Best Matches in Database for Each Motif (Highest to Lowest)
Dataset #: 1 |
Motif ID: 1 |
Motif name: Motif 1 |
Original motif |
Reverse complement motif |
Consensus sequence: RGGAAR |
Consensus sequence: MTTCCK |
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Best Matches for Motif ID 1 (Highest to Lowest)
Motif ID: |
UP00090 |
Motif name: |
Elf3_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
5 |
Number of overlap: |
6 |
Similarity score: |
0 |
Alignment:
TDAMTTCCYYDTD
---MTTCCK----
Original motif |
Reverse complement motif |
Consensus sequence: DAHMMGGAARTDA |
Consensus sequence: TDAMTTCCYYDTD |
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Motif ID: |
UP00085 |
Motif name: |
Sfpi1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
6 |
Similarity score: |
0.00351709 |
Alignment:
BDAWGVGGAAGTDH
-----RGGAAR---
Original motif |
Reverse complement motif |
Consensus sequence: BDAWGVGGAAGTDH |
Consensus sequence: HDACTTCCBCWTDV |
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Motif ID: |
UP00414 |
Motif name: |
Ets1 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
6 |
Similarity score: |
0.00356242 |
Alignment:
DDBAMTTCCGGTDHDHB
----MTTCCK-------
Original motif |
Reverse complement motif |
Consensus sequence: BDDDHACCGGAARTVDD |
Consensus sequence: DDBAMTTCCGGTDHDHB |
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Motif ID: |
UP00409 |
Motif name: |
Elf5 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
6 |
Similarity score: |
0.00439981 |
Alignment:
BWAHSMGGAAGTWD
-----RGGAAR---
Original motif |
Reverse complement motif |
Consensus sequence: BWAHSMGGAAGTWD |
Consensus sequence: DWACTTCCRSDTWV |
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Motif ID: |
UP00015 |
Motif name: |
Ehf_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
6 |
Similarity score: |
0.00655644 |
Alignment:
DDACTTCCGGBTHBB
---MTTCCK------
Original motif |
Reverse complement motif |
Consensus sequence: VBDABCCGGAAGTDD |
Consensus sequence: DDACTTCCGGBTHBB |
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Motif ID: |
UP00013 |
Motif name: |
Gabpa_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
6 |
Similarity score: |
0.00663687 |
Alignment:
BHHHACTTCCGGTHHBD
-----MTTCCK------
Original motif |
Reverse complement motif |
Consensus sequence: HVHHACCGGAAGTDHHV |
Consensus sequence: BHHHACTTCCGGTHHBD |
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Motif ID: |
UP00413 |
Motif name: |
Elf4 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
6 |
Similarity score: |
0.00896416 |
Alignment:
DBBHACTTCCGGKWTH
-----MTTCCK-----
Original motif |
Reverse complement motif |
Consensus sequence: DBBHACTTCCGGKWTH |
Consensus sequence: HAWYCCGGAAGTHBBD |
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Motif ID: |
UP00419 |
Motif name: |
Spic |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
6 |
Similarity score: |
0.00975526 |
Alignment:
VAAAGMGGAAGTWD
-----RGGAAR---
Original motif |
Reverse complement motif |
Consensus sequence: VAAAGMGGAAGTWD |
Consensus sequence: DWACTTCCRCTTTB |
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Motif ID: |
UP00418 |
Motif name: |
Etv6 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
7 |
Number of overlap: |
6 |
Similarity score: |
0.0103447 |
Alignment:
DVHBTACTTCCGGHTHB
------MTTCCK-----
Original motif |
Reverse complement motif |
Consensus sequence: DVHBTACTTCCGGHTHB |
Consensus sequence: BHAHCCGGAAGTABDVD |
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Motif ID: |
UP00404 |
Motif name: |
Elf2 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
6 |
Similarity score: |
0.010491 |
Alignment:
DBBHACTTCCGGDWDB
-----MTTCCK-----
Original motif |
Reverse complement motif |
Consensus sequence: DBBHACTTCCGGDWDB |
Consensus sequence: BDWDCCGGAAGTHBBD |
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Dataset #: 1 |
Motif ID: 2 |
Motif name: Motif 2 |
Original motif |
Reverse complement motif |
Consensus sequence: AMACA |
Consensus sequence: TGTRT |
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Best Matches for Motif ID 2 (Highest to Lowest)
Motif ID: |
UP00042 |
Motif name: |
Gm397_second |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
7 |
Number of overlap: |
5 |
Similarity score: |
0 |
Alignment:
DVMVGCACACACKCVH
------AMACA-----
Original motif |
Reverse complement motif |
Consensus sequence: DVMVGCACACACKCVH |
Consensus sequence: HBGYGTGTGTGCVRVD |
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Motif ID: |
UP00025 |
Motif name: |
Foxk1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
8 |
Number of overlap: |
5 |
Similarity score: |
0.00605402 |
Alignment:
DDAATGTAAACAAAVVB
-------AMACA-----
Original motif |
Reverse complement motif |
Consensus sequence: DDAATGTAAACAAAVVB |
Consensus sequence: BBVTTTGTTTACATTDD |
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Motif ID: |
UP00041 |
Motif name: |
Foxj1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
5 |
Similarity score: |
0.00753267 |
Alignment:
HDHRTAAACAAAHDDD
-----AMACA------
Original motif |
Reverse complement motif |
Consensus sequence: HDHRTAAACAAAHDDD |
Consensus sequence: DDDHTTTGTTTAMHDH |
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Motif ID: |
UP00039 |
Motif name: |
Foxj3_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
8 |
Number of overlap: |
5 |
Similarity score: |
0.00965634 |
Alignment:
HDHADGTAAACAAAVVH
-------AMACA-----
Original motif |
Reverse complement motif |
Consensus sequence: HDHADGTAAACAAAVVH |
Consensus sequence: DVVTTTGTTTACDTHDH |
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Motif ID: |
UP00061 |
Motif name: |
Foxl1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
5 |
Similarity score: |
0.00989492 |
Alignment:
DWAATRTAAACAAWVVB
-------AMACA-----
Original motif |
Reverse complement motif |
Consensus sequence: DWAATRTAAACAAWVVB |
Consensus sequence: VVVWTTGTTTAMATTWD |
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Motif ID: |
UP00004 |
Motif name: |
Sox14_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
5 |
Similarity score: |
0.0116453 |
Alignment:
BBDCMATTGTSTBRB
-------TGTRT---
Original motif |
Reverse complement motif |
Consensus sequence: BKBASACAATRGHBB |
Consensus sequence: BBDCMATTGTSTBRB |
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Motif ID: |
UP00073 |
Motif name: |
Foxa2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
5 |
Similarity score: |
0.0143122 |
Alignment:
HHWAWGTAAAYAAAVDB
-------AMACA-----
Original motif |
Reverse complement motif |
Consensus sequence: HHWAWGTAAAYAAAVDB |
Consensus sequence: BDVTTTKTTTACWTWHH |
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Motif ID: |
UP00026 |
Motif name: |
Zscan4_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
5 |
Similarity score: |
0.0153228 |
Alignment:
BHHHTTGTGTGCKHVD
-----TGTRT------
Original motif |
Reverse complement motif |
Consensus sequence: HVHRGCACACAAHHHV |
Consensus sequence: BHHHTTGTGTGCKHVD |
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Motif ID: |
UP00011 |
Motif name: |
Irf6_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
5 |
Similarity score: |
0.024195 |
Alignment:
DHDBTKGTTTCGHTHDD
-----TGTRT-------
Original motif |
Reverse complement motif |
Consensus sequence: HDDAHCGAAACYAVDDD |
Consensus sequence: DHDBTKGTTTCGHTHDD |
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Motif ID: |
UP00000 |
Motif name: |
Smad3_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
5 |
Similarity score: |
0.0255974 |
Alignment:
HDHDDCCAGACABBHVH
-------AMACA-----
Original motif |
Reverse complement motif |
Consensus sequence: HDHDDCCAGACABBHVH |
Consensus sequence: HVHBVTGTCTGGDDHDD |
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Dataset #: 1 |
Motif ID: 3 |
Motif name: Motif 3 |
Original motif |
Reverse complement motif |
Consensus sequence: AGSCWGG |
Consensus sequence: CCWGSCT |
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Best Matches for Motif ID 3 (Highest to Lowest)
Motif ID: |
UP00035 |
Motif name: |
Hic1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
7 |
Number of overlap: |
7 |
Similarity score: |
0 |
Alignment:
DDBHGGTTGGCATVBD
---AGSCWGG------
Original motif |
Reverse complement motif |
Consensus sequence: DBBATGCCAACCHVHH |
Consensus sequence: DDBHGGTTGGCATVBD |
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Motif ID: |
UP00070 |
Motif name: |
Gcm1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
7 |
Similarity score: |
0.00560414 |
Alignment:
DHDVATGCGGGTHVVH
----AGSCWGG-----
Original motif |
Reverse complement motif |
Consensus sequence: HVVHACCCGCATVDHD |
Consensus sequence: DHDVATGCGGGTHVVH |
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Motif ID: |
UP00095 |
Motif name: |
Zfp691_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
7 |
Similarity score: |
0.0109149 |
Alignment:
VHBDDAGGAGTCWBBTD
--------AGSCWGG--
Original motif |
Reverse complement motif |
Consensus sequence: DABBWGACTCCTHDVHV |
Consensus sequence: VHBDDAGGAGTCWBBTD |
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Motif ID: |
UP00006 |
Motif name: |
Zic3_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
7 |
Similarity score: |
0.0109242 |
Alignment:
DVHCYTGCTGTGHDH
--CCWGSCT------
Original motif |
Reverse complement motif |
Consensus sequence: DDDCACAGCAKGHVD |
Consensus sequence: DVHCYTGCTGTGHDH |
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Motif ID: |
UP00000 |
Motif name: |
Smad3_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
7 |
Similarity score: |
0.0114503 |
Alignment:
HDHDDCCAGACABBHVH
-----CCWGSCT-----
Original motif |
Reverse complement motif |
Consensus sequence: HDHDDCCAGACABBHVH |
Consensus sequence: HVHBVTGTCTGGDDHDD |
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Motif ID: |
UP00539 |
Motif name: |
Gli2_v015681_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
7 |
Similarity score: |
0.0115258 |
Alignment:
CBDMCMGGGTGGTCCHVBVBAH
-----AGSCWGG----------
Original motif |
Reverse complement motif |
Consensus sequence: HTBVVVDGGACCACCCRGRDBG |
Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH |
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Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
8 |
Number of overlap: |
7 |
Similarity score: |
0.0117486 |
Alignment:
HGDHVHKGACCACCCGGBGBGDB
---------CCWGSCT-------
Original motif |
Reverse complement motif |
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH |
Consensus sequence: HGDHVHKGACCACCCGGBGBGDB |
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Motif ID: |
UP00540 |
Motif name: |
Gli3_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
7 |
Similarity score: |
0.0131676 |
Alignment:
CVHBSCGGGTGGTCMHVHHCDH
-----AGSCWGG----------
Original motif |
Reverse complement motif |
Consensus sequence: HDGHHBHRGACCACCCGSVDVG |
Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH |
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Motif ID: |
UP00081 |
Motif name: |
Mybl1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
7 |
Number of overlap: |
7 |
Similarity score: |
0.0136026 |
Alignment:
BHCGGCAGTTGGBBB
--AGSCWGG------
Original motif |
Reverse complement motif |
Consensus sequence: BBVCCAACTGCCGHB |
Consensus sequence: BHCGGCAGTTGGBBB |
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Motif ID: |
UP00057 |
Motif name: |
Zic2_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
7 |
Number of overlap: |
7 |
Similarity score: |
0.0139558 |
Alignment:
DVBCYTGCTGBGDDD
--CCWGSCT------
Original motif |
Reverse complement motif |
Consensus sequence: HHDCVCAGCAKGVVD |
Consensus sequence: DVBCYTGCTGBGDDD |
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Dataset #: 1 |
Motif ID: 4 |
Motif name: Motif 4 |
Original motif |
Reverse complement motif |
Consensus sequence: CTCTGY |
Consensus sequence: KCAGAG |
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Best Matches for Motif ID 4 (Highest to Lowest)
Motif ID: |
UP00031 |
Motif name: |
Zbtb3_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
7 |
Number of overlap: |
6 |
Similarity score: |
0 |
Alignment:
BBBAVTGCAGTGBBVDD
------KCAGAG-----
Original motif |
Reverse complement motif |
Consensus sequence: DDBBBCACTGCABTBBB |
Consensus sequence: BBBAVTGCAGTGBBVDD |
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Motif ID: |
UP00018 |
Motif name: |
Irf4_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
7 |
Number of overlap: |
6 |
Similarity score: |
0.00610915 |
Alignment:
BHHWCCGAGAMTVVB
---KCAGAG------
Original motif |
Reverse complement motif |
Consensus sequence: VVBAYTCTCGGWHDB |
Consensus sequence: BHHWCCGAGAMTVVB |
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Motif ID: |
UP00095 |
Motif name: |
Zfp691_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
6 |
Similarity score: |
0.00648219 |
Alignment:
VHBDDAGGAGTCWBBTD
----KCAGAG-------
Original motif |
Reverse complement motif |
Consensus sequence: DABBWGACTCCTHDVHV |
Consensus sequence: VHBDDAGGAGTCWBBTD |
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Motif ID: |
UP00006 |
Motif name: |
Zic3_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
8 |
Number of overlap: |
6 |
Similarity score: |
0.00853125 |
Alignment:
DDDCACAGCAKGHVD
--KCAGAG-------
Original motif |
Reverse complement motif |
Consensus sequence: DDDCACAGCAKGHVD |
Consensus sequence: DVHCYTGCTGTGHDH |
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Motif ID: |
UP00007 |
Motif name: |
Egr1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
6 |
Similarity score: |
0.00895004 |
Alignment:
BHHDTCCCACTCBDBV
---------CTCTGY-
Original motif |
Reverse complement motif |
Consensus sequence: BBHBGAGTGGGAHHDB |
Consensus sequence: BHHDTCCCACTCBDBV |
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Motif ID: |
UP00095 |
Motif name: |
Zfp691_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
6 |
Similarity score: |
0.00955889 |
Alignment:
DDHBYGAGCACTGBHHB
--------CTCTGY---
Original motif |
Reverse complement motif |
Consensus sequence: BDHVCAGTGCTCMBHDD |
Consensus sequence: DDHBYGAGCACTGBHHB |
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Motif ID: |
UP00067 |
Motif name: |
Lef1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
6 |
Similarity score: |
0.0106184 |
Alignment:
VDDAGATCAAAGGKDDD
------KCAGAG-----
Original motif |
Reverse complement motif |
Consensus sequence: DDDYCCTTTGATCTDDV |
Consensus sequence: VDDAGATCAAAGGKDDD |
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Motif ID: |
UP00102 |
Motif name: |
Zic1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
8 |
Number of overlap: |
6 |
Similarity score: |
0.0122635 |
Alignment:
BHDCVCAGCAGGHVD
--KCAGAG-------
Original motif |
Reverse complement motif |
Consensus sequence: BHDCVCAGCAGGHVD |
Consensus sequence: DVHCCTGCTGBGDDB |
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Motif ID: |
UP00083 |
Motif name: |
Tcf7l2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
6 |
Similarity score: |
0.0131237 |
Alignment:
BDDASATCAAAGGMDDD
------KCAGAG-----
Original motif |
Reverse complement motif |
Consensus sequence: DDDYCCTTTGATSTDDV |
Consensus sequence: BDDASATCAAAGGMDDD |
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Motif ID: |
UP00057 |
Motif name: |
Zic2_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
6 |
Similarity score: |
0.0136526 |
Alignment:
HHDCVCAGCAKGVVD
--KCAGAG-------
Original motif |
Reverse complement motif |
Consensus sequence: HHDCVCAGCAKGVVD |
Consensus sequence: DVBCYTGCTGBGDDD |
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Dataset #: 1 |
Motif ID: 5 |
Motif name: Motif 5 |
Original motif |
Reverse complement motif |
Consensus sequence: ATKTM |
Consensus sequence: RARAT |
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Best Matches for Motif ID 5 (Highest to Lowest)
Motif ID: |
UP00080 |
Motif name: |
Gata5_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
9 |
Number of overlap: |
5 |
Similarity score: |
0 |
Alignment:
VVBHRAGATATCWDHBB
----RARAT--------
Original motif |
Reverse complement motif |
Consensus sequence: VVBHRAGATATCWDHBB |
Consensus sequence: VVHHWGATATCTMHBBV |
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Motif ID: |
UP00148 |
Motif name: |
Hdx |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
8 |
Number of overlap: |
5 |
Similarity score: |
0.00279496 |
Alignment:
DDKDHGAAATCAHHBHV
-----RARAT-------
Original motif |
Reverse complement motif |
Consensus sequence: DDKDHGAAATCAHHBHV |
