCKTGCSSK- YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Original Motif Reverse Complement YDRCCASSVGSKKGCGSKV TGACCTTGMBBB TGACCWYSMGVKKGCGSKV Direction: Forward Position #: 1 Overlap #: 12 Alignment: YDRCCASSVGSKKGCGSKV TGACCTTGMBBB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement TGACCWYSMGVKKGCGSKV BAGGYCABHBTGACCKHV TGVMSDYSABVBTGMSCKDV Direction: Forward Position #: 3 Overlap #: 17 Alignment: TGACCWYSMGVKKGCGSKV- --BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement TGVMSDYSABVBTGMSCKDV GGYGCTGTCCATGGTGCTGAA GGYGCTGTCCDTGRTBCTGMVCKDV Direction: Forward Position #: 6 Overlap #: 16 Alignment: -----TGVMSDYSABVBTGMSCKDV GGYGCTGTCCATGGTGCTGAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif VDRGVYCAGBAMCADGGACAGCKCC BTRGGDCARAGGKCA VDRGVBYAGGVCMAAGGDCAGCKCC Direction: Forward Position #: 6 Overlap #: 15 Alignment: VDRGVYCAGBAMCADGGACAGCKCC -----BTRGGDCARAGGKCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Reverse Complement GGYGCTGDCCTTYGBCCTKVVCKDV TGMYCTTTGBCCK GGYGCTGVCCTTTGBCCKKVVCKDV Direction: Forward Position #: 6 Overlap #: 13 Alignment: GGYGCTGDCCTTYGBCCTKVVCKDV -----TGMYCTTTGBCCK------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Original Motif GGYGCTGVCCTTTGBCCKKVVCKDV HSCACGTGGC HSCACGBBGCTGVCCTTTGBCCKKVVCKDV Direction: Forward Position #: 6 Overlap #: 5 Alignment: -----GGYGCTGVCCTTTGBCCKKVVCKDV HSCACGTGGC-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Original Motif HSCACGBBGCTGVCCTTTGBCCKKVVCKDV VGCACGTGGH VSCACGTGGCTGVCCTTTGBCCKKVVCKDV Direction: Forward Position #: 1 Overlap #: 10 Alignment: HSCACGBBGCTGVCCTTTGBCCKKVVCKDV VGCACGTGGH-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Reverse Complement Original Motif VDRGVBYRGGBCAAAGGBCAGCCACGTGSV AAAGGTCAAAGGTCAAC VDRGVHHAGGTCAAAGGTCARCCACGTGSV Direction: Forward Position #: 6 Overlap #: 17 Alignment: VDRGVBYRGGBCAAAGGBCAGCCACGTGSV -----AAAGGTCAAAGGTCAAC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Reverse Complement Reverse Complement VSCACGTGGKTGACCTTTGACCTHHVCKDV CKGGDTBDMMCTGG VSCACSTGGKTGDMCYTKGACCTHHVCKDV Direction: Forward Position #: 6 Overlap #: 14 Alignment: VSCACGTGGKTGACCTTTGACCTHHVCKDV -----CKGGDTBDMMCTGG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 24 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk ESR1 Reverse Complement Reverse Complement BBSGGCGGGGBS MGGTCAGGGTGACCTRDBHV MGGTCAGBBKGRCSKGGBBV Direction: Backward Position #: 2 Overlap #: 12 Alignment: -------BBSGGCGGGGBS- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Original Motif MGGTCAGBBKGRCSKGGBBV YDRCCASYAGRKGGCRSYV HGGYCASBAGGGSGBGSBVV Direction: Forward Position #: 1 Overlap #: 19 Alignment: MGGTCAGBBKGRCSKGGBBV YDRCCASYAGRKGGCRSYV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Reverse Complement VVBSCBCSCCCTBSTGKCCD