**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.1 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 4 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Phylogenetic tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # DREME_DM721.txt 16 1 MEME-ChIP_DM721.txt 11 2 PScanChIP_DM721.txt 37 3 RSAT_peak-motifs_DM721.txt 40 4 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** *************************************************************** Combined Motifs for Top Best Match Motif ID 1 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 AAAAAAAAAAA Original Motif Original Motif AAAAWAAA AAAAAAAAAAA AAAAAAAAAAA Direction: Backward Position #: 2 Overlap #: 8 Alignment: --AAAAWAAA- AAAAAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Original Motif AAAAAAAAAAA AAAASAAA AAAAMAAAAAA Direction: Forward Position #: 1 Overlap #: 8 Alignment: AAAAAAAAAAA AAAASAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Reverse Complement Reverse Complement TTTTTTYTTTT HWTTTTTTWW TWTTTTTTTTT Direction: Forward Position #: 1 Overlap #: 10 Alignment: TTTTTTYTTTT HWTTTTTTWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Original Motif Original Motif TWTTTTTTTTT TKKTTTGTTTTTTT TKKTTTGTTTTTTTTTTTTT Direction: Forward Position #: 10 Overlap #: 5 Alignment: ---------TWTTTTTTTTT TKKTTTGTTTTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwTAAwAAww Combined Motif Original Motif Reverse Complement TKKTTTGTTTTTTTTTTTTT HHTTWTTADD TKKTTTBTTTTTWTTTTTTT Direction: Forward Position #: 6 Overlap #: 10 Alignment: TKKTTTGTTTTTTTTTTTTT -----HHTTWTTADD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- aaCAAAAACaa Combined Motif Original Motif Reverse Complement TKKTTTBTTTTTWTTTTTTT HTGTTTTTGHH TKKTTTGTTTTTGTTTTTTT Direction: Forward Position #: 5 Overlap #: 11 Alignment: TKKTTTBTTTTTWTTTTTTT ----HTGTTTTTGHH----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwTAAAwAww Combined Motif Reverse Complement Original Motif AAAAAAACAAAAACAAARRA DDTAAAWAHH AAAAADDTAAAAAHAAARRA Direction: Forward Position #: 6 Overlap #: 10 Alignment: AAAAAAACAAAAACAAARRA -----DDTAAAWAHH----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wtATTTTTAww Combined Motif Reverse Complement Original Motif TKKTTTDTTTTTADDTTTTT DHATTTTTADD TKKTTHATTTTTADDTTTTT Direction: Forward Position #: 5 Overlap #: 11 Alignment: TKKTTTDTTTTTADDTTTTT ----DHATTTTTADD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- aaACAAAACaa Combined Motif Original Motif Reverse Complement TKKTTHATTTTTADDTTTTT TTGTTTTGTTT TKKTTTGTTTTKWHHTTTTT Direction: Forward Position #: 5 Overlap #: 11 Alignment: TKKTTHATTTTTADDTTTTT ----TTGTTTTGTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tyTCTkTkTCyy Combined Motif Original Motif Original Motif TKKTTTGTTTTKWHHTTTTT BBTCTKTKTCHB TKKTBHKYTTTKTCHTTTTT Direction: Forward Position #: 5 Overlap #: 12 Alignment: TKKTTTGTTTTKWHHTTTTT ----BBTCTKTKTCHB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yayAyAyACATrya Combined Motif Original Motif Reverse Complement TKKTBHKYTTTKTCHTTTTT DHKATGTKTKTGTD TKDTATKTTTTTKBDTTTTT Direction: Forward Position #: 2 Overlap #: 14 Alignment: TKKTBHKYTTTKTCHTTTTT -DHKATGTKTKTGTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 2 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 CACACACACACA Original Motif Original Motif CACACACA CACACACACACA CACACACACACA Direction: Backward Position #: 3 Overlap #: 8 Alignment: --CACACACA-- CACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Reverse Complement Reverse Complement TGTGTGTGTGTG TGTGTGTGTGTG TGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGTG TGTGTGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Reverse Complement TGTGTGTGTGTG TGTGTGTGTGTKTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGTG-- TGTGTGTGTGTKTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Reverse Complement Original Motif CACACACACACACA CACACAVRCACACA CACACACACACACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACACACACACA CACACAVRCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Reverse Complement Original Motif TGTGTGTGTGTGTG DHAYAYAYRTGTGTRTDH DTRTRYRTRTGTGTGTDH Direction: Forward Position #: 2 Overlap #: 14 Alignment: -TGTGTGTGTGTGTG--- DHAYAYAYRTGTGTRTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Reverse Complement Original Motif HDACACACAMAKMMAMAD HACAYAYACATRHD HVBACACACAYRBAMAMAD Direction: Forward Position #: 2 Overlap #: 13 Alignment: -HDACACACAMAKMMAMAD HACAYAYACATRHD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Original Motif Original Motif HVBACACACAYRBAMAMAD HHCAAAAACAH HHCAMAMACAHRBAMAMAD Direction: Forward Position #: 1 Overlap #: 11 Alignment: HVBACACACAYRBAMAMAD HHCAAAAACAH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Original Motif Original Motif HHCAMAMACAHRBAMAMAD HHTACATAVD HHYACATACAHRBAMAMAD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHCAMAMACAHRBAMAMAD HHTACATAVD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Original Motif HHYACATACAHRBAMAMAD CCCCMAAMCAMCCMCMMMCV MCYMMAWACAMMHMCMMMBV Direction: Forward Position #: 1 Overlap #: 19 Alignment: HHYACATACAHRBAMAMAD- CCCCMAAMCAMCCMCMMMCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Reverse Complement BBYRYGYDRRTGTWTRRKGR DVTGCATGCATGBH BVTGCRTGSATGTHTRRKGR Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBYRYGYDRRTGTWTRRKGR DVTGCATGCATGBH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 3 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 wwTAAAwAww Reverse Complement Reverse Complement TYTATWT HHTWTTTADD THTATTTADD Direction: Forward Position #: 1 Overlap #: 7 Alignment: TYTATWT--- HHTWTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Original Motif Reverse Complement THTATTTADD TTTWTTTT TTTWTTTWDD Direction: Forward Position #: 1 Overlap #: 8 Alignment: THTATTTADD TTTWTTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Original Motif Reverse Complement TTTWTTTWDD DBTATGTAHH THTATKTAHH Direction: Forward Position #: 1 Overlap #: 10 Alignment: TTTWTTTWDD DBTATGTAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Reverse Complement THTATKTAHH TTTSTTTT TTTVTTTWHH Direction: Forward Position #: 1 Overlap #: 8 Alignment: THTATKTAHH TTTSTTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Original Motif HHWAAABAAA AAAAAAAAAAA DAAAAAAAAAA Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHWAAABAAA- AAAAAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Reverse Complement DAAAAAAAAAA VHGARAYAGAVV HHRAAAHARAAV Direction: Forward Position #: 1 Overlap #: 11 Alignment: DAAAAAAAAAA- VHGARAYAGAVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif HHRAAAHARAAV WWAAAAAAWH DWAAAAAADAAV Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHRAAAHARAAV WWAAAAAAWH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Reverse Complement Reverse Complement BTTDTTTTTTWD TTGTTTTGTTT BTKTTTTKTTTD Direction: Forward Position #: 1 Overlap #: 11 Alignment: BTTDTTTTTTWD TTGTTTTGTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Reverse Complement Reverse Complement DAAAYAAAAYAV AAAAAAACAAARRA AAAAAAACAAAARAYAAAAYAV Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------DAAAYAAAAYAV AAAAAAACAAARRA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACACACACACA Combined Motif Reverse Complement Reverse Complement BTKTTTTKTKTTTTGTTTTTTT TGTGTGTGTGTG BTKTTTTGTKTKTKKKTKTTTT Direction: Forward Position #: 7 Overlap #: 12 Alignment: BTKTTTTKTKTTTTGTTTTTTT ------TGTGTGTGTGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 4 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 EWSR1-FLI1 Reverse Complement Original Motif GGAGGVMG GGAAGGAAGGAAGGAAGG GGAAGGRAGGAAGGAAGG Direction: Backward Position #: 6 Overlap #: 8 Alignment: -----GGAGGVMG----- GGAAGGAAGGAAGGAAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Reverse Complement Original Motif CCTTCCTTCCTMCCTTCC CCCCKCCCCC CCTTCCYYCCYCCCTTCC Direction: Forward Position #: 5 Overlap #: 10 Alignment: CCTTCCTTCCTMCCTTCC ----CCCCKCCCCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rrAGGGGGArr Original Motif Reverse Complement CCTTCCYYCCYCCCTTCC VVTCCCCCTVV CCTYCCCCTCYCCCTTCC Direction: Forward Position #: 1 Overlap #: 11 Alignment: CCTTCCYYCCYCCCTTCC VVTCCCCCTVV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Reverse Complement Reverse Complement GGAAGGGKGAGGGGKAGG SSGGGCGGSGGCGSS GGARGGVGGVGGSGKAGG Direction: Forward Position #: 2 Overlap #: 15 Alignment: GGAAGGGKGAGGGGKAGG -SSGGGCGGSGGCGSS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Original Motif Original Motif GGARGGVGGVGGSGKAGG DGGGYGKGGC GGADGGGBGBGGSGKAGG Direction: Forward Position #: 4 Overlap #: 10 Alignment: GGARGGVGGVGGSGKAGG ---DGGGYGKGGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Reverse Complement Original Motif CCTYCSCCBCBCCCDTCC CCGCCGCC CCGCCGCCBCBCCCDTCC Direction: Forward Position #: 1 Overlap #: 8 Alignment: CCTYCSCCBCBCCCDTCC CCGCCGCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Original Motif Original Motif CCGCCGCCBCBCCCDTCC BBCRCCYCCGBB CCGCCSSCCCYCSCBTCC Direction: Forward Position #: 4 Overlap #: 12 Alignment: CCGCCGCCBCBCCCDTCC ---BBCRCCYCCGBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGsCTCss Combined Motif Original Motif Original Motif CCGCCSSCCCYCSCBTCC VVCGSCTCBB CCGCBSCSCCTCSSBTCC Direction: Forward Position #: 5 Overlap #: 10 Alignment: CCGCCSSCCCYCSCBTCC ----VVCGSCTCBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MZF1_5-13 Combined Motif Original Motif Reverse Complement CCGCBSCSCCTCSSBTCC BTHCCCCTYB CCGCBBCCCCYYBBBTCC Direction: Forward Position #: 5 Overlap #: 10 Alignment: CCGCBSCSCCTCSSBTCC ----BTHCCCCTYB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Original Motif CCGCBBCCCCYYBBBTCC CCCCMAAMCAMCCMCMMMCV CCCCMAAMCAMCCMCCCVCVBCCCCYYBBBTCC Direction: Forward Position #: 16 Overlap #: 5 Alignment: ---------------CCGCBBCCCCYYBBBTCC CCCCMAAMCAMCCMCMMMCV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 5 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 AAAAAAAAAAA Original Motif Original Motif AAAASAAA AAAAAAAAAAA AAAAAMAAAAA Direction: Forward Position #: 2 Overlap #: 8 Alignment: -AAAASAAA-- AAAAAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Reverse Complement Reverse Complement TTTTTYTTTTT TTTWTTTT TTTTTTTTTTT Direction: Forward Position #: 1 Overlap #: 8 Alignment: TTTTTYTTTTT TTTWTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Original Motif Original Motif TTTTTTTTTTT TKKTTTGTTTTTTT TKKTTTGTTTTTTTTTTTTT Direction: Forward Position #: 10 Overlap #: 5 Alignment: ---------TTTTTTTTTTT TKKTTTGTTTTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwWAAAAAwa Combined Motif Original Motif Reverse Complement TKKTTTGTTTTTTTTTTTTT HWTTTTTTWW TKKTTTDTTTTTTTTTTTTT Direction: Forward Position #: 6 Overlap #: 10 Alignment: TKKTTTGTTTTTTTTTTTTT -----HWTTTTTTWW----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- aaACAAAACaa Combined Motif Original Motif Reverse Complement TKKTTTDTTTTTTTTTTTTT TTGTTTTGTTT TKKTTTGTTTTKTTTTTTTT Direction: Forward Position #: 5 Overlap #: 11 Alignment: TKKTTTDTTTTTTTTTTTTT ----TTGTTTTGTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tyTCTkTkTCyy Combined Motif Original Motif Original Motif TKKTTTGTTTTKTTTTTTTT BBTCTKTKTCHB TKKTTTBTYTTTTTYTTTTT Direction: Forward Position #: 6 Overlap #: 12 Alignment: TKKTTTGTTTTKTTTTTTTT -----BBTCTKTKTCHB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- aaCAAAAACaa Combined Motif Original Motif Reverse Complement TKKTTTBTYTTTTTYTTTTT HTGTTTTTGHH TKKTTTGTTTTTKTYTTTTT Direction: Forward Position #: 5 Overlap #: 11 Alignment: TKKTTTBTYTTTTTYTTTTT ----HTGTTTTTGHH----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 2 Reverse Complement Original Motif AAAAAMAYAAAAACAAARRA CACACACA CAMAMACAYAAAAACAAARRA Direction: Forward Position #: 2 Overlap #: 7 Alignment: -AAAAAMAYAAAAACAAARRA CACACACA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wtATTTTTAww Combined Motif Reverse Complement Original Motif TKKTTTGTTTTTKTGTYTRTG DHATTTTTADD TKKTTHRTTTTTRTDTYTRTG Direction: Forward Position #: 5 Overlap #: 11 Alignment: TKKTTTGTTTTTKTGTYTRTG ----DHATTTTTADD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Original Motif Reverse Complement TKKTTHRTTTTTRTDTYTRTG TGTGTGTGTGTKTG TKKTKTGTKTKTRTKTGTRTG Direction: Forward Position #: 4 Overlap #: 14 Alignment: TKKTTHRTTTTTRTDTYTRTG ---TGTGTGTGTGTKTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 6 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Klf4 Original Motif Reverse Complement CCCCRCCC GCCYCMCCCD GCCCCACCCD Direction: Backward Position #: 2 Overlap #: 8 Alignment: -CCCCRCCC- GCCYCMCCCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Reverse Complement Reverse Complement DGGGTGGGGC DDGGTGRGGBD DGGGTGGGGBD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DGGGTGGGGC- DDGGTGRGGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Original Motif Reverse Complement DGGGTGGGGBD GGGGMGGG GGGGHGGGGBD Direction: Forward Position #: 1 Overlap #: 8 Alignment: DGGGTGGGGBD GGGGMGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Original Motif Reverse Complement GGGGHGGGGBD GGGGGYGGGG GGGGBGGGGGD Direction: Forward Position #: 1 Overlap #: 10 Alignment: GGGGHGGGGBD GGGGGYGGGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Original Motif Reverse Complement GGGGBGGGGGD SSGGGCGGSGGCGSS SSGGGCGGSGGSGGBGGGGGD Direction: Forward Position #: 11 Overlap #: 5 Alignment: ----------GGGGBGGGGGD SSGGGCGGSGGCGSS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Combined Motif Original Motif Reverse Complement SSGGGCGGSGGSGGBGGGGGD GGCGGCGG SSGGGCGGCGGCGGBGGGGGD Direction: Forward Position #: 7 Overlap #: 8 Alignment: SSGGGCGGSGGSGGBGGGGGD ------GGCGGCGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Reverse Complement Reverse Complement HCCCCCBCCGCCGCCGCCCSS BBCGCCCSGCVV HCCCCBCSCSCCGCCVCCCSS Direction: Forward Position #: 5 Overlap #: 12 Alignment: HCCCCCBCCGCCGCCGCCCSS ----BBCGCCCSGCVV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- INSM1 Combined Motif Reverse Complement Original Motif SSGGGVGGCGGSGSGBGGGGD TGYCAGGGGGCR SSGGGBGKCDGGGGGBGGGGD Direction: Forward Position #: 6 Overlap #: 12 Alignment: SSGGGVGGCGGSGSGBGGGGD -----TGYCAGGGGGCR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Original Motif Reverse Complement SSGGGBGKCDGGGGGBGGGGD GKGTGKGC GKGKGKGCCDGGGGGBGGGGD Direction: Forward Position #: 1 Overlap #: 8 Alignment: SSGGGBGKCDGGGGGBGGGGD GKGTGKGC------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Reverse Complement Original Motif HCCCCBCCCCCDGGCRCRCYC BBCRCCYCCGBB HCCCCBCSCCCBSGCVCRCYC Direction: Forward Position #: 5 Overlap #: 12 Alignment: HCCCCBCCCCCDGGCRCRCYC ----BBCRCCYCCGBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 7 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 tyTCTkTkTCyy Reverse Complement Original Motif TTCTSTST BBTCTKTKTCHB BTTCTSTBTCHB Direction: Backward Position #: 4 Overlap #: 8 Alignment: -TTCTSTST--- BBTCTKTKTCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Original Motif Reverse Complement BTTCTSTBTCHB TTGTTTTGTTT BTKYTTTGTYTB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BTTCTSTBTCHB TTGTTTTGTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rmACAGCAGsr Original Motif Reverse Complement BTKYTTTGTYTB DVCTGCTGTVB BBSTKYTGTBHB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BTKYTTTGTYTB DVCTGCTGTVB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement BBSTKYTGTBHB TGTGTGTGTGTG TBTKTSTGTGTB Direction: Forward Position #: 1 Overlap #: 12 Alignment: BBSTKYTGTBHB TGTGTGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement TBTKTSTGTGTB TGTGTGTGTGTG TGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TBTKTSTGTGTB TGTGTGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Reverse Complement TGTGTGTGTGTG TTTTTTTTTTT TKTKTKTKTKTG Direction: Forward Position #: 1 Overlap #: 11 Alignment: TGTGTGTGTGTG TTTTTTTTTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Original Motif Original Motif TKTKTKTKTKTG TKKTTTGTTTTTTT TKKTTTGTTTTTTTTKTKTKTG Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------TKTKTKTKTKTG TKKTTTGTTTTTTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Original Motif Reverse Complement TKKTTTGTTTTTTTTKTKTKTG TGTGTGTGTGTKTG TTKTKTGTKTKTKTKKTKTKTG Direction: Forward Position #: 2 Overlap #: 14 Alignment: TKKTTTGTTTTTTTTKTKTKTG -TGTGTGTGTGTKTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 25 Combined Motif Reverse Complement Original Motif CAYARARYARAYAYACAYAYAA CACACAVRCACACA CAYARARCAVACABACACACAA Direction: Forward Position #: 8 Overlap #: 14 Alignment: CAYARARYARAYAYACAYAYAA -------CACACAVRCACACA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 8 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 wtTTWwAAAaw Original Motif Reverse Complement TTTWWAAW DDTTTWAAAHH DDTTTWWAAWH Direction: Backward Position #: 2 Overlap #: 8 Alignment: --TTTWWAAW- DDTTTWAAAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Original Motif DDTTTWWAAWH DHATTTTTADD DHWTTTTWAWH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DDTTTWWAAWH DHATTTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAwAAww Reverse Complement Original Motif HWTWAAAAWHD DDTAAWAAHH DDTAAWAAWHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HWTWAAAAWHD DDTAAWAAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif DDTAAWAAWHD WWAAAAAAWH DWWAAAAAWHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAWAAWHD WWAAAAAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Original Motif Original Motif DWWAAAAAWHD DDTAAAWAHH DDTAAAAAHHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DWWAAAAAWHD DDTAAAWAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wyATTTTAww Original Motif Reverse Complement DDTAAAAAHHD DDTAAAATHD DDTAAAAWHHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAAHHD DDTAAAATHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Original Motif Original Motif DDTAAAAWHHD HHCAAAAACAH HDYAAAAACHH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DDTAAAAWHHD HHCAAAAACAH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Reverse Complement HHGTTTTTKDH TTTTTTTTTTT TTKTTTTTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHGTTTTTKDH TTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Original Motif Reverse Complement TTKTTTTTTTT TTTWTTTT TTTTTTTTTTT Direction: Forward Position #: 1 Overlap #: 8 Alignment: TTKTTTTTTTT TTTWTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAATTAATTAww Original Motif Reverse Complement TTTTTTTTTTT DHTAATTAATTADH WTTWWTTWWTTADH Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTTTTTTTTTT--- DHTAATTAATTADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 9 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 ssCwGGCCwGCss Original Motif Reverse Complement GCTGGGAW BBGCTGGCCWGBB BBGCTGGSMWGBB Direction: Backward Position #: 4 Overlap #: 8 Alignment: --GCTGGGAW--- BBGCTGGCCWGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 12 Original Motif Reverse Complement BBGCTGGSMWGBB GCTGRCCT GCTGVSCTGGSMWGBB Direction: Forward Position #: 4 Overlap #: 5 Alignment: ---BBGCTGGSMWGBB GCTGRCCT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Reverse Complement Original Motif BBCWYSCCAGSVCAGC HBCCMCACCHH BBCYCCMCMGSVCAGC Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBCWYSCCAGSVCAGC HBCCMCACCHH----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sgCTGGCCAGcs Original Motif Original Motif BBCYCCMCMGSVCAGC BBCTGGCCAGVV BBCTSSCCAGVVCAGC Direction: Forward Position #: 1 Overlap #: 12 Alignment: BBCYCCMCMGSVCAGC BBCTGGCCAGVV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCTswGCCms Original Motif Original Motif BBCTSSCCAGVVCAGC VBGCTSAGCCHB VBGCTSVSCMVBVCAGC Direction: Forward Position #: 2 Overlap #: 11 Alignment: -BBCTSSCCAGVVCAGC VBGCTSAGCCHB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Reverse Complement Reverse Complement GCTGVBVRGSVSAGCBV MGCCCCCTGMCA MGCCCSCTGVCVRGSVSAGCBV Direction: Forward Position #: 6 Overlap #: 7 Alignment: -----GCTGVBVRGSVSAGCBV MGCCCCCTGMCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rrAGGGGGArr Original Motif Reverse Complement MGCCCSCTGVCVRGSVSAGCBV VVTCCCCCTVV MVYCCCCYKVBVRGSVSAGCBV Direction: Forward Position #: 1 Overlap #: 11 Alignment: MGCCCSCTGVCVRGSVSAGCBV VVTCCCCCTVV----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif EWSR1-FLI1 Original Motif Reverse Complement MVYCCCCYKVBVRGSVSAGCBV CCTTCCTTCCTTCCTTCC CCTTCCTTCCTTCCTYCCCYKVBVRGSVSAGCBV Direction: Forward Position #: 13 Overlap #: 6 Alignment: ------------MVYCCCCYKVBVRGSVSAGCBV CCTTCCTTCCTTCCTTCC---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCksCGss Reverse Complement Original Motif VBGCTSVSCMBBVRKGGGKAGGAAGGAAGGAAGG VVCGCKSCGBB VVCGCTSCGCVBBVRKGGGKAGGAAGGAAGGAAGG Direction: Forward Position #: 2 Overlap #: 10 Alignment: -VBGCTSVSCMBBVRKGGGKAGGAAGGAAGGAAGG VVCGCKSCGBB------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Reverse Complement Original Motif CCTTCCTTCCTTCCTYCCCYKVBVVGCGSAGCGVV VVGCSGGGCGBB CCTTCCTTCCTTCCTYCCCYKVBVVGCGGRGCGVV Direction: Forward Position #: 24 Overlap #: 12 Alignment: CCTTCCTTCCTTCCTYCCCYKVBVVGCGSAGCGVV -----------------------VVGCSGGGCGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 10 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 twTACATAvw Original Motif Original Motif TAMATA HHTACATAVD HHTACATAVD Direction: Forward Position #: 3 Overlap #: 6 Alignment: --TAMATA-- HHTACATAVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Original Motif Original Motif HHTACATAVD DDTAAAWAHH HHTAMATAHH Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHTACATAVD DDTAAAWAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Reverse Complement HHTAMATAHH DDTAAAAATHD DDTAAAWATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHTAMATAHH- DDTAAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wrTGTATACAyw Original Motif Original Motif DDTAAAWATHD HDTGTATACAHD HDTRWATAYAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: DDTAAAWATHD- HDTGTATACAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAATTAATTAww Original Motif Original Motif HDTRWATAYAHD HDTAATTAATTAHD HDTAAWTAHWTAHD Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDTRWATAYAHD-- HDTAATTAATTAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 2 Original Motif Reverse Complement HDTAAWTAHWTAHD TGTGTGTG TGTGTGTRAWTAHWTAHD Direction: Forward Position #: 5 Overlap #: 4 Alignment: ----HDTAAWTAHWTAHD TGTGTGTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Reverse Complement Original Motif DHTAWHTAWTKACACACA DHAYAYAYRTGTGTRTDH DHAYAYAYRTGTGTDTDHWHTAWTKACACACA Direction: Forward Position #: 15 Overlap #: 4 Alignment: --------------DHTAWHTAWTKACACACA DHAYAYAYRTGTGTRTDH-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yayAyAyACATrya Combined Motif Reverse Complement Reverse Complement TGTGTGTRAWTAHWHDADACACAKKTKTKTHD DHKATGTKTKTGTD TGTGTGTRAWTAHWHDADAHABATGTKTKTDDD Direction: Forward Position #: 20 Overlap #: 13 Alignment: TGTGTGTRAWTAHWHDADACACAKKTKTKTHD- -------------------DHKATGTKTKTGTD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Reverse Complement TGTGTGTRAWTAHWHDADAHABATGTKTKTDDD WTTWWAAA TGTGTGTRAWTAHWTTWWAAABATGTKTKTDDD Direction: Forward Position #: 14 Overlap #: 8 Alignment: TGTGTGTRAWTAHWHDADAHABATGTKTKTDDD -------------WTTWWAAA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif TGTGTGTRAWTAHWTTWWAAABATGTKTKTDDD AWATAMA TGTGTGTRAWTAAWWTAHAAABATGTKTKTDDD Direction: Forward Position #: 13 Overlap #: 7 Alignment: TGTGTGTRAWTAHWTTWWAAABATGTKTKTDDD ------------AWATAMA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 11 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 sssCGssGCsss Original Motif Original Motif CCGCCGCC SSSCGSSGCSSS SSCCGCSGCCSS Direction: Backward Position #: 3 Overlap #: 8 Alignment: --CCGCCGCC-- SSSCGSSGCSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Reverse Complement Reverse Complement SSGGCSGCGGSS SSGGGCGGSGGCGSS SSGGGCGGSGSCGGCSGCGGSS Direction: Forward Position #: 11 Overlap #: 5 Alignment: ----------SSGGCSGCGGSS SSGGGCGGSGGCGSS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Reverse Complement SSGGGCGGSGSCGGCSGCGGSS GGGKGGGG SSGGGCGGGGKGGGSSGCGGSS Direction: Forward Position #: 8 Overlap #: 8 Alignment: SSGGGCGGSGSCGGCSGCGGSS -------GGGKGGGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Reverse Complement Original Motif SSCCGCSSCCCYCCCCGCCCSS BBCRCCYCCGBB SSCCGCSCSCCYCCSCVCCCSS Direction: Forward Position #: 6 Overlap #: 12 Alignment: SSCCGCSSCCCYCCCCGCCCSS -----BBCRCCYCCGBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCksCGss Combined Motif Reverse Complement Reverse Complement SSGGGVGSGGKGGSGSGCGGSS BBCGSRGCGVV SSGGGVSSSGSVGCGSSCGGSS Direction: Forward Position #: 7 Overlap #: 11 Alignment: SSGGGVGSGGKGGSGSGCGGSS ------BBCGSRGCGVV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif SSGGGVSSSGSVGCGSSCGGSS BBVGCCBVGGCCTV SSGGGVSGSSBVGSSCTCGGSS Direction: Forward Position #: 5 Overlap #: 14 Alignment: SSGGGVSSSGSVGCGSSCGGSS ----BBVGCCBVGGCCTV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Original Motif Reverse Complement SSGGGVSGSSBVGSSCTCGGSS GGAGGVMG GGRGGVVGSSBVGSSCTCGGSS Direction: Forward Position #: 1 Overlap #: 8 Alignment: SSGGGVSGSSBVGSSCTCGGSS GGAGGVMG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Original Motif Original Motif GGRGGVVGSSBVGSSCTCGGSS DGGGYGKGGC GGRGGDGGGBGDGGCCTCGGSS Direction: Forward Position #: 6 Overlap #: 10 Alignment: GGRGGVVGSSBVGSSCTCGGSS -----DGGGYGKGGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Original Motif Reverse Complement GGRGGDGGGBGDGGCCTCGGSS GGGGGYGGGG GGRGGDGGGGGBGGSSTCGGSS Direction: Forward Position #: 7 Overlap #: 10 Alignment: GGRGGDGGGBGDGGCCTCGGSS ------GGGGGYGGGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- INSM1 Combined Motif Reverse Complement Reverse Complement SSCCGASSCCVCCCCCDCCKCC MGCCCCCTGMCA SSCCVRCCCCCYBMCMDCCKCC Direction: Forward Position #: 5 Overlap #: 12 Alignment: SSCCGASSCCVCCCCCDCCKCC ----MGCCCCCTGMCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 12 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 ssCwGGCCwGCss Original Motif Original Motif AGGMCAGC BBCWGGCCAGCBB BBCAGGCCAGCBB Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---AGGMCAGC-- BBCWGGCCAGCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Reverse Complement BBGCTGGCCTGBB GTTGACCTTTGACCTTT GTTGACCKYTGRCCTKHB Direction: Forward Position #: 6 Overlap #: 12 Alignment: -----BBGCTGGCCTGBB GTTGACCTTTGACCTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif BHYAGGKCAKRGGTCAAC TTCAGCACCATGGACAGCKCC BHCAGSWCMDDGGWCARCKCC Direction: Forward Position #: 1 Overlap #: 18 Alignment: BHYAGGKCAKRGGTCAAC--- TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sgCTGGCCAGcs Original Motif Original Motif BHCAGSWCMDDGGWCARCKCC BBCTGGCCAGVV BBCWGGCCAGVGGWCARCKCC Direction: Forward Position #: 1 Overlap #: 12 Alignment: BHCAGSWCMDDGGWCARCKCC BBCTGGCCAGVV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement BBCWGGCCAGVGGWCARCKCC MGGTCAGGGTGACCTRDBHV BBCDGKCMVGVKGWCMDVDVCV Direction: Forward Position #: 3 Overlap #: 19 Alignment: BBCWGGCCAGVGGWCARCKCC- --MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif mkARGCCACG Original Motif Original Motif BBCDGKCMVGVKGWCMDVDVCV CKAGGCCACG HKAGGCCAHGVKGWCMDVDVCV Direction: Forward Position #: 1 Overlap #: 10 Alignment: BBCDGKCMVGVKGWCMDVDVCV CKAGGCCACG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement HKAGGCCAHGVKGWCMDVDVCV BAGGYCABHBTGACCKHV HBAGGYCAHBBTGACMKHDVCV Direction: Forward Position #: 2 Overlap #: 18 Alignment: HKAGGCCAHGVKGWCMDVDVCV -BAGGYCABHBTGACCKHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 13 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 tyTCTkTkTCyy Original Motif Reverse Complement GAGRCAGR VHGARAYAGAVV VHGAGACAGAVV Direction: Forward Position #: 3 Overlap #: 8 Alignment: --GAGRCAGR-- VHGARAYAGAVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGsCTCss Original Motif Reverse Complement VHGAGACAGAVV BBGAGSCGVV VVGAGRCRGRVV Direction: Forward Position #: 1 Overlap #: 10 Alignment: VHGAGACAGAVV BBGAGSCGVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 14 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Motif 27 Original Motif Original Motif GCRCACRC CAYACACACACACA CAYRCACACACACA Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---GCRCACRC--- CAYACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Reverse Complement Reverse Complement TGTGTGTGTGMKTG TGTGTGTGTGTG TGTGTGTGTGHGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGMKTG TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement TGTGTGTGTGHGTG TGTGTGTGTGTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGHGTG TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Original Motif TGTGTGTGTGTGTG DGGGYGKGGC TGKGTGTGKSTGTG Direction: Forward Position #: 1 Overlap #: 10 Alignment: TGTGTGTGTGTGTG DGGGYGKGGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Original Motif Reverse Complement TGKGTGTGKSTGTG TGTGTGKVTGTGTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGKGTGTGKSTGTG TGTGTGKVTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 Combined Motif Reverse Complement Reverse Complement CACACACACACACA YCGCCCACGCH CACRCMCACRCACA Direction: Forward Position #: 2 Overlap #: 11 Alignment: CACACACACACACA -YCGCCCACGCH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Original Motif CACRCMCACRCACA CCCCRCCC CCCCRCCCACRCACA Direction: Forward Position #: 2 Overlap #: 7 Alignment: -CACRCMCACRCACA CCCCRCCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ccCCmCACCcc Combined Motif Reverse Complement Reverse Complement TGTGMGTGGGKGGGG DDGGTGRGGBD TGDGGGTGGGGGDGG Direction: Forward Position #: 3 Overlap #: 11 Alignment: TGTGMGTGGGKGGGG --DDGGTGRGGBD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yrTGTGCACAyr Reverse Complement Reverse Complement CCHCCCCCACCCDCA BBTGTGCACAVV BBTGTGCMCACCCCCACCCDCA Direction: Forward Position #: 8 Overlap #: 5 Alignment: -------CCHCCCCCACCCDCA BBTGTGCACAVV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGrGCGss Original Motif Original Motif BBTGTGCMCACCCCCACCCDCA VSCGRGCGBV BBYGTGCSCVCCCCCACCCDCA Direction: Forward Position #: 1 Overlap #: 10 Alignment: BBTGTGCMCACCCCCACCCDCA VSCGRGCGBV------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 15 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 wyATTTTAww Reverse Complement Original Motif CATTTKC DHATTTTADD DMATTTTMDD Direction: Forward Position #: 2 Overlap #: 7 Alignment: -CATTTKC-- DHATTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Original Motif DMATTTTMDD DHATTTTTADD DHATTTTHADD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DMATTTTMDD- DHATTTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dwCTTTTCwy Original Motif Original Motif DHATTTTHADD DHCTTTTCHH DHMTTTTCHHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHATTTTHADD DHCTTTTCHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Reverse Complement Original Motif DHHGAAAAYHD WWAAAAAAWH DHWRAAAAYHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHHGAAAAYHD WWAAAAAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Original