Consensus sequence: BDBDHTGATTTCDHYDD |
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Motif ID: |
UP00032 |
Motif name: |
Gata3_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
12 |
Number of overlap: |
5 |
Similarity score: |
0.00967655 |
Alignment:
BDHDDADAGATAAGADHBDHVD
------RARAT-----------
Original motif |
Reverse complement motif |
Consensus sequence: BDHDDADAGATAAGADHBDHVD |
Consensus sequence: HBHDVHDTCTTATCTHTDDHDV |
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Motif ID: |
UP00250 |
Motif name: |
Irx5 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
5 |
Similarity score: |
0.0116566 |
Alignment:
DDDHWACATGTWHDABW
-------ATKTM-----
Original motif |
Reverse complement motif |
Consensus sequence: DDDHWACATGTWHDABW |
Consensus sequence: WVTDHWACATGTWHDDD |
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Motif ID: |
UP00236 |
Motif name: |
Irx2 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
5 |
Similarity score: |
0.0120196 |
Alignment:
WDDDTACATGTADDWBW
-------ATKTM-----
Original motif |
Reverse complement motif |
Consensus sequence: WDDDTACATGTADDWBW |
Consensus sequence: WVWDDTACATGTADDDW |
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Motif ID: |
UP00150 |
Motif name: |
Irx6 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
8 |
Number of overlap: |
5 |
Similarity score: |
0.0120601 |
Alignment:
HAHDTACATGTAVDWHT
-------ATKTM-----
Original motif |
Reverse complement motif |
Consensus sequence: HAHDTACATGTAVDWHT |
Consensus sequence: AHWDBTACATGTADHTH |
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Motif ID: |
UP00223 |
Motif name: |
Irx3_2226.1 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
8 |
Number of overlap: |
5 |
Similarity score: |
0.0124884 |
Alignment:
DDDHTACATGTAVWDHD
-------ATKTM-----
Original motif |
Reverse complement motif |
Consensus sequence: DDDHTACATGTAVWDHD |
Consensus sequence: DHDWBTACATGTAHDDD |
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Motif ID: |
UP00033 |
Motif name: |
Zfp410_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
10 |
Number of overlap: |
5 |
Similarity score: |
0.0150044 |
Alignment:
DVDDATGGGATGKMDDV
---------ATKTM---
Original motif |
Reverse complement motif |
Consensus sequence: DVDDATGGGATGKMDDV |
Consensus sequence: BDDYYCATCCCATDDBD |
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Motif ID: |
UP00223 |
Motif name: |
Irx3_0920.1 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
5 |
Similarity score: |
0.0150192 |
Alignment:
DDDDTACATGTAVWWHD
-------ATKTM-----
Original motif |
Reverse complement motif |
Consensus sequence: DDDDTACATGTAVWWHD |
Consensus sequence: DDWWBTACATGTADDDD |
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Motif ID: |
UP00528 |
Motif name: |
Foxm1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
12 |
Number of overlap: |
5 |
Similarity score: |
0.0166075 |
Alignment:
MWSMBAARRATGCDCABHATGD
------RARAT-----------
Original motif |
Reverse complement motif |
Consensus sequence: MWSMBAARRATGCDCABHATGD |
Consensus sequence: DCATDBTGHGCATKMTTBRSWR |
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Dataset #: 1 |
Motif ID: 6 |
Motif name: Motif 6 |
Original motif |
Reverse complement motif |
Consensus sequence: CMGCRGC |
Consensus sequence: GCKGCYG |
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Best Matches for Motif ID 6 (Highest to Lowest)
Motif ID: |
UP00052 |
Motif name: |
Osr2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
7 |
Similarity score: |
0 |
Alignment:
HHHHGCTACKGTHVHH
----GCKGCYG-----
Original motif |
Reverse complement motif |
Consensus sequence: HHVHACRGTAGCHHHD |
Consensus sequence: HHHHGCTACKGTHVHH |
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Motif ID: |
UP00027 |
Motif name: |
Osr1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
7 |
Similarity score: |
0.00108105 |
Alignment:
DHBHGCTACKGTHDHH
----GCKGCYG-----
Original motif |
Reverse complement motif |
Consensus sequence: HHDHACRGTAGCHVHD |
Consensus sequence: DHBHGCTACKGTHDHH |
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Motif ID: |
UP00099 |
Motif name: |
Ascl2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
8 |
Number of overlap: |
7 |
Similarity score: |
0.00905497 |
Alignment:
BBYVVCAGCTGCBVHHD
-------GCKGCYG---
Original motif |
Reverse complement motif |
Consensus sequence: BBYVVCAGCTGCBVHHD |
Consensus sequence: HHDVVGCAGCTGVBKVB |
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Motif ID: |
UP00102 |
Motif name: |
Zic1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
7 |
Similarity score: |
0.0111061 |
Alignment:
BHDCVCAGCAGGHVD
-----CMGCRGC---
Original motif |
Reverse complement motif |
Consensus sequence: BHDCVCAGCAGGHVD |
Consensus sequence: DVHCCTGCTGBGDDB |
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Motif ID: |
UP00057 |
Motif name: |
Zic2_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
7 |
Similarity score: |
0.0126897 |
Alignment:
HHDCVCAGCAKGVVD
-----CMGCRGC---
Original motif |
Reverse complement motif |
Consensus sequence: HHDCVCAGCAKGVVD |
Consensus sequence: DVBCYTGCTGBGDDD |
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Motif ID: |
UP00006 |
Motif name: |
Zic3_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
7 |
Similarity score: |
0.0137402 |
Alignment:
DVHCYTGCTGTGHDH
---GCKGCYG-----
Original motif |
Reverse complement motif |
Consensus sequence: DDDCACAGCAKGHVD |
Consensus sequence: DVHCYTGCTGTGHDH |
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Motif ID: |
UP00045 |
Motif name: |
Mafb_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
7 |
Similarity score: |
0.0253076 |
Alignment:
DMTWDGTCAGCADWTTH
-------CMGCRGC---
Original motif |
Reverse complement motif |
Consensus sequence: HAAWDTGCTGACDWARH |
Consensus sequence: DMTWDGTCAGCADWTTH |
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Motif ID: |
UP00193 |
Motif name: |
Rhox11_1765.2 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
7 |
Similarity score: |
0.0292668 |
Alignment:
WVVHWTWACAGCGBHBT
--------CMGCRGC--
Original motif |
Reverse complement motif |
Consensus sequence: AVDVCGCTGTWAWDVVW |
Consensus sequence: WVVHWTWACAGCGBHBT |
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Motif ID: |
UP00193 |
Motif name: |
Rhox11_2205.1 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
7 |
Similarity score: |
0.0298083 |
Alignment:
WVVHWTWACAGCGHHVT
--------CMGCRGC--
Original motif |
Reverse complement motif |
Consensus sequence: AVDHCGCTGTWAWDVVW |
Consensus sequence: WVVHWTWACAGCGHHVT |
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Motif ID: |
UP00122 |
Motif name: |
Tgif1 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
7 |
Similarity score: |
0.0332976 |
Alignment:
DABWWTGACAGCTVVBD
--------CMGCRGC--
Original motif |
Reverse complement motif |
Consensus sequence: DABWWTGACAGCTVVBD |
Consensus sequence: DBVVAGCTGTCAWWVTH |
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Dataset #: 1 |
Motif ID: 7 |
Motif name: Motif 7 |
Original motif |
Reverse complement motif |
Consensus sequence: CCCRCCCC |
Consensus sequence: GGGGMGGG |
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Best Matches for Motif ID 7 (Highest to Lowest)
Motif ID: |
UP00093 |
Motif name: |
Klf7_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
8 |
Similarity score: |
0 |
Alignment:
DHHDGGGCGRGGKHBH
---GGGGMGGG-----
Original motif |
Reverse complement motif |
Consensus sequence: HBDRCCMCGCCCHHHD |
Consensus sequence: DHHDGGGCGRGGKHBH |
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Motif ID: |
UP00002 |
Motif name: |
Sp4_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
7 |
Number of overlap: |
8 |
Similarity score: |
0.00490878 |
Alignment:
BVVHAGGGGGCGRDHHB
------GGGGMGGG---
Original motif |
Reverse complement motif |
Consensus sequence: BDHHMCGCCCCCTHVBB |
Consensus sequence: BVVHAGGGGGCGRDHHB |
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Motif ID: |
UP00007 |
Motif name: |
Egr1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
8 |
Similarity score: |
0.0101441 |
Alignment:
HCCGCCCCCGCAHB
CCCRCCCC------
Original motif |
Reverse complement motif |
Consensus sequence: HCCGCCCCCGCAHB |
Consensus sequence: VHTGCGGGGGCGGH |
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Motif ID: |
UP00021 |
Motif name: |
Zfp281_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
8 |
Similarity score: |
0.0106908 |
Alignment:
DBCCCCCCCCCCMYC
---CCCRCCCC----
Original motif |
Reverse complement motif |
Consensus sequence: DBCCCCCCCCCCMYC |
Consensus sequence: GKRGGGGGGGGGGBD |
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Motif ID: |
UP00043 |
Motif name: |
Bcl6b_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
8 |
Similarity score: |
0.0152681 |
Alignment:
HBBBCCGCCCCWHHHV
---CCCRCCCC-----
Original motif |
Reverse complement motif |
Consensus sequence: HBBBCCGCCCCWHHHV |
Consensus sequence: BHHHWGGGGCGGBBVH |
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Motif ID: |
UP00538 |
Motif name: |
Gli1_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
8 |
Similarity score: |
0.0252184 |
Alignment:
MHHHWHYTMCCHCCCACVAABVH
--------CCCRCCCC-------
Original motif |
Reverse complement motif |
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH |
Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY |
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|
|
Motif ID: |
UP00022 |
Motif name: |
Zfp740_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
7 |
Number of overlap: |
8 |
Similarity score: |
0.0258528 |
Alignment:
HVBCCCCCCCCMHHHB
--CCCRCCCC------
Original motif |
Reverse complement motif |
Consensus sequence: HVBCCCCCCCCMHHHB |
Consensus sequence: BHHDYGGGGGGGGBVD |
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|
|
Motif ID: |
UP00007 |
Motif name: |
Egr1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
8 |
Similarity score: |
0.0318239 |
Alignment:
BHHDTCCCACTCBDBV
-----CCCRCCCC---
Original motif |
Reverse complement motif |
Consensus sequence: BBHBGAGTGGGAHHDB |
Consensus sequence: BHHDTCCCACTCBDBV |
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|
|
Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
8 |
Number of overlap: |
8 |
Similarity score: |
0.0333599 |
Alignment:
HGDHVHKGACCACCCGGBGBGDB
--------CCCRCCCC-------
Original motif |
Reverse complement motif |
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH |
Consensus sequence: HGDHVHKGACCACCCGGBGBGDB |
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|
|
|
Motif ID: |
UP00033 |
Motif name: |
Zfp410_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
8 |
Similarity score: |
0.0336185 |
Alignment:
HHHHDGGGGCGGDBHDV
-----GGGGMGGG----
Original motif |
Reverse complement motif |
Consensus sequence: BHHBHCCGCCCCDHHHH |
Consensus sequence: HHHHDGGGGCGGDBHDV |
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Dataset #: 1 |
Motif ID: 8 |
Motif name: Motif 8 |
Original motif |
Reverse complement motif |
Consensus sequence: CTGGGA |
Consensus sequence: TCCCAG |
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Best Matches for Motif ID 8 (Highest to Lowest)
Motif ID: |
UP00033 |
Motif name: |
Zfp410_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
8 |
Number of overlap: |
6 |
Similarity score: |
0 |
Alignment:
DVDDATGGGATGKMDDV
----CTGGGA-------
Original motif |
Reverse complement motif |
Consensus sequence: DVDDATGGGATGKMDDV |
Consensus sequence: BDDYYCATCCCATDDBD |
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|
|
|
Motif ID: |
UP00216 |
Motif name: |
Obox1 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
6 |
Similarity score: |
0.000600574 |
Alignment:
DHDGTTAATCCCCKTDD
--------TCCCAG---
Original motif |
Reverse complement motif |
Consensus sequence: DDARGGGGATTAACDHH |
Consensus sequence: DHDGTTAATCCCCKTDD |
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|
|
|
Motif ID: |
UP00229 |
Motif name: |
Otx1 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
10 |
Number of overlap: |
6 |
Similarity score: |
0.0140775 |
Alignment:
VHHWATTAATCCCMDHH
---------TCCCAG--
Original motif |
Reverse complement motif |
Consensus sequence: DDDRGGGATTAATWHHB |
Consensus sequence: VHHWATTAATCCCMDHH |
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|
|
|
Motif ID: |
UP00160 |
Motif name: |
Obox3 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
6 |
Similarity score: |
0.0142192 |
Alignment:
HHWGTTAATCCCCCBBH
--------TCCCAG---
Original motif |
Reverse complement motif |
Consensus sequence: HBVGGGGGATTAACWHH |
Consensus sequence: HHWGTTAATCCCCCBBH |
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|
|
|
Motif ID: |
UP00239 |
Motif name: |
Obox2 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
6 |
Similarity score: |
0.0184594 |
Alignment:
HTARTTAATCCCCCKBD
--------TCCCAG---
Original motif |
Reverse complement motif |
Consensus sequence: DBRGGGGGATTAAMTAH |
Consensus sequence: HTARTTAATCCCCCKBD |
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|
|
|
Motif ID: |
UP00416 |
Motif name: |
Fli1 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
7 |
Number of overlap: |
6 |
Similarity score: |
0.018604 |
Alignment:
DHDACCGGAAKTBBVV
----CTGGGA------
Original motif |
Reverse complement motif |
Consensus sequence: VBBVAYTTCCGGTDDH |
Consensus sequence: DHDACCGGAAKTBBVV |
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|
|
|
Motif ID: |
UP00411 |
Motif name: |
Erg |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
7 |
Number of overlap: |
6 |
Similarity score: |
0.0196433 |
Alignment:
BDDACCGGAAKTVBVB
----CTGGGA------
Original motif |
Reverse complement motif |
Consensus sequence: VBBVAYTTCCGGTDDB |
Consensus sequence: BDDACCGGAAKTVBVB |
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|
|
|
Motif ID: |
UP00413 |
Motif name: |
Elf4 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
6 |
Similarity score: |
0.0196806 |
Alignment:
HAWYCCGGAAGTHBBD
----CTGGGA------
Original motif |
Reverse complement motif |
Consensus sequence: DBBHACTTCCGGKWTH |
Consensus sequence: HAWYCCGGAAGTHBBD |
|
|
|
|
Motif ID: |
UP00143 |
Motif name: |
Dobox5 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
10 |
Number of overlap: |
6 |
Similarity score: |
0.0199632 |
Alignment:
DDHVGGGATTAATHDTH
--CTGGGA---------
Original motif |
Reverse complement motif |
Consensus sequence: DDHVGGGATTAATHDTH |
Consensus sequence: DADHATTAATCCCBHHH |
|
|
|
|
Motif ID: |
UP00265 |
Motif name: |
Pitx3 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
10 |
Number of overlap: |
6 |
Similarity score: |
0.0210625 |
Alignment:
GBHDGCTAATCCCCCB
---------TCCCAG-
Original motif |
Reverse complement motif |
Consensus sequence: VGGGGGATTAGCDDBC |
Consensus sequence: GBHDGCTAATCCCCCB |
|
|
|
|
Dataset #: 1 |
Motif ID: 9 |
Motif name: Motif 9 |
Original motif |
Reverse complement motif |
Consensus sequence: CACACAVRCACACA |
Consensus sequence: TGTGTGKVTGTGTG |
|
|
|
|
Best Matches for Motif ID 9 (Highest to Lowest)
Motif ID: |
UP00540 |
Motif name: |
Gli3_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
9 |
Number of overlap: |
14 |
Similarity score: |
0.0487588 |
Alignment:
VYWVVHCRCCACMCACGAHSBHH
-CACACAVRCACACA--------
Original motif |
Reverse complement motif |
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH |
Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV |
|
|
|
|
Motif ID: |
UP00042 |
Motif name: |
Gm397_second |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
14 |
Similarity score: |
0.0496974 |
Alignment:
HBGYGTGTGTGCVRVD
-TGTGTGKVTGTGTG-
Original motif |
Reverse complement motif |
Consensus sequence: DVMVGCACACACKCVH |
Consensus sequence: HBGYGTGTGTGCVRVD |
|
|
|
|
Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
10 |
Number of overlap: |
14 |
Similarity score: |
0.0503392 |
Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
TGTGTGKVTGTGTG---------
Original motif |
Reverse complement motif |
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB |
Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH |
|
|
|
|
Motif ID: |
UP00025 |
Motif name: |
Foxk1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0506792 |
Alignment:
HDDTGTTKTTKTHHD
-TGTGTGKVTGTGTG
Original motif |
Reverse complement motif |
Consensus sequence: HHHAYAAYAACAHHH |
Consensus sequence: HDDTGTTKTTKTHHD |
|
|
|
|
Motif ID: |
UP00036 |
Motif name: |
Myf6_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
14 |
Similarity score: |
0.0516113 |
Alignment:
VVVRACAGVCBCDCC
-CACACAVRCACACA
Original motif |
Reverse complement motif |