TGRCCTKTGHCCKAB VVBSYGVCCYYTGBYSKMBD Direction: Forward Position #: 5 Overlap #: 15 Alignment: VVBSCBCSCCCTBSTGKCCD ----TGRCCTKTGHCCKAB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement VVBSYGVCCYYTGBYSKMBD BAGGYCABHBTGACCKHV VVHGBBCMCBBTGVCCKHVD Direction: Forward Position #: 2 Overlap #: 18 Alignment: VVBSYGVCCYYTGBYSKMBD -BAGGYCABHBTGACCKHV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement HVHYGGBCABBGYGVBCHVV GGYGCTGTCCATGGTGCTGAA GGHVCTGKCCABGGTGCTSHVV Direction: Forward Position #: 3 Overlap #: 19 Alignment: --HVHYGGBCABBGYGVBCHVV GGYGCTGTCCATGGTGCTGAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Original Motif Original Motif GGHVCTGKCCABGGTGCTSHVV VBBYCAAGGTCA VGBHSMWGGYCABGGTGCTSHVV Direction: Forward Position #: 2 Overlap #: 11 Alignment: -GGHVCTGKCCABGGTGCTSHVV VBBYCAAGGTCA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Original Motif VGBHSMWGGYCABGGTGCTSHVV RGGBCAAAGKYCA VGBHSMDGGBCADRGKBCHSHVV Direction: Forward Position #: 7 Overlap #: 13 Alignment: VGBHSMWGGYCABGGTGCTSHVV ------RGGBCAAAGKYCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Original Motif VGBHSMDGGBCADRGKBCHSHVV CCAGYYHVADCCRG VGBHCMAGBYCAARSYDSHSHVV Direction: Forward Position #: 5 Overlap #: 14 Alignment: VGBHSMDGGBCADRGKBCHSHVV ----CCAGYYHVADCCRG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Original Motif VGBHCMAGBYCAARSYDSHSHVV HSCACGTGGC VBCACSHGGYCAARSYDSHSHVV Direction: Forward Position #: 1 Overlap #: 10 Alignment: VGBHCMAGBYCAARSYDSHSHVV HSCACGTGGC------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Original Motif VBCACSHGGYCAARSYDSHSHVV VGCACGTGGH VGCACGTGGHCAARSYDSHSHVV Direction: Forward Position #: 1 Overlap #: 10 Alignment: VBCACSHGGYCAARSYDSHSHVV VGCACGTGGH------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 29 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cCGCGGrCACG REST Original Motif Original Motif CCGCGGRCACG TTCAGCACCATGGACAGCKCC TTCAGCACCRCGGACASSKCC Direction: Backward Position #: 4 Overlap #: 11 Alignment: -------CCGCGGRCACG--- TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif GGYSSTGTCCGMGGTGCTGAA VDBHMAGGTCACCCTGACCY GVHVCWGKYCRCSSTGMYSHA Direction: Forward Position #: 1 Overlap #: 20 Alignment: GGYSSTGTCCGMGGTGCTGAA VDBHMAGGTCACCCTGACCY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Original Motif Original Motif GVHVCWGKYCRCSSTGMYSHA YDRCCASYAGRKGGCRSYV YDRCCASYAGRKGGCRSHVCWGKYCRCSSTGMYSHA Direction: Forward Position #: 16 Overlap #: 4 Alignment: ---------------GVHVCWGKYCRCSSTGMYSHA YDRCCASYAGRKGGCRSYV----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif YDRCCASYAGRKGGCRSHVCWGKYCRCSSTGMYSHA BTRGGDCARAGGKCA YDRCCASYAGRBGGSGBCAVAGGBCACSSTGMYSHA Direction: Forward Position #: 12 Overlap #: 15 Alignment: YDRCCASYAGRKGGCRSHVCWGKYCRCSSTGMYSHA -----------BTRGGDCARAGGKCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement THSMRCASSGTGVCCTBTGBCSCCBMCTKSTGGMHM BAGGYCABHBTGACCKHV THSMRCASSGTGVCCTBTGBCVVBHCMTBSTGRCCDHV Direction: Forward Position #: 21 Overlap #: 16 Alignment: THSMRCASSGTGVCCTBTGBCSCCBMCTKSTGGMHM-- --------------------BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Reverse Complement Original Motif VHDGGMCASBARGHBVBGBCAVAGGBCACSSTGMYSHA VGCACGTGGH VHDGGMCASBARGHBVHGCAMGWGGBCACSSTGMYSHA Direction: Forward Position #: 17 Overlap #: 10 Alignment: VHDGGMCASBARGHBVBGBCAVAGGBCACSSTGMYSHA ----------------VGCACGTGGH------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Original Motif VHDGGMCASBARGHBVHGCAMGWGGBCACSSTGMYSHA HSCACGTGGC HSCACGHGGMCASBARGHBVHGCAMGWGGBCACSSTGMYSHA Direction: Forward Position #: 5 Overlap #: 6 Alignment: ----VHDGGMCASBARGHBVHGCAMGWGGBCACSSTGMYSHA HSCACGTGGC-------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Original Motif Reverse Complement HSCACGHGGMCASBARGHBVHGCAMGWGGBCACSSTGMYSHA GCGGACGTTV GCGSACGTKVMCASBARGHBVHGCAMGWGGBCACSSTGMYSHA Direction: Forward Position #: 2 Overlap #: 9 Alignment: -HSCACGHGGMCASBARGHBVHGCAMGWGGBCACSSTGMYSHA GCGGACGTTV--------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb Combined Motif Reverse Complement Original Motif THSMRCASSGTGBCCWCRTGCDVBHCMTBSTGRVYACGTSCGC VBBYCAAGGTCA THSMRCASSGTGBCCDVVYSMAGGTCATBSTGRVYACGTSCGC Direction: Forward Position #: 16 Overlap #: 12 Alignment: THSMRCASSGTGBCCWCRTGCDVBHCMTBSTGRVYACGTSCGC ---------------VBBYCAAGGTCA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Reverse Complement GCGSACGTKVMCASBATGACCTYSMVVDGGBCACSSTGMYSHA TGMYCTTTGBCCK GCGSACGTKVMCASBATGACCTYSMVVDGGBSACCKTKVYBCD Direction: Forward Position #: 31 Overlap #: 13 Alignment: GCGSACGTKVMCASBATGACCTYSMVVDGGBCACSSTGMYSHA ------------------------------TGMYCTTTGBCCK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 4 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb TgTGgTGTCACAGTGCTCC Reverse Complement Original Motif TGACCTTGMBBB TGTGGTGTCACAGTGCTCC TGTGGTGTSACMKTGCTCC Direction: Backward Position #: 1 Overlap #: 12 Alignment: -------TGACCTTGMBBB TGTGGTGTCACAGTGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif TGTGGTGTSACMKTGCTCC TGGAGCACTGTGACAVCACAGTGG TGGAGCACTGTGACAVCACWGTGGTGTSACMKTGCTCC Direction: Forward Position #: 20 Overlap #: 5 Alignment: -------------------TGTGGTGTSACMKTGCTCC TGGAGCACTGTGACAVCACAGTGG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Reverse Complement GGAGCARRGTSACACCACWGTGVTGTCACAGTGCTCCA AGTGSWSCACTGTGAMAMCACAGTG GGAGCARRRKBRCASCACTGTGVYRHCACAGTGCTCCA Direction: Forward Position #: 9 Overlap #: 25 Alignment: GGAGCARRGTSACACCACWGTGVTGTCACAGTGCTCCA --------AGTGSWSCACTGTGAMAMCACAGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwCCAmAGTCmt Reverse Complement Reverse Complement