**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.1 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 5 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Phylogenetic tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # MEME_DM05.txt 46 1 MEME-ChIP_DM05.txt 4 2 PScanChIP_DM05.txt 16 3 RSAT_peak-motifs_DM05.txt 17 4 W-ChIPMotifs_DM05.txt 11 5 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches in Database for Each Motif (Highest to Lowest) ***************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Consensus sequence (original motif): CYTSCCTCTGC Consensus sequence (reverse complement motif): GCAGAGGSAKG ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Original Motif Original Motif Backward 3 11 0.0313012 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: HBBBCCGCCCCWHHHV ---CYTSCCTCTGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Original Motif Original Motif Backward 3 11 0.0317134 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH ----CYTSCCTCTGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_secondary Original Motif Original Motif Forward 5 11 0.0322746 Species: Mus musculus Consensus sequence (original motif): CYDBYWTCCSMHBVVH Consensus sequence (reverse complement motif): DBVVDRSGGAWKVHKG Alignment: CYDBYWTCCSMHBVVH ----CYTSCCTCTGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_secondary Original Motif Reverse Complement Backward 5 11 0.0336419 Species: Mus musculus Consensus sequence (original motif): DTWGCCKSMGGCRHH Consensus sequence (reverse complement motif): HHKGCCYSRGGCWAD Alignment: HHKGCCYSRGGCWAD CYTSCCTCTGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Reverse Complement Reverse Complement Backward 2 11 0.0343277 Species: Mus musculus Consensus sequence (original motif): BBYVVCAGCTGCBVHHD Consensus sequence (reverse complement motif): HHDVVGCAGCTGVBKVB Alignment: HHDVVGCAGCTGVBKVB -----GCAGAGGSAKG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00096 Sox13_secondary Original Motif Reverse Complement Backward 1 11 0.0359879 Species: Mus musculus Consensus sequence (original motif): DDDHTGGGTGGGHAHHD Consensus sequence (reverse complement motif): DHHTHCCCACCCAHDDH Alignment: DDDHTGGGTGGGHAHHD ------CYTSCCTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00085 Sfpi1_primary Original Motif Reverse Complement Forward 4 11 0.036078 Species: Mus musculus Consensus sequence (original motif): BDAWGVGGAAGTDH Consensus sequence (reverse complement motif): HDACTTCCBCWTDV Alignment: HDACTTCCBCWTDV ---CYTSCCTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_secondary Original Motif Reverse Complement Backward 4 11 0.0369028 Species: Mus musculus Consensus sequence (original motif): CHVTCACTGGBADHDD Consensus sequence (reverse complement motif): DDHHTBCCAGTGABHG Alignment: DDHHTBCCAGTGABHG --CYTSCCTCTGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00052 Osr2_secondary Reverse Complement Reverse Complement Backward 5 11 0.0370849 Species: Mus musculus Consensus sequence (original motif): AHHHGCTACYTRMWHV Consensus sequence (reverse complement motif): VDWRKAKGTAGCHHDT Alignment: VDWRKAKGTAGCHHDT -GCAGAGGSAKG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Original Motif Original Motif Forward 8 11 0.0381821 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH -------CYTSCCTCTGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: Motif 2 Consensus sequence (original motif): ACACACACACACAC Consensus sequence (reverse complement motif): GTGTGTGTGTGTGT ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Reverse Complement Reverse Complement Forward 1 14 0.0391499 Species: Mus musculus Consensus sequence (original motif): DVMVGCACACACKCVH Consensus sequence (reverse complement motif): HBGYGTGTGTGCVRVD Alignment: HBGYGTGTGTGCVRVD GTGTGTGTGTGTGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Forward 10 14 0.043857 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH ---------ACACACACACACAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_secondary Reverse Complement Reverse Complement Backward 3 14 0.0468808 Species: Mus musculus Consensus sequence (original motif): HVHRGCACACAAHHHV Consensus sequence (reverse complement motif): BHHHTTGTGTGCKHVD Alignment: BHHHTTGTGTGCKHVD GTGTGTGTGTGTGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Original Motif Forward 7 14 0.0479337 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV ------ACACACACACACAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Reverse Complement Original Motif Backward 9 14 0.0485959 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB -GTGTGTGTGTGTGT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Original Motif Backward 8 14 0.0526961 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH --ACACACACACACAC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_secondary Original Motif Original Motif Forward 1 14 0.0540872 Species: Mus musculus Consensus sequence (original motif): VVVRACAGVCBCDCC Consensus sequence (reverse complement motif): GGDGBGVCTGTKVVB Alignment: VVVRACAGVCBCDCC ACACACACACACAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Original Motif Original Motif Backward 9 14 0.0550075 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB ACACACACACACAC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Original Motif Original Motif Backward 1 14 0.055413 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB ---------ACACACACACACAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00096 Sox13_secondary Original Motif Reverse Complement Forward 1 14 0.0582564 Species: Mus musculus Consensus sequence (original motif): DDDHTGGGTGGGHAHHD Consensus sequence (reverse complement motif): DHHTHCCCACCCAHDDH Alignment: DDDHTGGGTGGGHAHHD ACACACACACACAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 3 Motif name: Motif 3 Consensus sequence (original motif): HCAGRRVACASAG Consensus sequence (reverse complement motif): CTSTGTBKMCTGH ************************************************************************ Best Matches for Motif ID 3 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00028 Tcfap2e_secondary Original Motif Original Motif Backward 1 13 0.0445121 Species: Mus musculus Consensus sequence (original motif): HDCDBRAAAAAADD Consensus sequence (reverse complement motif): DDTTTTTTMBDGDH Alignment: HDCDBRAAAAAADD -HCAGRRVACASAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Reverse Complement Original Motif Forward 10 13 0.0448793 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB ---------CTSTGTBKMCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00041 Foxj1_primary Reverse Complement Reverse Complement Backward 1 13 0.0454552 Species: Mus musculus Consensus sequence (original motif): HDHRTAAACAAAHDDD Consensus sequence (reverse complement motif): DDDHTTTGTTTAMHDH Alignment: DDDHTTTGTTTAMHDH ---CTSTGTBKMCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00016 Sry_secondary Original Motif Original Motif Forward 1 13 0.0481412 Species: Mus musculus Consensus sequence (original motif): HHDHDRAACAATDDVHV Consensus sequence (reverse complement motif): VHVHDATTGTTMHDDDH Alignment: HHDHDRAACAATDDVHV HCAGRRVACASAG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Backward 4 13 0.0545707 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH -HCAGRRVACASAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_secondary Original Motif Original Motif Forward 2 13 0.0553073 Species: Mus musculus Consensus sequence (original motif): DVBSBDAHAHAHAHH Consensus sequence (reverse complement motif): HHTHTHTHTDBSBVD Alignment: DVBSBDAHAHAHAHH -HCAGRRVACASAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00091 Sox5_secondary Original Motif Original Motif Backward 1 13 0.0562585 Species: Mus musculus Consensus sequence (original motif): DHDCATMATTDASDD Consensus sequence (reverse complement motif): DHSTDAATYATGDHD Alignment: DHDCATMATTDASDD --HCAGRRVACASAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00012 Bbx_secondary Reverse Complement Reverse Complement Forward 3 13 0.0564984 Species: Mus musculus Consensus sequence (original motif): HVWHBGTTAACABHBDV Consensus sequence (reverse complement motif): VHVHBTGTTAACVHWVH Alignment: VHVHBTGTTAACVHWVH --CTSTGTBKMCTGH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_secondary Original Motif Original Motif Backward 3 13 0.0571073 Species: Mus musculus Consensus sequence (original motif): VVDAATAACAAAVVB Consensus sequence (reverse complement motif): BVVTTTGTTATTDBB Alignment: VVDAATAACAAAVVB HCAGRRVACASAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_secondary Reverse Complement Reverse Complement Backward 3 13 0.0574997 Species: Mus musculus Consensus sequence (original motif): HBKTATTABAAAHHH Consensus sequence (reverse complement motif): HHDTTTVTAATAYBD Alignment: HHDTTTVTAATAYBD CTSTGTBKMCTGH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 4 Motif name: Motif 4 Consensus sequence (original motif): HAAAAHAAARMAAA Consensus sequence (reverse complement motif): TTTRKTTTHTTTTH ************************************************************************ Best Matches for Motif ID 4 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Reverse Complement Reverse Complement Forward 4 14 0.0212263 Species: Mus musculus Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: BBVTTTGTTTACATTDD ---TTTRKTTTHTTTTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Backward 1 14 0.0216448 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH ---HAAAAHAAARMAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Reverse Complement Reverse Complement Forward 4 14 0.0216826 Species: Mus musculus Consensus sequence (original motif): HDHADGTAAACAAAVVH Consensus sequence (reverse complement motif): DVVTTTGTTTACDTHDH Alignment: DVVTTTGTTTACDTHDH ---TTTRKTTTHTTTTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Reverse Complement Reverse Complement Forward 4 14 0.0232085 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: VVVWTTGTTTAMATTWD ---TTTRKTTTHTTTTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Reverse Complement Reverse Complement Backward 1 14 0.025394 Species: Mus musculus Consensus sequence (original motif): HHWAWGTAAAYAAAVDB Consensus sequence (reverse complement motif): BDVTTTKTTTACWTWHH Alignment: BDVTTTKTTTACWTWHH ---TTTRKTTTHTTTTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_secondary Reverse Complement Reverse Complement Forward 2 14 0.0257356 Species: Mus musculus Consensus sequence (original motif): HHHAYAAYAACAHHH Consensus sequence (reverse complement motif): HDDTGTTKTTKTHHD Alignment: HDDTGTTKTTKTHHD -TTTRKTTTHTTTTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primary Reverse Complement Reverse Complement Backward 1 14 0.0280765 Species: Mus musculus Consensus sequence (original motif): HDYAAAHAAMAADHD Consensus sequence (reverse complement motif): HHHTTRTTDTTTKDH Alignment: HHHTTRTTDTTTKDH -TTTRKTTTHTTTTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondary Reverse Complement Reverse Complement Backward 1 14 0.0284931 Species: Mus musculus Consensus sequence (original motif): ADDDYAWAACAAMAHH Consensus sequence (reverse complement motif): HDTYTTGTTWTKDDDT Alignment: HDTYTTGTTWTKDDDT --TTTRKTTTHTTTTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00145 Barhl2 Reverse Complement Reverse Complement Forward 3 14 0.031537 Species: Mus musculus Consensus sequence (original motif): HAMAAHCAATTAABHH Consensus sequence (reverse complement motif): HHBTTAATTGDTTYTH Alignment: HHBTTAATTGDTTYTH --TTTRKTTTHTTTTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondary Original Motif Original Motif Backward 1 14 0.0324424 Species: Mus musculus Consensus sequence (original motif): DBTHHAAAAAAAAVHDH Consensus sequence (reverse complement motif): DDHBTTTTTTTTHDAVH Alignment: DBTHHAAAAAAAAVHDH ---HAAAAHAAARMAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 5 Motif name: Motif 5 Consensus sequence (original motif): CWGAGCCAYCTYTC Consensus sequence (reverse complement motif): GAKAGKTGGCTCWG ************************************************************************ Best Matches for Motif ID 5 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_secondary Reverse Complement Original Motif Backward 2 14 0.0120339 Species: Mus musculus Consensus sequence (original motif): VBVDAGGTGTYGVBBV Consensus sequence (reverse complement motif): VVBVCKACACCTHVBV Alignment: VBVDAGGTGTYGVBBV -GAKAGKTGGCTCWG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_primary Original Motif Original Motif Forward 2 14 0.0137859 Species: Mus musculus Consensus sequence (original motif): DBBATGCCAACCHVHH Consensus sequence (reverse complement motif): DDBHGGTTGGCATVBD Alignment: DBBATGCCAACCHVHH -CWGAGCCAYCTYTC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Reverse Complement Reverse Complement Forward 3 14 0.017234 Species: Mus musculus Consensus sequence (original motif): HDTBHHCCHTAGCAACVVDHHHH Consensus sequence (reverse complement motif): HHHHDVVGTTGCTAHGGDHBAHH Alignment: HHHHDVVGTTGCTAHGGDHBAHH --GAKAGKTGGCTCWG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00264 Hoxa1 Reverse Complement Reverse Complement Backward 1 14 0.0174544 Species: Mus musculus Consensus sequence (original motif): HTDAGCTAATTAMHBY Consensus sequence (reverse complement motif): MBDRTAATTAGCTHAD Alignment: MBDRTAATTAGCTHAD --GAKAGKTGGCTCWG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Reverse Complement Backward 7 14 0.0187141 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH ---CWGAGCCAYCTYTC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Reverse Complement Original Motif Forward 4 14 0.0198398 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: HVDDVCAGATGKYHBBV ---GAKAGKTGGCTCWG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00052 Osr2_secondary Reverse Complement Reverse Complement Backward 1 14 0.0203442 Species: Mus musculus Consensus sequence (original motif): AHHHGCTACYTRMWHV Consensus sequence (reverse complement motif): VDWRKAKGTAGCHHDT Alignment: VDWRKAKGTAGCHHDT --GAKAGKTGGCTCWG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Original Motif Reverse Complement Forward 7 14 0.0208381 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH ------CWGAGCCAYCTYTC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00095 Zfp691_secondary Reverse Complement Reverse Complement Forward 3 14 0.0209451 Species: Mus musculus Consensus sequence (original motif): DABBWGACTCCTHDVHV Consensus sequence (reverse complement motif): VHBDDAGGAGTCWBBTD Alignment: VHBDDAGGAGTCWBBTD --GAKAGKTGGCTCWG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00228 Bapx1 Reverse Complement Reverse Complement Forward 4 14 0.0212049 Species: Mus musculus Consensus sequence (original motif): VHHAACCACTTAAVVAH Consensus sequence (reverse complement motif): DTBVTTAAGTGGTTHHV Alignment: DTBVTTAAGTGGTTHHV ---GAKAGKTGGCTCWG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 6 Motif name: Motif 6 Consensus sequence (original motif): CASABACWSACACA Consensus sequence (reverse complement motif): TGTGTSWGTBTSTG ************************************************************************ Best Matches for Motif ID 6 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Reverse Complement Forward 1 14 0.0357045 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC CASABACWSACACA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Reverse Complement Reverse Complement Backward 1 14 0.0482294 Species: Mus musculus Consensus sequence (original motif): HDHDDCCAGACABBHVH Consensus sequence (reverse complement motif): HVHBVTGTCTGGDDHDD Alignment: HVHBVTGTCTGGDDHDD ---TGTGTSWGTBTSTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_secondary Original Motif Original Motif Forward 1 14 0.0493845 Species: Mus musculus Consensus sequence (original motif): HDBAHCAWAACADWDVD Consensus sequence (reverse complement motif): DVHWDTGTTWTGDTBDH Alignment: HDBAHCAWAACADWDVD CASABACWSACACA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_secondary Original Motif Original Motif Forward 1 14 0.0507431 Species: Mus musculus Consensus sequence (original motif): HHHAYAAYAACAHHH Consensus sequence (reverse complement motif): HDDTGTTKTTKTHHD Alignment: HHHAYAAYAACAHHH CASABACWSACACA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Original Motif Original Motif Backward 9 14 0.0524108 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: MWSMBAARRATGCDCABHATGD CASABACWSACACA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_primary Original Motif Original Motif Forward 1 14 0.0538393 Species: Mus musculus Consensus sequence (original motif): HADTBVADGATGCATCMTGMVHB Consensus sequence (reverse complement motif): VHVRCAYGATGCATCDTVVADTH Alignment: HADTBVADGATGCATCMTGMVHB CASABACWSACACA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_secondary Reverse Complement Reverse Complement Backward 1 14 0.0538699 Species: Mus musculus Consensus sequence (original motif): CHVTCACTGGBADHDD Consensus sequence (reverse complement motif): DDHHTBCCAGTGABHG Alignment: DDHHTBCCAGTGABHG --TGTGTSWGTBTSTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00014 Sox17_secondary Original Motif Original Motif Forward 4 14 0.0541456 Species: Mus musculus Consensus sequence (original motif): VHBHHCATTCATRHVDD Consensus sequence (reverse complement motif): DDBDKATGAATGHDBHV Alignment: VHBHHCATTCATRHVDD ---CASABACWSACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Original Motif Backward 1 14 0.0541653 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH ---------CASABACWSACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Reverse Complement Reverse Complement Backward 2 14 0.0545034 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB --------TGTGTSWGTBTSTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 7 Motif name: Motif 7 Consensus sequence (original motif): AAAATKCTATT Consensus sequence (reverse complement motif): AATAGYATTTT ************************************************************************ Best Matches for Motif ID 7 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00145 Barhl2 Reverse Complement Reverse Complement Backward 1 11 0.0314776 Species: Mus musculus Consensus sequence (original motif): HAMAAHCAATTAABHH Consensus sequence (reverse complement motif): HHBTTAATTGDTTYTH Alignment: HHBTTAATTGDTTYTH -----AATAGYATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Original Motif Reverse Complement Backward 6 11 0.0388915 Species: Mus musculus Consensus sequence (original motif): HDHYYAATAAAAHHHH Consensus sequence (reverse complement motif): HDHHTTTTATTKKHDD Alignment: HDHHTTTTATTKKHDD AAAATKCTATT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00016 Sry_primary Original Motif Reverse Complement Backward 5 11 0.039378 Species: Mus musculus Consensus sequence (original motif): BHDHATTATAATDDDV Consensus sequence (reverse complement motif): VDDDATTATAATHDHV Alignment: VDDDATTATAATHDHV -AAAATKCTATT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Original Motif Reverse Complement Backward 6 11 0.039567 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB -AAAATKCTATT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Reverse Complement Backward 11 11 0.0403247 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH -AAAATKCTATT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00038 Spdef_secondary Original Motif Original Motif Backward 3 11 0.0405096 Species: Mus musculus Consensus sequence (original motif): DDBHACATCCTAKWDV Consensus sequence (reverse complement motif): VDWYTAGGATGTHVDH Alignment: DDBHACATCCTAKWDV ---AAAATKCTATT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00191 Pou2f2 Reverse Complement Reverse Complement Backward 2 11 0.0406764 Species: Mus musculus Consensus sequence (original motif): BHDTATGCAAATDHDV Consensus sequence (reverse complement motif): BHHDATTTGCATAHHV Alignment: BHHDATTTGCATAHHV ----AATAGYATTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00179 Pou2f3 Reverse Complement Reverse Complement Forward 5 11 0.0407045 Species: Mus musculus Consensus sequence (original motif): BHDTATGCAAATBHDV Consensus sequence (reverse complement motif): BHHVATTTGCATAHHV Alignment: BHHVATTTGCATAHHV ----AATAGYATTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00023 Sox30_primary Reverse Complement Reverse Complement Backward 6 11 0.0413872 Species: Mus musculus Consensus sequence (original motif): DHDBAACAATDRHHHH Consensus sequence (reverse complement motif): HHHHMHATTGTTBDHD Alignment: HHHHMHATTGTTBDHD AATAGYATTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00166 Barhl1 Original Motif Original Motif Backward 6 11 0.0427435 Species: Mus musculus Consensus sequence (original motif): HAHAACCAATTARBDH Consensus sequence (reverse complement motif): DDVKTAATTGGTTDTH Alignment: HAHAACCAATTARBDH AAAATKCTATT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 8 Motif name: Motif 8 Consensus sequence (original motif): TGAAAATSCTT Consensus sequence (reverse complement motif): AAGSATTTTCA ************************************************************************ Best Matches for Motif ID 8 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00179 Pou2f3 Reverse Complement Reverse Complement Forward 1 11 0.0170413 Species: Mus musculus Consensus sequence (original motif): BHDTATGCAAATBHDV Consensus sequence (reverse complement motif): BHHVATTTGCATAHHV Alignment: BHHVATTTGCATAHHV AAGSATTTTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00191 Pou2f2 Reverse Complement Reverse Complement Backward 6 11 0.0186797 Species: Mus musculus Consensus sequence (original motif): BHDTATGCAAATDHDV Consensus sequence (reverse complement motif): BHHDATTTGCATAHHV Alignment: BHHDATTTGCATAHHV AAGSATTTTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00044 Mafk_primary Original Motif Original Motif Backward 5 11 0.025968 Species: Mus musculus Consensus sequence (original motif): DWAAAWTGCTGACTH Consensus sequence (reverse complement motif): HAGTCAGCAWTTTWD Alignment: DWAAAWTGCTGACTH TGAAAATSCTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00389 Nkx3-1 Original Motif Reverse Complement Forward 3 11 0.0281427 Species: Mus musculus Consensus sequence (original motif): DDHDAAGTACTTAAADB Consensus sequence (reverse complement motif): BDTTTAAGTACTTDDDD Alignment: BDTTTAAGTACTTDDDD --TGAAAATSCTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00153 Pitx1 Reverse Complement Original Motif Backward 3 11 0.02834 Species: Mus musculus Consensus sequence (original motif): HBVDRGGGATTAAMDHH Consensus sequence (reverse complement motif): HHDRTTAATCCCKHBVH Alignment: HBVDRGGGATTAAMDHH ----AAGSATTTTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00219 Cutl1_3494.2 Original Motif Reverse Complement Forward 4 11 0.0294239 Species: Mus musculus Consensus sequence (original motif): DAVTGATRATCAHTD Consensus sequence (reverse complement motif): DADTGATMATCABTD Alignment: DADTGATMATCABTD ---TGAAAATSCTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00119 Nkx2-9 Reverse Complement Reverse Complement Backward 2 11 0.0300831 Species: Mus musculus Consensus sequence (original motif): TTTDAAGTACTTVAADH Consensus sequence (reverse complement motif): HDTTBAAGTACTTDAAA Alignment: HDTTBAAGTACTTDAAA -----AAGSATTTTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00190 Nkx2-3 Reverse Complement Reverse Complement Forward 5 11 0.0302066 Species: Mus musculus Consensus sequence (original motif): YYTTAAGTACTTAAHD Consensus sequence (reverse complement motif): HHTTAAGTACTTAAMK Alignment: HHTTAAGTACTTAAMK ----AAGSATTTTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00038 Spdef_secondary Reverse Complement Reverse Complement Backward 2 11 0.0318364 Species: Mus musculus Consensus sequence (original motif): DDBHACATCCTAKWDV Consensus sequence (reverse complement motif): VDWYTAGGATGTHVDH Alignment: VDWYTAGGATGTHVDH ----AAGSATTTTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00080 Gata5_primary Reverse Complement Reverse Complement Backward 6 11 0.0333422 Species: Mus musculus Consensus sequence (original motif): HDDDCTGATAAGRVDDD Consensus sequence (reverse complement motif): DDHBKCTTATCAGDDDH Alignment: DDHBKCTTATCAGDDDH -AAGSATTTTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 9 Motif name: Motif 9 Consensus sequence (original motif): AACATATTTTCA Consensus sequence (reverse complement motif): TGAAAATATGTT ************************************************************************ Best Matches for Motif ID 9 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00250 Irx5 Reverse Complement Original Motif Backward 6 12 0.0253217 Species: Mus musculus Consensus sequence (original motif): DDDHWACATGTWHDABW Consensus sequence (reverse complement motif): WVTDHWACATGTWHDDD Alignment: DDDHWACATGTWHDABW TGAAAATATGTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00236 Irx2 Reverse Complement Original Motif Forward 1 12 0.0267342 Species: Mus musculus Consensus sequence (original motif): WDDDTACATGTADDWBW Consensus sequence (reverse complement motif): WVWDDTACATGTADDDW Alignment: WDDDTACATGTADDWBW TGAAAATATGTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00059 Arid5a_primary Reverse Complement Reverse Complement Backward 1 12 0.0285822 Species: Mus musculus Consensus sequence (original motif): VYAATATTGVDADH Consensus sequence (reverse complement motif): HDTDVCAATATTMV Alignment: HDTDVCAATATTMV --TGAAAATATGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00194 Irx4 Reverse Complement Original Motif Forward 1 12 0.0297419 Species: Mus musculus Consensus sequence (original motif): WDHDWACATGTWAWABD Consensus sequence (reverse complement motif): DBTWTWACATGTWDHDW Alignment: WDHDWACATGTWAWABD TGAAAATATGTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_0920.1 Reverse Complement Original Motif Forward 1 12 0.029857 Species: Mus musculus Consensus sequence (original motif): DDDDTACATGTAVWWHD Consensus sequence (reverse complement motif): DDWWBTACATGTADDDD Alignment: DDDDTACATGTAVWWHD TGAAAATATGTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_2226.1 Reverse Complement Original Motif Backward 6 12 0.0299906 Species: Mus musculus Consensus sequence (original motif): DDDHTACATGTAVWDHD Consensus sequence (reverse complement motif): DHDWBTACATGTAHDDD Alignment: DDDHTACATGTAVWDHD TGAAAATATGTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00150 Irx6 Reverse Complement Original Motif Forward 1 12 0.0303256 Species: Mus musculus Consensus sequence (original motif): HAHDTACATGTAVDWHT Consensus sequence (reverse complement motif): AHWDBTACATGTADHTH Alignment: AHWDBTACATGTADHTH TGAAAATATGTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00171 Msx3 Reverse Complement Reverse Complement Backward 4 12 0.0315999 Species: Mus musculus Consensus sequence (original motif): VAHAACYAATTAABHH Consensus sequence (reverse complement motif): HHVTTAATTKGTTHTV Alignment: HHVTTAATTKGTTHTV -TGAAAATATGTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00146 Pou6f1_3733.1 Original Motif Reverse Complement Forward 4 12 0.0330849 Species: Mus musculus Consensus sequence (original motif): VHHVATAATGAGSTDDH Consensus sequence (reverse complement motif): DHDASCTCATTATVHHB Alignment: DHDASCTCATTATVHHB ---AACATATTTTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00080 Gata5_primary Original Motif Reverse Complement Forward 1 12 0.0334048 Species: Mus musculus Consensus sequence (original motif): HDDDCTGATAAGRVDDD Consensus sequence (reverse complement motif): DDHBKCTTATCAGDDDH Alignment: HDDDCTGATAAGRVDDD AACATATTTTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 10 Motif name: Motif 10 Consensus sequence (original motif): AAAMATTGTTT Consensus sequence (reverse complement motif): AAACAATYTTT ************************************************************************ Best Matches for Motif ID 10 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00114 Homez Original Motif Original Motif Backward 6 11 0.0148981 Species: Mus musculus Consensus sequence (original motif): AHWWMATCGTTTTBADD Consensus sequence (reverse complement motif): HDTVAAAACGATRWWHT Alignment: AHWWMATCGTTTTBADD -AAAMATTGTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00096 Sox13_primary Original Motif Reverse Complement Backward 5 11 0.0154717 Species: Mus musculus Consensus sequence (original motif): DHDRGAACAATWWDHW Consensus sequence (reverse complement motif): WHDWWATTGTTCKDHD Alignment: WHDWWATTGTTCKDHD -AAAMATTGTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00064 Sox18_primary Reverse Complement Reverse Complement Backward 1 11 0.0200897 Species: Mus musculus Consensus sequence (original motif): BWBHATTGTTBTHDHH Consensus sequence (reverse complement motif): HHDHABAACAATHBWV Alignment: HHDHABAACAATHBWV -----AAACAATYTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_secondary Reverse Complement Reverse Complement Forward 5 11 0.020377 Species: Mus musculus Consensus sequence (original motif): VVHDDAATTGTTDVDDD Consensus sequence (reverse complement motif): DDHVDAACAATTDDHVV Alignment: DDHVDAACAATTDDHVV ----AAACAATYTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00051 Sox8_primary Reverse Complement Reverse Complement Backward 3 11 0.0208116 Species: Mus musculus Consensus sequence (original motif): DDATBWATTGTTHHDDD Consensus sequence (reverse complement motif): DDDHDAACAATWBATDD Alignment: DDDHDAACAATWBATDD ----AAACAATYTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00023 Sox30_primary Original Motif Reverse Complement Backward 4 11 0.0235407 Species: Mus musculus Consensus sequence (original motif): DHDBAACAATDRHHHH Consensus sequence (reverse complement motif): HHHHMHATTGTTBDHD Alignment: HHHHMHATTGTTBDHD --AAAMATTGTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00091 Sox5_primary Reverse Complement Original Motif Forward 5 11 0.0236834 Species: Mus musculus Consensus sequence (original motif): DHDDGAACAATWDDHD Consensus sequence (reverse complement motif): DHDDWATTGTTCDDHD Alignment: DHDDGAACAATWDDHD ----AAACAATYTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00014 Sox17_primary Reverse Complement Original Motif Forward 3 11 0.0256157 Species: Mus musculus Consensus sequence (original motif): VDDAACAATTVAWHD Consensus sequence (reverse complement motif): DDWTBAATTGTTDDB Alignment: VDDAACAATTVAWHD --AAACAATYTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Reverse Complement Forward 6 11 0.0264034 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH -----AAAMATTGTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00075 Sox15_primary Original Motif Reverse Complement Forward 3 11 0.0265966 Species: Mus musculus Consensus sequence (original motif): HDDDDAACAATWRRBHD Consensus sequence (reverse complement motif): DHVKMWATTGTTHDHDH Alignment: DHVKMWATTGTTHDHDH --AAAMATTGTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 11 Motif name: Motif 11 Consensus sequence (original motif): AAMATGTTTMAA Consensus sequence (reverse complement motif): TTYAAACATYTT ************************************************************************ Best Matches for Motif ID 11 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00250 Irx5 Original Motif Reverse Complement Forward 6 12 0.00569393 Species: Mus musculus Consensus sequence (original motif): DDDHWACATGTWHDABW Consensus sequence (reverse complement motif): WVTDHWACATGTWHDDD Alignment: WVTDHWACATGTWHDDD -----AAMATGTTTMAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00236 Irx2 Original Motif Reverse Complement Backward 1 12 0.00753568 Species: Mus musculus Consensus sequence (original motif): WDDDTACATGTADDWBW Consensus sequence (reverse complement motif): WVWDDTACATGTADDDW Alignment: WVWDDTACATGTADDDW -----AAMATGTTTMAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Reverse Complement Backward 5 12 0.00927938 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: VVVWTTGTTTAMATTWD -AAMATGTTTMAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00150 Irx6 Original Motif Original Motif Backward 2 12 0.0104366 Species: Mus musculus Consensus sequence (original motif): HAHDTACATGTAVDWHT Consensus sequence (reverse complement motif): AHWDBTACATGTADHTH Alignment: HAHDTACATGTAVDWHT ----AAMATGTTTMAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00194 Irx4 Original Motif Original Motif Backward 2 12 0.0110074 Species: Mus musculus Consensus sequence (original motif): WDHDWACATGTWAWABD Consensus sequence (reverse complement motif): DBTWTWACATGTWDHDW Alignment: WDHDWACATGTWAWABD ----AAMATGTTTMAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_primary Reverse Complement Reverse Complement Backward 2 12 0.0113539 Species: Mus musculus Consensus sequence (original motif): BVHDAGGTGTGAAAHHH Consensus sequence (reverse complement motif): HHHTTTCACACCTDHBV Alignment: HHHTTTCACACCTDHBV ----TTYAAACATYTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_2226.1 Original Motif Reverse Complement Forward 6 12 0.0118824 Species: Mus musculus Consensus sequence (original motif): DDDHTACATGTAVWDHD Consensus sequence (reverse complement motif): DHDWBTACATGTAHDDD Alignment: DHDWBTACATGTAHDDD -----AAMATGTTTMAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_0920.1 Original Motif Reverse Complement Backward 1 12 0.0132149 Species: Mus musculus Consensus sequence (original motif): DDDDTACATGTAVWWHD Consensus sequence (reverse complement