Consensus sequence: VVVRACAGVCBCDCC |
Consensus sequence: GGDGBGVCTGTKVVB |
|
|
|
|
Motif ID: |
UP00034 |
Motif name: |
Sox7_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0523703 |
Alignment:
VVYDDDCHCAVACAATTDBVAC
CACACAVRCACACA--------
Original motif |
Reverse complement motif |
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB |
Consensus sequence: VVYDDDCHCAVACAATTDBVAC |
|
|
|
|
Motif ID: |
UP00026 |
Motif name: |
Zscan4_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0557355 |
Alignment:
DHVDTGTGCACAYAHDH
CACACAVRCACACA---
Original motif |
Reverse complement motif |
Consensus sequence: DHVDTGTGCACAYAHDH |
Consensus sequence: HDHTMTGTGCACADVHD |
|
|
|
|
Motif ID: |
UP00526 |
Motif name: |
Foxn1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
14 |
Similarity score: |
0.0578572 |
Alignment:
DDRMHBACGCGYGCGTDGBBDB
-CACACAVRCACACA-------
Original motif |
Reverse complement motif |
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB |
Consensus sequence: BDVBCDACGCKCGCGTBHRKHD |
|
|
|
|
Motif ID: |
UP00400 |
Motif name: |
Zif268 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
14 |
Similarity score: |
0.0580046 |
Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
------TGTGTGKVTGTGTG---
Original motif |
Reverse complement motif |
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV |
Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB |
|
|
|
|
Motif ID: |
UP00014 |
Motif name: |
Sox17_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
14 |
Similarity score: |
0.0581238 |
Alignment:
DDBDKATGAATGHDBHV
--TGTGTGKVTGTGTG-
Original motif |
Reverse complement motif |
Consensus sequence: VHBHHCATTCATRHVDD |
Consensus sequence: DDBDKATGAATGHDBHV |
|
|
|
|
Dataset #: 1 |
Motif ID: 10 |
Motif name: Motif 10 |
Original motif |
Reverse complement motif |
Consensus sequence: TKKTTTGTTTTTTT |
Consensus sequence: AAAAAAACAAARRA |
|
|
|
|
Best Matches for Motif ID 10 (Highest to Lowest)
Motif ID: |
UP00061 |
Motif name: |
Foxl1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
14 |
Similarity score: |
0.0319341 |
Alignment:
HDTYTTGTTWTKDDDT
TKKTTTGTTTTTTT--
Original motif |
Reverse complement motif |
Consensus sequence: ADDDYAWAACAAMAHH |
Consensus sequence: HDTYTTGTTWTKDDDT |
|
|
|
|
Motif ID: |
UP00062 |
Motif name: |
Sox4_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
14 |
Similarity score: |
0.0368361 |
Alignment:
HBDDDAACAAAGRVBHH
AAAAAAACAAARRA---
Original motif |
Reverse complement motif |
Consensus sequence: HBDDDAACAAAGRVBHH |
Consensus sequence: HHBBMCTTTGTTHDDBH |
|
|
|
|
Motif ID: |
UP00030 |
Motif name: |
Sox11_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0370295 |
Alignment:
HBDDRAACAAAGRABHH
AAAAAAACAAARRA---
Original motif |
Reverse complement motif |
Consensus sequence: HBDDRAACAAAGRABHH |
Consensus sequence: HHBTMCTTTGTTMDDVH |
|
|
|
|
Motif ID: |
UP00077 |
Motif name: |
Srf_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
14 |
Similarity score: |
0.038882 |
Alignment:
HHVBYTTTTTTTTDDVV
-TKKTTTGTTTTTTT--
Original motif |
Reverse complement motif |
Consensus sequence: VBDDAAAAAAAAMVBHH |
Consensus sequence: HHVBYTTTTTTTTDDVV |
|
|
|
|
Motif ID: |
UP00101 |
Motif name: |
Sox12_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0402601 |
Alignment:
HDTMCTTTGTSTVDBB
AAAAAAACAAARRA--
Original motif |
Reverse complement motif |
Consensus sequence: VVDBASACAAAGRADH |
Consensus sequence: HDTMCTTTGTSTVDBB |
|
|
|
|
Motif ID: |
UP00073 |
Motif name: |
Foxa2_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
14 |
Similarity score: |
0.0402844 |
Alignment:
VVDAATAACAAAVVB
-AAAAAAACAAARRA
Original motif |
Reverse complement motif |
Consensus sequence: VVDAATAACAAAVVB |
Consensus sequence: BVVTTTGTTATTDBB |
|
|
|
|
Motif ID: |
UP00034 |
Motif name: |
Sox7_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
7 |
Number of overlap: |
14 |
Similarity score: |
0.0409353 |
Alignment:
HHBDHDDAACAATDRHHHHHBW
--AAAAAAACAAARRA------
Original motif |
Reverse complement motif |
Consensus sequence: HHBDHDDAACAATDRHHHHHBW |
Consensus sequence: WBHHHHHMDATTGTTHDHDVHH |
|
|
|
|
Motif ID: |
UP00025 |
Motif name: |
Foxk1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0416172 |
Alignment:
HHHAYAAYAACAHHH
-TKKTTTGTTTTTTT
Original motif |
Reverse complement motif |
Consensus sequence: HHHAYAAYAACAHHH |
Consensus sequence: HDDTGTTKTTKTHHD |
|
|
|
|
Motif ID: |
UP00039 |
Motif name: |
Foxj3_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0419017 |
Alignment:
HDHADGTAAACAAAVVH
---AAAAAAACAAARRA
Original motif |
Reverse complement motif |
Consensus sequence: HDHADGTAAACAAAVVH |
Consensus sequence: DVVTTTGTTTACDTHDH |
|
|
|
|
Motif ID: |
UP00073 |
Motif name: |
Foxa2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0439168 |
Alignment:
HHWAWGTAAAYAAAVDB
---AAAAAAACAAARRA
Original motif |
Reverse complement motif |
Consensus sequence: HHWAWGTAAAYAAAVDB |
Consensus sequence: BDVTTTKTTTACWTWHH |
|
|
|
|
Dataset #: 1 |
Motif ID: 11 |
Motif name: Motif 11 |
Original motif |
Reverse complement motif |
Consensus sequence: CAYACACACACACA |
Consensus sequence: TGTGTGTGTGTKTG |
|
|
|
|
Best Matches for Motif ID 11 (Highest to Lowest)
Motif ID: |
UP00042 |
Motif name: |
Gm397_second |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
14 |
Similarity score: |
0.0235042 |
Alignment:
DVMVGCACACACKCVH
-CAYACACACACACA-
Original motif |
Reverse complement motif |
Consensus sequence: DVMVGCACACACKCVH |
Consensus sequence: HBGYGTGTGTGCVRVD |
|
|
|
|
Motif ID: |
UP00026 |
Motif name: |
Zscan4_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
14 |
Similarity score: |
0.0372612 |
Alignment:
BHHHTTGTGTGCKHVD
-TGTGTGTGTGTKTG-
Original motif |
Reverse complement motif |
Consensus sequence: HVHRGCACACAAHHHV |
Consensus sequence: BHHHTTGTGTGCKHVD |
|
|
|
|
Motif ID: |
UP00000 |
Motif name: |
Smad3_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
14 |
Similarity score: |
0.0446373 |
Alignment:
HVHBVTGTCTGGDDHDD
---TGTGTGTGTGTKTG
Original motif |
Reverse complement motif |
Consensus sequence: HDHDDCCAGACABBHVH |
Consensus sequence: HVHBVTGTCTGGDDHDD |
|
|
|
|
Motif ID: |
UP00400 |
Motif name: |
Zif268 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
14 |
Similarity score: |
0.0457169 |
Alignment:
BADHBDHCGCCCMCGCAHHDBBV
---CAYACACACACACA------
Original motif |
Reverse complement motif |
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV |
Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB |
|
|
|
|
Motif ID: |
UP00034 |
Motif name: |
Sox7_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0477221 |
Alignment:
GTVBDAATTGTVTGHGDDHKVB
CAYACACACACACA--------
Original motif |
Reverse complement motif |
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB |
Consensus sequence: VVYDDDCHCAVACAATTDBVAC |
|
|
|
|
Motif ID: |
UP00025 |
Motif name: |
Foxk1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0485483 |
Alignment:
HDDTGTTKTTKTHHD
-TGTGTGTGTGTKTG
Original motif |
Reverse complement motif |
Consensus sequence: HHHAYAAYAACAHHH |
Consensus sequence: HDDTGTTKTTKTHHD |
|
|
|
|
Motif ID: |
UP00041 |
Motif name: |
Foxj1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
14 |
Similarity score: |
0.0488633 |
Alignment:
HDHRTAAACAAAHDDD
CAYACACACACACA--
Original motif |
Reverse complement motif |
Consensus sequence: HDHRTAAACAAAHDDD |
Consensus sequence: DDDHTTTGTTTAMHDH |
|
|
|
|
Motif ID: |
UP00026 |
Motif name: |
Zscan4_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
14 |
Similarity score: |
0.0489596 |
Alignment:
DHVDTGTGCACAYAHDH
--CAYACACACACACA-
Original motif |
Reverse complement motif |
Consensus sequence: DHVDTGTGCACAYAHDH |
Consensus sequence: HDHTMTGTGCACADVHD |
|
|
|
|
Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
10 |
Number of overlap: |
14 |
Similarity score: |
0.0501133 |
Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
TGTGTGTGTGTKTG---------
Original motif |
Reverse complement motif |
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB |
Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH |
|
|
|
|
Motif ID: |
UP00025 |
Motif name: |
Foxk1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
14 |
Similarity score: |
0.0518949 |
Alignment:
DDAATGTAAACAAAVVB
--CAYACACACACACA-
Original motif |
Reverse complement motif |
Consensus sequence: DDAATGTAAACAAAVVB |
Consensus sequence: BBVTTTGTTTACATTDD |
|
|
|
|
Dataset #: 2 |
Motif ID: 12 |
Motif name: Zfx |
Original motif |
Reverse complement motif |
Consensus sequence: BBVGCCBVGGCCTV |
Consensus sequence: VAGGCCBBGGCVBB |
|
|
|
|
Best Matches for Motif ID 12 (Highest to Lowest)
Motif ID: |
UP00005 |
Motif name: |
Tcfap2a_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0596136 |
Alignment:
HHRCCBBWGGDCDB
BBVGCCBVGGCCTV
Original motif |
Reverse complement motif |
Consensus sequence: HHRCCBBWGGDCDB |
Consensus sequence: BDGHCCWBVGGKDH |
|
|
|
|
Motif ID: |
UP00540 |
Motif name: |
Gli3_v015681_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0603516 |
Alignment:
ABBBBVVRGACCACCCACRDBBM
BBVGCCBVGGCCTV---------
Original motif |
Reverse complement motif |
Consensus sequence: ABBBBVVRGACCACCCACRDBBM |
Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT |
|
|
|
|
Motif ID: |
UP00002 |
Motif name: |
Sp4_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
14 |
Similarity score: |
0.0604694 |
Alignment:
BDHHMCGCCCCCTHVBB
---VAGGCCBBGGCVBB
Original motif |
Reverse complement motif |
Consensus sequence: BDHHMCGCCCCCTHVBB |
Consensus sequence: BVVHAGGGGGCGRDHHB |
|
|
|
|
Motif ID: |
UP00093 |
Motif name: |
Klf7_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
14 |
Similarity score: |
0.0606067 |
Alignment:
HBDRCCMCGCCCHHHD
BBVGCCBVGGCCTV--
Original motif |
Reverse complement motif |
Consensus sequence: HBDRCCMCGCCCHHHD |
Consensus sequence: DHHDGGGCGRGGKHBH |
|
|
|
|
Motif ID: |
UP00539 |
Motif name: |
Gli2_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
14 |
Similarity score: |
0.0606878 |
Alignment:
HVGVSAGGAGGGTCYHHHHYVH
--------VAGGCCBBGGCVBB
Original motif |
Reverse complement motif |
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH |
Consensus sequence: DVMHHDHKGACCCTCCTSVCBH |
|
|
|
|
Motif ID: |
UP00087 |
Motif name: |
Tcfap2c_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0608063 |
Alignment:
HWGCCCTDGGGCDB
VAGGCCBBGGCVBB
Original motif |
Reverse complement motif |
Consensus sequence: BHGCCCDAGGGCWD |
Consensus sequence: HWGCCCTDGGGCDB |
|
|
|
|
Motif ID: |
UP00540 |
Motif name: |
Gli3_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
14 |
Similarity score: |
0.0615001 |
Alignment:
DVTTVVCVYGGHGGYCHHDMYB
----BBVGCCBVGGCCTV----
Original motif |
Reverse complement motif |
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB |
Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH |
|
|
|
|
Motif ID: |
UP00010 |
Motif name: |
Tcfap2b_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
14 |
Similarity score: |
0.0624288 |
Alignment:
HHKGCCYSRGGCWAD
-BBVGCCBVGGCCTV
Original motif |
Reverse complement motif |
Consensus sequence: DTWGCCKSMGGCRHH |
Consensus sequence: HHKGCCYSRGGCWAD |
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Motif ID: |
UP00082 |
Motif name: |
Zfp187_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0627664 |
Alignment:
DDGMCCTBGTCCHYHV
VAGGCCBBGGCVBB--
Original motif |
Reverse complement motif |
Consensus sequence: DDGMCCTBGTCCHYHV |
Consensus sequence: VHMDGGACVAGGRCDH |
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Motif ID: |
UP00009 |
Motif name: |
Nr2f2_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
14 |
Similarity score: |
0.0636529 |
Alignment:
HVBVTGACCCSGBVBV
--VAGGCCBBGGCVBB
Original motif |
Reverse complement motif |
Consensus sequence: VBVBCSGGGTCAVBBH |
Consensus sequence: HVBVTGACCCSGBVBV |
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Dataset #: 2 |
Motif ID: 13 |
Motif name: Zfp423 |
Original motif |
Reverse complement motif |
Consensus sequence: GSMMCCYARGGKKKC |
Consensus sequence: GYRYCCMTKGGYRSC |
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Best Matches for Motif ID 13 (Highest to Lowest)
Motif ID: |
UP00057 |
Motif name: |
Zic2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
15 |
Similarity score: |
0.0178077 |
Alignment:
BMCCCCCGGGGGGGB
GSMMCCYARGGKKKC
Original motif |
Reverse complement motif |
Consensus sequence: BMCCCCCGGGGGGGB |
Consensus sequence: VCCCCCCCGGGGGRB |
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Motif ID: |
UP00006 |
Motif name: |
Zic3_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
15 |
Similarity score: |
0.0213948 |
Alignment:
BMCCCCCGGGGGGGB
GSMMCCYARGGKKKC
Original motif |
Reverse complement motif |
Consensus sequence: BMCCCCCGGGGGGGB |
Consensus sequence: VCCCCCCCGGGGGRB |
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Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
15 |
Similarity score: |
0.0255241 |
Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-------GSMMCCYARGGKKKC-
Original motif |
Reverse complement motif |
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB |
Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH |
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Motif ID: |
UP00087 |
Motif name: |
Tcfap2c_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
15 |
Similarity score: |
0.0261399 |
Alignment:
WHHSCCYSRGGSDAD
GSMMCCYARGGKKKC
Original motif |
Reverse complement motif |
Consensus sequence: WHHSCCYSRGGSDAD |
Consensus sequence: DTHSCCKSMGGSHHW |
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Motif ID: |
UP00005 |
Motif name: |
Tcfap2a_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
15 |
Similarity score: |
0.0266201 |
Alignment:
WDHSCCYSRGGSRAD
GSMMCCYARGGKKKC
Original motif |
Reverse complement motif |
Consensus sequence: WDHSCCYSRGGSRAD |
Consensus sequence: DTMSCCKSMGGSHDW |
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Motif ID: |
UP00539 |
Motif name: |
Gli2_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
8 |
Number of overlap: |
15 |
Similarity score: |
0.027503 |
Alignment:
RTHBSYCGCCMCMYVCGBTVDH
-------GSMMCCYARGGKKKC
Original motif |
Reverse complement motif |
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH |
Consensus sequence: HDBABCGBKRGYGGCGMSBHAK |
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Motif ID: |
UP00220 |
Motif name: |
Nkx1-1 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
15 |
Similarity score: |
0.0276935 |
Alignment:
WGHRCYAATTRGYGSDV
-GYRYCCMTKGGYRSC-
Original motif |
Reverse complement motif |
Consensus sequence: WGHRCYAATTRGYGSDV |
Consensus sequence: BHSCMCKAATTMGMDCW |
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Motif ID: |
UP00539 |
Motif name: |
Gli2_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
15 |
Similarity score: |
0.0280481 |
Alignment:
DTVBDDRGACCACCCAGDWDGBH
--------GSMMCCYARGGKKKC
Original motif |
Reverse complement motif |
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH |
Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH |
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Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
15 |
Similarity score: |
0.0288797 |
Alignment:
HGDHVHKGACCACCCGGBGBGDB
--------GSMMCCYARGGKKKC
Original motif |
Reverse complement motif |
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH |
Consensus sequence: HGDHVHKGACCACCCGGBGBGDB |
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Motif ID: |
UP00028 |
Motif name: |
Tcfap2e_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
15 |
Similarity score: |
0.029693 |
Alignment:
HHHGCCTSAGGCDAD
GSMMCCYARGGKKKC
Original motif |
Reverse complement motif |
Consensus sequence: HHHGCCTSAGGCDAD |
Consensus sequence: DTHGCCTSAGGCHHH |
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Dataset #: 2 |
Motif ID: 14 |
Motif name: ZEB1 |
Original motif |
Reverse complement motif |
Consensus sequence: CACCTD |
Consensus sequence: HAGGTG |
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Best Matches for Motif ID 14 (Highest to Lowest)
Motif ID: |
UP00068 |
Motif name: |
Eomes_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
6 |
Similarity score: |
0 |
Alignment:
VVBVCKACACCTHVBV
-------CACCTD---
Original motif |
Reverse complement motif |
Consensus sequence: VBVDAGGTGTYGVBBV |
Consensus sequence: VVBVCKACACCTHVBV |
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Motif ID: |
UP00199 |
Motif name: |
Six4 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
6 |
Similarity score: |
0.00433068 |
Alignment:
BBVHVGGTGTCATHDDT
---HAGGTG--------
Original motif |
Reverse complement motif |
Consensus sequence: ADDHATGACACCBHBBV |
Consensus sequence: BBVHVGGTGTCATHDDT |
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Motif ID: |
UP00068 |
Motif name: |
Eomes_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
6 |
Similarity score: |
0.00524081 |
Alignment:
HHHTTTCACACCTDHBV
--------CACCTD---
Original motif |
Reverse complement motif |
Consensus sequence: BVHDAGGTGTGAAAHHH |
Consensus sequence: HHHTTTCACACCTDHBV |
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Motif ID: |
UP00046 |
Motif name: |
Tcfe2a_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
7 |
Number of overlap: |
6 |
Similarity score: |
0.00911301 |
Alignment:
DHDBHGCACCTGBDDVB
------CACCTD-----
Original motif |
Reverse complement motif |
Consensus sequence: VBHHVCAGGTGCDVDHD |
Consensus sequence: DHDBHGCACCTGBDDVB |
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Motif ID: |
UP00047 |
Motif name: |
Zbtb7b_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
6 |
Similarity score: |
0.0233556 |
Alignment:
BDDRVGACCACCHBDVB
--------CACCTD---
Original motif |
Reverse complement motif |
Consensus sequence: BDDRVGACCACCHBDVB |
Consensus sequence: BBDVHGGTGGTCBKDDB |
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Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
11 |
Number of overlap: |
6 |
Similarity score: |
0.0233928 |
Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
-------HAGGTG----------
Original motif |
Reverse complement motif |
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH |
Consensus sequence: HGDHVHKGACCACCCGGBGBGDB |
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Motif ID: |
UP00539 |
Motif name: |
Gli2_v015681_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
6 |
Similarity score: |
0.0254338 |
Alignment:
HTBVVVDGGACCACCCRGRDBG
-----------CACCTD-----
Original motif |
Reverse complement motif |
Consensus sequence: HTBVVVDGGACCACCCRGRDBG |
Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH |
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Motif ID: |
UP00540 |
Motif name: |
Gli3_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
6 |
Similarity score: |
0.0290143 |
Alignment:
HDGHHBHRGACCACCCGSVDVG
-----------CACCTD-----
Original motif |
Reverse complement motif |
Consensus sequence: HDGHHBHRGACCACCCGSVDVG |
Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH |
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Motif ID: |
UP00036 |
Motif name: |
Myf6_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
5 |
Number of overlap: |
6 |
Similarity score: |
0.0309673 |
Alignment:
VVDBAACAGBTGBYHB
------HAGGTG----
Original motif |
Reverse complement motif |
Consensus sequence: VVDBAACAGBTGBYHB |
Consensus sequence: BDKVCABCTGTTBDBV |
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Motif ID: |
UP00249 |
Motif name: |
Nkx2-5 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
6 |
Similarity score: |
0.031502 |
Alignment:
HDADCCACTTRAAWTT
-----CACCTD-----
Original motif |
Reverse complement motif |
Consensus sequence: HDADCCACTTRAAWTT |
Consensus sequence: AAWTTMAAGTGGHTDH |
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Dataset #: 2 |
Motif ID: 15 |
Motif name: TFAP2A |
Original motif |
Reverse complement motif |
Consensus sequence: GCCBBVRGS |
Consensus sequence: SCMVBBGGC |
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Best Matches for Motif ID 15 (Highest to Lowest)
Motif ID: |
UP00010 |
Motif name: |
Tcfap2b_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
9 |
Similarity score: |
0.0115546 |
Alignment:
HHKGCCYSRGGCWAD
---GCCBBVRGS---
Original motif |
Reverse complement motif |
Consensus sequence: DTWGCCKSMGGCRHH |
Consensus sequence: HHKGCCYSRGGCWAD |
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Motif ID: |
UP00010 |
Motif name: |
Tcfap2b_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
9 |
Similarity score: |
0.0150447 |
Alignment:
DYGCCYBARGGCAH
--GCCBBVRGS---
Original motif |
Reverse complement motif |
Consensus sequence: DYGCCYBARGGCAH |
Consensus sequence: HTGCCMTVKGGCMD |
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Motif ID: |
UP00005 |
Motif name: |
Tcfap2a_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
9 |
Similarity score: |
0.0151527 |
Alignment:
WDHSCCYSRGGSRAD
---GCCBBVRGS---
Original motif |
Reverse complement motif |
Consensus sequence: WDHSCCYSRGGSRAD |
Consensus sequence: DTMSCCKSMGGSHDW |
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Motif ID: |
UP00087 |
Motif name: |
Tcfap2c_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
9 |
Similarity score: |
0.016909 |
Alignment:
WHHSCCYSRGGSDAD
---GCCBBVRGS---
Original motif |
Reverse complement motif |
Consensus sequence: WHHSCCYSRGGSDAD |
Consensus sequence: DTHSCCKSMGGSHHW |
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Motif ID: |
UP00087 |
Motif name: |
Tcfap2c_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
9 |
Similarity score: |
0.0170259 |
Alignment:
BHGCCCDAGGGCWD
--GCCBBVRGS---
Original motif |
Reverse complement motif |
Consensus sequence: BHGCCCDAGGGCWD |
Consensus sequence: HWGCCCTDGGGCDB |
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Motif ID: |
UP00028 |
Motif name: |
Tcfap2e_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
9 |
Similarity score: |
0.0198854 |
Alignment:
HHHGCCTSAGGCDAD
---GCCBBVRGS---
Original motif |
Reverse complement motif |
Consensus sequence: HHHGCCTSAGGCDAD |
Consensus sequence: DTHGCCTSAGGCHHH |
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Motif ID: |
UP00000 |
Motif name: |
Smad3_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
9 |
Number of overlap: |
9 |
Similarity score: |
0.0203681 |
Alignment:
BHBHDTGGCGGGGBDHD
SCMVBBGGC--------
Original motif |
Reverse complement motif |
Consensus sequence: DHHBCCCCGCCAHHBHB |
Consensus sequence: BHBHDTGGCGGGGBDHD |
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Motif ID: |
UP00003 |
Motif name: |
E2F3_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
9 |
Similarity score: |
0.0217064 |
Alignment:
BBBDYTGGCGCCKWDBD
SCMVBBGGC--------
Original motif |
Reverse complement motif |
Consensus sequence: HBHWYGGCGCCAMDVBB |
Consensus sequence: BBBDYTGGCGCCKWDBD |
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Motif ID: |
UP00005 |
Motif name: |
Tcfap2a_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
9 |
Similarity score: |
0.0234775 |
Alignment:
HHRCCBBWGGDCDB
--GCCBBVRGS---
Original motif |
Reverse complement motif |
Consensus sequence: HHRCCBBWGGDCDB |
Consensus sequence: BDGHCCWBVGGKDH |
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Motif ID: |
UP00093 |
Motif name: |
Klf7_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
9 |
Similarity score: |
0.026642 |
Alignment:
VVDBATACGCCCHAHHD
--------GCCBBVRGS
Original motif |
Reverse complement motif |
Consensus sequence: VVDBATACGCCCHAHHD |
Consensus sequence: DHDTHGGGCGTATBHBB |
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Dataset #: 2 |
Motif ID: 16 |
Motif name: SP1 |
Original motif |
Reverse complement motif |
Consensus sequence: CCCCKCCCCC |
Consensus sequence: GGGGGYGGGG |
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Best Matches for Motif ID 16 (Highest to Lowest)
Motif ID: |
UP00021 |
Motif name: |
Zfp281_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
10 |
Similarity score: |
0.0231018 |
Alignment:
DBCCCCCCCCCCMYC
--CCCCKCCCCC---
Original motif |
Reverse complement motif |
Consensus sequence: DBCCCCCCCCCCMYC |
Consensus sequence: GKRGGGGGGGGGGBD |
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Motif ID: |
UP00093 |
Motif name: |
Klf7_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
10 |
Similarity score: |
0.0303207 |
Alignment:
HBDRCCMCGCCCHHHD
----CCCCKCCCCC--
Original motif |
Reverse complement motif |
Consensus sequence: HBDRCCMCGCCCHHHD |
Consensus sequence: DHHDGGGCGRGGKHBH |
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Motif ID: |
UP00033 |
Motif name: |
Zfp410_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
10 |
Similarity score: |
0.0323007 |
Alignment:
HHHHDGGGGCGGDBHDV
----GGGGGYGGGG---
Original motif |
Reverse complement motif |
Consensus sequence: BHHBHCCGCCCCDHHHH |
Consensus sequence: HHHHDGGGGCGGDBHDV |
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Motif ID: |
UP00099 |
Motif name: |
Ascl2_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
10 |
Similarity score: |
0.0340973 |
Alignment:
HVDVGGGHGGGGDBHB
--GGGGGYGGGG----
Original motif |
Reverse complement motif |
Consensus sequence: BHVDCCCCDCCCBDBH |
Consensus sequence: HVDVGGGHGGGGDBHB |
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|
|
Motif ID: |
UP00043 |
Motif name: |
Bcl6b_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
10 |
Similarity score: |
0.0351051 |
Alignment:
BHHHWGGGGCGGBBVH
----GGGGGYGGGG--
Original motif |
Reverse complement motif |
Consensus sequence: HBBBCCGCCCCWHHHV |
Consensus sequence: BHHHWGGGGCGGBBVH |
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|
|
Motif ID: |
UP00539 |
Motif name: |
Gli2_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
7 |
Number of overlap: |
10 |
Similarity score: |
0.0390437 |
Alignment:
HDBABCGBKRGYGGCGMSBHAK
------GGGGGYGGGG------
Original motif |
Reverse complement motif |
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH |
Consensus sequence: HDBABCGBKRGYGGCGMSBHAK |
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|
|
|
Motif ID: |
UP00540 |
Motif name: |
Gli3_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
7 |
Number of overlap: |
10 |
Similarity score: |
0.0393358 |
Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
-------GGGGGYGGGG------
Original motif |
Reverse complement motif |
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH |
Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV |
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Motif ID: |
UP00000 |
Motif name: |
Smad3_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
10 |
Similarity score: |
0.0413863 |
Alignment:
DHHBCCCCGCCAHHBHB
----CCCCKCCCCC---
Original motif |
Reverse complement motif |
Consensus sequence: DHHBCCCCGCCAHHBHB |
Consensus sequence: BHBHDTGGCGGGGBDHD |
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Motif ID: |
UP00022 |
Motif name: |
Zfp740_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
10 |
Similarity score: |
0.0418947 |
Alignment:
HVBCCCCCCCCMHHHB
---CCCCKCCCCC---
Original motif |
Reverse complement motif |
Consensus sequence: HVBCCCCCCCCMHHHB |
Consensus sequence: BHHDYGGGGGGGGBVD |
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Motif ID: |
UP00002 |
Motif name: |
Sp4_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
10 |
Similarity score: |
0.0420708 |
Alignment:
BDHHMCGCCCCCTHVBB
--CCCCKCCCCC-----
Original motif |
Reverse complement motif |
Consensus sequence: BDHHMCGCCCCCTHVBB |
Consensus sequence: BVVHAGGGGGCGRDHHB |
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Dataset #: 2 |
Motif ID: 17 |
Motif name: RXRAVDR |
Original motif |
Reverse complement motif |
Consensus sequence: GGGTCAWBGRGTTCA |
Consensus sequence: TGAACKCBWTGACCC |
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Best Matches for Motif ID 17 (Highest to Lowest)
Motif ID: |
UP00037 |
Motif name: |
Zfp105_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
15 |
Similarity score: |
0.0631638 |
Alignment:
DYGVKTCAATAABTYDD
--GGGTCAWBGRGTTCA
Original motif |
Reverse complement motif |
Consensus sequence: DYGVKTCAATAABTYDD |
Consensus sequence: HDMAVTTATTGARVCMH |
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Motif ID: |
UP00044 |
Motif name: |
Mafk_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
15 |
Similarity score: |
0.0639668 |
Alignment:
DWAAAWTGCTGACTH
TGAACKCBWTGACCC
Original motif |
Reverse complement motif |
Consensus sequence: DWAAAWTGCTGACTH |
Consensus sequence: HAGTCAGCAWTTTWD |
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Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
15 |
Similarity score: |
0.0682816 |
Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
--------GGGTCAWBGRGTTCA
Original motif |
Reverse complement motif |
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH |
Consensus sequence: HGDHVHKGACCACCCGGBGBGDB |
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Motif ID: |
UP00539 |
Motif name: |
Gli2_v015681_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
15 |
Similarity score: |
0.06995 |
Alignment:
HTBVVVDGGACCACCCRGRDBG
-TGAACKCBWTGACCC------
Original motif |
Reverse complement motif |
Consensus sequence: HTBVVVDGGACCACCCRGRDBG |
Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH |
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Motif ID: |
UP00539 |
Motif name: |
Gli2_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
15 |
Similarity score: |
0.0711699 |
Alignment:
DVMHHDHKGACCCTCCTSVCBH
-------TGAACKCBWTGACCC
Original motif |
Reverse complement motif |
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH |
Consensus sequence: DVMHHDHKGACCCTCCTSVCBH |
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Motif ID: |
UP00540 |
Motif name: |
Gli3_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
15 |
Similarity score: |
0.072162 |
Alignment:
CVHBSCGGGTGGTCMHVHHCDH
------GGGTCAWBGRGTTCA-
Original motif |
Reverse complement motif |
Consensus sequence: HDGHHBHRGACCACCCGSVDVG |
Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH |
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Motif ID: |
UP00045 |
Motif name: |
Mafb_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
14 |
Similarity score: |
0.562034 |
Alignment:
DMTWDGTCAGCADWTTH-
-TGAACKCBWTGACCC--
Original motif |
Reverse complement motif |
Consensus sequence: HAAWDTGCTGACDWARH |
Consensus sequence: DMTWDGTCAGCADWTTH |
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Motif ID: |
UP00012 |
Motif name: |
Bbx_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
14 |
Similarity score: |
0.562788 |
Alignment:
HWBTTCAWTGAADTH-
-GGGTCAWBGRGTTCA
Original motif |
Reverse complement motif |
Consensus sequence: HADTTCAWTGAABWD |
Consensus sequence: HWBTTCAWTGAADTH |
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Motif ID: |
UP00005 |
Motif name: |
Tcfap2a_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.56549 |
Alignment:
HHRCCBBWGGDCDB-
GGGTCAWBGRGTTCA
Original motif |
Reverse complement motif |
Consensus sequence: HHRCCBBWGGDCDB |
Consensus sequence: BDGHCCWBVGGKDH |
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Motif ID: |
UP00067 |
Motif name: |
Lef1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
14 |
Similarity score: |
0.565777 |
Alignment:
VDDAGATCAAAGGKDDD-
---GGGTCAWBGRGTTCA
Original motif |
Reverse complement motif |
Consensus sequence: DDDYCCTTTGATCTDDV |
Consensus sequence: VDDAGATCAAAGGKDDD |
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Dataset #: 2 |
Motif ID: 18 |
Motif name: RREB1 |
Original motif |
Reverse complement motif |
Consensus sequence: CCCCMAAMCAMCCMCMMMCV |
Consensus sequence: BGRRRGRGGRTGRTTYGGGG |
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Best Matches for Motif ID 18 (Highest to Lowest)
Motif ID: |
UP00540 |
Motif name: |
Gli3_v015681_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
20 |
Similarity score: |
0.0443369 |
Alignment:
YBVDMGTGGGTGGTCKVVBVBBT
BGRRRGRGGRTGRTTYGGGG---
Original motif |
Reverse complement motif |
Consensus sequence: ABBBBVVRGACCACCCACRDBBM |
Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT |
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Motif ID: |
UP00538 |
Motif name: |
Gli1_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
20 |
Similarity score: |
0.0490569 |
Alignment:
MHHHWHYTMCCHCCCACVAABVH
--CCCCMAAMCAMCCMCMMMCV-
Original motif |
Reverse complement motif |
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH |
Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY |
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Motif ID: |
UP00538 |
Motif name: |
Gli1_v015681_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
20 |
Similarity score: |
0.0546172 |
Alignment:
BTBVTCVTGGGTGGTCMVVDVBB
-BGRRRGRGGRTGRTTYGGGG--
Original motif |
Reverse complement motif |
Consensus sequence: BBBDVVRGACCACCCAVGABBAB |
Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB |
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Motif ID: |
UP00540 |
Motif name: |
Gli3_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
20 |