TGGAGCACTGTGHMMBCACAGTGSTGKVRMMKTGCTCC VDGACTRTGGDD VDGACTRTGGAGCACTGTGHMMBCACAGTGSTGKVRMMKTGCTCC Direction: Forward Position #: 8 Overlap #: 5 Alignment: -------TGGAGCACTGTGHMMBCACAGTGSTGKVRMMKTGCTCC VDGACTRTGGDD--------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGCkTGCssk Combined Motif Original Motif Original Motif VDGACTRTGGAGCACTGTGHMMBCACAGTGSTGKVRMMKTGCTCC SSGCKTGCSSK VDGACTRTGGAGCACTGTGHMMBCACAGTGSTGKSVSCKTGCBSB Direction: Forward Position #: 35 Overlap #: 11 Alignment: VDGACTRTGGAGCACTGTGHMMBCACAGTGSTGKVRMMKTGCTCC ----------------------------------SSGCKTGCSSK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk Combined Motif Original Motif Original Motif VDGACTRTGGAGCACTGTGHMMBCACAGTGSTGKSVSCKTGCBSB SBCCCCGCCSBB VDGACTRTGGAGCACTGTGHMVBCMCMGYSSHGKSVSCKTGCBSB Direction: Forward Position #: 22 Overlap #: 12 Alignment: VDGACTRTGGAGCACTGTGHMMBCACAGTGSTGKSVSCKTGCBSB ---------------------SBCCCCGCCSBB------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement VDGACTRTGGAGCACTGTGHMVBCMCMGYSSHGKSVSCKTGCBSB ACTGTGACACCACAGTGGAGCACT ACTGTGACABSACWGTGGAGCACTGTGHMVBCMCMGYSSHGKSVSCKTGCBSB Direction: Forward Position #: 9 Overlap #: 16 Alignment: --------VDGACTRTGGAGCACTGTGHMVBCMCMGYSSHGKSVSCKTGCBSB ACTGTGACACCACAGTGGAGCACT----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif atactttggc Original Motif Original Motif ACTGTGACABSACWGTGGAGCACTGTGHMVBCMCMGYSSHGKSVSCKTGCBSB ATACTTTGGC ATACTKTGRCABSACWGTGGAGCACTGTGHMVBCMCMGYSSHGKSVSCKTGCBSB Direction: Forward Position #: 3 Overlap #: 8 Alignment: --ACTGTGACABSACWGTGGAGCACTGTGHMVBCMCMGYSSHGKSVSCKTGCBSB ATACTTTGGC--------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cCGCGGrCACG Combined Motif Original Motif Reverse Complement ATACTKTGRCABSACWGTGGAGCACTGTGHMVBCMCMGYSSHGKSVSCKTGCBSB CGTGKCCGCGG ATACTKTGRCABSACWGTGGAGCACTGTGHCSTSDCCGCGSHGKSVSCKTGCBSB Direction: Forward Position #: 31 Overlap #: 11 Alignment: ATACTKTGRCABSACWGTGGAGCACTGTGHMVBCMCMGYSSHGKSVSCKTGCBSB ------------------------------CGTGKCCGCGG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Reverse Complement ATACTKTGRCABSACWGTGGAGCACTGTGHCSTSDCCGCGSHGKSVSCKTGCBSB ACTGTGGTGTCACART ACTRTRSTGTSACAVBACWGTGGAGCACTGTGHCSTSDCCGCGSHGKSVSCKTGCBSB Direction: Forward Position #: 4 Overlap #: 13 Alignment: ---ATACTKTGRCABSACWGTGGAGCACTGTGHCSTSDCCGCGSHGKSVSCKTGCBSB ACTGTGGTGTCACART------------------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 13 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF gCGCGCsCgsG Original Motif Original Motif BAACGTCCGC GCGCGCSCGCG BHRCGYCCGCG Direction: Forward Position #: 1 Overlap #: 10 Alignment: BAACGTCCGC- GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-20-2016 21:11:03 Runtime: 725.149 seconds MOTIFSIM is written by Ngoc Tam L. 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