Motif Original Motif DHWRAAAAYHD DHAYAYAYRTGTGTRTDH DHAYAYAYRTGTGTDTRAAAAYHD Direction: Forward Position #: 14 Overlap #: 5 Alignment: -------------DHWRAAAAYHD DHAYAYAYRTGTGTRTDH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wtTTWwAAAaw Combined Motif Original Motif Reverse Complement DHAYAYAYRTGTGTDTRAAAAYHD DDTTTWAAAHH DHAYAYAYRTDTKTWWAAAAAYHD Direction: Forward Position #: 10 Overlap #: 11 Alignment: DHAYAYAYRTGTGTDTRAAAAYHD ---------DDTTTWAAAHH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Reverse Complement DHMTTTTTWWARAHAKKTKTKTHD TGRCCTKTGHCCKAB TDDCYTTTKHHMDABAKKTKTKTHD Direction: Forward Position #: 2 Overlap #: 14 Alignment: -DHMTTTTTWWARAHAKKTKTKTHD TGRCCTKTGHCCKAB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Original Motif TDDCYTTTKHHMDABAKKTKTKTHD BBTCTKTKTCHB TBTCTKTTTCHHDABAKKTKTKTHD Direction: Forward Position #: 1 Overlap #: 12 Alignment: TDDCYTTTKHHMDABAKKTKTKTHD BBTCTKTKTCHB------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Reverse Complement DHAYAYAYRTBTHDDGAAARAGABA AKGYYCAAAGRTCA VDRYHCAMAGRTCADGAAARAGABA Direction: Forward Position #: 1 Overlap #: 14 Alignment: DHAYAYAYRTBTHDDGAAARAGABA AKGYYCAAAGRTCA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yrTGTGCACAyr Original Motif Original Motif VDRYHCAMAGRTCADGAAARAGABA BVTGTGCACABV BVTGTGCACABVTCADGAAARAGABA Direction: Forward Position #: 2 Overlap #: 11 Alignment: -VDRYHCAMAGRTCADGAAARAGABA BVTGTGCACABV-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 16 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 RXRAVDR Original Motif Original Motif CTGDGTTC GGGTCAWBGRGTTCA GGGTCACTGRGTTCA Direction: Backward Position #: 2 Overlap #: 8 Alignment: ------CTGDGTTC- GGGTCAWBGRGTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif EWSR1-FLI1 Reverse Complement Original Motif TGAACKCAGTGACCC GGAAGGAAGGAAGGAAGG GGAAGGAAKGAASGMAGKGACCC Direction: Forward Position #: 9 Overlap #: 10 Alignment: --------TGAACKCAGTGACCC GGAAGGAAGGAAGGAAGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Reverse Complement GGGTCYCTYCSTTCYTTCCTTCC AKGYYCAAAGRTCA AKGYYCAARGGTCHCTYCSTTCYTTCCTTCC Direction: Forward Position #: 9 Overlap #: 6 Alignment: --------GGGTCYCTYCSTTCYTTCCTTCC AKGYYCAAAGRTCA----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Original Motif Reverse Complement AKGYYCAARGGTCHCTYCSTTCYTTCCTTCC VRVDGGHACAVDDKGTHCTDWH VRVVGGYHCAARGKKYHCTYHBTTCYTTCCTTCC Direction: Forward Position #: 4 Overlap #: 19 Alignment: ---AKGYYCAARGGTCHCTYCSTTCYTTCCTTCC VRVDGGHACAVDDKGTHCTDWH------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCTswGCCms Original Motif Reverse Complement VRVVGGYHCAARGKKYHCTYHBTTCYTTCCTTCC BDGGCTSAGCBV BDGGCTSAGCVDGYHCAARGKKYHCTYHBTTCYTTCCTTCC Direction: Forward Position #: 8 Overlap #: 5 Alignment: -------VRVVGGYHCAARGKKYHCTYHBTTCYTTCCTTCC BDGGCTSAGCBV----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif BDGGCTSAGCVDGYHCAARGKKYHCTYHBTTCYTTCCTTCC TTCAGCACCATGGACAGCKCC TTCAGCACCDKGSWCAGCDVSYHCAARGKKYHCTYHBTTCYTTCCTTCC Direction: Forward Position #: 9 Overlap #: 13 Alignment: --------BDGGCTSAGCVDGYHCAARGKKYHCTYHBTTCYTTCCTTCC TTCAGCACCATGGACAGCKCC---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Original Motif TTCAGCACCDKGSWCAGCDVSYHCAARGKKYHCTYHBTTCYTTCCTTCC BBTCTKTKTCHB BBTCTKTKTCAGCACCDKGSWCAGCDVSYHCAARGKKYHCTYHBTTCYTTCCTTCC Direction: Forward Position #: 8 Overlap #: 5 Alignment: -------TTCAGCACCDKGSWCAGCDVSYHCAARGKKYHCTYHBTTCYTTCCTTCC BBTCTKTKTCHB-------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rmACAGCAGsr Original Motif Reverse Complement BBTCTKTKTCAGCACCDKGSWCAGCDVSYHCAARGKKYHCTYHBTTCYTTCCTTCC DVCTGCTGTVB DVCTKCTGTDTCAGCACCDKGSWCAGCDVSYHCAARGKKYHCTYHBTTCYTTCCTTCC Direction: Forward Position #: 3 Overlap #: 9 Alignment: --BBTCTKTKTCAGCACCDKGSWCAGCDVSYHCAARGKKYHCTYHBTTCYTTCCTTCC DVCTGCTGTVB----------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Reverse Complement Original Motif GGAAGGAAKGAABDMAGHKYYCMTTGHMSVHGCTGWSCYDGGTGCTGADACAGYAGVD AAAGGTCAAAGGTCAAC GGAAGGAAKGAABDMAGHKYYCMTTGHMSVHGCTGWSCYDGGTGCTGADACAGYARAGGTCAAAGGTCAAC Direction: Forward Position #: 55 Overlap #: 4 Alignment: GGAAGGAAKGAABDMAGHKYYCMTTGHMSVHGCTGWSCYDGGTGCTGADACAGYAGVD------------- ------------------------------------------------------AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Reverse Complement Reverse Complement GTTGACCTTTGACCTMTKCTGTDTCAGCACCDKGSWCAGCDVSYHCAARGKKYHCTYHBTTCYTTCCTTCC TGTGTGTGTGTKTG TGTGTGTGTGKKTGACCTTTGACCTMTKCTGTDTCAGCACCDKGSWCAGCDVSYHCAARGKKYHCTYHBTTCYTTCCTTCC Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------GTTGACCTTTGACCTMTKCTGTDTCAGCACCDKGSWCAGCDVSYHCAARGKKYHCTYHBTTCYTTCCTTCC TGTGTGTGTGTKTG------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 17 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 EWSR1-FLI1 Reverse Complement Reverse Complement MTTCCK CCTTCCTTCCTTCCTTCC CCTTCCTTCCTTCCTTCC Direction: Backward Position #: 12 Overlap #: 6 Alignment: -MTTCCK----------- CCTTCCTTCCTTCCTTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rrAGGGGGArr Reverse Complement Original Motif GGAAGGAAGGAAGGAAGG VVAGGGGGAVV VVRGRRGGAAGGAAGGAAGG Direction: Forward Position #: 3 Overlap #: 9 Alignment: --GGAAGGAAGGAAGGAAGG VVAGGGGGAVV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dwCTTTTCwy Original Motif Reverse Complement VVRGRRGGAAGGAAGGAAGG DHGAAAAGHD DVGRAARGADGGAAGGAAGG Direction: Forward Position #: 1 Overlap #: 10 Alignment: VVRGRRGGAAGGAAGGAAGG DHGAAAAGHD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Reverse Complement Original Motif CCTTCCTTCCDTCKTTKCBH BAACGTCCGC BAMCKTCCKYCCDTCKTTKCBH Direction: Forward Position #: 3 Overlap #: 8 Alignment: --CCTTCCTTCCDTCKTTKCBH BAACGTCCGC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Original Motif Original Motif BAMCKTCCKYCCDTCKTTKCBH CYBCCTCC CHHCYTCCKYCCDTCKTTKCBH Direction: Forward Position #: 1 Overlap #: 8 Alignment: BAMCKTCCKYCCDTCKTTKCBH CYBCCTCC-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MZF1_5-13 Combined Motif Reverse Complement Original Motif DVGRAARGADGGMYGGAKGDHG BKAGGGGDAD DVGVRAGGRGGRAYGGAKGDHG Direction: Forward Position #: 4 Overlap #: 10 Alignment: DVGRAARGADGGMYGGAKGDHG ---BKAGGGGDAD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NFKB1 Reverse Complement Original Motif CHHCYTCCKTMCCMCCTKVCBH GGGGRTTCCCC GGGSDHYCYCCKTMCCMCCTKVCBH Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---CHHCYTCCKTMCCMCCTKVCBH GGGGRTTCCCC-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 13 Reverse Complement Original Motif DVGVRAGGRGGRAYGGMGKHDSCCC GAGRCAGR GAGRCAGGRGGRAYGGMGKHDSCCC Direction: Forward Position #: 1 Overlap #: 8 Alignment: DVGVRAGGRGGRAYGGMGKHDSCCC GAGRCAGR----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Reverse Complement GAGRCAGGRGGRAYGGMGKHDSCCC VHGARAYAGAVV VHGARAYAGRVDGRAYGGMGKHDSCCC Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GAGRCAGGRGGRAYGGMGKHDSCCC VHGARAYAGAVV--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ccCCmCACCcc Combined Motif Reverse Complement Original Motif GGGSDHYCYCCKTMCHBKCTKTMTCHB HBCCMCACCHH GGGSDHYBYCCBCACCBBCTKTMTCHB Direction: Forward Position #: 8 Overlap #: 11 Alignment: GGGSDHYCYCCKTMCHBKCTKTMTCHB -------HBCCMCACCHH--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 18 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Motif 2 Reverse Complement Reverse Complement TGTRT TGTGTGTG TGTRTGTG Direction: Backward Position #: 4 Overlap #: 5 Alignment: TGTRT--- TGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Reverse Complement Original Motif CACAMACA CACACACACACA CACACACACACA Direction: Forward Position #: 1 Overlap #: 8 Alignment: CACAMACA---- CACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Reverse Complement Reverse Complement TGTGTGTGTGTG TGTGTGTGTGTKTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGTG-- TGTGTGTGTGTKTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement TGTGTGTGTGTGTG TGTGTGTGTGTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGTGTG TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Original Motif Reverse Complement TGTGTGTGTGTGTG TGTGTGKVTGTGTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGTGTGTGTGTGTG TGTGTGKVTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Original Motif Reverse Complement TGTGTGTGTGTGTG TTGTTTTGTTT TTKKTKTGTBTGTGTG Direction: Forward Position #: 3 Overlap #: 9 Alignment: --TGTGTGTGTGTGTG TTGTTTTGTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- aaCAAAAACaa Combined Motif Original Motif Reverse Complement TTKKTKTGTBTGTGTG HTGTTTTTGHH TTKGTTTKTGTGTGTG Direction: Forward Position #: 2 Overlap #: 11 Alignment: TTKKTKTGTBTGTGTG -HTGTTTTTGHH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Original Motif Reverse Complement TTKGTTTKTGTGTGTG HDAMACACAKKTKTKTHD HDAMACACAKKTKTKKTTTKTGTGTGTG Direction: Forward Position #: 13 Overlap #: 6 Alignment: ------------TTKGTTTKTGTGTGTG HDAMACACAKKTKTKTHD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wrTGTATACAyw Combined Motif Original Motif Reverse Complement HDAMACACAKKTKTKKTTTKTGTGTGTG DHTGTATACADH HDAMACAHATGTDTDBWDTKTGTGTGTG Direction: Forward Position #: 8 Overlap #: 12 Alignment: HDAMACACAKKTKTKKTTTKTGTGTGTG -------DHTGTATACADH--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Original Motif CACACACARADWBDADACATDTGTRTDH AAAASAAA MAMACAMARADWBDADACATDTGTRTDH Direction: Forward Position #: 1 Overlap #: 8 Alignment: CACACACARADWBDADACATDTGTRTDH AAAASAAA-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 19 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Motif 13 Reverse Complement Reverse Complement CCWGSCT MCTGKCTC CCTGBCTC Direction: Forward Position #: 1 Overlap #: 7 Alignment: CCWGSCT- MCTGKCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif EWSR1-FLI1 Original Motif Reverse Complement CCTGBCTC CCTTCCTTCCTTCCTTCC CCTKCCTYCCTTCCTTCC Direction: Forward Position #: 1 Overlap #: 8 Alignment: CCTGBCTC---------- CCTTCCTTCCTTCCTTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCwGGCCwGCss Original Motif Original Motif CCTKCCTYCCTTCCTTCC BBCWGGCCAGCBB BBCWGGCCWGCCTYCCTTCCTTCC Direction: Forward Position #: 7 Overlap #: 7 Alignment: ------CCTKCCTYCCTTCCTTCC BBCWGGCCAGCBB----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Reverse Complement BBCWGGCCWGCCTYCCTTCCTTCC MGCCCCCTGMCA MGCCCCCWGRCMWGCCTYCCTTCCTTCC Direction: Forward Position #: 5 Overlap #: 8 Alignment: ----BBCWGGCCWGCCTYCCTTCCTTCC MGCCCCCTGMCA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGsCTCss Original Motif Original Motif MGCCCCCWGRCMWGCCTYCCTTCCTTCC VVCGSCTCBB VVCGCCYCCDGRCMWGCCTYCCTTCCTTCC Direction: Forward Position #: 3 Overlap #: 8 Alignment: --MGCCCCCWGRCMWGCCTYCCTTCCTTCC VVCGSCTCBB-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGsCwsCss Combined Motif Reverse Complement Original Motif GGAAGGAAGGKAGGCWRGMCDGGMGGCGVV BBCGSCWSCBB GGAAGGAAGGBMGSCWGSVCDGGMGGCGVV Direction: Forward Position #: 10 Overlap #: 11 Alignment: GGAAGGAAGGKAGGCWRGMCDGGMGGCGVV ---------BBCGSCWSCBB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Reverse Complement GGAAGGAAGGBMGSCWGSVCDGGMGGCGVV CKGGDTBDMMCTGG GGAAGGAAGSKVGBYWVVHCDGGMGGCGVV Direction: Forward Position #: 10 Overlap #: 14 Alignment: GGAAGGAAGGBMGSCWGSVCDGGMGGCGVV ---------CKGGDTBDMMCTGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif VVCGCCYCCDGDVVWKBCVRSCTTCCTTCC TTCAGCACCATGGACAGCKCC TBCMGCMCCMHGGACAGCBCVSCTTCCTTCC Direction: Forward Position #: 2 Overlap #: 20 Alignment: -VVCGCCYCCDGDVVWKBCVRSCTTCCTTCC TTCAGCACCATGGACAGCKCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Reverse Complement Reverse Complement GGAAGGAAGSVGBGCTGTCCHRGGRGCYGVA GGGGGYGGGG GGAAGGAAGSGGGGCKGKSCHRGGRGCYGVA Direction: Forward Position #: 10 Overlap #: 10 Alignment: GGAAGGAAGSVGBGCTGTCCHRGGRGCYGVA ---------GGGGGYGGGG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sgCTGGCCAGcs Reverse Complement Original Motif TBCMGCMCCMHGSYCYGCCCCSCTTCCTTCC BBCTGGCCAGVV BBCTGGCCAGBVCCMHGSYCYGCCCCSCTTCCTTCC Direction: Forward Position #: 6 Overlap #: 7 Alignment: -----TBCMGCMCCMHGSYCYGCCCCSCTTCCTTCC BBCTGGCCAGVV------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 20 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 20 ssGCTswGCCms Original Motif Original Motif CTCTGY VBGCTSAGCCHB VBGCTCWGCCHB Direction: Forward Position #: 4 Overlap #: 6 Alignment: ---CTCTGY--- VBGCTSAGCCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Reverse Complement VBGCTCWGCCHB TTCTSTST VTKCTCTGYCHB Direction: Forward Position #: 2 Overlap #: 8 Alignment: VBGCTCWGCCHB -TTCTSTST--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Reverse Complement VTKCTCTGYCHB GTTGACCTTTGACCTTT GTTGACCTTTGACCTKYTCTGYCHB Direction: Forward Position #: 14 Overlap #: 4 Alignment: -------------VTKCTCTGYCHB GTTGACCTTTGACCTTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement GTTGACCTTTGACCTKYTCTGYCHB TGRCCTKTGHCCKAB GTTGACCTTTGACCKDBTCTGYCHB Direction: Forward Position #: 3 Overlap #: 15 Alignment: GTTGACCTTTGACCTKYTCTGYCHB --TGRCCTKTGHCCKAB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Reverse Complement Original Motif BDGMCAGABDRGGTCAAAGGTCAAC CCGCCGCC CCGCBGCCAGABDRGGTCAAAGGTCAAC Direction: Forward Position #: 4 Overlap #: 5 Alignment: ---BDGMCAGABDRGGTCAAAGGTCAAC CCGCCGCC-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCKCwsCGss Original Motif Reverse Complement CCGCBGCCAGABDRGGTCAAAGGTCAAC VBCGSWGCGVB VCCGSHGCSVSABDRGGTCAAAGGTCAAC Direction: Forward Position #: 2 Overlap #: 10 Alignment: -CCGCBGCCAGABDRGGTCAAAGGTCAAC VBCGSWGCGVB------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif GTTGACCTTTGACCKDBTSBSGCHSCGGV TGAMCTTTGMMCYT TGAMCKTTGACCTTTGACCKDBTSBSGCHSCGGV Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----GTTGACCTTTGACCKDBTSBSGCHSCGGV TGAMCTTTGMMCYT-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Reverse Complement TGAMCKTTGACCTTTGACCKDBTSBSGCHSCGGV VHGARAYAGAVV VHGARAYWGAMCKTTGACCTTTGACCKDBTSBSGCHSCGGV Direction: Forward Position #: 8 Overlap #: 5 Alignment: -------TGAMCKTTGACCTTTGACCKDBTSBSGCHSCGGV VHGARAYAGAVV----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Reverse Complement Reverse Complement VCCGSHGCSVSABDRGGTCAAAGGTCAARGRTCWKTKTCHB TGMYCTTTGBCCK TGVCCKBTGCSCBABDRGGTCAAAGGTCAARGRTCWKTKTCHB Direction: Forward Position #: 3 Overlap #: 11 Alignment: --VCCGSHGCSVSABDRGGTCAAAGGTCAARGRTCWKTKTCHB TGMYCTTTGBCCK------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Original Motif Reverse Complement TGVCCKBTGCSCBABDRGGTCAAAGGTCAARGRTCWKTKTCHB GCGGACGTTV GYGGMCGTTGCSCBABDRGGTCAAAGGTCAARGRTCWKTKTCHB Direction: Forward Position #: 2 Overlap #: 9 Alignment: -TGVCCKBTGCSCBABDRGGTCAAAGGTCAARGRTCWKTKTCHB GCGGACGTTV---------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 21 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Motif 15 Original Motif Reverse Complement ATKTM CATTTKC CATTTBC Direction: Forward Position #: 2 Overlap #: 5 Alignment: -ATKTM- CATTTKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Original Motif Reverse Complement CATTTBC TATRTA YATDTAC Direction: Forward Position #: 1 Overlap #: 6 Alignment: CATTTBC TATRTA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Original Motif YATDTAC DHATTTTTADD DHATTTWYADD Direction: Forward Position #: 2 Overlap #: 7 Alignment: -YATDTAC--- DHATTTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wyATTTTAww Original Motif Original Motif DHATTTWYADD DHATTTTADD DHATTTTHADD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHATTTWYADD DHATTTTADD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Reverse Complement Reverse Complement DDTHAAAATHD VHGARAYAGAVV HHKAAAHAKAHV Direction: Forward Position #: 1 Overlap #: 11 Alignment: DDTHAAAATHD- VHGARAYAGAVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Reverse Complement Reverse Complement BHTRTHTTTYHH DBTATGTAHH HBTATGTWHHHH Direction: Forward Position #: 1 Overlap #: 10 Alignment: BHTRTHTTTYHH DBTATGTAHH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Original Motif Reverse Complement HBTATGTWHHHH HHTWTTTADD HHTATTTAHHHH Direction: Forward Position #: 1 Overlap #: 10 Alignment: HBTATGTWHHHH HHTWTTTADD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Reverse Complement HHTATTTAHHHH HWTTTTTTWW HHTWTTTWWHHH Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHTATTTAHHHH HWTTTTTTWW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Original Motif HHHWWAAAWAHH HVCATGCATGCABD HVCATGCATGCAHDWAAAWAHH Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------HHHWWAAAWAHH HVCATGCATGCABD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wrTGTATACAyw Reverse Complement Original Motif HHTWTTTWDHTGCATGCATGBH HDTGTATACAHD HDTKTWTAHATDCATGCATGBH Direction: Forward Position #: 1 Overlap #: 12 Alignment: HHTWTTTWDHTGCATGCATGBH HDTGTATACAHD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 22 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 22 Motif 11 Original Motif Original Motif CMGCRGC CCGCCGCC CCGCVGCC Direction: Forward Position #: 1 Overlap #: 7 Alignment: CMGCRGC- CCGCCGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rmACAGCAGsr Reverse Complement Reverse Complement GGCBGCGG DVCTGCTGTVB GGCTGCKGTVB Direction: Forward Position #: 1 Overlap #: 8 Alignment: GGCBGCGG--- DVCTGCTGTVB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCksCGss Reverse Complement Reverse Complement VVACRGCAGCC BBCGSRGCGVV BVCRCRGCRGSC Direction: Forward Position #: 2 Overlap #: 10 Alignment: -VVACRGCAGCC BBCGSRGCGVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGsCwsCss Reverse Complement Original Motif GSCMGCKGMGVB BBCGSCWSCBB BVCSGCTGCVBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: GSCMGCKGMGVB BBCGSCWSCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif BBVGCAGCSGVB TTCAGCACCATGGACAGCKCC TTCAGCACCATGGACAGCDCVCAGCSGVB Direction: Forward Position #: 18 Overlap #: 4 Alignment: -----------------BBVGCAGCSGVB TTCAGCACCATGGACAGCKCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss Combined Motif Reverse Complement Reverse Complement BVCSGCTGVGHGCTGTCCATGGTGCTGAA SSSGCSSCGSSS BVCSGCTGSSSGCKGYSCVBGGTGCTGAA Direction: Forward Position #: 9 Overlap #: 12 Alignment: BVCSGCTGVGHGCTGTCCATGGTGCTGAA --------SSSGCSSCGSSS--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wsAGCTACwy Original Motif Reverse Complement BVCSGCTGSSSGCKGYSCVBGGTGCTGAA VHGTAGCTVD VBGYAGCTSVSSGCKGYSCVBGGTGCTGAA Direction: Forward Position #: 2 Overlap #: 9 Alignment: -BVCSGCTGSSSGCKGYSCVBGGTGCTGAA VHGTAGCTVD-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Original Motif TTCAGCACCVVGSKCRGCSSVSAGCTMCVB CCCCRCCC TTCMSCACCCVGSKCRGCSSVSAGCTMCVB Direction: Forward Position #: 3 Overlap #: 8 Alignment: TTCAGCACCVVGSKCRGCSSVSAGCTMCVB --CCCCRCCC-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Original Motif Original Motif TTCMSCACCCVGSKCRGCSSVSAGCTMCVB BAACGTCCGC BAACGTCCGCACCCVGSKCRGCSSVSAGCTMCVB Direction: Forward Position #: 5 Overlap #: 6 Alignment: ----TTCMSCACCCVGSKCRGCSSVSAGCTMCVB BAACGTCCGC------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCKCwsCGss Combined Motif Original Motif Original Motif BAACGTCCGCACCCVGSKCRGCSSVSAGCTMCVB BVCGCWSCGBV BAACGTCCGCACCVCGCTSMGCBSVSAGCTMCVB Direction: Forward Position #: 13 Overlap #: 11 Alignment: BAACGTCCGCACCCVGSKCRGCSSVSAGCTMCVB ------------BVCGCWSCGBV----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 23 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Motif 6 Reverse Complement Reverse Complement GGGGMGGG GGGKGGGG GGGGSGGG Direction: Forward Position #: 1 Overlap #: 8 Alignment: GGGGMGGG GGGKGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Reverse Complement Original Motif CCCSCCCC CCCCKCCCCC CCCCYCCCCC Direction: Forward Position #: 1 Overlap #: 8 Alignment: CCCSCCCC-- CCCCKCCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Reverse Complement CCCCYCCCCC GCCYCMCCCD SCCCCCCCCH Direction: Forward Position #: 1 Overlap #: 10 Alignment: CCCCYCCCCC GCCYCMCCCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Reverse Complement Reverse Complement DGGGGGGGGS DDGGTGRGGBD DGGGKGGGGBD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DGGGGGGGGS- DDGGTGRGGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Reverse Complement Original Motif HBCCCCRCCCH SSCGCCSCCGCCCSS SSCGCCSCCGCCCCCCRCCCH Direction: Forward Position #: 11 Overlap #: 5 Alignment: ----------HBCCCCRCCCH SSCGCCSCCGCCCSS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Original Motif Original Motif SSCGCCSCCGCCCCCCRCCCH BBCRCCYCCGBB SSCGCCCVCBCCCSVCRCCCH Direction: Forward Position #: 5 Overlap #: 12 Alignment: SSCGCCSCCGCCCCCCRCCCH ----BBCRCCYCCGBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 Combined Motif Reverse Complement Original Motif DGGGKGVSGGGBGVGGGCGSS HGCGTGGGCGK DGGGKBGCGKGGGCGGGCGSS Direction: Forward Position #: 6 Overlap #: 11 Alignment: DGGGKGVSGGGBGVGGGCGSS -----HGCGTGGGCGK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Original Motif Original Motif DGGGKBGCGKGGGCGGGCGSS VVGCSGGGCGBB DGGGKBGSSKGGGCGBGCGSS Direction: Forward Position #: 6 Overlap #: 12 Alignment: DGGGKBGCGKGGGCGGGCGSS -----VVGCSGGGCGBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Original Motif SSCGCBCGCCCYSSCBRCCCH CCCCMAAMCAMCCMCMMMCV SSCGCBCGCCCCCMMMVCMCCCMCMMMCV Direction: Forward Position #: 10 Overlap #: 12 Alignment: SSCGCBCGCCCYSSCBRCCCH-------- ---------CCCCMAAMCAMCCMCMMMCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCksCGss Combined Motif Reverse Complement Original Motif BGRRRGRGGGYGBYYRGGGGGCGBGCGSS VVCGCKSCGBB BGRRRGRGVGCGCBBCGBGGGCGBGCGSS Direction: Forward Position #: 9 Overlap #: 11 Alignment: BGRRRGRGGGYGBYYRGGGGGCGBGCGSS --------VVCGCKSCGBB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 24 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 24 Motif 9 Original Motif Original Motif CTGGGA GCTGGGAW GCTGGGAW Direction: Forward Position #: 2 Overlap #: 6 Alignment: -CTGGGA- GCTGGGAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement WTCCCAGC GGYGCTGTCCATGGTGCTGAA GGYGCTDTCCCWGSTGCTGAA Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------WTCCCAGC------- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rrAGGGGGArr Original Motif Original Motif GGYGCTDTCCCWGSTGCTGAA VVAGGGGGAVV VVAGGGGGRHGCTDTCCCWGSTGCTGAA Direction: Forward Position #: 8 Overlap #: 4 Alignment: -------GGYGCTDTCCCWGSTGCTGAA VVAGGGGGAVV----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MZF1_1-4 Combined Motif Reverse Complement Original Motif TTCAGCASCWGGGAHAGCDKCCCCCTVV BGGGGA TTCAGCASCWDGGRGAGCDKCCCCCTVV Direction: Forward Position #: 11 Overlap #: 6 Alignment: TTCAGCASCWGGGAHAGCDKCCCCCTVV ----------BGGGGA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Original Motif Original Motif TTCAGCASCWDGGRGAGCDKCCCCCTVV HVCCAGTGCABD HBYCAGYRCMHDGGRGAGCDKCCCCCTVV Direction: Forward Position #: 2 Overlap #: 11 Alignment: -TTCAGCASCWDGGRGAGCDKCCCCCTVV HVCCAGTGCABD----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Reverse Complement Reverse Complement VVAGGGGGRHGCTCMCCHHRGKMCTGKVD BGRRRGRGGRTGRTTYGGGG BGRRRGRGGRTGRBWKGGGGRHGCTCMCCHHRGKMCTGKVD Direction: Forward Position #: 13 Overlap #: 8 Alignment: ------------VVAGGGGGRHGCTCMCCHHRGKMCTGKVD BGRRRGRGGRTGRTTYGGGG--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Reverse Complement HBYCAGYRCMHDGGRGAGCDKCCCCYWVMCAMCCMCMMMCB GAACDCAG GAACBCAGYRCMHDGGRGAGCDKCCCCYWVMCAMCCMCMMMCB Direction: Forward Position #: 3 Overlap #: 6 Alignment: --HBYCAGYRCMHDGGRGAGCDKCCCCYWVMCAMCCMCMMMCB GAACDCAG----------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- INSM1 Combined Motif Original Motif Reverse Complement GAACBCAGYRCMHDGGRGAGCDKCCCCYWVMCAMCCMCMMMCB MGCCCCCTGMCA GAACBCAGYRCMHDGGRGAGMDYCCCCHDMCMAMCCMCMMMCB Direction: Forward Position #: 21 Overlap #: 12 Alignment: GAACBCAGYRCMHDGGRGAGCDKCCCCYWVMCAMCCMCMMMCB --------------------MGCCCCCTGMCA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfp423 Combined Motif Original Motif Original Motif GAACBCAGYRCMHDGGRGAGMDYCCCCHDMCMAMCCMCMMMCB GSMMCCYARGGKKKC GAACBCAGYRCMHDGGRGAGMGSCCCCYWRSGRBCCMCMMMCB Direction: Forward Position #: 22 Overlap #: 15 Alignment: GAACBCAGYRCMHDGGRGAGMDYCCCCHDMCMAMCCMCMMMCB ---------------------GSMMCCYARGGKKKC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sgCTGGCCAGcs Original Motif Reverse Complement GAACBCAGYRCMHDGGRGAGMGSCCCCYWRSGRBCCMCMMMCB VVCTGGCCAGBB VVCTGGCSARBBCAGYRCMHDGGRGAGMGSCCCCYWRSGRBCCMCMMMCB Direction: Forward Position #: 8 Overlap #: 5 Alignment: -------GAACBCAGYRCMHDGGRGAGMGSCCCCYWRSGRBCCMCMMMCB VVCTGGCCAGBB-------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 25 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 25 Motif 27 Original Motif Original Motif CACACAVRCACACA CAYACACACACACA CACACACACACACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACAVRCACACA CAYACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Original Motif Original Motif CACACACACACACA HACAYAYACATRHD CACACACACAYACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACACACACACA HACAYAYACATRHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Original Motif CACACACACAYACA CCCCMAAMCAMCCMCMMMCV CCCCMAAMCAMCCMCACACACACAYACA Direction: Forward Position #: 15 Overlap #: 6 Alignment: --------------CACACACACAYACA CCCCMAAMCAMCCMCMMMCV-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Combined Motif Reverse Complement Original Motif TGTKTGTGTGTGTGRGGRTGRTTYGGGG DHAYAYAYRTGTGTRTDH TGTDTRTRYRYRTGKGKRTGDTTYGGGG Direction: Forward Position #: 4 Overlap #: 18 Alignment: TGTKTGTGTGTGTGRGGRTGRTTYGGGG ---DHAYAYAYRTGTGTRTDH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAAAAAAAAAA Combined Motif Original Motif Original Motif TGTDTRTRYRYRTGKGKRTGDTTYGGGG HVCATGCATGCABD TGTDTRYDCATGYRTGBATRDTTYGGGG Direction: Forward Position #: 7 Overlap #: 14 Alignment: TGTDTRTRYRYRTGKGKRTGDTTYGGGG ------HVCATGCATGCABD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Reverse Complement Reverse Complement CCCCMAAHMATBCAKKCATGDMMAHACA AAAAAAACAAARRA CCCCAAAAAADBMAWDVATGDMMAHACA Direction: Forward Position #: 5 Overlap #: 14 Alignment: CCCCMAAHMATBCAKKCATGDMMAHACA ----AAAAAAACAAARRA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRAVDR Original Motif Reverse Complement CCCCAAAAAADBMAWDVATGDMMAHACA TGAACKCBWTGACCC TGAACKCBWTGMCCCAAAAAADBMAWDVATGDMMAHACA Direction: Forward Position #: 12 Overlap #: 4 Alignment: -----------CCCCAAAAAADBMAWDVATGDMMAHACA TGAACKCBWTGACCC------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Reverse Complement Reverse Complement TGTDTRYDCATBHWTYBDTTTTTTGGGYCAWBGYGTTCA SSGGGCGGSGGCGSS SSGGGCGGSGGYGKBTRYDCATBHWTYBDTTTTTTGGGYCAWBGYGTTCA Direction: Forward Position #: 12 Overlap #: 4 Alignment: -----------TGTDTRYDCATBHWTYBDTTTTTTGGGYCAWBGYGTTCA SSGGGCGGSGGCGSS----------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACACACACACA Combined Motif Original Motif Reverse Complement SSGGGCGGSGGYGKBTRYDCATBHWTYBDTTTTTTGGGYCAWBGYGTTCA TGTGTGTGTGTG SSGGGCGGSGGTGTGTGTGYRTBHWTYBDTTTTTTGGGYCAWBGYGTTCA Direction: Forward Position #: 12 Overlap #: 12 Alignment: SSGGGCGGSGGYGKBTRYDCATBHWTYBDTTTTTTGGGYCAWBGYGTTCA -----------TGTGTGTGTGTG--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACACACACACA Combined Motif Reverse Complement Original Motif TGAACKCBWTGMCCCAAAAAADBMAWDBAMMCACACACACCSCCGCCCSS CACACACACACA TGAACKCBWTGMCCCAAAAAADBMAWDBACACACACACACMSCCGCCCSS Direction: Forward Position #: 30 Overlap #: 12 Alignment: TGAACKCBWTGMCCCAAAAAADBMAWDBAMMCACACACACCSCCGCCCSS -----------------------------CACACACACACA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 26 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 yayAyAyACATrya Original Motif Reverse Complement TKKTTTGTTTTTTT DHKATGTKTKTGTD TDKWTKKKTTTKTT Direction: Backward Position #: 1 Overlap #: 14 Alignment: TKKTTTGTTTTTTT DHKATGTKTKTGTD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 27 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Motif 25 Original Motif Original Motif CAYACACACACACA CACACAVRCACACA CACACACACACACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CAYACACACACACA CACACAVRCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Original Motif Original Motif CACACACACACACA HACAYAYACATRHD CACACACACAYACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACACACACACA HACAYAYACATRHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Original Motif CACACACACAYACA CCCCMAAMCAMCCMCMMMCV CCCCMAAMCAMCCMCACACACACAYACA Direction: Forward Position #: 15 Overlap #: 6 Alignment: --------------CACACACACAYACA CCCCMAAMCAMCCMCMMMCV-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Combined Motif Reverse Complement Original Motif TGTKTGTGTGTGTGRGGRTGRTTYGGGG DHAYAYAYRTGTGTRTDH TGTDTRTRYRYRTGKGKRTGDTTYGGGG Direction: Forward Position #: 4 Overlap #: 18 Alignment: TGTKTGTGTGTGTGRGGRTGRTTYGGGG ---DHAYAYAYRTGTGTRTDH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAAAAAAAAAA Combined Motif Original Motif Original Motif TGTDTRTRYRYRTGKGKRTGDTTYGGGG HVCATGCATGCABD TGTDTRYDCATGYRTGBATRDTTYGGGG Direction: Forward Position #: 7 Overlap #: 14 Alignment: TGTDTRTRYRYRTGKGKRTGDTTYGGGG ------HVCATGCATGCABD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Reverse Complement Reverse Complement CCCCMAAHMATBCAKKCATGDMMAHACA AAAAAAACAAARRA CCCCAAAAAADBMAWDVATGDMMAHACA Direction: Forward Position #: 5 Overlap #: 14 Alignment: CCCCMAAHMATBCAKKCATGDMMAHACA ----AAAAAAACAAARRA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACACACACACA Combined Motif Original Motif Original Motif CCCCAAAAAADBMAWDVATGDMMAHACA CACACACACACA CCMCAMACAMACAAWDVATGDMMAHACA Direction: Forward Position #: 2 Overlap #: 12 Alignment: CCCCAAAAAADBMAWDVATGDMMAHACA -CACACACACACA--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACACACACACA Combined Motif Original Motif Original Motif CCMCAMACAMACAAWDVATGDMMAHACA CACACACACACA CCMCAMACACACAMAVAMWGDMMAHACA Direction: Forward Position #: 8 Overlap #: 12 Alignment: CCMCAMACAMACAAWDVATGDMMAHACA -------CACACACACACA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tyTCTkTkTCyy Combined Motif Original Motif Reverse Complement CCMCAMACACACAMAVAMWGDMMAHACA VHGARAYAGAVV CCMCAMASAMACAGAVAMWGDMMAHACA Direction: Forward Position #: 6 Overlap #: 12 Alignment: CCMCAMACACACAMAVAMWGDMMAHACA -----VHGARAYAGAVV----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Reverse Complement CCMCAMASAMACAGAVAMWGDMMAHACA MGCCCCCTGMCA MVCCCMCWGACACAGAVAMWGDMMAHACA Direction: Forward Position #: 2 Overlap #: 11 Alignment: -CCMCAMASAMACAGAVAMWGDMMAHACA MGCCCCCTGMCA----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 28 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx ssCGCCsCCrCCCss Original Motif Original Motif BBVGCCBVGGCCTV SSCGCCSCCGCCCSS SBCGCCSMSGCCYVS Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBVGCCBVGGCCTV- SSCGCCSCCGCCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement SBCGCCSMSGCCYVS MSGKKRCGCWDCABTGBBCD MSGKKRCGCWDCABBBCDCBSMSGCCYVS Direction: Forward Position #: 15 Overlap #: 6 Alignment: --------------SBCGCCSMSGCCYVS MSGKKRCGCWDCABTGBBCD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif MSGKKRCGCWDCABBBCDCBSMSGCCYVS VHRGGTCABDBTGMCCTB MSGKKVMRSGTCABBBYGMCCHSGCCYVS Direction: Forward Position #: 6 Overlap #: 18 