motif): DDWWBTACATGTADDDD Alignment: DDDDTACATGTAVWWHD -----AAMATGTTTMAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Original Motif Reverse Complement Backward 5 12 0.0142458 Species: Mus musculus Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: BBVTTTGTTTACATTDD -AAMATGTTTMAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Original Motif Reverse Complement Backward 5 12 0.0210343 Species: Mus musculus Consensus sequence (original motif): HDHADGTAAACAAAVVH Consensus sequence (reverse complement motif): DVVTTTGTTTACDTHDH Alignment: DVVTTTGTTTACDTHDH -AAMATGTTTMAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 12 Motif name: Motif 12 Consensus sequence (original motif): ACAACACATTT Consensus sequence (reverse complement motif): AAATGTGTTGT ************************************************************************ Best Matches for Motif ID 12 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_primary Reverse Complement Original Motif Forward 3 11 0.0181 Species: Mus musculus Consensus sequence (original motif): DVDDATGGGATGKMDDV Consensus sequence (reverse complement motif): BDDYYCATCCCATDDBD Alignment: DVDDATGGGATGKMDDV --AAATGTGTTGT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_secondary Reverse Complement Original Motif Forward 3 11 0.0202807 Species: Mus musculus Consensus sequence (original motif): VBVDAGGTGTYGVBBV Consensus sequence (reverse complement motif): VVBVCKACACCTHVBV Alignment: VBVDAGGTGTYGVBBV --AAATGTGTTGT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00171 Msx3 Reverse Complement Reverse Complement Backward 2 11 0.0211208 Species: Mus musculus Consensus sequence (original motif): VAHAACYAATTAABHH Consensus sequence (reverse complement motif): HHVTTAATTKGTTHTV Alignment: HHVTTAATTKGTTHTV ----AAATGTGTTGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00072 IRC900814_primary Reverse Complement Reverse Complement Forward 2 11 0.0216511 Species: Mus musculus Consensus sequence (original motif): DDHTACGACAAAWDDB Consensus sequence (reverse complement motif): BHDWTTTGTCGTAHDD Alignment: BHDWTTTGTCGTAHDD -AAATGTGTTGT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00166 Barhl1 Reverse Complement Reverse Complement Backward 2 11 0.0230664 Species: Mus musculus Consensus sequence (original motif): HAHAACCAATTARBDH Consensus sequence (reverse complement motif): DDVKTAATTGGTTDTH Alignment: DDVKTAATTGGTTDTH ----AAATGTGTTGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Reverse Complement Original Motif Backward 7 11 0.0231414 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: HAAWDTGCTGACDWARH AAATGTGTTGT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Reverse Complement Reverse Complement Forward 4 11 0.0270722 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT ---AAATGTGTTGT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00236 Irx2 Reverse Complement Reverse Complement Backward 1 11 0.0272203 Species: Mus musculus Consensus sequence (original motif): WDDDTACATGTADDWBW Consensus sequence (reverse complement motif): WVWDDTACATGTADDDW Alignment: WVWDDTACATGTADDDW ------AAATGTGTTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Original Motif Original Motif Forward 9 11 0.0274347 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DTVBDDRGACCACCCAGDWDGBH --------ACAACACATTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00146 Pou6f1_3733.1 Reverse Complement Original Motif Backward 2 11 0.0275808 Species: Mus musculus Consensus sequence (original motif): VHHVATAATGAGSTDDH Consensus sequence (reverse complement motif): DHDASCTCATTATVHHB Alignment: VHHVATAATGAGSTDDH -----AAATGTGTTGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 13 Motif name: Motif 13 Consensus sequence (original motif): AAWATRTATTT Consensus sequence (reverse complement motif): AAATAKATWTT ************************************************************************ Best Matches for Motif ID 13 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00266 Prrx1 Original Motif Reverse Complement Backward 7 11 0.0142423 Species: Mus musculus Consensus sequence (original motif): VBAACTAATTARYTDVT Consensus sequence (reverse complement motif): AVDAKKTAATTAGTTVV Alignment: AVDAKKTAATTAGTTVV AAWATRTATTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00150 Irx6 Original Motif Reverse Complement Backward 2 11 0.020069 Species: Mus musculus Consensus sequence (original motif): HAHDTACATGTAVDWHT Consensus sequence (reverse complement motif): AHWDBTACATGTADHTH Alignment: AHWDBTACATGTADHTH -----AAWATRTATTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00236 Irx2 Original Motif Reverse Complement Forward 6 11 0.0214423 Species: Mus musculus Consensus sequence (original motif): WDDDTACATGTADDWBW Consensus sequence (reverse complement motif): WVWDDTACATGTADDDW Alignment: WVWDDTACATGTADDDW -----AAWATRTATTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00261 Lhx4 Reverse Complement Original Motif Backward 1 11 0.0230284 Species: Mus musculus Consensus sequence (original motif): DADVCTAATTAGBTWTG Consensus sequence (reverse complement motif): CAWABCTAATTAGBDTD Alignment: DADVCTAATTAGBTWTG ------AAATAKATWTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00170 Isl2 Reverse Complement Reverse Complement Forward 5 11 0.0233945 Species: Mus musculus Consensus sequence (original motif): MHHAAYYMATTAADWH Consensus sequence (reverse complement motif): HWDTTAATYKMTTHHR Alignment: HWDTTAATYKMTTHHR ----AAATAKATWTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00212 Lhx5 Original Motif Reverse Complement Backward 7 11 0.0236276 Species: Mus musculus Consensus sequence (original motif): VDHATTAATTAAAWHHB Consensus sequence (reverse complement motif): VDHWTTTAATTAATHHV Alignment: VDHWTTTAATTAATHHV AAWATRTATTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00108 Alx3 Original Motif Reverse Complement Backward 7 11 0.0243258 Species: Mus musculus Consensus sequence (original motif): WVHAYTAATTARYTVHV Consensus sequence (reverse complement motif): VHVAKMTAATTAKTHBW Alignment: VHVAKMTAATTAKTHBW AAWATRTATTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00171 Msx3 Reverse Complement Reverse Complement Backward 2 11 0.0254704 Species: Mus musculus Consensus sequence (original motif): VAHAACYAATTAABHH Consensus sequence (reverse complement motif): HHVTTAATTKGTTHTV Alignment: HHVTTAATTKGTTHTV ----AAATAKATWTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00250 Irx5 Original Motif Reverse Complement Forward 6 11 0.0259267 Species: Mus musculus Consensus sequence (original motif): DDDHWACATGTWHDABW Consensus sequence (reverse complement motif): WVTDHWACATGTWHDDD Alignment: WVTDHWACATGTWHDDD -----AAWATRTATTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_2226.1 Original Motif Original Motif Forward 5 11 0.0263428 Species: Mus musculus Consensus sequence (original motif): DDDHTACATGTAVWDHD Consensus sequence (reverse complement motif): DHDWBTACATGTAHDDD Alignment: DDDHTACATGTAVWDHD ----AAWATRTATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 14 Motif name: Motif 14 Consensus sequence (original motif): TAATKATATAA Consensus sequence (reverse complement motif): TTATATYATTA ************************************************************************ Best Matches for Motif ID 14 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00264 Hoxa1 Original Motif Reverse Complement Forward 5 11 0.0229661 Species: Mus musculus Consensus sequence (original motif): HTDAGCTAATTAMHBY Consensus sequence (reverse complement motif): MBDRTAATTAGCTHAD Alignment: MBDRTAATTAGCTHAD ----TAATKATATAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00129 Pou3f1 Original Motif Original Motif Forward 4 11 0.02767 Species: Mus musculus Consensus sequence (original motif): DVBTAATTAATTAABTH Consensus sequence (reverse complement motif): DAVTTAATTAATTAVBD Alignment: DVBTAATTAATTAABTH ---TAATKATATAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00212 Lhx5 Original Motif Original Motif Backward 2 11 0.0295456 Species: Mus musculus Consensus sequence (original motif): VDHATTAATTAAAWHHB Consensus sequence (reverse complement motif): VDHWTTTAATTAATHHV Alignment: VDHATTAATTAAAWHHB -----TAATKATATAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00130 Lhx3 Original Motif Original Motif Backward 2 11 0.0295647 Species: Mus musculus Consensus sequence (original motif): VDAATTAATTAAWWHHB Consensus sequence (reverse complement motif): VHHWWTTAATTAATTDV Alignment: VDAATTAATTAAWWHHB -----TAATKATATAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00247 Pax4 Original Motif Reverse Complement Backward 1 11 0.0309932 Species: Mus musculus Consensus sequence (original motif): WVVDYTAATTARYBSDH Consensus sequence (reverse complement motif): DDSBKMTAATTAKDBVW Alignment: DDSBKMTAATTAKDBVW ------TAATKATATAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00108 Alx3 Original Motif Reverse Complement Forward 7 11 0.0319078 Species: Mus musculus Consensus sequence (original motif): WVHAYTAATTARYTVHV Consensus sequence (reverse complement motif): VHVAKMTAATTAKTHBW Alignment: VHVAKMTAATTAKTHBW ------TAATKATATAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00105 Pou3f4 Original Motif Original Motif Forward 4 11 0.0323543 Species: Mus musculus Consensus sequence (original motif): DVHTAATTAATTADDDB Consensus sequence (reverse complement motif): BDDDTAATTAATTAHBD Alignment: DVHTAATTAATTADDDB ---TAATKATATAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00202 Dlx1 Original Motif Reverse Complement Forward 3 11 0.0327446 Species: Mus musculus Consensus sequence (original motif): BHGVRDTAATTADY Consensus sequence (reverse complement motif): MDTAATTAHMBCHB Alignment: MDTAATTAHMBCHB --TAATKATATAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00128 Pou3f2 Original Motif Reverse Complement Forward 6 11 0.0328898 Species: Mus musculus Consensus sequence (original motif): VDDAATTAATTARBDHD Consensus sequence (reverse complement motif): HHDVMTAATTAATTDDV Alignment: HHDVMTAATTAATTDDV -----TAATKATATAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00266 Prrx1 Original Motif Reverse Complement Forward 7 11 0.0331473 Species: Mus musculus Consensus sequence (original motif): VBAACTAATTARYTDVT Consensus sequence (reverse complement motif): AVDAKKTAATTAGTTVV Alignment: AVDAKKTAATTAGTTVV ------TAATKATATAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 15 Motif name: Motif 15 Consensus sequence (original motif): AAAGRTMAAACTA Consensus sequence (reverse complement motif): TAGTTTYAKCTTT ************************************************************************ Best Matches for Motif ID 15 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00074 Isgf3g_primary Reverse Complement Reverse Complement Forward 2 13 0.0359564 Species: Mus musculus Consensus sequence (original motif): VDRAAWCGAAACTDA Consensus sequence (reverse complement motif): TDAGTTTCGWTTKDV Alignment: TDAGTTTCGWTTKDV -TAGTTTYAKCTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Original Motif Reverse Complement Backward 4 13 0.0371142 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: BDDASATCAAAGGMDDD -AAAGRTMAAACTA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Original Motif Original Motif Backward 4 13 0.0377174 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH -AAAGRTMAAACTA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Original Motif Original Motif Backward 4 13 0.0394685 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: HHHASATCAAAGVRHHH -AAAGRTMAAACTA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Backward 6 13 0.0406011 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV ----TAGTTTYAKCTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Backward 4 13 0.0411941 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD -AAAGRTMAAACTA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Original Motif Original Motif Backward 1 13 0.042799 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: DHDBCAAGGTCAHVBDH ----AAAGRTMAAACTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Original Motif Forward 2 13 0.0473603 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: DWAATRTAAACAAWVVB -AAAGRTMAAACTA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00040 Irf5_primary Reverse Complement Reverse Complement Backward 2 13 0.0474515 Species: Mus musculus Consensus sequence (original motif): DDDWAYCGAAACYDV Consensus sequence (reverse complement motif): BDKGTTTCGKTWDDD Alignment: BDKGTTTCGKTWDDD -TAGTTTYAKCTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00199 Six4 Reverse Complement Reverse Complement Backward 1 13 0.0477024 Species: Mus musculus Consensus sequence (original motif): ADDHATGACACCBHBBV Consensus sequence (reverse complement motif): BBVHVGGTGTCATHDDT Alignment: BBVHVGGTGTCATHDDT ----TAGTTTYAKCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 16 Motif name: Motif 16 Consensus sequence (original motif): TCTKTGTCAAWA Consensus sequence (reverse complement motif): TWTTGACAYAGA ************************************************************************ Best Matches for Motif ID 16 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00258 Tgif2 Reverse Complement Reverse Complement Forward 2 12 0.00294541 Species: Mus musculus Consensus sequence (original motif): AABBAGCTGTCAAWVV Consensus sequence (reverse complement motif): VBWTTGACAGCTVBTT Alignment: VBWTTGACAGCTVBTT -TWTTGACAYAGA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00210 Mrg2 Reverse Complement Reverse Complement Backward 4 12 0.00709656 Species: Mus musculus Consensus sequence (original motif): DADBASCTGTCAAHVH Consensus sequence (reverse complement motif): DBHTTGACAGSTVDTD Alignment: DBHTTGACAGSTVDTD -TWTTGACAYAGA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00186 Meis1 Original Motif Original Motif Forward 4 12 0.00883873 Species: Mus musculus Consensus sequence (original motif): WAVBASCTGTCAAWVH Consensus sequence (reverse complement motif): DBWTTGACAGSTBVTW Alignment: WAVBASCTGTCAAWVH ---TCTKTGTCAAWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00226 Mrg1 Original Motif Original Motif Forward 4 12 0.00900015 Species: Mus musculus Consensus sequence (original motif): WAVBASCTGTCAAWHB Consensus sequence (reverse complement motif): BHWTTGACAGSTBBTW Alignment: WAVBASCTGTCAAWHB ---TCTKTGTCAAWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00122 Tgif1 Reverse Complement Original Motif Forward 3 12 0.0128037 Species: Mus musculus Consensus sequence (original motif): DABWWTGACAGCTVVBD Consensus sequence (reverse complement motif): DBVVAGCTGTCAWWVTH Alignment: DABWWTGACAGCTVVBD --TWTTGACAYAGA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Reverse Complement Reverse Complement Backward 1 12 0.0145754 Species: Mus musculus Consensus sequence (original motif): HHWAWGTAAAYAAAVDB Consensus sequence (reverse complement motif): BDVTTTKTTTACWTWHH Alignment: BDVTTTKTTTACWTWHH -----TWTTGACAYAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00205 Pknox2 Reverse Complement Reverse Complement Backward 4 12 0.0147372 Species: Mus musculus Consensus sequence (original motif): HAVSRSCTGTCAATHB Consensus sequence (reverse complement motif): VHATTGACAGSKSVTH Alignment: VHATTGACAGSKSVTH -TWTTGACAYAGA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00203 Pknox1 Original Motif Original Motif Forward 4 12 0.0147793 Species: Mus musculus Consensus sequence (original motif): DRVSASCTGTCAAWVV Consensus sequence (reverse complement motif): VVWTTGACAGSTSBKD Alignment: DRVSASCTGTCAAWVV ---TCTKTGTCAAWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Reverse Complement Original Motif Backward 1 12 0.0150474 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: DMTWDGTCAGCADWTTH -----TWTTGACAYAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00103 Jundm2_secondary Reverse Complement Reverse Complement Backward 4 12 0.0167106 Species: Mus musculus Consensus sequence (original motif): VDKDRTGASTCAYHDH Consensus sequence (reverse complement motif): HDDKTGASTCAKHRDB Alignment: HDDKTGASTCAKHRDB -TWTTGACAYAGA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 17 Motif name: Motif 17 Consensus sequence (original motif): CTTCTGACCTC Consensus sequence (reverse complement motif): GAGGTCAGAAG ************************************************************************ Best Matches for Motif ID 17 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Reverse Complement Original Motif Forward 6 11 0 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH -----GAGGTCAGAAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Reverse Complement Reverse Complement Backward 5 11 0.00315419 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: DMTWDGTCAGCADWTTH --GAGGTCAGAAG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_primary Reverse Complement Original Motif Backward 1 11 0.00435047 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCAHVHB Consensus sequence (reverse complement motif): BHVDTGACCTTTDVDD Alignment: BHVDTGACCTTTDVDD -----GAGGTCAGAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Reverse Complement Original Motif Backward 1 11 0.00499607 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCACVHD Consensus sequence (reverse complement motif): HHVGTGACCTTTDVDD Alignment: HHVGTGACCTTTDVDD -----GAGGTCAGAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Original Motif Original Motif Backward 6 11 0.00503678 Species: Mus musculus Consensus sequence (original motif): DBHBDTGACCCCDHVHB Consensus sequence (reverse complement motif): VHBHDGGGGTCAHBHBD Alignment: DBHBDTGACCCCDHVHB -CTTCTGACCTC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Original Motif Reverse Complement Forward 2 11 0.00855607 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: HHBVHTGACCTTGVDHD -CTTCTGACCTC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00020 Atf1_primary Reverse Complement Reverse Complement Backward 1 11 0.0106472 Species: Mus musculus Consensus sequence (original motif): DBDRTGACGTCAYHRD Consensus sequence (reverse complement motif): DMDMTGACGTCAKHBD Alignment: DMDMTGACGTCAKHBD -----GAGGTCAGAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_primary Reverse Complement Original Motif Backward 2 11 0.0108194 Species: Mus musculus Consensus sequence (original motif): BDBVMGGGGTCAABHDV Consensus sequence (reverse complement motif): BHHVTTGACCCCYVVDB Alignment: BDBVMGGGGTCAABHDV -----GAGGTCAGAAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_primary Reverse Complement Original Motif Backward 4 11 0.0131175 Species: Mus musculus Consensus sequence (original motif): BVHDAGGTGTGAAAHHH Consensus sequence (reverse complement motif): HHHTTTCACACCTDHBV Alignment: BVHDAGGTGTGAAAHHH ---GAGGTCAGAAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00103 Jundm2_primary Original Motif Reverse Complement Backward 6 11 0.0132197 Species: Mus musculus Consensus sequence (original motif): BBGATGACGTCAYCVH Consensus sequence (reverse complement motif): HVGMTGACGTCATCBB Alignment: HVGMTGACGTCATCBB CTTCTGACCTC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 18 Motif name: Motif 18 Consensus sequence (original motif): CAAAGTCCAGC Consensus sequence (reverse complement motif): GCTGGACTTTG ************************************************************************ Best Matches for Motif ID 18 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_secondary Reverse Complement Reverse Complement Forward 3 11 0 Species: Mus musculus Consensus sequence (original motif): BBHHAAAGTCCAMTHH Consensus sequence (reverse complement motif): HHAYTGGACTTTHDBV Alignment: HHAYTGGACTTTHDBV --GCTGGACTTTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Reverse Complement Reverse Complement Forward 3 11 0.0313848 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: HHBVHTGACCTTGVDHD --GCTGGACTTTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Original Motif Original Motif Backward 3 11 0.0347594 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCACVHD Consensus sequence (reverse complement motif): HHVGTGACCTTTDVDD Alignment: DHBHAAAGGTCACVHD ---CAAAGTCCAGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_primary Original Motif Original Motif Backward 3 11 0.0448871 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCAHVHB Consensus sequence (reverse complement motif): BHVDTGACCTTTDVDD Alignment: DHBHAAAGGTCAHVHB ---CAAAGTCCAGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Original Motif Forward 10 11 0.0461676 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH ---------GCTGGACTTTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Original Motif Original Motif Forward 4 11 0.0468432 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DTVBDDRGACCACCCAGDWDGBH ---CAAAGTCCAGC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_secondary Reverse Complement Reverse Complement Forward 6 11 0.0474554 Species: Mus musculus Consensus sequence (original motif): BDDRVGACCACCHBDVB Consensus sequence (reverse complement motif): BBDVHGGTGGTCBKDDB Alignment: BBDVHGGTGGTCBKDDB -----GCTGGACTTTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00416 Fli1 Reverse Complement Reverse Complement Backward 3 11 0.0475257 Species: Mus musculus Consensus sequence (original motif): VBBVAYTTCCGGTDDH Consensus sequence (reverse complement motif): DHDACCGGAAKTBBVV Alignment: DHDACCGGAAKTBBVV ---GCTGGACTTTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Original Motif Original Motif Forward 5 11 0.0476315 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: HDGHHBHRGACCACCCGSVDVG ----CAAAGTCCAGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Original Motif Original Motif Backward 9 11 0.0492402 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: ABBBBVVRGACCACCCACRDBBM ----CAAAGTCCAGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 19 Motif name: Motif 19 Consensus sequence (original motif): AGAGAAAG Consensus sequence (reverse complement motif): CTTTCTCT ************************************************************************ Best Matches for Motif ID 19 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondary Original Motif Original Motif Backward 5 8 0 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: VVDBASACAAAGRADH ----AGAGAAAG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00419 Spic Original Motif Original Motif Backward 4 8 0.00218499 Species: Mus musculus Consensus sequence (original motif): VAAAGMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRCTTTB Alignment: VAAAGMGGAAGTWD ---AGAGAAAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00074 Isgf3g_primary Reverse Complement Reverse Complement Forward 4 8 0.0130365 Species: Mus musculus Consensus sequence (original motif): VDRAAWCGAAACTDA Consensus sequence (reverse complement motif): TDAGTTTCGWTTKDV Alignment: TDAGTTTCGWTTKDV ---CTTTCTCT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00085 Sfpi1_primary Original Motif Original Motif Forward 4 8 0.013531 Species: Mus musculus Consensus sequence (original motif): BDAWGVGGAAGTDH Consensus sequence (reverse complement motif): HDACTTCCBCWTDV Alignment: BDAWGVGGAAGTDH ---AGAGAAAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00018 Irf4_primary Reverse Complement Reverse Complement Forward 5 8 0.0150506 Species: Mus musculus Consensus sequence (original motif): VDDAYCGAAACYDVA Consensus sequence (reverse complement motif): TBDKGTTTCGMTDHV Alignment: TBDKGTTTCGMTDHV ----CTTTCTCT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Original Motif Original Motif Backward 4 8 0.0153654 Species: Mus musculus Consensus sequence (original motif): BWAHSMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRSDTWV Alignment: BWAHSMGGAAGTWD ---AGAGAAAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Original Motif Original Motif Forward 8 8 0.0177379 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: BDHDDADAGATAAGADHBDHVD -------AGAGAAAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Original Motif Backward 6 8 0.017774 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HBDDDAACAAAGRVBHH ----AGAGAAAG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Original Motif Backward 6 8 0.019138 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH ----AGAGAAAG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00040 Irf5_primary Reverse Complement Reverse Complement Backward 5 8 0.0202543 Species: Mus musculus Consensus sequence (original motif): DDDWAYCGAAACYDV Consensus sequence (reverse complement motif): BDKGTTTCGKTWDDD Alignment: BDKGTTTCGKTWDDD ---CTTTCTCT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 20 Motif name: Motif 20 Consensus sequence (original motif): TCCTCCTGGAA Consensus sequence (reverse complement motif): TTCCAGGAGGA ************************************************************************ Best Matches for Motif ID 20 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Original Motif Backward 8 11 0.0142508 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT -----TTCCAGGAGGA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_primary Original Motif Reverse Complement Forward 3 11 0.0219794 Species: Mus musculus Consensus sequence (original motif): DCTTTCKAGGAATHHV Consensus sequence (reverse complement motif): VHHATTCCTYGAAAGD Alignment: VHHATTCCTYGAAAGD --TCCTCCTGGAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_secondary Original Motif Reverse Complement Forward 3 11 0.0220915 Species: Mus musculus Consensus sequence (original motif): BHDCVCAGCAGGHVD Consensus sequence (reverse complement motif): DVHCCTGCTGBGDDB Alignment: DVHCCTGCTGBGDDB --TCCTCCTGGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_secondary Original Motif Original Motif Forward 5 11 0.0240277 Species: Mus musculus Consensus sequence (original motif): DDDTWCCCCCCGGDRVH Consensus sequence (reverse complement motif): HVKDCCGGGGGGWADDD Alignment: DDDTWCCCCCCGGDRVH ----TCCTCCTGGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Original Motif Reverse Complement Backward 3 11 0.0255161 Species: Mus musculus Consensus sequence (original motif): HHDCVCAGCAKGVVD Consensus sequence (reverse complement motif): DVBCYTGCTGBGDDD Alignment: DVBCYTGCTGBGDDD --TCCTCCTGGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00420 Elk3 Reverse Complement Reverse Complement Forward 7 11 0.0258834 Species: Mus musculus Consensus sequence (original motif): DVBBACCGGAAGYDVVV Consensus sequence (reverse complement motif): VBVDMCTTCCGGTVBVD Alignment: VBVDMCTTCCGGTVBVD ------TTCCAGGAGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_secondary Original Motif Reverse Complement Backward 3 11 0.0261265 Species: Mus musculus Consensus sequence (original motif): DDDCACAGCAKGHVD Consensus sequence (reverse complement motif): DVHCYTGCTGTGHDH Alignment: DVHCYTGCTGTGHDH --TCCTCCTGGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_primary Reverse Complement Reverse Complement Backward 1 11 0.0280194 Species: Mus musculus Consensus sequence (original motif): HVHHACCGGAAGTDHHV Consensus sequence (reverse complement motif): BHHHACTTCCGGTHHBD Alignment: BHHHACTTCCGGTHHBD ------TTCCAGGAGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00410 Elk1 Reverse Complement Reverse Complement Backward 1 11 0.0292751 Species: Mus musculus Consensus sequence (original motif): VVHBACCGGAAGTDBHD Consensus sequence (reverse complement motif): DHBDACTTCCGGTVHVB Alignment: DHBDACTTCCGGTVHVB ------TTCCAGGAGGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00183 Hoxa13 Original Motif Original Motif Backward 4 11 0.0307181 Species: Mus musculus Consensus sequence (original motif): HDHBCTCGTAAAAWBD Consensus sequence (reverse complement motif): DVWTTTTACGAGBHDH Alignment: HDHBCTCGTAAAAWBD --TCCTCCTGGAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 21 Motif name: Motif 21 Consensus sequence (original motif): CTGCTTTCCMAA Consensus sequence (reverse complement motif): TTYGGAAAGCAG ************************************************************************ Best Matches for Motif ID 21 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00018 Irf4_primary Original Motif Reverse Complement Forward 2 12 0.0328573 Species: Mus musculus Consensus sequence (original motif): VDDAYCGAAACYDVA Consensus sequence (reverse complement motif): TBDKGTTTCGMTDHV Alignment: TBDKGTTTCGMTDHV -CTGCTTTCCMAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00015 Ehf_secondary Reverse Complement Reverse Complement Forward 4 12 0.0339295 Species: Mus musculus Consensus sequence (original motif): WDVDABTTCCKAHSDW Consensus sequence (reverse complement motif): WDSHTYGGAAVTDVDW Alignment: WDSHTYGGAAVTDVDW ---TTYGGAAAGCAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Reverse Complement Reverse Complement Forward 2 12 0.0362612 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: DMTWDGTCAGCADWTTH -TTYGGAAAGCAG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00122 Tgif1 Original Motif Reverse Complement Backward 3 12 0.0373175 Species: Mus musculus Consensus sequence (original motif): DABWWTGACAGCTVVBD Consensus sequence (reverse complement motif): DBVVAGCTGTCAWWVTH Alignment: DBVVAGCTGTCAWWVTH ---CTGCTTTCCMAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00258 Tgif2 Original Motif Original Motif Backward 2 12 0.0385167 Species: Mus musculus Consensus sequence (original motif): AABBAGCTGTCAAWVV Consensus sequence (reverse complement motif): VBWTTGACAGCTVBTT Alignment: AABBAGCTGTCAAWVV ---CTGCTTTCCMAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00148 Hdx Reverse Complement Original Motif Forward 2 12 0.0391678 Species: Mus musculus Consensus sequence (original motif): DDKDHGAAATCAHHBHV Consensus sequence (reverse complement motif): BDBDHTGATTTCDHYDD Alignment: DDKDHGAAATCAHHBHV -TTYGGAAAGCAG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00040 Irf5_primary Reverse Complement Original Motif Forward 4 12 0.04057 Species: Mus musculus Consensus sequence (original motif): DDDWAYCGAAACYDV Consensus sequence (reverse complement motif): BDKGTTTCGKTWDDD Alignment: DDDWAYCGAAACYDV ---TTYGGAAAGCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00192 Six1 Original Motif Reverse Complement Forward 5 12 0.0414168 Species: Mus musculus Consensus sequence (original motif): DHDRGGGTATCAHDHBT Consensus sequence (reverse complement motif): AVHDHTGATACCCMDHH Alignment: AVHDHTGATACCCMDHH ----CTGCTTTCCMAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00159 Six2 Original Motif Reverse Complement Forward 5 12 0.0420524 Species: Mus musculus Consensus sequence (original motif): DAKRGGGTATCACDWHT Consensus sequence (reverse complement motif): AHWDGTGATACCCMRTD Alignment: AHWDGTGATACCCMRTD ----CTGCTTTCCMAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00235 Hoxc11 Reverse Complement Original Motif Forward 5 12 0.0421437 Species: Mus musculus Consensus sequence (original motif): HAADGTCGTAAAAHDD Consensus sequence (reverse complement motif): HDHTTTTACGACDTTH Alignment: HAADGTCGTAAAAHDD ----TTYGGAAAGCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 22 Motif name: Motif 22 Consensus sequence (original motif): TTTATGGTGAGCAT Consensus sequence (reverse complement motif): ATGCTCACCATAAA ************************************************************************ Best Matches for Motif ID 22 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00146 Pou6f1_3733.1 Reverse Complement Reverse Complement Forward 3 14 0.0269204 Species: Mus musculus Consensus sequence (original motif): VHHVATAATGAGSTDDH Consensus sequence (reverse complement motif): DHDASCTCATTATVHHB Alignment: DHDASCTCATTATVHHB --ATGCTCACCATAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Original Motif Reverse Complement Backward 10 13 0.511393 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: -DCATDBTGHGCATKMTTBRSWR TTTATGGTGAGCAT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Reverse Complement Original Motif Forward 5 13 0.520342 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: HAAWDTGCTGACDWARH- ----ATGCTCACCATAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Original Motif Original Motif Forward 2 13 0.520462 Species: Mus musculus Consensus sequence (original motif): DBDHCGTGTGCAAMDH Consensus sequence (reverse complement motif): HDYTTGCACACGDHBH Alignment: DBDHCGTGTGCAAMDH- -TTTATGGTGAGCAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_primary Original Motif Reverse Complement Backward 4 13 0.524109 Species: Mus musculus Consensus sequence (original motif): DBBATGCCAACCHVHH Consensus sequence (reverse complement motif): DDBHGGTTGGCATVBD Alignment: -DDBHGGTTGGCATVBD TTTATGGTGAGCAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00072 IRC900814_primary Original Motif Reverse Complement Backward 3 12 1.01715 Species: Mus musculus Consensus sequence (original motif): DDHTACGACAAAWDDB Consensus sequence (reverse complement motif): BHDWTTTGTCGTAHDD Alignment: --DDHTACGACAAAWDDB --TTTATGGTGAGCAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00191 Pou2f2 Original Motif Reverse Complement Forward 3 12 1.0174 Species: Mus musculus Consensus sequence (original motif): BHDTATGCAAATDHDV Consensus sequence (reverse complement motif): BHHDATTTGCATAHHV Alignment: BHDTATGCAAATDHDV-- --TTTATGGTGAGCAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00179 Pou2f3 Original Motif Reverse Complement Forward 3 12 1.01782 Species: Mus musculus Consensus sequence (original motif): BHDTATGCAAATBHDV Consensus sequence (reverse complement motif): BHHVATTTGCATAHHV Alignment: BHDTATGCAAATBHDV-- --TTTATGGTGAGCAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00133 Cdx2 Reverse Complement Original Motif Backward 5 12 1.02211 Species: Mus musculus Consensus sequence (original motif): DVVGGYMATAAAAHKH Consensus sequence (reverse complement motif): HRHTTTTATYMCCVBD Alignment: --DVVGGYMATAAAAHKH ATGCTCACCATAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00173 Hoxc13 Reverse Complement Original Motif Forward 3 12 1.02921 Species: Mus musculus Consensus sequence (original motif): HHDBCTCRTAAAAWHD Consensus sequence (reverse complement motif): DHWTTTTAMGAGBDHH Alignment: DHWTTTTAMGAGBDHH-- --ATGCTCACCATAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 23 Motif name: Motif 23 Consensus sequence (original motif): ATGTWTTCATTMAT Consensus sequence (reverse complement motif): ATYAATGAAWACAT ************************************************************************ Best Matches for Motif ID 23 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00130 Lhx3 Reverse Complement Original Motif Backward 1 14 0.0285638 Species: Mus musculus Consensus sequence (original motif): VDAATTAATTAAWWHHB Consensus sequence (reverse complement motif): VHHWWTTAATTAATTDV Alignment: VDAATTAATTAAWWHHB ---ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00212 Lhx5 Reverse Complement Original Motif Forward 4 14 0.0306386 Species: Mus musculus Consensus sequence (original motif): VDHATTAATTAAAWHHB Consensus sequence (reverse complement motif): VDHWTTTAATTAATHHV Alignment: VDHATTAATTAAAWHHB ---ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00169 Lmx1b Original Motif Original Motif Backward 4 14 0.0343199 Species: Mus musculus Consensus sequence (original motif): VDWWWTTAATTAATDHB Consensus sequence (reverse complement motif): BHDATTAATTAAWWWHB Alignment: VDWWWTTAATTAATDHB ATGTWTTCATTMAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00262 Lhx1 Reverse Complement Original Motif Forward 4 14 0.0349569 Species: Mus musculus Consensus sequence (original motif): VVDATTAATTAAWWAHB Consensus sequence (reverse complement motif): BHTWWTTAATTAATDVV Alignment: VVDATTAATTAAWWAHB ---ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00244 Tlx2 Original Motif Reverse Complement Backward 3 14 0.0361912 Species: Mus musculus Consensus sequence (original motif): BAATHAATTAATAAHWW Consensus sequence (reverse complement motif): WWDTTATTAATTHATTV Alignment: WWDTTATTAATTHATTV -ATGTWTTCATTMAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00188 Lmx1a Reverse Complement Original Motif Backward 1 14 0.0375132 Species: Mus musculus Consensus sequence (original motif): CVHHTTAATTAAWWWHB Consensus sequence (reverse complement motif): BDWWWTTAATTAAHHVG Alignment: BDWWWTTAATTAAHHVG ---ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00155 Hmx2 Reverse Complement Original Motif Backward 1 14 0.0386004 Species: Mus musculus Consensus sequence (original motif): VVAAGCAATTAAHVVDT Consensus sequence (reverse complement motif): ADBVHTTAATTGCTTVB Alignment: VVAAGCAATTAAHVVDT ---ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00157 Hmx3 Reverse Complement Original Motif Forward 4 14 0.0390217 Species: Mus musculus Consensus sequence (original motif): VBVAGCAATTAAHVVAT Consensus sequence (reverse complement motif): ATBVHTTAATTGCTBBB Alignment: VBVAGCAATTAAHVVAT ---ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00172 Prop1 Reverse Complement Original Motif Forward 4 14 0.0397917 Species: Mus musculus Consensus sequence (original motif): VVVVTTAATTAABDDDC Consensus sequence (reverse complement motif): GDDDBTTAATTAABBVV Alignment: VVVVTTAATTAABDDDC ---ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00237 Otp Reverse Complement Reverse Complement Backward 1 14 0.041444 Species: Mus musculus Consensus sequence (original motif): VVHDRTTAATTAAYDDG Consensus sequence (reverse complement motif): CHDMTTAATTAAKDHVV Alignment: CHDMTTAATTAAKDHVV ---ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 24 Motif name: Motif 24 Consensus sequence (original motif): AAAGWCATWAA Consensus sequence (reverse complement motif): TTWATGWCTTT ************************************************************************ Best Matches for Motif ID 24 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00246 Hoxa11 Original Motif Original Motif Backward 5 11 0.011591 Species: Mus musculus Consensus sequence (original motif): HDADGTCGTAAAAHDD Consensus sequence (reverse complement motif): DDDTTTTACGACDTDH Alignment: HDADGTCGTAAAAHDD -AAAGWCATWAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00235 Hoxc11 Original Motif Original Motif Backward 5 11 0.0124232 Species: Mus musculus Consensus sequence (original motif): HAADGTCGTAAAAHDD Consensus sequence (reverse complement motif): HDHTTTTACGACDTTH Alignment: HAADGTCGTAAAAHDD -AAAGWCATWAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00207 Hoxb9 Original Motif Original Motif Forward 1 11 0.0163525 Species: Mus musculus Consensus sequence (original motif): VRRGCMATAAAAHHHD Consensus sequence (reverse complement motif): HDHHTTTTATRGCKMV Alignment: VRRGCMATAAAAHHHD AAAGWCATWAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00197 Hoxc9 Reverse Complement Reverse Complement Forward 5 11 0.0176256 Species: Mus musculus Consensus sequence (original motif): VDVGGTCATTAAHHDB Consensus sequence (reverse complement motif): VDHHTTAATGACCBHV Alignment: VDHHTTAATGACCBHV ----TTWATGWCTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00245 Hoxc10 Original Motif Original Motif Forward 2 11 0.01781 Species: Mus musculus Consensus sequence (original motif): HDDDGTCGTAAADHBB Consensus sequence (reverse complement motif): VBDDTTTACGACDDDH Alignment: HDDDGTCGTAAADHBB -AAAGWCATWAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00117 Hoxd11 Original Motif Original Motif Backward 6 11 0.0206572 Species: Mus musculus Consensus sequence (original motif): HHDVGTCGTAAAAHHHD Consensus sequence (reverse complement motif): DDDHTTTTACGACVDHH Alignment: HHDVGTCGTAAAAHHHD -AAAGWCATWAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00240 Cdx1 Original Motif Original Motif Backward 5 11 0.0231269 Species: Mus musculus Consensus sequence (original motif): DDVGGTMATAAAABKH Consensus sequence (reverse complement motif): HRVTTTTATYACCBDD Alignment: DDVGGTMATAAAABKH -AAAGWCATWAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00213 Hoxa9 Original Motif Original Motif Forward 1 11 0.0241179 Species: Mus musculus Consensus sequence (original motif): DCGGYCATWAAAWTADW Consensus sequence (reverse complement motif): WDTAWTTTWATGKCCGD Alignment: DCGGYCATWAAAWTADW AAAGWCATWAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00133 Cdx2 Original Motif Original Motif Forward 2 11 0.0264981 Species: Mus musculus Consensus sequence (original motif): DVVGGYMATAAAAHKH Consensus sequence (reverse complement motif): HRHTTTTATYMCCVBD Alignment: DVVGGYMATAAAAHKH -AAAGWCATWAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00177 Hoxd12 Original Motif Original Motif Backward 6 11 0.0271901 Species: Mus musculus Consensus sequence (original motif): HHDVGTCGTAAAAHHHD Consensus sequence (reverse complement motif): DHDHTTTTACGACVDHD Alignment: HHDVGTCGTAAAAHHHD -AAAGWCATWAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 25 Motif name: Motif 25 Consensus sequence (original motif): AATAACAGATT Consensus sequence (reverse complement motif): AATCTGTTATT ************************************************************************ Best Matches for Motif ID 25 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00186 Meis1 Original Motif Reverse Complement Backward 4 11 0.0336973 Species: Mus musculus Consensus sequence (original motif): WAVBASCTGTCAAWVH Consensus sequence (reverse complement motif): DBWTTGACAGSTBVTW Alignment: DBWTTGACAGSTBVTW --AATAACAGATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00226 Mrg1 Original Motif Reverse Complement Forward 3 11 0.0361504 Species: Mus musculus Consensus sequence (original motif): WAVBASCTGTCAAWHB Consensus sequence (reverse complement motif): BHWTTGACAGSTBBTW Alignment: BHWTTGACAGSTBBTW --AATAACAGATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00122 Tgif1 Reverse Complement Reverse Complement Backward 4 11 0.0367255 Species: Mus musculus Consensus sequence (original motif): DABWWTGACAGCTVVBD Consensus sequence (reverse complement motif): DBVVAGCTGTCAWWVTH Alignment: DBVVAGCTGTCAWWVTH ---AATCTGTTATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00203 Pknox1 Original Motif Reverse Complement Backward 4 11 0.0373644 Species: Mus musculus Consensus sequence (original motif): DRVSASCTGTCAAWVV Consensus sequence (reverse complement motif): VVWTTGACAGSTSBKD Alignment: VVWTTGACAGSTSBKD --AATAACAGATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00258 Tgif2 Reverse Complement Original Motif Forward 4 11 0.0400385 Species: Mus musculus Consensus sequence (original motif): AABBAGCTGTCAAWVV Consensus sequence (reverse complement motif): VBWTTGACAGCTVBTT Alignment: AABBAGCTGTCAAWVV ---AATCTGTTATT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00166 Barhl1 Reverse Complement Reverse Complement Backward 1 11 0.0408157 Species: Mus musculus Consensus sequence (original motif): HAHAACCAATTARBDH Consensus sequence (reverse complement motif): DDVKTAATTGGTTDTH Alignment: DDVKTAATTGGTTDTH -----AATCTGTTATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00171 Msx3 Reverse Complement Reverse Complement Forward 6 11 0.040907 Species: Mus musculus Consensus sequence (original motif): VAHAACYAATTAABHH Consensus sequence (reverse complement motif): HHVTTAATTKGTTHTV Alignment: HHVTTAATTKGTTHTV -----AATCTGTTATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00109 Obox6 Original Motif Original Motif Backward 5 11 0.0411003 Species: Mus musculus Consensus sequence (original motif): AHAADCGGATTAWHB Consensus sequence (reverse complement motif): BHWTAATCCGDTTHT Alignment: AHAADCGGATTAWHB AATAACAGATT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00205 Pknox2 Original Motif Reverse Complement Backward 4 11 0.0430579 Species: Mus musculus Consensus sequence (original motif): HAVSRSCTGTCAATHB Consensus sequence (reverse complement motif): VHATTGACAGSKSVTH Alignment: VHATTGACAGSKSVTH --AATAACAGATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00081 Mybl1_primary Reverse Complement Original Motif Backward 3 11 0.0431149 Species: Mus musculus Consensus sequence (original motif): HDDDHAACCGTTAHHHD Consensus sequence (reverse complement motif): DHHHTAACGGTTHDHDH Alignment: HDDDHAACCGTTAHHHD ----AATCTGTTATT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 26 Motif name: Motif 26 Consensus sequence (original motif): CTGTTTTWAT Consensus sequence (reverse complement motif): ATWAAAACAG ************************************************************************ Best Matches for Motif ID 26 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00207 Hoxb9 Reverse Complement Original Motif Backward 1 10 0.030167 Species: Mus musculus Consensus sequence (original motif): VRRGCMATAAAAHHHD Consensus sequence (reverse complement motif): HDHHTTTTATRGCKMV Alignment: VRRGCMATAAAAHHHD ------ATWAAAACAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00213 Hoxa9 Reverse Complement Original Motif Forward 7 10 0.0323471 Species: Mus musculus Consensus sequence (original motif): DCGGYCATWAAAWTADW Consensus sequence (reverse complement motif): WDTAWTTTWATGKCCGD Alignment: DCGGYCATWAAAWTADW ------ATWAAAACAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Original Motif Reverse Complement Backward 7 10 0.0362663 Species: Mus musculus Consensus sequence (original motif): VRHCCAATAAAAWHHV Consensus sequence (reverse complement motif): VDHWTTTTATTGGDKB Alignment: VDHWTTTTATTGGDKB CTGTTTTWAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Reverse Complement Forward 5 10 0.0372816 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: VVVWTTGTTTAMATTWD ----CTGTTTTWAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Original Motif Reverse Complement Forward 5 10 0.0386784 Species: Mus musculus Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: BBVTTTGTTTACATTDD ----CTGTTTTWAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Original Motif Backward 1 10 0.0390272 Species: Mus musculus Consensus sequence (original motif): HDHYYAATAAAAHHHH Consensus sequence (reverse complement motif): HDHHTTTTATTKKHDD Alignment: HDHYYAATAAAAHHHH ------ATWAAAACAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_secondary Original Motif Reverse Complement Forward 3 10 0.0396761 Species: Mus musculus Consensus sequence (original motif): HHHAYAAYAACAHHH Consensus sequence (reverse complement motif): HDDTGTTKTTKTHHD Alignment: HDDTGTTKTTKTHHD --CTGTTTTWAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Original Motif Reverse Complement Backward 7 10 0.0450256 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB -CTGTTTTWAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondary Reverse Complement Original Motif Forward 3 10 0.0451436 Species: Mus musculus Consensus sequence (original motif): ADDDYAWAACAAMAHH Consensus sequence (reverse complement motif): HDTYTTGTTWTKDDDT Alignment: ADDDYAWAACAAMAHH --ATWAAAACAG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_primary Reverse Complement Reverse Complement Forward 2 10 0.0452358 Species: Mus musculus Consensus sequence (original motif): THATTGTTVTHAWH Consensus sequence (reverse complement motif): DWTHAVAACAATHA Alignment: DWTHAVAACAATHA -ATWAAAACAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 27 Motif name: Motif 27 Consensus sequence (original motif): ATTCTGTRAAG Consensus sequence (reverse complement motif): CTTKACAGAAT ************************************************************************ Best Matches for Motif ID 27 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_2205.1 Original Motif Original Motif Backward 4 11 0.022933 Species: Mus musculus Consensus sequence (original motif): AVDHCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGHHVT Alignment: AVDHCGCTGTWAWDVVW ---ATTCTGTRAAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00186 Meis1 Reverse Complement Reverse Complement Backward 4 11 0.0231555 Species: Mus musculus Consensus sequence (original motif): WAVBASCTGTCAAWVH Consensus sequence (reverse complement motif): DBWTTGACAGSTBVTW Alignment: DBWTTGACAGSTBVTW --CTTKACAGAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00258 Tgif2 Reverse Complement Reverse Complement Forward 3 11 0.0232158 Species: Mus musculus Consensus sequence (original motif): AABBAGCTGTCAAWVV Consensus sequence (reverse complement motif): VBWTTGACAGCTVBTT Alignment: VBWTTGACAGCTVBTT --CTTKACAGAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00012 Bbx_primary Original Motif Original Motif Forward 3 11 0.023325 Species: Mus musculus Consensus sequence (original motif): HADTTCAWTGAABWD Consensus sequence (reverse complement motif): HWBTTCAWTGAADTH Alignment: HADTTCAWTGAABWD --ATTCTGTRAAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00226 Mrg1 Reverse Complement Reverse Complement Forward 3 11 0.0239764 Species: Mus musculus Consensus sequence (original motif): WAVBASCTGTCAAWHB Consensus sequence (reverse complement motif): BHWTTGACAGSTBBTW Alignment: BHWTTGACAGSTBBTW --CTTKACAGAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00203 Pknox1 Reverse Complement Reverse Complement Backward 4 11 0.025386 Species: Mus musculus Consensus sequence (original motif): DRVSASCTGTCAAWVV Consensus sequence (reverse complement motif): VVWTTGACAGSTSBKD Alignment: VVWTTGACAGSTSBKD --CTTKACAGAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_1765.2 Original Motif Original Motif Backward 4 11 0.0259448 Species: Mus musculus Consensus sequence (original motif): AVDVCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGBHBT Alignment: AVDVCGCTGTWAWDVVW ---ATTCTGTRAAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00205 Pknox2 Reverse Complement Reverse Complement Forward 3 11 0.0264392 Species: Mus musculus Consensus sequence (original motif): HAVSRSCTGTCAATHB Consensus sequence (reverse complement motif): VHATTGACAGSKSVTH Alignment: VHATTGACAGSKSVTH --CTTKACAGAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_primary Reverse Complement Original Motif Forward 3 11 0.0287967 Species: Mus musculus Consensus sequence (original motif): HHDWTSAATGAATDDB Consensus sequence (reverse complement motif): VDHATTCATTSAWDDH Alignment: HHDWTSAATGAATDDB --CTTKACAGAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00210 Mrg2 Reverse Complement Reverse Complement Forward 3 11 0.0289027 Species: Mus musculus Consensus sequence (original motif): DADBASCTGTCAAHVH Consensus sequence (reverse complement motif): DBHTTGACAGSTVDTD Alignment: DBHTTGACAGSTVDTD --CTTKACAGAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 28 Motif name: Motif 28 Consensus sequence (original motif): ATTTAGTAAA Consensus sequence (reverse complement motif): TTTACTAAAT ************************************************************************ Best Matches for Motif ID 28 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00130 Lhx3 Reverse Complement Reverse Complement Backward 4 10 0.00271264 Species: Mus musculus Consensus sequence (original motif): VDAATTAATTAAWWHHB Consensus sequence (reverse complement motif): VHHWWTTAATTAATTDV Alignment: VHHWWTTAATTAATTDV ----TTTACTAAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_primary Original Motif Reverse Complement Backward 4 10 0.00275365 Species: Mus musculus Consensus sequence (original motif): BTATGTACTAATWH Consensus sequence (reverse complement motif): HWATTAGTACATAV Alignment: HWATTAGTACATAV -ATTTAGTAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00212 Lhx5 Reverse Complement Reverse Complement Forward 5 10 0.00285069 Species: Mus musculus Consensus sequence (original motif): VDHATTAATTAAAWHHB Consensus sequence (reverse complement motif): VDHWTTTAATTAATHHV Alignment: VDHWTTTAATTAATHHV ----TTTACTAAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00169 Lmx1b Original Motif Reverse Complement Forward 4 10 0.00676865 Species: Mus musculus Consensus sequence (original motif): VDWWWTTAATTAATDHB Consensus sequence (reverse complement motif): BHDATTAATTAAWWWHB Alignment: BHDATTAATTAAWWWHB ---ATTTAGTAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00177 Hoxd12 Reverse Complement Reverse Complement Forward 6 10 0.00747245 Species: Mus musculus Consensus sequence (original motif): HHDVGTCGTAAAAHHHD Consensus sequence (reverse complement motif): DHDHTTTTACGACVDHD Alignment: DHDHTTTTACGACVDHD -----TTTACTAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00135 Hoxc12 Reverse Complement Reverse Complement Forward 6 10 0.0076403 Species: Mus musculus Consensus sequence (original motif): HHRGGTCGTAAAWHBDH Consensus sequence (reverse complement motif): DDVHWTTTACGACCKHH Alignment: DDVHWTTTACGACCKHH -----TTTACTAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00117 Hoxd11 Reverse Complement Reverse Complement Backward 3 10 0.00864633 Species: Mus musculus Consensus sequence (original motif): HHDVGTCGTAAAAHHHD Consensus sequence (reverse complement motif): DDDHTTTTACGACVDHH Alignment: DDDHTTTTACGACVDHH -----TTTACTAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00142 Uncx4.1 Reverse Complement Reverse Complement Backward 5 10 0.0100967 Species: Mus musculus Consensus sequence (original motif): VDHDATTAATTAABVVG Consensus sequence (reverse complement motif): CVVBTTAATTAATDHDV Alignment: CVVBTTAATTAATDHDV ---TTTACTAAAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00235 Hoxc11 Reverse Complement Reverse Complement Forward 5 10 0.010176 Species: Mus musculus Consensus sequence (original motif): HAADGTCGTAAAAHDD Consensus sequence (reverse complement motif): HDHTTTTACGACDTTH Alignment: HDHTTTTACGACDTTH ----TTTACTAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00246 Hoxa11 Reverse Complement Reverse Complement Forward 5 10 0.0105914 Species: Mus musculus Consensus sequence (original motif): HDADGTCGTAAAAHDD Consensus sequence (reverse complement motif): DDDTTTTACGACDTDH Alignment: DDDTTTTACGACDTDH ----TTTACTAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 29 Motif name: Motif 29 Consensus sequence (original motif): ATTTATTGCTA Consensus sequence (reverse complement motif): TAGCAATAAAT ************************************************************************ Best Matches for Motif ID 29 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00104 Hmx1 Reverse Complement Original Motif Forward 3 11 0.00115362 Species: Mus musculus Consensus sequence (original motif): VVVAGCAATTAADGVDB Consensus sequence (reverse complement motif): VDBCDTTAATTGCTBVB Alignment: VVVAGCAATTAADGVDB --TAGCAATAAAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00155 Hmx2 Original Motif Reverse Complement Backward 3 11 0.00544084 Species: Mus musculus Consensus sequence (original motif): VVAAGCAATTAAHVVDT Consensus sequence (reverse complement motif): ADBVHTTAATTGCTTVB Alignment: ADBVHTTAATTGCTTVB ----ATTTATTGCTA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00157 Hmx3 Reverse Complement Original Motif Backward 5 11 0.00624569 Species: Mus musculus Consensus sequence (original motif): VBVAGCAATTAAHVVAT Consensus sequence (reverse complement motif): ATBVHTTAATTGCTBBB Alignment: VBVAGCAATTAAHVVAT --TAGCAATAAAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00263 Hoxb8 Reverse Complement Original Motif Backward 4 11 0.00742166 Species: Mus musculus Consensus sequence (original motif): HVBDGYAATTAATADW Consensus sequence (reverse complement motif): WDTATTAATTKCHBVH Alignment: HVBDGYAATTAATADW --TAGCAATAAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00133 Cdx2 Reverse Complement Original Motif Forward 3 11 0.0101377 Species: Mus musculus Consensus sequence (original motif): DVVGGYMATAAAAHKH Consensus sequence (reverse complement motif): HRHTTTTATYMCCVBD Alignment: DVVGGYMATAAAAHKH --TAGCAATAAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00207 Hoxb9 Reverse Complement Original Motif Backward 5 11 0.0107409 Species: Mus musculus Consensus sequence (original motif): VRRGCMATAAAAHHHD Consensus sequence (reverse complement motif): HDHHTTTTATRGCKMV Alignment: VRRGCMATAAAAHHHD -TAGCAATAAAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00145 Barhl2 Reverse Complement Original Motif Backward 3 11 0.0138179 Species: Mus musculus Consensus sequence (original motif): HAMAAHCAATTAABHH Consensus sequence (reverse complement motif): HHBTTAATTGDTTYTH Alignment: HAMAAHCAATTAABHH ---TAGCAATAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Reverse Complement Original Motif Forward 10 11 0.0142512 Species: Mus musculus Consensus sequence (original motif): HDTBHHCCHTAGCAACVVDHHHH Consensus sequence (reverse complement motif): HHHHDVVGTTGCTAHGGDHBAHH Alignment: HDTBHHCCHTAGCAACVVDHHHH ---------TAGCAATAAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Original Motif Forward 2 11 0.01435 Species: Mus musculus Consensus sequence (original motif): HDHYYAATAAAAHHHH Consensus sequence (reverse complement motif): HDHHTTTTATTKKHDD Alignment: HDHYYAATAAAAHHHH -TAGCAATAAAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00168 Hoxd8 Reverse Complement Reverse Complement Forward 1 11 0.0169109 Species: Mus musculus Consensus sequence (original motif): TAADTAATTAATRGHTH Consensus sequence (reverse complement motif): HADCMATTAATTADTTA Alignment: HADCMATTAATTADTTA TAGCAATAAAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 30 Motif name: Motif 30 Consensus sequence (original motif): TTGCTGCTTTT Consensus sequence (reverse complement motif): AAAAGCAGCAA ************************************************************************ Best Matches for Motif ID 30 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00027 Osr1_primary Original Motif Reverse Complement Forward 3 11 0.00770725 Species: Mus musculus Consensus sequence (original motif): HHDHACRGTAGCHVHD Consensus sequence (reverse complement motif): DHBHGCTACKGTHDHH Alignment: DHBHGCTACKGTHDHH --TTGCTGCTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00044 Mafk_secondary Original Motif Reverse Complement Backward 3 11 0.0113442 Species: Mus musculus Consensus sequence (original motif): VHAAAAADTGCAHBR Consensus sequence (reverse complement motif): MBHTGCADTTTTTHV Alignment: MBHTGCADTTTTTHV --TTGCTGCTTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00052 Osr2_primary Original Motif Reverse Complement Forward 3 11 0.0117169 Species: Mus musculus Consensus sequence (original motif): HHVHACRGTAGCHHHD Consensus sequence (reverse complement motif): HHHHGCTACKGTHVHH Alignment: HHHHGCTACKGTHVHH --TTGCTGCTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Original Motif Original Motif Forward 5 11 0.0149918 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: HAAWDTGCTGACDWARH ----TTGCTGCTTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primary Original Motif Reverse Complement Backward 2 11 0.0204182 Species: Mus musculus Consensus sequence (original motif): HDYAAAHAAMAADHD Consensus sequence (reverse complement motif): HHHTTRTTDTTTKDH Alignment: HHHTTRTTDTTTKDH ---TTGCTGCTTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Original Motif Reverse Complement Forward 5 11 0.0211824 Species: Mus musculus Consensus sequence (original motif): HHDCVCAGCAKGVVD Consensus sequence (reverse complement motif): DVBCYTGCTGBGDDD Alignment: DVBCYTGCTGBGDDD ----TTGCTGCTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00145 Barhl2 Original Motif Reverse Complement Backward 2 11 0.0241392 Species: Mus musculus Consensus sequence (original motif): HAMAAHCAATTAABHH Consensus sequence (reverse complement motif): HHBTTAATTGDTTYTH Alignment: HHBTTAATTGDTTYTH ----TTGCTGCTTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Reverse Complement Reverse Complement Backward 9 11 0.0241736 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: TCDAMVBGACGCMAKDDDVBBD ---AAAAGCAGCAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_secondary Original Motif Reverse Complement Forward 5 11 0.0245177 Species: Mus musculus Consensus sequence (original motif): BHDCVCAGCAGGHVD Consensus sequence (reverse complement motif): DVHCCTGCTGBGDDB Alignment: DVHCCTGCTGBGDDB ----TTGCTGCTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00185 Pbx1 Original Motif Reverse Complement Forward 7 11 0.0245464 Species: Mus musculus Consensus sequence (original motif): HYAYMCATCAAWHWDVV Consensus sequence (reverse complement motif): BVDWHWTTGATGRKTKH Alignment: BVDWHWTTGATGRKTKH ------TTGCTGCTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 31 Motif name: Motif 31 Consensus sequence (original motif): TTGTTGATTTT Consensus sequence (reverse complement motif): AAAATCAACAA ************************************************************************ Best Matches for Motif ID 31 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Reverse Complement Original Motif Forward 3 11 0 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: DWAATRTAAACAAWVVB --AAAATCAACAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Reverse Complement Original Motif Backward 5 11 0.00256455 Species: Mus musculus Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: DDAATGTAAACAAAVVB --AAAATCAACAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Reverse Complement Original Motif Backward 5 11 0.00497188 Species: Mus musculus Consensus sequence (original motif): HDHADGTAAACAAAVVH Consensus sequence (reverse complement motif): DVVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH --AAAATCAACAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00227 Duxl Original Motif Reverse Complement Forward 3 11 0.00721745 Species: Mus musculus Consensus sequence (original motif): YRACCCAATCAACVVHV Consensus sequence (reverse complement motif): VHVVGTTGATTGGGTMK Alignment: VHVVGTTGATTGGGTMK --TTGTTGATTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primary Original Motif Reverse Complement Backward 2 11 0.0101946 Species: Mus musculus Consensus sequence (original motif): HDYAAAHAAMAADHD Consensus sequence (reverse complement motif): HHHTTRTTDTTTKDH Alignment: HHHTTRTTDTTTKDH ---TTGTTGATTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Reverse Complement Original Motif Forward 3 11 0.0135831 Species: Mus musculus Consensus sequence (original motif): HHWAWGTAAAYAAAVDB Consensus sequence (reverse complement motif): BDVTTTKTTTACWTWHH Alignment: HHWAWGTAAAYAAAVDB --AAAATCAACAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00145 Barhl2 Reverse Complement Original Motif Forward 2 11 0.0139419 Species: Mus musculus Consensus sequence (original motif): HAMAAHCAATTAABHH Consensus sequence (reverse complement motif): HHBTTAATTGDTTYTH Alignment: HAMAAHCAATTAABHH -AAAATCAACAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00041 Foxj1_primary Reverse Complement Original Motif Backward 6 11 0.0164816 Species: Mus musculus Consensus sequence (original motif): HDHRTAAACAAAHDDD Consensus sequence (reverse complement motif): DDDHTTTGTTTAMHDH Alignment: HDHRTAAACAAAHDDD AAAATCAACAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_secondary Original Motif Reverse Complement Backward 3 11 0.0220198 Species: Mus musculus Consensus sequence (original motif): HHHAYAAYAACAHHH Consensus sequence (reverse complement motif): HDDTGTTKTTKTHHD Alignment: HDDTGTTKTTKTHHD --TTGTTGATTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_secondary Original Motif Reverse Complement Backward 2 11 0.0242838 Species: Mus musculus Consensus sequence (original motif): VDVVATCAATCAHBHD Consensus sequence (reverse complement motif): DHVDTGATTGATVBDV Alignment: DHVDTGATTGATVBDV ----TTGTTGATTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 32 Motif name: Motif 32 Consensus sequence (original motif): TTACWGTTT Consensus sequence (reverse complement motif): AAACWGTAA ************************************************************************ Best Matches for Motif ID 32 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00052 Osr2_primary Reverse Complement Original Motif Forward 3 9 0.0202622 Species: Mus musculus Consensus sequence (original motif): HHVHACRGTAGCHHHD Consensus sequence (reverse complement motif): HHHHGCTACKGTHVHH Alignment: HHVHACRGTAGCHHHD --AAACWGTAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00027 Osr1_primary Reverse Complement Original Motif Backward 6 9 0.0205632 Species: Mus musculus Consensus sequence (original motif): HHDHACRGTAGCHVHD Consensus sequence (reverse complement motif): DHBHGCTACKGTHDHH Alignment: HHDHACRGTAGCHVHD --AAACWGTAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Original Motif Reverse Complement Backward 1 9 0.0212082 Species: Mus musculus Consensus sequence (original motif): HHWAWGTAAAYAAAVDB Consensus sequence (reverse complement motif): BDVTTTKTTTACWTWHH Alignment: HHWAWGTAAAYAAAVDB --------TTACWGTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Reverse Complement Forward 9 9 0.0213447 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: VVVWTTGTTTAMATTWD --------TTACWGTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00081 Mybl1_primary Original Motif Reverse Complement Backward 5 9 0.0237771 Species: Mus musculus Consensus sequence (original motif): HDDDHAACCGTTAHHHD Consensus sequence (reverse complement motif): DHHHTAACGGTTHDHDH Alignment: DHHHTAACGGTTHDHDH ----TTACWGTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Original Motif Reverse Complement Forward 9 9 0.0240192 Species: Mus musculus Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: BBVTTTGTTTACATTDD --------TTACWGTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00186 Meis1 Original Motif Reverse Complement Backward 4 9 0.0245505 Species: Mus musculus Consensus sequence (original motif): WAVBASCTGTCAAWVH Consensus sequence (reverse complement motif): DBWTTGACAGSTBVTW Alignment: DBWTTGACAGSTBVTW ----TTACWGTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00092 Myb_primary Reverse Complement Original Motif Forward 5 9 0.0258406 Species: Mus musculus Consensus sequence (original motif): HDDDHAACCGTTAHHHD Consensus sequence (reverse complement motif): DHHHTAACGGTTHHHDH Alignment: HDDDHAACCGTTAHHHD ----AAACWGTAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00226 Mrg1 Original Motif Reverse Complement Backward 4 9 0.0267732 Species: Mus musculus Consensus sequence (original motif): WAVBASCTGTCAAWHB Consensus sequence (reverse complement motif): BHWTTGACAGSTBBTW Alignment: BHWTTGACAGSTBBTW ----TTACWGTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00203 Pknox1 Original Motif Reverse Complement Backward 4 9 0.0277187 Species: Mus musculus Consensus sequence (original motif): DRVSASCTGTCAAWVV Consensus sequence (reverse complement motif): VVWTTGACAGSTSBKD Alignment: VVWTTGACAGSTSBKD ----TTACWGTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 33 Motif name: Motif 33 Consensus sequence (original motif): TTTAATGTYTTTWA Consensus sequence (reverse complement motif): TWAAAKACATTAAA ************************************************************************ Best Matches for Motif ID 33 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00171 Msx3 Original Motif Reverse Complement Forward 3 14 