Similarity score: |
0.055783 |
Alignment:
VYWVVHCRCCACMCACGAHSBHH
-CCCCMAAMCAMCCMCMMMCV--
Original motif |
Reverse complement motif |
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH |
Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV |
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Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
20 |
Similarity score: |
0.057969 |
Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
--BGRRRGRGGRTGRTTYGGGG-
Original motif |
Reverse complement motif |
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB |
Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH |
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Motif ID: |
UP00539 |
Motif name: |
Gli2_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
20 |
Similarity score: |
0.0595101 |
Alignment:
DTVBDDRGACCACCCAGDWDGBH
--CCCCMAAMCAMCCMCMMMCV-
Original motif |
Reverse complement motif |
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH |
Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH |
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Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
20 |
Similarity score: |
0.0622003 |
Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
-BGRRRGRGGRTGRTTYGGGG--
Original motif |
Reverse complement motif |
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH |
Consensus sequence: HGDHVHKGACCACCCGGBGBGDB |
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Motif ID: |
UP00539 |
Motif name: |
Gli2_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
20 |
Similarity score: |
0.0626951 |
Alignment:
RTHBSYCGCCMCMYVCGBTVDH
-CCCCMAAMCAMCCMCMMMCV-
Original motif |
Reverse complement motif |
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH |
Consensus sequence: HDBABCGBKRGYGGCGMSBHAK |
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Motif ID: |
UP00539 |
Motif name: |
Gli2_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
20 |
Similarity score: |
0.0631901 |
Alignment:
DVMHHDHKGACCCTCCTSVCBH
CCCCMAAMCAMCCMCMMMCV--
Original motif |
Reverse complement motif |
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH |
Consensus sequence: DVMHHDHKGACCCTCCTSVCBH |
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Motif ID: |
UP00528 |
Motif name: |
Foxm1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
20 |
Similarity score: |
0.0673848 |
Alignment:
DCATDBTGHGCATKMTTBRSWR
--BGRRRGRGGRTGRTTYGGGG
Original motif |
Reverse complement motif |
Consensus sequence: MWSMBAARRATGCDCABHATGD |
Consensus sequence: DCATDBTGHGCATKMTTBRSWR |
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Dataset #: 2 |
Motif ID: 19 |
Motif name: REST |
Original motif |
Reverse complement motif |
Consensus sequence: TTCAGCACCATGGACAGCKCC |
Consensus sequence: GGYGCTGTCCATGGTGCTGAA |
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Best Matches for Motif ID 19 (Highest to Lowest)
Motif ID: |
UP00538 |
Motif name: |
Gli1_v015681_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
21 |
Similarity score: |
0.0699178 |
Alignment:
BBBDVVRGACCACCCAVGABBAB
--TTCAGCACCATGGACAGCKCC
Original motif |
Reverse complement motif |
Consensus sequence: BBBDVVRGACCACCCAVGABBAB |
Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB |
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Motif ID: |
UP00540 |
Motif name: |
Gli3_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
21 |
Similarity score: |
0.0734685 |
Alignment:
VMYDHDGMCCHCCKBGVVAAVH
GGYGCTGTCCATGGTGCTGAA-
Original motif |
Reverse complement motif |
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB |
Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH |
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Motif ID: |
UP00540 |
Motif name: |
Gli3_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
21 |
Similarity score: |
0.0740652 |
Alignment:
VYWVVHCRCCACMCACGAHSBHH
-TTCAGCACCATGGACAGCKCC-
Original motif |
Reverse complement motif |
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH |
Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV |
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Motif ID: |
UP00538 |
Motif name: |
Gli1_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
21 |
Similarity score: |
0.0750152 |
Alignment:
MHHHWHYTMCCHCCCACVAABVH
--TTCAGCACCATGGACAGCKCC
Original motif |
Reverse complement motif |
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH |
Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY |
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Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
21 |
Similarity score: |
0.0751449 |
Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
GGYGCTGTCCATGGTGCTGAA--
Original motif |
Reverse complement motif |
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH |
Consensus sequence: HGDHVHKGACCACCCGGBGBGDB |
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Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
21 |
Similarity score: |
0.075832 |
Alignment:
BDDHVDKGCCACCCVCGCTDBVH
-TTCAGCACCATGGACAGCKCC-
Original motif |
Reverse complement motif |
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB |
Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH |
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Motif ID: |
UP00539 |
Motif name: |
Gli2_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
21 |
Similarity score: |
0.0773446 |
Alignment:
DTVBDDRGACCACCCAGDWDGBH
--TTCAGCACCATGGACAGCKCC
Original motif |
Reverse complement motif |
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH |
Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH |
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Motif ID: |
UP00050 |
Motif name: |
Bhlhb2_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
21 |
Similarity score: |
0.0775367 |
Alignment:
YDYBDHTMCACGTGGADDBMDGT
--TTCAGCACCATGGACAGCKCC
Original motif |
Reverse complement motif |
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT |
Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM |
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Motif ID: |
UP00528 |
Motif name: |
Foxm1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
21 |
Similarity score: |
0.077977 |
Alignment:
DCATDBTGHGCATKMTTBRSWR
-GGYGCTGTCCATGGTGCTGAA
Original motif |
Reverse complement motif |
Consensus sequence: MWSMBAARRATGCDCABHATGD |
Consensus sequence: DCATDBTGHGCATKMTTBRSWR |
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Motif ID: |
UP00400 |
Motif name: |
Zif268 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
21 |
Similarity score: |
0.0785969 |
Alignment:
BADHBDHCGCCCMCGCAHHDBBV
--GGYGCTGTCCATGGTGCTGAA
Original motif |
Reverse complement motif |
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV |
Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB |
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Dataset #: 2 |
Motif ID: 20 |
Motif name: PPARGRXRA |
Original motif |
Reverse complement motif |
Consensus sequence: BTRGGDCARAGGKCA |
Consensus sequence: TGRCCTKTGHCCKAB |
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Best Matches for Motif ID 20 (Highest to Lowest)
Motif ID: |
UP00067 |
Motif name: |
Lef1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
15 |
Similarity score: |
0.0304954 |
Alignment:
VDDAGATCAAAGGKDDD
-BTRGGDCARAGGKCA-
Original motif |
Reverse complement motif |
Consensus sequence: DDDYCCTTTGATCTDDV |
Consensus sequence: VDDAGATCAAAGGKDDD |
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Motif ID: |
UP00058 |
Motif name: |
Tcf3_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
15 |
Similarity score: |
0.0319475 |
Alignment:
HHHASATCAAAGVRHHH
-BTRGGDCARAGGKCA-
Original motif |
Reverse complement motif |
Consensus sequence: HHHASATCAAAGVRHHH |
Consensus sequence: HHHKVCTTTGATSTHHH |
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Motif ID: |
UP00054 |
Motif name: |
Tcf7_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
15 |
Similarity score: |
0.032779 |
Alignment:
BHHASATCAAAGGAHHH
-BTRGGDCARAGGKCA-
Original motif |
Reverse complement motif |
Consensus sequence: BHHASATCAAAGGAHHH |
Consensus sequence: HHHTCCTTTGATSTHHV |
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Motif ID: |
UP00082 |
Motif name: |
Zfp187_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
15 |
Similarity score: |
0.0334185 |
Alignment:
VHMDGGACVAGGRCDH
BTRGGDCARAGGKCA-
Original motif |
Reverse complement motif |
Consensus sequence: DDGMCCTBGTCCHYHV |
Consensus sequence: VHMDGGACVAGGRCDH |
|
|
|
|
Motif ID: |
UP00062 |
Motif name: |
Sox4_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
15 |
Similarity score: |
0.0352539 |
Alignment:
HBDDDAACAAAGRVBHH
-BTRGGDCARAGGKCA-
Original motif |
Reverse complement motif |
Consensus sequence: HBDDDAACAAAGRVBHH |
Consensus sequence: HHBBMCTTTGTTHDDBH |
|
|
|
|
Motif ID: |
UP00030 |
Motif name: |
Sox11_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
15 |
Similarity score: |
0.0358782 |
Alignment:
HBDDRAACAAAGRABHH
-BTRGGDCARAGGKCA-
Original motif |
Reverse complement motif |
Consensus sequence: HBDDRAACAAAGRABHH |
Consensus sequence: HHBTMCTTTGTTMDDVH |
|
|
|
|
Motif ID: |
UP00101 |
Motif name: |
Sox12_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
15 |
Similarity score: |
0.0374729 |
Alignment:
HDTMCTTTGTSTVDBB
TGRCCTKTGHCCKAB-
Original motif |
Reverse complement motif |
Consensus sequence: VVDBASACAAAGRADH |
Consensus sequence: HDTMCTTTGTSTVDBB |
|
|
|
|
Motif ID: |
UP00083 |
Motif name: |
Tcf7l2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
15 |
Similarity score: |
0.0379757 |
Alignment:
BDDASATCAAAGGMDDD
-BTRGGDCARAGGKCA-
Original motif |
Reverse complement motif |
Consensus sequence: DDDYCCTTTGATSTDDV |
Consensus sequence: BDDASATCAAAGGMDDD |
|
|
|
|
Motif ID: |
UP00093 |
Motif name: |
Klf7_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
15 |
Similarity score: |
0.0382733 |
Alignment:
DHHDGGGCGRGGKHBH
BTRGGDCARAGGKCA-
Original motif |
Reverse complement motif |
Consensus sequence: HBDRCCMCGCCCHHHD |
Consensus sequence: DHHDGGGCGRGGKHBH |
|
|
|
|
Motif ID: |
UP00055 |
Motif name: |
Hbp1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
15 |
Similarity score: |
0.0397168 |
Alignment:
DDDYCCCATTGTVHABH
BTRGGDCARAGGKCA--
Original motif |
Reverse complement motif |
Consensus sequence: DDDYCCCATTGTVHABH |
Consensus sequence: HBTHVACAATGGGMDHD |
|
|
|
|
Dataset #: 2 |
Motif ID: 21 |
Motif name: PLAG1 |
Original motif |
Reverse complement motif |
Consensus sequence: GGGGCCCAAGGGGG |
Consensus sequence: CCCCCTTGGGCCCC |
|
|
|
|
Best Matches for Motif ID 21 (Highest to Lowest)
Motif ID: |
UP00102 |
Motif name: |
Zic1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0499525 |
Alignment:
CCCCCCCGGGGGHB
CCCCCTTGGGCCCC
Original motif |
Reverse complement motif |
Consensus sequence: BHCCCCCGGGGGGG |
Consensus sequence: CCCCCCCGGGGGHB |
|
|
|
|
Motif ID: |
UP00538 |
Motif name: |
Gli1_v015681_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0540613 |
Alignment:
BTBVTCVTGGGTGGTCMVVDVBB
---------CCCCCTTGGGCCCC
Original motif |
Reverse complement motif |
Consensus sequence: BBBDVVRGACCACCCAVGABBAB |
Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB |
|
|
|
|
Motif ID: |
UP00057 |
Motif name: |
Zic2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0548411 |
Alignment:
VCCCCCCCGGGGGRB
-CCCCCTTGGGCCCC
Original motif |
Reverse complement motif |
Consensus sequence: BMCCCCCGGGGGGGB |
Consensus sequence: VCCCCCCCGGGGGRB |
|
|
|
|
Motif ID: |
UP00005 |
Motif name: |
Tcfap2a_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0556785 |
Alignment:
HHRCCBBWGGDCDB
GGGGCCCAAGGGGG
Original motif |
Reverse complement motif |
Consensus sequence: HHRCCBBWGGDCDB |
Consensus sequence: BDGHCCWBVGGKDH |
|
|
|
|
Motif ID: |
UP00006 |
Motif name: |
Zic3_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
14 |
Similarity score: |
0.056976 |
Alignment:
BMCCCCCGGGGGGGB
-CCCCCTTGGGCCCC
Original motif |
Reverse complement motif |
Consensus sequence: BMCCCCCGGGGGGGB |
Consensus sequence: VCCCCCCCGGGGGRB |
|
|
|
|
Motif ID: |
UP00540 |
Motif name: |
Gli3_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
9 |
Number of overlap: |
14 |
Similarity score: |
0.0573495 |
Alignment:
HDGHHBHRGACCACCCGSVDVG
CCCCCTTGGGCCCC--------
Original motif |
Reverse complement motif |
Consensus sequence: HDGHHBHRGACCACCCGSVDVG |
Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH |
|
|
|
|
Motif ID: |
UP00540 |
Motif name: |
Gli3_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
14 |
Similarity score: |
0.0579022 |
Alignment:
VMYDHDGMCCHCCKBGVVAAVH
--------CCCCCTTGGGCCCC
Original motif |
Reverse complement motif |
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB |
Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH |
|
|
|
|
Motif ID: |
UP00539 |
Motif name: |
Gli2_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
9 |
Number of overlap: |
14 |
Similarity score: |
0.0580662 |
Alignment:
DVMHHDHKGACCCTCCTSVCBH
CCCCCTTGGGCCCC--------
Original motif |
Reverse complement motif |
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH |
Consensus sequence: DVMHHDHKGACCCTCCTSVCBH |
|
|
|
|
Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0597453 |
Alignment:
HGDHVHKGACCACCCGGBGBGDB
---------CCCCCTTGGGCCCC
Original motif |
Reverse complement motif |
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH |
Consensus sequence: HGDHVHKGACCACCCGGBGBGDB |
|
|
|
|
Motif ID: |
UP00021 |
Motif name: |
Zfp281_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0598088 |
Alignment:
DBCCCCCCCCCCMYC
-CCCCCTTGGGCCCC
Original motif |
Reverse complement motif |
Consensus sequence: DBCCCCCCCCCCMYC |
Consensus sequence: GKRGGGGGGGGGGBD |
|
|
|
|
Dataset #: 2 |
Motif ID: 22 |
Motif name: NR2F1 |
Original motif |
Reverse complement motif |
Consensus sequence: TGAMCTTTGMMCYT |
Consensus sequence: AKGYYCAAAGRTCA |
|
|
|
|
Best Matches for Motif ID 22 (Highest to Lowest)
Motif ID: |
UP00083 |
Motif name: |
Tcf7l2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
14 |
Similarity score: |
0.0452364 |
Alignment:
DDDYCCTTTGATSTDDV
-TGAMCTTTGMMCYT--
Original motif |
Reverse complement motif |
Consensus sequence: DDDYCCTTTGATSTDDV |
Consensus sequence: BDDASATCAAAGGMDDD |
|
|
|
|
Motif ID: |
UP00067 |
Motif name: |
Lef1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
14 |
Similarity score: |
0.0453449 |
Alignment:
VDDAGATCAAAGGKDDD
--AKGYYCAAAGRTCA-
Original motif |
Reverse complement motif |
Consensus sequence: DDDYCCTTTGATCTDDV |
Consensus sequence: VDDAGATCAAAGGKDDD |
|
|
|
|
Motif ID: |
UP00539 |
Motif name: |
Gli2_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
8 |
Number of overlap: |
14 |
Similarity score: |
0.0461358 |
Alignment:
DVMHHDHKGACCCTCCTSVCBH
-------TGAMCTTTGMMCYT-
Original motif |
Reverse complement motif |
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH |
Consensus sequence: DVMHHDHKGACCCTCCTSVCBH |
|
|
|
|
Motif ID: |
UP00054 |
Motif name: |
Tcf7_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
14 |
Similarity score: |
0.0461768 |
Alignment:
BHHASATCAAAGGAHHH
--AKGYYCAAAGRTCA-
Original motif |
Reverse complement motif |
Consensus sequence: BHHASATCAAAGGAHHH |
Consensus sequence: HHHTCCTTTGATSTHHV |
|
|
|
|
Motif ID: |
UP00058 |
Motif name: |
Tcf3_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
14 |
Similarity score: |
0.0473628 |
Alignment:
HHHASATCAAAGVRHHH
--AKGYYCAAAGRTCA-
Original motif |
Reverse complement motif |
Consensus sequence: HHHASATCAAAGVRHHH |
Consensus sequence: HHHKVCTTTGATSTHHH |
|
|
|
|
Motif ID: |
UP00082 |
Motif name: |
Zfp187_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0480188 |
Alignment:
DDGMCCTBGTCCHYHV
TGAMCTTTGMMCYT--
Original motif |
Reverse complement motif |
Consensus sequence: DDGMCCTBGTCCHYHV |
Consensus sequence: VHMDGGACVAGGRCDH |
|
|
|
|
Motif ID: |
UP00062 |
Motif name: |
Sox4_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
14 |
Similarity score: |
0.0495447 |
Alignment:
HHBBMCTTTGTTHDDBH
-TGAMCTTTGMMCYT--
Original motif |
Reverse complement motif |
Consensus sequence: HBDDDAACAAAGRVBHH |
Consensus sequence: HHBBMCTTTGTTHDDBH |
|
|
|
|
Motif ID: |
UP00030 |
Motif name: |
Sox11_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
14 |
Similarity score: |
0.0499033 |
Alignment:
HHBTMCTTTGTTMDDVH
-TGAMCTTTGMMCYT--
Original motif |
Reverse complement motif |
Consensus sequence: HBDDRAACAAAGRABHH |
Consensus sequence: HHBTMCTTTGTTMDDVH |
|
|
|
|
Motif ID: |
UP00023 |
Motif name: |
Sox30_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