Alignment: MSGKKRCGCWDCABBBCDCBSMSGCCYVS -----VHRGGTCABDBTGMCCTB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif MSGKKVMRSGTCABBBYGMCCHSGCCYVS VDBHMAGGTCACCCTGACCY MSGKKVMRSGTCABBBBDVCCHGGYCHVCCTGACCY Direction: Forward Position #: 17 Overlap #: 13 Alignment: MSGKKVMRSGTCABBBYGMCCHSGCCYVS------- ----------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Reverse Complement Original Motif MGGTCAGGVHGKCCHGGVHVBBBTGACSMRBRYCSR CCAGYYHVADCCRG MGGTCAGGVHGKCCHGGVHVBCCWGHYBVRDCCMGR Direction: Forward Position #: 22 Overlap #: 14 Alignment: MGGTCAGGVHGKCCHGGVHVBBBTGACSMRBRYCSR ---------------------CCAGYYHVADCCRG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfp423 Combined Motif Original Motif Reverse Complement MGGTCAGGVHGKCCHGGVHVBCCWGHYBVRDCCMGR GYRYCCMTKGGYRSC MGGTCAGGGBGBCCHDKGGHVSCWGHYBVRDCCMGR Direction: Forward Position #: 9 Overlap #: 15 Alignment: MGGTCAGGVHGKCCHGGVHVBCCWGHYBVRDCCMGR --------GYRYCCMTKGGYRSC------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Original Motif MCRGGDKVBKHCWGSVDCCYDDGGVCVCCCTGACCY GGGGCCCAAGGGGG MCRGGDKVBKHCWGGGGCCCWVGGGSGCCCTGACCY Direction: Forward Position #: 14 Overlap #: 14 Alignment: MCRGGDKVBKHCWGSVDCCYDDGGVCVCCCTGACCY -------------GGGGCCCAAGGGGG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement MCRGGDKVBKHCWGGGGCCCWVGGGSGCCCTGACCY GGYGCTGTCCATGGTGCTGAA GGYGCTGTCCVKGGTVCTDMDGGGGCCCWVGGGSGCCCTGACCY Direction: Forward Position #: 9 Overlap #: 13 Alignment: --------MCRGGDKVBKHCWGGGGCCCWVGGGSGCCCTGACCY GGYGCTGTCCATGGTGCTGAA----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Original Motif GGYGCTGTCCVKGGTVCTDMDGGGGCCCWVGGGSGCCCTGACCY HWDAGHACRHHVTGTHCCHVMV GGYGCTGTCCVKGGTVCTDMDGGGGCCHWAGRRCRHHVTGWCCYHVMV Direction: Forward Position #: 27 Overlap #: 18 Alignment: GGYGCTGTCCVKGGTVCTDMDGGGGCCCWVGGGSGCCCTGACCY---- --------------------------HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement GGYGCTGTCCVKGGTVCTDMDGGGGCCHWAGRRCRHHVTGWCCYHVMV TGRCCTKTGHCCKAB GGYGCTGTCCVKGGTVCTDMDGGGGCCHWAGRDSRCCBTKDCCCDVVV Direction: Forward Position #: 33 Overlap #: 15 Alignment: GGYGCTGTCCVKGGTVCTDMDGGGGCCHWAGRRCRHHVTGWCCYHVMV --------------------------------TGRCCTKTGHCCKAB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 29 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfp423 Ar Original Motif Original Motif GSMMCCYARGGKKKC HWDAGHACRHHVTGTHCCHVMV HWDRGMACMYHRKGTDCCHVMV Direction: Backward Position #: 5 Overlap #: 15 Alignment: ---GSMMCCYARGGKKKC---- HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement HWDRGMACMYHRKGTDCCHVMV MSGKKRCGCWDCABTGBBCD HWDRGMACMYMVGGKDCVCDHCABTGBBCD Direction: Forward Position #: 11 Overlap #: 12 Alignment: HWDRGMACMYHRKGTDCCHVMV-------- ----------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Reverse Complement HGVBCABTGHDGVGDRCCVYKRGTYCMDWH GGYGCTGTCCATGGTGCTGAA HGVBCABTGDDBGSTRYCCHKGGTBCHKAH Direction: Forward Position #: 10 Overlap #: 21 Alignment: HGVBCABTGHDGVGDRCCVYKRGTYCMDWH ---------GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Combined Motif Reverse Complement Original Motif HTYHGBACCRHGGMMASCBHHCABTGBBCD DHAYAYAYRTGTGTRTDH HTYHGBACCRHGGMMASCVHVCABWBVBVTGTRTDH Direction: Forward Position #: 19 Overlap #: 12 Alignment: HTYHGBACCRHGGMMASCBHHCABTGBBCD------ ------------------DHAYAYAYRTGTGTRTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRAVDR Original Motif Reverse Complement HTYHGBACCRHGGMMASCVHVCABWBVBVTGTRTDH TGAACKCBWTGACCC TGAACKHBHKGACCMHGGMMASCVHVCABWBVBVTGTRTDH Direction: Forward Position #: 6 Overlap #: 10 Alignment: -----HTYHGBACCRHGGMMASCVHVCABWBVBVTGTRTDH TGAACKCBWTGACCC-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Reverse Complement TGAACKHBHKGACCMHGGMMASCVHVCABWBVBVTGTRTDH CCCCCTTGGGCCCC TGMMCCCBWKGRCCCCGGMMASCVHVCABWBVBVTGTRTDH Direction: Forward Position #: 3 Overlap #: 14 Alignment: TGAACKHBHKGACCMHGGMMASCVHVCABWBVBVTGTRTDH --CCCCCTTGGGCCCC------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif HDAMACAVVBBWBTGBDBGSTRYCCGGGGKCYWVGGGYYCA BBVGCCBVGGCCTV HDAMACAVVBBWBBBBDBBSDGKCCKGGGKCYWVGGGYYCA Direction: Forward Position #: 14 Overlap #: 14 Alignment: HDAMACAVVBBWBTGBDBGSTRYCCGGGGKCYWVGGGYYCA -------------BBVGCCBVGGCCTV-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement HDAMACAVVBBWBBBBDBBSDGKCCKGGGKCYWVGGGYYCA MGGTCAGGGTGACCTRDBHV HDAMACAVVBBWBBBBDBBSDGKCCKVGGTCMDVGKGHCCDRDBHV Direction: Forward Position #: 27 Overlap #: 15 Alignment: HDAMACAVVBBWBBBBDBBSDGKCCKGGGKCYWVGGGYYCA----- --------------------------MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Reverse Complement VDBHMDGGHCRCVDYGACCBRGGYCDSBBHBBVBWBVBVTGTRTDH BGRRRGRGGRTGRTTYGGGG VDBHHDGGDSRVGRTGRYYYGGGVCDSBBHBBVBWBVBVTGTRTDH Direction: Forward Position #: 5 Overlap #: 20 Alignment: VDBHMDGGHCRCVDYGACCBRGGYCDSBBHBBVBWBVBVTGTRTDH ----BGRRRGRGGRTGRTTYGGGG---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Original Motif Original Motif VDBHHDGGDSRVGRTGRYYYGGGVCDSBBHBBVBWBVBVTGTRTDH BBCRCCYCCGBB VDBHHDGGDSRVGRTGRYYYGGGVCDSBBBBCRCHBHCGBGTRTDH Direction: Forward Position #: 30 Overlap #: 12 Alignment: VDBHHDGGDSRVGRTGRYYYGGGVCDSBBHBBVBWBVBVTGTRTDH -----------------------------BBCRCCYCCGBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 30 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ZEB1 RORA_1 Original Motif Reverse Complement CACCTD TGACCTDVWT TSACCTDVWT Direction: Backward Position #: 4 Overlap #: 6 Alignment: -CACCTD--- TGACCTDVWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif TSACCTDVWT TTCAGCACCATGGACAGCKCC TTCAKSACCWDGRWCAGCKCC Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----TSACCTDVWT------- TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Original Motif Original Motif TTCAKSACCWDGRWCAGCKCC HBCCMCACCHH BBCMBCACCHHGRWCAGCKCC Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTCAKSACCWDGRWCAGCKCC HBCCMCACCHH---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rrAGGGGGArr Original Motif Reverse Complement BBCMBCACCHHGRWCAGCKCC VVTCCCCCTVV HHYCCCMCYHHGRWCAGCKCC Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBCMBCACCHHGRWCAGCKCC VVTCCCCCTVV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb Combined Motif Original Motif Reverse Complement HHYCCCMCYHHGRWCAGCKCC CACGTG HHYCCCACKTVGRWCAGCKCC Direction: Forward Position #: 6 Overlap #: 6 Alignment: HHYCCCMCYHHGRWCAGCKCC -----CACGTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Arnt Combined Motif Original Motif Reverse Complement HHYCCCACKTVGRWCAGCKCC CACGTG HHYCCCACGTGGRWCAGCKCC Direction: Forward Position #: 6 Overlap #: 6 Alignment: HHYCCCACKTVGRWCAGCKCC -----CACGTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 31 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFAP2A Zfx Reverse Complement Original Motif SCMVBBGGC BBVGCCBVGGCCTV BBVSCCBVGGSCTV Direction: Backward Position #: 3 Overlap #: 9 Alignment: ---SCMVBBGGC-- BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Original Motif Original Motif BBVSCCBVGGSCTV VVGCSGGGCGBB BVVGCSGRGSGCTV Direction: Forward Position #: 2 Overlap #: 12 Alignment: BBVSCCBVGGSCTV -VVGCSGGGCGBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Reverse Complement VAGCSCMCSGCVVB CCCCCTTGGGCCCC CMSCCYHVGGCCCC Direction: Forward Position #: 1 Overlap #: 14 Alignment: VAGCSCMCSGCVVB CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Reverse Complement Reverse Complement GGGGCCVHKGGSRG GYRYCCMTKGGYRSC GBRBCCVWKGGBRSC Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGGGCCVHKGGSRG- GYRYCCMTKGGYRSC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement GBRBCCVWKGGBRSC MGGTCAGGGTGACCTRDBHV MGGTCAGGGTGACCTRGBVBCCVWKGGBRSC Direction: Forward Position #: 17 Overlap #: 4 Alignment: ----------------GBRBCCVWKGGBRSC MGGTCAGGGTGACCTRDBHV----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Original Motif Reverse Complement MGGTCAGGGTGACCTRGBVBCCVWKGGBRSC BBCGGKGGMGBB MGGTCAGGGTGVCSKDGGVGCCVWKGGBRSC Direction: Forward Position #: 11 Overlap #: 12 Alignment: MGGTCAGGGTGACCTRGBVBCCVWKGGBRSC ----------BBCGGKGGMGBB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss Combined Motif Original Motif Original Motif MGGTCAGGGTGVCSKDGGVGCCVWKGGBRSC SSSCGSSGCSSS MGGTCAGGGTGVCSKDGGVSSSCKSSGCSSS Direction: Forward Position #: 20 Overlap #: 12 Alignment: MGGTCAGGGTGVCSKDGGVGCCVWKGGBRSC -------------------SSSCGSSGCSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement MGGTCAGGGTGVCSKDGGVSSSCKSSGCSSS BAGGYCABHBTGACCKHV MGGTCAGGGTGVCSKDGBMGGBCRBSGYGRCCKHV Direction: Forward Position #: 18 Overlap #: 14 Alignment: MGGTCAGGGTGVCSKDGGVSSSCKSSGCSSS---- -----------------BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Combined Motif Reverse Complement Original Motif VHRGGKCMCSBKGBCCYBCHYSGBCACCCTGACCY HSCACGTGGC VHRGGKCMCSBKGBCCYVSCHCGTSRCCCTGACCY Direction: Forward Position #: 18 Overlap #: 10 Alignment: VHRGGKCMCSBKGBCCYBCHYSGBCACCCTGACCY -----------------HSCACGTGGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement VHRGGKCMCSBKGBCCYVSCHCGTSRCCCTGACCY MSGKKRCGCWDCABTGBBCD VHRGGKCMCSBKGBCCYVSCMSGKKRCVCTGMMBTGBBCD Direction: Forward Position #: 21 Overlap #: 15 Alignment: VHRGGKCMCSBKGBCCYVSCHCGTSRCCCTGACCY----- --------------------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 32 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 ssCGCCsCCrCCCss Original Motif Original Motif CCCCKCCCCC SSCGCCSCCGCCCSS SSCGCCCCCKCCCCC Direction: Forward Position #: 6 Overlap #: 10 Alignment: -----CCCCKCCCCC SSCGCCSCCGCCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Reverse Complement Reverse Complement GGGGGYGGGGGCGSS BBCGGKGGMGBB GVGSGBGGGSGCGSS Direction: Forward Position #: 2 Overlap #: 12 Alignment: GGGGGYGGGGGCGSS -BBCGGKGGMGBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ccCCmCACCcc Combined Motif Original Motif Reverse Complement GVGSGBGGGSGCGSS DDGGTGRGGBD GVGSGGKGGGGVGSS Direction: Forward Position #: 3 Overlap #: 11 Alignment: GVGSGBGGGSGCGSS --DDGGTGRGGBD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Reverse Complement Original Motif SSCVCCCCRCCSCVC CCCCMAAMCAMCCMCMMMCV CCCCMAAMCAMCCMCHVVCCCCRCCSCVC Direction: Forward Position #: 15 Overlap #: 6 Alignment: --------------SSCVCCCCRCCSCVC CCCCMAAMCAMCCMCMMMCV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif GVGSGGKGGGGVVDGRGGRTGRTTYGGGG BBVGCCBVGGCCTV GVGSGGKGGVGSBBVGGSSTGRTTYGGGG Direction: Forward Position #: 8 Overlap #: 14 Alignment: GVGSGGKGGGGVVDGRGGRTGRTTYGGGG -------BBVGCCBVGGCCTV-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Original Motif GVGSGGKGGVGSBBVGGSSTGRTTYGGGG GGGGCCCAAGGGGG GVGSGGKGGGGCCBDRGGGKGRTTYGGGG Direction: Forward Position #: 8 Overlap #: 14 Alignment: GVGSGGKGGVGSBBVGGSSTGRTTYGGGG -------GGGGCCCAAGGGGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif GVGSGGKGGGGCCBDRGGGKGRTTYGGGG BTRGGDCARAGGKCA GVGSGGKGBGGSBCARRGGKSRTTYGGGG Direction: Forward Position #: 8 Overlap #: 15 Alignment: GVGSGGKGGGGCCBDRGGGKGRTTYGGGG -------BTRGGDCARAGGKCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Original Motif Original Motif GVGSGGKGBGGSBCARRGGKSRTTYGGGG DGGGYGKGGC GVGSGGKGBDGGGYRDGGSKSRTTYGGGG Direction: Forward Position #: 10 Overlap #: 10 Alignment: GVGSGGKGBGGSBCARRGGKSRTTYGGGG ---------DGGGYGKGGC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Reverse Complement Reverse Complement CCCCMAAKSRSCCHMKCCCHBCRCCSCVC BBCGCCCSGCVV CCCCMAAKSRSCCHMKCCCCGCMCCGCVC Direction: Forward Position #: 18 Overlap #: 12 Alignment: CCCCMAAKSRSCCHMKCCCHBCRCCSCVC -----------------BBCGCCCSGCVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- rrAGGGGGArr Combined Motif Original Motif Reverse Complement CCCCMAAKSRSCCHMKCCCCGCMCCGCVC VVTCCCCCTVV CCCCMAAKVVTCCCCCYVCCGCMCCGCVC Direction: Forward Position #: 9 Overlap #: 11 Alignment: CCCCMAAKSRSCCHMKCCCCGCMCCGCVC --------VVTCCCCCTVV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 33 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRAVDR Ar Reverse Complement Original Motif TGAACKCBWTGACCC HWDAGHACRHHVTGTHCCHVMV HWDDGAACDCBHTGWCCCHVMV Direction: Backward Position #: 5 Overlap #: 15 Alignment: ---TGAACKCBWTGACCC---- HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement VRVDGGGWCAHBGHGTTCDDWH BAGGYCABHBTGACCKHV VRVBRGGWCABBBTGWYCKHDH Direction: Forward Position #: 4 Overlap #: 18 Alignment: VRVDGGGWCAHBGHGTTCDDWH ---BAGGYCABHBTGACCKHV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 Combined Motif Reverse Complement Original Motif HDHRGKWCABBBTGWCCKBVMV RGKTCABVVRGAGGTCA HDHRGKTCABVDDGASSTCAMV Direction: Forward Position #: 4 Overlap #: 17 Alignment: HDHRGKWCABBBTGWCCKBVMV ---RGKTCABVVRGAGGTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif HDHRGKTCABVDDGASSTCAMV VDBHMAGGTCACCCTGACCY HDHRGKTCABVVDSHVVKGDCACCCTGACCY Direction: Forward Position #: 12 Overlap #: 11 Alignment: HDHRGKTCABVDDGASSTCAMV--------- -----------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Reverse Complement Original Motif MGGTCAGGGTGDCYBVHSDVVBTGAYCKHDH GSMMCCYARGGKKKC GSMVSYCARGGKKDCYBVHSDVVBTGAYCKHDH Direction: Forward Position #: 3 Overlap #: 13 Alignment: --MGGTCAGGGTGDCYBVHSDVVBTGAYCKHDH GSMMCCYARGGKKKC------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif HDHRGKTCABVVDSHVVKGHYRCCMTGKSVYSC AAAGGTCAAAGGTCAAC AAAGGTCAAAGGTCAHSVDSHVVKGHYRCCMTGKSVYSC Direction: Forward Position #: 7 Overlap #: 11 Alignment: ------HDHRGKTCABVVDSHVVKGHYRCCMTGKSVYSC AAAGGTCAAAGGTCAAC---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Reverse Complement GSMVSYCARGGKKDCYBVHSDVSHTGACCTTTGACCTTT CCCCCTTGGGCCCC GSCCCCCWDGGGSCCCBVHSDVSHTGACCTTTGACCTTT Direction: Forward Position #: 3 Overlap #: 14 Alignment: GSMVSYCARGGKKDCYBVHSDVSHTGACCTTTGACCTTT --CCCCCTTGGGCCCC----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement GSCCCCCWDGGGSCCCBVHSDVSHTGACCTTTGACCTTT TGRCCTKTGHCCKAB GSCCCCCWDGGGSCCCBVHSDVSHTGACCTTTGACCKDB Direction: Forward Position #: 25 Overlap #: 15 Alignment: GSCCCCCWDGGGSCCCBVHSDVSHTGACCTTTGACCTTT ------------------------TGRCCTKTGHCCKAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Original Motif GSCCCCCWDGGGSCCCBVHSDVSHTGACCTTTGACCKDB RGGBCAAAGKYCA GSCCCCCWDGGGSCVSBBYMAAGKTSACCTTTGACCKDB Direction: Forward Position #: 15 Overlap #: 13 Alignment: GSCCCCCWDGGGSCCCBVHSDVSHTGACCTTTGACCKDB --------------RGGBCAAAGKYCA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Reverse Complement GSCCCCCWDGGGSCVSBBYMAAGKTSACCTTTGACCKDB AKGYYCAAAGRTCA GSCCCCCWDGGGSVVGBBCAAAGDTCACCTTTGACCKDB Direction: Forward Position #: 14 Overlap #: 14 Alignment: GSCCCCCWDGGGSCVSBBYMAAGKTSACCTTTGACCKDB -------------AKGYYCAAAGRTCA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 34 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 ESR1 Reverse Complement Reverse Complement BGRRRGRGGRTGRTTYGGGG MGGTCAGGGTGACCTRDBHV BVGGDSAGGGTGRYYTGGGVV Direction: Backward Position #: 2 Overlap #: 19 Alignment: BGRRRGRGGRTGRTTYGGGG- -MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Reverse Complement BVGGDSAGGGTGRYYTGGGVV VRVDGGHACAVDDKGTHCTDWH BVGGDVDGGDWSABBTKGKDCTDWH Direction: Forward Position #: 4 Overlap #: 18 Alignment: BVGGDSAGGGTGRYYTGGGVV---- ---VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif BVGGDVDGGDWSABBTKGKDCTDWH VHRGGTCABDBTGMCCTB BVGGDVDRGGTCABBBKGHHCTDWH Direction: Forward Position #: 6 Overlap #: 18 Alignment: BVGGDVDGGDWSABBTKGKDCTDWH -----VHRGGTCABDBTGMCCTB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement BVGGDVDRGGTCABBBKGHHCTDWH MSGKKRCGCWDCABTGBBCD BVGGDVDRGGTCASGKKRHVCTDHHBTGBBCD Direction: Forward Position #: 13 Overlap #: 13 Alignment: BVGGDVDRGGTCABBBKGHHCTDWH------- ------------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Reverse Complement BVGGDVDRGGTCASGKKRHVCTDHHBTGBBCD SSGGGCGGSGGCGSS BVGGDVDRGGTCASGKKRHVCKGGHGDGGBCGSS Direction: Forward Position #: 20 Overlap #: 13 Alignment: BVGGDVDRGGTCASGKKRHVCTDHHBTGBBCD-- -------------------SSGGGCGGSGGCGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Reverse Complement SSCGBCCHCDCCYGVDMRRCSTGACCMDVHCCVB CCCCCTTGGGCCCC CCCCCYHGSSCCCCCCYGVDMRRCSTGACCMDVHCCVB Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----SSCGBCCHCDCCYGVDMRRCSTGACCMDVHCCVB CCCCCTTGGGCCCC------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Reverse Complement Reverse Complement BVGGDVDRGGTCASGKKRHVCKGGGGGGSSCHKGGGGG TGTGTGKVTGTGTG TGTGKGKVWGKGTSASGKKRHVCKGGGGGGSSCHKGGGGG Direction: Forward Position #: 3 Overlap #: 12 Alignment: --BVGGDVDRGGTCASGKKRHVCKGGGGGGSSCHKGGGGG TGTGTGKVTGTGTG-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yayAyAyACATrya Combined Motif Reverse Complement Original Motif CCCCCYHGSSCCCCCCYGVDMRRCSTSACRCWVRCRCACA HACAYAYACATRHD CCCCCYHGSSCCCVCMYRYACATVBHSACRCWVRCRCACA Direction: Forward Position #: 13 Overlap #: 14 Alignment: CCCCCYHGSSCCCCCCYGVDMRRCSTSACRCWVRCRCACA ------------HACAYAYACATRHD-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Reverse Complement Reverse Complement TGTGKGKVWGKGTSHBBATGTKKKYGBGGGSSCHKGGGGG TGTGTGTGTGTKTG TGTGKGKVWGKGTGTGTGTGTGKKTGBGGGSSCHKGGGGG Direction: Forward Position #: 13 Overlap #: 14 Alignment: TGTGKGKVWGKGTSHBBATGTKKKYGBGGGSSCHKGGGGG ------------TGTGTGTGTGTKTG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Reverse Complement Reverse Complement CCCCCYHGSSCCCVCAYRCACACACACACRCWVRCRCACA TGACCTCKVVBTGAYCK TGACCYCBBHDKGMCCDCAYRCACACACACACRCWVRCRCACA Direction: Forward Position #: 4 Overlap #: 14 Alignment: ---CCCCCYHGSSCCCVCAYRCACACACACACRCWVRCRCACA TGACCTCKVVBTGAYCK-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 35 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Ar Reverse Complement Reverse Complement GGYGCTGTCCATGGTGCTGAA VRVDGGHACAVDDKGTHCTDWH VGVHGSTRYMCDDKGTBCTKAH Direction: Backward Position #: 1 Overlap #: 21 Alignment: -GGYGCTGTCCATGGTGCTGAA VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif VGVHGSTRYMCDDKGTBCTKAH DGVBCABTGDWGCGKRRCSR VGVHGSTRYMCDDDGYDCTGADGCGKRRCSR Direction: Forward Position #: 12 Overlap #: 11 Alignment: VGVHGSTRYMCDDKGTBCTKAH--------- -----------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif MSGKKRCGCDTCAGDMCHHDGRKKASCDVCV VDBHMAGGTCACCCTGACCY MSGKKRCGCDTCAGDMCVHBVVDGRBCAVCCTGACCY Direction: Forward Position #: 18 Overlap #: 14 Alignment: MSGKKRCGCDTCAGDMCHHDGRKKASCDVCV------ -----------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement MGGTCAGGVTGBMCHVVBDVGYDCTGADGCGKRYCSR BAGGYCABHBTGACCKHV MGGTCAGGVTGBMCHVVBHGGYVMYBVTGMSYDHCSR Direction: Forward Position #: 18 Overlap #: 18 Alignment: MGGTCAGGVTGBMCHVVBDVGYDCTGADGCGKRYCSR -----------------BAGGYCABHBTGACCKHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Original Motif MGGTCAGGVTGBMCHVVBHGGYVMYBVTGMSYDHCSR RGGBCAAAGKYCA MGGTCAGGVTGBMCHVVBHGGYVVKDBYRARGKYCVR Direction: Forward Position #: 24 Overlap #: 13 Alignment: MGGTCAGGVTGBMCHVVBHGGYVMYBVTGMSYDHCSR -----------------------RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement MGGTCAGGVTGBMCHVVBHGGYVVKDBYRARGKYCVR TGRCCTKTGHCCKAB MGGTCAGGVTGBMCHVVBHGGYVHGVCCKDDGBCCDRB Direction: Forward Position #: 24 Overlap #: 14 Alignment: MGGTCAGGVTGBMCHVVBHGGYVVKDBYRARGKYCVR- -----------------------TGRCCTKTGHCCKAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Reverse Complement Original Motif BKHGGBCDDRGGVCHVMCCHBVVDGRBCAVCCTGACCY SSCGCCSCCGCCCSS BKHGGBCDDRGGVCHVMCCHBVVDBVCSVCCCYGMCCBS Direction: Forward Position #: 25 Overlap #: 14 Alignment: BKHGGBCDDRGGVCHVMCCHBVVDGRBCAVCCTGACCY- ------------------------SSCGCCSCCGCCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGCTswGCCms Combined Motif Reverse Complement Original Motif SBGGRCKGGGVSGVBHVVBHGGYVHGVCCKDDGBCCDRB VBGCTSAGCCHB SBGGRCKGGGVSGVBHVVBHGGYVHBVGCTVWGCCHBRB Direction: Forward Position #: 26 Overlap #: 12 Alignment: SBGGRCKGGGVSGVBHVVBHGGYVHGVCCKDDGBCCDRB -------------------------VBGCTSAGCCHB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Original Motif Reverse Complement SBGGRCKGGGVSGVBHVVBHGGYVHBVGCTVWGCCHBRB BBCGGKGGMGBB SBGGRCKGGGVSGVBHVVBHGGYVHBVCSKBDGCSBBRB Direction: Forward Position #: 26 Overlap #: 12 Alignment: SBGGRCKGGGVSGVBHVVBHGGYVHBVGCTVWGCCHBRB -------------------------BBCGGKGGMGBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Reverse Complement SBGGRCKGGGVSGVBHVVBHGGYVHBVCSKBDGCSBBRB CKGGDTBDMMCTGG SBGGRCKGGGVSGVBHVVBHGGYVCBGSBKBDRMCBGGB Direction: Forward Position #: 25 Overlap #: 14 Alignment: SBGGRCKGGGVSGVBHVVBHGGYVHBVCSKBDGCSBBRB ------------------------CKGGDTBDMMCTGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 36 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA NR1H2RXRA Original Motif Original Motif BTRGGDCARAGGKCA AAAGGTCAAAGGTCAAC VDRGGTCAAAGGTCAAC Direction: Backward Position #: 3 Overlap #: 15 Alignment: BTRGGDCARAGGKCA-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Original Motif Original Motif VDRGGTCAAAGGTCAAC RGKTCABVVRGAGGTCA RGDTVRGBSARAGGTCAAC Direction: Forward Position #: 3 Overlap #: 15 Alignment: --VDRGGTCAAAGGTCAAC RGKTCABVVRGAGGTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Original Motif GTTGACCTKTSVCKVAHCK VHRGGTCABDBTGMCCTB GTTDASSTCWBVBTGACCTB Direction: Forward Position #: 3 Overlap #: 17 Alignment: GTTGACCTKTSVCKVAHCK- --VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Reverse Complement GTTDASSTCWBVBTGACCTB VRVDGGHACAVDDKGTHCTDWH GTTDASSTCDVVBKGWMCHVDDKGTHCTDWH Direction: Forward Position #: 10 Overlap #: 11 Alignment: GTTDASSTCWBVBTGACCTB----------- ---------VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement HWDAGHACRHHVHGYWCYBVVDGASSTHAAC MSGKKRCGCWDCABTGBBCD HWDAGHACRHHVHGYWCBGBBDVRCBTCAVYGBBCD Direction: Forward Position #: 17 Overlap #: 15 Alignment: HWDAGHACRHHVHGYWCYBVVDGASSTHAAC----- ----------------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif HWDAGHACRHHVHGYWCBGBBDVRCBTCAVYGBBCD VDBHMAGGTCACCCTGACCY HWDAGHACRHHVHGYWCBGBBDBVCDKSHVHBYBYGACCY Direction: Forward Position #: 21 Overlap #: 16 Alignment: HWDAGHACRHHVHGYWCBGBBDVRCBTCAVYGBBCD---- --------------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Original Motif HWDAGHACRHHVHGYWCBGBBDBVCDKSHVHBYBYGACCY CCCCMAAMCAMCCMCMMMCV CCHCARAMCAMCCHSHHMCVBBDBVCDKSHVHBYBYGACCY Direction: Forward Position #: 2 Overlap #: 19 Alignment: -HWDAGHACRHHVHGYWCBGBBDBVCDKSHVHBYBYGACCY CCCCMAAMCAMCCMCMMMCV--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Reverse Complement MGGTCMBKBHVHSYDGBBHBBVGRHDSHGGRTGYTMTGDGG GGYGCTGTCCATGGTGCTGAA MGGTCMBKBHVHSYDGBGVHBCKGTCCHDGGTGCTVHRDGG Direction: Forward Position #: 18 Overlap #: 21 Alignment: MGGTCMBKBHVHSYDGBBHBBVGRHDSHGGRTGYTMTGDGG -----------------GGYGCTGTCCATGGTGCTGAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Original Motif MGGTCMBKBHVHSYDGBGVHBCKGTCCHDGGTGCTVHRDGG TGAMCTTTGMMCYT MGGTCMBKBTGAMCTKTGVHCCTGTCCHDGGTGCTVHRDGG Direction: Forward Position #: 10 Overlap #: 14 Alignment: MGGTCMBKBHVHSYDGBGVHBCKGTCCHDGGTGCTVHRDGG ---------TGAMCTTTGMMCYT------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Reverse Complement CCHMHVAGCACCHHGGACAGGDBCARAGRTCABYBYGACCY CCCCCTTGGGCCCC CCCCHBWGSRCCCCGGACAGGDBCARAGRTCABYBYGACCY Direction: Forward Position #: 1 Overlap #: 14 Alignment: CCHMHVAGCACCHHGGACAGGDBCARAGRTCABYBYGACCY CCCCCTTGGGCCCC--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 37 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Zfp423 Original Motif Original Motif GGGGCCCAAGGGGG GSMMCCYARGGKKKC GGSVCCYARGGGGGC Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGGGCCCAAGGGGG- GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Original Motif GCCCCCKTKGGVSCC CCCCMAAMCAMCCMCMMMCV GCCCCMHWVSRMCCCCMMMCV Direction: Forward Position #: 2 Overlap #: 14 Alignment: GCCCCCKTKGGVSCC------ -CCCCMAAMCAMCCMCMMMCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Reverse Complement Reverse Complement BGRRRGGGGRKSVWHRGGGGC SSGGGCGGSGGCGSS BGRVDGGGVGKSGBHGGGGGC Direction: Forward Position #: 4 Overlap #: 15 Alignment: BGRRRGGGGRKSVWHRGGGGC ---SSGGGCGGSGGCGSS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif BGRVDGGGVGKSGBHGGGGGC BTRGGDCARAGGKCA BGRVDGGGVSRVRGBKSRGGC Direction: Forward Position #: 4 Overlap #: 15 Alignment: BGRVDGGGVGKSGBHGGGGGC ---BTRGGDCARAGGKCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif GCCKSYBCKVKSVCCCDVMCB BBVGCCBVGGCCTV GCCBSBBCYVDGGCCYVVMCB Direction: Forward Position #: 4 Overlap #: 14 Alignment: GCCKSYBCKVKSVCCCDVMCB ---BBVGCCBVGGCCTV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Original Motif GCCBSBBCYVDGGCCYVVMCB CCAGYYHVADCCRG GCCCCVGYYBDRDCCDGVMCB Direction: Forward Position #: 4 Overlap #: 14 Alignment: GCCBSBBCYVDGGCCYVVMCB ---CCAGYYHVADCCRG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Original Motif Reverse Complement GCCCCVGYYBDRDCCDGVMCB TGACCTCKVVBTGAYCK TGACCTCKVVBTGRCCBCVGYYBDRDCCDGVMCB Direction: Forward Position #: 14 Overlap #: 4 Alignment: -------------GCCCCVGYYBDRDCCDGVMCB TGACCTCKVVBTGAYCK----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement TGACCTCKVVBTGRCCBCVGYYBDRDCCDGVMCB MSGKKRCGCWDCABTGBBCD TGACCTCKVVBTGRCCBCVVVBBDRVSCWDCMSBGBBCD Direction: Forward Position #: 20 Overlap #: 15 Alignment: TGACCTCKVVBTGRCCBCVGYYBDRDCCDGVMCB----- -------------------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRAVDR Reverse Complement Original Motif HGVBCVSYGHWGSVKDBBVVBGBGGKCABVVRGAGGTCA GGGTCAWBGRGTTCA GGGTCRHBVRGTKCAGSVKDBBVVBGBGGKCABVVRGAGGTCA Direction: Forward Position #: 5 Overlap #: 11 Alignment: ----HGVBCVSYGHWGSVKDBBVVBGBGGKCABVVRGAGGTCA GGGTCAWBGRGTTCA---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Reverse Complement TGACCTCKVVBTGRCCBCVVVBBDRVSCTGRACKVBHKGACCC TGMYCTTTGBCCK TGACCTCKVVBTGRCCBSVBCKTTGBCCKGRACKVBHKGACCC Direction: Forward Position #: 17 Overlap #: 13 Alignment: TGACCTCKVVBTGRCCBCVVVBBDRVSCTGRACKVBHKGACCC ----------------TGMYCTTTGBCCK-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 38 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 NR1H2RXRA Original Motif Reverse Complement TGAMCTTTGMMCYT GTTGACCTTTGACCTTT GTTGACCTTTGACCTTT Direction: Backward Position #: 2 Overlap #: 14 Alignment: --TGAMCTTTGMMCYT- GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Original Motif AAAGGTCAAAGGTCAAC BTRGGDCARAGGKCA VDRGGKCAAAGGTCAAC Direction: Forward Position #: 1 Overlap #: 15 Alignment: AAAGGTCAAAGGTCAAC BTRGGDCARAGGKCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Original Motif Original Motif VDRGGKCAAAGGTCAAC RGKTCABVVRGAGGTCA RGDTVRDBSARAGGTCAAC Direction: Forward Position #: 3 Overlap #: 15 Alignment: --VDRGGKCAAAGGTCAAC RGKTCABVVRGAGGTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Reverse Complement Original Motif GTTGACCTKTSBHKVAHCK DHAYAYAYRTGTGTRTDH VTWBACMTDTGTVTRWVCK Direction: Forward Position #: 1 Overlap #: 18 Alignment: GTTGACCTKTSBHKVAHCK DHAYAYAYRTGTGTRTDH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif VTWBACMTDTGTVTRWVCK VHRGGTCABDBTGMCCTB VTHDABVTCWVBVTGHHCTB Direction: Forward Position #: 3 Overlap #: 17 Alignment: VTWBACMTDTGTVTRWVCK- --VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif VTHDABVTCWVBVTGHHCTB TTCAGCACCATGGACAGCKCC TTCAGCACCDTGGACAKCDSBVTGHHCTB Direction: Forward Position #: 10 Overlap #: 12 Alignment: ---------VTHDABVTCWVBVTGHHCTB TTCAGCACCATGGACAGCKCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement BAGDHCAVBSDGYTGTCCADGGTGCTGAA MSGKKRCGCWDCABTGBBCD BAGDHCAVBSDGYTGTCSRDGGYGCTKMABTGBBCD Direction: Forward Position #: 17 Overlap #: 13 Alignment: BAGDHCAVBSDGYTGTCCADGGTGCTGAA------- ----------------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Reverse Complement HGVBCABTRYAGCMCCDMSGACAKCDSBVTGHHCTB TGMYCTTTGBCCK HGVBCABTRYAGCMCCDMSGACDGMHCTKTGHCCKB Direction: Forward Position #: 23 Overlap #: 13 Alignment: HGVBCABTRYAGCMCCDMSGACAKCDSBVTGHHCTB ----------------------TGMYCTTTGBCCK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif HGVBCABTRYAGCMCCDMSGACDGMHCTKTGHCCKB BBVGCCBVGGCCTV HGVBCABTRYAGCMCCDMSGACVBVDCYBHGGCCTV Direction: Forward Position #: 23 Overlap #: 14 Alignment: HGVBCABTRYAGCMCCDMSGACDGMHCTKTGHCCKB ----------------------BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif HGVBCABTRYAGCMCCDMSGACVBVDCYBHGGCCTV VDBHMAGGTCACCCTGACCY HGVBCABTRYAGCMCCDMSGAVDBVVVBGTSRCCBTGACCY Direction: Forward Position #: 22 Overlap #: 15 Alignment: HGVBCABTRYAGCMCCDMSGACVBVDCYBHGGCCTV----- ---------------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 39 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MZF1_1-4 rrAGGGGGArr Reverse Complement Reverse Complement TCCCCV VVTCCCCCTVV VVTCCCCCTVV Direction: Forward Position #: 3 Overlap #: 6 Alignment: --TCCCCV--- VVTCCCCCTVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Reverse Complement VVTCCCCCTVV MGCCCCCTGMCA MVYCCCCHKMCA Direction: Forward Position #: 1 Overlap #: 11 Alignment: VVTCCCCCTVV- MGCCCCCTGMCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MZF1_5-13 Original Motif Reverse Complement MVYCCCCHKMCA BTHCCCCTYB HDYCCCCTBVCA Direction: Forward Position #: 1 Overlap #: 10 Alignment: MVYCCCCHKMCA BTHCCCCTYB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Reverse Complement Reverse Complement TGVVAGGGGMDH DDGGTGRGGBD KGGGWGGGGVDH Direction: Forward Position #: 1 Overlap #: 11 Alignment: TGVVAGGGGMDH DDGGTGRGGBD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Original Motif KGGGWGGGGVDH DGGGYGKGGC DGGGYGGGGHDH Direction: Forward Position #: 1 Overlap #: 10 Alignment: KGGGWGGGGVDH DGGGYGKGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Reverse Complement HHDCCCCMCCCD CCCCCTTGGGCCCC CCCCCBWGSSCCMCCCD Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----HHDCCCCMCCCD CCCCCTTGGGCCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 24 Original Motif Reverse Complement CCCCCBWGSSCCMCCCD TCCCAG YCCCMGWGSSCCMCCCD Direction: Forward Position #: 1 Overlap #: 6 Alignment: CCCCCBWGSSCCMCCCD TCCCAG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Original Motif Original Motif YCCCMGWGSSCCMCCCD CCCCKCCCCC YCCCCCHDCCCCCCCCD Direction: Forward Position #: 4 Overlap #: 10 Alignment: YCCCMGWGSSCCMCCCD ---CCCCKCCCCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Original Motif YCCCCCHDCCCCCCCCD SSCGCCSCCGCCCSS YCCCVCCSCCBCCCCCD Direction: Forward Position #: 2 Overlap #: 15 Alignment: YCCCCCHDCCCCCCCCD -SSCGCCSCCGCCCSS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Reverse Complement Reverse Complement DGGGGGBGGSGGVGGGM BGRRRGRGGRTGRTTYGGGG BGRRRGRGGRTGRTTTGGGGGBGGSGGVGGGM Direction: Forward Position #: 16 Overlap #: 5 Alignment: ---------------DGGGGGBGGSGGVGGGM BGRRRGRGGRTGRTTYGGGG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 40 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar REST Reverse Complement Reverse Complement VRVDGGHACAVDDKGTHCTDWH GGYGCTGTCCATGGTGCTGAA VGVHGSTRYMCDDKGTBCTKAH Direction: Backward Position #: 1 Overlap #: 21 Alignment: VRVDGGHACAVDDKGTHCTDWH -GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif VGVHGSTRYMCDDKGTBCTKAH DGVBCABTGDWGCGKRRCSR VGVHGSTRYMCDDDGYDCTGADGCGKRRCSR Direction: Forward Position #: 12 Overlap #: 11 Alignment: VGVHGSTRYMCDDKGTBCTKAH--------- -----------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif MSGKKRCGCDTCAGDMCHHDGRKKASCDVCV VDBHMAGGTCACCCTGACCY MSGKKRCGCDTCAGDMCVHBVVDGRBCAVCCTGACCY Direction: Forward Position #: 18 Overlap #: 14 Alignment: MSGKKRCGCDTCAGDMCHHDGRKKASCDVCV------ -----------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Reverse