0.0143635 Species: Mus musculus Consensus sequence (original motif): VAHAACYAATTAABHH Consensus sequence (reverse complement motif): HHVTTAATTKGTTHTV Alignment: HHVTTAATTKGTTHTV --TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00145 Barhl2 Original Motif Reverse Complement Backward 1 14 0.0149596 Species: Mus musculus Consensus sequence (original motif): HAMAAHCAATTAABHH Consensus sequence (reverse complement motif): HHBTTAATTGDTTYTH Alignment: HHBTTAATTGDTTYTH --TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00170 Isl2 Original Motif Reverse Complement Forward 3 14 0.0226802 Species: Mus musculus Consensus sequence (original motif): MHHAAYYMATTAADWH Consensus sequence (reverse complement motif): HWDTTAATYKMTTHHR Alignment: HWDTTAATYKMTTHHR --TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00119 Nkx2-9 Reverse Complement Reverse Complement Backward 1 14 0.0229232 Species: Mus musculus Consensus sequence (original motif): TTTDAAGTACTTVAADH Consensus sequence (reverse complement motif): HDTTBAAGTACTTDAAA Alignment: HDTTBAAGTACTTDAAA ---TWAAAKACATTAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00216 Obox1 Reverse Complement Original Motif Forward 1 14 0.0255021 Species: Mus musculus Consensus sequence (original motif): DDARGGGGATTAACDHH Consensus sequence (reverse complement motif): DHDGTTAATCCCCKTDD Alignment: DHDGTTAATCCCCKTDD TWAAAKACATTAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00051 Sox8_primary Original Motif Original Motif Forward 4 14 0.0266643 Species: Mus musculus Consensus sequence (original motif): DDATBWATTGTTHHDDD Consensus sequence (reverse complement motif): DDDHDAACAATWBATDD Alignment: DDATBWATTGTTHHDDD ---TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00091 Sox5_primary Original Motif Reverse Complement Forward 3 14 0.0288082 Species: Mus musculus Consensus sequence (original motif): DHDDGAACAATWDDHD Consensus sequence (reverse complement motif): DHDDWATTGTTCDDHD Alignment: DHDDWATTGTTCDDHD --TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00096 Sox13_primary Original Motif Reverse Complement Backward 1 14 0.0301291 Species: Mus musculus Consensus sequence (original motif): DHDRGAACAATWWDHW Consensus sequence (reverse complement motif): WHDWWATTGTTCKDHD Alignment: WHDWWATTGTTCKDHD --TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00166 Barhl1 Original Motif Reverse Complement Forward 3 14 0.0303352 Species: Mus musculus Consensus sequence (original motif): HAHAACCAATTARBDH Consensus sequence (reverse complement motif): DDVKTAATTGGTTDTH Alignment: DDVKTAATTGGTTDTH --TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Original Motif Backward 8 14 0.0304836 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: BDHDDADAGATAAGADHBDHVD -TWAAAKACATTAAA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 34 Motif name: Motif 34 Consensus sequence (original motif): AAAGATGA Consensus sequence (reverse complement motif): TCATCTTT ************************************************************************ Best Matches for Motif ID 34 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Backward 6 8 0.0235901 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV ---------TCATCTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Reverse Complement Reverse Complement Backward 5 8 0.0248583 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCACVHD Consensus sequence (reverse complement motif): HHVGTGACCTTTDVDD Alignment: HHVGTGACCTTTDVDD ----TCATCTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_primary Reverse Complement Reverse Complement Forward 5 8 0.0320787 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCAHVHB Consensus sequence (reverse complement motif): BHVDTGACCTTTDVDD Alignment: BHVDTGACCTTTDVDD ----TCATCTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00114 Homez Original Motif Reverse Complement Backward 4 8 0.0353395 Species: Mus musculus Consensus sequence (original motif): AHWWMATCGTTTTBADD Consensus sequence (reverse complement motif): HDTVAAAACGATRWWHT Alignment: HDTVAAAACGATRWWHT ------AAAGATGA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Reverse Complement Reverse Complement Backward 5 8 0.0375145 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: VBBDMYCATCTGVHHBH -----TCATCTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00100 Gata6_primary Reverse Complement Reverse Complement Backward 4 8 0.0391681 Species: Mus musculus Consensus sequence (original motif): DHDVDWGATAAGADDHV Consensus sequence (reverse complement motif): VHDDTCTTATCWHBDHD Alignment: VHDDTCTTATCWHBDHD ------TCATCTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00419 Spic Original Motif Original Motif Backward 6 8 0.0437411 Species: Mus musculus Consensus sequence (original motif): VAAAGMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRCTTTB Alignment: VAAAGMGGAAGTWD -AAAGATGA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00199 Six4 Reverse Complement Reverse Complement Backward 1 8 0.0467222 Species: Mus musculus Consensus sequence (original motif): ADDHATGACACCBHBBV Consensus sequence (reverse complement motif): BBVHVGGTGTCATHDDT Alignment: BBVHVGGTGTCATHDDT ---------TCATCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00219 Cutl1_3494.2 Original Motif Original Motif Backward 7 8 0.0483168 Species: Mus musculus Consensus sequence (original motif): DAVTGATRATCAHTD Consensus sequence (reverse complement motif): DADTGATMATCABTD Alignment: DAVTGATRATCAHTD -AAAGATGA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00208 Obox5_3963.2 Original Motif Original Motif Forward 4 8 0.0488248 Species: Mus musculus Consensus sequence (original motif): VRVAGGGATTAAHTVWV Consensus sequence (reverse complement motif): VWBAHTTAATCCCTVKB Alignment: VRVAGGGATTAAHTVWV ---AAAGATGA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 35 Motif name: Motif 35 Consensus sequence (original motif): AGATGYTCTTG Consensus sequence (reverse complement motif): CAAGAKCATCT ************************************************************************ Best Matches for Motif ID 35 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Reverse Complement Original Motif Backward 3 11 0.0140765 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: DHDBCAAGGTCAHVBDH ----CAAGAKCATCT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Original Motif Forward 7 11 0.0175222 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: HVDDVCAGATGKYHBBV ------AGATGYTCTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00019 Zbtb12_primary Original Motif Original Motif Backward 6 11 0.0209646 Species: Mus musculus Consensus sequence (original motif): BDHRBGTTCTAGATCVB Consensus sequence (reverse complement motif): BBGATCTAGAACBKHDB Alignment: BDHRBGTTCTAGATCVB -AGATGYTCTTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Original Motif Original Motif Forward 7 11 0.0302699 Species: Mus musculus Consensus sequence (original motif): BBYVVCAGCTGCBVHHD Consensus sequence (reverse complement motif): HHDVVGCAGCTGVBKVB Alignment: BBYVVCAGCTGCBVHHD ------AGATGYTCTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Reverse Complement Original Motif Backward 2 11 0.0317546 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCACVHD Consensus sequence (reverse complement motif): HHVGTGACCTTTDVDD Alignment: DHBHAAAGGTCACVHD ----CAAGAKCATCT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_secondary Original Motif Reverse Complement Forward 1 11 0.0329048 Species: Mus musculus Consensus sequence (original motif): HHHAYAAYAACAHHH Consensus sequence (reverse complement motif): HDDTGTTKTTKTHHD Alignment: HDDTGTTKTTKTHHD AGATGYTCTTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Original Motif Original Motif Forward 9 11 0.0350601 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH --------AGATGYTCTTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Original Motif Original Motif Backward 6 11 0.0366699 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH ------AGATGYTCTTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_secondary Original Motif Reverse Complement Forward 5 11 0.0367981 Species: Mus musculus Consensus sequence (original motif): BDDRVGACCACCHBDVB Consensus sequence (reverse complement motif): BBDVHGGTGGTCBKDDB Alignment: BBDVHGGTGGTCBKDDB ----AGATGYTCTTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Reverse Complement Original Motif Forward 6 11 0.038145 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: HTBVVVDGGACCACCCRGRDBG -----CAAGAKCATCT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 36 Motif name: Motif 36 Consensus sequence (original motif): TGGTGTCA Consensus sequence (reverse complement motif): TGACACCA ************************************************************************ Best Matches for Motif ID 36 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00199 Six4 Reverse Complement Original Motif Backward 5 8 0 Species: Mus musculus Consensus sequence (original motif): ADDHATGACACCBHBBV Consensus sequence (reverse complement motif): BBVHVGGTGTCATHDDT Alignment: ADDHATGACACCBHBBV -----TGACACCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00388 Six6_2267.4 Reverse Complement Reverse Complement Backward 5 8 0.0335611 Species: Mus musculus Consensus sequence (original motif): DATRGGGTATCAHDWHT Consensus sequence (reverse complement motif): AHWDHTGATACCCKATD Alignment: AHWDHTGATACCCKATD -----TGACACCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00159 Six2 Reverse Complement Reverse Complement Backward 5 8 0.0342894 Species: Mus musculus Consensus sequence (original motif): DAKRGGGTATCACDWHT Consensus sequence (reverse complement motif): AHWDGTGATACCCMRTD Alignment: AHWDGTGATACCCMRTD -----TGACACCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Reverse Complement Original Motif Forward 6 8 0.034602 Species: Mus musculus Consensus sequence (original motif): DBHBDTGACCCCDHVHB Consensus sequence (reverse complement motif): VHBHDGGGGTCAHBHBD Alignment: DBHBDTGACCCCDHVHB -----TGACACCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Original Motif Backward 6 8 0.0349175 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH ----TGGTGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00122 Tgif1 Reverse Complement Original Motif Forward 6 8 0.0354712 Species: Mus musculus Consensus sequence (original motif): DABWWTGACAGCTVVBD Consensus sequence (reverse complement motif): DBVVAGCTGTCAWWVTH Alignment: DABWWTGACAGCTVVBD -----TGACACCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00192 Six1 Reverse Complement Reverse Complement Forward 6 8 0.0355547 Species: Mus musculus Consensus sequence (original motif): DHDRGGGTATCAHDHBT Consensus sequence (reverse complement motif): AVHDHTGATACCCMDHH Alignment: AVHDHTGATACCCMDHH -----TGACACCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00388 Six6_2267.5 Reverse Complement Reverse Complement Backward 5 8 0.035579 Species: Mus musculus Consensus sequence (original motif): DDDRGGGTATCAWHWHT Consensus sequence (reverse complement motif): AHWHWTGATACCCKDDD Alignment: AHWHWTGATACCCKDDD -----TGACACCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_primary Original Motif Original Motif Backward 6 8 0.0362156 Species: Mus musculus Consensus sequence (original motif): BVHDAGGTGTGAAAHHH Consensus sequence (reverse complement motif): HHHTTTCACACCTDHBV Alignment: BVHDAGGTGTGAAAHHH ----TGGTGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00258 Tgif2 Reverse Complement Reverse Complement Forward 5 8 0.0373826 Species: Mus musculus Consensus sequence (original motif): AABBAGCTGTCAAWVV Consensus sequence (reverse complement motif): VBWTTGACAGCTVBTT Alignment: VBWTTGACAGCTVBTT ----TGACACCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 37 Motif name: Motif 37 Consensus sequence (original motif): ACTTTGG Consensus sequence (reverse complement motif): CCAAAGT ************************************************************************ Best Matches for Motif ID 37 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_secondary Reverse Complement Original Motif Backward 8 7 0 Species: Mus musculus Consensus sequence (original motif): BBHHAAAGTCCAMTHH Consensus sequence (reverse complement motif): HHAYTGGACTTTHDBV Alignment: BBHHAAAGTCCAMTHH --CCAAAGT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Reverse Complement Reverse Complement Forward 7 7 0.0128381 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD ------CCAAAGT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Reverse Complement Original Motif Backward 8 7 0.0140846 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: DHDBCAAGGTCAHVBDH ---CCAAAGT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Reverse Complement Reverse Complement Backward 5 7 0.0141156 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: BDDASATCAAAGGMDDD ------CCAAAGT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Reverse Complement Forward 5 7 0.0159798 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HHBBMCTTTGTTHDDBH ----ACTTTGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Reverse Complement Forward 5 7 0.0181605 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HHBTMCTTTGTTMDDVH ----ACTTTGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Original Motif Reverse Complement Forward 5 7 0.0200761 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: HHHKVCTTTGATSTHHH ----ACTTTGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Original Motif Reverse Complement Forward 5 7 0.0230245 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: HHHTCCTTTGATSTHHV ----ACTTTGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Reverse Complement Reverse Complement Backward 5 7 0.0283328 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGKWTH Consensus sequence (reverse complement motif): HAWYCCGGAAGTHBBD Alignment: HAWYCCGGAAGTHBBD -----CCAAAGT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00418 Etv6 Reverse Complement Reverse Complement Backward 6 7 0.0287289 Species: Mus musculus Consensus sequence (original motif): DVHBTACTTCCGGHTHB Consensus sequence (reverse complement motif): BHAHCCGGAAGTABDVD Alignment: BHAHCCGGAAGTABDVD -----CCAAAGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 38 Motif name: Motif 38 Consensus sequence (original motif): ATKAYTTTG Consensus sequence (reverse complement motif): CAAAKTYAT ************************************************************************ Best Matches for Motif ID 38 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Original Motif Reverse Complement Forward 5 9 0.0159205 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: HHBVHTGACCTTGVDHD ----ATKAYTTTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Original Motif Reverse Complement Forward 2 9 0.0182772 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: HHHTCCTTTGATSTHHV -ATKAYTTTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Original Motif Reverse Complement Forward 2 9 0.01865 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: HHHKVCTTTGATSTHHH -ATKAYTTTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Reverse Complement Backward 8 9 0.0192718 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HHBBMCTTTGTTHDDBH -ATKAYTTTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Reverse Complement Forward 2 9 0.022524 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HHBTMCTTTGTTMDDVH -ATKAYTTTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00200 Nkx6-1_2825.1 Original Motif Original Motif Backward 1 9 0.0239738 Species: Mus musculus Consensus sequence (original motif): DVHAATTAATTAMYBBG Consensus sequence (reverse complement motif): CBVMRTAATTAATTHBH Alignment: DVHAATTAATTAMYBBG --------ATKAYTTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Reverse Complement Reverse Complement Forward 8 9 0.0240474 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD -------CAAAKTYAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Original Motif Original Motif Forward 2 9 0.0253434 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: DDDYCCTTTGATSTDDV -ATKAYTTTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00167 En1 Original Motif Reverse Complement Backward 2 9 0.0259902 Species: Mus musculus Consensus sequence (original motif): VVVAACTAATTARKDV Consensus sequence (reverse complement motif): VHRKTAATTAGTTVVV Alignment: VHRKTAATTAGTTVVV ------ATKAYTTTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00238 Nkx6-3 Original Motif Original Motif Backward 1 9 0.0262036 Species: Mus musculus Consensus sequence (original motif): DVHWATTAATTAVTBBB Consensus sequence (reverse complement motif): BVVAVTAATTAATWHBH Alignment: DVHWATTAATTAVTBBB --------ATKAYTTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 39 Motif name: Motif 39 Consensus sequence (original motif): GCTGTGAC Consensus sequence (reverse complement motif): GTCACAGC ************************************************************************ Best Matches for Motif ID 39 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00122 Tgif1 Reverse Complement Original Motif Forward 5 8 0 Species: Mus musculus Consensus sequence (original motif): DABWWTGACAGCTVVBD Consensus sequence (reverse complement motif): DBVVAGCTGTCAWWVTH Alignment: DABWWTGACAGCTVVBD ----GTCACAGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00258 Tgif2 Original Motif Original Motif Backward 4 8 0.00241817 Species: Mus musculus Consensus sequence (original motif): AABBAGCTGTCAAWVV Consensus sequence (reverse complement motif): VBWTTGACAGCTVBTT Alignment: AABBAGCTGTCAAWVV -----GCTGTGAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_secondary Reverse Complement Original Motif Backward 7 8 0.00553853 Species: Mus musculus Consensus sequence (original motif): DDDCACAGCAKGHVD Consensus sequence (reverse complement motif): DVHCYTGCTGTGHDH Alignment: DDDCACAGCAKGHVD -GTCACAGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_primary Original Motif Original Motif Backward 5 8 0.00578189 Species: Mus musculus Consensus sequence (original motif): BVHDAGGTGTGAAAHHH Consensus sequence (reverse complement motif): HHHTTTCACACCTDHBV Alignment: BVHDAGGTGTGAAAHHH -----GCTGTGAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_2205.1 Original Motif Original Motif Backward 5 8 0.00629536 Species: Mus musculus Consensus sequence (original motif): AVDHCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGHHVT Alignment: AVDHCGCTGTWAWDVVW -----GCTGTGAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_1765.2 Original Motif Original Motif Forward 6 8 0.00666342 Species: Mus musculus Consensus sequence (original motif): AVDVCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGBHBT Alignment: AVDVCGCTGTWAWDVVW -----GCTGTGAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00205 Pknox2 Original Motif Original Motif Backward 4 8 0.00747692 Species: Mus musculus Consensus sequence (original motif): HAVSRSCTGTCAATHB Consensus sequence (reverse complement motif): VHATTGACAGSKSVTH Alignment: HAVSRSCTGTCAATHB -----GCTGTGAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_secondary Reverse Complement Original Motif Forward 2 8 0.00877453 Species: Mus musculus Consensus sequence (original motif): BHDCVCAGCAGGHVD Consensus sequence (reverse complement motif): DVHCCTGCTGBGDDB Alignment: BHDCVCAGCAGGHVD -GTCACAGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00186 Meis1 Original Motif Original Motif Forward 6 8 0.00956623 Species: Mus musculus Consensus sequence (original motif): WAVBASCTGTCAAWVH Consensus sequence (reverse complement motif): DBWTTGACAGSTBVTW Alignment: WAVBASCTGTCAAWVH -----GCTGTGAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00226 Mrg1 Original Motif Original Motif Forward 6 8 0.0124611 Species: Mus musculus Consensus sequence (original motif): WAVBASCTGTCAAWHB Consensus sequence (reverse complement motif): BHWTTGACAGSTBBTW Alignment: WAVBASCTGTCAAWHB -----GCTGTGAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 40 Motif name: Motif 40 Consensus sequence (original motif): AAGTTCA Consensus sequence (reverse complement motif): TGAACTT ************************************************************************ Best Matches for Motif ID 40 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Original Motif Original Motif Backward 5 7 0 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCACVHD Consensus sequence (reverse complement motif): HHVGTGACCTTTDVDD Alignment: DHBHAAAGGTCACVHD -----AAGTTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_secondary Reverse Complement Reverse Complement Backward 6 7 0.00516503 Species: Mus musculus Consensus sequence (original motif): BBHHAAAGTCCAMTHH Consensus sequence (reverse complement motif): HHAYTGGACTTTHDBV Alignment: HHAYTGGACTTTHDBV ----TGAACTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Original Motif Original Motif Backward 6 7 0.00773155 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: DHDBCAAGGTCAHVBDH -----AAGTTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_primary Original Motif Original Motif Backward 5 7 0.00909243 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCAHVHB Consensus sequence (reverse complement motif): BHVDTGACCTTTDVDD Alignment: DHBHAAAGGTCAHVHB -----AAGTTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00019 Zbtb12_primary Reverse Complement Reverse Complement Forward 8 7 0.035752 Species: Mus musculus Consensus sequence (original motif): BDHRBGTTCTAGATCVB Consensus sequence (reverse complement motif): BBGATCTAGAACBKHDB Alignment: BBGATCTAGAACBKHDB -------TGAACTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00222 Tcf2 Original Motif Reverse Complement Backward 6 7 0.0379796 Species: Mus musculus Consensus sequence (original motif): DBBBGTTAACTAGBHBT Consensus sequence (reverse complement motif): ABDBCTAGTTAACVBBD Alignment: ABDBCTAGTTAACVBBD -----AAGTTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_primary Original Motif Reverse Complement Backward 7 7 0.0388625 Species: Mus musculus Consensus sequence (original motif): HHDATGTGCACATAMDH Consensus sequence (reverse complement motif): HHRTATGTGCACATHHD Alignment: HHRTATGTGCACATHHD ----AAGTTCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Reverse Complement Original Motif Forward 2 7 0.0421261 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGKWTH Consensus sequence (reverse complement motif): HAWYCCGGAAGTHBBD Alignment: DBBHACTTCCGGKWTH -TGAACTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Reverse Complement Original Motif Forward 9 7 0.0424658 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: DDDYCCTTTGATCTDDV --------TGAACTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_primary Original Motif Reverse Complement Forward 5 7 0.0427674 Species: Mus musculus Consensus sequence (original motif): DHVDTGTGCACAYAHDH Consensus sequence (reverse complement motif): HDHTMTGTGCACADVHD Alignment: HDHTMTGTGCACADVHD ----AAGTTCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 41 Motif name: Motif 41 Consensus sequence (original motif): TGGAGGAAA Consensus sequence (reverse complement motif): TTTCCTCCA ************************************************************************ Best Matches for Motif ID 41 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_primary Reverse Complement Reverse Complement Backward 5 9 0 Species: Mus musculus Consensus sequence (original motif): DCTTTCKAGGAATHHV Consensus sequence (reverse complement motif): VHHATTCCTYGAAAGD Alignment: VHHATTCCTYGAAAGD ---TTTCCTCCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Original Motif Original Motif Backward 4 9 0.0103598 Species: Mus musculus Consensus sequence (original motif): BWAHSMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRSDTWV Alignment: BWAHSMGGAAGTWD --TGGAGGAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_primary Original Motif Original Motif Backward 4 9 0.0126625 Species: Mus musculus Consensus sequence (original motif): DAHMMGGAARTDA Consensus sequence (reverse complement motif): TDAMTTCCYYDTD Alignment: DAHMMGGAARTDA -TGGAGGAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00085 Sfpi1_primary Original Motif Original Motif Forward 3 9 0.0131092 Species: Mus musculus Consensus sequence (original motif): BDAWGVGGAAGTDH Consensus sequence (reverse complement motif): HDACTTCCBCWTDV Alignment: BDAWGVGGAAGTDH --TGGAGGAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_primary Original Motif Original Motif Backward 4 9 0.0140163 Species: Mus musculus Consensus sequence (original motif): HHDWTSAATGAATDDB Consensus sequence (reverse complement motif): VDHATTCATTSAWDDH Alignment: HHDWTSAATGAATDDB ----TGGAGGAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_secondary Reverse Complement Original Motif Forward 4 9 0.0142598 Species: Mus musculus Consensus sequence (original motif): DKKWDACCCCCAHTDDV Consensus sequence (reverse complement motif): VDDAHTGGGGGTHWYYD Alignment: DKKWDACCCCCAHTDDV ---TTTCCTCCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00208 Obox5_2284.1 Reverse Complement Reverse Complement Forward 5 9 0.0161902 Species: Mus musculus Consensus sequence (original motif): HDVRGGGATTAAHTHHH Consensus sequence (reverse complement motif): DHHAHTTAATCCCKVDH Alignment: DHHAHTTAATCCCKVDH ----TTTCCTCCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00419 Spic Original Motif Original Motif Backward 4 9 0.0168157 Species: Mus musculus Consensus sequence (original motif): VAAAGMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRCTTTB Alignment: VAAAGMGGAAGTWD --TGGAGGAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00208 Obox5_3963.2 Reverse Complement Reverse Complement Forward 5 9 0.0175071 Species: Mus musculus Consensus sequence (original motif): VRVAGGGATTAAHTVWV Consensus sequence (reverse complement motif): VWBAHTTAATCCCTVKB Alignment: VWBAHTTAATCCCTVKB ----TTTCCTCCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_primary Reverse Complement Reverse Complement Forward 3 9 0.017867 Species: Mus musculus Consensus sequence (original motif): BTATGTACTAATWH Consensus sequence (reverse complement motif): HWATTAGTACATAV Alignment: HWATTAGTACATAV --TTTCCTCCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 42 Motif name: Motif 42 Consensus sequence (original motif): TGAATGAA Consensus sequence (reverse complement motif): TTCATTCA ************************************************************************ Best Matches for Motif ID 42 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_primary Original Motif Original Motif Backward 5 8 0 Species: Mus musculus Consensus sequence (original motif): HHDWTSAATGAATDDB Consensus sequence (reverse complement motif): VDHATTCATTSAWDDH Alignment: HHDWTSAATGAATDDB ----TGAATGAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00118 Pou4f3 Original Motif Original Motif Forward 6 8 0.0420896 Species: Mus musculus Consensus sequence (original motif): HVTTATTAATKADKHC Consensus sequence (reverse complement motif): GHYHTYATTAATAAVH Alignment: HVTTATTAATKADKHC -----TGAATGAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00237 Otp Reverse Complement Reverse Complement Backward 6 8 0.0426251 Species: Mus musculus Consensus sequence (original motif): VVHDRTTAATTAAYDDG Consensus sequence (reverse complement motif): CHDMTTAATTAAKDHVV Alignment: CHDMTTAATTAAKDHVV ----TTCATTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00130 Lhx3 Reverse Complement Reverse Complement Forward 6 8 0.0427891 Species: Mus musculus Consensus sequence (original motif): VDAATTAATTAAWWHHB Consensus sequence (reverse complement motif): VHHWWTTAATTAATTDV Alignment: VHHWWTTAATTAATTDV -----TTCATTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00212 Lhx5 Reverse Complement Reverse Complement Forward 6 8 0.044202 Species: Mus musculus Consensus sequence (original motif): VDHATTAATTAAAWHHB Consensus sequence (reverse complement motif): VDHWTTTAATTAATHHV Alignment: VDHWTTTAATTAATHHV -----TTCATTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00012 Bbx_primary Reverse Complement Reverse Complement Backward 5 8 0.0451439 Species: Mus musculus Consensus sequence (original motif): HADTTCAWTGAABWD Consensus sequence (reverse complement motif): HWBTTCAWTGAADTH Alignment: HWBTTCAWTGAADTH ---TTCATTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00142 Uncx4.1 Original Motif Reverse Complement Backward 6 8 0.0455949 Species: Mus musculus Consensus sequence (original motif): VDHDATTAATTAABVVG Consensus sequence (reverse complement motif): CVVBTTAATTAATDHDV Alignment: CVVBTTAATTAATDHDV ----TGAATGAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00172 Prop1 Reverse Complement Reverse Complement Backward 5 8 0.0460946 Species: Mus musculus Consensus sequence (original motif): VVVVTTAATTAABDDDC Consensus sequence (reverse complement motif): GDDDBTTAATTAABBVV Alignment: GDDDBTTAATTAABBVV -----TTCATTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00169 Lmx1b Original Motif Reverse Complement Forward 5 8 0.048175 Species: Mus musculus Consensus sequence (original motif): VDWWWTTAATTAATDHB Consensus sequence (reverse complement motif): BHDATTAATTAAWWWHB Alignment: BHDATTAATTAAWWWHB ----TGAATGAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00149 Phox2b Reverse Complement Reverse Complement Backward 6 8 0.0491281 Species: Mus musculus Consensus sequence (original motif): VVBAATTAATTAABDBG Consensus sequence (reverse complement motif): CBDVTTAATTAATTBVV Alignment: CBDVTTAATTAATTBVV ----TTCATTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 43 Motif name: Motif 43 Consensus sequence (original motif): AAKGAAAGGCA Consensus sequence (reverse complement motif): TGCCTTTCYTT ************************************************************************ Best Matches for Motif ID 43 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00074 Isgf3g_primary Reverse Complement Reverse Complement Forward 1 11 0.012358 Species: Mus musculus Consensus sequence (original motif): VDRAAWCGAAACTDA Consensus sequence (reverse complement motif): TDAGTTTCGWTTKDV Alignment: TDAGTTTCGWTTKDV TGCCTTTCYTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Original Motif Reverse Complement Backward 3 11 0.014351 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: BDDASATCAAAGGMDDD ----AAKGAAAGGCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Forward 5 11 0.015991 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD ----AAKGAAAGGCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Original Motif Original Motif Backward 3 11 0.0221257 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH ----AAKGAAAGGCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Reverse Complement Reverse Complement Backward 5 11 0.0233703 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HHBTMCTTTGTTMDDVH --TGCCTTTCYTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Reverse Complement Reverse Complement Forward 3 11 0.0234975 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HHBBMCTTTGTTHDDBH --TGCCTTTCYTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Original Motif Original Motif Forward 5 11 0.0239255 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: HHHASATCAAAGVRHHH ----AAKGAAAGGCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Original Motif Original Motif Backward 6 11 0.0239781 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: DHDBCAAGGTCAHVBDH -AAKGAAAGGCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00044 Mafk_secondary Reverse Complement Reverse Complement Backward 2 11 0.0264082 Species: Mus musculus Consensus sequence (original motif): VHAAAAADTGCAHBR Consensus sequence (reverse complement motif): MBHTGCADTTTTTHV Alignment: MBHTGCADTTTTTHV ---TGCCTTTCYTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00217 Hoxa10 Original Motif Original Motif Backward 1 11 0.0273937 Species: Mus musculus Consensus sequence (original motif): DHBGYAATAAAATDHW Consensus sequence (reverse complement motif): WDDATTTTATTMCBHD Alignment: DHBGYAATAAAATDHW -----AAKGAAAGGCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 44 Motif name: Motif 44 Consensus sequence (original motif): AATGKAAGAA Consensus sequence (reverse complement motif): TTCTTYCATT ************************************************************************ Best Matches for Motif ID 44 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_primary Original Motif Original Motif Forward 2 10 0.0293208 Species: Mus musculus Consensus sequence (original motif): BTATGTACTAATWH Consensus sequence (reverse complement motif): HWATTAGTACATAV Alignment: BTATGTACTAATWH -AATGKAAGAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_primary Reverse Complement Reverse Complement Backward 7 10 0.0314105 Species: Mus musculus Consensus sequence (original motif): HHDWTSAATGAATDDB Consensus sequence (reverse complement motif): VDHATTCATTSAWDDH Alignment: VDHATTCATTSAWDDH TTCTTYCATT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Original Motif Original Motif Backward 6 10 0.0385918 Species: Mus musculus Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: DDAATGTAAACAAAVVB --AATGKAAGAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Original Motif Forward 3 10 0.0392784 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: DWAATRTAAACAAWVVB --AATGKAAGAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00157 Hmx3 Reverse Complement Reverse Complement Forward 2 10 0.0433812 