14 |
Similarity score: |
0.0511534 |
Alignment:
DHDBAACAATDRHHHH
--TGAMCTTTGMMCYT
Original motif |
Reverse complement motif |
Consensus sequence: DHDBAACAATDRHHHH |
Consensus sequence: HHHHMHATTGTTBDHD |
|
|
|
|
Motif ID: |
UP00005 |
Motif name: |
Tcfap2a_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
14 |
Similarity score: |
0.0516973 |
Alignment:
BDGHCCWBVGGKDH
AKGYYCAAAGRTCA
Original motif |
Reverse complement motif |
Consensus sequence: HHRCCBBWGGDCDB |
Consensus sequence: BDGHCCWBVGGKDH |
|
|
|
|
Dataset #: 2 |
Motif ID: 23 |
Motif name: MZF1_1-4 |
Original motif |
Reverse complement motif |
Consensus sequence: BGGGGA |
Consensus sequence: TCCCCV |
|
|
|
|
Best Matches for Motif ID 23 (Highest to Lowest)
Motif ID: |
UP00176 |
Motif name: |
Crx |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
6 |
Similarity score: |
0 |
Alignment:
DGGMTAATCCCCDWBK
-------TCCCCV---
Original motif |
Reverse complement motif |
Consensus sequence: YBWDGGGGATTARCCD |
Consensus sequence: DGGMTAATCCCCDWBK |
|
|
|
|
Motif ID: |
UP00265 |
Motif name: |
Pitx3 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
6 |
Similarity score: |
0.00193291 |
Alignment:
GBHDGCTAATCCCCCB
---------TCCCCV-
Original motif |
Reverse complement motif |
Consensus sequence: VGGGGGATTAGCDDBC |
Consensus sequence: GBHDGCTAATCCCCCB |
|
|
|
|
Motif ID: |
UP00239 |
Motif name: |
Obox2 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
6 |
Similarity score: |
0.00284735 |
Alignment:
HTARTTAATCCCCCKBD
--------TCCCCV---
Original motif |
Reverse complement motif |
Consensus sequence: DBRGGGGGATTAAMTAH |
Consensus sequence: HTARTTAATCCCCCKBD |
|
|
|
|
Motif ID: |
UP00216 |
Motif name: |
Obox1 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
9 |
Number of overlap: |
6 |
Similarity score: |
0.00461976 |
Alignment:
DDARGGGGATTAACDHH
---BGGGGA--------
Original motif |
Reverse complement motif |
Consensus sequence: DDARGGGGATTAACDHH |
Consensus sequence: DHDGTTAATCCCCKTDD |
|
|
|
|
Motif ID: |
UP00160 |
Motif name: |
Obox3 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
6 |
Similarity score: |
0.00641818 |
Alignment:
HHWGTTAATCCCCCBBH
--------TCCCCV---
Original motif |
Reverse complement motif |
Consensus sequence: HBVGGGGGATTAACWHH |
Consensus sequence: HHWGTTAATCCCCCBBH |
|
|
|
|
Motif ID: |
UP00208 |
Motif name: |
Obox5_2284.1 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
10 |
Number of overlap: |
6 |
Similarity score: |
0.0110256 |
Alignment:
HDVRGGGATTAAHTHHH
--BGGGGA---------
Original motif |
Reverse complement motif |
Consensus sequence: HDVRGGGATTAAHTHHH |
Consensus sequence: DHHAHTTAATCCCKVDH |
|
|
|
|
Motif ID: |
UP00143 |
Motif name: |
Dobox5 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
6 |
Similarity score: |
0.0136568 |
Alignment:
DDHVGGGATTAATHDTH
--BGGGGA---------
Original motif |
Reverse complement motif |
Consensus sequence: DDHVGGGATTAATHDTH |
Consensus sequence: DADHATTAATCCCBHHH |
|
|
|
|
Motif ID: |
UP00229 |
Motif name: |
Otx1 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
10 |
Number of overlap: |
6 |
Similarity score: |
0.0138939 |
Alignment:
DDDRGGGATTAATWHHB
--BGGGGA---------
Original motif |
Reverse complement motif |
Consensus sequence: DDDRGGGATTAATWHHB |
Consensus sequence: VHHWATTAATCCCMDHH |
|
|
|
|
Motif ID: |
UP00267 |
Motif name: |
Otx2 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
10 |
Number of overlap: |
6 |
Similarity score: |
0.016387 |
Alignment:
DDDRGGGATTAATHDDH
--BGGGGA---------
Original motif |
Reverse complement motif |
Consensus sequence: DDDRGGGATTAATHDDH |
Consensus sequence: DDHHATTAATCCCKDHD |
|
|
|
|
Motif ID: |
UP00153 |
Motif name: |
Pitx1 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
9 |
Number of overlap: |
6 |
Similarity score: |
0.0164951 |
Alignment:
HBVDRGGGATTAAMDHH
---BGGGGA--------
Original motif |
Reverse complement motif |
Consensus sequence: HBVDRGGGATTAAMDHH |
Consensus sequence: HHDRTTAATCCCKHBVH |
|
|
|
|
Dataset #: 2 |
Motif ID: 24 |
Motif name: Ar |
Original motif |
Reverse complement motif |
Consensus sequence: HWDAGHACRHHVTGTHCCHVMV |
Consensus sequence: VRVDGGHACAVDDKGTHCTDWH |
|
|
|
|
Best Matches for Motif ID 24 (Highest to Lowest)
Motif ID: |
UP00032 |
Motif name: |
Gata3_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
22 |
Similarity score: |
0.0676991 |
Alignment:
HBHDVBWGATHBTATCRVBHHH
HWDAGHACRHHVTGTHCCHVMV
Original motif |
Reverse complement motif |
Consensus sequence: HBHDVBWGATHBTATCRVBHHH |
Consensus sequence: HHHBBMGATAVHATCWVVDHVH |
|
|
|
|
Motif ID: |
UP00034 |
Motif name: |
Sox7_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
22 |
Similarity score: |
0.0692146 |
Alignment:
VVYDDDCHCAVACAATTDBVAC
VRVDGGHACAVDDKGTHCTDWH
Original motif |
Reverse complement motif |
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB |
Consensus sequence: VVYDDDCHCAVACAATTDBVAC |
|
|
|
|
Motif ID: |
UP00050 |
Motif name: |
Bhlhb2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
22 |
Similarity score: |
0.0695612 |
Alignment:
DDHBHBSTCACGTGAHBBDHHM
VRVDGGHACAVDDKGTHCTDWH
Original motif |
Reverse complement motif |
Consensus sequence: RDHDBVDTCACGTGASBHVHDH |
Consensus sequence: DDHBHBSTCACGTGAHBBDHHM |
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|
|
|
Motif ID: |
UP00050 |
Motif name: |
Bhlhb2_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
22 |
Similarity score: |
0.0771346 |
Alignment:
YDYBDHTMCACGTGGADDBMDGT
-HWDAGHACRHHVTGTHCCHVMV
Original motif |
Reverse complement motif |
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT |
Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM |
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|
|
|
Motif ID: |
UP00526 |
Motif name: |
Foxn1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
22 |
Similarity score: |
0.0772045 |
Alignment:
WHVBVVMACGCGCGTCDYHWDH
VRVDGGHACAVDDKGTHCTDWH
Original motif |
Reverse complement motif |
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH |
Consensus sequence: HDWHMHGACGCGCGTRBVVBHW |
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|
|
|
Motif ID: |
UP00526 |
Motif name: |
Foxn1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
22 |
Similarity score: |
0.077433 |
Alignment:
BDVBCDACGCKCGCGTBHRKHD
VRVDGGHACAVDDKGTHCTDWH
Original motif |
Reverse complement motif |
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB |
Consensus sequence: BDVBCDACGCKCGCGTBHRKHD |
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|
|
|
Motif ID: |
UP00540 |
Motif name: |
Gli3_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
22 |
Similarity score: |
0.0776897 |
Alignment:
VYWVVHCRCCACMCACGAHSBHH
-HWDAGHACRHHVTGTHCCHVMV
Original motif |
Reverse complement motif |
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH |
Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV |
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|
|
|
Motif ID: |
UP00528 |
Motif name: |
Foxm1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
22 |
Similarity score: |
0.0787977 |
Alignment:
MWSMBAARRATGCDCABHATGD
HWDAGHACRHHVTGTHCCHVMV
Original motif |
Reverse complement motif |
Consensus sequence: MWSMBAARRATGCDCABHATGD |
Consensus sequence: DCATDBTGHGCATKMTTBRSWR |
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|
|
|
Motif ID: |
UP00034 |
Motif name: |
Sox7_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
22 |
Similarity score: |
0.0792723 |
Alignment:
HHBDHDDAACAATDRHHHHHBW
HWDAGHACRHHVTGTHCCHVMV
Original motif |
Reverse complement motif |
Consensus sequence: HHBDHDDAACAATDRHHHHHBW |
Consensus sequence: WBHHHHHMDATTGTTHDHDVHH |
|
|
|
|
Motif ID: |
UP00539 |
Motif name: |
Gli2_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
22 |
Similarity score: |
0.0799314 |
Alignment:
HVGVSAGGAGGGTCYHHHHYVH
HWDAGHACRHHVTGTHCCHVMV
Original motif |
Reverse complement motif |
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH |
Consensus sequence: DVMHHDHKGACCCTCCTSVCBH |
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|
|
|
Dataset #: 2 |
Motif ID: 25 |
Motif name: Arnt |
Original motif |
Reverse complement motif |
Consensus sequence: CACGTG |
Consensus sequence: CACGTG |
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|
|
Best Matches for Motif ID 25 (Highest to Lowest)
Motif ID: |
UP00050 |
Motif name: |
Bhlhb2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
6 |
Similarity score: |
0 |
Alignment:
RDHDBVDTCACGTGASBHVHDH
--------CACGTG--------
Original motif |
Reverse complement motif |
Consensus sequence: RDHDBVDTCACGTGASBHVHDH |
Consensus sequence: DDHBHBSTCACGTGAHBBDHHM |
|
|
|
|
Motif ID: |
UP00050 |
Motif name: |
Bhlhb2_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
9 |
Number of overlap: |
6 |
Similarity score: |
0.0026425 |
Alignment:
ACHRBHDTCCACGTGYAHHBMHM
---------CACGTG--------
Original motif |
Reverse complement motif |
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT |
Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM |
|
|
|
|
Motif ID: |
UP00060 |
Motif name: |
Max_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
6 |
Similarity score: |
0.0044422 |
Alignment:
DDASCACGTGBTBVDD
----CACGTG------
Original motif |
Reverse complement motif |
Consensus sequence: DDASCACGTGBTBVDD |
Consensus sequence: HHVBABCACGTGSTHD |
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|
|
|
Motif ID: |
UP00046 |
Motif name: |
Tcfe2a_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
7 |
Number of overlap: |
6 |
Similarity score: |
0.0342153 |
Alignment:
DHDBHGCACCTGBDDVB
------CACGTG-----
Original motif |
Reverse complement motif |
Consensus sequence: VBHHVCAGGTGCDVDHD |
Consensus sequence: DHDBHGCACCTGBDDVB |
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|
|
|
Motif ID: |
UP00097 |
Motif name: |
Mtf1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
6 |
Similarity score: |
0.0471928 |
Alignment:
HDYTTGCACACGDHBH
--------CACGTG--
Original motif |
Reverse complement motif |
Consensus sequence: DBDHCGTGTGCAAMDH |
Consensus sequence: HDYTTGCACACGDHBH |
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|
|
|
Motif ID: |
UP00249 |
Motif name: |
Nkx2-5 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
6 |
Similarity score: |
0.0482749 |
Alignment:
HDADCCACTTRAAWTT
-----CACGTG-----
Original motif |
Reverse complement motif |
Consensus sequence: HDADCCACTTRAAWTT |
Consensus sequence: AAWTTMAAGTGGHTDH |
|
|
|
|
Motif ID: |
UP00060 |
Motif name: |
Max_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
5 |
Number of overlap: |
6 |
Similarity score: |
0.0485437 |
Alignment:
BBGHCACGCGACDD
----CACGTG----
Original motif |
Reverse complement motif |
Consensus sequence: BBGHCACGCGACDD |
Consensus sequence: HDGTCGCGTGDCVB |
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|
|
|
Motif ID: |
UP00231 |
Motif name: |
Nkx2-2 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
7 |
Number of overlap: |
6 |
Similarity score: |
0.0497234 |
Alignment:
DVDTKTCAAGTGGKBDH
------CACGTG-----
Original motif |
Reverse complement motif |
Consensus sequence: HDVRCCACTTGARADBD |
Consensus sequence: DVDTKTCAAGTGGKBDH |
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|
|
|
Motif ID: |
UP00165 |
Motif name: |
Titf1 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
6 |
Similarity score: |
0.0498919 |
Alignment:
AAHYTCAAGTGGBTBV
-----CACGTG-----
Original motif |
Reverse complement motif |
Consensus sequence: BVABCCACTTGAMHTT |
Consensus sequence: AAHYTCAAGTGGBTBV |
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|
|
|
Motif ID: |
UP00147 |
Motif name: |
Nkx2-6 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
6 |
Similarity score: |
0.0544601 |
Alignment:
DDADCCACTTAAVHTT
-----CACGTG-----
Original motif |
Reverse complement motif |
Consensus sequence: DDADCCACTTAAVHTT |
Consensus sequence: AAHVTTAAGTGGHTDD |
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|
|
|
Dataset #: 2 |
Motif ID: 26 |
Motif name: ArntAhr |
Original motif |
Reverse complement motif |
Consensus sequence: YGCGTG |
Consensus sequence: CACGCM |
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|
|
|
Best Matches for Motif ID 26 (Highest to Lowest)
Motif ID: |
UP00400 |
Motif name: |
Zif268 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
7 |
Number of overlap: |
6 |
Similarity score: |
0 |
Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
------YGCGTG-----------
Original motif |
Reverse complement motif |
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV |
Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB |
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|
|
|
Motif ID: |
UP00002 |
Motif name: |
Sp4_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
6 |
Similarity score: |
0.00183587 |
Alignment:
HHDGBCACGCCTWDB
-----CACGCM----
Original motif |
Reverse complement motif |
Consensus sequence: BDWAGGCGTGBCHHD |
Consensus sequence: HHDGBCACGCCTWDB |
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|
|
|
Motif ID: |
UP00060 |
Motif name: |
Max_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
5 |
Number of overlap: |
6 |
Similarity score: |
0.00348048 |
Alignment:
HDGTCGCGTGDCVB
----YGCGTG----
Original motif |
Reverse complement motif |
Consensus sequence: BBGHCACGCGACDD |
Consensus sequence: HDGTCGCGTGDCVB |
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|
|
|
Motif ID: |
UP00527 |
Motif name: |
Foxn4_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
8 |
Number of overlap: |
6 |
Similarity score: |
0.00526158 |
Alignment:
TCDAMVBGACGCMAKDDDVBBD
-------CACGCM---------
Original motif |
Reverse complement motif |
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA |
Consensus sequence: TCDAMVBGACGCMAKDDDVBBD |
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|
|
|
Motif ID: |
UP00042 |
Motif name: |
Gm397_second |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
8 |
Number of overlap: |
6 |
Similarity score: |
0.00558171 |
Alignment:
HBGYGTGTGTGCVRVD
---YGCGTG-------
Original motif |
Reverse complement motif |
Consensus sequence: DVMVGCACACACKCVH |
Consensus sequence: HBGYGTGTGTGCVRVD |
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|
|
|
Motif ID: |
UP00097 |
Motif name: |
Mtf1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
6 |
Similarity score: |
0.00702416 |
Alignment:
HDYTTGCACACGDHBH
--------CACGCM--
Original motif |
Reverse complement motif |
Consensus sequence: DBDHCGTGTGCAAMDH |
Consensus sequence: HDYTTGCACACGDHBH |
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|
|
|
Motif ID: |
UP00526 |
Motif name: |
Foxn1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
8 |
Number of overlap: |
6 |
Similarity score: |
0.0123233 |
Alignment:
DDRMHBACGCGYGCGTDGBBDB
-------YGCGTG---------
Original motif |
Reverse complement motif |
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB |
Consensus sequence: BDVBCDACGCKCGCGTBHRKHD |
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|
|
|
Motif ID: |
UP00007 |
Motif name: |
Egr1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
6 |
Similarity score: |
0.0141579 |
Alignment:
HCCGCCCCCGCAHB
------CACGCM--
Original motif |
Reverse complement motif |
Consensus sequence: HCCGCCCCCGCAHB |
Consensus sequence: VHTGCGGGGGCGGH |
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|
|
|
Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
11 |
Number of overlap: |
6 |
Similarity score: |
0.0144485 |
Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
-------YGCGTG----------
Original motif |
Reverse complement motif |
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH |
Consensus sequence: HGDHVHKGACCACCCGGBGBGDB |
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|
|
|
Motif ID: |
UP00527 |
Motif name: |
Foxn4_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
8 |
Number of overlap: |
6 |
Similarity score: |
0.0172109 |
Alignment:
VHYTCCDWCCGCGTCMMTHWHV
---------YGCGTG-------
Original motif |
Reverse complement motif |
Consensus sequence: VDWDARRGACGCGGWHGGAKHV |
Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV |
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|
|
|
Dataset #: 2 |
Motif ID: 27 |
Motif name: E2F1 |
Original motif |
Reverse complement motif |
Consensus sequence: TTTSGCGC |
Consensus sequence: GCGCSAAA |
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|
|
|
Best Matches for Motif ID 27 (Highest to Lowest)
Motif ID: |
UP00001 |
Motif name: |
E2F2_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
7 |
Number of overlap: |
8 |
Similarity score: |
0 |
Alignment:
BBBDTTGGCGCCKWVVD
---TTTSGCGC------
Original motif |
Reverse complement motif |
Consensus sequence: HVBWYGGCGCCAADVBB |
Consensus sequence: BBBDTTGGCGCCKWVVD |
|
|
|
|
Motif ID: |
UP00003 |
Motif name: |
E2F3_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
8 |
Similarity score: |
0.00182028 |
Alignment:
HBHWYGGCGCCAMDVBB
------GCGCSAAA---
Original motif |
Reverse complement motif |
Consensus sequence: HBHWYGGCGCCAMDVBB |
Consensus sequence: BBBDYTGGCGCCKWDBD |
|
|
|
|
Motif ID: |
UP00072 |
Motif name: |
IRC900814_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
8 |
Similarity score: |
0.0237639 |
Alignment:
DDHTACGACAAAWDDB
----GCGCSAAA----
Original motif |
Reverse complement motif |
Consensus sequence: DDHTACGACAAAWDDB |
Consensus sequence: BHDWTTTGTCGTAHDD |
|
|
|
|
Motif ID: |
UP00003 |
Motif name: |
E2F3_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
8 |
Similarity score: |
0.0275636 |
Alignment:
WHSGCGCGCCHTDHB
-----GCGCSAAA--
Original motif |
Reverse complement motif |
Consensus sequence: VHDADGGCGCGCSHW |
Consensus sequence: WHSGCGCGCCHTDHB |
|
|
|
|
Motif ID: |
UP00065 |
Motif name: |
Zfp161_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
8 |
Similarity score: |
0.028109 |
Alignment:
DMMDGMGCGCGCGCHD
--------GCGCSAAA
Original motif |
Reverse complement motif |
Consensus sequence: DDGCGCGCGCRCHYRD |
Consensus sequence: DMMDGMGCGCGCGCHD |
|
|
|
|
Motif ID: |
UP00001 |
Motif name: |
E2F2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
8 |
Similarity score: |
0.0296302 |
Alignment:
VHDARGGCGCGCVHH
--TTTSGCGC-----
Original motif |
Reverse complement motif |
Consensus sequence: VHDARGGCGCGCVHH |
Consensus sequence: HHVGCGCGCCKTDHB |
|
|
|
|
Motif ID: |
UP00068 |
Motif name: |
Eomes_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
7 |
Number of overlap: |
8 |
Similarity score: |
0.0348969 |
Alignment:
BVHDAGGTGTGAAAHHH
------GCGCSAAA---
Original motif |
Reverse complement motif |
Consensus sequence: BVHDAGGTGTGAAAHHH |
Consensus sequence: HHHTTTCACACCTDHBV |
|
|
|
|
Motif ID: |
UP00011 |
Motif name: |
Irf6_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
8 |
Number of overlap: |
8 |
Similarity score: |
0.0368278 |
Alignment:
DHDBTKGTTTCGHTHDD
-------TTTSGCGC--
Original motif |
Reverse complement motif |
Consensus sequence: HDDAHCGAAACYAVDDD |
Consensus sequence: DHDBTKGTTTCGHTHDD |
|
|
|
|
Motif ID: |
UP00049 |
Motif name: |
Sp100_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
8 |
Similarity score: |
0.0383813 |
Alignment:
DWTTTCCGHHWAWD
-----GCGCSAAA-
Original motif |
Reverse complement motif |
Consensus sequence: DWTWHHCGGAAAWD |
Consensus sequence: DWTTTCCGHHWAWD |
|
|
|
|
Motif ID: |
UP00527 |
Motif name: |
Foxn4_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
8 |
Similarity score: |
0.0406002 |
Alignment:
TCDAMVBGACGCMAKDDDVBBD
--------GCGCSAAA------
Original motif |
Reverse complement motif |
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA |
Consensus sequence: TCDAMVBGACGCMAKDDDVBBD |
|
|
|
|
Dataset #: 2 |
Motif ID: 28 |
Motif name: Egr1 |
Original motif |
Reverse complement motif |
Consensus sequence: HGCGTGGGCGK |
Consensus sequence: YCGCCCACGCH |
|
|
|
|
Best Matches for Motif ID 28 (Highest to Lowest)
Motif ID: |
UP00400 |
Motif name: |
Zif268 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
7 |
Number of overlap: |
11 |
Similarity score: |
0 |
Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
------HGCGTGGGCGK------
Original motif |
Reverse complement motif |
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV |
Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB |
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|
|
|
Motif ID: |
UP00007 |
Motif name: |
Egr1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
11 |
Similarity score: |
0.00727533 |
Alignment:
HCCGCCCCCGCAHB
-YCGCCCACGCH--
Original motif |
Reverse complement motif |
Consensus sequence: HCCGCCCCCGCAHB |
Consensus sequence: VHTGCGGGGGCGGH |
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|
|
|
Motif ID: |
UP00538 |
Motif name: |
Gli1_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
11 |
Similarity score: |
0.0262579 |
Alignment:
MHHHWHYTMCCHCCCACVAABVH
---------YCGCCCACGCH---
Original motif |
Reverse complement motif |
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH |
Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY |
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|
|
|
Motif ID: |
UP00540 |
Motif name: |
Gli3_v015681_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
11 |
Similarity score: |
0.0297053 |
Alignment:
YBVDMGTGGGTGGTCKVVBVBBT
--HGCGTGGGCGK----------
Original motif |
Reverse complement motif |
Consensus sequence: ABBBBVVRGACCACCCACRDBBM |
Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT |
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|
|
|
Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
11 |
Similarity score: |
0.0318144 |
Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
----HGCGTGGGCGK--------
Original motif |
Reverse complement motif |
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB |
Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH |
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|
|
|
Motif ID: |
UP00002 |
Motif name: |
Sp4_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
11 |
Similarity score: |
0.0345009 |
Alignment:
BVVHAGGGGGCGRDHHB
--HGCGTGGGCGK----
Original motif |
Reverse complement motif |
Consensus sequence: BDHHMCGCCCCCTHVBB |
Consensus sequence: BVVHAGGGGGCGRDHHB |
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|
|
|
Motif ID: |
UP00538 |
Motif name: |
Gli1_v015681_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
11 |
Similarity score: |
0.0353502 |
Alignment:
BTBVTCVTGGGTGGTCMVVDVBB
---HGCGTGGGCGK---------
Original motif |
Reverse complement motif |
Consensus sequence: BBBDVVRGACCACCCAVGABBAB |
Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB |
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|
|
|
Motif ID: |
UP00007 |
Motif name: |
Egr1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
11 |
Similarity score: |
0.0360229 |
Alignment:
BHHDTCCCACTCBDBV
--YCGCCCACGCH---
Original motif |
Reverse complement motif |
Consensus sequence: BBHBGAGTGGGAHHDB |
Consensus sequence: BHHDTCCCACTCBDBV |
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|
|
|
Motif ID: |
UP00540 |
Motif name: |
Gli3_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
5 |
Number of overlap: |
11 |
Similarity score: |
0.0362743 |
Alignment:
VYWVVHCRCCACMCACGAHSBHH
--------YCGCCCACGCH----
Original motif |
Reverse complement motif |
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH |
Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV |
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|
|
|
Motif ID: |
UP00097 |
Motif name: |
Mtf1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
11 |
Similarity score: |
0.0386944 |
Alignment:
HDYTTGCACACGDHBH
---YCGCCCACGCH--
Original motif |
Reverse complement motif |
Consensus sequence: DBDHCGTGTGCAAMDH |
Consensus sequence: HDYTTGCACACGDHBH |
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|
|
|
Dataset #: 2 |
Motif ID: 29 |
Motif name: ESR1 |
Original motif |
Reverse complement motif |
Consensus sequence: VDBHMAGGTCACCCTGACCY |
Consensus sequence: MGGTCAGGGTGACCTRDBHV |
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|
|
|
Best Matches for Motif ID 29 (Highest to Lowest)
Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
20 |
Similarity score: |
0.0658405 |
Alignment:
BDDHVDKGCCACCCVCGCTDBVH
VDBHMAGGTCACCCTGACCY---
Original motif |
Reverse complement motif |
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB |
Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH |
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|
|
|
Motif ID: |
UP00098 |
Motif name: |
Rfx3_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
20 |
Similarity score: |
0.0689748 |
Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
VDBHMAGGTCACCCTGACCY---
Original motif |
Reverse complement motif |
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB |
Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB |
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|
|
|
Motif ID: |
UP00539 |
Motif name: |
Gli2_v015681_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
20 |
Similarity score: |
0.0701247 |
Alignment:
CBDMCMGGGTGGTCCHVBVBAH
MGGTCAGGGTGACCTRDBHV--
Original motif |
Reverse complement motif |
Consensus sequence: HTBVVVDGGACCACCCRGRDBG |
Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH |
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|
|
|
Motif ID: |
UP00539 |
Motif name: |
Gli2_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
20 |
Similarity score: |
0.0711267 |
Alignment:
HVGVSAGGAGGGTCYHHHHYVH
MGGTCAGGGTGACCTRDBHV--
Original motif |
Reverse complement motif |
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH |
Consensus sequence: DVMHHDHKGACCCTCCTSVCBH |
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|
|
|
Motif ID: |
UP00540 |
Motif name: |
Gli3_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
20 |
Similarity score: |
0.0742427 |
Alignment:
CVHBSCGGGTGGTCMHVHHCDH
-VDBHMAGGTCACCCTGACCY-
Original motif |
Reverse complement motif |
Consensus sequence: HDGHHBHRGACCACCCGSVDVG |
Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH |
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|
|
|
Motif ID: |
UP00540 |
Motif name: |
Gli3_v015681_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
20 |
Similarity score: |
0.0747053 |
Alignment:
ABBBBVVRGACCACCCACRDBBM
--VDBHMAGGTCACCCTGACCY-
Original motif |
Reverse complement motif |
Consensus sequence: ABBBBVVRGACCACCCACRDBBM |
Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT |
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|
|
|
Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
20 |
Similarity score: |
0.0749165 |
Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
---VDBHMAGGTCACCCTGACCY
Original motif |
Reverse complement motif |
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH |
Consensus sequence: HGDHVHKGACCACCCGGBGBGDB |
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|
|
|
Motif ID: |
UP00538 |
Motif name: |
Gli1_v015681_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
20 |
Similarity score: |
0.0759307 |
Alignment:
BBBDVVRGACCACCCAVGABBAB
-VDBHMAGGTCACCCTGACCY--
Original motif |
Reverse complement motif |
Consensus sequence: BBBDVVRGACCACCCAVGABBAB |
Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB |
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|
|
|
Motif ID: |
UP00400 |
Motif name: |
Zif268 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
20 |
Similarity score: |
0.0762689 |
Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
-MGGTCAGGGTGACCTRDBHV--
Original motif |
Reverse complement motif |
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV |
Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB |
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|
|
|
Motif ID: |
UP00034 |
Motif name: |
Sox7_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
20 |
Similarity score: |
0.0780113 |
Alignment:
GTVBDAATTGTVTGHGDDHKVB
VDBHMAGGTCACCCTGACCY--
Original motif |
Reverse complement motif |
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB |
Consensus sequence: VVYDDDCHCAVACAATTDBVAC |
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|
|
|
Dataset #: 2 |
Motif ID: 30 |
Motif name: ESR2 |
Original motif |
Reverse complement motif |
Consensus sequence: VHRGGTCABDBTGMCCTB |
Consensus sequence: BAGGYCABHBTGACCKHV |
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|
|
|
Best Matches for Motif ID 30 (Highest to Lowest)
Motif ID: |
UP00034 |
Motif name: |
Sox7_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
18 |
Similarity score: |
0.0443894 |
Alignment:
GTVBDAATTGTVTGHGDDHKVB
---VHRGGTCABDBTGMCCTB-
Original motif |
Reverse complement motif |
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB |
Consensus sequence: VVYDDDCHCAVACAATTDBVAC |
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|
|
|
Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
18 |
Similarity score: |
0.049219 |
Alignment:
BDDHVDKGCCACCCVCGCTDBVH
---VHRGGTCABDBTGMCCTB--
Original motif |
Reverse complement motif |
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB |
Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH |
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|
|
|
Motif ID: |
UP00050 |
Motif name: |
Bhlhb2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
18 |
Similarity score: |
0.0509182 |
Alignment:
DDHBHBSTCACGTGAHBBDHHM
--VHRGGTCABDBTGMCCTB--
Original motif |
Reverse complement motif |
Consensus sequence: RDHDBVDTCACGTGASBHVHDH |
Consensus sequence: DDHBHBSTCACGTGAHBBDHHM |
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|
|
|
Motif ID: |
UP00540 |
Motif name: |
Gli3_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
18 |
Similarity score: |
0.0527075 |
Alignment:
DVTTVVCVYGGHGGYCHHDMYB
-BAGGYCABHBTGACCKHV---
Original motif |
Reverse complement motif |
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB |
Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH |
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|
|
|
Motif ID: |
UP00034 |
Motif name: |
Sox7_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
18 |
Similarity score: |
0.0541044 |
Alignment:
WBHHHHHMDATTGTTHDHDVHH
-BAGGYCABHBTGACCKHV---
Original motif |
Reverse complement motif |
Consensus sequence: HHBDHDDAACAATDRHHHHHBW |
Consensus sequence: WBHHHHHMDATTGTTHDHDVHH |
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|
|
|
Motif ID: |
UP00098 |
Motif name: |
Rfx3_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
18 |
Similarity score: |
0.0541108 |
Alignment:
VCTBHBVCTTGGWTACVVVVVDB
--BAGGYCABHBTGACCKHV---
Original motif |
Reverse complement motif |
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB |
Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB |
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|
|
|
Motif ID: |
UP00527 |
Motif name: |
Foxn4_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
18 |
Similarity score: |
0.0543733 |
Alignment:
VDWDARRGACGCGGWHGGAKHV
---VHRGGTCABDBTGMCCTB-
Original motif |
Reverse complement motif |
Consensus sequence: VDWDARRGACGCGGWHGGAKHV |
Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV |
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|
|
|
Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
5 |
Number of overlap: |
18 |
Similarity score: |
0.0548087 |
Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
-BAGGYCABHBTGACCKHV----
Original motif |
Reverse complement motif |
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH |
Consensus sequence: HGDHVHKGACCACCCGGBGBGDB |
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|
|
|
Motif ID: |
UP00528 |
Motif name: |
Foxm1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
18 |
Similarity score: |
0.055453 |
Alignment:
DCATDBTGHGCATKMTTBRSWR
----VHRGGTCABDBTGMCCTB
Original motif |
Reverse complement motif |
Consensus sequence: MWSMBAARRATGCDCABHATGD |
Consensus sequence: DCATDBTGHGCATKMTTBRSWR |
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|
|
|
Motif ID: |
UP00032 |
Motif name: |
Gata3_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
18 |
Similarity score: |
0.0566426 |
Alignment:
HBHDVBWGATHBTATCRVBHHH
-VHRGGTCABDBTGMCCTB---
Original motif |
Reverse complement motif |
Consensus sequence: HBHDVBWGATHBTATCRVBHHH |
Consensus sequence: HHHBBMGATAVHATCWVVDHVH |
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|
|
|
Dataset #: 2 |
Motif ID: 31 |
Motif name: Esrrb |
Original motif |
Reverse complement motif |
Consensus sequence: CACGTG |
Consensus sequence: CACGTG |
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|
|
|
Best Matches for Motif ID 31 (Highest to Lowest)
Motif ID: |
UP00050 |
Motif name: |
Bhlhb2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
6 |
Similarity score: |
0 |
Alignment:
RDHDBVDTCACGTGASBHVHDH
--------CACGTG--------
Original motif |
Reverse complement motif |
Consensus sequence: RDHDBVDTCACGTGASBHVHDH |
Consensus sequence: DDHBHBSTCACGTGAHBBDHHM |
|
|
|
|
Motif ID: |
UP00050 |
Motif name: |
Bhlhb2_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
9 |
Number of overlap: |
6 |
Similarity score: |
0.0026425 |
Alignment:
ACHRBHDTCCACGTGYAHHBMHM
---------CACGTG--------
Original motif |
Reverse complement motif |