Complement Original Motif MGGTCAGGVTGBMCHVVBDVGYDCTGADGCGKRYCSR CCCCMAAMCAMCCMCMMMCV CCCCMRRYCAVSVHSHMCVVVBDVGYDCTGADGCGKRYCSR Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----MGGTCAGGVTGBMCHVVBDVGYDCTGADGCGKRYCSR CCCCMAAMCAMCCMCMMMCV--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Combined Motif Original Motif Reverse Complement CCCCMRRYCAVSVHSHMCVVVBDVGYDCTGADGCGKRYCSR HDAMACACAKKTKTKTHD CCCCMRRYCAVSVHSHHMMACAVVKKTBTKDHGCGKRYCSR Direction: Forward Position #: 16 Overlap #: 18 Alignment: CCCCMRRYCAVSVHSHMCVVVBDVGYDCTGADGCGKRYCSR ---------------HDAMACACAKKTKTKTHD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif CCCCMRRYCAVSVHSHHMMACAVVKKTBTKDHGCGKRYCSR BTRGGDCARAGGKCA CCCCMRRYCAVSVHSHHMMACAVVKKTBTRKRGCRDABSBVA Direction: Forward Position #: 28 Overlap #: 14 Alignment: CCCCMRRYCAVSVHSHHMMACAVVKKTBTKDHGCGKRYCSR- ---------------------------BTRGGDCARAGGKCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yayAyAyACATrya Combined Motif Original Motif Original Motif CCCCMRRYCAVSVHSHHMMACAVVKKTBTRKRGCRDABSBVA HACAYAYACATRHD CCCCMRRYCAHVCAYAYACAYRHVKKTBTRKRGCRDABSBVA Direction: Forward Position #: 11 Overlap #: 14 Alignment: CCCCMRRYCAVSVHSHHMMACAVVKKTBTRKRGCRDABSBVA ----------HACAYAYACATRHD------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif CCCCMRRYCAHVCAYAYACAYRHVKKTBTRKRGCRDABSBVA VHRGGTCABDBTGMCCTB CCCCMRRYCAHVCAYAYACAYRHVKKTBBDRGGYMAVBBTGACCTB Direction: Forward Position #: 29 Overlap #: 14 Alignment: CCCCMRRYCAHVCAYAYACAYRHVKKTBTRKRGCRDABSBVA---- ----------------------------VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCwGGCCwGCss Combined Motif Reverse Complement Reverse Complement BAGGTCABBBTRMCCMDVBARYBDKMTGTKTKTGBDTGKMKYGGGG BBGCTGGCCWGBB BAGGTCABBBDVVCHGGCCAGBBDKMTGTKTKTGBDTGKMKYGGGG Direction: Forward Position #: 11 Overlap #: 13 Alignment: BAGGTCABBBTRMCCMDVBARYBDKMTGTKTKTGBDTGKMKYGGGG ----------BBGCTGGCCWGBB----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Original Motif CCCCMRRYCAHVCAYAYACAYRHVBCTGGCCHGVVDVBBTGACCTB RGGBCAAAGKYCA CCCCMRRYCAHVCAYAYACAYRHVBCTGRSVHSAAAGKBYRACCTB Direction: Forward Position #: 29 Overlap #: 13 Alignment: CCCCMRRYCAHVCAYAYACAYRHVBCTGGCCHGVVDVBBTGACCTB ----------------------------RGGBCAAAGKYCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 41 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Arnt Esrrb Original Motif Original Motif CACGTG CACGTG CACGTG Direction: Forward Position #: 1 Overlap #: 6 Alignment: CACGTG CACGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MYCMAX Reverse Complement Reverse Complement CACGTG ACCACGTGSTM ACCACGTGSTM Direction: Forward Position #: 3 Overlap #: 6 Alignment: --CACGTG--- ACCACGTGSTM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement ACCACGTGSTM DCCACGTGCV DCCACGTGSDM Direction: Forward Position #: 1 Overlap #: 10 Alignment: ACCACGTGSTM DCCACGTGCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement DCCACGTGSDM GCCACGTGSD DCCACGTGSDM Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCACGTGSDM GCCACGTGSD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HIF1AARNT Reverse Complement Original Motif RHSCACGTGGH VBACGTGV VBRCRYGYGGH Direction: Forward Position #: 1 Overlap #: 8 Alignment: RHSCACGTGGH VBACGTGV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ArntAhr Reverse Complement Reverse Complement DCCMCMMGKBV CACGCM CMCGCMMGKBV Direction: Forward Position #: 1 Overlap #: 6 Alignment: DCCMCMMGKBV CACGCM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ZEB1 Combined Motif Reverse Complement Reverse Complement VBRCRYGCGYG HAGGTG VHASGTGCGYG Direction: Forward Position #: 2 Overlap #: 6 Alignment: VBRCRYGCGYG -HAGGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Original Motif VHASGTGCGYG HGCGTGGGCGK HGCRBGKGCGBG Direction: Forward Position #: 2 Overlap #: 10 Alignment: -VHASGTGCGYG HGCGTGGGCGK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Original Motif Original Motif HGCRBGKGCGBG DHAYAYAYRTGTGTRTDH DHRYRYRBGYGTGTRTDH Direction: Forward Position #: 2 Overlap #: 12 Alignment: -HGCRBGKGCGBG----- DHAYAYAYRTGTGTRTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Reverse Complement Original Motif HDAMACACKCVKKKKKHD BAACGTCCGC HDACRYMCGCVKKKKKHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HDAMACACKCVKKKKKHD BAACGTCCGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 42 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ArntAhr Egr1 Reverse Complement Reverse Complement CACGCM YCGCCCACGCH YCGCCCACGCM Direction: Backward Position #: 1 Overlap #: 6 Alignment: -----CACGCM YCGCCCACGCH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HIF1AARNT Reverse Complement Original Motif YGCGTGGGCGK VBACGTGV VBRCGTGGGCGK Direction: Forward Position #: 2 Overlap #: 7 Alignment: -YGCGTGGGCGK VBACGTGV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Reverse Complement VBRCGTGGGCGK TGTGTGTGTGTKTG TGTGYGTGKGYGTG Direction: Forward Position #: 2 Overlap #: 12 Alignment: -VBRCGTGGGCGK- TGTGTGTGTGTKTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Reverse Complement Reverse Complement CACMCRCACMCACA CACGTG CACGYRCACMCACA Direction: Forward Position #: 1 Overlap #: 6 Alignment: CACMCRCACMCACA CACGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Arnt Original Motif Reverse Complement CACGYRCACMCACA CACGTG CACGTGCACMCACA Direction: Forward Position #: 1 Overlap #: 6 Alignment: CACGYRCACMCACA CACGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Original Motif CACGTGCACMCACA CACACACACACA CACRYRCACACACA Direction: Forward Position #: 1 Overlap #: 12 Alignment: CACGTGCACMCACA CACACACACACA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Reverse Complement Reverse Complement TGTGTGTGKKKGTG TGTGTGKVTGTGTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGTGTGTGKKKGTG TGTGTGKVTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Original Motif CACACACACACACA HVCATGCATGCABD CACAYRCAYRCACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACACACACACA HVCATGCATGCABD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Original Motif CACAYRCAYRCACA CACACACACACA CACAYACACACACA Direction: Forward Position #: 1 Overlap #: 12 Alignment: CACAYRCAYRCACA CACACACACACA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MYCMAX Reverse Complement Original Motif TGTGTGTGTKTGTG RASCACGTGGT RASCAYGTGKKTGTKTGTG Direction: Forward Position #: 6 Overlap #: 6 Alignment: -----TGTGTGTGTKTGTG RASCACGTGGT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 43 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- E2F1 PLAG1 Original Motif Reverse Complement TTTSGCGC CCCCCTTGGGCCCC CYYYSKYGSGCCCC Direction: Forward Position #: 2 Overlap #: 8 Alignment: -TTTSGCGC----- CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Original Motif GGGGCSCKYSKKMG BTRGGDCARAGGKCA BGRGGSSMRVGGKMR Direction: Forward Position #: 2 Overlap #: 14 Alignment: -GGGGCSCKYSKKMG BTRGGDCARAGGKCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Reverse Complement Reverse Complement MRRCCBMYSSCCMCB TGMYCTTTGBCCK HGRYCTHTGBCCBCB Direction: Forward Position #: 1 Overlap #: 13 Alignment: MRRCCBMYSSCCMCB TGMYCTTTGBCCK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif BGBGGBCAHAGKKCH AAAGGTCAAAGGTCAAC VRRGGTCAAAGGTCAAC Direction: Forward Position #: 1 Overlap #: 15 Alignment: BGBGGBCAHAGKKCH-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif GTTGACCTTTGACCKMB TGAMCTTTGMMCYT TGAMCKTTGACCTTTGACCKMB Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----GTTGACCTTTGACCKMB TGAMCTTTGMMCYT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Reverse Complement Original Motif VRRGGTCAAAGGTCAARGRTCA GSMMCCYARGGKKKC GSMMCCHARGGKBVMAGGTCAARGRTCA Direction: Forward Position #: 7 Overlap #: 9 Alignment: ------VRRGGTCAAAGGTCAARGRTCA GSMMCCYARGGKKKC------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Reverse Complement Reverse Complement TGAMCKTTGACCTYBBRCCKTDGGYRSC VHGARAYAGAVV VHGARAYWGAMCKTTGACCTYBBRCCKTDGGYRSC Direction: Forward Position #: 8 Overlap #: 5 Alignment: -------TGAMCKTTGACCTYBBRCCKTDGGYRSC VHGARAYAGAVV----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss Combined Motif Original Motif Original Motif VHGARAYWGAMCKTTGACCTYBBRCCKTDGGYRSC SSSCGSSGCSSS VHGARAYWGAMCKTTGVVCCGBSGCCBBDGGYRSC Direction: Forward Position #: 17 Overlap #: 12 Alignment: VHGARAYWGAMCKTTGACCTYBBRCCKTDGGYRSC ----------------SSSCGSSGCSSS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Reverse Complement Original Motif GSMMCCHVBGGCSBCGGVBCAARGRTCWKTKTCHB VVGCSGGGCGBB GSMMCCHVBGGCSGVGSGBCAARGRTCWKTKTCHB Direction: Forward Position #: 9 Overlap #: 12 Alignment: GSMMCCHVBGGCSBCGGVBCAARGRTCWKTKTCHB --------VVGCSGGGCGBB--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Reverse Complement Original Motif VHGARAYWGAMCKTTGBCSCVCSGCCBBDGGYRSC AAACAAAACAA AAACRAAACWRAMCKTTGBCSCVCSGCCBBDGGYRSC Direction: Forward Position #: 3 Overlap #: 9 Alignment: --VHGARAYWGAMCKTTGBCSCVCSGCCBBDGGYRSC AAACAAAACAA-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 44 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 ssCrCYyYCGss Original Motif Reverse Complement HGCGTGGGCGK BBCGGKGGMGBB BGCGKGGGCGKB Direction: Forward Position #: 1 Overlap #: 11 Alignment: HGCGTGGGCGK- BBCGGKGGMGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Reverse Complement Original Motif BYCGCCCRCGCV SSCGCCSCCGCCCSS SSCGCCSCCGCCCVCCCRCGCV Direction: Forward Position #: 11 Overlap #: 5 Alignment: ----------BYCGCCCRCGCV SSCGCCSCCGCCCSS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Reverse Complement BGCGKGGGVGGGCGGSGGCGSS BGRRRGRGGRTGRTTYGGGG BGCGKGGGVGBGVGGGGGSGTGRTTYGGGG Direction: Forward Position #: 11 Overlap #: 12 Alignment: BGCGKGGGVGGGCGGSGGCGSS-------- ----------BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACACACACACA Combined Motif Reverse Complement Original Motif CCCCMAAMCACSCCCCCBCBCVCCCRCGCV CACACACACACA CCCCMAMMCACACMCACDCBCVCCCRCGCV Direction: Forward Position #: 7 Overlap #: 12 Alignment: CCCCMAAMCACSCCCCCBCBCVCCCRCGCV ------CACACACACACA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACACACACACA Combined Motif Original Motif Original Motif CCCCMAMMCACACMCACDCBCVCCCRCGCV CACACACACACA CCCCMACACACACACACACBCVCCCRCGCV Direction: Forward Position #: 7 Overlap #: 12 Alignment: CCCCMAMMCACACMCACDCBCVCCCRCGCV ------CACACACACACA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Reverse Complement Reverse Complement BGCGKGGGVGBGTGTGTGTGTGTGTYGGGG TGTGTGTGTGTKTG BGCGKGGGTGTGTGTGTGTGTGTGTYGGGG Direction: Forward Position #: 9 Overlap #: 14 Alignment: BGCGKGGGVGBGTGTGTGTGTGTGTYGGGG --------TGTGTGTGTGTKTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ccCCmCACCcc Combined Motif Reverse Complement Original Motif CCCCMACACACACACACACACACCCRCGCV HBCCMCACCHH CCCCMACHCMCMCACMCHCACACCCRCGCV Direction: Forward Position #: 8 Overlap #: 11 Alignment: CCCCMACACACACACACACACACCCRCGCV -------HBCCMCACCHH------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Reverse Complement Original Motif BGCGKGGGTGTGHGRGTGYGRGHGTYGGGG VVGCSGGGCGBB BGCGKGGGBGGSBGRGYGBGRGHGTYGGGG Direction: Forward Position #: 9 Overlap #: 12 Alignment: BGCGKGGGTGTGHGRGTGYGRGHGTYGGGG --------VVGCSGGGCGBB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 25 Combined Motif Original Motif Reverse Complement BGCGKGGGBGGSBGRGYGBGRGHGTYGGGG TGTGTGKVTGTGTG BGCGKGKGTGKGKGKGTGTGRGHGTYGGGG Direction: Forward Position #: 7 Overlap #: 14 Alignment: BGCGKGGGBGGSBGRGYGBGRGHGTYGGGG ------TGTGTGKVTGTGTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Original Motif Reverse Complement BGCGKGKGTGKGKGKGTGTGRGHGTYGGGG GYRYCCMTKGGYRSC GYRYSCVTKGGYGBSKGKGTGTGRGHGTYGGGG Direction: Forward Position #: 4 Overlap #: 12 Alignment: ---BGCGKGKGTGKGKGKGTGTGRGHGTYGGGG GYRYCCMTKGGYRSC------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 45 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Pax5 Reverse Complement Reverse Complement MGGTCAGGGTGACCTRDBHV MSGKKRCGCWDCABTGBBCD MGGTBAVGCTKVMCTGBBMD Direction: Backward Position #: 1 Overlap #: 20 Alignment: MGGTCAGGGTGACCTRDBHV MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Reverse Complement MGGTBAVGCTKVMCTGBBMD VRVDGGHACAVDDKGTHCTDWH MGGTBAVGSDBVVSTRCHVDDKGTHCTDWH Direction: Forward Position #: 9 Overlap #: 12 Alignment: MGGTBAVGCTKVMCTGBBMD---------- --------VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Reverse Complement Original Motif HWDAGHACRHHVHGKASVBBDSCVTBACCY CCCCMAAMCAMCCMCMMMCV CCHCARAMCAMCVHSHMCSVBDSCVTBACCY Direction: Forward Position #: 2 Overlap #: 19 Alignment: -HWDAGHACRHHVHGKASVBBDSCVTBACCY CCCCMAAMCAMCCMCMMMCV----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Original Motif MGGTBAVGSDBVSGYHSDVGRTGYTMTGDGG VHRGGTCABDBTGMCCTB MGGTBAVGSDBVSGYHSDVDRKGTCABDDKGMCCTB Direction: Forward Position #: 19 Overlap #: 13 Alignment: MGGTBAVGSDBVSGYHSDVGRTGYTMTGDGG----- ------------------VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 Combined Motif Reverse Complement Original Motif BAGGYCRHHVTGACRMHVHSHMCSVBDSCVTBACCY RGKTCABVVRGAGGTCA BAGGYCRHHVTGACRMHVHSHRGBTCABVVDGASSTCA Direction: Forward Position #: 22 Overlap #: 15 Alignment: BAGGYCRHHVTGACRMHVHSHMCSVBDSCVTBACCY-- ---------------------RGKTCABVVRGAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif BAGGYCRHHVTGACRMHVHSHRGBTCABVVDGASSTCA TTCAGCACCATGGACAGCKCC TBMRGBMCCHHKGACAGCDVCHRGBTCABVVDGASSTCA Direction: Forward Position #: 2 Overlap #: 20 Alignment: -BAGGYCRHHVTGACRMHVHSHRGBTCABVVDGASSTCA TTCAGCACCATGGACAGCKCC------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRAVDR Original Motif Original Motif TBMRGBMCCHHKGACAGCDVCHRGBTCABVVDGASSTCA GGGTCAWBGRGTTCA GGGTCAHBVRGTWCMHHKGACAGCDVCHRGBTCABVVDGASSTCA Direction: Forward Position #: 7 Overlap #: 9 Alignment: ------TBMRGBMCCHHKGACAGCDVCHRGBTCABVVDGASSTCA GGGTCAWBGRGTTCA------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif GGGTCAHBVRGTWCMHHKGACAGCDVCHRGBTCABVVDGASSTCA BTRGGDCARAGGKCA GGGTCAHBVRGTWCMHHKGACAGCDVBDRGBBMAVGGKSASSTCA Direction: Forward Position #: 26 Overlap #: 15 Alignment: GGGTCAHBVRGTWCMHHKGACAGCDVCHRGBTCABVVDGASSTCA -------------------------BTRGGDCARAGGKCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Reverse Complement GGGTCAHBVRGTWCMHHKGACAGCDVBDRGBBMAVGGKSASSTCA SSGGGCGGSGGCGSS GGGTCAHBVRGTWCMHHKGACAGCDVBVVGGGMRRSGGCRSSTCA Direction: Forward Position #: 28 Overlap #: 15 Alignment: GGGTCAHBVRGTWCMHHKGACAGCDVBDRGBBMAVGGKSASSTCA ---------------------------SSGGGCGGSGGCGSS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Reverse Complement TGASSMGCCSMMRCCCVVBVHGCTGTCYHHYGWACKVBHTGACCC DVTGCATGCATGBH DVTGCATGMVBSBHCSMMRCCCVVBVHGCTGTCYHHYGWACKVBHTGACCC Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------TGASSMGCCSMMRCCCVVBVHGCTGTCYHHYGWACKVBHTGACCC DVTGCATGCATGBH------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 46 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Ar Reverse Complement Original Motif BAGGYCABHBTGACCKHV HWDAGHACRHHVTGTHCCHVMV HWHAGDWCAHHVTGWCCBHVMV Direction: Forward Position #: 3 Overlap #: 18 Alignment: --BAGGYCABHBTGACCKHV-- HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif VRVHBGGWCAVDDTGWHCTHWH DGVBCABTGDWGCGKRRCSR VRVHBGGWCAVGDKSWVYKDWGCGKRRCSR Direction: Forward Position #: 11 Overlap #: 12 Alignment: VRVHBGGWCAVDDTGWHCTHWH-------- ----------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Reverse Complement VRVHBGGWCAVGDKSWVYKDWGCGKRRCSR BGRRRGRGGRTGRTTYGGGG VRVHBGGWCAVGDKSWVYGRDDSGKGRYGRTTYGGGG Direction: Forward Position #: 18 Overlap #: 13 Alignment: VRVHBGGWCAVGDKSWVYKDWGCGKRRCSR------- -----------------BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement VRVHBGGWCAVGDKSWVYGRDDSGKGRYGRTTYGGGG GGYGCTGTCCATGGTGCTGAA GRHDCKGTCMVDGGTDCTGADDSGKGRYGRTTYGGGG Direction: Forward Position #: 1 Overlap #: 21 Alignment: VRVHBGGWCAVGDKSWVYGRDDSGKGRYGRTTYGGGG GGYGCTGTCCATGGTGCTGAA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif CCCCMAAMCMMCYCSHDTCAGHACCDBRGACRGHDMC VDBHMAGGTCACCCTGACCY CCCCMAAMCMMCYCSHDTCAGHVBBVHRGRYVRVBCYGACCY Direction: Forward Position #: 23 Overlap #: 15 Alignment: CCCCMAAMCMMCYCSHDTCAGHACCDBRGACRGHDMC----- ----------------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 Combined Motif Reverse Complement Original Motif MGGTCMGBVKVKMCKDVBBBDCTGADDSGKGRYGRTTYGGGG RGKTCABVVRGAGGTCA MGGTCMGBVKVKMCKRGKTBABBGAVRGGKSAYGRTTYGGGG Direction: Forward Position #: 16 Overlap #: 17 Alignment: MGGTCMGBVKVKMCKDVBBBDCTGADDSGKGRYGRTTYGGGG ---------------RGKTCABVVRGAGGTCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif CCCCMAAMCMTSRCCKVTCVBTBAYCMRGRYVRVBCYGACCY BTRGGDCARAGGKCA CCCCMAAMCMTSRCCKVTCVBTBABBVRGDCARAGVTSACCY Direction: Forward Position #: 25 Overlap #: 15 Alignment: CCCCMAAMCMTSRCCKVTCVBTBAYCMRGRYVRVBCYGACCY ------------------------BTRGGDCARAGGKCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Reverse Complement Reverse Complement MGGTSAVCTKTGHCMBBBTBABBGAVRGGKSAYGRTTYGGGG SSGGGCGGSGGCGSS MGGTSAVCTKTGHCMBBBTBABBGAVRGGKGRYGGBKBSGGG Direction: Forward Position #: 28 Overlap #: 15 Alignment: MGGTSAVCTKTGHCMBBBTBABBGAVRGGKSAYGRTTYGGGG ---------------------------SSGGGCGGSGGCGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif MGGTSAVCTKTGHCMBBBTBABBGAVRGGKGRYGGBKBSGGG BBVGCCBVGGCCTV MGGTSAVCTKTGHCMBBBTBABBGAVRSBBGSCGRGGCCKGG Direction: Forward Position #: 28 Overlap #: 14 Alignment: MGGTSAVCTKTGHCMBBBTBABBGAVRGGKGRYGGBKBSGGG ---------------------------BBVGCCBVGGCCTV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Reverse Complement Reverse Complement CCRGGCCMCGSCBBSKVTCVBTBABBVRGDCARAGVTSACCY AKGYYCAAAGRTCA CCRGGCCMCGSCBBSKVTVDGTBMAMAGGTCARAGVTSACCY Direction: Forward Position #: 19 Overlap #: 14 Alignment: CCRGGCCMCGSCBBSKVTCVBTBABBVRGDCARAGVTSACCY ------------------AKGYYCAAAGRTCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 47 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb Arnt Original Motif Original Motif CACGTG CACGTG CACGTG Direction: Forward Position #: 1 Overlap #: 6 Alignment: CACGTG CACGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MYCMAX Reverse Complement Reverse Complement CACGTG ACCACGTGSTM ACCACGTGSTM Direction: Forward Position #: 3 Overlap #: 6 Alignment: --CACGTG--- ACCACGTGSTM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement ACCACGTGSTM DCCACGTGCV DCCACGTGSDM Direction: Forward Position #: 1 Overlap #: 10 Alignment: ACCACGTGSTM DCCACGTGCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement DCCACGTGSDM GCCACGTGSD DCCACGTGSDM Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCACGTGSDM GCCACGTGSD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HIF1AARNT Reverse Complement Original Motif RHSCACGTGGH VBACGTGV VBRCRYGYGGH Direction: Forward Position #: 1 Overlap #: 8 Alignment: RHSCACGTGGH VBACGTGV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ArntAhr Reverse Complement Reverse Complement DCCMCMMGKBV CACGCM CMCGCMMGKBV Direction: Forward Position #: 1 Overlap #: 6 Alignment: DCCMCMMGKBV CACGCM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ZEB1 Combined Motif Reverse Complement Reverse Complement VBRCRYGCGYG HAGGTG VHASGTGCGYG Direction: Forward Position #: 2 Overlap #: 6 Alignment: VBRCRYGCGYG -HAGGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Original Motif VHASGTGCGYG HGCGTGGGCGK HGCRBGKGCGBG Direction: Forward Position #: 2 Overlap #: 10 Alignment: -VHASGTGCGYG HGCGTGGGCGK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Original Motif Original Motif HGCRBGKGCGBG DHAYAYAYRTGTGTRTDH DHRYRYRBGYGTGTRTDH Direction: Forward Position #: 2 Overlap #: 12 Alignment: -HGCRBGKGCGBG----- DHAYAYAYRTGTGTRTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Reverse Complement Original Motif HDAMACACKCVKKKKKHD BAACGTCCGC HDACRYMCGCVKKKKKHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HDAMACACKCVKKKKKHD BAACGTCCGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 48 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- EWSR1-FLI1 NR1H2RXRA Original Motif Original Motif GGAAGGAAGGAAGGAAGG AAAGGTCAAAGGTCAAC GGAAGGAARGRWSRAAGGTCAAC Direction: Backward Position #: 6 Overlap #: 12 Alignment: GGAAGGAAGGAAGGAAGG----- ------AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Original Motif Reverse Complement GGAAGGAARGRWSRAAGGTCAAC AAAAAAACAAARRA AARRAARGAAAGRWSRAAGGTCAAC Direction: Forward Position #: 3 Overlap #: 12 Alignment: --GGAAGGAARGRWSRAAGGTCAAC AAAAAAACAAARRA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Reverse Complement AARRAARGAAAGRWSRAAGGTCAAC BGRRRGRGGRTGRTTYGGGG BGRRRGRGGRTGRTTYRRGRAARGAAAGRWSRAAGGTCAAC Direction: Forward Position #: 17 Overlap #: 4 Alignment: ----------------AARRAARGAAAGRWSRAAGGTCAAC BGRRRGRGGRTGRTTYGGGG--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Original Motif Reverse Complement BGRRRGRGGRTGRTTYRRGRAARGAAAGRWSRAAGGTCAAC GGGGGYGGGG BGRRRGRGGGKGGYKKGGGRAARGAAAGRWSRAAGGTCAAC Direction: Forward Position #: 9 Overlap #: 10 Alignment: BGRRRGRGGRTGRTTYRRGRAARGAAAGRWSRAAGGTCAAC --------GGGGGYGGGG----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- rrAGGGGGArr Combined Motif Original Motif Original Motif BGRRRGRGGGKGGYKKGGGRAARGAAAGRWSRAAGGTCAAC VVAGGGGGAVV BGRRRGRGGGKGGBAGGGGGAADGAAAGRWSRAAGGTCAAC Direction: Forward Position #: 13 Overlap #: 11 Alignment: BGRRRGRGGGKGGYKKGGGRAARGAAAGRWSRAAGGTCAAC ------------VVAGGGGGAVV------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 13 Original Motif Original Motif BGRRRGRGGGKGGBAGGGGGAADGAAAGRWSRAAGGTCAAC GAGRCAGR GAGRCAGRGGGKGGBAGGGGGAADGAAAGRWSRAAGGTCAAC Direction: Forward Position #: 2 Overlap #: 7 Alignment: -BGRRRGRGGGKGGBAGGGGGAADGAAAGRWSRAAGGTCAAC GAGRCAGR---------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Reverse Complement Original Motif GTTGACCTTKSWKCTTTCHTTCCCCCTVCCRCCCMCTGMCTC CYBCCTCC GTTGACCTTKSWKCTTTCYBYCYCCCTVCCRCCCMCTGMCTC Direction: Forward Position #: 18 Overlap #: 8 Alignment: GTTGACCTTKSWKCTTTCHTTCCCCCTVCCRCCCMCTGMCTC -----------------CYBCCTCC----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dwCTTTTCwy Combined Motif Original Motif Original Motif GTTGACCTTKSWKCTTTCYBYCYCCCTVCCRCCCMCTGMCTC DHCTTTTCHH GTTGACYTTTCWBCTTTCYBYCYCCCTVCCRCCCMCTGMCTC Direction: Forward Position #: 4 Overlap #: 10 Alignment: GTTGACCTTKSWKCTTTCYBYCYCCCTVCCRCCCMCTGMCTC ---DHCTTTTCHH----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Reverse Complement Original Motif GAGRCAGRGGGKGGBAGGGMGKVKGAAAGVWGAAAMGTCAAC ASASAGAA ASAGAGAAAGRGGGKGGBAGGGMGKVKGAAAGVWGAAAMGTCAAC Direction: Forward Position #: 4 Overlap #: 5 Alignment: ---GAGRCAGRGGGKGGBAGGGMGKVKGAAAGVWGAAAMGTCAAC ASASAGAA------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif ASAGAGAAAGRGGGKGGBAGGGMGKVKGAAAGVWGAAAMGTCAAC GCTGGGAW ASAGAGAAAGRGGGKGGCTGGGADKVKGAAAGVWGAAAMGTCAAC Direction: Forward Position #: 17 Overlap #: 8 Alignment: ASAGAGAAAGRGGGKGGBAGGGMGKVKGAAAGVWGAAAMGTCAAC ----------------GCTGGGAW--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 49 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIF1AARNT Mycn Original Motif Reverse Complement VBACGTGV GCCACGTGSD GSCACGTGSD Direction: Forward Position #: 2 Overlap #: 8 Alignment: -VBACGTGV- GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement GSCACGTGSD DCCACGTGCV GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GSCACGTGSD DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MYCMAX Original Motif Reverse Complement GCCACGTGSV ACCACGTGSTM DCCACGTGSDM Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSV- ACCACGTGSTM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Reverse Complement Reverse Complement RDSCACGTGGD GCGGACGTTV GCGSACGTKGD Direction: Forward Position #: 1 Overlap #: 10 Alignment: RDSCACGTGGD GCGGACGTTV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Reverse Complement Reverse Complement DCYACGTSCGC VRVDGGHACAVDDKGTHCTDWH VVHASGTVCVVDDKGTHCTDWH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DCYACGTSCGC----------- VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yayAyAyACATrya Combined Motif Original Motif Reverse Complement VVHASGTVCVVDDKGTHCTDWH DHKATGTKTKTGTD VVHASGTDCDABGTGTKYKDDH Direction: Forward Position #: 8 Overlap #: 14 Alignment: VVHASGTVCVVDDKGTHCTDWH -------DHKATGTKTKTGTD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Original Motif Original Motif VVHASGTDCDABGTGTKYKDDH HVCCAGTGCABD VVCMMGTGCAVDGTGTKYKDDH Direction: Forward Position #: 1 Overlap #: 12 Alignment: VVHASGTDCDABGTGTKYKDDH HVCCAGTGCABD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif HDDRMRACACDBTGCACYRGVV DGVBCABTGDWGCGKRRCSR HDDRMRACACDDDGCACTGRDGCGKRRCSR Direction: Forward Position #: 11 Overlap #: 12 Alignment: HDDRMRACACDBTGCACYRGVV-------- ----------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Reverse Complement MSGKKRCGCDMCAGTGCDHDGTGTKYKDDH BGRRRGRGGRTGRTTYGGGG MSGKKRCGCDMCAGTGVDVGGKGKTKKTTYGGGG Direction: Forward Position #: 15 Overlap #: 16 Alignment: MSGKKRCGCDMCAGTGCDHDGTGTKYKDDH---- --------------BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Reverse Complement MSGKKRCGCDMCAGTGVDVGGKGKTKKTTYGGGG DVTGCATGCATGBH DVTGCATGCABGKBRCGCDMCAGTGVDVGGKGKTKKTTYGGGG Direction: Forward Position #: 10 Overlap #: 5 Alignment: ---------MSGKKRCGCDMCAGTGVDVGGKGKTKKTTYGGGG DVTGCATGCATGBH----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 50 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A PPARGRXRA Reverse Complement Reverse Complement TGMYCTTTGBCCK TGRCCTKTGHCCKAB TGACCTTTGBCCKAB Direction: Backward Position #: 3 Overlap #: 13 Alignment: TGMYCTTTGBCCK-- TGRCCTKTGHCCKAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Original Motif TGACCTTTGBCCKAB TGAMCTTTGMMCYT TGACCTTTGVMCBHB Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGACCTTTGBCCKAB TGAMCTTTGMMCYT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif BHVGRVCAAAGGTCA AAAGGTCAAAGGTCAAC VAAGGTCAAAGGTCAAC Direction: Forward Position #: 1 Overlap #: 15 Alignment: BHVGRVCAAAGGTCA-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRRAR_DR5 Original Motif Original Motif VAAGGTCAAAGGTCAAC RGKTCABVVRGAGGTCA RGDTMRBBCARAGGTCAAC Direction: Forward Position #: 3 Overlap #: 15 Alignment: --VAAGGTCAAAGGTCAAC RGKTCABVVRGAGGTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Original Motif RGDTMRBBCARAGGTCAAC DGVBCABTGDWGCGKRRCSR DGVBCABTGDWGCGKRGVBVRBBCARAGGTCAAC Direction: Forward Position #: 16 Overlap #: 5 Alignment: ---------------RGDTMRBBCARAGGTCAAC DGVBCABTGDWGCGKRRCSR-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Original Motif GTTGACCTKTGVBKBVVCKRCGCWDCABTGBBCD VHRGGTCABDBTGMCCTB GTTGACCTDKGDCWBDBYGACSYDDCABTGBBCD Direction: Forward Position #: 7 Overlap #: 18 Alignment: GTTGACCTKTGVBKBVVCKRCGCWDCABTGBBCD ------VHRGGTCABDBTGMCCTB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Original Motif GTTGACCTDKGDCWBDBYGACSYDDCABTGBBCD HWDAGHACRHHVTGTHCCHVMV GTTGACCTDKGDCWBDBYDDMVSHWCABHVYGHDCCHVMV Direction: Forward Position #: 19 Overlap #: 16 Alignment: GTTGACCTDKGDCWBDBYGACSYDDCABTGBBCD------ ------------------HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif GTTGACCTDKGDCWBDBYDDMVSHWCABHVYGHDCCHVMV VDBHMAGGTCACCCTGACCY GTTGACCTDKGDCWBDBYDDMVSHDCVBHRBGTHMCHVTGACCY Direction: Forward Position #: 25 Overlap #: 16 Alignment: GTTGACCTDKGDCWBDBYDDMVSHWCABHVYGHDCCHVMV---- ------------------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Original Motif MGGTCAVDGRDACBKDBBGDHSBRDHMBHBWGDCYHAGGTCAAC GGGGCCCAAGGGGG GRGGYCMDVGGGRSBKDBBGDHSBRDHMBHBWGDCYHAGGTCAAC Direction: Forward Position #: 2 Overlap #: 13 Alignment: -MGGTCAVDGRDACBKDBBGDHSBRDHMBHBWGDCYHAGGTCAAC GGGGCCCAAGGGGG------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yayAyAyACATrya Combined Motif Original Motif Reverse Complement GRGGYCMDVGGGRSBKDBBGDHSBRDHMBHBWGDCYHAGGTCAAC DHKATGTKTKTGTD GRGGYCMDVGGGRSBBKATGTKKKTKBHBHBWGDCYHAGGTCAAC Direction: Forward Position #: 15 Overlap #: 14 Alignment: GRGGYCMDVGGGRSBKDBBGDHSBRDHMBHBWGDCYHAGGTCAAC --------------DHKATGTKTKTGTD----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 51 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- INSM1 PPARGRXRA Original Motif Original Motif TGYCAGGGGGCR BTRGGDCARAGGKCA BTRKGBCAGRGGKCA Direction: Forward Position #: 4 Overlap #: 12 Alignment: ---TGYCAGGGGGCR BTRGGDCARAGGKCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Original Motif Reverse Complement BTRKGBCAGRGGKCA SSGGGCGGSGGCGSS SSGGGCGGSGGCGVBGBCAGRGGKCA Direction: Forward Position #: 12 Overlap #: 4 Alignment: -----------BTRKGBCAGRGGKCA SSGGGCGGSGGCGSS----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Reverse Complement SSGGGCGGSGGCGVBGBCAGRGGKCA BGRRRGRGGRTGRTTYGGGG SSGGGCGGSGGCGVBGDVAGRGGGYGRTTYGGGG Direction: Forward Position #: 15 Overlap #: 12 Alignment: SSGGGCGGSGGCGVBGBCAGRGGKCA-------- --------------BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Original Motif Reverse Complement SSGGGCGGSGGCGVBGDVAGRGGGYGRTTYGGGG GYRYCCMTKGGYRSC GYRYCCVDGGGYGGSGGCGVBGDVAGRGGGYGRTTYGGGG Direction: Forward Position #: 7 Overlap #: 9 Alignment: ------SSGGGCGGSGGCGVBGDVAGRGGGYGRTTYGGGG GYRYCCMTKGGYRSC------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Reverse Complement CCCCMAAMCMCCCMCTVHCVVCGCCSCCKCCCDVGGKKKC TGMYCTTTGBCCK CCCCMAAMCMCCCMCTDBMHCYKYSSCCKCCCDVGGKKKC Direction: Forward Position #: 17 Overlap #: 13 Alignment: CCCCMAAMCMCCCMCTVHCVVCGCCSCCKCCCDVGGKKKC ----------------TGMYCTTTGBCCK----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Reverse Complement Original Motif GYRYCCVDGGGYGGSSMRMGDRBDAGRGGGYGRTTYGGGG VVGCSGGGCGBB GYRYCCVDGGGYGGSSMRMGDRVVGVGGGGYGVBTYGGGG Direction: Forward Position #: 23 Overlap #: 12 Alignment: GYRYCCVDGGGYGGSSMRMGDRBDAGRGGGYGRTTYGGGG ----------------------VVGCSGGGCGBB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif GYRYCCVDGGGYGGSSMRMGDRVVGVGGGGYGVBTYGGGG VDBHMAGGTCACCCTGACCY GYRYCCVDGGGYGGSSMRMGDVBVVVRGGKCRVBYTGRSVY Direction: Forward Position #: 22 Overlap #: 19 Alignment: GYRYCCVDGGGYGGSSMRMGDRVVGVGGGGYGVBTYGGGG- ---------------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 52 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 ccCCmCACCcc Original Motif Reverse Complement DGGGYGKGGC DDGGTGRGGBD DGGGTGGGGBD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DGGGYGKGGC- DDGGTGRGGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Reverse Complement Original Motif HBCCCCACCCH SSCGCCSCCGCCCSS SSCGCCSCCGCCCCCCACCCH Direction: Forward Position #: 11 Overlap #: 5 Alignment: ----------HBCCCCACCCH SSCGCCSCCGCCCSS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Reverse Complement DGGGTGGGGGGCGGSGGCGSS BGRRRGRGGRTGRTTYGGGG DGGGTGGGGBGVGGGGGSGTGRTTYGGGG Direction: Forward Position #: 10 Overlap #: 12 Alignment: DGGGTGGGGGGCGGSGGCGSS-------- ---------BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif CCCCMAAMCACSCCCCCBCBCCCCACCCH BBVGCCBVGGCCTV CCCCMAAMCACSSSCCBVSGCCTCACCCH Direction: Forward Position #: 11 Overlap #: 14 Alignment: CCCCMAAMCACSCCCCCBCBCCCCACCCH ----------BBVGCCBVGGCCTV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Original Motif Original Motif CCCCMAAMCACSSSCCBVSGCCTCACCCH BBCRCCYCCGBB CCCCMAAMCVCGCCCCCGSSCCTCACCCH Direction: Forward Position #: 9 Overlap #: 12 Alignment: CCCCMAAMCACSSSCCBVSGCCTCACCCH --------BBCRCCYCCGBB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Original