Species: Mus musculus Consensus sequence (original motif): VBVAGCAATTAAHVVAT Consensus sequence (reverse complement motif): ATBVHTTAATTGCTBBB Alignment: ATBVHTTAATTGCTBBB -TTCTTYCATT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Reverse Complement Original Motif Backward 5 10 0.0436699 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: DDDYCCTTTGATSTDDV ---TTCTTYCATT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Reverse Complement Original Motif Backward 5 10 0.0444106 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: DDDYCCTTTGATCTDDV ---TTCTTYCATT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00155 Hmx2 Reverse Complement Reverse Complement Backward 7 10 0.0454888 Species: Mus musculus Consensus sequence (original motif): VVAAGCAATTAAHVVDT Consensus sequence (reverse complement motif): ADBVHTTAATTGCTTVB Alignment: ADBVHTTAATTGCTTVB -TTCTTYCATT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Reverse Complement Reverse Complement Forward 2 10 0.0479046 Species: Mus musculus Consensus sequence (original motif): VRHCCAATAAAAWHHV Consensus sequence (reverse complement motif): VDHWTTTTATTGGDKB Alignment: VDHWTTTTATTGGDKB -TTCTTYCATT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Reverse Complement Backward 6 10 0.0481894 Species: Mus musculus Consensus sequence (original motif): HDHYYAATAAAAHHHH Consensus sequence (reverse complement motif): HDHHTTTTATTKKHDD Alignment: HDHHTTTTATTKKHDD -TTCTTYCATT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 45 Motif name: Motif 45 Consensus sequence (original motif): TAASTCTWTTTTAA Consensus sequence (reverse complement motif): TTAAAAWAGASTTA ************************************************************************ Best Matches for Motif ID 45 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00114 Homez Original Motif Original Motif Backward 2 14 0.0426024 Species: Mus musculus Consensus sequence (original motif): AHWWMATCGTTTTBADD Consensus sequence (reverse complement motif): HDTVAAAACGATRWWHT Alignment: AHWWMATCGTTTTBADD --TAASTCTWTTTTAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Reverse Complement Original Motif Backward 1 14 0.04935 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HHBBMCTTTGTTHDDBH ---TTAAAAWAGASTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Reverse Complement Forward 2 13 0.542468 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: DWAATRTAAACAAWVVB- -TAASTCTWTTTTAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00172 Prop1 Reverse Complement Original Motif Forward 5 13 0.545182 Species: Mus musculus Consensus sequence (original motif): VVVVTTAATTAABDDDC Consensus sequence (reverse complement motif): GDDDBTTAATTAABBVV Alignment: VVVVTTAATTAABDDDC- ----TTAAAAWAGASTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00212 Lhx5 Original Motif Reverse Complement Backward 5 13 0.547386 Species: Mus musculus Consensus sequence (original motif): VDHATTAATTAAAWHHB Consensus sequence (reverse complement motif): VDHWTTTAATTAATHHV Alignment: -VDHWTTTAATTAATHHV TAASTCTWTTTTAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00237 Otp Reverse Complement Reverse Complement Forward 5 13 0.548444 Species: Mus musculus Consensus sequence (original motif): VVHDRTTAATTAAYDDG Consensus sequence (reverse complement motif): CHDMTTAATTAAKDHVV Alignment: CHDMTTAATTAAKDHVV- ----TTAAAAWAGASTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00130 Lhx3 Reverse Complement Original Motif Backward 2 13 0.548839 Species: Mus musculus Consensus sequence (original motif): VDAATTAATTAAWWHHB Consensus sequence (reverse complement motif): VHHWWTTAATTAATTDV Alignment: -VHHWWTTAATTAATTDV ---TTAAAAWAGASTTA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00145 Barhl2 Original Motif Reverse Complement Backward 3 12 1.03054 Species: Mus musculus Consensus sequence (original motif): HAMAAHCAATTAABHH Consensus sequence (reverse complement motif): HHBTTAATTGDTTYTH Alignment: --HAMAAHCAATTAABHH --TAASTCTWTTTTAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00109 Obox6 Reverse Complement Original Motif Backward 4 12 1.0344 Species: Mus musculus Consensus sequence (original motif): AHAADCGGATTAWHB Consensus sequence (reverse complement motif): BHWTAATCCGDTTHT Alignment: --AHAADCGGATTAWHB TTAAAAWAGASTTA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00166 Barhl1 Reverse Complement Original Motif Backward 5 12 1.03746 Species: Mus musculus Consensus sequence (original motif): HAHAACCAATTARBDH Consensus sequence (reverse complement motif): DDVKTAATTGGTTDTH Alignment: --HAHAACCAATTARBDH TTAAAAWAGASTTA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 46 Motif name: Motif 46 Consensus sequence (original motif): ATAGGTTTAGYATA Consensus sequence (reverse complement motif): TATKCTAAACCTAT ************************************************************************ Best Matches for Motif ID 46 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00111 Dmbx1 Original Motif Original Motif Forward 4 14 0.0364989 Species: Mus musculus Consensus sequence (original motif): WDRWHMGGATTADKBHD Consensus sequence (reverse complement motif): DHBRDTAATCCRDWKHW Alignment: WDRWHMGGATTADKBHD ---ATAGGTTTAGYATA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Reverse Complement Original Motif Backward 3 14 0.0393329 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: DWAATRTAAACAAWVVB -TATKCTAAACCTAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_secondary Reverse Complement Reverse Complement Forward 1 14 0.0394759 Species: Mus musculus Consensus sequence (original motif): VBVDAGGTGTYGVBBV Consensus sequence (reverse complement motif): VVBVCKACACCTHVBV Alignment: VVBVCKACACCTHVBV TATKCTAAACCTAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00112 Gsc Reverse Complement Original Motif Backward 3 14 0.0411853 Species: Mus musculus Consensus sequence (original motif): HVWHRYTAATCCSYDHV Consensus sequence (reverse complement motif): BHDMSGGATTAMMDWBH Alignment: HVWHRYTAATCCSYDHV -TATKCTAAACCTAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00018 Irf4_primary Original Motif Reverse Complement Forward 1 14 0.041683 Species: Mus musculus Consensus sequence (original motif): VDDAYCGAAACYDVA Consensus sequence (reverse complement motif): TBDKGTTTCGMTDHV Alignment: VDDAYCGAAACYDVA ATAGGTTTAGYATA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Reverse Complement Original Motif Forward 2 14 0.0422263 Species: Mus musculus Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: DDAATGTAAACAAAVVB -TATKCTAAACCTAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00011 Irf6_primary Original Motif Reverse Complement Forward 3 14 0.042495 Species: Mus musculus Consensus sequence (original motif): HDDAHCGAAACYAVDDD Consensus sequence (reverse complement motif): DHDBTKGTTTCGHTHDD Alignment: DHDBTKGTTTCGHTHDD --ATAGGTTTAGYATA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00125 Pitx2 Original Motif Original Motif Forward 3 14 0.0436835 Species: Mus musculus Consensus sequence (original motif): DDDVRGGATTAATHDDH Consensus sequence (reverse complement motif): DDDDATTAATCCMBDHD Alignment: DDDVRGGATTAATHDDH --ATAGGTTTAGYATA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00229 Otx1 Original Motif Original Motif Forward 3 14 0.0443397 Species: Mus musculus Consensus sequence (original motif): DDDRGGGATTAATWHHB Consensus sequence (reverse complement motif): VHHWATTAATCCCMDHH Alignment: DDDRGGGATTAATWHHB --ATAGGTTTAGYATA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00153 Pitx1 Original Motif Original Motif Backward 1 14 0.044637 Species: Mus musculus Consensus sequence (original motif): HBVDRGGGATTAAMDHH Consensus sequence (reverse complement motif): HHDRTTAATCCCKHBVH Alignment: HBVDRGGGATTAAMDHH ---ATAGGTTTAGYATA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 47 Motif name: Motif 47 Consensus sequence (original motif): YGCCACCTDSTGGY Consensus sequence (reverse complement motif): KCCASDAGGTGGCK ************************************************************************ Best Matches for Motif ID 47 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Reverse Complement Original Motif Backward 7 14 0.0145956 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB ---KCCASDAGGTGGCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Original Motif Original Motif Forward 7 14 0.0188184 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ------YGCCACCTDSTGGY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Original Motif Reverse Complement Forward 8 14 0.0231104 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB -------YGCCACCTDSTGGY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_secondary Original Motif Original Motif Forward 4 14 0.025419 Species: Mus musculus Consensus sequence (original motif): DDDTWCCCCCCGGDRVH Consensus sequence (reverse complement motif): HVKDCCGGGGGGWADDD Alignment: DDDTWCCCCCCGGDRVH ---YGCCACCTDSTGGY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Original Motif Original Motif Backward 1 14 0.0278794 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: HDGHHBHRGACCACCCGSVDVG --------YGCCACCTDSTGGY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_primary Original Motif Original Motif Forward 1 14 0.0283962 Species: Mus musculus Consensus sequence (original motif): BMCCCCCGGGGGGGB Consensus sequence (reverse complement motif): VCCCCCCCGGGGGRB Alignment: BMCCCCCGGGGGGGB YGCCACCTDSTGGY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_primary Original Motif Original Motif Forward 1 14 0.0287857 Species: Mus musculus Consensus sequence (original motif): BHCCCCCGGGGGGG Consensus sequence (reverse complement motif): CCCCCCCGGGGGHB Alignment: BHCCCCCGGGGGGG YGCCACCTDSTGGY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Forward 8 14 0.0289988 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH -------YGCCACCTDSTGGY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Reverse Complement Reverse Complement Backward 7 14 0.0297857 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV ---KCCASDAGGTGGCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_primary Original Motif Original Motif Backward 2 14 0.0302183 Species: Mus musculus Consensus sequence (original motif): BMCCCCCGGGGGGGB Consensus sequence (reverse complement motif): VCCCCCCCGGGGGRB Alignment: BMCCCCCGGGGGGGB YGCCACCTDSTGGY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 48 Motif name: Motif 48 Consensus sequence (original motif): GCARRGGSAGS Consensus sequence (reverse complement motif): SCTSCCKMTGC ************************************************************************ Best Matches for Motif ID 48 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00153 Pitx1 Reverse Complement Reverse Complement Forward 7 11 0.0454693 Species: Mus musculus Consensus sequence (original motif): HBVDRGGGATTAAMDHH Consensus sequence (reverse complement motif): HHDRTTAATCCCKHBVH Alignment: HHDRTTAATCCCKHBVH ------SCTSCCKMTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00085 Sfpi1_primary Original Motif Original Motif Backward 4 11 0.0458219 Species: Mus musculus Consensus sequence (original motif): BDAWGVGGAAGTDH Consensus sequence (reverse complement motif): HDACTTCCBCWTDV Alignment: BDAWGVGGAAGTDH GCARRGGSAGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Reverse Complement Original Motif Forward 8 11 0.0463674 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH -------SCTSCCKMTGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Original Motif Forward 6 11 0.0465857 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV -----SCTSCCKMTGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Reverse Complement Original Motif Forward 2 11 0.0473355 Species: Mus musculus Consensus sequence (original motif): BBYVVCAGCTGCBVHHD Consensus sequence (reverse complement motif): HHDVVGCAGCTGVBKVB Alignment: BBYVVCAGCTGCBVHHD -SCTSCCKMTGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Reverse Complement Reverse Complement Forward 2 11 0.0487126 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV -SCTSCCKMTGC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_secondary Original Motif Reverse Complement Backward 1 11 0.0497623 Species: Mus musculus Consensus sequence (original motif): DTWGCCKSMGGCRHH Consensus sequence (reverse complement motif): HHKGCCYSRGGCWAD Alignment: DTWGCCKSMGGCRHH ----GCARRGGSAGS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Reverse Complement Backward 1 11 0.0507547 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH -----------SCTSCCKMTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_secondary Original Motif Reverse Complement Backward 2 11 0.0508648 Species: Mus musculus Consensus sequence (original motif): DDDYCCCATTGTVHABH Consensus sequence (reverse complement motif): HBTHVACAATGGGMDHD Alignment: HBTHVACAATGGGMDHD -----GCARRGGSAGS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_primary Original Motif Original Motif Backward 1 11 0.0512938 Species: Mus musculus Consensus sequence (original motif): WDHSCCYSRGGSRAD Consensus sequence (reverse complement motif): DTMSCCKSMGGSHDW Alignment: WDHSCCYSRGGSRAD ----GCARRGGSAGS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 49 Motif name: Motif 49 Consensus sequence (original motif): AAAAAAAAAAAAAT Consensus sequence (reverse complement motif): ATTTTTTTTTTTTT ************************************************************************ Best Matches for Motif ID 49 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primary Reverse Complement Reverse Complement Backward 2 14 0.0361736 Species: Mus musculus Consensus sequence (original motif): HDYAAAHAAMAADHD Consensus sequence (reverse complement motif): HHHTTRTTDTTTKDH Alignment: HHHTTRTTDTTTKDH ATTTTTTTTTTTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Original Motif Forward 2 14 0.0391439 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: DWAATRTAAACAAWVVB -AAAAAAAAAAAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Original Motif Forward 3 14 0.0416036 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: VBDDAAAAAAAAMVBHH --AAAAAAAAAAAAAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Reverse Complement Reverse Complement Backward 2 14 0.0420875 Species: Mus musculus Consensus sequence (original motif): HHWAWGTAAAYAAAVDB Consensus sequence (reverse complement motif): BDVTTTKTTTACWTWHH Alignment: BDVTTTKTTTACWTWHH --ATTTTTTTTTTTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Reverse Complement Forward 3 14 0.0424132 Species: Mus musculus Consensus sequence (original motif): HDHYYAATAAAAHHHH Consensus sequence (reverse complement motif): HDHHTTTTATTKKHDD Alignment: HDHHTTTTATTKKHDD --ATTTTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondary Reverse Complement Reverse Complement Backward 2 14 0.0424666 Species: Mus musculus Consensus sequence (original motif): ADDDYAWAACAAMAHH Consensus sequence (reverse complement motif): HDTYTTGTTWTKDDDT Alignment: HDTYTTGTTWTKDDDT -ATTTTTTTTTTTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Reverse Complement Reverse Complement Forward 3 14 0.0430608 Species: Mus musculus Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: BBVTTTGTTTACATTDD --ATTTTTTTTTTTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Reverse Complement Reverse Complement Backward 1 14 0.0435537 Species: Mus musculus Consensus sequence (original motif): VRHCCAATAAAAWHHV Consensus sequence (reverse complement motif): VDHWTTTTATTGGDKB Alignment: VDHWTTTTATTGGDKB --ATTTTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_secondary Reverse Complement Reverse Complement Forward 1 14 0.043907 Species: Mus musculus Consensus sequence (original motif): HHHAYAAYAACAHHH Consensus sequence (reverse complement motif): HDDTGTTKTTKTHHD Alignment: HDDTGTTKTTKTHHD ATTTTTTTTTTTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Original Motif Original Motif Backward 3 14 0.045165 Species: Mus musculus Consensus sequence (original motif): HDHADGTAAACAAAVVH Consensus sequence (reverse complement motif): DVVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH -AAAAAAAAAAAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 50 Motif name: Motif 50 Consensus sequence (original motif): GGAAM Consensus sequence (reverse complement motif): YTTCC ************************************************************************ Best Matches for Motif ID 50 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00424 Gm4881 Reverse Complement Original Motif Forward 6 5 0 Species: Mus musculus Consensus sequence (original motif): VBBHAYTTCCGGTDDD Consensus sequence (reverse complement motif): DHDACCGGAAMTHBVB Alignment: VBBHAYTTCCGGTDDD -----YTTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00416 Fli1 Reverse Complement Original Motif Forward 6 5 0.00163794 Species: Mus musculus Consensus sequence (original motif): VBBVAYTTCCGGTDDH Consensus sequence (reverse complement motif): DHDACCGGAAKTBBVV Alignment: VBBVAYTTCCGGTDDH -----YTTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00422 Etv3 Reverse Complement Original Motif Forward 6 5 0.00234412 Species: Mus musculus Consensus sequence (original motif): VBBHAYTTCCGGTHDH Consensus sequence (reverse complement motif): DHHACCGGAAKTHBBB Alignment: VBBHAYTTCCGGTHDH -----YTTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00411 Erg Reverse Complement Original Motif Forward 6 5 0.00589761 Species: Mus musculus Consensus sequence (original motif): VBBVAYTTCCGGTDDB Consensus sequence (reverse complement motif): BDDACCGGAAKTVBVB Alignment: VBBVAYTTCCGGTDDB -----YTTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00418 Etv6 Reverse Complement Original Motif Backward 7 5 0.00691345 Species: Mus musculus Consensus sequence (original motif): DVHBTACTTCCGGHTHB Consensus sequence (reverse complement motif): BHAHCCGGAAGTABDVD Alignment: DVHBTACTTCCGGHTHB ------YTTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00415 Elk4 Reverse Complement Original Motif Forward 6 5 0.00722176 Species: Mus musculus Consensus sequence (original motif): VBBHRYTTCCGGTDDH Consensus sequence (reverse complement motif): DHDACCGGAAKKHBVB Alignment: VBBHRYTTCCGGTDDH -----YTTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Reverse Complement Original Motif Backward 7 5 0.0153114 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGKWTH Consensus sequence (reverse complement motif): HAWYCCGGAAGTHBBD Alignment: DBBHACTTCCGGKWTH -----YTTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Reverse Complement Original Motif Backward 7 5 0.0153458 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGDWDB Consensus sequence (reverse complement motif): BDWDCCGGAAGTHBBD Alignment: DBBHACTTCCGGDWDB -----YTTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00417 Etv4 Reverse Complement Original Motif Backward 7 5 0.0219684 Species: Mus musculus Consensus sequence (original motif): VBBHAYWTCCGGTDDB Consensus sequence (reverse complement motif): BHHACCGGAWKTHBVV Alignment: VBBHAYWTCCGGTDDB -----YTTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00419 Spic Reverse Complement Reverse Complement Backward 7 5 0.0224017 Species: Mus musculus Consensus sequence (original motif): VAAAGMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRCTTTB Alignment: DWACTTCCRCTTTB ---YTTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 51 Motif name: HNF4A Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK ************************************************************************ Best Matches for Motif ID 51 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Original Motif Original Motif Backward 2 13 0.0357776 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: HHHASATCAAAGVRHHH ---RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Original Motif Original Motif Backward 2 13 0.0357792 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH ---RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Forward 4 13 0.0359011 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD ---RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Original Motif Reverse Complement Backward 2 13 0.0360786 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: BDDASATCAAAGGMDDD ---RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Original Motif Backward 4 13 0.0405764 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: HVDDVCAGATGKYHBBV -RGGBCAAAGKYCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Reverse Complement Reverse Complement Forward 2 13 0.0409915 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HHBBMCTTTGTTHDDBH -TGMYCTTTGBCCK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondary Reverse Complement Reverse Complement Forward 1 13 0.0413218 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: HDTMCTTTGTSTVDBB TGMYCTTTGBCCK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Reverse Complement Reverse Complement Forward 2 13 0.0421105 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HHBTMCTTTGTTMDDVH -TGMYCTTTGBCCK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00086 Irf3_secondary Original Motif Original Motif Forward 1 13 0.0442004 Species: Mus musculus Consensus sequence (original motif): DDAGAADGGDSCDV Consensus sequence (reverse complement motif): BHGSDCCDTTCTHH Alignment: DDAGAADGGDSCDV RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondary Original Motif Reverse Complement Backward 1 13 0.0446884 Species: Mus musculus Consensus sequence (original motif): DDGMCCTBGTCCHYHV Consensus sequence (reverse complement motif): VHMDGGACVAGGRCDH Alignment: DDGMCCTBGTCCHYHV ---RGGBCAAAGKYCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 52 Motif name: NR2F1 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA ************************************************************************ Best Matches for Motif ID 52 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Original Motif Original Motif Backward 3 14 0.0452364 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: DDDYCCTTTGATSTDDV -TGAMCTTTGMMCYT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Reverse Complement Reverse Complement Backward 2 14 0.0453449 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD --AKGYYCAAAGRTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Original Motif Reverse Complement Forward 8 14 0.0461358 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH -------TGAMCTTTGMMCYT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Reverse Complement Original Motif Backward 2 14 0.0461768 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH --AKGYYCAAAGRTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Reverse Complement Original Motif Backward 2 14 0.0473628 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: HHHASATCAAAGVRHHH --AKGYYCAAAGRTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondary Original Motif Original Motif Forward 1 14 0.0480188 Species: Mus musculus Consensus sequence (original motif): DDGMCCTBGTCCHYHV Consensus sequence (reverse complement motif): VHMDGGACVAGGRCDH Alignment: DDGMCCTBGTCCHYHV TGAMCTTTGMMCYT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Reverse Complement Forward 2 14 0.0495447 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HHBBMCTTTGTTHDDBH -TGAMCTTTGMMCYT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Reverse Complement Backward 3 14 0.0499033 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HHBTMCTTTGTTMDDVH -TGAMCTTTGMMCYT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00023 Sox30_primary Original Motif Original Motif Forward 3 14 0.0511534 Species: Mus musculus Consensus sequence (original motif): DHDBAACAATDRHHHH Consensus sequence (reverse complement motif): HHHHMHATTGTTBDHD Alignment: DHDBAACAATDRHHHH --TGAMCTTTGMMCYT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Reverse Complement Reverse Complement Backward 1 14 0.0516973 Species: Mus musculus Consensus sequence (original motif): HHRCCBBWGGDCDB Consensus sequence (reverse complement motif): BDGHCCWBVGGKDH Alignment: BDGHCCWBVGGKDH AKGYYCAAAGRTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 53 Motif name: ESR1 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV ************************************************************************ Best Matches for Motif ID 53 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Reverse Complement Backward 4 20 0.0658405 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH VDBHMAGGTCACCCTGACCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Original Motif Reverse Complement Forward 1 20 0.0689748 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB VDBHMAGGTCACCCTGACCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Reverse Complement Reverse Complement Backward 3 20 0.0701247 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH MGGTCAGGGTGACCTRDBHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Original Motif Backward 3 20 0.0711267 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH MGGTCAGGGTGACCTRDBHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Original Motif Reverse Complement Forward 2 20 0.0742427 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: CVHBSCGGGTGGTCMHVHHCDH -VDBHMAGGTCACCCTGACCY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Original Motif Original Motif Backward 2 20 0.0747053 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: ABBBBVVRGACCACCCACRDBBM --VDBHMAGGTCACCCTGACCY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Original Motif Original Motif Forward 4 20 0.0749165 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH ---VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Original Motif Original Motif Forward 2 20 0.0759307 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB -VDBHMAGGTCACCCTGACCY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Backward 3 20 0.0762689 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB -MGGTCAGGGTGACCTRDBHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Original Motif Forward 1 20 0.0780113 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB VDBHMAGGTCACCCTGACCY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 54 Motif name: Esrrb Consensus sequence (original motif): VBBYCAAGGTCA Consensus sequence (reverse complement motif): TGACCTTGMBBB ************************************************************************ Best Matches for Motif ID 54 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Reverse Complement Reverse Complement Forward 6 12 0 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: HHBVHTGACCTTGVDHD -----TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_primary Original Motif Original Motif Backward 5 12 0.0205471 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCAHVHB Consensus sequence (reverse complement motif): BHVDTGACCTTTDVDD Alignment: DHBHAAAGGTCAHVHB VBBYCAAGGTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Original Motif Original Motif Backward 5 12 0.0214372 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCACVHD Consensus sequence (reverse complement motif): HHVGTGACCTTTDVDD Alignment: DHBHAAAGGTCACVHD VBBYCAAGGTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_secondary Reverse Complement Reverse Complement Forward 5 12 0.0430759 Species: Mus musculus Consensus sequence (original motif): VBVBCSGGGTCAVBBH Consensus sequence (reverse complement motif): HVBVTGACCCSGBVBV Alignment: HVBVTGACCCSGBVBV ----TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_primary Original Motif Original Motif Forward 1 12 0.0451776 Species: Mus musculus Consensus sequence (original motif): BDBVMGGGGTCAABHDV Consensus sequence (reverse complement motif): BHHVTTGACCCCYVVDB Alignment: BDBVMGGGGTCAABHDV VBBYCAAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Original Motif Backward 6 12 0.0482496 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH VBBYCAAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Reverse Complement Original Motif Backward 1 12 0.0499025 Species: Mus musculus Consensus sequence (original motif): DBHBDTGACCCCDHVHB Consensus sequence (reverse complement motif): VHBHDGGGGTCAHBHBD Alignment: DBHBDTGACCCCDHVHB -----TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Reverse Complement Forward 8 12 0.0525354 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH -------TGACCTTGMBBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_secondary Reverse Complement Reverse Complement Backward 1 12 0.0580553 Species: Mus musculus Consensus sequence (original motif): BBHHAAAGTCCAMTHH Consensus sequence (reverse complement motif): HHAYTGGACTTTHDBV Alignment: HHAYTGGACTTTHDBV ----TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Reverse Complement Reverse Complement Forward 9 12 0.0609738 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB --------TGACCTTGMBBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 55 Motif name: ZEB1 Consensus sequence (original motif): CACCTD Consensus sequence (reverse complement motif): HAGGTG ************************************************************************ Best Matches for Motif ID 55 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_secondary Original Motif Reverse Complement Backward 4 6 0 Species: Mus musculus Consensus sequence (original motif): VBVDAGGTGTYGVBBV Consensus sequence (reverse complement motif): VVBVCKACACCTHVBV Alignment: VVBVCKACACCTHVBV -------CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00199 Six4 Reverse Complement Reverse Complement Forward 4 6 0.00433068 Species: Mus musculus Consensus sequence (original motif): ADDHATGACACCBHBBV Consensus sequence (reverse complement motif): BBVHVGGTGTCATHDDT Alignment: BBVHVGGTGTCATHDDT ---HAGGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_primary Original Motif Reverse Complement Forward 9 6 0.00524081 Species: Mus musculus Consensus sequence (original motif): BVHDAGGTGTGAAAHHH Consensus sequence (reverse complement motif): HHHTTTCACACCTDHBV Alignment: HHHTTTCACACCTDHBV --------CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Reverse Complement Forward 7 6 0.00911301 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB ------CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_secondary Original Motif Original Motif Backward 4 6 0.0233556 Species: Mus musculus Consensus sequence (original motif): BDDRVGACCACCHBDVB Consensus sequence (reverse complement motif): BBDVHGGTGGTCBKDDB Alignment: BDDRVGACCACCHBDVB --------CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Original Motif Backward 11 6 0.0233928 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH -------HAGGTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Original Motif Original Motif Backward 6 6 0.0254338 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: HTBVVVDGGACCACCCRGRDBG -----------CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Original Motif Original Motif Backward 6 6 0.0290143 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: HDGHHBHRGACCACCCGSVDVG -----------CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_primary Reverse Complement Original Motif Backward 5 6 0.0309673 Species: Mus musculus Consensus sequence (original motif): VVDBAACAGBTGBYHB Consensus sequence (reverse complement motif): BDKVCABCTGTTBDBV Alignment: VVDBAACAGBTGBYHB ------HAGGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Original Motif Original Motif Forward 6 6 0.031502 Species: Mus musculus Consensus sequence (original motif): HDADCCACTTRAAWTT Consensus sequence (reverse complement motif): AAWTTMAAGTGGHTDH Alignment: HDADCCACTTRAAWTT -----CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 56 Motif name: Mycn Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD ************************************************************************ Best Matches for Motif ID 56 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Forward 3 10 0 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD --HSCACGTGGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Backward 7 10 0.00783793 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM -------GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Backward 7 10 0.0132858 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM ------GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Original Motif Backward 5 10 0.0227933 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD ---GCCACGTGSD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Original Motif Forward 3 10 0.0257011 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD --HSCACGTGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Reverse Complement Original Motif Backward 4 10 0.0344833 Species: Mus musculus Consensus sequence (original motif): BVABCCACTTGAMHTT Consensus sequence (reverse complement motif): AAHYTCAAGTGGBTBV Alignment: BVABCCACTTGAMHTT ---GCCACGTGSD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Reverse Complement Original Motif Backward 5 10 0.035228 Species: Mus musculus Consensus sequence (original motif): HDVRCCACTTGARADBD Consensus sequence (reverse complement motif): DVDTKTCAAGTGGKBDH Alignment: HDVRCCACTTGARADBD ---GCCACGTGSD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_primary Reverse Complement Reverse Complement Backward 4 10 0.0358581 Species: Mus musculus Consensus sequence (original motif): BHBBKKACGTMMVDBVB Consensus sequence (reverse complement motif): BVVDVRYACGTRYVBHB Alignment: BVVDVRYACGTRYVBHB ----GCCACGTGSD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_secondary Original Motif Reverse Complement Backward 4 10 0.03725 Species: Mus musculus Consensus sequence (original motif): DGVBCRACGTYGTYHH Consensus sequence (reverse complement motif): HHMACKACGTMGBVCD Alignment: HHMACKACGTMGBVCD ---HSCACGTGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Original Motif Original Motif Forward 7 10 0.0383187 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: WHVBVVMACGCGCGTCDYHWDH ------HSCACGTGGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 57 Motif name: REST Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA ************************************************************************ Best Matches for Motif ID 57 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Original Motif Original Motif Forward 3 21 0.0699178 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB --TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Reverse Complement Forward 1 21 0.0734685 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH GGYGCTGTCCATGGTGCTGAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Original Motif Forward 2 21 0.0740652 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -TTCAGCACCATGGACAGCKCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Backward 1 21 0.0750152 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH --TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Original Motif Backward 3 21 0.0751449 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH GGYGCTGTCCATGGTGCTGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Reverse Complement Backward 2 21 0.075832 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH -TTCAGCACCATGGACAGCKCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Original Motif Original Motif Backward 1 21 0.0773446 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DTVBDDRGACCACCCAGDWDGBH --TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Original Motif Forward 3 21 0.0775367 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT --TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Reverse Complement Backward 1 21 0.077977 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR -GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Original Motif Backward 1 21 0.0785969 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV --GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 58 Motif name: Myc Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV ************************************************************************ Best Matches for Motif ID 58 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Forward 3 10 0 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD --VGCACGTGGH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Forward 8 10 0.00631885 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM -------DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Backward 7 10 0.00821668 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM ------DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Reverse Complement Backward 4 10 0.0140005 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB ----VGCACGTGGH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Original Motif Backward 3 10 0.0308912 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD --VGCACGTGGH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Reverse Complement Original Motif Forward 4 10 0.0311723 Species: Mus musculus Consensus sequence (original motif): BVABCCACTTGAMHTT Consensus sequence (reverse complement motif): AAHYTCAAGTGGBTBV Alignment: BVABCCACTTGAMHTT ---DCCACGTGCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Reverse Complement Original Motif Backward 4 10 0.031308 Species: Mus musculus Consensus sequence (original motif): HDADCCACTTRAAWTT Consensus sequence (reverse complement motif): AAWTTMAAGTGGHTDH Alignment: HDADCCACTTRAAWTT ---DCCACGTGCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Reverse Complement Original Motif Forward 4 10 0.0334845 Species: Mus musculus Consensus sequence (original motif): HDVRCCACTTGARADBD Consensus sequence (reverse complement motif): DVDTKTCAAGTGGKBDH Alignment: HDVRCCACTTGARADBD ---DCCACGTGCV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00147 Nkx2-6 Reverse Complement Original Motif Backward 4 10 0.0345548 Species: Mus musculus Consensus sequence (original motif): DDADCCACTTAAVHTT Consensus sequence (reverse complement motif): AAHVTTAAGTGGHTDD Alignment: DDADCCACTTAAVHTT ---DCCACGTGCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Original Motif Forward 6 10 0.0363818 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV -----VGCACGTGGH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 59 Motif name: ESR2 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV ************************************************************************ Best Matches for Motif ID 59 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Original Motif Forward 4 18 0.0443894 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB ---VHRGGTCABDBTGMCCTB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Reverse Complement Forward 4 18 0.049219 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH ---VHRGGTCABDBTGMCCTB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Reverse Complement Backward 3 18 0.0509182 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM --VHRGGTCABDBTGMCCTB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Original Motif Forward 2 18 0.0527075 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB -BAGGYCABHBTGACCKHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Reverse Complement Forward 2 18 0.0541044 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH -BAGGYCABHBTGACCKHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Reverse Complement Original Motif Forward 3 18 0.0541108 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: VCTBHBVCTTGGWTACVVVVVDB --BAGGYCABHBTGACCKHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Original Motif Backward 2 18 0.0543733 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV ---VHRGGTCABDBTGMCCTB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Original Motif Backward 5 18 0.0548087 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH -BAGGYCABHBTGACCKHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Original Motif Reverse Complement Forward 5 18 0.055453 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR ----VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Original Motif Original Motif Backward 4 18 0.0566426 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH -VHRGGTCABDBTGMCCTB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 60 Motif name: NR1H2RXRA Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT ************************************************************************ Best Matches for Motif ID 60 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Reverse Complement Backward 1 17 0.0538452 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH -----GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Original Motif Original Motif Backward 1 17 0.0545098 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: BDHDDADAGATAAGADHBDHVD -----AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Forward 2 16 0.521114 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD- -AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Reverse Complement Original Motif Backward 2 16 0.527825 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: -DDDYCCTTTGATSTDDV GTTGACCTTTGACCTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Original Motif Original Motif Forward 2 16 0.531154 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH- -AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Original Motif Original Motif Backward 2 16 0.531876 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: -HHHASATCAAAGVRHHH AAAGGTCAAAGGTCAAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Original Motif Forward 2 16 0.544403 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH- -AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Reverse Complement Reverse Complement Backward 2 16 0.544565 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: -HHBBMCTTTGTTHDDBH GTTGACCTTTGACCTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00019 Zbtb12_primary Reverse Complement Reverse Complement Backward 2 16 0.550511 Species: Mus musculus Consensus sequence (original motif): BDHRBGTTCTAGATCVB Consensus sequence (reverse complement motif): BBGATCTAGAACBKHDB Alignment: -BBGATCTAGAACBKHDB GTTGACCTTTGACCTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Original Motif Backward 2 16 0.552064 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: -HVDDVCAGATGKYHBBV AAAGGTCAAAGGTCAAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 61 Motif name: NR4A2 Consensus sequence (original motif): AAGGTCAC Consensus sequence (reverse complement motif): GTGACCTT ************************************************************************ Best Matches for Motif ID 61 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Reverse Complement Reverse Complement Forward 4 8 0 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCACVHD Consensus sequence (reverse complement motif): HHVGTGACCTTTDVDD Alignment: HHVGTGACCTTTDVDD ---GTGACCTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_primary Original Motif Original Motif Backward 4 8 0.0074527 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCAHVHB Consensus sequence (reverse complement motif): BHVDTGACCTTTDVDD Alignment: DHBHAAAGGTCAHVHB -----AAGGTCAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Original Motif Original Motif Forward 6 8 0.01542 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: DHDBCAAGGTCAHVBDH -----AAGGTCAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_secondary Original Motif Original Motif Forward 6 8 0.0395644 Species: Mus musculus Consensus sequence (original motif): VBVBCSGGGTCAVBBH Consensus sequence (reverse complement motif): HVBVTGACCCSGBVBV Alignment: VBVBCSGGGTCAVBBH -----AAGGTCAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondary Reverse Complement Original Motif Forward 1 8 0.0407874 Species: Mus musculus Consensus sequence (original motif): DDGMCCTBGTCCHYHV Consensus sequence (reverse complement motif): VHMDGGACVAGGRCDH Alignment: DDGMCCTBGTCCHYHV GTGACCTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Reverse Complement Original Motif Forward 5 8 0.0422933 Species: Mus musculus Consensus sequence (original motif): DBHBDTGACCCCDHVHB Consensus sequence (reverse complement motif): VHBHDGGGGTCAHBHBD Alignment: DBHBDTGACCCCDHVHB ----GTGACCTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Original Motif Backward 5 8 0.0447444 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH -----AAGGTCAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_secondary Original Motif Original Motif Forward 6 8 0.0481418 Species: Mus musculus Consensus sequence (original motif): BBHHAAAGTCCAMTHH Consensus sequence (reverse complement motif): HHAYTGGACTTTHDBV Alignment: BBHHAAAGTCCAMTHH -----AAGGTCAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00197 Hoxc9 Reverse Complement Reverse Complement Forward 8 8 0.0497679 Species: Mus musculus Consensus sequence (original motif): VDVGGTCATTAAHHDB Consensus sequence (reverse complement motif): VDHHTTAATGACCBHV Alignment: VDHHTTAATGACCBHV -------GTGACCTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_secondary Reverse Complement Original Motif Forward 5 8 0.0500062 Species: Mus musculus Consensus sequence (original motif): DBDDRTGCCCAWDHDV Consensus sequence (reverse complement motif): VHHDWTGGGCAMDHBH Alignment: DBDDRTGCCCAWDHDV ----GTGACCTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 62 Motif name: RORA_1 Consensus sequence (original motif): AWVDAGGTCA Consensus sequence (reverse complement motif): TGACCTDVWT ************************************************************************ Best Matches for Motif ID 62 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_primary Original Motif Original Motif Backward 5 10 0.0154749 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCAHVHB Consensus sequence (reverse complement motif): BHVDTGACCTTTDVDD Alignment: DHBHAAAGGTCAHVHB --AWVDAGGTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Reverse Complement Reverse Complement Forward 6 10 0.0176661 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: HHBVHTGACCTTGVDHD -----TGACCTDVWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Original Motif Original Motif Forward 3 10 0.0189599 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCACVHD Consensus sequence (reverse complement motif): HHVGTGACCTTTDVDD Alignment: DHBHAAAGGTCACVHD --AWVDAGGTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_secondary Original Motif Original Motif Backward 5 10 0.0331999 Species: Mus musculus Consensus sequence (original motif): VBVBCSGGGTCAVBBH Consensus sequence (reverse complement motif): HVBVTGACCCSGBVBV Alignment: VBVBCSGGGTCAVBBH --AWVDAGGTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_primary Original Motif Original Motif Forward 3 10 0.0341771 Species: Mus musculus Consensus sequence (original motif): BDBVMGGGGTCAABHDV Consensus sequence (reverse complement motif): BHHVTTGACCCCYVVDB Alignment: BDBVMGGGGTCAABHDV --AWVDAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Reverse Complement Original Motif Forward 6 10 0.0363566 Species: Mus musculus Consensus sequence (original motif): DBHBDTGACCCCDHVHB Consensus sequence (reverse complement motif): VHBHDGGGGTCAHBHBD Alignment: DBHBDTGACCCCDHVHB -----TGACCTDVWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Original Motif Forward 3 10 0.0391284 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH --AWVDAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_secondary Reverse Complement Original Motif Backward 2 10 0.0444205 Species: Mus musculus Consensus sequence (original motif): DBDDRTGCCCAWDHDV Consensus sequence (reverse complement motif): VHHDWTGGGCAMDHBH Alignment: DBDDRTGCCCAWDHDV -----TGACCTDVWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Reverse Complement Forward 1 10 0.0461434 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: RDHDBVDTCACGTGASBHVHDH AWVDAGGTCA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Original Motif Backward 3 10 0.0489571 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH -----------TGACCTDVWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 63 Motif name: MIZF Consensus sequence (original motif): BAACGTCCGC Consensus sequence (reverse complement motif): GCGGACGTTV ************************************************************************ Best Matches for Motif ID 63 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00419 Spic Original Motif Reverse Complement Forward 1 10 0 Species: Mus musculus Consensus sequence (original motif): VAAAGMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRCTTTB Alignment: DWACTTCCRCTTTB BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Original Motif Reverse Complement Forward 1 10 0.00379999 Species: Mus musculus Consensus sequence (original motif): BWAHSMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRSDTWV Alignment: BWAHSMGGAAGTWD BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Original Motif Original Motif Backward 5 10 0.0124101 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGKWTH Consensus sequence (reverse complement motif): HAWYCCGGAAGTHBBD Alignment: DBBHACTTCCGGKWTH --BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Original Motif Original Motif Forward 3 10 0.0128348 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGDWDB Consensus sequence (reverse complement motif): BDWDCCGGAAGTHBBD Alignment: DBBHACTTCCGGDWDB --BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00085 Sfpi1_primary Original Motif Reverse Complement Forward 1 10 0.0141516 Species: Mus musculus Consensus sequence (original motif): BDAWGVGGAAGTDH Consensus sequence (reverse complement motif): HDACTTCCBCWTDV Alignment: BDAWGVGGAAGTDH BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00423 Gm5454 Reverse Complement Reverse Complement Backward 3 10 0.0144665 Species: Mus musculus Consensus sequence (original motif): VDHHACTTCCGGTHVH Consensus sequence (reverse complement motif): DVHACCGGAAGTHDDV Alignment: DVHACCGGAAGTHDDV ----GCGGACGTTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00412 Etv5 Reverse Complement Reverse Complement Backward 3 10 0.0155825 Species: Mus musculus Consensus sequence (original motif): VDHAACWTCCGGTHHH Consensus sequence (reverse complement motif): DHHACCGGAWGTTDDV Alignment: DHHACCGGAWGTTDDV ----GCGGACGTTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00015 Ehf_primary Reverse Complement Original Motif Forward 6 10 0.0162018 Species: Mus musculus Consensus sequence (original motif): VBDABCCGGAAGTDD Consensus sequence (reverse complement motif): DDACTTCCGGBTHBB Alignment: VBDABCCGGAAGTDD -----GCGGACGTTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00418 Etv6 Original Motif Original Motif Forward 4 10 0.0171234 Species: Mus musculus Consensus sequence (original motif): DVHBTACTTCCGGHTHB Consensus sequence (reverse complement motif): BHAHCCGGAAGTABDVD Alignment: DVHBTACTTCCGGHTHB ---BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00421 Etv1 Reverse Complement Original Motif Backward 3 10 0.0184147 Species: Mus musculus Consensus sequence (original motif): MVHBACCGGAAGTVDVH Consensus sequence (reverse complement motif): HBDBACTTCCGGTBHVY Alignment: MVHBACCGGAAGTVDVH -----GCGGACGTTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 64 Motif name: PPARGRXRA Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB ************************************************************************ Best Matches for Motif ID 64 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Backward 2 15 0.0304954 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Original Motif Original Motif Forward 2 15 0.0319475 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: HHHASATCAAAGVRHHH -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Original Motif Original Motif Backward 2 15 0.032779 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondary Original Motif Reverse Complement Backward 2 15 0.0334185 Species: Mus musculus Consensus sequence (original motif): DDGMCCTBGTCCHYHV Consensus sequence (reverse complement motif): VHMDGGACVAGGRCDH Alignment: VHMDGGACVAGGRCDH BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Original Motif Backward 2 15 0.0352539 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HBDDDAACAAAGRVBHH -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Original Motif Backward 2 15 0.0358782 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondary Reverse Complement Reverse Complement Backward 2 15 0.0374729 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: HDTMCTTTGTSTVDBB TGRCCTKTGHCCKAB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Original Motif Reverse Complement Forward 2 15 0.0379757 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: BDDASATCAAAGGMDDD -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Reverse Complement Backward 2 15 0.0382733 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: DHHDGGGCGRGGKHBH BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_secondary Original Motif Reverse Complement Forward 1 15 0.0397168 Species: Mus musculus Consensus sequence (original motif): DDDYCCCATTGTVHABH Consensus sequence (reverse complement motif): HBTHVACAATGGGMDHD Alignment: DDDYCCCATTGTVHABH BTRGGDCARAGGKCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 65 Motif name: Tcfcp2l1 Consensus sequence (original motif): CCAGYYHVADCCRG Consensus sequence (reverse complement motif): CKGGDTBDMMCTGG ************************************************************************ Best Matches for Motif ID 65 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Original Motif Original Motif Backward 5 14 0.0527249 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH ----CCAGYYHVADCCRG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Original Motif Original Motif Backward 1 14 0.0551691 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH --------CCAGYYHVADCCRG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Original Motif Original Motif Backward 1 14 0.0560983 Species: Mus musculus Consensus sequence (original motif): HHRCCBBWGGDCDB Consensus sequence (reverse complement motif): BDGHCCWBVGGKDH Alignment: HHRCCBBWGGDCDB CCAGYYHVADCCRG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_secondary Original Motif Original Motif Backward 3 14 0.0566467 Species: Mus musculus Consensus sequence (original motif): CYDBYWTCCSMHBVVH Consensus sequence (reverse complement motif): DBVVDRSGGAWKVHKG Alignment: CYDBYWTCCSMHBVVH CCAGYYHVADCCRG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00075 Sox15_secondary Original Motif Reverse Complement Backward 1 14 0.0577636 Species: Mus musculus Consensus sequence (original motif): BBVAATGDMATTHVA Consensus sequence (reverse complement motif): TVDAATYDCATTVVV Alignment: BBVAATGDMATTHVA -CCAGYYHVADCCRG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00096 Sox13_secondary Reverse Complement Original Motif Forward 4 14 0.0587893 Species: Mus musculus Consensus sequence (original motif): DDDHTGGGTGGGHAHHD Consensus sequence (reverse complement motif): DHHTHCCCACCCAHDDH Alignment: DDDHTGGGTGGGHAHHD ---CKGGDTBDMMCTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Reverse Complement Forward 3 14 0.0590238 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC --CCAGYYHVADCCRG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Original Motif Forward 9 14 0.0596904 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH --------CCAGYYHVADCCRG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Original Motif Original Motif Backward 1 14 0.0597695 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB ---------CCAGYYHVADCCRG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Original Motif Backward 2 14 0.0598357 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH -------CKGGDTBDMMCTGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 66 Motif name: CTCF Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM ************************************************************************ Best Matches for Motif ID 66 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Original Motif Backward 1 19 0.0409369 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV ----BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Original Motif Backward 4 19 0.0409815 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB -YDRCCASYAGRKGGCRSYV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Reverse Complement Backward 1 19 0.0431951 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH ---BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Reverse Complement Original Motif Forward 4 19 0.0469794 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ---BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Original Motif Original Motif Backward 5 19 0.0482204 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH YDRCCASYAGRKGGCRSYV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Reverse Complement Backward 4 19 0.0491604 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV -YDRCCASYAGRKGGCRSYV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Reverse Complement Original Motif Forward 4 19 0.0511535 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB ---BMSMGCCYMCTKSTGGMHM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Original Motif Original Motif Forward 1 19 0.0520741 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH YDRCCASYAGRKGGCRSYV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Reverse Complement Backward 5 19 0.0532334 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: DVVTTVGTGGGHGGYAMHWHHHY YDRCCASYAGRKGGCRSYV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Forward 3 19 0.0535675 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM --BMSMGCCYMCTKSTGGMHM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 67 Motif name: TgTGgTGTCACAGTGCTCC Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA ************************************************************************ Best Matches for Motif ID 67 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Original Motif Reverse Complement Backward 2 19 0.043204 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB ---TGTGGTGTCACAGTGCTCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Original Motif Forward 6 18 0.553914 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB- -----TGTGGTGTCACAGTGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00192 Six1 Reverse Complement Reverse Complement Forward 3 17 1.04528 Species: Mus musculus Consensus sequence (original motif): DHDRGGGTATCAHDHBT Consensus sequence (reverse complement motif): AVHDHTGATACCCMDHH Alignment: AVHDHTGATACCCMDHH-- --GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_2205.1 Original Motif Reverse Complement Backward 1 17 1.0459 Species: Mus musculus Consensus sequence (original motif): AVDHCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGHHVT Alignment: --AVDHCGCTGTWAWDVVW TGTGGTGTCACAGTGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_1765.2 Original Motif Reverse Complement Backward 1 17 1.0462 Species: Mus musculus Consensus sequence (original motif): AVDVCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGBHBT Alignment: --WVVHWTWACAGCGBHBT TGTGGTGTCACAGTGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_primary Reverse Complement Original Motif Backward 3 17 1.04631 Species: Mus musculus Consensus sequence (original motif): BVHDAGGTGTGAAAHHH Consensus sequence (reverse complement motif): HHHTTTCACACCTDHBV Alignment: --HHHTTTCACACCTDHBV GGAGCACTGTGACACCACA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Reverse Complement Original Motif Forward 2 17 1.04807 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD-- -GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Reverse Complement Original Motif Forward 3 17 1.04831 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT-- --GGAGCACTGTGACACCACA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Original Motif Original Motif Backward 3 17 1.04867 Species: Mus musculus Consensus sequence (original motif): DBHBDTGACCCCDHVHB Consensus sequence (reverse complement motif): VHBHDGGGGTCAHBHBD Alignment: --DBHBDTGACCCCDHVHB TGTGGTGTCACAGTGCTCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00388 Six6_2267.4 Reverse Complement Reverse Complement Forward 3 17 1.0491 Species: Mus musculus Consensus sequence (original motif): DATRGGGTATCAHDWHT Consensus sequence (reverse complement motif): AHWDHTGATACCCKATD Alignment: AHWDHTGATACCCKATD-- --GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 68 Motif name: sscCCCGCGcs Consensus sequence (original motif): BSCCCCGCGBS Consensus sequence (reverse complement motif): SBCGCGGGGSB ************************************************************************ Best Matches for Motif ID 68 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Reverse Complement Reverse Complement Forward 5 11 0.00934222 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: BHBHDTGGCGGGGBDHD ----SBCGCGGGGSB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_primary Original Motif Original Motif Forward 2 11 0.0105793 Species: Mus musculus Consensus sequence (original motif): BMCCCCCGGGGGGGB Consensus sequence (reverse complement motif): VCCCCCCCGGGGGRB Alignment: BMCCCCCGGGGGGGB -BSCCCCGCGBS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_primary Reverse Complement Reverse Complement Forward 4 11 0.0112489 Species: Mus musculus Consensus sequence (original motif): BMCCCCCGGGGGGGB Consensus sequence (reverse complement motif): VCCCCCCCGGGGGRB Alignment: VCCCCCCCGGGGGRB ---SBCGCGGGGSB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Backward 7 11 0.014467 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ------SBCGCGGGGSB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Reverse Complement Backward 4 11 0.0150561 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW --------SBCGCGGGGSB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Original Motif Reverse Complement Backward 4 11 0.0169049 Species: Mus musculus Consensus sequence (original motif): DDGCGCGCGCRCHYRD Consensus sequence (reverse complement motif): DMMDGMGCGCGCGCHD Alignment: DMMDGMGCGCGCGCHD --BSCCCCGCGBS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_primary Original Motif Original Motif Forward 2 11 0.0186112 Species: Mus musculus Consensus sequence (original motif): BHCCCCCGGGGGGG Consensus sequence (reverse complement motif): CCCCCCCGGGGGHB Alignment: BHCCCCCGGGGGGG -BSCCCCGCGBS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Reverse Complement Backward 8 11 0.0192401 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV ----BSCCCCGCGBS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Reverse Complement Reverse Complement Backward 4 11 0.0204596 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: BHHDYGGGGGGGGBVD --SBCGCGGGGSB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Reverse Complement Original Motif Backward 5 11 0.0232114 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB -------SBCGCGGGGSB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 69 Motif name: atactttggc Consensus sequence (original motif): ATACTTTGGC Consensus sequence (reverse complement motif): GCCAAAGTAT ************************************************************************ Best Matches for Motif ID 69 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00156 Msx2 Original Motif Reverse Complement Backward 4 10 0.0221581 Species: Mus musculus Consensus sequence (original motif): VVDGACYAATTAGYDHT Consensus sequence (reverse complement motif): ADHKCTAATTKGTCDBV Alignment: ADHKCTAATTKGTCDBV ----ATACTTTGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondary Original Motif Reverse Complement Backward 6 10 0.027519 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: HDTMCTTTGTSTVDBB -ATACTTTGGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_secondary Reverse Complement Original Motif Backward 6 10 0.0285786 Species: Mus musculus Consensus sequence (original motif): BBHHAAAGTCCAMTHH Consensus sequence (reverse complement motif): HHAYTGGACTTTHDBV Alignment: BBHHAAAGTCCAMTHH -GCCAAAGTAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00418 Etv6 Reverse Complement Reverse Complement Forward 5 10 0.030488 Species: Mus musculus Consensus sequence (original motif): DVHBTACTTCCGGHTHB Consensus sequence (reverse complement motif): BHAHCCGGAAGTABDVD Alignment: BHAHCCGGAAGTABDVD ----GCCAAAGTAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Reverse Complement Reverse Complement Backward 3 10 0.0314685 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: BDDASATCAAAGGMDDD -----GCCAAAGTAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Reverse Complement Backward 6 10 0.0317293 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HHBTMCTTTGTTMDDVH --ATACTTTGGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Reverse Complement Backward 6 10 0.031914 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HHBBMCTTTGTTHDDBH --ATACTTTGGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_primary Reverse Complement Original Motif Forward 6 10 0.0323012 Species: Mus musculus Consensus sequence (original motif): DBBATGCCAACCHVHH Consensus sequence (reverse complement motif): DDBHGGTTGGCATVBD Alignment: DBBATGCCAACCHVHH -----GCCAAAGTAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00146 Pou6f1_3733.1 Original Motif Original Motif Backward 4 10 0.032571 Species: Mus musculus Consensus sequence (original motif): VHHVATAATGAGSTDDH Consensus sequence (reverse complement motif): DHDASCTCATTATVHHB Alignment: VHHVATAATGAGSTDDH ----ATACTTTGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Original Motif Backward 6 10 0.0330221 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: DDDYCCTTTGATCTDDV --ATACTTTGGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 70 Motif name: CagTGCTCCACTGTGgT Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG ************************************************************************ Best Matches for Motif ID 70 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Reverse Complement Reverse Complement Backward 4 17 0.0419306 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH --ABCACAGTGGAGCACTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Original Motif Backward 1 17 0.0501904 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW -----ABCACAGTGGAGCACTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Original Motif Reverse Complement Forward 3 17 0.0504778 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB --CAGTGCTCCACTGTGBT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_secondary Original Motif Original Motif Forward 1 17 0.0513094 Species: Mus musculus Consensus sequence (original motif): DDDTWCCCCCCGGDRVH Consensus sequence (reverse complement motif): HVKDCCGGGGGGWADDD Alignment: DDDTWCCCCCCGGDRVH CAGTGCTCCACTGTGBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Original Motif Reverse Complement Forward 2 17 0.0516506 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH -CAGTGCTCCACTGTGBT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_primary Reverse Complement Reverse Complement Forward 3 17 0.0523515 Species: Mus musculus Consensus sequence (original motif): HADTBVADGATGCATCMTGMVHB Consensus sequence (reverse complement motif): VHVRCAYGATGCATCDTVVADTH Alignment: VHVRCAYGATGCATCDTVVADTH --ABCACAGTGGAGCACTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Reverse Complement Reverse Complement Forward 3 17 0.053668 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: CVHBSCGGGTGGTCMHVHHCDH --ABCACAGTGGAGCACTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Original Motif Forward 6 17 0.0539016 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT -----ABCACAGTGGAGCACTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_primary Reverse Complement Reverse Complement Backward 1 17 0.0558205 Species: Mus musculus Consensus sequence (original motif): HHDATGTGCACATAMDH Consensus sequence (reverse complement motif): HHRTATGTGCACATHHD Alignment: HHRTATGTGCACATHHD ABCACAGTGGAGCACTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Original Motif Reverse Complement Backward 2 17 0.0558674 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: BDVBCDACGCKCGCGTBHRKHD ----CAGTGCTCCACTGTGBT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 71 Motif name: AmTGTGACACCACAGT Consensus sequence (original motif): AMTGTGACACCACAGT Consensus sequence (reverse complement motif): ACTGTGGTGTCACART ************************************************************************ Best Matches for Motif ID 71 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00020 Atf1_primary Original Motif Original Motif Forward 1 16 0.0273934 Species: Mus musculus Consensus sequence (original motif): DBDRTGACGTCAYHRD Consensus sequence (reverse complement motif): DMDMTGACGTCAKHBD Alignment: DBDRTGACGTCAYHRD AMTGTGACACCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00159 Six2 Original Motif Reverse Complement Forward 2 16 0.0303245 Species: Mus musculus Consensus sequence (original motif): DAKRGGGTATCACDWHT Consensus sequence (reverse complement motif): AHWDGTGATACCCMRTD Alignment: AHWDGTGATACCCMRTD -AMTGTGACACCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00103 Jundm2_primary Original Motif Original Motif Backward 1 16 0.0344928 Species: Mus musculus Consensus sequence (original motif): BBGATGACGTCAYCVH Consensus sequence (reverse complement motif): HVGMTGACGTCATCBB Alignment: BBGATGACGTCAYCVH AMTGTGACACCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00122 Tgif1 Reverse Complement Reverse Complement Forward 1 16 0.0348371 Species: Mus musculus Consensus sequence (original motif): DABWWTGACAGCTVVBD Consensus sequence (reverse complement motif): DBVVAGCTGTCAWWVTH Alignment: DBVVAGCTGTCAWWVTH ACTGTGGTGTCACART- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00195 Six3 Reverse Complement Original Motif Backward 2 16 0.0349083 Species: Mus musculus Consensus sequence (original motif): DATRGGGTATCAHHWHT Consensus sequence (reverse complement motif): AHWHDTGATACCCKATH Alignment: DATRGGGTATCAHHWHT ACTGTGGTGTCACART- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00388 Six6_2267.4 Reverse Complement Original Motif Backward 2 16 0.0354092 Species: Mus musculus Consensus sequence (original motif): DATRGGGTATCAHDWHT Consensus sequence (reverse complement motif): AHWDHTGATACCCKATD Alignment: DATRGGGTATCAHDWHT ACTGTGGTGTCACART- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00192 Six1 Reverse Complement Original Motif Forward 1 16 0.0354313 Species: Mus musculus Consensus sequence (original motif): DHDRGGGTATCAHDHBT Consensus sequence (reverse complement motif): AVHDHTGATACCCMDHH Alignment: AVHDHTGATACCCMDHH ACTGTGGTGTCACART- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00199 Six4 Original Motif Original Motif Forward 2 16 0.0355151 Species: Mus musculus Consensus sequence (original motif): ADDHATGACACCBHBBV Consensus sequence (reverse complement motif): BBVHVGGTGTCATHDDT Alignment: ADDHATGACACCBHBBV -AMTGTGACACCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Original Motif Original Motif Forward 2 16 0.0362492 Species: Mus musculus Consensus sequence (original motif): DBHBDTGACCCCDHVHB Consensus sequence (reverse complement motif): VHBHDGGGGTCAHBHBD Alignment: DBHBDTGACCCCDHVHB -AMTGTGACACCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00388 Six6_2267.5 Original Motif Reverse Complement Backward 1 16 0.0374881 Species: Mus musculus Consensus sequence (original motif): DDDRGGGTATCAWHWHT Consensus sequence (reverse complement motif): AHWHWTGATACCCKDDD Alignment: DDDRGGGTATCAWHWHT -AMTGTGACACCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 72 Motif name: CACTGTGrYrtCACAGTGswsCAcT Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG ************************************************************************ Best Matches for Motif ID 72 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Backward 2 21 0.0558366 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: ----HHBDHDDAACAATDRHHHHHBW CACTGTGRTRTCACAGTGSWSCACT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Reverse Complement Forward 3 20 0.55477 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH----- --AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Reverse Complement Original Motif Forward 7 19 1.05722 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DBCDWHCTGGGTGGTCMDHBBAH------ ------AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Reverse Complement Forward 7 19 1.05946 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB------ ------AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Original Motif Reverse Complement Forward 8 18 1.5496 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: HTBVVVDGGACCACCCRGRDBG------- -------CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_primary Original Motif Reverse Complement Forward 8 18 1.55149 Species: Mus musculus Consensus sequence (original motif): HADTBVADGATGCATCMTGMVHB Consensus sequence (reverse complement motif): VHVRCAYGATGCATCDTVVADTH Alignment: HADTBVADGATGCATCMTGMVHB------- -------CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Reverse Complement Original Motif Backward 8 18 1.55607 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: -------CVHBSCGGGTGGTCMHVHHCDH AGTGSWSCACTGTGAMAMCACAGTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00228 Bapx1 Reverse Complement Original Motif Backward 8 17 2.04247 Species: Mus musculus Consensus sequence (original motif): VHHAACCACTTAAVVAH Consensus sequence (reverse complement motif): DTBVTTAAGTGGTTHHV Alignment: --------DTBVTTAAGTGGTTHHV AGTGSWSCACTGTGAMAMCACAGTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Original Motif Reverse Complement Forward 7 17 2.04316 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: DDBBBCACTGCABTBBB-------- ------CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_1765.2 Reverse Complement Original Motif Forward 4 17 2.04346 Species: Mus musculus Consensus sequence (original motif): AVDVCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGBHBT Alignment: WVVHWTWACAGCGBHBT-------- ---AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 73 Motif name: TGGAGCACTGTGACAcCACAGTGg Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA ************************************************************************ Best Matches for Motif ID 73 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Reverse Complement Reverse Complement Forward 4 21 0.0391954 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB--- ---CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Reverse Complement Reverse Complement Forward 3 21 0.0400271 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT--- --CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Reverse Complement Reverse Complement Backward 5 20 0.535486 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: ----DBCDWHCTGGGTGGTCMDHBBAH CCACTGTGVTGTCACAGTGCTCCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Reverse Complement Reverse Complement Backward 5 20 0.536069 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: ----BTBVTCVTGGGTGGTCMVVDVBB CCACTGTGVTGTCACAGTGCTCCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Original Motif Reverse Complement Backward 4 20 0.539704 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: ----HGDHVHKGACCACCCGGBGBGDB TGGAGCACTGTGACAVCACAGTGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Original Motif Reverse Complement Backward 7 18 1.53819 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: ------DVTTVVCVYGGHGGYCHHDMYB TGGAGCACTGTGACAVCACAGTGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00122 Tgif1 Original Motif Original Motif Backward 3 17 2.02534 Species: Mus musculus Consensus sequence (original motif): DABWWTGACAGCTVVBD Consensus sequence (reverse complement motif): DBVVAGCTGTCAWWVTH Alignment: -------DABWWTGACAGCTVVBD TGGAGCACTGTGACAVCACAGTGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00159 Six2 Reverse Complement Original Motif Forward 3 17 2.02571 Species: Mus musculus Consensus sequence (original motif): DAKRGGGTATCACDWHT Consensus sequence (reverse complement motif): AHWDGTGATACCCMRTD Alignment: AHWDGTGATACCCMRTD------- --CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00192 Six1 Reverse Complement Original Motif Forward 3 17 2.02892 Species: Mus musculus Consensus sequence (original motif): DHDRGGGTATCAHDHBT Consensus sequence (reverse complement motif): AVHDHTGATACCCMDHH Alignment: AVHDHTGATACCCMDHH------- --CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00076 Rfxdc2_secondary Reverse Complement Reverse Complement Forward 4 17 2.0292 Species: Mus musculus Consensus sequence (original motif): BBVCDTRGAKACSVDDH Consensus sequence (reverse complement motif): HDDVSGTRTCMADGBVB Alignment: HDDVSGTRTCMADGBVB------- ---CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 74 Motif name: ssCCCCGCSssk Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS ************************************************************************ Best Matches for Motif ID 74 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Original Motif Backward 4 12 0.0114847 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB --SBCCCCGCCSBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Forward 3 12 0.0165262 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD --SBCCCCGCCSBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Original Motif Backward 3 12 0.0276137 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB --SBCCCCGCCSBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Original Motif Reverse Complement Forward 2 12 0.0328578 Species: Mus musculus Consensus sequence (original motif): VHDADGGCGCGCSHW Consensus sequence (reverse complement motif): WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB -SBCCCCGCCSBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Original Motif Original Motif Forward 2 12 0.0336734 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH -SBCCCCGCCSBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_primary Original Motif Reverse Complement Backward 3 12 0.0345737 Species: Mus musculus Consensus sequence (original motif): VHDARGGCGCGCVHH Consensus sequence (reverse complement motif): HHVGCGCGCCKTDHB Alignment: HHVGCGCGCCKTDHB -SBCCCCGCCSBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondary Reverse Complement Reverse Complement Backward 3 12 0.0347468 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: HVDVGGGHGGGGDBHB --BBSGGCGGGGBS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Reverse Complement Reverse Complement Forward 3 12 0.0358124 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: BHHHWGGGGCGGBBVH --BBSGGCGGGGBS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Original Motif Forward 9 12 0.0365354 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV --------SBCCCCGCCSBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Reverse Complement Backward 6 12 0.0389727 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW -----BBSGGCGGGGBS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 75 Motif name: wwCCAmAGTCmt Consensus sequence (original motif): DDCCAMAGTCHB Consensus sequence (reverse complement motif): VDGACTRTGGDD ************************************************************************ Best Matches for Motif ID 75 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Original Motif Original Motif Backward 5 12 0.00927341 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: DHDBCAAGGTCAHVBDH -DDCCAMAGTCHB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_secondary Original Motif Original Motif Forward 1 12 0.0157554 Species: Mus musculus Consensus sequence (original motif): BBHHAAAGTCCAMTHH Consensus sequence (reverse complement motif): HHAYTGGACTTTHDBV Alignment: BBHHAAAGTCCAMTHH DDCCAMAGTCHB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00023 Sox30_primary Reverse Complement Original Motif Forward 3 12 0.0218941 Species: Mus musculus Consensus sequence (original motif): DHDBAACAATDRHHHH Consensus sequence (reverse complement motif): HHHHMHATTGTTBDHD Alignment: DHDBAACAATDRHHHH --VDGACTRTGGDD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00028 Tcfap2e_primary Original Motif Reverse Complement Backward 2 12 0.023236 Species: Mus musculus Consensus sequence (original motif): HHHGCCTSAGGCDAD Consensus sequence (reverse complement motif): DTHGCCTSAGGCHHH Alignment: DTHGCCTSAGGCHHH --DDCCAMAGTCHB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Original Motif Backward 6 12 0.0235871 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW -----VDGACTRTGGDD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00095 Zfp691_secondary Original Motif Reverse Complement Backward 4 12 0.0240897 Species: Mus musculus Consensus sequence (original motif): DABBWGACTCCTHDVHV Consensus sequence (reverse complement motif): VHBDDAGGAGTCWBBTD Alignment: VHBDDAGGAGTCWBBTD --DDCCAMAGTCHB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00004 Sox14_secondary Reverse Complement Original Motif Backward 2 12 0.025783 Species: Mus musculus Consensus sequence (original motif): BKBASACAATRGHBB Consensus sequence (reverse complement motif): BBDCMATTGTSTBRB Alignment: BKBASACAATRGHBB --VDGACTRTGGDD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00081 Mybl1_primary Reverse Complement Original Motif Backward 3 12 0.026472 Species: Mus musculus Consensus sequence (original motif): HDDDHAACCGTTAHHHD Consensus sequence (reverse complement motif): DHHHTAACGGTTHDHDH Alignment: HDDDHAACCGTTAHHHD ---VDGACTRTGGDD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00052 Osr2_primary Original Motif Reverse Complement Backward 2 12 0.027027 Species: Mus musculus Consensus sequence (original motif): HHVHACRGTAGCHHHD Consensus sequence (reverse complement motif): HHHHGCTACKGTHVHH Alignment: HHHHGCTACKGTHVHH ---DDCCAMAGTCHB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Reverse Complement Reverse Complement Forward 3 12 0.0270662 Species: Mus musculus Consensus sequence (original motif): HDHDDCCAGACABBHVH Consensus sequence (reverse complement motif): HVHBVTGTCTGGDDHDD Alignment: HVHBVTGTCTGGDDHDD --VDGACTRTGGDD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 76 Motif name: CAcCACAGTGGAGCAct Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG ************************************************************************ Best Matches for Motif ID 76 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Original Motif Reverse Complement Forward 2 17 0.0381337 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH -CAHCACAGTGGAGCACT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Reverse Complement Reverse Complement Backward 1 17 0.0393208 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: BBBAVTGCAGTGBBVDD AGTGCTCCACTGTGDTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Backward 2 17 0.0441166 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW ----CAHCACAGTGGAGCACT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Reverse Complement Forward 4 17 0.0477617 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB ---AGTGCTCCACTGTGDTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Original Motif Original Motif Backward 1 17 0.0479423 Species: Mus musculus Consensus sequence (original motif): HDVRCCACTTGARADBD Consensus sequence (reverse complement motif): DVDTKTCAAGTGGKBDH Alignment: HDVRCCACTTGARADBD CAHCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_primary Original Motif Reverse Complement Backward 6 17 0.0484681 Species: Mus musculus Consensus sequence (original motif): HADTBVADGATGCATCMTGMVHB Consensus sequence (reverse complement motif): VHVRCAYGATGCATCDTVVADTH Alignment: VHVRCAYGATGCATCDTVVADTH -CAHCACAGTGGAGCACT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Reverse Complement Reverse Complement Forward 1 17 0.0487437 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV AGTGCTCCACTGTGDTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Reverse Complement Forward 1 17 0.048891 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB AGTGCTCCACTGTGDTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Original Motif Reverse Complement Backward 5 17 0.0491352 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: CVHBSCGGGTGGTCMHVHHCDH -CAHCACAGTGGAGCACT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Original Motif Original Motif Forward 4 17 0.0515016 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB ---CAHCACAGTGGAGCACT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 77 Motif name: AgTGCTCCACTGTGgTGTCACAgT Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT ************************************************************************ Best Matches for Motif ID 77 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Reverse Complement Original Motif Forward 1 23 0.0509731 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB- ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Original Motif Reverse Complement Forward 4 21 1.0488 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DTVBDDRGACCACCCAGDWDGBH--- ---AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Reverse Complement Forward 3 21 1.05087 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB--- --ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Reverse Complement Reverse Complement Forward 7 18 2.54748 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH------ ------ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Original Motif Original Motif Backward 1 17 3.0367 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: -------HAAWDTGCTGACDWARH AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_secondary Original Motif Original Motif Backward 7 17 3.04028 Species: Mus musculus Consensus sequence (original motif): DDDYCCCATTGTVHABH Consensus sequence (reverse complement motif): HBTHVACAATGGGMDHD Alignment: -------DDDYCCCATTGTVHABH AGTGCTCCACTGTGGTGTCACAGT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Original Motif Reverse Complement Backward 8 17 3.04347 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: -------DDBBBCACTGCABTBBB AGTGCTCCACTGTGGTGTCACAGT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Reverse Complement Reverse Complement Forward 4 17 3.04662 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD------- ---ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_secondary Original Motif Reverse Complement Forward 2 17 3.04663 Species: Mus musculus Consensus sequence (original motif): DDBVHATAGGGGRBRMB Consensus sequence (reverse complement motif): BYMBKCCCCTATDVBHD Alignment: DDBVHATAGGGGRBRMB------- -AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00148 Hdx Reverse Complement Original Motif Backward 8 17 3.04907 Species: Mus musculus Consensus sequence (original motif): DDKDHGAAATCAHHBHV Consensus sequence (reverse complement motif): BDBDHTGATTTCDHYDD Alignment: -------BDBDHTGATTTCDHYDD ACTGTGACACCACAGTGGAGCACT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 78 Motif name: ssGCkTGCssk Consensus sequence (original motif): SSGCKTGCSSK Consensus sequence (reverse complement motif): YSSGCAYGCSS ************************************************************************ Best Matches for Motif ID 78 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Original Motif Original Motif Backward 1 11 0.00463328 Species: Mus musculus Consensus sequence (original motif): VHDADGGCGCGCSHW Consensus sequence (reverse complement motif): WHSGCGCGCCHTDHB Alignment: VHDADGGCGCGCSHW ----SSGCKTGCSSK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00094 Zfp128_primary Original Motif Original Motif Backward 3 11 0.00482124 Species: Mus musculus Consensus sequence (original motif): BHHDKGGCGTACCCBHD Consensus sequence (reverse complement motif): DHVGGGTACGCCRDHDV Alignment: BHHDKGGCGTACCCBHD ----SSGCKTGCSSK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_secondary Reverse Complement Reverse Complement Backward 1 11 0.00562779 Species: Mus musculus Consensus sequence (original motif): DBDDRTGCCCAWDHDV Consensus sequence (reverse complement motif): VHHDWTGGGCAMDHBH Alignment: VHHDWTGGGCAMDHBH -----YSSGCAYGCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Original Motif Original Motif Forward 3 11 0.00595984 Species: Mus musculus Consensus sequence (original motif): DDGCGCGCGCRCHYRD Consensus sequence (reverse complement motif): DMMDGMGCGCGCGCHD Alignment: DDGCGCGCGCRCHYRD --SSGCKTGCSSK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_primary Original Motif Reverse Complement Forward 2 11 0.00821725 Species: Mus musculus Consensus sequence (original motif): VHDARGGCGCGCVHH Consensus sequence (reverse complement motif): HHVGCGCGCCKTDHB Alignment: HHVGCGCGCCKTDHB -SSGCKTGCSSK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Reverse Complement Backward 1 11 0.0109259 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: HDGTCGCGTGDCVB ---SSGCKTGCSSK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Reverse Complement Original Motif Forward 4 11 0.0150199 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV ---YSSGCAYGCSS-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Reverse Complement Reverse Complement Forward 2 11 0.0160778 Species: Mus musculus Consensus sequence (original motif): BDWAGGCGTGBCHHD Consensus sequence (reverse complement motif): HHDGBCACGCCTWDB Alignment: HHDGBCACGCCTWDB -YSSGCAYGCSS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Original Motif Reverse Complement Backward 3 11 0.0171602 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW ---------SSGCKTGCSSK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Reverse Complement Backward 6 11 0.0172713 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR ------YSSGCAYGCSS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 79 Motif name: cCGCGGrCACG Consensus sequence (original motif): CCGCGGRCACG Consensus sequence (reverse complement motif): CGTGKCCGCGG ************************************************************************ Best Matches for Motif ID 79 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Original Motif Original Motif Backward 2 11 0.0220206 Species: Mus musculus Consensus sequence (original motif): DDGCGCGCGCRCHYRD Consensus sequence (reverse complement motif): DMMDGMGCGCGCGCHD Alignment: DDGCGCGCGCRCHYRD ----CCGCGGRCACG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Reverse Complement Reverse Complement Backward 9 11 0.024575 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV ---CGTGKCCGCGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Original Motif Original Motif Forward 3 11 0.0279366 Species: Mus musculus Consensus sequence (original motif): DVMVGCACACACKCVH Consensus sequence (reverse complement motif): HBGYGTGTGTGCVRVD Alignment: DVMVGCACACACKCVH --CCGCGGRCACG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Reverse Complement Forward 2 11 0.0285381 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: VHTGCGGGGGCGGH -CCGCGGRCACG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Reverse Complement Forward 9 11 0.0335378 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM --------CCGCGGRCACG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Reverse Complement Backward 6 11 0.0340428 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB -------CCGCGGRCACG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_secondary Original Motif Original Motif Forward 2 11 0.0345855 Species: Mus musculus Consensus sequence (original motif): GYCGCGCARBGCVB Consensus sequence (reverse complement motif): VVGCVMTGCGCGKC Alignment: GYCGCGCARBGCVB -CCGCGGRCACG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Original Motif Original Motif Backward 3 11 0.0350434 Species: Mus musculus Consensus sequence (original motif): DBDHCGTGTGCAAMDH Consensus sequence (reverse complement motif): HDYTTGCACACGDHBH Alignment: DBDHCGTGTGCAAMDH ---CCGCGGRCACG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00076 Rfxdc2_secondary Reverse Complement Reverse Complement Backward 3 11 0.0359928 Species: Mus musculus Consensus sequence (original motif): BBVCDTRGAKACSVDDH Consensus sequence (reverse complement motif): HDDVSGTRTCMADGBVB Alignment: HDDVSGTRTCMADGBVB ----CGTGKCCGCGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Original Motif Reverse Complement Backward 3 11 0.0361963 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW ---------CCGCGGRCACG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 80 Motif name: taaacgatgcc Consensus sequence (original motif): TAAACGATGCC Consensus sequence (reverse complement motif): GGCATCGTTTA ************************************************************************ Best Matches for Motif ID 80 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00114 Homez Original Motif Reverse Complement Backward 3 11 0.0207645 Species: Mus musculus Consensus sequence (original motif): AHWWMATCGTTTTBADD Consensus sequence (reverse complement motif): HDTVAAAACGATRWWHT Alignment: HDTVAAAACGATRWWHT ----TAAACGATGCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Reverse Complement Reverse Complement Forward 1 11 0.0294316 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: VVVWTTGTTTAMATTWD GGCATCGTTTA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Original Motif Original Motif Backward 1 11 0.030091 Species: Mus musculus Consensus sequence (original motif): HDHADGTAAACAAAVVH Consensus sequence (reverse complement motif): DVVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH ------TAAACGATGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Reverse Complement Reverse Complement Backward 7 11 0.0306614 Species: Mus musculus Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: BBVTTTGTTTACATTDD GGCATCGTTTA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Reverse Complement Original Motif Forward 10 11 0.0342477 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: DBBVDDDRTRGCGTCBBYTHGA ---------GGCATCGTTTA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00040 Irf5_primary Reverse Complement Reverse Complement Forward 3 11 0.0345017 Species: Mus musculus Consensus sequence (original motif): DDDWAYCGAAACYDV Consensus sequence (reverse complement motif): BDKGTTTCGKTWDDD Alignment: BDKGTTTCGKTWDDD --GGCATCGTTTA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_primary Original Motif Reverse Complement Forward 3 11 0.0351616 Species: Mus musculus Consensus sequence (original motif): HADTBVADGATGCATCMTGMVHB Consensus sequence (reverse complement motif): VHVRCAYGATGCATCDTVVADTH Alignment: VHVRCAYGATGCATCDTVVADTH --TAAACGATGCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00232 Dobox4 Reverse Complement Reverse Complement Backward 2 11 0.0371486 Species: Mus musculus Consensus sequence (original motif): HWHWTAGATACCCYWTD Consensus sequence (reverse complement motif): DAWKGGGTATCTAWHWH Alignment: DAWKGGGTATCTAWHWH -----GGCATCGTTTA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Reverse Complement Reverse Complement Backward 7 11 0.0384798 Species: Mus musculus Consensus sequence (original motif): HHWAWGTAAAYAAAVDB Consensus sequence (reverse complement motif): BDVTTTKTTTACWTWHH Alignment: BDVTTTKTTTACWTWHH GGCATCGTTTA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00011 Irf6_primary Reverse Complement Reverse Complement Forward 6 11 0.0388532 Species: Mus musculus Consensus sequence (original motif): HDDAHCGAAACYAVDDD Consensus sequence (reverse complement motif): DHDBTKGTTTCGHTHDD Alignment: DHDBTKGTTTCGHTHDD -----GGCATCGTTTA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 81 Motif name: ctatacggacg Consensus sequence (original motif): CTATACGGACG Consensus sequence (reverse complement motif): CGTCCGTATAG ************************************************************************ Best Matches for Motif ID 81 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00038 Spdef_primary Original Motif Reverse Complement Forward 3 11 0.027939 Species: Mus musculus Consensus sequence (original motif): VHRCATCCGGATHHBB Consensus sequence (reverse complement motif): VVHHATCCGGATGKHV Alignment: VVHHATCCGGATGKHV --CTATACGGACG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Original Motif Forward 1 11 0.0308121 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV CTATACGGACG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Original Motif Reverse Complement Forward 1 11 0.0328673 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGKWTH Consensus sequence (reverse complement motif): HAWYCCGGAAGTHBBD Alignment: HAWYCCGGAAGTHBBD CTATACGGACG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00418 Etv6 Reverse Complement Original Motif Backward 1 11 0.0334005 Species: Mus musculus Consensus sequence (original motif): DVHBTACTTCCGGHTHB Consensus sequence (reverse complement motif): BHAHCCGGAAGTABDVD Alignment: BHAHCCGGAAGTABDVD ------CGTCCGTATAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Original Motif Original Motif Forward 1 11 0.0336391 Species: Mus musculus Consensus sequence (original motif): BWAHSMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRSDTWV Alignment: BWAHSMGGAAGTWD CTATACGGACG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Reverse Complement Original Motif Backward 2 11 0.0346533 Species: Mus musculus Consensus sequence (original motif): DBDHCGTGTGCAAMDH Consensus sequence (reverse complement motif): HDYTTGCACACGDHBH Alignment: DBDHCGTGTGCAAMDH ----CGTCCGTATAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00135 Hoxc12 Original Motif Reverse Complement Backward 3 11 0.0360998 Species: Mus musculus Consensus sequence (original motif): HHRGGTCGTAAAWHBDH Consensus sequence (reverse complement motif): DDVHWTTTACGACCKHH Alignment: DDVHWTTTACGACCKHH ----CTATACGGACG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_primary Reverse Complement Reverse Complement Backward 3 11 0.0365466 Species: Mus musculus Consensus sequence (original motif): BHBBKKACGTMMVDBVB Consensus sequence (reverse complement motif): BVVDVRYACGTRYVBHB Alignment: BVVDVRYACGTRYVBHB ----CGTCCGTATAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00015 Ehf_primary Original Motif Original Motif Forward 2 11 0.0367131 Species: Mus musculus Consensus sequence (original motif): VBDABCCGGAAGTDD Consensus sequence (reverse complement motif): DDACTTCCGGBTHBB Alignment: VBDABCCGGAAGTDD -CTATACGGACG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00421 Etv1 Reverse Complement Reverse Complement Backward 2 11 0.0373 Species: Mus musculus Consensus sequence (original motif): MVHBACCGGAAGTVDVH Consensus sequence (reverse complement motif): HBDBACTTCCGGTBHVY Alignment: HBDBACTTCCGGTBHVY -----CGTCCGTATAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 82 Motif name: gCGCGCsCgsG Consensus sequence (original motif): GCGCGCSCGCG Consensus sequence (reverse complement motif): CGCGSGCGCGC ************************************************************************ Best Matches for Motif ID 82 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Reverse Complement Original Motif Forward 2 11 0 Species: Mus musculus Consensus sequence (original motif): DDGCGCGCGCRCHYRD Consensus sequence (reverse complement motif): DMMDGMGCGCGCGCHD Alignment: DDGCGCGCGCRCHYRD -CGCGSGCGCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Reverse Complement Reverse Complement Backward 5 11 0.0102009 Species: Mus musculus Consensus sequence (original motif): VHDADGGCGCGCSHW Consensus sequence (reverse complement motif): WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB CGCGSGCGCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_primary Reverse Complement Reverse Complement Forward 1 11 0.0124455 Species: Mus musculus Consensus sequence (original motif): VHDARGGCGCGCVHH Consensus sequence (reverse complement motif): HHVGCGCGCCKTDHB Alignment: HHVGCGCGCCKTDHB CGCGSGCGCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Original Motif Backward 8 11 0.0192204 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: WHVBVVMACGCGCGTCDYHWDH ----CGCGSGCGCGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Reverse Complement Original Motif Forward 8 11 0.0231982 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB -------CGCGSGCGCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Original