Motif Original Motif CCCCMAAMCVCGCCCCCGSSCCTCACCCH CCCCKCCCCC CCCCMAAMCVCGCCCCCGCCCCBCMCCCH Direction: Forward Position #: 19 Overlap #: 10 Alignment: CCCCMAAMCVCGCCCCCGSSCCTCACCCH ------------------CCCCKCCCCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Original Motif CCCCMAAMCVCGCCCCCGCCCCBCMCCCH CAYACACACACACA CAYACMCMCAMACMVCGCCCCCGCCCCBCMCCCH Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----CCCCMAAMCVCGCCCCCGCCCCBCMCCCH CAYACACACACACA-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- INSM1 Combined Motif Original Motif Reverse Complement CAYACMCMCAMACMVCGCCCCCGCCCCBCMCCCH MGCCCCCTGMCA CAYACMCMCAMACMMSBCCCCHGMCMCBCMCCCH Direction: Forward Position #: 15 Overlap #: 12 Alignment: CAYACMCMCAMACMVCGCCCCCGCCCCBCMCCCH --------------MGCCCCCTGMCA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Original Motif Reverse Complement CAYACMCMCAMACMMSBCCCCHGMCMCBCMCCCH DCCACGTGCV CAYACMCMCAMACMMBCCMCSTGCVMCBCMCCCH Direction: Forward Position #: 16 Overlap #: 10 Alignment: CAYACMCMCAMACMMSBCCCCHGMCMCBCMCCCH ---------------DCCACGTGCV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCTswGCCms Reverse Complement Original Motif DGGGRGVGRVGCASGRGGBRYGTRTGYGYGTKTG VBGCTSAGCCHB DGGSKSAGCCVCASGRGGBRYGTRTGYGYGTKTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: DGGGRGVGRVGCASGRGGBRYGTRTGYGYGTKTG VBGCTSAGCCHB---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 53 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF ssCrCYyYCGss Original Motif Original Motif BAACGTCCGC BBCRCCYCCGBB BBMACSTCCGCB Direction: Backward Position #: 2 Overlap #: 10 Alignment: -BAACGTCCGC- BBCRCCYCCGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MYCMAX Original Motif Reverse Complement BBMACSTCCGCB ACCACGTGSTM HCCACGTSCKHB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBMACSTCCGCB ACCACGTGSTM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Original Motif HCCACGTSCKHB VHRGGTCABDBTGMCCTB VHRGGTCABDBTGHCCWCGTSCKHB Direction: Forward Position #: 14 Overlap #: 5 Alignment: -------------HCCACGTSCKHB VHRGGTCABDBTGMCCTB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Reverse Complement BDYGSACGWGGHCABHBTGACCKHV MGGTCAGGGTGACCTRDBHV BDYGSACGWGGHCAHBGTSASBKTGACCTRDBHV Direction: Forward Position #: 15 Overlap #: 11 Alignment: BDYGSACGWGGHCABHBTGACCKHV--------- --------------MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rmACAGCAGsr Reverse Complement Original Motif VDBHMAGGTCAYBSTSACBDTGHCCWCGTSCKHB VVACAGCAGVD VVACAGCAGVVMAGGTCAYBSTSACBDTGHCCWCGTSCKHB Direction: Forward Position #: 8 Overlap #: 4 Alignment: -------VDBHMAGGTCAYBSTSACBDTGHCCWCGTSCKHB VVACAGCAGVD------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Original Motif VVACAGCAGVVMAGGTCAYBSTSACBDTGHCCWCGTSCKHB HWDAGHACRHHVTGTHCCHVMV VVACAGCAGVVMAGGTCAYBSTBAVGDWSACCVYGTVCBHVMV Direction: Forward Position #: 22 Overlap #: 20 Alignment: VVACAGCAGVVMAGGTCAYBSTSACBDTGHCCWCGTSCKHB-- ---------------------HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 54 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Mycn Reverse Complement Reverse Complement DCCACGTGCV GCCACGTGSD GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCACGTGCV GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MYCMAX Original Motif Reverse Complement GCCACGTGSV ACCACGTGSTM DCCACGTGSDM Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSV- ACCACGTGSTM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Original Motif Original Motif DCCACGTGSDM HVCCAGTGCABD VCCMMGTGCAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: DCCACGTGSDM- HVCCAGTGCABD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGssCGss Original Motif Reverse Complement VCCMMGTGCAHD VSCGSSCGSB VBCGVGYGCVHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: VCCMMGTGCAHD VSCGSSCGSB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Reverse Complement VBCGVGYGCVHD MGCCCCCTGMCA MDCCCCSTGMCAD Direction: Forward Position #: 2 Overlap #: 11 Alignment: -VBCGVGYGCVHD MGCCCCCTGMCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGrGCGss Reverse Complement Reverse Complement DTGRCASGGGGHR VBCGCMCGSV BBCGCMCGSGGHR Direction: Forward Position #: 1 Overlap #: 10 Alignment: DTGRCASGGGGHR VBCGCMCGSV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCksCGss Original Motif Original Motif BBCGCMCGSGGHR VVCGCKSCGBB BBCGCHSSGSBHR Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBCGCMCGSGGHR VVCGCKSCGBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Reverse Complement BBCGCHSSGSBHR GCCYCMCCCD BCCBCHCCSDBHR Direction: Forward Position #: 1 Overlap #: 10 Alignment: BBCGCHSSGSBHR GCCYCMCCCD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCKCwsCGss Original Motif Original Motif BCCBCHCCSDBHR BVCGCWSCGBV BBCGCWCCGVBHR Direction: Forward Position #: 1 Overlap #: 11 Alignment: BCCBCHCCSDBHR BVCGCWSCGBV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Reverse Complement MDBVCGGWGCGBB VAGGCCBBGGCVBB VAGGCCBBGGMVBBCGGWGCGBB Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------MDBVCGGWGCGBB VAGGCCBBGGCVBB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 55 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MYCMAX RREB1 Reverse Complement Original Motif ACCACGTGSTM CCCCMAAMCAMCCMCMMMCV CCCCMMACSWSCHMCMMMCV Direction: Backward Position #: 7 Overlap #: 11 Alignment: ---ACCACGTGSTM------ CCCCMAAMCAMCCMCMMMCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Reverse Complement BGRRRGRDGSWSGTRRGGGG VRVDGGHACAVDDKGTHCTDWH BGRVDGGDRCWSGTKGKDSKDWH Direction: Forward Position #: 2 Overlap #: 19 Alignment: BGRRRGRDGSWSGTRRGGGG--- -VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Original Motif Reverse Complement BGRVDGGDRCWSGTKGKDSKDWH DBTGCACTGGVD DBTGCACTGGDDCWSGTKGKDSKDWH Direction: Forward Position #: 4 Overlap #: 9 Alignment: ---BGRVDGGDRCWSGTKGKDSKDWH DBTGCACTGGVD-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Original Motif Reverse Complement DBTGCACTGGDDCWSGTKGKDSKDWH GYRYCCMTKGGYRSC GBVTCCAHKGGYRSMSGTKGKDSKDWH Direction: Forward Position #: 2 Overlap #: 14 Alignment: -DBTGCACTGGDDCWSGTKGKDSKDWH GYRYCCMTKGGYRSC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Original Motif GBVTCCAHKGGYRSMSGTKGKDSKDWH GGGGCCCAAGGGGG GGGKCCMWDGGGGSMSGTKGKDSKDWH Direction: Forward Position #: 1 Overlap #: 14 Alignment: GBVTCCAHKGGYRSMSGTKGKDSKDWH GGGGCCCAAGGGGG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- INSM1 Combined Motif Original Motif Original Motif GGGKCCMWDGGGGSMSGTKGKDSKDWH TGYCAGGGGGCR GGGKCYVHHRGGGGBCRTKGKDSKDWH Direction: Forward Position #: 6 Overlap #: 12 Alignment: GGGKCCMWDGGGGSMSGTKGKDSKDWH -----TGYCAGGGGGCR---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement GGGKCYVHHRGGGGBCRTKGKDSKDWH GGYGCTGTCCATGGTGCTGAA GGVGCTGTCVRKGGTSSTGRDDSKDWH Direction: Forward Position #: 1 Overlap #: 21 Alignment: GGGKCYVHHRGGGGBCRTKGKDSKDWH GGYGCTGTCCATGGTGCTGAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement HWDYSHDMCASSACCYMVGACAGCVCC BAGGYCABHBTGACCKHV HWDYSHDMCASSACCBMGGHCASBBYSACCKHV Direction: Forward Position #: 16 Overlap #: 12 Alignment: HWDYSHDMCASSACCYMVGACAGCVCC------ ---------------BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif HWDYSHDMCASSACCBMGGHCASBBYSACCKHV VDBHMAGGTCACCCTGACCY HWDYSHDMCASSACCBMGGHVVBHVHGRYCDHVCTGACCY Direction: Forward Position #: 21 Overlap #: 13 Alignment: HWDYSHDMCASSACCBMGGHCASBBYSACCKHV------- --------------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 Combined Motif Original Motif Reverse Complement HWDYSHDMCASSACCBMGGHVVBHVHGRYCDHVCTGACCY TGACCTCKVVBTGAYCK HWDYSHDMCASSACYBABSTVDVVBTGAYCKHVCTGACCY Direction: Forward Position #: 15 Overlap #: 17 Alignment: HWDYSHDMCASSACCBMGGHVVBHVHGRYCDHVCTGACCY --------------TGACCTCKVVBTGAYCK--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 56 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Myc Original Motif Original Motif HSCACGTGGC VGCACGTGGH VSCACGTGGC Direction: Backward Position #: 1 Overlap #: 10 Alignment: HSCACGTGGC VGCACGTGGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MYCMAX Reverse Complement Reverse Complement GCCACGTGSV ACCACGTGSTM DCCACGTGSDM Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSV- ACCACGTGSTM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Original Motif Original Motif DCCACGTGSDM HVCCAGTGCABD VCCMMGTGCAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: DCCACGTGSDM- HVCCAGTGCABD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGssCGss Original Motif Reverse Complement VCCMMGTGCAHD VSCGSSCGSB VBCGVGYGCVHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: VCCMMGTGCAHD VSCGSSCGSB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGrGCGss Original Motif Original Motif VBCGVGYGCVHD VSCGRGCGBV VSCGVGCGSVHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: VBCGVGYGCVHD VSCGRGCGBV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Original Motif VSCGVGCGSVHD TGYCAGGGGGCR TGBVMGGGSGCRHD Direction: Forward Position #: 3 Overlap #: 10 Alignment: --VSCGVGCGSVHD TGYCAGGGGGCR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Reverse Complement Reverse Complement DDMGCSCCCRVVCA BBCGCCCSGCVV DVVSSCCCCRCVCA Direction: Forward Position #: 2 Overlap #: 12 Alignment: DDMGCSCCCRVVCA -BBCGCCCSGCVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCksCGss Combined Motif Original Motif Original Motif DVVSSCCCCRCVCA VVCGCKSCGBB DVVCGCBSCGSVCA Direction: Forward Position #: 2 Overlap #: 11 Alignment: DVVSSCCCCRCVCA -VVCGCKSCGBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Original Motif Reverse Complement DVVCGCBSCGSVCA GCCYCMCCCD DBCCBCMCCSVVCA Direction: Forward Position #: 2 Overlap #: 10 Alignment: DVVCGCBSCGSVCA -GCCYCMCCCD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement TGVVSGGRGBGGBD MGGTCAGGGTGACCTRDBHV MGGTCAGGGTGACCTGVBVGGRGBGGBD Direction: Forward Position #: 15 Overlap #: 6 Alignment: --------------TGVVSGGRGBGGBD MGGTCAGGGTGACCTRDBHV-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 57 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MZF1_5-13 rrAGGGGGArr Original Motif Original Motif BKAGGGGDAD VVAGGGGGAVV BDAGGGGGAVV Direction: Forward Position #: 1 Overlap #: 10 Alignment: BKAGGGGDAD- VVAGGGGGAVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Reverse Complement Reverse Complement VBTCCCCCTHB MGCCCCCTGMCA MKYCCCCYKHCA Direction: Forward Position #: 1 Overlap #: 11 Alignment: VBTCCCCCTHB- MGCCCCCTGMCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Original Motif TGDRKGGGGMYR DGVBCABTGDWGCGKRRCSR DGVBCABTGDWGCKKRRBGGGGMYR Direction: Forward Position #: 14 Overlap #: 7 Alignment: -------------TGDRKGGGGMYR DGVBCABTGDWGCGKRRCSR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif DGVBCABTGDWGCKKRRBGGGGMYR BTRGGDCARAGGKCA DGVBCABTSDRGSKBARVGGGSAYR Direction: Forward Position #: 9 Overlap #: 15 Alignment: DGVBCABTGDWGCKKRRBGGGGMYR --------BTRGGDCARAGGKCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Reverse Complement Reverse Complement MKTSCCCBKTBYSCKDSABTGBBCD GYRYCCMTKGGYRSC VBDYCCCTKKGYRCHDSABTGBBCD Direction: Forward Position #: 1 Overlap #: 15 Alignment: MKTSCCCBKTBYSCKDSABTGBBCD GYRYCCMTKGGYRSC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Reverse Complement HGVBCABTSDDGMKCYRAGGGKDBV BGRRRGRGGRTGRTTYGGGG HGVBCABTSDBGVDVBRRGGKGRYHYGGGG Direction: Forward Position #: 11 Overlap #: 15 Alignment: HGVBCABTSDDGMKCYRAGGGKDBV----- ----------BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Original Motif HGVBCABTSDBGVDVBRRGGKGRYHYGGGG RGGBCAAAGKYCA HGVBCABTSDVGDBCVRAGGKSRYHYGGGG Direction: Forward Position #: 11 Overlap #: 13 Alignment: HGVBCABTSDBGVDVBRRGGKGRYHYGGGG ----------RGGBCAAAGKYCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 Combined Motif Reverse Complement Reverse Complement CCCCMHMKSRCCTKBGBHCVDSABTGBBCD TGACCTCKVVBTGAYCK CCCCMHMTGACCTBKVVBYVACCKTGBBCD Direction: Forward Position #: 8 Overlap #: 17 Alignment: CCCCMHMKSRCCTKBGBHCVDSABTGBBCD -------TGACCTCKVVBTGAYCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Original Motif Original Motif CCCCMHMTGACCTBKVVBYVACCKTGBBCD HBCCMCACCHH CCCCMCAYCVCCTBKVVBYVACCKTGBBCD Direction: Forward Position #: 1 Overlap #: 11 Alignment: CCCCMHMTGACCTBKVVBYVACCKTGBBCD HBCCMCACCHH------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Reverse Complement Reverse Complement HGVBCAYGGTVMBVVRVAGGBGKTGRGGGG SSGGGCGGSGGCGSS HGVBCAYGGTVMBVVRVVGGGGBKGGGGSGSS Direction: Forward Position #: 18 Overlap #: 13 Alignment: HGVBCAYGGTVMBVVRVAGGBGKTGRGGGG-- -----------------SSGGGCGGSGGCGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 58 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NFKB1 Tcfcp2l1 Original Motif Reverse Complement GGGGRTTCCCC CKGGDTBDMMCTGG SGGGDTBBCCCTGG Direction: Backward Position #: 4 Overlap #: 11 Alignment: GGGGRTTCCCC--- CKGGDTBDMMCTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCTswGCCms Original Motif Reverse Complement SGGGDTBBCCCTGG BDGGCTSAGCBV SDGGCTBASCCDGG Direction: Forward Position #: 1 Overlap #: 12 Alignment: SGGGDTBBCCCTGG BDGGCTSAGCBV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement SDGGCTBASCCDGG GGYGCTGTCCATGGTGCTGAA GGBGCTGWCCMDGGTGCTGAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: SDGGCTBASCCDGG------- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Reverse Complement GGBGCTGWCCMDGGTGCTGAA SSGGGCGGSGGCGSS SBGGSYGDSSSHGGTGCTGAA Direction: Forward Position #: 1 Overlap #: 15 Alignment: GGBGCTGWCCMDGGTGCTGAA SSGGGCGGSGGCGSS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement TTCAGCACCDSSSHCMSCCBS MSGKKRCGCWDCABTGBBCD TTCAGCACCVSGBBVMSCHBCABTGBBCD Direction: Forward Position #: 10 Overlap #: 12 Alignment: TTCAGCACCDSSSHCMSCCBS-------- ---------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Original Motif TTCAGCACCVSGBBVMSCHBCABTGBBCD CCCCMAAMCAMCCMCMMMCV TTCAGCMCCCMRVHCAVCCVCMVHSHBCD Direction: Forward Position #: 7 Overlap #: 20 Alignment: TTCAGCACCVSGBBVMSCHBCABTGBBCD ------CCCCMAAMCAMCCMCMMMCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCwGGCCwGCss Combined Motif Reverse Complement Reverse Complement HGVDSDVYGVGGVTGDBKYGGGRGCTGAA BBGCTGGCCWGBB HGVDSDVYGVDGCTGGCCHGGGRGCTGAA Direction: Forward Position #: 10 Overlap #: 13 Alignment: HGVDSDVYGVGGVTGDBKYGGGRGCTGAA ---------BBGCTGGCCWGBB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Reverse Complement Reverse Complement TTCAGCMCCCHGGCCAGCHVCMVHSHBCD GCCYCMCCCD TTCAGCMCCCDSSYCMSCCDCMVHSHBCD Direction: Forward Position #: 11 Overlap #: 10 Alignment: TTCAGCMCCCHGGCCAGCHVCMVHSHBCD ----------GCCYCMCCCD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- mkARGCCACG Combined Motif Original Motif Original Motif TTCAGCMCCCDSSYCMSCCDCMVHSHBCD CKAGGCCACG TYBAGSCCACGSSYCMSCCDCMVHSHBCD Direction: Forward Position #: 2 Overlap #: 10 Alignment: TTCAGCMCCCDSSYCMSCCDCMVHSHBCD -CKAGGCCACG------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Reverse Complement TYBAGSCCACGSSYCMSCCDCMVHSHBCD CCCCCTTGGGCCCC TYBAGSCCMCSCYYSVSCCHCMVHSHBCD Direction: Forward Position #: 8 Overlap #: 14 Alignment: TYBAGSCCACGSSYCMSCCDCMVHSHBCD -------CCCCCTTGGGCCCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 59 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA REST Reverse Complement Reverse Complement GTTGACCTTTGACCTTT GGYGCTGTCCATGGTGCTGAA GGYGYTGWCCTTKGWSCTKWA Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---GTTGACCTTTGACCTTT- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Reverse Complement GGYGYTGWCCTTKGWSCTKWA TGRCCTKTGHCCKAB TGRSCKYTGHCCTWBGWSCTKWA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --GGYGYTGWCCTTKGWSCTKWA TGRCCTKTGHCCKAB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRAVDR Original Motif Reverse Complement TGRSCKYTGHCCTWBGWSCTKWA TGAACKCBWTGACCC TGWRCBCBHTGACCHWBGWSCTKWA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --TGRSCKYTGHCCTWBGWSCTKWA TGAACKCBWTGACCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement TGWRCBCBHTGACCHWBGWSCTKWA MGGTCAGGGTGACCTRDBHV HGDDCDVBBTGACCHDBGHVCTKWA Direction: Forward Position #: 1 Overlap #: 20 Alignment: TGWRCBCBHTGACCHWBGWSCTKWA MGGTCAGGGTGACCTRDBHV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Original Motif Reverse Complement HGDDCDVBBTGACCHDBGHVCTKWA AAAAAAACAAARRA AAAAAAACAAWRRACDVBBTGACCHDBGHVCTKWA Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------HGDDCDVBBTGACCHDBGHVCTKWA AAAAAAACAAARRA--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif EWSR1-FLI1 Original Motif Original Motif AAAAAAACAAWRRACDVBBTGACCHDBGHVCTKWA GGAAGGAAGGAAGGAAGG GGAAGGAARRAARSAARGRACDVBBTGACCHDBGHVCTKWA Direction: Forward Position #: 7 Overlap #: 12 Alignment: ------AAAAAAACAAWRRACDVBBTGACCHDBGHVCTKWA GGAAGGAAGGAAGGAAGG----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Reverse Complement TWYAGVHCBDHGGTCABBVDGTMCMTTSMTTMMTTCCTTCC VRVDGGHACAVDDKGTHCTDWH TWYAGVHCBDVGGKYACHVDGTGYHYTBHTTMMTTCCTTCC Direction: Forward Position #: 9 Overlap #: 22 Alignment: TWYAGVHCBDHGGTCABBVDGTMCMTTSMTTMMTTCCTTCC --------VRVDGGHACAVDDKGTHCTDWH----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rrAGGGGGArr Reverse Complement Original Motif GGAAGGAARRAAHBAMDMCACDVHGTKYCCBHBGHVCTKWA VVAGGGGGAVV GGARGGRRARAAHBAMDMCACDVHGTKYCCBHBGHVCTKWA Direction: Forward Position #: 1 Overlap #: 11 Alignment: GGAAGGAARRAAHBAMDMCACDVHGTKYCCBHBGHVCTKWA VVAGGGGGAVV------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif GGARGGRRARAAHBAMDMCACDVHGTKYCCBHBGHVCTKWA VHRGGTCABDBTGMCCTB GGARGGRRARAAHBAMDMCACVVVGKKCMBBHBGHCCTBWA Direction: Forward Position #: 22 Overlap #: 18 Alignment: GGARGGRRARAAHBAMDMCACDVHGTKYCCBHBGHVCTKWA ---------------------VHRGGTCABDBTGMCCTB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- mkARGCCACG Combined Motif Reverse Complement Original Motif TWBAGGHCVDBBYGRYCBBBGTGYHYTBHTTMTMMCCMTCC CKAGGCCACG THBAGGCCACGBYGRYCBBBGTGYHYTBHTTMTMMCCMTCC Direction: Forward Position #: 2 Overlap #: 10 Alignment: TWBAGGHCVDBBYGRYCBBBGTGYHYTBHTTMTMMCCMTCC -CKAGGCCACG------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 60 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR4A2 NR1H2RXRA Original Motif Original Motif AAGGTCAC AAAGGTCAAAGGTCAAC AAAGGTCAMAGGTCAAC Direction: Backward Position #: 9 Overlap #: 8 Alignment: -AAGGTCAC-------- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement GTTGACCTYTGACCTTT MGGTCAGGGTGACCTRDBHV MGGTCAGGKTGACCTBTGACCTTT Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------GTTGACCTYTGACCTTT MGGTCAGGGTGACCTRDBHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif MGGTCAGGKTGACCTBTGACCTTT VHRGGTCABDBTGMCCTB MGGTCADRKKKMMCTBTGACCTBT Direction: Forward Position #: 6 Overlap #: 18 Alignment: MGGTCAGGKTGACCTBTGACCTTT -----VHRGGTCABDBTGMCCTB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif mkARGCCACG Reverse Complement Original Motif AVAGGTCABAGYRYYYMHTGACCY CKAGGCCACG MDAGGYCACRGYRYYYMHTGACCY Direction: Forward Position #: 1 Overlap #: 10 Alignment: AVAGGTCABAGYRYYYMHTGACCY CKAGGCCACG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Original Motif Original Motif MDAGGYCACRGYRYYYMHTGACCY HWDAGHACRHHVTGTHCCHVMV HWDAGHACRHHVTGTHCCHDAGGYCACRGYRYYYMHTGACCY Direction: Forward Position #: 19 Overlap #: 4 Alignment: ------------------MDAGGYCACRGYRYYYMHTGACCY HWDAGHACRHHVTGTHCCHVMV-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif HWDAGHACRHHVTGTHCCHDAGGYCACRGYRYYYMHTGACCY BTRGGDCARAGGKCA HWDAGHACRHHVTGKDCCARAGGYCACRGYRYYYMHTGACCY Direction: Forward Position #: 12 Overlap #: 15 Alignment: HWDAGHACRHHVTGTHCCHDAGGYCACRGYRYYYMHTGACCY -----------BTRGGDCARAGGKCA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ccCCAGTGCAbr Combined Motif Reverse Complement Reverse Complement MGGTCADRKKKMMCMGTGMCCTKTGGHRCAVDDKGTHCTDWH DBTGCACTGGVD MGGTCADRKKKMMCVBTGCMCTGKBBHRCAVDDKGTHCTDWH Direction: Forward Position #: 15 Overlap #: 12 Alignment: MGGTCADRKKKMMCMGTGMCCTKTGGHRCAVDDKGTHCTDWH --------------DBTGCACTGGVD---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Original Motif MGGTCADRKKKMMCVBTGCMCTGKBBHRCAVDDKGTHCTDWH TGAMCTTTGMMCYT MGGTCADRKKKMMCVBTGMMCTKTGVMVCHVDDKGTHCTDWH Direction: Forward Position #: 17 Overlap #: 14 Alignment: MGGTCADRKKKMMCVBTGCMCTGKBBHRCAVDDKGTHCTDWH ----------------TGAMCTTTGMMCYT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Original Motif HWDAGHACRHHVHGVRVCARAGYYCABVGYRYYYMHTGACCY TTCAGCACCATGGACAGCKCC HWDAGHACRBYCAGVACCADRGHYMRCDSYRYYYMHTGACCY Direction: Forward Position #: 10 Overlap #: 21 Alignment: HWDAGHACRHHVHGVRVCARAGYYCABVGYRYYYMHTGACCY ---------TTCAGCACCATGGACAGCKCC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement MGGTCADRKKKMKSHGMYKHCMDTGGTVCTGMVKGTHCTDWH VAGGCCBBGGCVBB MGGTCADRKKKMKSHBAKGCCHBKGSBVCTGMVKGTHCTDWH Direction: Forward Position #: 16 Overlap #: 14 Alignment: MGGTCADRKKKMKSHGMYKHCMDTGGTVCTGMVKGTHCTDWH ---------------VAGGCCBBGGCVBB------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 61 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 ESR1 Reverse Complement Reverse Complement MSGKKRCGCWDCABTGBBCD MGGTCAGGGTGACCTRDBHV MGGTBAVGCTKVMCTGBBMD Direction: Backward Position #: 1 Overlap #: 20 Alignment: MSGKKRCGCWDCABTGBBCD MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Reverse Complement MGGTBAVGCTKVMCTGBBMD VRVDGGHACAVDDKGTHCTDWH MGGTBAVGSDBVVSTRCHVDDKGTHCTDWH Direction: Forward Position #: 9 Overlap #: 12 Alignment: MGGTBAVGCTKVMCTGBBMD---------- --------VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement MGGTBAVGSDBVVSTRCHVDDKGTHCTDWH BAGGYCABHBTGACCKHV MGGTBVMGGDVABBBWSACBKTGTHCTDWH Direction: Forward Position #: 6 Overlap #: 18 Alignment: MGGTBAVGSDBVVSTRCHVDDKGTHCTDWH -----BAGGYCABHBTGACCKHV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Reverse Complement MGGTBVMGGDVABBBWSACBKTGTHCTDWH GGYGCTGTCCATGGTGCTGAA MGGTBVMGGDVHVCTKKMCHTKGTBCTKAH Direction: Forward Position #: 10 Overlap #: 21 Alignment: MGGTBVMGGDVABBBWSACBKTGTHCTDWH ---------GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 Combined Motif Reverse Complement Original Motif HTYAGBACYAHGRRYAGVHVHCCYBBACCY RGKTCABVVRGAGGTCA HTYAGBWCMDBGRRHRGBCAHCCYBBACCY Direction: Forward Position #: 4 Overlap #: 17 Alignment: HTYAGBACYAHGRRYAGVHVHCCYBBACCY ---RGKTCABVVRGAGGTCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Combined Motif Reverse Complement Reverse Complement MGGTBVMGGDTGVCMHMKCBDYGWBCTKAH HDAMACACAKKTKTKTHD MGGTBVMGGDHDACAHABMBBTGTBYDDAH Direction: Forward Position #: 11 Overlap #: 18 Alignment: MGGTBVMGGDTGVCMHMKCBDYGWBCTKAH ----------HDAMACACAKKTKTKTHD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Reverse Complement MGGTBVMGGDHDACAHABMBBTGTBYDDAH BGRRRGRGGRTGRTTYGGGG BGRRRGRGGRTGGTYHGGGGHDACAHABMBBTGTBYDDAH Direction: Forward Position #: 11 Overlap #: 10 Alignment: ----------MGGTBVMGGDHDACAHABMBBTGTBYDDAH BGRRRGRGGRTGRTTYGGGG-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement BGRRRGRGGRTGGTYHGGGGHDACAHABMBBTGTBYDDAH TGRCCTKTGHCCKAB BGRRRGRGGRTGGTYHGGGGHDACAYVVCCTTKDBCHKAV Direction: Forward Position #: 26 Overlap #: 15 Alignment: BGRRRGRGGRTGGTYHGGGGHDACAHABMBBTGTBYDDAH -------------------------TGRCCTKTGHCCKAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Reverse Complement Original Motif VTYDGBDRAAGGBVMTGTHHCCCCHMACCAMCCMCMMMCB SSCGCCSCCGCCCSS VTYDGBDRAAGGBVMTGTHHCCCCHVVCSHCCCCVCCCSB Direction: Forward Position #: 26 Overlap #: 15 Alignment: VTYDGBDRAAGGBVMTGTHHCCCCHMACCAMCCMCMMMCB -------------------------SSCGCCSCCGCCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Reverse Complement VTYDGBDRAAGGBVMTGTHHCCCCHVVCSHCCCCVCCCSB DVTGCATGCATGBH DHTGSDTGMAKGBVMTGTHHCCCCHVVCSHCCCCVCCCSB Direction: Forward Position #: 1 Overlap #: 14 Alignment: VTYDGBDRAAGGBVMTGTHHCCCCHVVCSHCCCCVCCCSB DVTGCATGCATGBH-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 62 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RORA_1 ESR1 Reverse Complement Reverse Complement TGACCTDVWT MGGTCAGGGTGACCTRDBHV MGGTCAGGGTGACCTDDDHV Direction: Backward Position #: 2 Overlap #: 10 Alignment: ---------TGACCTDVWT- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRAVDR Original Motif Original Motif MGGTCAGGGTGACCTDDDHV GGGTCAWBGRGTTCA RGGTCADBGDGWYCDDDDHV Direction: Forward Position #: 1 Overlap #: 15 Alignment: MGGTCAGGGTGACCTDDDHV GGGTCAWBGRGTTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Original Motif RGGTCADBGDGWYCDDDDHV AAAGGTCAAAGGTCAAC AAAGGTCAAAGGTCAABGDGWYCDDDDHV Direction: Forward Position #: 10 Overlap #: 8 Alignment: ---------RGGTCADBGDGWYCDDDDHV AAAGGTCAAAGGTCAAC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 Combined Motif Reverse Complement Original Motif VHDHHDGKWCDCBTTGACCTTTGACCTTT RGKTCABVVRGAGGTCA VHDHHRGKTCAHVDWGASSTYWGACCTTT Direction: Forward Position #: 6 Overlap #: 17 Alignment: VHDHHDGKWCDCBTTGACCTTTGACCTTT -----RGKTCABVVRGAGGTCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Reverse Complement VHDHHRGKTCAHVDWGASSTYWGACCTTT AKGYYCAAAGRTCA AKGBHCAAAGGTCAHVDWGASSTYWGACCTTT Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---VHDHHRGKTCAHVDWGASSTYWGACCTTT AKGYYCAAAGRTCA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif AKGBHCAAAGGTCAHVDWGASSTYWGACCTTT BTRGGDCARAGGKCA AKGBHBHARGDYMAVGGTSASSTYWGACCTTT Direction: Forward Position #: 6 Overlap #: 15 Alignment: AKGBHCAAAGGTCAHVDWGASSTYWGACCTTT -----BTRGGDCARAGGKCA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Original Motif AKGBHBHARGDYMAVGGTSASSTYWGACCTTT TTCAGCACCATGGACAGCKCC AKGBBBCAGSACCAHGGWSAGCKYHGACCTTT Direction: Forward Position #: 5 Overlap #: 21 Alignment: AKGBHBHARGDYMAVGGTSASSTYWGACCTTT ----TTCAGCACCATGGACAGCKCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Original Motif AAAGGTCDKRGCTSWCCHTGGTSCTGVVBCYT RGGBCAAAGKYCA AAAGGTCDKRGVKGBCMAWGKTCMTGVVBCYT Direction: Forward Position #: 12 Overlap #: 13 Alignment: AAAGGTCDKRGCTSWCCHTGGTSCTGVVBCYT -----------RGGBCAAAGKYCA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Reverse Complement AAAGGTCDKRGVKGBCMAWGKTCMTGVVBCYT VRVDGGHACAVDDKGTHCTDWH AAAGGTCDKRGVKGBCMADGBBSGTRCAVBHTGTHCTDWH Direction: Forward Position #: 19 Overlap #: 14 Alignment: AAAGGTCDKRGVKGBCMAWGKTCMTGVVBCYT-------- ------------------VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ccCCAGTGCAbr Combined Motif Original Motif Original Motif AAAGGTCDKRGVKGBCMADGBBSGTRCAVBHTGTHCTDWH HVCCAGTGCABD AAAGGTCDKRGVBBCCARTGCABVTRCAVBHTGTHCTDWH Direction: Forward Position #: 13 Overlap #: 12 Alignment: AAAGGTCDKRGVKGBCMADGBBSGTRCAVBHTGTHCTDWH ------------HVCCAGTGCABD---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 63 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 ESR1 Original Motif Reverse Complement RGKTCABVVRGAGGTCA MGGTCAGGGTGACCTRDBHV MGGDSRKSRTGRMCDGGBCA Direction: Backward Position #: 1 Overlap #: 17 Alignment: ---RGKTCABVVRGAGGTCA MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Original Motif TGVCCDGRKCAKSRKSDCCY VHRGGTCABDBTGMCCTB BDRBSTCABVDTGAHCHCCY Direction: Forward Position #: 1 Overlap #: 18 Alignment: TGVCCDGRKCAKSRKSDCCY VHRGGTCABDBTGMCCTB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif MGGHGDTCADVBTGASBKHV DGVBCABTGDWGCGKRRCSR MGGHGDTCADGBKSASBKHDGCGKRRCSR Direction: Forward Position #: 10 Overlap #: 11 Alignment: MGGHGDTCADVBTGASBKHV--------- ---------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Original Motif MSGKKRCGCDHYVSTSRBCDTGAHCHCCY HWDAGHACRHHVTGTHCCHVMV MSGKKRCGCDHYVSHDDVGHWCAHCBYSTHCCHVMV Direction: Forward Position #: 15 Overlap #: 15 Alignment: MSGKKRCGCDHYVSTSRBCDTGAHCHCCY------- --------------HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement MSGKKRCGCDHYVSHDDVGHWCAHCBYSTHCCHVMV TGRCCTKTGHCCKAB MSGKKRCGCDHYVSHDDVGHTSACCTBKBHCCDVVV Direction: Forward Position #: 21 Overlap #: 15 Alignment: MSGKKRCGCDHYVSHDDVGHWCAHCBYSTHCCHVMV --------------------TGRCCTKTGHCCKAB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RXRAVDR Reverse Complement Original Motif VVBDGGDVRVAGGTSAHCBDHHSBKHDGCGKRYCSR GGGTCAWBGRGTTCA GGGTCRDBGRGTDCAAGGTSAHCBDHHSBKHDGCGKRYCSR Direction: Forward Position #: 6 Overlap #: 10 Alignment: -----VVBDGGDVRVAGGTSAHCBDHHSBKHDGCGKRYCSR GGGTCAWBGRGTTCA-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Reverse Complement Original Motif MSGKKRCGCDHYVSHDDVGHTSACCTTGDACMCBDKGACCC TGAMCTTTGMMCYT MSGKKRCGCDHYVKGAMCBTTGAMCHTGDACMCBDKGACCC Direction: Forward Position #: 14 Overlap #: 14 Alignment: MSGKKRCGCDHYVSHDDVGHTSACCTTGDACMCBDKGACCC -------------TGAMCTTTGMMCYT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Reverse Complement MSGKKRCGCDHYVKGAMCBTTGAMCHTGDACMCBDKGACCC CCCCCTTGGGCCCC MSGKKRCGCDHYVKGAMCBTYSCCCYTGDRCCCCDKGACCC Direction: Forward Position #: 21 Overlap #: 14 Alignment: MSGKKRCGCDHYVKGAMCBTTGAMCHTGDACMCBDKGACCC --------------------CCCCCTTGGGCCCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Reverse Complement MSGKKRCGCDHYVKGAMCBTYSCCCYTGDRCCCCDKGACCC TGMYCTTTGBCCK MSGKKRCGCDHYVTGAHCTTTSVCCBTGDRCCCCDKGACCC Direction: Forward Position #: 14 Overlap #: 13 Alignment: MSGKKRCGCDHYVKGAMCBTYSCCCYTGDRCCCCDKGACCC -------------TGMYCTTTGBCCK--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Reverse Complement GGGTCRDGGGGMHCAVGGVSAAAGDTCABKHDGCGKRYCSR BGRRRGRGGRTGRTTYGGGG GGGTCRDGGGGMHCAHGGVVRRRGRTSRYTHGGSGKRYCSR Direction: Forward Position #: 16 Overlap #: 20 Alignment: GGGTCRDGGGGMHCAVGGVSAAAGDTCABKHDGCGKRYCSR ---------------BGRRRGRGGRTGRTTYGGGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 64 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Ar Original Motif Original Motif CCAGYYHVADCCRG HWDAGHACRHHVTGTHCCHVMV HWDAGHMCAGYBYGWDCCDGMV Direction: Backward Position #: 3 Overlap #: 14 Alignment: ------CCAGYYHVADCCRG-- HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif VRCDGGDWCMBKCTGRHCTDWH VDBHMAGGTCACCCTGACCY VRCDGGDWCMVDBBGRDSTHAHCCTGACCY Direction: Forward Position #: 11 Overlap #: 12 Alignment: VRCDGGDWCMBKCTGRHCTDWH-------- ----------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif MGGTCAGGDTDASHKCVBHVYGWDCCDGMV BBVGCCBVGGCCTV MGGTCAGGDTDASHKCVBHBBGDVCBVGVCCTV Direction: Forward Position #: 20 Overlap #: 11 Alignment: MGGTCAGGDTDASHKCVBHVYGWDCCDGMV--- -------------------BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Reverse Complement Reverse Complement VAGGVCBBGVHCBBDBBGRDSTHAHCCTGACCY BGRRRGRGGRTGRTTYGGGG BGRRRGRGGRTGRTTYGRGGVCBBGVHCBBDBBGRDSTHAHCCTGACCY Direction: Forward Position #: 17 Overlap #: 4 Alignment: ----------------VAGGVCBBGVHCBBDBBGRDSTHAHCCTGACCY BGRRRGRGGRTGRTTYGGGG----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Reverse Complement Original Motif MGGTCAGGDTDASHKCVBHBBGDVCBVGVCCKCMAAMCAMCCMCMMMCB SSCGCCSCCGCCCSS MGGTCAGGDTDASHKCVBHBBGDVCBVGVCCBCCRMCCMCVCCCHVMCB Direction: Forward Position #: 32 Overlap #: 15 Alignment: MGGTCAGGDTDASHKCVBHBBGDVCBVGVCCKCMAAMCAMCCMCMMMCB -------------------------------SSCGCCSCCGCCCSS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Reverse Complement MGGTCAGGDTDASHKCVBHBBGDVCBVGVCCBCCRMCCMCVCCCHVMCB CCCCCTTGGGCCCC MGGTCAGGDTDASHKCVBHCCCCCYHVGGCCBCCRMCCMCVCCCHVMCB Direction: Forward Position #: 20 Overlap #: 14 Alignment: MGGTCAGGDTDASHKCVBHBBGDVCBVGVCCBCCRMCCMCVCCCHVMCB -------------------CCCCCTTGGGCCCC---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif MGGTCAGGDTDASHKCVBHCCCCCYHVGGCCBCCRMCCMCVCCCHVMCB VHRGGTCABDBTGMCCTB MGGTCAGGDTDASHKCVBHCCCCCYHVGGCCBHMRSYCACVVYSHCCYB