Motif Backward 3 11 0.0289369 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB -GCGCGCSCGCG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Original Motif Forward 7 11 0.0297254 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV ------GCGCGCSCGCG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00088 Plagl1_primary Reverse Complement Original Motif Forward 2 11 0.0316913 Species: Mus musculus Consensus sequence (original motif): BHDGGGGSSCCCCBVV Consensus sequence (reverse complement motif): VBVGGGGSSCCCCHHV Alignment: BHDGGGGSSCCCCBVV -CGCGSGCGCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Reverse Complement Backward 3 11 0.0323627 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB ----CGCGSGCGCGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Reverse Complement Reverse Complement Forward 6 11 0.039112 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV -----CGCGSGCGCGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 83 Motif name: srACyCCGAyr Consensus sequence (original motif): SRACYCCGAYR Consensus sequence (reverse complement motif): KKTCGGKGTKS ************************************************************************ Best Matches for Motif ID 83 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00024 Glis2_primary Reverse Complement Reverse Complement Forward 3 11 0.0129914 Species: Mus musculus Consensus sequence (original motif): HHHVGACCCCCCVBRD Consensus sequence (reverse complement motif): HKBBGGGGGGTCVHHH Alignment: HKBBGGGGGGTCVHHH --KKTCGGKGTKS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Original Motif Forward 7 11 0.013032 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV ------SRACYCCGAYR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_secondary Original Motif Reverse Complement Backward 5 11 0.0132459 Species: Mus musculus Consensus sequence (original motif): DDBVHATAGGGGRBRMB Consensus sequence (reverse complement motif): BYMBKCCCCTATDVBHD Alignment: BYMBKCCCCTATDVBHD --SRACYCCGAYR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_primary Original Motif Original Motif Forward 3 11 0.0135374 Species: Mus musculus Consensus sequence (original motif): HVVHACCCGCATVDHD Consensus sequence (reverse complement motif): DHDVATGCGGGTHVVH Alignment: HVVHACCCGCATVDHD --SRACYCCGAYR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_secondary Original Motif Original Motif Forward 4 11 0.0136908 Species: Mus musculus Consensus sequence (original motif): DKKWDACCCCCAHTDDV Consensus sequence (reverse complement motif): VDDAHTGGGGGTHWYYD Alignment: DKKWDACCCCCAHTDDV ---SRACYCCGAYR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_primary Reverse Complement Reverse Complement Forward 3 11 0.0146089 Species: Mus musculus Consensus sequence (original motif): DDVCCCCCCHAAWHB Consensus sequence (reverse complement motif): VHWTTHGGGGGGVDD Alignment: VHWTTHGGGGGGVDD --KKTCGGKGTKS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00040 Irf5_primary Reverse Complement Reverse Complement Forward 5 11 0.0148195 Species: Mus musculus Consensus sequence (original motif): DDDWAYCGAAACYDV Consensus sequence (reverse complement motif): BDKGTTTCGKTWDDD Alignment: BDKGTTTCGKTWDDD ----KKTCGGKGTKS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Original Motif Original Motif Forward 9 11 0.014859 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: ABBBBVVRGACCACCCACRDBBM --------SRACYCCGAYR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Reverse Complement Reverse Complement Backward 5 11 0.0153296 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD KKTCGGKGTKS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Reverse Complement Reverse Complement Backward 10 11 0.0155548 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DBCDWHCTGGGTGGTCMDHBBAH ---KKTCGGKGTKS--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 84 Motif name: TFW3 Consensus sequence (original motif): GCACTG Consensus sequence (reverse complement motif): CAGTGC ************************************************************************ Best Matches for Motif ID 84 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Reverse Complement Reverse Complement Forward 8 6 0 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: BBBAVTGCAGTGBBVDD -------CAGTGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00095 Zfp691_primary Original Motif Reverse Complement Forward 8 6 0.020963 Species: Mus musculus Consensus sequence (original motif): BDHVCAGTGCTCMBHDD Consensus sequence (reverse complement motif): DDHBYGAGCACTGBHHB Alignment: DDHBYGAGCACTGBHHB -------GCACTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_secondary Reverse Complement Reverse Complement Forward 8 6 0.0248871 Species: Mus musculus Consensus sequence (original motif): CHVTCACTGGBADHDD Consensus sequence (reverse complement motif): DDHHTBCCAGTGABHG Alignment: DDHHTBCCAGTGABHG -------CAGTGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_secondary Reverse Complement Original Motif Forward 7 6 0.0303167 Species: Mus musculus Consensus sequence (original motif): GYCGCGCARBGCVB Consensus sequence (reverse complement motif): VVGCVMTGCGCGKC Alignment: GYCGCGCARBGCVB ------CAGTGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_secondary Reverse Complement Reverse Complement Backward 3 6 0.0420592 Species: Mus musculus Consensus sequence (original motif): DDDCACAGCAKGHVD Consensus sequence (reverse complement motif): DVHCYTGCTGTGHDH Alignment: DVHCYTGCTGTGHDH -------CAGTGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_secondary Original Motif Original Motif Forward 3 6 0.0499082 Species: Mus musculus Consensus sequence (original motif): BHDCVCAGCAGGHVD Consensus sequence (reverse complement motif): DVHCCTGCTGBGDDB Alignment: BHDCVCAGCAGGHVD --GCACTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Reverse Complement Reverse Complement Forward 8 6 0.0507672 Species: Mus musculus Consensus sequence (original motif): HDVRCCACTTGARADBD Consensus sequence (reverse complement motif): DVDTKTCAAGTGGKBDH Alignment: DVDTKTCAAGTGGKBDH -------CAGTGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00107 Nkx2-4 Reverse Complement Reverse Complement Backward 5 6 0.0519322 Species: Mus musculus Consensus sequence (original motif): HDAVCCACTTRAMWTT Consensus sequence (reverse complement motif): AAWYTMAAGTGGVTDH Alignment: AAWYTMAAGTGGVTDH ------CAGTGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_2205.1 Reverse Complement Reverse Complement Forward 9 6 0.0530479 Species: Mus musculus Consensus sequence (original motif): AVDHCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGHHVT Alignment: WVVHWTWACAGCGHHVT --------CAGTGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Original Motif Original Motif Backward 8 6 0.0539075 Species: Mus musculus Consensus sequence (original motif): HHDCVCAGCAKGVVD Consensus sequence (reverse complement motif): DVBCYTGCTGBGDDD Alignment: HHDCVCAGCAKGVVD --GCACTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 85 Motif name: TFW1 Consensus sequence (original motif): TTGCGCAA Consensus sequence (reverse complement motif): TTGCGCAA ************************************************************************ Best Matches for Motif ID 85 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_secondary Original Motif Reverse Complement Forward 5 8 0.00957029 Species: Mus musculus Consensus sequence (original motif): HVDTTGCAAAAWWDH Consensus sequence (reverse complement motif): HDWWTTTTGCAADBD Alignment: HDWWTTTTGCAADBD ----TTGCGCAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Original Motif Original Motif Backward 4 8 0.0184619 Species: Mus musculus Consensus sequence (original motif): DBDHCGTGTGCAAMDH Consensus sequence (reverse complement motif): HDYTTGCACACGDHBH Alignment: DBDHCGTGTGCAAMDH -----TTGCGCAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00259 Hoxb6 Original Motif Original Motif Backward 8 8 0.0226004 Species: Mus musculus Consensus sequence (original motif): WWTDBGTAATTACVDB Consensus sequence (reverse complement motif): VDVGTAATTACBDAWW Alignment: WWTDBGTAATTACVDB -TTGCGCAA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Original Motif Reverse Complement Forward 6 8 0.0239956 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR -----TTGCGCAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_secondary Reverse Complement Reverse Complement Backward 5 8 0.0261465 Species: Mus musculus Consensus sequence (original motif): DBDDRTGCCCAWDHDV Consensus sequence (reverse complement motif): VHHDWTGGGCAMDHBH Alignment: VHHDWTGGGCAMDHBH ----TTGCGCAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00004 Sox14_secondary Original Motif Original Motif Forward 2 8 0.0272314 Species: Mus musculus Consensus sequence (original motif): BKBASACAATRGHBB Consensus sequence (reverse complement motif): BBDCMATTGTSTBRB Alignment: BKBASACAATRGHBB -TTGCGCAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_secondary Original Motif Reverse Complement Backward 9 8 0.0278778 Species: Mus musculus Consensus sequence (original motif): DDDYCCCATTGTVHABH Consensus sequence (reverse complement motif): HBTHVACAATGGGMDHD Alignment: HBTHVACAATGGGMDHD -TTGCGCAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00138 Bsx Original Motif Original Motif Forward 8 8 0.0281625 Species: Mus musculus Consensus sequence (original motif): VVRDYAATTRBYBVAD Consensus sequence (reverse complement motif): HTVVKBKAATTMHMBV Alignment: VVRDYAATTRBYBVAD -------TTGCGCAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00126 Dlx2 Original Motif Original Motif Forward 8 8 0.030109 Species: Mus musculus Consensus sequence (original motif): VVDRTAATTABHHHAB Consensus sequence (reverse complement motif): BTDHHBTAATTAKDVV Alignment: VVDRTAATTABHHHAB -------TTGCGCAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00182 Hoxa6 Original Motif Original Motif Backward 2 8 0.0308523 Species: Mus musculus Consensus sequence (original motif): AMGKTAATTACCHHAD Consensus sequence (reverse complement motif): DTHHGGTAATTAYCYT Alignment: AMGKTAATTACCHHAD -------TTGCGCAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 86 Motif name: TFW2 Consensus sequence (original motif): YGGACTTACG Consensus sequence (reverse complement motif): CGTAAGTCCK ************************************************************************ Best Matches for Motif ID 86 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_secondary Original Motif Reverse Complement Forward 5 10 0 Species: Mus musculus Consensus sequence (original motif): BBHHAAAGTCCAMTHH Consensus sequence (reverse complement motif): HHAYTGGACTTTHDBV Alignment: HHAYTGGACTTTHDBV ----YGGACTTACG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00259 Hoxb6 Original Motif Reverse Complement Backward 5 10 0.0133265 Species: Mus musculus Consensus sequence (original motif): WWTDBGTAATTACVDB Consensus sequence (reverse complement motif): VDVGTAATTACBDAWW Alignment: VDVGTAATTACBDAWW --YGGACTTACG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00228 Bapx1 Reverse Complement Reverse Complement Backward 5 10 0.0145352 Species: Mus musculus Consensus sequence (original motif): VHHAACCACTTAAVVAH Consensus sequence (reverse complement motif): DTBVTTAAGTGGTTHHV Alignment: DTBVTTAAGTGGTTHHV ---CGTAAGTCCK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00190 Nkx2-3 Reverse Complement Reverse Complement Backward 6 10 0.0167419 Species: Mus musculus Consensus sequence (original motif): YYTTAAGTACTTAAHD Consensus sequence (reverse complement motif): HHTTAAGTACTTAAMK Alignment: HHTTAAGTACTTAAMK -CGTAAGTCCK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00389 Nkx3-1 Reverse Complement Reverse Complement Forward 3 10 0.0201669 Species: Mus musculus Consensus sequence (original motif): DDHDAAGTACTTAAADB Consensus sequence (reverse complement motif): BDTTTAAGTACTTDDDD Alignment: BDTTTAAGTACTTDDDD --CGTAAGTCCK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00418 Etv6 Original Motif Reverse Complement Forward 6 10 0.0206612 Species: Mus musculus Consensus sequence (original motif): DVHBTACTTCCGGHTHB Consensus sequence (reverse complement motif): BHAHCCGGAAGTABDVD Alignment: BHAHCCGGAAGTABDVD -----YGGACTTACG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00112 Gsc Original Motif Reverse Complement Backward 4 10 0.0208429 Species: Mus musculus Consensus sequence (original motif): HVWHRYTAATCCSYDHV Consensus sequence (reverse complement motif): BHDMSGGATTAMMDWBH Alignment: BHDMSGGATTAMMDWBH ----YGGACTTACG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_secondary Original Motif Reverse Complement Backward 4 10 0.0217998 Species: Mus musculus Consensus sequence (original motif): VVDBATACGCCCHAHHD Consensus sequence (reverse complement motif): DHDTHGGGCGTATBHBB Alignment: DHDTHGGGCGTATBHBB ----YGGACTTACG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Reverse Complement Reverse Complement Forward 6 10 0.0220676 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGDWDB Consensus sequence (reverse complement motif): BDWDCCGGAAGTHBBD Alignment: BDWDCCGGAAGTHBBD -----CGTAAGTCCK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Reverse Complement Reverse Complement Forward 6 10 0.0221416 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGKWTH Consensus sequence (reverse complement motif): HAWYCCGGAAGTHBBD Alignment: HAWYCCGGAAGTHBBD -----CGTAAGTCCK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 87 Motif name: TFF1 Consensus sequence (original motif): AGGACAAAGAVV Consensus sequence (reverse complement motif): VVTCTTTGTCCT ************************************************************************ Best Matches for Motif ID 87 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Original Motif Backward 3 12 0.0258536 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HBDDDAACAAAGRVBHH ---AGGACAAAGAVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00072 IRC900814_primary Original Motif Original Motif Backward 1 12 0.0258585 Species: Mus musculus Consensus sequence (original motif): DDHTACGACAAAWDDB Consensus sequence (reverse complement motif): BHDWTTTGTCGTAHDD Alignment: DDHTACGACAAAWDDB ----AGGACAAAGAVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Original Motif Forward 4 12 0.0284165 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH ---AGGACAAAGAVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondary Original Motif Original Motif Backward 2 12 0.0317868 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: VVDBASACAAAGRADH ---AGGACAAAGAVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Backward 3 12 0.0318041 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD ---AGGACAAAGAVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Original Motif Original Motif Backward 3 12 0.0329392 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: HHHASATCAAAGVRHHH ---AGGACAAAGAVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Original Motif Original Motif Forward 4 12 0.0344802 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH ---AGGACAAAGAVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_secondary Reverse Complement Reverse Complement Backward 4 12 0.0344812 Species: Mus musculus Consensus sequence (original motif): HVHRGCACACAAHHHV Consensus sequence (reverse complement motif): BHHHTTGTGTGCKHVD Alignment: BHHHTTGTGTGCKHVD -VVTCTTTGTCCT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Reverse Complement Original Motif Backward 4 12 0.0344876 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: DDDYCCTTTGATSTDDV --VVTCTTTGTCCT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00020 Atf1_secondary Original Motif Original Motif Backward 1 12 0.0352035 Species: Mus musculus Consensus sequence (original motif): VDATGACGADYADH Consensus sequence (reverse complement motif): DDTMDTCGTCATDV Alignment: VDATGACGADYADH --AGGACAAAGAVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 88 Motif name: TFF11 Consensus sequence (original motif): CTGCTGBDBBDGBD Consensus sequence (reverse complement motif): HVCDBBDBCAGCAG ************************************************************************ Best Matches for Motif ID 88 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_1765.2 Reverse Complement Reverse Complement Forward 1 14 0.054015 Species: Mus musculus Consensus sequence (original motif): AVDVCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGBHBT Alignment: WVVHWTWACAGCGBHBT HVCDBBDBCAGCAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_2205.1 Reverse Complement Reverse Complement Forward 1 14 0.0543852 Species: Mus musculus Consensus sequence (original motif): AVDHCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGHHVT Alignment: WVVHWTWACAGCGHHVT HVCDBBDBCAGCAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00027 Osr1_primary Original Motif Reverse Complement Backward 1 14 0.0554469 Species: Mus musculus Consensus sequence (original motif): HHDHACRGTAGCHVHD Consensus sequence (reverse complement motif): DHBHGCTACKGTHDHH Alignment: HHDHACRGTAGCHVHD --CTGCTGBDBBDGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00052 Osr2_secondary Reverse Complement Reverse Complement Backward 3 14 0.0576412 Species: Mus musculus Consensus sequence (original motif): AHHHGCTACYTRMWHV Consensus sequence (reverse complement motif): VDWRKAKGTAGCHHDT Alignment: VDWRKAKGTAGCHHDT HVCDBBDBCAGCAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Reverse Complement Original Motif Forward 1 14 0.0581121 Species: Mus musculus Consensus sequence (original motif): BBYVVCAGCTGCBVHHD Consensus sequence (reverse complement motif): HHDVVGCAGCTGVBKVB Alignment: HHDVVGCAGCTGVBKVB HVCDBBDBCAGCAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00027 Osr1_secondary Reverse Complement Reverse Complement Forward 1 14 0.0586391 Species: Mus musculus Consensus sequence (original motif): RHHHGCTACYWRHDHV Consensus sequence (reverse complement motif): VHDHKWKGTAGCHHDK Alignment: VHDHKWKGTAGCHHDK HVCDBBDBCAGCAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00122 Tgif1 Reverse Complement Original Motif Forward 1 14 0.0592876 Species: Mus musculus Consensus sequence (original motif): DABWWTGACAGCTVVBD Consensus sequence (reverse complement motif): DBVVAGCTGTCAWWVTH Alignment: DBVVAGCTGTCAWWVTH HVCDBBDBCAGCAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00052 Osr2_primary Original Motif Reverse Complement Forward 3 14 0.0610328 Species: Mus musculus Consensus sequence (original motif): HHVHACRGTAGCHHHD Consensus sequence (reverse complement motif): HHHHGCTACKGTHVHH Alignment: HHHHGCTACKGTHVHH --CTGCTGBDBBDGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Original Motif Reverse Complement Forward 9 14 0.0628447 Species: Mus musculus Consensus sequence (original motif): HDTBHHCCHTAGCAACVVDHHHH Consensus sequence (reverse complement motif): HHHHDVVGTTGCTAHGGDHBAHH Alignment: HHHHDVVGTTGCTAHGGDHBAHH --------CTGCTGBDBBDGBD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_secondary Original Motif Reverse Complement Backward 1 14 0.0632938 Species: Mus musculus Consensus sequence (original motif): BDDRVGACCACCHBDVB Consensus sequence (reverse complement motif): BBDVHGGTGGTCBKDDB Alignment: BBDVHGGTGGTCBKDDB ---CTGCTGBDBBDGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 89 Motif name: TFM1 Consensus sequence (original motif): CACACACACACWCACACA Consensus sequence (reverse complement motif): TGTGTGWGTGTGTGTGTG ************************************************************************ Best Matches for Motif ID 89 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Original Motif Forward 6 18 0.0442064 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -----CACACACACACWCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Reverse Complement Original Motif Forward 1 18 0.0448118 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB TGTGTGWGTGTGTGTGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Reverse Complement Original Motif Forward 1 18 0.0469936 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC TGTGTGWGTGTGTGTGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Forward 3 18 0.0474757 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH --CACACACACACWCACACA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Original Motif Original Motif Backward 2 18 0.0483565 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ---CACACACACACWCACACA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Original Motif Forward 6 18 0.0502008 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV -----CACACACACACWCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Reverse Complement Reverse Complement Forward 4 18 0.0557575 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: BDVBCDACGCKCGCGTBHRKHD ---TGTGTGWGTGTGTGTGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00096 Sox13_secondary Original Motif Reverse Complement Backward 1 17 0.549115 Species: Mus musculus Consensus sequence (original motif): DDDHTGGGTGGGHAHHD Consensus sequence (reverse complement motif): DHHTHCCCACCCAHDDH Alignment: -DDDHTGGGTGGGHAHHD CACACACACACWCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Original Motif Original Motif Forward 7 17 0.550082 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB- ------CACACACACACWCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00228 Bapx1 Original Motif Original Motif Backward 2 17 0.553591 Species: Mus musculus Consensus sequence (original motif): VHHAACCACTTAAVVAH Consensus sequence (reverse complement motif): DTBVTTAAGTGGTTHHV Alignment: -VHHAACCACTTAAVVAH CACACACACACWCACACA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 90 Motif name: TFM2 Consensus sequence (original motif): CHHCHBTCCTSCYTCTGC Consensus sequence (reverse complement motif): GCAGAKGSAGGABDGHDG ************************************************************************ Best Matches for Motif ID 90 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Original Motif Original Motif Forward 1 18 0.0498793 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH CHHCHBTCCTSCYTCTGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_primary Reverse Complement Original Motif Backward 1 18 0.0564418 Species: Mus musculus Consensus sequence (original motif): HADTBVADGATGCATCMTGMVHB Consensus sequence (reverse complement motif): VHVRCAYGATGCATCDTVVADTH Alignment: HADTBVADGATGCATCMTGMVHB -----GCAGAKGSAGGABDGHDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Original Motif Reverse Complement Backward 5 18 0.0565957 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH CHHCHBTCCTSCYTCTGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Reverse Complement Backward 6 18 0.0573354 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH CHHCHBTCCTSCYTCTGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Original Motif Backward 6 18 0.0598613 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH CHHCHBTCCTSCYTCTGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Backward 4 18 0.0598775 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH --CHHCHBTCCTSCYTCTGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Reverse Complement Original Motif Forward 3 18 0.0606451 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB --GCAGAKGSAGGABDGHDG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Original Motif Reverse Complement Backward 4 18 0.0626287 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH -CHHCHBTCCTSCYTCTGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Reverse Complement Backward 4 18 0.0626567 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV -CHHCHBTCCTSCYTCTGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Original Motif Reverse Complement Backward 4 18 0.064761 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV -CHHCHBTCCTSCYTCTGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 91 Motif name: TFM3 Consensus sequence (original motif): KTTTTTTKTTTTTTDAAB Consensus sequence (reverse complement motif): BTTHAAAAAAYAAAAAAR ************************************************************************ Best Matches for Motif ID 91 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Original Motif Forward 1 18 0.0426153 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: BDHDDADAGATAAGADHBDHVD BTTHAAAAAAYAAAAAAR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Original Motif Backward 3 18 0.0478771 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW --BTTHAAAAAAYAAAAAAR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Reverse Complement Reverse Complement Forward 1 18 0.0564691 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC BTTHAAAAAAYAAAAAAR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Original Motif Reverse Complement Backward 1 17 0.52452 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: -VBDDAAAAAAAAMVBHH KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_secondary Original Motif Reverse Complement Backward 1 17 0.531868 Species: Mus musculus Consensus sequence (original motif): DBTHHAAAAAAAAVHDH Consensus sequence (reverse complement motif): DDHBTTTTTTTTHDAVH Alignment: -DDHBTTTTTTTTHDAVH KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Original Motif Reverse Complement Backward 1 17 0.539211 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: -HDDDATTTTATTKVRDB KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Original Motif Reverse Complement Forward 2 17 0.539687 Species: Mus musculus Consensus sequence (original motif): HHWAWGTAAAYAAAVDB Consensus sequence (reverse complement motif): BDVTTTKTTTACWTWHH Alignment: HHWAWGTAAAYAAAVDB- -KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Reverse Complement Original Motif Backward 2 17 0.542507 Species: Mus musculus Consensus sequence (original motif): HDHADGTAAACAAAVVH Consensus sequence (reverse complement motif): DVVTTTGTTTACDTHDH Alignment: -DVVTTTGTTTACDTHDH BTTHAAAAAAYAAAAAAR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Reverse Complement Original Motif Backward 2 17 0.547029 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: -VVVWTTGTTTAMATTWD BTTHAAAAAAYAAAAAAR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00051 Sox8_primary Reverse Complement Reverse Complement Backward 2 17 0.547298 Species: Mus musculus Consensus sequence (original motif): DDATBWATTGTTHHDDD Consensus sequence (reverse complement motif): DDDHDAACAATWBATDD Alignment: -DDDHDAACAATWBATDD BTTHAAAAAAYAAAAAAR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 92 Motif name: TFM11 Consensus sequence (original motif): CAMACACACACAYDCACACA Consensus sequence (reverse complement motif): TGTGTGDKTGTGTGTGTRTG ************************************************************************ Best Matches for Motif ID 92 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Reverse Complement Original Motif Backward 4 20 0.0426758 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB TGTGTGDKTGTGTGTGTRTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Reverse Complement Original Motif Backward 3 20 0.0439623 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB TGTGTGDKTGTGTGTGTRTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Original Motif Backward 1 20 0.0449001 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH ---CAMACACACACAYDCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Forward 1 20 0.0492241 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH CAMACACACACAYDCACACA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Original Motif Original Motif Backward 2 20 0.0524009 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH -CAMACACACACAYDCACACA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Original Motif Forward 4 20 0.0527926 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV ---CAMACACACACAYDCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Reverse Complement Forward 2 20 0.0547661 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM -CAMACACACACAYDCACACA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Original Motif Original Motif Forward 2 20 0.0575159 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB -CAMACACACACAYDCACACA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Original Motif Original Motif Forward 5 19 0.551038 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB- ----CAMACACACACAYDCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Original Motif Forward 4 19 0.551577 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV- ---CAMACACACACAYDCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 93 Motif name: TFM12 Consensus sequence (original motif): RAGKGMAGVRRGSRCASAGV Consensus sequence (reverse complement motif): VCTSTGKSCMKBCTRCYCTK ************************************************************************ Best Matches for Motif ID 93 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Original Motif Original Motif Forward 1 20 0.0465838 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: MWSMBAARRATGCDCABHATGD RAGKGMAGVRRGSRCASAGV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Reverse Complement Forward 3 20 0.0472219 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH --VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Reverse Complement Original Motif Forward 1 20 0.0477526 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH VCTSTGKSCMKBCTRCYCTK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Reverse Complement Reverse Complement Backward 3 20 0.0479772 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC VCTSTGKSCMKBCTRCYCTK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Reverse Complement Reverse Complement Forward 1 20 0.0487318 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH VCTSTGKSCMKBCTRCYCTK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Reverse Complement Original Motif Backward 4 20 0.0495675 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH VCTSTGKSCMKBCTRCYCTK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Reverse Complement Backward 3 20 0.0506701 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH VCTSTGKSCMKBCTRCYCTK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Reverse Complement Forward 1 20 0.0532516 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB RAGKGMAGVRRGSRCASAGV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Reverse Complement Forward 2 20 0.0536082 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW -VCTSTGKSCMKBCTRCYCTK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Original Motif Reverse Complement Forward 4 20 0.0554568 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB ---RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 5 Motif ID: 94 Motif name: TFM13 Consensus sequence (original motif): TTTTTTTKTTKTTTAATTHW Consensus sequence (reverse complement motif): WHAATTAAARAARAAAAAAA ************************************************************************ Best Matches for Motif ID 94 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Original Motif Forward 2 20 0.0558709 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: BDHDDADAGATAAGADHBDHVD -WHAATTAAARAARAAAAAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Original Motif Forward 1 20 0.0604961 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH WHAATTAAARAARAAAAAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Original Motif Original Motif Backward 2 20 0.0784238 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH -TTTTTTTKTTKTTTAATTHW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Original Motif Backward 1 20 0.0790353 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB --TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Original Motif Backward 4 19 0.574613 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: -MWSMBAARRATGCDCABHATGD WHAATTAAARAARAAAAAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_secondary Reverse Complement Original Motif Forward 4 17 1.5444 Species: Mus musculus Consensus sequence (original motif): VBDDAAAAAAAAMVBHH Consensus sequence (reverse complement motif): HHVBYTTTTTTTTDDVV Alignment: HHVBYTTTTTTTTDDVV--- ---WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00262 Lhx1 Original Motif Reverse Complement Backward 1 17 1.54972 Species: Mus musculus Consensus sequence (original motif): VVDATTAATTAAWWAHB Consensus sequence (reverse complement motif): BHTWWTTAATTAATDVV Alignment: ---VVDATTAATTAAWWAHB TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00188 Lmx1a Original Motif Reverse Complement Backward 1 17 1.55162 Species: Mus musculus Consensus sequence (original motif): CVHHTTAATTAAWWWHB Consensus sequence (reverse complement motif): BDWWWTTAATTAAHHVG Alignment: ---BDWWWTTAATTAAHHVG TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00244 Tlx2 Original Motif Reverse Complement Backward 2 17 1.55254 Species: Mus musculus Consensus sequence (original motif): BAATHAATTAATAAHWW Consensus sequence (reverse complement motif): WWDTTATTAATTHATTV Alignment: ---BAATHAATTAATAAHWW TTTTTTTKTTKTTTAATTHW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00169 Lmx1b Reverse Complement Reverse Complement Forward 1 17 1.55258 Species: Mus musculus Consensus sequence (original motif): VDWWWTTAATTAATDHB Consensus sequence (reverse complement motif): BHDATTAATTAAWWWHB Alignment: BHDATTAATTAAWWWHB--- WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-20-2016 22:58:31 Runtime: 1057.23 seconds MOTIFSIM is written by Ngoc Tam L. Tran