Direction: Forward Position #: 32 Overlap #: 18 Alignment: MGGTCAGGDTDASHKCVBHCCCCCYHVGGCCBCCRMCCMCVCCCHVMCB -------------------------------VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif MGGTCAGGDTDASHKCVBHCCCCCYHVGGCCBHMRSYCACVVYSHCCYB BTRGGDCARAGGKCA MGGTCAGGDTDASHKCVBHCCCCCYHVGGCCBHRGGBCAVRGBBCMCYB Direction: Forward Position #: 32 Overlap #: 15 Alignment: MGGTCAGGDTDASHKCVBHCCCCCYHVGGCCBHMRSYCACVVYSHCCYB -------------------------------BTRGGDCARAGGKCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif BKGYGBBCKBTGVCCKHBGGCCVHKGGGGGDBBGRDSTHAHCCTGACCY DGVBCABTGDWGCGKRRCSR BKGYGBBCKBTGVCCKHBGGCCVHKGGGGGDVBBVDSTBAHSCKGACCBR Direction: Forward Position #: 31 Overlap #: 19 Alignment: BKGYGBBCKBTGVCCKHBGGCCVHKGGGGGDBBGRDSTHAHCCTGACCY- ------------------------------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 Combined Motif Reverse Complement Original Motif MBGGTCRGSHTBASDBBVVHCCCCCYHVGGCCBHRGGBCAVRGBBCMCYB RGKTCABVVRGAGGTCA MBGGTCRGSHTBASDBBVVHCCCCCYHVGGCCBHRGGTCAVVGDVMVBTBA Direction: Forward Position #: 35 Overlap #: 16 Alignment: MBGGTCRGSHTBASDBBVVHCCCCCYHVGGCCBHRGGBCAVRGBBCMCYB- ----------------------------------RGKTCABVVRGAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 65 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGrGCGss ssCGssCGss Reverse Complement Reverse Complement VBCGCMCGSV VSCGSSCGSB VBCGSVCGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: VBCGCMCGSV VSCGSSCGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGGsYCGss Reverse Complement Reverse Complement VSCGVSCGBV VSCGGSCCGSB VSCGGSCSGSB Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCGVSCGBV- VSCGGSCCGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCrCYyYCGss Original Motif Reverse Complement VSCGGSCSGSB BBCGGKGGMGBB VSCGGGSGSGBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: VSCGGSCSGSB- BBCGGKGGMGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGsCwsCss Combined Motif Original Motif Original Motif VSCGGGSGSGBB BBCGSCWSCBB BVCGGCHGCGBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: VSCGGGSGSGBB BBCGSCWSCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Original Motif Reverse Complement BVCGGCHGCGBB BBCGCCCSGCVV BBCGCCHSSCBV Direction: Forward Position #: 1 Overlap #: 12 Alignment: BVCGGCHGCGBB BBCGCCCSGCVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCksCGss Combined Motif Original Motif Original Motif BBCGCCHSSCBV VVCGCKSCGBB VVCGCBSCGSBV Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBCGCCHSSCBV VVCGCKSCGBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGsCTCss Original Motif Original Motif VVCGCBSCGSBV VVCGSCTCBB VVCGCCTCGSBV Direction: Forward Position #: 1 Overlap #: 10 Alignment: VVCGCBSCGSBV VVCGSCTCBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Reverse Complement Reverse Complement VBSCGAGGCGVV SSGGGCGGSGGCGSS SSGGGCGGSGSCGSGAGGCGVV Direction: Forward Position #: 11 Overlap #: 5 Alignment: ----------VBSCGAGGCGVV SSGGGCGGSGGCGSS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCKCwsCGss Combined Motif Reverse Complement Original Motif VVCGCCTCSCGSCSCCGCCCSS BVCGCWSCGBV VVCGCCBCGCDSCGCCGCCCSS Direction: Forward Position #: 6 Overlap #: 11 Alignment: VVCGCCTCSCGSCSCCGCCCSS -----BVCGCWSCGBV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss Combined Motif Original Motif Reverse Complement VVCGCCBCGCDSCGCCGCCCSS SSSGCSSCGSSS VVCGCSBSGCBSCGSCGCCCSS Direction: Forward Position #: 6 Overlap #: 12 Alignment: VVCGCCBCGCDSCGCCGCCCSS -----SSSGCSSCGSSS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 66 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGssCGss ssCGrGCGss Reverse Complement Reverse Complement VSCGSSCGSB VBCGCMCGSV VBCGSVCGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCGSSCGSB VBCGCMCGSV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGGsYCGss Reverse Complement Reverse Complement VSCGVSCGBV VSCGGSCCGSB VSCGGSCSGSB Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCGVSCGBV- VSCGGSCCGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sssCGssGCsss Reverse Complement Original Motif BSCSGSCCGSV SSSCGSSGCSSS SSSCGSSGCSSSGSCCGSV Direction: Forward Position #: 9 Overlap #: 4 Alignment: --------BSCSGSCCGSV SSSCGSSGCSSS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGsCwsCss Combined Motif Original Motif Original Motif SSSCGSSGCSSSGSCCGSV BBCGSCWSCBB SSSCGSCGSCHSSSBCGSV Direction: Forward Position #: 5 Overlap #: 11 Alignment: SSSCGSSGCSSSGSCCGSV ----BBCGSCWSCBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Reverse Complement Reverse Complement VSCGBSSSHGSCGSCGSSS BBCGGKGGMGBB VSCGBCGSDGGCGSSGSSS Direction: Forward Position #: 4 Overlap #: 12 Alignment: VSCGBSSSHGSCGSCGSSS ---BBCGGKGGMGBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGsCTCss Combined Motif Reverse Complement Original Motif SSSCSSCGCCHSCGBCGSV VVCGSCTCBB SSSCBBCGCCTCSSBCGSV Direction: Forward Position #: 5 Overlap #: 10 Alignment: SSSCSSCGCCHSCGBCGSV ----VVCGSCTCBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCksCGss Combined Motif Reverse Complement Original Motif VSCGBSSGAGGCGBBGSSS VVCGCKSCGBB VSCGBSCGMGSCGBBGSSS Direction: Forward Position #: 5 Overlap #: 11 Alignment: VSCGBSSGAGGCGBBGSSS ----VVCGCKSCGBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Reverse Complement VSCGBSCGMGSCGBBGSSS SSGGGCGGSGGCGSS VSCGGGSSSGSSGCGGSSS Direction: Forward Position #: 3 Overlap #: 15 Alignment: VSCGBSCGMGSCGBBGSSS --SSGGGCGGSGGCGSS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Original Motif Original Motif VSCGGGSSSGSSGCGGSSS VVGCSGGGCGBB VSCSVGSSGGGCGVGGSSS Direction: Forward Position #: 4 Overlap #: 12 Alignment: VSCGGGSSSGSSGCGGSSS ---VVGCSGGGCGBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Combined Motif Original Motif Reverse Complement VSCSVGSSGGGCGVGGSSS GCCACGTGSD VSCSVGCCRSGYGSVGSSS Direction: Forward Position #: 6 Overlap #: 10 Alignment: VSCSVGSSGGGCGVGGSSS -----GCCACGTGSD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 67 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss ssCrCYyYCGss Original Motif Reverse Complement VVGCSGGGCGBB BBCGGKGGMGBB VVSSGGGGCGBB Direction: Backward Position #: 1 Overlap #: 12 Alignment: VVGCSGGGCGBB BBCGGKGGMGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss Combined Motif Original Motif Original Motif VVSSGGGGCGBB SSSCGSSGCSSS VSSCGSSGCGBS Direction: Forward Position #: 1 Overlap #: 12 Alignment: VVSSGGGGCGBB SSSCGSSGCSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCTswGCCms Original Motif Original Motif VSSCGSSGCGBS VBGCTSAGCCHB VBGCKSDGCSVB Direction: Forward Position #: 1 Overlap #: 12 Alignment: VSSCGSSGCGBS VBGCTSAGCCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Reverse Complement BVSGCHSRGCBV VAGGCCBBGGCVBB VAGGCCBBGGBVSGCHSRGCBV Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------BVSGCHSRGCBV VAGGCCBBGGCVBB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Original Motif VAGGCCBBGGBVSGCHSRGCBV SSCGCCSCCGCCCSS VAGGCCBCSSCCGSCCSVGCBV Direction: Forward Position #: 4 Overlap #: 15 Alignment: VAGGCCBBGGBVSGCHSRGCBV ---SSCGCCSCCGCCCSS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement VAGGCCBCSSCCGSCCSVGCBV MSGKKRCGCWDCABTGBBCD VAGGCCBCSSCCSGCBVMGCDBCABTGBBCD Direction: Forward Position #: 12 Overlap #: 11 Alignment: VAGGCCBCSSCCGSCCSVGCBV--------- -----------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ccCCAGTGCAbr Combined Motif Reverse Complement Original Motif HGVBCABTGVDGCRVBGCSGGSSGBGGCCTV HVCCAGTGCABD HGVBCABTGVHSCAGTGCAVDSSGBGGCCTV Direction: Forward Position #: 10 Overlap #: 12 Alignment: HGVBCABTGVDGCRVBGCSGGSSGBGGCCTV ---------HVCCAGTGCABD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif VAGGCCBCSSHVTGCACTGSHBCABTGBBCD VDBHMAGGTCACCCTGACCY VAGGCCBCSSHVTGCACBGSHHVRGTSHBCBTGACCY Direction: Forward Position #: 18 Overlap #: 14 Alignment: VAGGCCBCSSHVTGCACTGSHBCABTGBBCD------ -----------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Original Motif VAGGCCBCSSHVTGCACBGSHHVRGTSHBCBTGACCY CCCCMAAMCAMCCMCMMMCV VAGGCCVCCCMMHVCACCVVCHMVSHSHBCBTGACCY Direction: Forward Position #: 7 Overlap #: 20 Alignment: VAGGCCBCSSHVTGCACBGSHHVRGTSHBCBTGACCY ------CCCCMAAMCAMCCMCMMMCV----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCwGGCCwGCss Combined Motif Reverse Complement Reverse Complement MGGTCABGBHSHSBRDGVVGGTGVHYYGGGVGGCCTV BBGCTGGCCWGBB MGGTCABGBHSHVBGCDGGSSWGVHYYGGGVGGCCTV Direction: Forward Position #: 13 Overlap #: 13 Alignment: MGGTCABGBHSHSBRDGVVGGTGVHYYGGGVGGCCTV ------------BBGCTGGCCWGBB------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 68 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dwCTTTTCwy wyATTTTAww Reverse Complement Reverse Complement DHGAAAAGHD DDTAAAATHD DHKAAAAKHD Direction: Backward Position #: 1 Overlap #: 10 Alignment: DHGAAAAGHD DDTAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAwAAww Original Motif Original Motif DHKAAAAKHD DDTAAWAAHH DHTAAAADHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHKAAAAKHD DDTAAWAAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif DHTAAAADHD WWAAAAAAWH DWWAAAAAHH Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHTAAAADHD WWAAAAAAWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Reverse Complement Reverse Complement HHTTTTTWWD HHTWTTTADD HHTTTTTADD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHTTTTTWWD HHTWTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Reverse Complement Reverse Complement DDTAAAAAHH DDTAAAAATHD DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAAHH- DDTAAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 69 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- aaACAAAACaa aaCAAAAACaa Reverse Complement Reverse Complement TTGTTTTGTTT HTGTTTTTGHH TTGTTTTKKTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTGTTTTGTTT HTGTTTTTGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Reverse Complement TTGTTTTKKTT TTTTTTTTTTT TTKTTTTTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTGTTTTKKTT TTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Reverse Complement Reverse Complement AAAAAAAAYAA AAAAAAACAAARRA AAAAAAACAAAARAAAAYAA Direction: Forward Position #: 10 Overlap #: 5 Alignment: ---------AAAAAAAAYAA AAAAAAACAAARRA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wtATTTTTAww Combined Motif Reverse Complement Original Motif TTKTTTTKTTTTGTTTTTTT DHATTTTTADD TTKTTTWTTTTTRWTTTTTT Direction: Forward Position #: 5 Overlap #: 11 Alignment: TTKTTTTKTTTTGTTTTTTT ----DHATTTTTADD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rmACAGCAGsr Original Motif Reverse Complement TTKTTTWTTTTTRWTTTTTT DVCTGCTGTVB DVCTGYTGTDBWTTTTTRWTTTTTT Direction: Forward Position #: 6 Overlap #: 6 Alignment: -----TTKTTTWTTTTTRWTTTTTT DVCTGCTGTVB-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Reverse Complement AAAAAAWKAAAAAWVDACAKCAGVD BGRRRGRGGRTGRTTYGGGG AAAAAAWKAAAAAWVDACAKCAGVDRGRGGRTGRTTYGGGG Direction: Forward Position #: 22 Overlap #: 4 Alignment: AAAAAAWKAAAAAWVDACAKCAGVD---------------- ---------------------BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tyTCTkTkTCyy Combined Motif Reverse Complement Original Motif CCCCMAAMCAMCCMCMHVCTGYTGTDBWTTTTTRWTTTTTT BBTCTKTKTCHB CCCCMAAMCAMCCMCMHVCHKCTKTKTMTTTTTRWTTTTTT Direction: Forward Position #: 19 Overlap #: 12 Alignment: CCCCMAAMCAMCCMCMHVCTGYTGTDBWTTTTTRWTTTTTT ------------------BBTCTKTKTCHB----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yayAyAyACATrya Combined Motif Original Motif Reverse Complement CCCCMAAMCAMCCMCMHVCHKCTKTKTMTTTTTRWTTTTTT DHKATGTKTKTGTD CCCCMAAMCAMCCMCMHVCHKCTRTKTBTKTKTDWTTTTTT Direction: Forward Position #: 21 Overlap #: 14 Alignment: CCCCMAAMCAMCCMCMHVCHKCTKTKTMTTTTTRWTTTTTT --------------------DHKATGTKTKTGTD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Combined Motif Original Motif Reverse Complement CCCCMAAMCAMCCMCMHVCHKCTRTKTBTKTKTDWTTTTTT HDAMACACAKKTKTKTHD CCCCMAAMCAMCCMBMMACABMTDTKTKTDTKTDWTTTTTT Direction: Forward Position #: 14 Overlap #: 18 Alignment: CCCCMAAMCAMCCMCMHVCHKCTRTKTBTKTKTDWTTTTTT -------------HDAMACACAKKTKTKTHD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACACACACACA Combined Motif Original Motif Reverse Complement CCCCMAAMCAMCCMBMMACABMTDTKTKTDTKTDWTTTTTT TGTGTGTGTGTG CCCCMAAMCAMCCMBMMACABMTDTGTGTGTKTGTDTTTTT Direction: Forward Position #: 25 Overlap #: 12 Alignment: CCCCMAAMCAMCCMBMMACABMTDTKTKTDTKTDWTTTTTT ------------------------TGTGTGTGTGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 70 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- mkARGCCACG ESR2 Reverse Complement Reverse Complement CGTGGCCTYG BAGGYCABHBTGACCKHV BAGGYCABCGTGRCCTYG Direction: Forward Position #: 9 Overlap #: 10 Alignment: --------CGTGGCCTYG BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement CMAGGMCACGBTGMCCTB MGGTCAGGGTGACCTRDBHV MGGTCAGGGTGACCTRVVVGGMCACGBTGMCCTB Direction: Forward Position #: 17 Overlap #: 4 Alignment: ----------------CMAGGMCACGBTGMCCTB MGGTCAGGGTGACCTRDBHV-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif BAGGYCABCGTGRCCBVVMAGGTCACCCTGACCY AAAGGTCAAAGGTCAAC AAAGGTCAAAGGTCAHCGTGRCCBVVMAGGTCACCCTGACCY Direction: Forward Position #: 9 Overlap #: 9 Alignment: --------BAGGYCABCGTGRCCBVVMAGGTCACCCTGACCY AAAGGTCAAAGGTCAAC------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement AAAGGTCAAAGGTCAHCGTGRCCBVVMAGGTCACCCTGACCY TGRCCTKTGHCCKAB AAAGGTCAAAGKKMMMYKTGVCCKVVMAGGTCACCCTGACCY Direction: Forward Position #: 12 Overlap #: 15 Alignment: AAAGGTCAAAGGTCAHCGTGRCCBVVMAGGTCACCCTGACCY -----------TGRCCTKTGHCCKAB---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Reverse Complement MGGTCAGGGTGACCTRVBRGGVCAYMRYRRYCTTTGACCTTT VRVDGGHACAVDDKGTHCTDWH MGGTCAGGGTGACCDRVBRGDACABVDTGDYCTTTGACCTTT Direction: Forward Position #: 15 Overlap #: 22 Alignment: MGGTCAGGGTGACCTRVBRGGVCAYMRYRRYCTTTGACCTTT --------------VRVDGGHACAVDDKGTHCTDWH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Original Motif AAAGGTCAAAGMDCAHBBTGTHCMVVMDGGTCACCCTGACCY GGGGCCCAAGGGGG GGGGCCMAAGGKSRAAGMDCAHBBTGTHCMVVMDGGTCACCCTGACCY Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------AAAGGTCAAAGMDCAHBBTGTHCMVVMDGGTCACCCTGACCY GGGGCCCAAGGGGG---------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Reverse Complement Reverse Complement MGGTCAGGGTGACCDRVBRGDACABVDTGDYCTTMSYCCTTYGGCCCC BGRRRGRGGRTGRTTYGGGG BVGGDSAGGGTGRYYYGGGGGDACABVDTGDYCTTMSYCCTTYGGCCCC Direction: Forward Position #: 2 Overlap #: 19 Alignment: -MGGTCAGGGTGACCDRVBRGDACABVDTGDYCTTMSYCCTTYGGCCCC BGRRRGRGGRTGRTTYGGGG----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sgCTGGCCAGcs Reverse Complement Reverse Complement GGGGCCMAAGGKSRAAGMDCAHBBTGTHCCCCCMKKKCACCCTSDCCVB VVCTGGCCAGBB VVSKGGCCARVGGKSRAAGMDCAHBBTGTHCCCCCMKKKCACCCTSDCCVB Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GGGGCCMAAGGKSRAAGMDCAHBBTGTHCCCCCMKKKCACCCTSDCCVB VVCTGGCCAGBB--------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCwGGCCwGCss Combined Motif Original Motif Original Motif VVSKGGCCARVGGKSRAAGMDCAHBBTGTHCCCCCMKKKCACCCTSDCCVB BBCWGGCCAGCBB VVSKGGCCARVGGKSRAAGMDCAHBCTGKCCMSCCVKKKCACCCTSDCCVB Direction: Forward Position #: 24 Overlap #: 13 Alignment: VVSKGGCCARVGGKSRAAGMDCAHBBTGTHCCCCCMKKKCACCCTSDCCVB -----------------------BBCWGGCCAGCBB--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Reverse Complement VVSKGGCCARVGGKSRAAGMDCAHBCTGKCCMSCCVKKKCACCCTSDCCVB GGYGCTGTCCATGGTGCTGAA VVSKGGCCARVGGKSRAAGMDSVHBCTGTCCMBSGTKSTSAVCCTSDCCVB Direction: Forward Position #: 22 Overlap #: 21 Alignment: VVSKGGCCARVGGKSRAAGMDCAHBCTGKCCMSCCVKKKCACCCTSDCCVB ---------------------GGYGCTGTCCATGGTGCTGAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 71 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wyATTTTAww wtATTTTTAww Original Motif Original Motif DHATTTTADD DHATTTTTADD DHATTTTWADD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHATTTTADD- DHATTTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAwAAww Reverse Complement Original Motif DDTWAAAATHD DDTAAWAAHH DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTWAAAATHD DDTAAWAAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Original Motif Original Motif DDTAAAAATHD DDTAAAWAHH DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAATHD DDTAAAWAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif DDTAAAAATHD WWAAAAAAWH DWWAAAAAWHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAATHD WWAAAAAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dwCTTTTCwy Reverse Complement Original Motif DHWTTTTTWWD DHCTTTTCHH DHCTTTTYWHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHWTTTTTWWD DHCTTTTCHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Reverse Complement Original Motif DHWKAAAAGHD HHTTTWAAADD DHTTWAAAAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHWKAAAAGHD HHTTTWAAADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Reverse Complement Reverse Complement DHTTTTWAAHD DBTATGTAHH DHTWTKTAHHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHTTTTWAAHD DBTATGTAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Original Motif Reverse Complement DHTWTKTAHHD HTGTTTTTGHH HHKTTTTWGHH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHTWTKTAHHD HTGTTTTTGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Reverse Complement Original Motif HHCWAAAAYHH AAACAAAACAA HHAMAAAACHH Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHCWAAAAYHH AAACAAAACAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Reverse Complement HHGTTTTRTHH TTTTTTTTTTT TTKTTTTTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHGTTTTRTHH TTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 72 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCKCwsCGss ssCGCksCGss Original Motif Original Motif BVCGCWSCGBV VVCGCKSCGBB BVCGCTSCGBB Direction: Backward Position #: 1 Overlap #: 11 Alignment: BVCGCWSCGBV VVCGCKSCGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGMsGRGCGss Original Motif Reverse Complement BVCGCTSCGBB BBCGCCCSGCVV BVCGCHCCGCVV Direction: Forward Position #: 1 Overlap #: 11 Alignment: BVCGCTSCGBB- BBCGCCCSGCVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss Combined Motif Original Motif Reverse Complement BVCGCHCCGCVV SSSGCSSCGSSS BBCGCBSCGCVV Direction: Forward Position #: 1 Overlap #: 12 Alignment: BVCGCHCCGCVV SSSGCSSCGSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCTswGCCms Original Motif Reverse Complement BBCGCBSCGCVV BDGGCTSAGCBV BVSGCBSMGCBV Direction: Forward Position #: 1 Overlap #: 12 Alignment: BBCGCBSCGCVV BDGGCTSAGCBV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGGsYCGss Original Motif Original Motif BVSGCBSMGCBV BSCGGSCCGSV BBCGSBCCGCVV Direction: Forward Position #: 1 Overlap #: 11 Alignment: BVSGCBSMGCBV BSCGGSCCGSV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Reverse Complement VVGCGGBSCGBB MSGKKRCGCWDCABTGBBCD MSGKKRCGCWDCAVBGCDSBSCGBB Direction: Forward Position #: 14 Overlap #: 7 Alignment: -------------VVGCGGBSCGBB MSGKKRCGCWDCABTGBBCD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Original Motif Original Motif MSGKKRCGCWDCAVBGCDSBSCGBB BBCRCCYCCGBB MSGKKRCVCDCCMCCGCVSBSCGBB Direction: Forward Position #: 7 Overlap #: 12 Alignment: MSGKKRCGCWDCAVBGCDSBSCGBB ------BBCRCCYCCGBB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Original Motif MSGKKRCVCDCCMCCGCVSBSCGBB SSCGCCSCCGCCCSS MSGKKRCVCDCCMCCSCGCCSCSVCCCSS Direction: Forward Position #: 15 Overlap #: 11 Alignment: MSGKKRCVCDCCMCCGCVSBSCGBB---- --------------SSCGCCSCCGCCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ccCCAGTGCAbr Combined Motif Original Motif Original Motif MSGKKRCVCDCCMCCSCGCCSCSVCCCSS HVCCAGTGCABD MSGKKRCVCDCCAGYGCRBVSCSVCCCSS Direction: Forward Position #: 9 Overlap #: 12 Alignment: MSGKKRCVCDCCMCCSCGCCSCSVCCCSS --------HVCCAGTGCABD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGsCwsCss Combined Motif Reverse Complement Reverse Complement SSGGGVSGSVBKGCMCTGGHGVGKRYCSR BBGSWGSCGBB SSGGGVSGSBBGSHGSYGGVGVGKRYCSR Direction: Forward Position #: 10 Overlap #: 11 Alignment: SSGGGVSGSVBKGCMCTGGHGVGKRYCSR ---------BBGSWGSCGBB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 73 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGsCTCss ssCGsCwsCss Reverse Complement Reverse Complement BBGAGSCGVV BBGSWGSCGBB BBGGAGSCGVB Direction: Forward Position #: 2 Overlap #: 10 Alignment: -BBGAGSCGVV BBGSWGSCGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sssCGssGCsss Original Motif Original Motif BBGGAGSCGVB SSSCGSSGCSSS SSSCGSSGCSGSAGSCGVB Direction: Forward Position #: 9 Overlap #: 4 Alignment: --------BBGGAGSCGVB SSSCGSSGCSSS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCksCGss Combined Motif Original Motif Original Motif SSSCGSSGCSGSAGSCGVB VVCGCKSCGBB SSSCGSCGCBSCRGSCGVB Direction: Forward Position #: 5 Overlap #: 11 Alignment: SSSCGSSGCSGSAGSCGVB ----VVCGCKSCGBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGGsYCGss Combined Motif Original Motif Reverse Complement SSSCGSCGCBSCRGSCGVB VSCGGSCCGSB SSSCSSCGSSCCGSSCGVB Direction: Forward Position #: 5 Overlap #: 11 Alignment: SSSCGSCGCBSCRGSCGVB ----VSCGGSCCGSB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Original Motif SSSCSSCGSSCCGSSCGVB SSCGCCSCCGCCCSS SSSCGSCGCCSCSSSCGVB Direction: Forward Position #: 2 Overlap #: 15 Alignment: SSSCSSCGSSCCGSSCGVB -SSCGCCSCCGCCCSS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGssCGss Combined Motif Original Motif Reverse Complement SSSCGSCGCCSCSSSCGVB VSCGSSCGSB SSSCSSCGSSCSSSSCGVB Direction: Forward Position #: 5 Overlap #: 10 Alignment: SSSCGSCGCCSCSSSCGVB ----VSCGSSCGSB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGrGCGss Combined Motif Original Motif Reverse Complement SSSCSSCGSSCSSSSCGVB VBCGCMCGSV SSSCVSCGCCCGSSSCGVB Direction: Forward Position #: 5 Overlap #: 10 Alignment: SSSCSSCGSSCSSSSCGVB ----VBCGCMCGSV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Reverse Complement Original Motif BVCGSSSCGGGCGSVGSSS VVGCSGGGCGBB BVCGVGCSGGGCGBVGSSS Direction: Forward Position #: 4 Overlap #: 12 Alignment: BVCGSSSCGGGCGSVGSSS ---VVGCSGGGCGBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCKCwsCGss Combined Motif Original Motif Reverse Complement BVCGVGCSGGGCGBVGSSS VBCGSWGCGVB BVCGVGCGGDGCGVBGSSS Direction: Forward Position #: 5 Overlap #: 11 Alignment: BVCGVGCSGGGCGBVGSSS ----VBCGSWGCGVB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Original Motif Reverse Complement BVCGVGCGGDGCGVBGSSS BBCGGKGGMGBB BVCVVCSGGGGCGBBGSSS Direction: Forward Position #: 4 Overlap #: 12 Alignment: BVCGVGCGGDGCGVBGSSS ---BBCGGKGGMGBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 74 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- twTACATAvw wwTAAAwAww Reverse Complement Reverse Complement DBTATGTAHH HHTWTTTADD HHTATKTAHH Direction: Backward Position #: 1 Overlap #: 10 Alignment: DBTATGTAHH HHTWTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Original Motif Reverse Complement HHTATKTAHH DHKATGTKTKTGTD DHTATGTRTKTGTD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHTATKTAHH---- DHKATGTKTKTGTD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAwAAww Original Motif Reverse Complement DHTATGTRTKTGTD HHTTWTTADD DHTWTKTADDTGTD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHTATGTRTKTGTD HHTTWTTADD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Reverse Complement Reverse Complement HACADDTARAWAHD DDTAAAAATHD HDYAAAWAWAWAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: HACADDTARAWAHD DDTAAAAATHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wyATTTTAww Original Motif Reverse Complement HDYAAAWAWAWAHD DDTAAAATHD HDTAAAAWDHWAHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HDYAAAWAWAWAHD DDTAAAATHD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wrTGTATACAyw Original Motif Original Motif HDTAAAAWDHWAHD HDTGTATACAHD HDTRWAWAHAHAHD Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDTAAAAWDHWAHD HDTGTATACAHD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Reverse Complement Original Motif DHTHTDTWTWKADH DHAYAYAYRTGTGTRTDH DHAYAYAYRTGTGTDTDTDTWTWKADH Direction: Forward Position #: 14 Overlap #: 5 Alignment: -------------DHTHTDTWTWKADH DHAYAYAYRTGTGTRTDH--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwWAAAAAwa Combined Motif Reverse Complement Original Motif HDTRWAWAHADADACACAKKTKTKTHD WWAAAAAAWH HDTRWAWAHWWAAAMAHAKKTKTKTHD Direction: Forward Position #: 9 Overlap #: 10 Alignment: HDTRWAWAHADADACACAKKTKTKTHD --------WWAAAAAAWH--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wtTTWwAAAaw Combined Motif Reverse Complement Reverse Complement DHAYAYAYRTDTYTTTWWHTWTWKADH DDTTTWAAAHH DHAYAYAYRHDTTTWWAAHWWTWKADH Direction: Forward Position #: 10 Overlap #: 11 Alignment: DHAYAYAYRTDTYTTTWWHTWTWKADH ---------DDTTTWAAAHH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Original Motif DHAYAYAYRHDTTTWWAAHWWTWKADH HVCATGCATGCABD HVCATGCATRCAYAYAYRHDTTTWWAAHWWTWKADH Direction: Forward Position #: 10 Overlap #: 5 Alignment: ---------DHAYAYAYRHDTTTWWAAHWWTWKADH HVCATGCATGCABD---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 75 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yayAyAyACATrya ryayAyAyrtGTRTrTry Original Motif Original Motif HACAYAYACATRHD DHAYAYAYRTGTGTRTDH DHAYAYAYAYRTRTRTDH Direction: Backward Position #: 4 Overlap #: 14 Alignment: -HACAYAYACATRHD--- DHAYAYAYRTGTGTRTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Original Motif DHAYAYAYAYRTRTRTDH HVCATGCATGCABD HDCAYRCATRCATRTRTDH Direction: Forward Position #: 2 Overlap #: 13 Alignment: -DHAYAYAYAYRTRTRTDH HVCATGCATGCABD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Original Motif HDCAYRCATRCATRTRTDH CAYACACACACACA CACAYACAYACAYATRTDH Direction: Forward Position #: 1 Overlap #: 14 Alignment: HDCAYRCATRCATRTRTDH CAYACACACACACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 25 Combined Motif Reverse Complement Reverse Complement HDAKATKTGTKTGTKTGTG TGTGTGKVTGTGTG HDATRTGTGTGTGTGTGTG Direction: Forward Position #: 4 Overlap #: 14 Alignment: HDAKATKTGTKTGTKTGTG ---TGTGTGKVTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Original Motif Reverse Complement HDATRTGTGTGTGTGTGTG VRVDGGHACAVDDKGTHCTDWH VRVDRKDWSWGKDTGTBYKTDH Direction: Forward Position #: 3 Overlap #: 19 Alignment: --HDATRTGTGTGTGTGTGTG- VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAATTAATTAww Original Motif Reverse Complement VRVDRKDWSWGKDTGTBYKTDH DHTAATTAATTADH DHTAATTAATTADDWSWGKDTGTBYKTDH Direction: Forward Position #: 8 Overlap #: 7 Alignment: -------VRVDRKDWSWGKDTGTBYKTDH DHTAATTAATTADH--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Original Motif Original Motif DHTAATTAATTADDWSWGKDTGTBYKTDH TKKTTTGTTTTTTT DHTAATTAATTADDWSWDKKTKTBYTTTTTT Direction: Forward Position #: 18 Overlap #: 12 Alignment: DHTAATTAATTADDWSWGKDTGTBYKTDH-- -----------------TKKTTTGTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement DHTAATTAATTADDWSWDKKTKTBYTTTTTT MSGKKRCGCWDCABTGBBCD DHTAATTAATTADDHSDKKDYKYDTBHDTKTBCD Direction: Forward Position #: 15 Overlap #: 17 Alignment: DHTAATTAATTADDWSWDKKTKTBYTTTTTT--- --------------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Reverse Complement Original Motif HGVARADHBADKYMDRRHSHDHTAATTAATTAHD CCCCMAAMCAMCCMCMMMCV CSMCAAAHCAVBCMHVVMSHDHTAATTAATTAHD Direction: Forward Position #: 1 Overlap #: 20 Alignment: HGVARADHBADKYMDRRHSHDHTAATTAATTAHD CCCCMAAMCAMCCMCMMMCV-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RXRRAR_DR5 Combined Motif Reverse Complement Reverse Complement DHTAATTAATTADDHSRBBDRGBBTGHTTTGRSG TGACCTCKVVBTGAYCK DHTAATTAATKABCTSKBBBTGRYYKHTTTGRSG Direction: Forward Position #: 10 Overlap #: 17 Alignment: DHTAATTAATTADDHSRBBDRGBBTGHTTTGRSG ---------TGACCTCKVVBTGAYCK-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 76 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwWAAAAAwa wtATTTTTAww Reverse Complement Original Motif HWTTTTTTWW DHATTTTTADD DHATTTTTWWD Direction: Backward Position #: 1 Overlap #: 10 Alignment: -HWTTTTTTWW DHATTTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAwAAww Reverse Complement Original Motif DWWAAAAATHD DDTAAWAAHH DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DWWAAAAATHD DDTAAWAAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Original Motif Original Motif DDTAAAAATHD DDTAAAWAHH DDTAAAAAHHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAATHD DDTAAAWAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Original Motif DDTAAAAAHHD AAAAAAAAAAA AAWAAAAAAAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: DDTAAAAAHHD AAAAAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Original Motif Original Motif AAWAAAAAAAA HHCAAAAACAH AAMAAAAAMAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAWAAAAAAAA HHCAAAAACAH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wyATTTTAww Reverse Complement Original Motif TTRTTTTTRTT DHATTTTADD DHATTTTWDDT Direction: Forward Position #: 1 Overlap #: 10 Alignment: TTRTTTTTRTT DHATTTTADD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Original Motif Reverse Complement DHATTTTWDDT TTGTTTTGTTT HHRTTTTGTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHATTTTWDDT TTGTTTTGTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Reverse Complement Original Motif AAACAAAAMHH HHTTTWAAADD HHWTWAAAAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAACAAAAMHH HHTTTWAAADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dwCTTTTCwy Reverse Complement Original Motif DHTTTTWAWHH DHCTTTTCHH DHYTTTTCWHH Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHTTTTWAWHH DHCTTTTCHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Reverse Complement Reverse Complement HHWGAAAAKHD AAAAAAACAAARRA AAAAAAACAAADRAAAAKHD Direction: Forward Position #: 10 Overlap #: 5 Alignment: ---------HHWGAAAAKHD AAAAAAACAAARRA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 77 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGCTswGCCms sssCGssGCsss Original Motif Original Motif VBGCTSAGCCHB SSSCGSSGCSSS VBGCKSVGCCVB Direction: Forward Position #: 1 Overlap #: 12 Alignment: VBGCTSAGCCHB SSSCGSSGCSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGMsGRGCGss Reverse Complement Reverse Complement BVGGCVSYGCBV BBCGCCCSGCVV BVSGCMCYGCVV Direction: Forward Position #: 1 Overlap #: 12 Alignment: BVGGCVSYGCBV BBCGCCCSGCVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Reverse Complement BVSGCMCYGCVV VAGGCCBBGGCVBB VAGGCCBBGGCVSGCMCYGCVV Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------BVSGCMCYGCVV VAGGCCBBGGCVBB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Reverse Complement Original Motif VVGCKGRGCSVGCCBVGGCCTV HVCCAGTGCABD VVSCDGTGCRBVCCBVGGCCTV Direction: Forward Position #: 1 Overlap #: 12 Alignment: VVGCKGRGCSVGCCBVGGCCTV HVCCAGTGCABD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Reverse Complement Reverse Complement VAGGCCBBGGVBKGCACDGSVV VHGARAYAGAVV VHGARAYAGRCCBBGGVBKGCACDGSVV Direction: Forward Position #: 7 Overlap #: 6 Alignment: ------VAGGCCBBGGVBKGCACDGSVV VHGARAYAGAVV---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCwGGCCwGCss Combined Motif Original Motif Reverse Complement VHGARAYAGRCCBBGGVBKGCACDGSVV BBGCTGGCCWGBB VHGARAYAGVVSCHGGCCDGCDCDGSVV Direction: Forward Position #: 10 Overlap #: 13 Alignment: VHGARAYAGRCCBBGGVBKGCACDGSVV ---------BBGCTGGCCWGBB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement VVSCDGDGCDGGCCHGSVVCTKTKTCHB GGYGCTGTCCATGGTGCTGAA GVHSCTGTSCHBGSYVSBGMCTKTKTCHB Direction: Forward Position #: 2 Overlap #: 20 Alignment: -VVSCDGDGCDGGCCHGSVVCTKTKTCHB GGYGCTGTCCATGGTGCTGAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Original Motif VHGARAYAGYCVSVMSCBHGSACAGSDVC HWDAGHACRHHVTGTHCCHVMV VHGARAHADDSHVCABCVTGBACHGVHVC Direction: Forward Position #: 7 Overlap #: 22 Alignment: VHGARAYAGYCVSVMSCBHGSACAGSDVC ------HWDAGHACRHHVTGTHCCHVMV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement VHGARAHADDSHVCABCVTGBACHGVHVC MSGKKRCGCWDCABTGBBCD VHGARAHADDSHVCAHCGBGDMSCDBVVBTGBBCD Direction: Forward Position #: 16 Overlap #: 14 Alignment: VHGARAHADDSHVCABCVTGBACHGVHVC------ ---------------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement VHGARAHADDSHVCAHCGBGDMSCDBVVBTGBBCD TGRCCTKTGHCCKAB VHGARAHADDSHVCAHCGBGDMBSDCCDBTGBCCKAB Direction: Forward Position #: 23 Overlap #: 13 Alignment: VHGARAHADDSHVCAHCGBGDMSCDBVVBTGBBCD-- ----------------------TGRCCTKTGHCCKAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 78 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss ssGMsGRGCGss Reverse Complement Reverse Complement SSSGCSSCGSSS BBCGCCCSGCVV BBCGCSCCGCVV Direction: Forward Position #: 1 Overlap #: 12 Alignment: SSSGCSSCGSSS BBCGCCCSGCVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCTswGCCms Reverse Complement Original Motif VVGCGGSGCGBB VBGCTSAGCCHB VVGCKSVGCSVB Direction: Forward Position #: 1 Overlap #: 12 Alignment: VVGCGGSGCGBB VBGCTSAGCCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Original Motif Reverse Complement VVGCKSVGCSVB SSGGGCGGSGGCGSS SSGGGCGGSGSCGCBSVGCSVB Direction: Forward Position #: 11 Overlap #: 5 Alignment: ----------VVGCKSVGCSVB SSGGGCGGSGGCGSS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif SSGGGCGGSGSCGCBSVGCSVB BBVGCCBVGGCCTV SSGGGVGSCGVGGCCKVGCSVB Direction: Forward Position #: 4 Overlap #: 14 Alignment: SSGGGCGGSGSCGCBSVGCSVB ---BBVGCCBVGGCCTV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Original Motif Reverse Complement SSGGGVGSCGVGGCCKVGCSVB BBCGGKGGMGBB SSGGGVGCGGVGGCSBVGCSVB Direction: Forward Position #: 6 Overlap #: 12 Alignment: SSGGGVGSCGVGGCCKVGCSVB -----BBCGGKGGMGBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ccCCAGTGCAbr Combined Motif Reverse Complement Reverse Complement BVSGCVBSGCCVCCGCVCCCSS DBTGCACTGGVD BVSGCBBYGCMCYSGVVCCCSS Direction: Forward Position #: 6 Overlap #: 12 Alignment: BVSGCVBSGCCVCCGCVCCCSS -----DBTGCACTGGVD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif SSGGGVVCSMGYGCMBBGCSVB VDBHMAGGTCACCCTGACCY SSGGGVVCSMGBGCMDGGYCABCCTGACCY Direction: Forward Position #: 11 Overlap #: 12 Alignment: SSGGGVVCSMGYGCMBBGCSVB-------- ----------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif MGGTCAGGBTGKCCDRGCVCYSGVVCCCSS DGVBCABTGDWGCGKRRCSR MGGTCAGGBTGKCCDRDVVBYVSBGVHSCGKRRCSR Direction: Forward Position #: 17 Overlap #: 14 Alignment: MGGTCAGGBTGKCCDRGCVCYSGVVCCCSS------ ----------------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Reverse Complement MGGTCAGGBTGKCCDRDVVBYVSBGVHSCGKRRCSR VRVDGGHACAVDDKGTHCTDWH MGGTCAGGBTGKCCDRDVVBYVRBVVGBMCDRDBBGTHCTDWH Direction: Forward Position #: 22 Overlap #: 15 Alignment: MGGTCAGGBTGKCCDRDVVBYVSBGVHSCGKRRCSR------- ---------------------VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sgCTGGCCAGcs Original Motif Original Motif MGGTCAGGBTGKCCDRDVVBYVRBVVGBMCDRDBBGTHCTDWH BBCTGGCCAGVV BBCWGGYCAGBVTGKCCDRDVVBYVRBVVGBMCDRDBBGTHCTDWH Direction: Forward Position #: 4 Overlap #: 9 Alignment: ---MGGTCAGGBTGKCCDRDVVBYVRBVVGBMCDRDBBGTHCTDWH BBCTGGCCAGVV---------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 79 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACACACACACA CACACACACACA Original Motif Original Motif CACACACACACA CACACACACACA CACACACACACA Direction: Backward Position #: 1 Overlap #: 12 Alignment: CACACACACACA CACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Reverse Complement Reverse Complement TGTGTGTGTGTG TGTGTGTGTGTKTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGTG-- TGTGTGTGTGTKTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Reverse Complement Original Motif CACACACACACACA CACACAVRCACACA CACACACACACACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACACACACACA CACACAVRCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Original Motif Original Motif CACACACACACACA HACAYAYACATRHD CACACACACAYACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACACACACACA HACAYAYACATRHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Original Motif Original Motif CACACACACAYACA DHAYAYAYRTGTGTRTDH DYAYACAYAYRTRYRTDH Direction: Forward Position #: 2 Overlap #: 14 Alignment: -CACACACACAYACA--- DHAYAYAYRTGTGTRTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Reverse Complement DYAYACAYAYRTRYRTDH VHGARAYAGAVV VHGAVAYASAHVTRYRTDH Direction: Forward Position #: 2 Overlap #: 11 Alignment: -DYAYACAYAYRTRYRTDH VHGARAYAGAVV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAAAAAAAAAA Combined Motif Original Motif Original Motif VHGAVAYASAHVTRYRTDH HVCATGCATGCABD VHBACAYRCATRYAYRTDH Direction: Forward Position #: 3 Overlap #: 14 Alignment: VHGAVAYASAHVTRYRTDH --HVCATGCATGCABD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Original Motif VHBACAYRCATRYAYRTDH CCCCMAAMCAMCCMCMMMCV CCCCMAVMCAYMCAYVCMBVTDH Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----VHBACAYRCATRYAYRTDH CCCCMAAMCAMCCMCMMMCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Reverse Complement Original Motif HDABBYGBKTGRKTGYBTYGGGG TKKTTTGTTTTTTT WKDTTTGHKTKDKTGYBTYGGGG Direction: Forward Position #: 1 Overlap #: 14 Alignment: HDABBYGBKTGRKTGYBTYGGGG TKKTTTGTTTTTTT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yrTGTGCACAyr Reverse Complement Reverse Complement CCCCMAVMCARDRARHCAAADRW BBTGTGCACAVV BBTGTSCMCAMVMCARDRARHCAAADRW Direction: Forward Position #: 6 Overlap #: 7 Alignment: -----CCCCMAVMCARDRARHCAAADRW BBTGTGCACAVV---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 80 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCwGGCCwGCss ESR1 Reverse Complement Reverse Complement BBGCTGGCCWGBB MGGTCAGGGTGACCTRDBHV MGGTCAVGCTGRCCWGBBHV Direction: Forward Position #: 6 Overlap #: 13 Alignment: -----BBGCTGGCCWGBB-- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif VDBBCWGGMCAGCVTGACCY TTCAGCACCATGGACAGCKCC TTCAGVACCMWGGMCAGCBBSACCY Direction: Forward Position #: 6 Overlap #: 16 Alignment: -----VDBBCWGGMCAGCVTGACCY TTCAGCACCATGGACAGCKCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Reverse Complement TTCAGVACCMWGGMCAGCBBSACCY DVTGCATGCATGBH DVTGCATKCAKGDHCMWGGMCAGCBBSACCY Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------TTCAGVACCMWGGMCAGCBBSACCY DVTGCATGCATGBH----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement MGGTSBBGCTGYCCWRGDDCYTGYATGCABD MSGKKRCGCWDCABTGBBCD MGGTSHVGBTGYSCWDSVDBBTGCDTGCABD Direction: Forward Position #: 6 Overlap #: 20 Alignment: MGGTSBBGCTGYCCWRGDDCYTGYATGCABD -----MSGKKRCGCWDCABTGBBCD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Original Motif DVTGCADGCAVBHBSHWGSKCABCVDSACCY HWDAGHACRHHVTGTHCCHVMV DVTGCADGCAVBHBSHWGRGMACMBHSHSYHCCHVMV Direction: Forward Position #: 16 Overlap #: 16 Alignment: DVTGCADGCAVBHBSHWGSKCABCVDSACCY------ ---------------HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Original Motif DVTGCADGCAVBHBSHWGRGMACMBHSHSYHCCHVMV SSCGCCSCCGCCCSS DVTGCADGCAVBHBSHWGRGMACVBCGHCBHCVCCCVS Direction: Forward Position #: 24 Overlap #: 14 Alignment: DVTGCADGCAVBHBSHWGRGMACMBHSHSYHCCHVMV- -----------------------SSCGCCSCCGCCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Original Motif DVTGCADGCAVBHBSHWGRGMACVBCGHCBHCVCCCVS CCCCMAAMCAMCCMCMMMCV DVTGCADGCAVBHBSHWGRGMACVBCSCCMMMVCACCCMCMMMCV Direction: Forward Position #: 26 Overlap #: 13 Alignment: DVTGCADGCAVBHBSHWGRGMACVBCGHCBHCVCCCVS------- -------------------------CCCCMAAMCAMCCMCMMMCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sgCTGGCCAGcs Reverse Complement Original Motif BGRRRGRGGGTGVRYRGGSGBVGTRCMCWHSVDBBTGCDTGCABD BBCTGGCCAGVV BBCTGGCCHGVVRGRGGGTGVRYRGGSGBVGTRCMCWHSVDBBTGCDTGCABD Direction: Forward Position #: 9 Overlap #: 4 Alignment: --------BGRRRGRGGGTGVRYRGGSGBVGTRCMCWHSVDBBTGCDTGCABD BBCTGGCCAGVV----------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGCTswGCCms Combined Motif Original Motif Reverse Complement BBCTGGCCHGVVRGRGGGTGVRYRGGSGBVGTRCMCWHSVDBBTGCDTGCABD BDGGCTSAGCBV BBCTGGCCHGVVRGRGGGBGGGCDGRGSBVGTRCMCWHSVDBBTGCDTGCABD Direction: Forward Position #: 19 Overlap #: 12 Alignment: BBCTGGCCHGVVRGRGGGTGVRYRGGSGBVGTRCMCWHSVDBBTGCDTGCABD ------------------BDGGCTSAGCBV----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ccCCAGTGCAbr Combined Motif Original Motif Reverse Complement BBCTGGCCHGVVRGRGGGBGGGCDGRGSBVGTRCMCWHSVDBBTGCDTGCABD DBTGCACTGGVD BBCTGGCCHGVVRGRGGGBBKGCASWGGBVGTRCMCWHSVDBBTGCDTGCABD Direction: Forward Position #: 19 Overlap #: 12 Alignment: BBCTGGCCHGVVRGRGGGBGGGCDGRGSBVGTRCMCWHSVDBBTGCDTGCABD ------------------DBTGCACTGGVD----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 81 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwTAAwAAww wwTAAAwAww Reverse Complement Reverse Complement HHTTWTTADD HHTWTTTADD HHTTTTTADD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHTTWTTADD HHTWTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Reverse Complement Reverse Complement DDTAAAAAHH DDTAAAAATHD DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAAHH- DDTAAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif DDTAAAAATHD WWAAAAAAWH DWWAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAATHD WWAAAAAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wyATTTTAww Original Motif Reverse Complement DWWAAAAATHD DDTAAAATHD DDTAAAAWHHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DWWAAAAATHD DDTAAAATHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Reverse Complement Reverse Complement DHHWTTTTADD DDTTTWAAAHH DDTTTTWWAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHHWTTTTADD DDTTTWAAAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Reverse Complement Original Motif DHTWWAAAADD HHCAAAAACAH HHYAAAAAMHH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHTWWAAAADD HHCAAAAACAH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dwCTTTTCwy Original Motif Reverse Complement HHYAAAAAMHH DHGAAAAGHD DHBAAAARHDH Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHYAAAAAMHH DHGAAAAGHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Original Motif Original Motif DHBAAAARHDH HHTACATAVD DHTAMAWAHDH Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHBAAAARHDH HHTACATAVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAATTAATTAww Original Motif Reverse Complement DHTAMAWAHDH DHTAATTAATTADH DHTAAWTAATTADH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHTAMAWAHDH--- DHTAATTAATTADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAAAAAAAAAA Combined Motif Original Motif Original Motif DHTAAWTAATTADH AAAAAAAAAAA DAWAAAWAAAWADH Direction: Forward Position #: 2 Overlap #: 11 Alignment: DHTAAWTAATTADH -AAAAAAAAAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 82 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- rmACAGCAGsr ssCGsCwsCss Original Motif Reverse Complement VVACAGCAGVD BBGSWGSCGBB VVRCAGCMGVV Direction: Forward Position #: 1 Overlap #: 11 Alignment: VVACAGCAGVD BBGSWGSCGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 83 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwTAAAwAww wwTAAwAAww Original Motif Original Motif DDTAAAWAHH DDTAAWAAHH DDTAAAAAHH Direction: Backward Position #: 1 Overlap #: 10 Alignment: DDTAAAWAHH DDTAAWAAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Reverse Complement DDTAAAAAHH DDTAAAAATHD DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAAHH- DDTAAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif DDTAAAAATHD WWAAAAAAWH DWWAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAATHD WWAAAAAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Original Motif Original Motif DWWAAAAATHD HHTACATAVD DHTAMAWAHHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DWWAAAAATHD HHTACATAVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wyATTTTAww Original Motif Reverse Complement DHTAMAWAHHD DDTAAAATHD DHTAAAAWHDD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHTAMAWAHHD DDTAAAATHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Original Motif Original Motif DHTAAAAWHDD HHCAAAAACAH HHYAAAAACHH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHTAAAAWHDD HHCAAAAACAH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Original Motif Original Motif HHYAAAAACHH HHTTTWAAADD HHTWWAAAMHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHYAAAAACHH HHTTTWAAADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAATTAATTAww Original Motif Original Motif HHTWWAAAMHD HDTAATTAATTAHD HDTAATTAATTAWWAAMHD Direction: Forward Position #: 9 Overlap #: 6 Alignment: --------HHTWWAAAMHD HDTAATTAATTAHD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dwCTTTTCwy Reverse Complement Original Motif DHYTTWWTAATTAATTADH DHCTTTTCHH DHCTTTTYAHTTAATTADH Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHYTTWWTAATTAATTADH DHCTTTTCHH--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAAAAAAAAAA Combined Motif Original Motif Reverse Complement DHCTTTTYAHTTAATTADH TTTTTTTTTTT DHCTTTTTTTTTWWTTADH Direction: Forward Position #: 4 Overlap #: 11 Alignment: DHCTTTTYAHTTAATTADH ---TTTTTTTTTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 84 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsAGCTACwy Ar Reverse Complement Original Motif VHGTAGCTVD HWDAGHACRHHVTGTHCCHVMV HDHRKARCWBHVTGTHCCHVMV Direction: Backward Position #: 12 Overlap #: 10 Alignment: -VHGTAGCTVD----------- HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement VRVDGGHACAVDBWGMTRMHDH GGYGCTGTCCATGGTGCTGAA GGDVCKGTMCABGGTGCTGMDDH Direction: Forward Position #: 2 Overlap #: 20 Alignment: -VRVDGGHACAVDBWGMTRMHDH GGYGCTGTCCATGGTGCTGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement GGDVCKGTMCABGGTGCTGMDDH MSGKKRCGCWDCABTGBBCD GGDVCKGTMCAHGGTGMYGCWDHABTGBBCD Direction: Forward Position #: 12 Overlap #: 12 Alignment: GGDVCKGTMCABGGTGCTGMDDH-------- -----------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCksCGss Combined Motif Original Motif Original Motif GGDVCKGTMCAHGGTGMYGCWDHABTGBBCD VVCGCKSCGBB GGDVCKGTMCVVCGYKSCGCDDHABTGBBCD Direction: Forward Position #: 11 Overlap #: 11 Alignment: GGDVCKGTMCAHGGTGMYGCWDHABTGBBCD ----------VVCGCKSCGBB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCKCwsCGss Combined Motif Original Motif Original Motif GGDVCKGTMCVVCGYKSCGCDDHABTGBBCD BVCGCWSCGBV GGDVCKGTMCVVCGCDSCGVBDHABTGBBCD Direction: Forward Position #: 11 Overlap #: 11 Alignment: GGDVCKGTMCVVCGYKSCGCDDHABTGBBCD ----------BVCGCWSCGBV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rmACAGCAGsr Original Motif Reverse Complement GGDVCKGTMCVVCGCDSCGVBDHABTGBBCD DVCTGCTGTVB DGCTGCTGTVCVVCGCDSCGVBDHABTGBBCD Direction: Forward Position #: 2 Overlap #: 10 Alignment: -GGDVCKGTMCVVCGCDSCGVBDHABTGBBCD DVCTGCTGTVB--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Original Motif Reverse Complement DGCTGCTGTVCVVCGCDSCGVBDHABTGBBCD HTGTTTTTGHH HHGYTKYTGTHCVVCGCDSCGVBDHABTGBBCD Direction: Forward Position #: 2 Overlap #: 10 Alignment: -DGCTGCTGTVCVVCGCDSCGVBDHABTGBBCD HTGTTTTTGHH---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGsCwsCss Combined Motif Reverse Complement Original Motif HGVBCABTDDBVCGSDGCGVVGHACAMRAMCHH BBCGSCWSCBB HGVBCABTDDBVCGSCDSSVVGHACAMRAMCHH Direction: Forward Position #: 11 Overlap #: 11 Alignment: HGVBCABTDDBVCGSDGCGVVGHACAMRAMCHH ----------BBCGSCWSCBB------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Combined Motif Original Motif Original Motif HGVBCABTDDBVCGSCDSSVVGHACAMRAMCHH DHAYAYAYRTGTGTRTDH HGVDHAYHBABVYGBVTVBVBGHACAMRAMCHH Direction: Forward Position #: 4 Overlap #: 18 Alignment: HGVBCABTDDBVCGSCDSSVVGHACAMRAMCHH ---DHAYAYAYRTGTGTRTDH------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGsCTCss Original Motif Reverse Complement HGVDHAYHBABVYGBVTVBVBGHACAMRAMCHH BBGAGSCGVV BBGAGSCGVVHAYHBABVYGBVTVBVBGHACAMRAMCHH Direction: Forward Position #: 7 Overlap #: 4 Alignment: ------HGVDHAYHBABVYGBVTVBVBGHACAMRAMCHH BBGAGSCGVV----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 85 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wtATTTTTAww aaCAAAAACaa Reverse Complement Original Motif DDTAAAAATHD HHCAAAAACAH HDYAAAAAYHH Direction: Backward Position #: 1 Overlap #: 11 Alignment: DDTAAAAATHD HHCAAAAACAH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Original Motif Original Motif HDYAAAAAYHH HHTTTWAAADD HHTWWAAAHHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: HDYAAAAAYHH HHTTTWAAADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Original Motif HHTWWAAAHHD AAAAAAAAAAA AAWAAAAAAAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHTWWAAAHHD AAAAAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Original Motif Original Motif AAWAAAAAAAA AAACAAAACAA AAAMAAAAMAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAWAAAAAAAA AAACAAAACAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Reverse Complement Original Motif TTRTTTTRTTT BBTCTKTKTCHB BHKYTTTKTCHB Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTRTTTTRTTT- BBTCTKTKTCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAATTAATTAww Reverse Complement Reverse Complement VHGAYAAAMRHV DHTAATTAATTADH HHKAAWWAAWWADH Direction: Forward Position #: 1 Overlap #: 12 Alignment: VHGAYAAAMRHV-- DHTAATTAATTADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif HDTWWTTWWTTRHH TGAMCTTTGMMCYT TGAMCTTTRVHHHTTWWTTRHH Direction: Forward Position #: 9 Overlap #: 6 Alignment: --------HDTWWTTWWTTRHH TGAMCTTTGMMCYT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Reverse Complement Reverse Complement HHKAAWWAAHDHBMAAAGRTCA AAAAAAACAAARRA HHKAAAAAAADHAAAAARRTCA Direction: Forward Position #: 5 Overlap #: 14 Alignment: HHKAAWWAAHDHBMAAAGRTCA ----AAAAAAACAAARRA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yayAyAyACATrya Combined Motif Reverse Complement Reverse Complement TGAMMTTTTTDDTTTTTTTRHH DHKATGTKTKTGTD TGAMMTHTWTGTKTTTKTTRHH Direction: Forward Position #: 6 Overlap #: 14 Alignment: TGAMMTTTTTDDTTTTTTTRHH -----DHKATGTKTKTGTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Combined Motif Original Motif Original Motif TGAMMTHTWTGTKTTTKTTRHH DHAYAYAYRTGTGTRTDH TGAHMYAYAYRTKTKTDTDDHH Direction: Forward Position #: 3 Overlap #: 18 Alignment: TGAMMTHTWTGTKTTTKTTRHH --DHAYAYAYRTGTGTRTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 86 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- aaCAAAAACaa aaACAAAACaa Reverse Complement Reverse Complement HTGTTTTTGHH TTGTTTTGTTT TTGTTTTKKTT Direction: Backward Position #: 1 Overlap #: 11 Alignment: HTGTTTTTGHH TTGTTTTGTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Original Motif TTGTTTTKKTT DHATTTTTADD HHRTTTTTRDH Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTGTTTTKKTT DHATTTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Original Motif HDKAAAAAKHH AAAAAAAAAAA AAAAAAAADAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: HDKAAAAAKHH AAAAAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Reverse Complement Reverse Complement TTDTTTTTTTT DHKATGTKTKTGTD THKWTKTTTKTGTD Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTDTTTTTTTT--- DHKATGTKTKTGTD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement THKWTKTTTKTGTD TGTGTGTGTGTG TBTKTGTKTGTGTD Direction: Forward Position #: 1 Overlap #: 12 Alignment: THKWTKTTTKTGTD TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Original Motif TBTKTGTKTGTGTD BBTCTKTKTCHB TBTCTKTKTSTBTD Direction: Forward Position #: 1 Overlap #: 12 Alignment: TBTKTGTKTGTGTD BBTCTKTKTCHB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement TBTCTKTKTSTBTD TGTGTGTGTGTG TGTSTGTGTGTGTD Direction: Forward Position #: 1 Overlap #: 12 Alignment: TBTCTKTKTSTBTD TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Reverse Complement Original Motif HACACACACASACA CAYACACACACACA CACACACACACACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: HACACACACASACA CAYACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Original Motif CACACACACACACA CCCCMAAMCAMCCMCMMMCV CCCCMAAMCAMCCMCMCMCACACACACACA Direction: Forward Position #: 17 Overlap #: 4 Alignment: ----------------CACACACACACACA CCCCMAAMCAMCCMCMMMCV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Reverse Complement Original Motif TGTGTGTGTGTGYGRGRGGRTGRTTYGGGG TKKTTTGTTTTTTT TTKTKTGTKTKTKTGRGRGGRTGRTTYGGGG Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TGTGTGTGTGTGYGRGRGGRTGRTTYGGGG TKKTTTGTTTTTTT----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 87 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGGsYCGss ssCGCksCGss Original Motif Reverse Complement BSCGGSCCGSV BBCGSRGCGVV BSCGGVSCGSV Direction: Forward Position #: 1 Overlap #: 11 Alignment: BSCGGSCCGSV BBCGSRGCGVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sssCGssGCsss Original Motif Reverse Complement BSCGGVSCGSV SSSGCSSCGSSS SSSGCSSCGSCGGVSCGSV Direction: Forward Position #: 9 Overlap #: 4 Alignment: --------BSCGGVSCGSV SSSGCSSCGSSS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCKCwsCGss Combined Motif Original Motif Original Motif SSSGCSSCGSCGGVSCGSV BVCGCWSCGBV SSSGCCGCDSCGSVSCGSV Direction: Forward Position #: 4 Overlap #: 11 Alignment: SSSGCSSCGSCGGVSCGSV ---BVCGCWSCGBV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Original Motif Reverse Complement SSSGCCGCDSCGSVSCGSV BBCGCCCSGCVV SSSSCCGCHCCGCVSCGSV Direction: Forward Position #: 4 Overlap #: 12 Alignment: SSSGCCGCDSCGSVSCGSV ---BBCGCCCSGCVV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sgCTGGCCAGcs Reverse Complement Original Motif VSCGSVGCGGDGCGGSSSS BBCTGGCCAGVV BVCKGGSCRGVGCGGSSSS Direction: Forward Position #: 1 Overlap #: 12 Alignment: VSCGSVGCGGDGCGGSSSS BBCTGGCCAGVV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGsCwsCss Combined Motif Original Motif Reverse Complement BVCKGGSCRGVGCGGSSSS BBGSWGSCGBB BVCKSVGCAGSSSGBSSSS Direction: Forward Position #: 5 Overlap #: 11 Alignment: BVCKGGSCRGVGCGGSSSS ----BBGSWGSCGBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCwGGCCwGCss Combined Motif Original Motif Reverse Complement BVCKSVGCAGSSSGBSSSS BBGCTGGCCWGBB BVCBBGSHGGCCVGBBSSS Direction: Forward Position #: 4 Overlap #: 13 Alignment: BVCKSVGCAGSSSGBSSSS ---BBGCTGGCCWGBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Reverse Complement Original Motif SSSBBCBGGCCDSCBBGVB BBCRCCYCCGBB SSSBBCDSSCCCGCBBGVB Direction: Forward Position #: 4 Overlap #: 12 Alignment: SSSBBCBGGCCDSCBBGVB ---BBCRCCYCCGBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Original Motif SSSBBCDSSCCCGCBBGVB SSCGCCSCCGCCCSS SSSBCSSCSCCBSCCBGVB Direction: Forward Position #: 3 Overlap #: 15 Alignment: SSSBBCDSSCCCGCBBGVB --SSCGCCSCCGCCCSS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Reverse Complement Reverse Complement BVCBGGSBGGSGSSGBSSS VRVDGGHACAVDDKGTHCTDWH BVCBGGSBGGVGGGDDCVSDDKGTHCTDWH Direction: Forward Position #: 9 Overlap #: 11 Alignment: BVCBGGSBGGSGSSGBSSS----------- --------VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 88 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss ssCGCCsCCrCCCss Reverse Complement Reverse Complement BBCGGKGGMGBB SSGGGCGGSGGCGSS SSGGGCGGGGGCGBB Direction: Forward Position #: 4 Overlap #: 12 Alignment: ---BBCGGKGGMGBB SSGGGCGGSGGCGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Reverse Complement Reverse Complement BBCGCCCCCGCCCSS BBCGCCCSGCVV BBCSSCCCCGCCCSS Direction: Forward Position #: 2 Overlap #: 12 Alignment: BBCGCCCCCGCCCSS -BBCGCCCSGCVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss Combined Motif Reverse Complement Reverse Complement SSGGGCGGGGSSGBB SSSGCSSCGSSS SSSSGCGGSGSSGBB Direction: Forward Position #: 2 Overlap #: 12 Alignment: SSGGGCGGGGSSGBB -SSSGCSSCGSSS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif BBCSSCSCCGCSSSS BBVGCCBVGGCCTV BBSSSCSVSGCCTVS Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBCSSCSCCGCSSSS BBVGCCBVGGCCTV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement BBSSSCSVSGCCTVS MSGKKRCGCWDCABTGBBCD MSGKKRCGCWDCABBBBBCBSVSGCCTVS Direction: Forward Position #: 15 Overlap #: 6 Alignment: --------------BBSSSCSVSGCCTVS MSGKKRCGCWDCABTGBBCD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sgCTGGCCAGcs Reverse Complement Reverse Complement SVAGGCSVSBGBBBVBTGDWGCGKRYCSR VVCTGGCCAGBB VVCKGSCCVGVBBBVBTGDWGCGKRYCSR Direction: Forward Position #: 1 Overlap #: 12 Alignment: SVAGGCSVSBGBBBVBTGDWGCGKRYCSR VVCTGGCCAGBB----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Reverse Complement VVCKGSCCVGVBBBVBTGDWGCGKRYCSR BGRRRGRGGRTGRTTYGGGG VVCKGSCCVGVBGVVVKGRRGYGKDTYGRGG Direction: Forward Position #: 12 Overlap #: 18 Alignment: VVCKGSCCVGVBBBVBTGDWGCGKRYCSR-- -----------BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCwGGCCwGCss Combined Motif Original Motif Reverse Complement VVCKGSCCVGVBGVVVKGRRGYGKDTYGRGG BBGCTGGCCWGBB VVCKGSCCVGVBGCDGGSSDGBGKDTYGRGG Direction: Forward Position #: 11 Overlap #: 13 Alignment: VVCKGSCCVGVBGVVVKGRRGYGKDTYGRGG ----------BBGCTGGCCWGBB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ccCCAGTGCAbr Combined Motif Original Motif Reverse Complement VVCKGSCCVGVBGCDGGSSDGBGKDTYGRGG DBTGCACTGGVD VVCKGSCVVKGCRCTGGVVDGBGKDTYGRGG Direction: Forward Position #: 8 Overlap #: 12 Alignment: VVCKGSCCVGVBGCDGGSSDGBGKDTYGRGG -------DBTGCACTGGVD------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfp423 Reverse Complement Reverse Complement CCMCKADYCVCDVVCCAGKGCRBVGSCRGVV GYRYCCMTKGGYRSC GYRYCCMHKRGYVVCDVVCCAGKGCRBVGSCRGVV Direction: Forward Position #: 5 Overlap #: 11 Alignment: ----CCMCKADYCVCDVVCCAGKGCRBVGSCRGVV GYRYCCMTKGGYRSC-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 89 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ccCCmCACCcc ssCGCCsCCrCCCss Original Motif Original Motif HBCCMCACCHH SSCGCCSCCGCCCSS SSCVCCCCCACCCBS Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---HBCCMCACCHH- SSCGCCSCCGCCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGsCwsCss Original Motif Original Motif SSCVCCCCCACCCBS BBCGSCWSCBB BBCGSCHSCVCCCBS Direction: Forward Position #: 1 Overlap #: 11 Alignment: SSCVCCCCCACCCBS BBCGSCWSCBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Reverse Complement Reverse Complement SBGGGBGSDGSCGBB BGRRRGRGGRTGRTTYGGGG BGRRRGRGGRTGRTBBGGGGGSDGSCGBB Direction: Forward Position #: 15 Overlap #: 6 Alignment: --------------SBGGGBGSDGSCGBB BGRRRGRGGRTGRTTYGGGG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- rrAGGGGGArr Combined Motif Reverse Complement Reverse Complement BBCGSCHSCCCCCVVAMCAMCCMCMMMCB VVTCCCCCTVV BBCGSCHVYCCCCCTMMCAMCCMCMMMCB Direction: Forward Position #: 7 Overlap #: 11 Alignment: BBCGSCHSCCCCCVVAMCAMCCMCMMMCB ------VVTCCCCCTVV------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Original Motif Original Motif BBCGSCHVYCCCCCTMMCAMCCMCMMMCB BBCRCCYCCGBB BBCGSCHVYCCCCCTMMCACCVCCMCCGBB Direction: Forward Position #: 19 Overlap #: 11 Alignment: BBCGSCHVYCCCCCTMMCAMCCMCMMMCB- ------------------BBCRCCYCCGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement BBCGGRGGVGGTGRYAGGGGGMVDGSCGBB GGYGCTGTCCATGGTGCTGAA GGYGCTGTCSDDGGBGSTGRHAGGGGGMVDGSCGBB Direction: Forward Position #: 7 Overlap #: 15 Alignment: ------BBCGGRGGVGGTGRYAGGGGGMVDGSCGBB GGYGCTGTCCATGGTGCTGAA--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGCTswGCCms Combined Motif Reverse Complement Reverse Complement BBCGSCHVYCCCCCTHKCASCVCCDDSGACAGCKCC BDGGCTSAGCBV BBCGSCHVYCCCCVDGGCWSMGCCDDSGACAGCKCC Direction: Forward Position #: 14 Overlap #: 12 Alignment: BBCGSCHVYCCCCCTHKCASCVCCDDSGACAGCKCC -------------BDGGCTSAGCBV----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 Combined Motif Reverse Complement Original Motif GGYGCTGTCSDHGGCYSWGCCDVGGGGMVDGSCGBB HGCGTGGGCGK GGYGCTGTCSDHGGCYSHGCGTGGGSGVVDGSCGBB Direction: Forward Position #: 18 Overlap #: 11 Alignment: GGYGCTGTCSDHGGCYSWGCCDVGGGGMVDGSCGBB -----------------HGCGTGGGCGK-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Reverse Complement Reverse Complement BBCGSCHVBCSCCCACGCHSMGCCDDSGACAGCKCC BBCGCCCSGCVV BBCGSCHVBCSCCCACGCHSMGCCVCGSMCAGCDCC Direction: Forward Position #: 24 Overlap #: 12 Alignment: BBCGSCHVBCSCCCACGCHSMGCCDDSGACAGCKCC -----------------------BBCGCCCSGCVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- INSM1 Combined Motif Original Motif Reverse Complement BBCGSCHVBCSCCCACGCHSMGCCVCGSMCAGCDCC MGCCCCCTGMCA BBCGSCHVBCSCCMRCSCCCWGCCACGSMCAGCDCC Direction: Forward Position #: 14 Overlap #: 12 Alignment: BBCGSCHVBCSCCCACGCHSMGCCVCGSMCAGCDCC -------------MGCCCCCTGMCA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 90 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGsCwsCss ssCrCYyYCGss Reverse Complement Reverse Complement BBGSWGSCGBB BBCGGKGGMGBB BBCGSDGGCGBB Direction: Forward Position #: 2 Overlap #: 11 Alignment: -BBGSWGSCGBB BBCGGKGGMGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Reverse Complement Original Motif BBCGCCDSCGBB HBCCMCACCHH VBCSCCACCBBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBCGCCDSCGBB HBCCMCACCHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss Combined Motif Reverse Complement Original Motif BBBGGTGGSGBV SSSCGSSGCSSS BBSSGBGGCGBB Direction: Forward Position #: 1 Overlap #: 12 Alignment: BBBGGTGGSGBV SSSCGSSGCSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCCsCCrCCCss Reverse Complement Original Motif BBCGCCVCSSBB SSCGCCSCCGCCCSS SSCGCCSCCGCCCSCCVCSSBB Direction: Forward Position #: 11 Overlap #: 5 Alignment: ----------BBCGCCVCSSBB SSCGCCSCCGCCCSS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 91 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Ar Original Motif Original Motif SSCGCCSCCGCCCSS HWDAGHACRHHVTGTHCCHVMV HWDAGVMCRCCSYSKCCCBVMV Direction: Backward Position #: 3 Overlap #: 15 Alignment: -----SSCGCCSCCGCCCSS-- HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Original Motif HWDAGVMCRCCSYSKCCCBVMV CCCCMAAMCAMCCMCMMMCV HWMMSCMMACCACCHMCCVVCV Direction: Forward Position #: 3 Overlap #: 20 Alignment: HWDAGVMCRCCSYSKCCCBVMV --CCCCMAAMCAMCCMCMMMCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif VGVVGGRDGGTGGTRYGSRRWH DGVBCABTGDWGCGKRRCSR VGVVGGRDGGDGVKVHVBGRWGCGKRRCSR Direction: Forward Position #: 11 Overlap #: 12 Alignment: VGVVGGRDGGTGGTRYGSRRWH-------- ----------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement VGVVGGRDGGDGVKVHVBGRWGCGKRRCSR BAGGYCABHBTGACCKHV VGVVGGRDGGDGVKVHVBVGDBCRBVVYGACCKHV Direction: Forward Position #: 18 Overlap #: 13 Alignment: VGVVGGRDGGDGVKVHVBGRWGCGKRRCSR----- -----------------BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif VHRGGTCMVBVKGVHCBBVHVRVCDCCHMCCVVCV VDBHMAGGTCACCCTGACCY VHRGGTCMVBVKGVHCBBVHVVVCVMSGHCMVCCHGACCY Direction: Forward Position #: 21 Overlap #: 15 Alignment: VHRGGTCMVBVKGVHCBBVHVRVCDCCHMCCVVCV----- --------------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif MGGTCHGGVYGHCSYBGVVVHVBVGDBCRBVVYGACCKHV BBVGCCBVGGCCTV MGGTCHGGVYGHCSYBGVVVHVBVGBBCRBCBHGGCCTDV Direction: Forward Position #: 26 Overlap #: 14 Alignment: MGGTCHGGVYGHCSYBGVVVHVBVGDBCRBVVYGACCKHV -------------------------BBVGCCBVGGCCTV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Reverse Complement MGGTCHGGVYGHCSYBGVVVHVBVGBBCRBCBHGGCCTDV CCCCCTTGGGCCCC MGGTCHGGVYGHCSYBGVVVHVBVGCCCCCYDVGGCCYCV Direction: Forward Position #: 26 Overlap #: 14 Alignment: MGGTCHGGVYGHCSYBGVVVHVBVGBBCRBCBHGGCCTDV -------------------------CCCCCTTGGGCCCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement MGGTCHGGVYGHCSYBGVVVHVBVGCCCCCYDVGGCCYCV TGRCCTKTGHCCKAB MGGTCHGGVYGHCSYBGVVVHVBVKSVCCYBTVSSCBHBV Direction: Forward Position #: 25 Overlap #: 15 Alignment: MGGTCHGGVYGHCSYBGVVVHVBVGCCCCCYDVGGCCYCV ------------------------TGRCCTKTGHCCKAB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Original Motif MGGTCHGGVYGHCSYBGVVVHVBVKSVCCYBTVSSCBHBV CCAGYYHVADCCRG MGGTCHGGVYGHCSYBGVVVHVBVKCCVSYTHVVVCCDGV Direction: Forward Position #: 26 Overlap #: 14 Alignment: MGGTCHGGVYGHCSYBGVVVHVBVKSVCCYBTVSSCBHBV -------------------------CCAGYYHVADCCRG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCwGGCCwGCss Combined Motif Reverse Complement Reverse Complement VCDGGVBVHAMSVGGRBBVHVVVCVMSGHCMVCCHGACCY BBGCTGGCCWGBB VCDGGVBVHAMSVGGRBBVHVVVCVHBGCYRSCCWGVCCY Direction: Forward Position #: 26 Overlap #: 13 Alignment: VCDGGVBVHAMSVGGRBBVHVVVCVMSGHCMVCCHGACCY -------------------------BBGCTGGCCWGBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 92 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tyTCTkTkTCyy yayAyAyACATrya Reverse Complement Original Motif VHGARAYAGAVV HACAYAYACATRHD HAHASAHACAKAHV Direction: Forward Position #: 3 Overlap #: 12 Alignment: --VHGARAYAGAVV HACAYAYACATRHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Reverse Complement Reverse Complement BDTYTGTHTSTDTD TGTGTGTGTGTG TGTBTGTGTGTGTD Direction: Forward Position #: 1 Overlap #: 12 Alignment: BDTYTGTHTSTDTD TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 93 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- rrAGGGGGArr ssCrCYyYCGss Reverse Complement Original Motif VVTCCCCCTVV BBCRCCYCCGBB VVYSCCCCYGVB Direction: Backward Position #: 2 Overlap #: 11 Alignment: VVTCCCCCTVV- BBCRCCYCCGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Original Motif Original Motif VVYSCCCCYGVB HBCCMCACCHH VVCCCCMCCVVB Direction: Forward Position #: 1 Overlap #: 11 Alignment: VVYSCCCCYGVB HBCCMCACCHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif INSM1 Original Motif Reverse Complement VVCCCCMCCVVB MGCCCCCTGMCA MBCCCCCYBVCV Direction: Forward Position #: 1 Overlap #: 12 Alignment: VVCCCCMCCVVB MGCCCCCTGMCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Original Motif MBCCCCCYBVCV CCCCMAAMCAMCCMCMMMCV CCCCMAAMCAMCCMCCCCCMYBVCV Direction: Forward Position #: 14 Overlap #: 7 Alignment: -------------MBCCCCCYBVCV CCCCMAAMCAMCCMCMMMCV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Original Motif CCCCMAAMCAMCCMCCCCCMYBVCV SSCGCCSCCGCCCSS CCCCMAAMCAMCCMVCCVCCCCCVCCCSS Direction: Forward Position #: 15 Overlap #: 11 Alignment: CCCCMAAMCAMCCMCCCCCMYBVCV---- --------------SSCGCCSCCGCCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 Combined Motif Reverse Complement Original Motif SSGGGVGGGGGVGGVRGGRTGRTTYGGGG HGCGTGGGCGK SSGGGVGGGDGCGKGGGSGTGRTTYGGGG Direction: Forward Position #: 10 Overlap #: 11 Alignment: SSGGGVGGGGGVGGVRGGRTGRTTYGGGG ---------HGCGTGGGCGK--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Reverse Complement Reverse Complement CCCCMAAMCACSCCCRCGCHCCCVCCCSS BBCGCCCSGCVV CCCCMAAMCACSCCCRCSCCGCCCCSCVV Direction: Forward Position #: 18 Overlap #: 12 Alignment: CCCCMAAMCACSCCCRCGCHCCCVCCCSS -----------------BBCGCCCSGCVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 94 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCksCGss ssCKCwsCGss Original Motif Original Motif VVCGCKSCGBB BVCGCWSCGBV BVCGCTSCGBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: VVCGCKSCGBB BVCGCWSCGBV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sssCGssGCsss Reverse Complement Reverse Complement BBCGSAGCGVB SSSGCSSCGSSS SSSGCSSCGSCGSAGCGVB Direction: Forward Position #: 9 Overlap #: 4 Alignment: --------BBCGSAGCGVB SSSGCSSCGSSS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGGsYCGss Combined Motif Reverse Complement Original Motif BVCGCTSCGSCGSSGCSSS BSCGGSCCGSV BVCGCBCSGSCSGSGCSSS Direction: Forward Position #: 5 Overlap #: 11 Alignment: BVCGCTSCGSCGSSGCSSS ----BSCGGSCCGSV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Reverse Complement Original Motif SSSGCSCSGSCSGVGCGVB VVGCSGGGCGBB SSSGSGCSGGSCGVGCGVB Direction: Forward Position #: 4 Overlap #: 12 Alignment: SSSGCSCSGSCSGVGCGVB ---VVGCSGGGCGBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGCTswGCCms Combined Motif Original Motif Original Motif SSSGSGCSGGSCGVGCGVB VBGCTSAGCCHB SSSVVGCKGDGCSVBCGVB Direction: Forward Position #: 4 Overlap #: 12 Alignment: SSSGSGCSGGSCGVGCGVB ---VBGCTSAGCCHB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Original Motif Reverse Complement SSSVVGCKGDGCSVBCGVB BBCGGKGGMGBB SSSVBSSKGGGCGVBCGVB Direction: Forward Position #: 4 Overlap #: 12 Alignment: SSSVVGCKGDGCSVBCGVB ---BBCGGKGGMGBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Reverse Complement Original Motif BVCGBVCGCCCYSSBVSSS SSCGCCSCCGCCCSS BVCGCGCSCCCBCCCBSSS Direction: Forward Position #: 3 Overlap #: 15 Alignment: BVCGBVCGCCCYSSBVSSS --SSCGCCSCCGCCCSS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGsCwsCss Combined Motif Original Motif Original Motif BVCGCGCSCCCBCCCBSSS BBCGSCWSCBB BVCGCVCGSCHSCSBBSSS Direction: Forward Position #: 5 Overlap #: 11 Alignment: BVCGCGCSCCCBCCCBSSS ----BBCGSCWSCBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif SSSBBSGSDGSCGVGCGVB DGVBCABTGDWGCGKRRCSR SSSBBSGSDGVSSVBYGVDGCGKRRCSR Direction: Forward Position #: 9 Overlap #: 11 Alignment: SSSBBSGSDGSCGVGCGVB--------- --------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif MSGKKRCGCDBCKBBSSVCHSCSBBSSS BBVGCCBVGGCCTV MSGKKRCGCDBCKBBSSVCVSCBVGGCCTV Direction: Forward Position #: 17 Overlap #: 12 Alignment: MSGKKRCGCDBCKBBSSVCHSCSBBSSS-- ----------------BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 95 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACACACACACA CACACACACACA Original Motif Original Motif CACACACACACA CACACACACACA CACACACACACA Direction: Backward Position #: 1 Overlap #: 12 Alignment: CACACACACACA CACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Reverse Complement Reverse Complement TGTGTGTGTGTG TGTGTGTGTGTKTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGTG-- TGTGTGTGTGTKTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Reverse Complement Original Motif CACACACACACACA CACACAVRCACACA CACACACACACACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACACACACACA CACACAVRCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Original Motif Original Motif CACACACACACACA HACAYAYACATRHD CACACACACAYACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: CACACACACACACA HACAYAYACATRHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Original Motif Original Motif CACACACACAYACA DHAYAYAYRTGTGTRTDH DYAYACAYAYRTRYRTDH Direction: Forward Position #: 2 Overlap #: 14 Alignment: -CACACACACAYACA--- DHAYAYAYRTGTGTRTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Reverse Complement DYAYACAYAYRTRYRTDH VHGARAYAGAVV VHGAVAYASAHVTRYRTDH Direction: Forward Position #: 2 Overlap #: 11 Alignment: -DYAYACAYAYRTRYRTDH VHGARAYAGAVV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAAAAAAAAAA Combined Motif Original Motif Original Motif VHGAVAYASAHVTRYRTDH HVCATGCATGCABD VHBACAYRCATRYAYRTDH Direction: Forward Position #: 3 Overlap #: 14 Alignment: VHGAVAYASAHVTRYRTDH --HVCATGCATGCABD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RREB1 Original Motif Original Motif VHBACAYRCATRYAYRTDH CCCCMAAMCAMCCMCMMMCV CCCCMAVMCAYMCAYVCMBVTDH Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----VHBACAYRCATRYAYRTDH CCCCMAAMCAMCCMCMMMCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Reverse Complement Original Motif HDABBYGBKTGRKTGYBTYGGGG TKKTTTGTTTTTTT WKDTTTGHKTKDKTGYBTYGGGG Direction: Forward Position #: 1 Overlap #: 14 Alignment: HDABBYGBKTGRKTGYBTYGGGG TKKTTTGTTTTTTT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yrTGTGCACAyr Reverse Complement Reverse Complement CCCCMAVMCARDRARHCAAADRW BBTGTGCACAVV BBTGTSCMCAMVMCARDRARHCAAADRW Direction: Forward Position #: 6 Overlap #: 7 Alignment: -----CCCCMAVMCARDRARHCAAADRW BBTGTGCACAVV---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 96 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yrTGTGCACAyr wrTGTATACAyw Original Motif Original Motif BVTGTGCACABV HDTGTATACAHD HVTGTRYACABD Direction: Backward Position #: 1 Overlap #: 12 Alignment: BVTGTGCACABV HDTGTATACAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Original Motif Reverse Complement HVTGTRYACABD VRVDGGHACAVDDKGTHCTDWH BRTGKGYACAVDDKGTHCTDWH Direction: Forward Position #: 1 Overlap #: 12 Alignment: HVTGTRYACABD---------- VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yayAyAyACATrya Combined Motif Original Motif Original Motif BRTGKGYACAVDDKGTHCTDWH HACAYAYACATRHD BRHDYRYACACATDGWHCTDWH Direction: Forward Position #: 3 Overlap #: 14 Alignment: BRTGKGYACAVDDKGTHCTDWH --HACAYAYACATRHD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAAAAAAAAAA Combined Motif Original Motif Original Motif BRHDYRYACACATDGWHCTDWH HVCATGCATGCABD BRHDBRCAYRCATGSAHCTDWH Direction: Forward Position #: 5 Overlap #: 14 Alignment: BRHDYRYACACATDGWHCTDWH ----HVCATGCATGCABD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif HWDAGHTSCATGKMTGKVHHKB BTRGGDCARAGGKCA HWDAVHDGVDYRDAKGKVAHKB Direction: Forward Position #: 5 Overlap #: 15 Alignment: HWDAGHTSCATGKMTGKVHHKB ----BTRGGDCARAGGKCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Reverse Complement Reverse Complement BRHTVRCYTHKMDVCDHVTDWH DBTGCACTGGVD BDTKCACTKVDVDVCDHVTDWH Direction: Forward Position #: 1 Overlap #: 12 Alignment: BRHTVRCYTHKMDVCDHVTDWH DBTGCACTGGVD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement BDTKCACTKVDVDVCDHVTDWH TGTGTGTGTGTG TGTGTGTGTGTGCACTKVDVDVCDHVTDWH Direction: Forward Position #: 9 Overlap #: 4 Alignment: --------BDTKCACTKVDVDVCDHVTDWH TGTGTGTGTGTG------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACACACACACA Combined Motif Original Motif Reverse Complement TGTGTGTGTGTGCACTKVDVDVCDHVTDWH TGTGTGTGTGTG TGTGTGTGTGTGYRYKKGDVDVCDHVTDWH Direction: Forward Position #: 7 Overlap #: 12 Alignment: TGTGTGTGTGTGCACTKVDVDVCDHVTDWH ------TGTGTGTGTGTG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif TGTGTGTGTGTGYRYKKGDVDVCDHVTDWH VDBHMAGGTCACCCTGACCY TGTGTGTGTGTGYRYKKVDVBVVGGBYAHHCTGACCY Direction: Forward Position #: 18 Overlap #: 13 Alignment: TGTGTGTGTGTGYRYKKGDVDVCDHVTDWH------- -----------------VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCwGGCCwGCss Combined Motif Reverse Complement Original Motif MGGTCAGDDTKVCCBVVVHVRYMMMCACACACACACA BBCWGGCCAGCBB MGGTCAGDDTKVVHCDGGCCAGMVVCACACACACACA Direction: Forward Position #: 13 Overlap #: 13 Alignment: MGGTCAGDDTKVCCBVVVHVRYMMMCACACACACACA ------------BBCWGGCCAGCBB------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 97 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Ar Reverse Complement Reverse Complement HDAMACACAKKTKTKTHD VRVDGGHACAVDDKGTHCTDWH VRVVKRHACACDKKKKTBTHDH Direction: Backward Position #: 2 Overlap #: 18 Alignment: ---HDAMACACAKKTKTKTHD- VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement VRVVKRHACACDKKKKTBTHDH MSGKKRCGCWDCABTGBBCD VRVVKRHACAMVGKKDYBYDDHABTGBBCD Direction: Forward Position #: 11 Overlap #: 12 Alignment: VRVVKRHACACDKKKKTBTHDH-------- ----------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfp423 Combined Motif Reverse Complement Reverse Complement HGVBCABTDDDKBKDRRCVRTGTDMYBVMV GYRYCCMTKGGYRSC HGVGCRYCCHWKGGHRVCVRTGTDMYBVMV Direction: Forward Position #: 4 Overlap #: 15 Alignment: HGVBCABTDDDKBKDRRCVRTGTDMYBVMV ---GYRYCCMTKGGYRSC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Original Motif HGVGCRYCCHWKGGHRVCVRTGTDMYBVMV TGAMCTTTGMMCYT HGVGCRYCCHWKGKGAMCHDTGHVCYBVMV Direction: Forward Position #: 14 Overlap #: 14 Alignment: HGVGCRYCCHWKGGHRVCVRTGTDMYBVMV -------------TGAMCTTTGMMCYT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif HGVGCRYCCHWKGKGAMCHDTGHVCYBVMV BTRGGDCARAGGKCA HGVGCRYCCHWKGKGAMCBBDGDDCADAVGKCA Direction: Forward Position #: 19 Overlap #: 12 Alignment: HGVGCRYCCHWKGKGAMCHDTGHVCYBVMV--- ------------------BTRGGDCARAGGKCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- yayAyAyACATrya Combined Motif Original Motif Reverse Complement HGVGCRYCCHWKGKGAMCBBDGDDCADAVGKCA DHKATGTKTKTGTD HGVGCRYYVDATGTKDBYKTDGDDCADAVGKCA Direction: Forward Position #: 8 Overlap #: 14 Alignment: HGVGCRYCCHWKGKGAMCBBDGDDCADAVGKCA -------DHKATGTKTKTGTD------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAAAAAAAAAA Combined Motif Original Motif Reverse Complement HGVGCRYYVDATGTKDBYKTDGDDCADAVGKCA DVTGCATGCATGBH HGVGCRYYVDHTGHDTGCDTGGDDCADAVGKCA Direction: Forward Position #: 10 Overlap #: 14 Alignment: HGVGCRYYVDATGTKDBYKTDGDDCADAVGKCA ---------DVTGCATGCATGBH---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Original Motif Reverse Complement HGVGCRYYVDHTGHDTGCDTGGDDCADAVGKCA TGTGTGTGTGTKTG HGVGCRYTGTGTGTGTGYDTGGDDCADAVGKCA Direction: Forward Position #: 8 Overlap #: 14 Alignment: HGVGCRYYVDHTGHDTGCDTGGDDCADAVGKCA -------TGTGTGTGTGTKTG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 25 Combined Motif Reverse Complement Original Motif TGRCVTDTGHHCCAHMCACACACACAKKGCBCD CACACAVRCACACA TGRCVTDTGHCACACACACACACACAKKGCBCD Direction: Forward Position #: 11 Overlap #: 14 Alignment: TGRCVTDTGHHCCAHMCACACACACAKKGCBCD ----------CACACAVRCACACA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Original Motif Original Motif TGRCVTDTGHCACACACACACACACAKKGCBCD CCCCMAAMCAMCCMCMMMCV TGRCVTDTGHCMCMMAMACACMCMCMVHSVBCD Direction: Forward Position #: 11 Overlap #: 20 Alignment: TGRCVTDTGHCACACACACACACACAKKGCBCD ----------CCCCMAAMCAMCCMCMMMCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 98 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwTAATTAATTAww yayAyAyACATrya Original Motif Original Motif HDTAATTAATTAHD HACAYAYACATRHD HDYAHWTAMWTAHD Direction: Forward Position #: 1 Overlap #: 14 Alignment: HDTAATTAATTAHD HACAYAYACATRHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Original Motif HDYAHWTAMWTAHD HVCATGCATGCABD HDYATRYAHDYAHD Direction: Forward Position #: 1 Overlap #: 14 Alignment: HDYAHWTAMWTAHD HVCATGCATGCABD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 26 Reverse Complement Original Motif DHTKHHTKMATKDH TKKTTTGTTTTTTT TKKTTTGTTTTTTTHHTKMATKDH Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------DHTKHHTKMATKDH TKKTTTGTTTTTTT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wrTGTATACAyw Reverse Complement Original Motif HDYATRYAHDAAAAAAACAAARRA HDTGTATACAHD HDYRTAYAYADAAAAAACAAARRA Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDYATRYAHDAAAAAAACAAARRA HDTGTATACAHD------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wtTTWwAAAaw Combined Motif Reverse Complement Reverse Complement TKKTTTGTTTTTTDTKTMTAKMDH DDTTTWAAAHH TKKTTTBHTTTWWAWDTMTAKMDH Direction: Forward Position #: 7 Overlap #: 11 Alignment: TKKTTTGTTTTTTDTKTMTAKMDH ------DDTTTWAAAHH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wtATTTTTAww Combined Motif Original Motif Original Motif TKKTTTBHTTTWWAWDTMTAKMDH DHATTTTTADD TKKTTTDHWTTTTTADDMTAKMDH Direction: Forward Position #: 7 Overlap #: 11 Alignment: TKKTTTBHTTTWWAWDTMTAKMDH ------DHATTTTTADD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAAAAAAAAAA Combined Motif Original Motif Reverse Complement TKKTTTDHWTTTTTADDMTAKMDH TTTTTTTTTTT TKKTTTTTTTTTTTWTTMTAKMDH Direction: Forward Position #: 7 Overlap #: 11 Alignment: TKKTTTDHWTTTTTADDMTAKMDH ------TTTTTTTTTTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwTAAAwAww Combined Motif Reverse Complement Original Motif HDYRTAYAAWAAAAAAAAAAARRA DDTAAAWAHH HDYRTAYDDTAAAAAWHAAAARRA Direction: Forward Position #: 8 Overlap #: 10 Alignment: HDYRTAYAAWAAAAAAAAAAARRA -------DDTAAAWAHH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwTAAwAAww Combined Motif Original Motif Original Motif HDYRTAYDDTAAAAAWHAAAARRA DDTAAWAAHH HDYRTAYDDTAAAAAHHAAAARRA Direction: Forward Position #: 8 Overlap #: 10 Alignment: HDYRTAYDDTAAAAAWHAAAARRA -------DDTAAWAAHH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Original Motif Reverse Complement HDYRTAYDDTAAAAAHHAAAARRA DBTATGTAHH HDTATGTAHTAAAAAHHAAAARRA Direction: Forward Position #: 1 Overlap #: 10 Alignment: HDYRTAYDDTAAAAAHHAAAARRA DBTATGTAHH-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 99 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sgCTGGCCAGcs ssCwGGCCwGCss Reverse Complement Reverse Complement VVCTGGCCAGBB BBGCTGGCCWGBB BVGCTGGCCAGBB Direction: Forward Position #: 2 Overlap #: 12 Alignment: -VVCTGGCCAGBB BBGCTGGCCWGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Original Motif BVGCTGGCCAGBB VDBHMAGGTCACCCTGACCY VBBBCWGGYCAGBBTGACCY Direction: Forward Position #: 2 Overlap #: 13 Alignment: -BVGCTGGCCAGBB------ VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement VBBBCWGGYCAGBBTGACCY GGYGCTGTCCATGGTGCTGAA GVHBCTGKCCABGGTGMYSHA Direction: Forward Position #: 1 Overlap #: 20 Alignment: VBBBCWGGYCAGBBTGACCY- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Reverse Complement Original Motif THSMRCACCBTGGYCAGBDVC BBCRCCYCCGBB THSMVCRCCHYSGYCAGBDVC Direction: Forward Position #: 4 Overlap #: 12 Alignment: THSMRCACCBTGGYCAGBDVC ---BBCRCCYCCGBB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Reverse Complement Original Motif GVHBCTGKCSMDGGKGVRSHA HWDAGHACRHHVTGTHCCHVMV HWDAGHACRHHVTGTHCCVVHVCTGKCSMDGGKGVRSHA Direction: Forward Position #: 19 Overlap #: 4 Alignment: ------------------GVHBCTGKCSMDGGKGVRSHA HWDAGHACRHHVTGTHCCHVMV----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss Combined Motif Original Motif Reverse Complement HWDAGHACRHHVTGTHCCVVHVCTGKCSMDGGKGVRSHA SSSGCSSCGSSS HWDAGHACRHHVTGTHCCVVHVCTGBCSVCGGYGSVSHA Direction: Forward Position #: 26 Overlap #: 12 Alignment: HWDAGHACRHHVTGTHCCVVHVCTGKCSMDGGKGVRSHA -------------------------SSSGCSSCGSSS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif HWDAGHACRHHVTGTHCCVVHVCTGBCSVCGGYGSVSHA DGVBCABTGDWGCGKRRCSR HWDAGHACRHHVTGTHCCVVHVVDVBCVVYGVHGCGBVRCSR Direction: Forward Position #: 23 Overlap #: 17 Alignment: HWDAGHACRHHVTGTHCCVVHVCTGBCSVCGGYGSVSHA--- ----------------------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Original Motif Reverse Complement HWDAGHACRHHVTGTHCCVVHVVDVBCVVYGVHGCGBVRCSR BBCGCCCSGCVV HWDAGHACRHHVTGTHCCVVHVVDVBCVVCGCHSCGCVVCSR Direction: Forward Position #: 28 Overlap #: 12 Alignment: HWDAGHACRHHVTGTHCCVVHVVDVBCVVYGVHGCGBVRCSR ---------------------------BBCGCCCSGCVV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Reverse Complement MSGBBGCGSDGCGVVGBVHVVDVVGGHACAVDDKGTHCTDWH DVTGCATGCATGBH DVTGCATGCABGBHGCGSDGCGVVGBVHVVDVVGGHACAVDDKGTHCTDWH Direction: Forward Position #: 10 Overlap #: 5 Alignment: ---------MSGBBGCGSDGCGVVGBVHVVDVVGGHACAVDDKGTHCTDWH DVTGCATGCATGBH------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGGsYCGss Combined Motif Original Motif Original Motif DVTGCATGCABGBHGCGSDGCGVVGBVHVVDVVGGHACAVDDKGTHCTDWH BSCGGSCCGSV DVTGCATGCABGBHGCGSDGCSVCGGSYCGVVVGGHACAVDDKGTHCTDWH Direction: Forward Position #: 22 Overlap #: 11 Alignment: DVTGCATGCABGBHGCGSDGCGVVGBVHVVDVVGGHACAVDDKGTHCTDWH ---------------------BSCGGSCCGSV------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 100 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wrTGTATACAyw yrTGTGCACAyr Original Motif Original Motif HDTGTATACAHD BVTGTGCACABV HVTGTRYACABD Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDTGTATACAHD BVTGTGCACABV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Reverse Complement HVTGTRYACABD DVTGCATGCATGBH BVTGYATRCATGBH Direction: Forward Position #: 1 Overlap #: 12 Alignment: HVTGTRYACABD-- DVTGCATGCATGBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Original Motif Original Motif BVTGYATRCATGBH HACAYAYACATRHD BVYRYAYACATRBV Direction: Forward Position #: 1 Overlap #: 14 Alignment: BVTGYATRCATGBH HACAYAYACATRHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Original Motif Original Motif BVYRYAYACATRBV HWDAGHACRHHVTGTHCCHVMV HWDAGHACRHHVTGTHCHYRYVYACATRBV Direction: Forward Position #: 17 Overlap #: 6 Alignment: ----------------BVYRYAYACATRBV HWDAGHACRHHVTGTHCCHVMV-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Reverse Complement HWDAGHACRHHVTGTHCHYRYVYACATRBV VHGARAYAGAVV VHGARRHASAHHVTGTHCHYRYVYACATRBV Direction: Forward Position #: 2 Overlap #: 11 Alignment: -HWDAGHACRHHVTGTHCHYRYVYACATRBV VHGARAYAGAVV------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCAGTGCAbr Original Motif Original Motif VHGARRHASAHHVTGTHCHYRYVYACATRBV HVCCAGTGCABD HHSMAGTRCAHHVTGTHCHYRYVYACATRBV Direction: Forward Position #: 1 Overlap #: 12 Alignment: VHGARRHASAHHVTGTHCHYRYVYACATRBV HVCCAGTGCABD------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Original Motif HHSMAGTRCAHHVTGTHCHYRYVYACATRBV CACACACACACA HACAMRYACACAVTGTHCHYRYVYACATRBV Direction: Forward Position #: 1 Overlap #: 12 Alignment: HHSMAGTRCAHHVTGTHCHYRYVYACATRBV CACACACACACA------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAATTAATTAww Reverse Complement Reverse Complement BVMATGTMBKMMDGHACAVTGTGTKKRTGTD DHTAATTAATTADH HHYAWKTADTHADDHACAVTGTGTKKRTGTD Direction: Forward Position #: 1 Overlap #: 14 Alignment: BVMATGTMBKMMDGHACAVTGTGTKKRTGTD DHTAATTAATTADH----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Combined Motif Original Motif Reverse Complement HHYAWKTADTHADDHACAVTGTGTKKRTGTD HDAMACACAKKTKTKTHD HHYAWKTAHKHMAVAMMDBTGTGTDKRTGTD Direction: Forward Position #: 9 Overlap #: 18 Alignment: HHYAWKTADTHADDHACAVTGTGTKKRTGTD --------HDAMACACAKKTKTKTHD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif HACAMRHACACABDRYTVTYHRHTARWTMHH TTCAGCACCATGGACAGCKCC TTCAGCACCATGGACAGVDVCACABDRYTVTYHRHTARWTMHH Direction: Forward Position #: 13 Overlap #: 9 Alignment: ------------HACAMRHACACABDRYTVTYHRHTARWTMHH TTCAGCACCATGGACAGCKCC---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 101 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAAAAAAAAAA yayAyAyACATrya Original Motif Original Motif HVCATGCATGCABD HACAYAYACATRHD HDCATRCAYRYAHD Direction: Backward Position #: 1 Overlap #: 14 Alignment: HVCATGCATGCABD HACAYAYACATRHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Original Motif Original Motif HDCATRCAYRYAHD DHAYAYAYRTGTGTRTDH DHACAYAYAYRTRTRTDH Direction: Forward Position #: 2 Overlap #: 14 Alignment: -HDCATRCAYRYAHD--- DHAYAYAYRTGTGTRTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement HDAKAKAMMTKTMTGTHD MSGKKRCGCWDCABTGBBCD MBRKDDMVCTKBMTKKHBCD Direction: Forward Position #: 1 Overlap #: 18 Alignment: HDAKAKAMMTKTMTGTHD-- MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 102 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAAAAAAAAAA Motif 26 Original Motif Reverse Complement AAAAAAAAAAA AAAAAAACAAARRA AAAAAAAMAAAAAA Direction: Backward Position #: 2 Overlap #: 11 Alignment: --AAAAAAAAAAA- AAAAAAACAAARRA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- aaACAAAACaa Combined Motif Reverse Complement Reverse Complement TTTTTTYTTTTTTT TTGTTTTGTTT TTTKTTTTKTTTTT Direction: Forward Position #: 2 Overlap #: 11 Alignment: TTTTTTYTTTTTTT -TTGTTTTGTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- aaCAAAAACaa Combined Motif Original Motif Reverse Complement TTTKTTTTKTTTTT HTGTTTTTGHH TTTGTTTTTKTTTT Direction: Forward Position #: 2 Overlap #: 11 Alignment: TTTKTTTTKTTTTT -HTGTTTTTGHH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Original Motif TTTGTTTTTKTTTT DHATTTTTADD THAKTTTTWDDTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTTGTTTTTKTTTT DHATTTTTADD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tyTCTkTkTCyy Combined Motif Reverse Complement Reverse Complement AAADDWAAAARTHA VHGARAYAGAVV AAHHGAAAMAGAVA Direction: Forward Position #: 3 Overlap #: 12 Alignment: AAADDWAAAARTHA --VHGARAYAGAVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Reverse Complement Reverse Complement TBTCTYTTTCHHTT TGTGTGTGTGTG TBTSTBTKTSTBTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: TBTCTYTTTCHHTT TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement TBTSTBTKTSTBTT TGTGTGTGTGTG TGTGTGTGTGTGTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: TBTSTBTKTSTBTT TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Original Motif Reverse Complement TGTGTGTGTGTGTT DHKATGTKTKTGTD TVTRTGTKTGTGTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGTGTGTGTGTGTT DHKATGTKTKTGTD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Reverse Complement Original Motif AACACAYACAKAVA HHTTTWAAADD HHTTTAAMAHAYACAKAVA Direction: Forward Position #: 6 Overlap #: 6 Alignment: -----AACACAYACAKAVA HHTTTWAAADD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ryayAyAyrtGTRTrTry Combined Motif Original Motif Original Motif HHTTTAAMAHAYACAKAVA DHAYAYAYRTGTGTRTDH DHWTWHAHAHRTRYATRHA Direction: Forward Position #: 1 Overlap #: 18 Alignment: HHTTTAAMAHAYACAKAVA DHAYAYAYRTGTGTRTDH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 103 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ccCCAGTGCAbr ESR1 Original Motif Original Motif HVCCAGTGCABD VDBHMAGGTCACCCTGACCY VBBCCAGKKCABHCTGACCY Direction: Backward Position #: 8 Overlap #: 12 Alignment: -HVCCAGTGCABD------- VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Ar Original Motif Original Motif VBBCCAGKKCABHCTGACCY HWDAGHACRHHVTGTHCCHVMV HWDAGHACRHHVTGTHCCVVHCCAGKKCABHCTGACCY Direction: Forward Position #: 19 Overlap #: 4 Alignment: ------------------VBBCCAGKKCABHCTGACCY HWDAGHACRHHVTGTHCCHVMV---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCTswGCCms Reverse Complement Reverse Complement MGGTCAGDBTGYRCTGGDVVGGHACAVDDKGTHCTDWH BDGGCTSAGCBV BDRGSTCAGCBTGYRCTGGDVVGGHACAVDDKGTHCTDWH Direction: Forward Position #: 3 Overlap #: 10 Alignment: --MGGTCAGDBTGYRCTGGDVVGGHACAVDDKGTHCTDWH BDGGCTSAGCBV---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Reverse Complement Original Motif HWDAGHACRHHVTGTHCCVVHCCAGKKCABGCTGASCMHB VVGCSGGGCGBB HWDAGHACRHHVTGTHCCVVHCCAGKKCVBGCKGRGCGVB Direction: Forward Position #: 29 Overlap #: 12 Alignment: HWDAGHACRHHVTGTHCCVVHCCAGKKCABGCTGASCMHB ----------------------------VVGCSGGGCGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCwGGCCwGCss Combined Motif Reverse Complement Reverse Complement BVCGCKCRGCBBGYRCTGGDVVGGHACAVDDKGTHCTDWH BBGCTGGCCWGBB BVCGCKCRGCBBGBGCTGGCCHGGHACAVDDKGTHCTDWH Direction: Forward Position #: 13 Overlap #: 13 Alignment: BVCGCKCRGCBBGYRCTGGDVVGGHACAVDDKGTHCTDWH ------------BBGCTGGCCWGBB--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss Combined Motif Reverse Complement Original Motif HWDAGHACRHHVTGTHCCHGGCCAGCBCVBGCKGRGCGVB SSSCGSSGCSSS HWDAGHACRHHVTGTHCCHGGCCAGCBSSCGCBGVSCSVB Direction: Forward Position #: 27 Overlap #: 12 Alignment: HWDAGHACRHHVTGTHCCHGGCCAGCBCVBGCKGRGCGVB --------------------------SSSCGSSGCSSS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif HWDAGHACRHHVTGTHCCHGGCCAGCBSSCGCBGVSCSVB BTRGGDCARAGGKCA HWDAGHACRHHVTGTHCCHGGCCAGCBBVSGVSRVRSGBBA Direction: Forward Position #: 27 Overlap #: 14 Alignment: HWDAGHACRHHVTGTHCCHGGCCAGCBSSCGCBGVSCSVB- --------------------------BTRGGDCARAGGKCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Reverse Complement TBVCSKBKSVCSVVBGCTGGCCHGGHACAVDDKGTHCTDWH GGYGCTGTCCATGGTGCTGAA TBVCSKBKSVCSVVBGCTGKCCHKGGWSMBGDDGTHCTDWH Direction: Forward Position #: 13 Overlap #: 21 Alignment: TBVCSKBKSVCSVVBGCTGGCCHGGHACAVDDKGTHCTDWH ------------GGYGCTGTCCATGGTGCTGAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCrCYyYCGss Combined Motif Reverse Complement Reverse Complement HWDAGHACDDCVRSWCCYHGGRCAGCBVVSGVSRVRSGBBA BBCGGKGGMGBB HWDAGHACDDCVRSWCCYHGGRCAGCBVCGGBSGMGSGBBA Direction: Forward Position #: 27 Overlap #: 12 Alignment: HWDAGHACDDCVRSWCCYHGGRCAGCBVVSGVSRVRSGBBA --------------------------BBCGGKGGMGBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif HWDAGHACDDCVRSWCCYHGGRCAGCBVCGGBSGMGSGBBA DGVBCABTGDWGCGKRRCSR HWDAGHACDDCVRSWCCYHGGRCAGVGVBSDBBGVRGSGBARCSR Direction: Forward Position #: 26 Overlap #: 16 Alignment: HWDAGHACDDCVRSWCCYHGGRCAGCBVCGGBSGMGSGBBA---- -------------------------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 104 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wtTTWwAAAaw wtATTTTTAww Original Motif Reverse Complement HHTTTWAAADD DDTAAAAATHD HHTWWAAAWHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHTTTWAAADD DDTAAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wrTGTATACAyw Original Motif Reverse Complement HHTWWAAAWHD DHTGTATACADH DHTDWAWAHADH Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHTWWAAAWHD- DHTGTATACADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAATTAATTAww Reverse Complement Original Motif HDTDTWTWHAHD HDTAATTAATTAHD HDTAATTAATTAHDTWTWHAHD Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------HDTDTWTWHAHD HDTAATTAATTAHD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAAAAAAAAAA Combined Motif Reverse Complement Original Motif DHTDWAWADHTAATTAATTADH AAAAAAAAAAA DHTDWAAAAAWAAWWAATTADH Direction: Forward Position #: 6 Overlap #: 11 Alignment: DHTDWAWADHTAATTAATTADH -----AAAAAAAAAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Original Motif Original Motif DHTDWAAAAAWAAWWAATTADH HHCAAAAACAH HHYAAAAAMAAAAWWAATTADH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHTDWAAAAAWAAWWAATTADH HHCAAAAACAH----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yrTGTGCACAyr Original Motif Original Motif HHYAAAAAMAAAAWWAATTADH BVTGTGCACABV HVTRWRMACAHAAWWAATTADH Direction: Forward Position #: 1 Overlap #: 12 Alignment: HHYAAAAAMAAAAWWAATTADH BVTGTGCACABV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Original Motif Reverse Complement HVTRWRMACAHAAWWAATTADH AAAAAAACAAARRA HVTRWRAAMAHVAAWAAWTADH Direction: Forward Position #: 5 Overlap #: 14 Alignment: HVTRWRMACAHAAWWAATTADH ----AAAAAAACAAARRA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ar Combined Motif Original Motif Reverse Complement HVTRWRAAMAHVAAWAAWTADH VRVDGGHACAVDDKGTHCTDWH VRYDDRHACAVVAWRWHYTADH Direction: Forward Position #: 1 Overlap #: 22 Alignment: HVTRWRAAMAHVAAWAAWTADH VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Original Motif Original Motif VRYDDRHACAVVAWRWHYTADH AAACAAAACAA VVACAAAACAVVAWRWHYTADH Direction: Forward Position #: 1 Overlap #: 11 Alignment: VRYDDRHACAVVAWRWHYTADH AAACAAAACAA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif HDTAKHWMWTVBTGTTTTGTBB TGAMCTTTGMMCYT TGAMCTTWGHHCHTVBTGTTTTGTBB Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----HDTAKHWMWTVBTGTTTTGTBB TGAMCTTTGMMCYT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-20-2016 23:29:46 Runtime: 1002.53 seconds MOTIFSIM is written by Ngoc Tam L. Tran