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT |
Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM |
|
|
|
|
Motif ID: |
UP00060 |
Motif name: |
Max_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
6 |
Similarity score: |
0.0044422 |
Alignment:
DDASCACGTGBTBVDD
----CACGTG------
Original motif |
Reverse complement motif |
Consensus sequence: DDASCACGTGBTBVDD |
Consensus sequence: HHVBABCACGTGSTHD |
|
|
|
|
Motif ID: |
UP00046 |
Motif name: |
Tcfe2a_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
7 |
Number of overlap: |
6 |
Similarity score: |
0.0342153 |
Alignment:
DHDBHGCACCTGBDDVB
------CACGTG-----
Original motif |
Reverse complement motif |
Consensus sequence: VBHHVCAGGTGCDVDHD |
Consensus sequence: DHDBHGCACCTGBDDVB |
|
|
|
|
Motif ID: |
UP00097 |
Motif name: |
Mtf1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
9 |
Number of overlap: |
6 |
Similarity score: |
0.0471928 |
Alignment:
HDYTTGCACACGDHBH
--------CACGTG--
Original motif |
Reverse complement motif |
Consensus sequence: DBDHCGTGTGCAAMDH |
Consensus sequence: HDYTTGCACACGDHBH |
|
|
|
|
Motif ID: |
UP00249 |
Motif name: |
Nkx2-5 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
6 |
Similarity score: |
0.0482749 |
Alignment:
HDADCCACTTRAAWTT
-----CACGTG-----
Original motif |
Reverse complement motif |
Consensus sequence: HDADCCACTTRAAWTT |
Consensus sequence: AAWTTMAAGTGGHTDH |
|
|
|
|
Motif ID: |
UP00060 |
Motif name: |
Max_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
5 |
Number of overlap: |
6 |
Similarity score: |
0.0485437 |
Alignment:
BBGHCACGCGACDD
----CACGTG----
Original motif |
Reverse complement motif |
Consensus sequence: BBGHCACGCGACDD |
Consensus sequence: HDGTCGCGTGDCVB |
|
|
|
|
Motif ID: |
UP00231 |
Motif name: |
Nkx2-2 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
7 |
Number of overlap: |
6 |
Similarity score: |
0.0497234 |
Alignment:
DVDTKTCAAGTGGKBDH
------CACGTG-----
Original motif |
Reverse complement motif |
Consensus sequence: HDVRCCACTTGARADBD |
Consensus sequence: DVDTKTCAAGTGGKBDH |
|
|
|
|
Motif ID: |
UP00165 |
Motif name: |
Titf1 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
6 |
Similarity score: |
0.0498919 |
Alignment:
AAHYTCAAGTGGBTBV
-----CACGTG-----
Original motif |
Reverse complement motif |
Consensus sequence: BVABCCACTTGAMHTT |
Consensus sequence: AAHYTCAAGTGGBTBV |
|
|
|
|
Motif ID: |
UP00147 |
Motif name: |
Nkx2-6 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
6 |
Similarity score: |
0.0544601 |
Alignment:
DDADCCACTTAAVHTT
-----CACGTG-----
Original motif |
Reverse complement motif |
Consensus sequence: DDADCCACTTAAVHTT |
Consensus sequence: AAHVTTAAGTGGHTDD |
|
|
|
|
Dataset #: 2 |
Motif ID: 32 |
Motif name: EWSR1-FLI1 |
Original motif |
Reverse complement motif |
Consensus sequence: GGAAGGAAGGAAGGAAGG |
Consensus sequence: CCTTCCTTCCTTCCTTCC |
|
|
|
|
Best Matches for Motif ID 32 (Highest to Lowest)
Motif ID: |
UP00419 |
Motif name: |
Spic |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
14 |
Similarity score: |
0.0442834 |
Alignment:
----VAAAGMGGAAGTWD
GGAAGGAAGGAAGGAAGG--
Original motif |
Reverse complement motif |
Consensus sequence: VAAAGMGGAAGTWD |
Consensus sequence: DWACTTCCRCTTTB |
|
|
|
|
Motif ID: |
UP00055 |
Motif name: |
Hbp1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
5 |
Number of overlap: |
14 |
Similarity score: |
0.0466226 |
Alignment:
----VDHATTCATTSAWDDH
CCTTCCTTCCTTCCTTCC----
Original motif |
Reverse complement motif |
Consensus sequence: HHDWTSAATGAATDDB |
Consensus sequence: VDHATTCATTSAWDDH |
|
|
|
|
Motif ID: |
UP00035 |
Motif name: |
Hic1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
14 |
Similarity score: |
0.047846 |
Alignment:
DBBATGCCAACCHVHH----
----GGAAGGAAGGAAGGAAGG
Original motif |
Reverse complement motif |
Consensus sequence: DBBATGCCAACCHVHH |
Consensus sequence: DDBHGGTTGGCATVBD |
|
|
|
|
Motif ID: |
UP00090 |
Motif name: |
Elf3_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
13 |
Similarity score: |
0.539121 |
Alignment:
-----TDAMTTCCYYDTD
CCTTCCTTCCTTCCTTCC---
Original motif |
Reverse complement motif |
Consensus sequence: DAHMMGGAARTDA |
Consensus sequence: TDAMTTCCYYDTD |
|
|
|
|
Motif ID: |
UP00062 |
Motif name: |
Sox4_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
13 |
Similarity score: |
0.547912 |
Alignment:
HHBBMCTTTGTTHDDBH-----
----CCTTCCTTCCTTCCTTCC
Original motif |
Reverse complement motif |
Consensus sequence: HBDDDAACAAAGRVBHH |
Consensus sequence: HHBBMCTTTGTTHDDBH |
|
|
|
|
Motif ID: |
UP00021 |
Motif name: |
Zfp281_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
13 |
Similarity score: |
0.548284 |
Alignment:
DBCCCCCCCCCCMYC-----
-----GGAAGGAAGGAAGGAAGG
Original motif |
Reverse complement motif |
Consensus sequence: DBCCCCCCCCCCMYC |
Consensus sequence: GKRGGGGGGGGGGBD |
|
|
|
|
Motif ID: |
UP00030 |
Motif name: |
Sox11_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
13 |
Similarity score: |
0.54837 |
Alignment:
HHBTMCTTTGTTMDDVH-----
----CCTTCCTTCCTTCCTTCC
Original motif |
Reverse complement motif |
Consensus sequence: HBDDRAACAAAGRABHH |
Consensus sequence: HHBTMCTTTGTTMDDVH |
|
|
|
|
Motif ID: |
UP00539 |
Motif name: |
Gli2_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
7 |
Number of overlap: |
12 |
Similarity score: |
1.04069 |
Alignment:
HVGVSAGGAGGGTCYHHHHYVH------
------GGAAGGAAGGAAGGAAGG----
Original motif |
Reverse complement motif |
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH |
Consensus sequence: DVMHHDHKGACCCTCCTSVCBH |
|
|
|
|
Motif ID: |
UP00409 |
Motif name: |
Elf5 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
12 |
Similarity score: |
1.04159 |
Alignment:
------BWAHSMGGAAGTWD
GGAAGGAAGGAAGGAAGG--
Original motif |
Reverse complement motif |
Consensus sequence: BWAHSMGGAAGTWD |
Consensus sequence: DWACTTCCRSDTWV |
|
|
|
|
Motif ID: |
UP00056 |
Motif name: |
Rfx4_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
7 |
Number of overlap: |
12 |
Similarity score: |
1.04349 |
Alignment:
------HHBCHTRGWTACVVH
GGAAGGAAGGAAGGAAGG------
Original motif |
Reverse complement motif |
Consensus sequence: HHBCHTRGWTACVVH |
Consensus sequence: HVVGTAWCKADGBHH |
|
|
|
|
Dataset #: 2 |
Motif ID: 33 |
Motif name: HIF1AARNT |
Original motif |
Reverse complement motif |
Consensus sequence: VBACGTGV |
Consensus sequence: VCACGTBV |
|
|
|
|
Best Matches for Motif ID 33 (Highest to Lowest)
Motif ID: |
UP00097 |
Motif name: |
Mtf1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
8 |
Similarity score: |
0 |
Alignment:
HDYTTGCACACGDHBH
-------VCACGTBV-
Original motif |
Reverse complement motif |
Consensus sequence: DBDHCGTGTGCAAMDH |
Consensus sequence: HDYTTGCACACGDHBH |
|
|
|
|
Motif ID: |
UP00060 |
Motif name: |
Max_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
8 |
Similarity score: |
0.000574345 |
Alignment:
HHVBABCACGTGSTHD
-----VCACGTBV---
Original motif |
Reverse complement motif |
Consensus sequence: DDASCACGTGBTBVDD |
Consensus sequence: HHVBABCACGTGSTHD |
|
|
|
|
Motif ID: |
UP00050 |
Motif name: |
Bhlhb2_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
9 |
Number of overlap: |
8 |
Similarity score: |
0.00642455 |
Alignment:
YDYBDHTMCACGTGGADDBMDGT
-------VBACGTGV--------
Original motif |
Reverse complement motif |
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT |
Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM |
|
|
|
|
Motif ID: |
UP00084 |
Motif name: |
Gmeb1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
5 |
Number of overlap: |
8 |
Similarity score: |
0.0131171 |
Alignment:
BVVDVRYACGTRYVBHB
-----VBACGTGV----
Original motif |
Reverse complement motif |
Consensus sequence: BHBBKKACGTMMVDBVB |
Consensus sequence: BVVDVRYACGTRYVBHB |
|
|
|
|
Motif ID: |
UP00050 |
Motif name: |
Bhlhb2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
8 |
Number of overlap: |
8 |
Similarity score: |
0.014006 |
Alignment:
RDHDBVDTCACGTGASBHVHDH
-------VCACGTBV-------
Original motif |
Reverse complement motif |
Consensus sequence: RDHDBVDTCACGTGASBHVHDH |
Consensus sequence: DDHBHBSTCACGTGAHBBDHHM |
|
|
|
|
Motif ID: |
UP00046 |
Motif name: |
Tcfe2a_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
8 |
Similarity score: |
0.0184296 |
Alignment:
VBHHVCAGGTGCDVDHD
----VBACGTGV-----
Original motif |
Reverse complement motif |
Consensus sequence: VBHHVCAGGTGCDVDHD |
Consensus sequence: DHDBHGCACCTGBDDVB |
|
|
|
|
Motif ID: |
UP00068 |
Motif name: |
Eomes_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
8 |
Similarity score: |
0.0188154 |
Alignment:
VVBVCKACACCTHVBV
------VCACGTBV--
Original motif |
Reverse complement motif |
Consensus sequence: VBVDAGGTGTYGVBBV |
Consensus sequence: VVBVCKACACCTHVBV |
|
|
|
|
Motif ID: |
UP00026 |
Motif name: |
Zscan4_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
9 |
Number of overlap: |
8 |
Similarity score: |
0.0189568 |
Alignment:
DHVDTGTGCACAYAHDH
-VBACGTGV--------
Original motif |
Reverse complement motif |
Consensus sequence: DHVDTGTGCACAYAHDH |
Consensus sequence: HDHTMTGTGCACADVHD |
|
|
|
|
Motif ID: |
UP00042 |
Motif name: |
Gm397_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
8 |
Number of overlap: |
8 |
Similarity score: |
0.0198987 |
Alignment:
HHRTATGTGCACATHHD
--VBACGTGV-------
Original motif |
Reverse complement motif |
Consensus sequence: HHDATGTGCACATAMDH |
Consensus sequence: HHRTATGTGCACATHHD |
|
|
|
|
Motif ID: |
UP00060 |
Motif name: |
Max_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
8 |
Similarity score: |
0.021967 |
Alignment:
BBGHCACGCGACDD
---VCACGTBV---
Original motif |
Reverse complement motif |
Consensus sequence: BBGHCACGCGACDD |
Consensus sequence: HDGTCGCGTGDCVB |
|
|
|
|
Dataset #: 2 |
Motif ID: 34 |
Motif name: HNF4A |
Original motif |
Reverse complement motif |
Consensus sequence: RGGBCAAAGKYCA |
Consensus sequence: TGMYCTTTGBCCK |
|
|
|
|
Best Matches for Motif ID 34 (Highest to Lowest)
Motif ID: |
UP00058 |
Motif name: |
Tcf3_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
13 |
Similarity score: |
0.0357776 |
Alignment:
HHHASATCAAAGVRHHH
---RGGBCAAAGKYCA-
Original motif |
Reverse complement motif |
Consensus sequence: HHHASATCAAAGVRHHH |
Consensus sequence: HHHKVCTTTGATSTHHH |
|
|
|
|
Motif ID: |
UP00054 |
Motif name: |
Tcf7_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
13 |
Similarity score: |
0.0357792 |
Alignment:
BHHASATCAAAGGAHHH
---RGGBCAAAGKYCA-
Original motif |
Reverse complement motif |
Consensus sequence: BHHASATCAAAGGAHHH |
Consensus sequence: HHHTCCTTTGATSTHHV |
|
|
|
|
Motif ID: |
UP00067 |
Motif name: |
Lef1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
13 |
Similarity score: |
0.0359011 |
Alignment:
VDDAGATCAAAGGKDDD
---RGGBCAAAGKYCA-
Original motif |
Reverse complement motif |
Consensus sequence: DDDYCCTTTGATCTDDV |
Consensus sequence: VDDAGATCAAAGGKDDD |
|
|
|
|
Motif ID: |
UP00083 |
Motif name: |
Tcf7l2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
13 |
Similarity score: |
0.0360786 |
Alignment:
BDDASATCAAAGGMDDD
---RGGBCAAAGKYCA-
Original motif |
Reverse complement motif |
Consensus sequence: DDDYCCTTTGATSTDDV |
Consensus sequence: BDDASATCAAAGGMDDD |
|
|
|
|
Motif ID: |
UP00046 |
Motif name: |
Tcfe2a_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
13 |
Similarity score: |
0.0405764 |
Alignment:
HVDDVCAGATGKYHBBV
-RGGBCAAAGKYCA---
Original motif |
Reverse complement motif |
Consensus sequence: HVDDVCAGATGKYHBBV |
Consensus sequence: VBBDMYCATCTGVHHBH |
|
|
|
|
Motif ID: |
UP00062 |
Motif name: |
Sox4_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
13 |
Similarity score: |
0.0409915 |
Alignment:
HHBBMCTTTGTTHDDBH
-TGMYCTTTGBCCK---
Original motif |
Reverse complement motif |
Consensus sequence: HBDDDAACAAAGRVBHH |
Consensus sequence: HHBBMCTTTGTTHDDBH |
|
|
|
|
Motif ID: |
UP00101 |
Motif name: |
Sox12_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
13 |
Similarity score: |
0.0413218 |
Alignment:
HDTMCTTTGTSTVDBB
TGMYCTTTGBCCK---
Original motif |
Reverse complement motif |
Consensus sequence: VVDBASACAAAGRADH |
Consensus sequence: HDTMCTTTGTSTVDBB |
|
|
|
|
Motif ID: |
UP00030 |
Motif name: |
Sox11_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
13 |
Similarity score: |
0.0421105 |
Alignment:
HHBTMCTTTGTTMDDVH
-TGMYCTTTGBCCK---
Original motif |
Reverse complement motif |
Consensus sequence: HBDDRAACAAAGRABHH |
Consensus sequence: HHBTMCTTTGTTMDDVH |
|
|
|
|
Motif ID: |
UP00086 |
Motif name: |
Irf3_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
13 |
Similarity score: |
0.0442004 |
Alignment:
DDAGAADGGDSCDV
RGGBCAAAGKYCA-
Original motif |
Reverse complement motif |
Consensus sequence: DDAGAADGGDSCDV |
Consensus sequence: BHGSDCCDTTCTHH |
|
|
|
|
Motif ID: |
UP00082 |
Motif name: |
Zfp187_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
13 |
Similarity score: |
0.0446884 |
Alignment:
DDGMCCTBGTCCHYHV
---RGGBCAAAGKYCA
Original motif |
Reverse complement motif |
Consensus sequence: DDGMCCTBGTCCHYHV |
Consensus sequence: VHMDGGACVAGGRCDH |
|
|
|
|
Dataset #: 2 |
Motif ID: 35 |
Motif name: INSM1 |
Original motif |
Reverse complement motif |
Consensus sequence: TGYCAGGGGGCR |
Consensus sequence: MGCCCCCTGMCA |
|
|
|
|
Best Matches for Motif ID 35 (Highest to Lowest)
Motif ID: |
UP00022 |
Motif name: |
Zfp740_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
12 |
Similarity score: |
0.00085101 |
Alignment:
HVKDCCGGGGGGWADDD
--TGYCAGGGGGCR---
Original motif |
Reverse complement motif |
Consensus sequence: DDDTWCCCCCCGGDRVH |
Consensus sequence: HVKDCCGGGGGGWADDD |
|
|
|
|
Motif ID: |
UP00002 |
Motif name: |
Sp4_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
12 |
Similarity score: |
0.00406431 |
Alignment:
BVVHAGGGGGCGRDHHB
TGYCAGGGGGCR-----
Original motif |
Reverse complement motif |
Consensus sequence: BDHHMCGCCCCCTHVBB |
Consensus sequence: BVVHAGGGGGCGRDHHB |
|
|
|
|
Motif ID: |
UP00047 |
Motif name: |
Zbtb7b_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
12 |
Similarity score: |
0.00486866 |
Alignment:
VHWTTHGGGGGGVDD
--TGYCAGGGGGCR-
Original motif |
Reverse complement motif |
Consensus sequence: DDVCCCCCCHAAWHB |
Consensus sequence: VHWTTHGGGGGGVDD |
|
|
|
|
Motif ID: |
UP00079 |
Motif name: |
Esrra_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
12 |
Similarity score: |
0.00862553 |
Alignment:
VKBBAGGGGTCAHDBBH
TGYCAGGGGGCR-----
Original motif |
Reverse complement motif |
Consensus sequence: VKBBAGGGGTCAHDBBH |
Consensus sequence: DBBHHTGACCCCTBBYV |
|
|
|
|
Motif ID: |
UP00024 |
Motif name: |
Glis2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
12 |
Similarity score: |
0.00936306 |
Alignment:
HKBBGGGGGGTCVHHH
-TGYCAGGGGGCR---
Original motif |
Reverse complement motif |
Consensus sequence: HHHVGACCCCCCVBRD |
Consensus sequence: HKBBGGGGGGTCVHHH |
|
|
|
|
Motif ID: |
UP00066 |
Motif name: |
Hnf4a_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
12 |
Similarity score: |
0.0123592 |
Alignment:
BDBVMGGGGTCAABHDV
TGYCAGGGGGCR-----
Original motif |
Reverse complement motif |
Consensus sequence: BDBVMGGGGTCAABHDV |
Consensus sequence: BHHVTTGACCCCYVVDB |
|
|
|
|
Motif ID: |
UP00007 |
Motif name: |
Egr1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
12 |
Similarity score: |
0.0155167 |
Alignment:
HCCGCCCCCGCAHB
--MGCCCCCTGMCA
Original motif |
Reverse complement motif |
Consensus sequence: HCCGCCCCCGCAHB |
Consensus sequence: VHTGCGGGGGCGGH |
|
|
|
|
Motif ID: |
UP00022 |
Motif name: |
Zfp740_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
12 |
Similarity score: |
0.0176638 |
Alignment:
HVBCCCCCCCCMHHHB
---MGCCCCCTGMCA-
Original motif |
Reverse complement motif |
Consensus sequence: HVBCCCCCCCCMHHHB |
Consensus sequence: BHHDYGGGGGGGGBVD |
|
|
|
|
Motif ID: |
UP00043 |
Motif name: |
Bcl6b_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
5 |
Number of overlap: |
12 |
Similarity score: |
0.0182432 |
Alignment:
BHHHWGGGGCGGBBVH
TGYCAGGGGGCR----
Original motif |
Reverse complement motif |
Consensus sequence: HBBBCCGCCCCWHHHV |
Consensus sequence: BHHHWGGGGCGGBBVH |
|
|
|
|
Motif ID: |
UP00070 |
Motif name: |
Gcm1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
12 |
Similarity score: |
0.0200587 |
Alignment:
BYMBKCCCCTATDVBHD
--MGCCCCCTGMCA---
Original motif |
Reverse complement motif |
Consensus sequence: DDBVHATAGGGGRBRMB |
Consensus sequence: BYMBKCCCCTATDVBHD |
|
|
|
|
Dataset #: 2 |
Motif ID: 36 |
Motif name: Klf4 |
Original motif |
Reverse complement motif |
Consensus sequence: DGGGYGKGGC |
Consensus sequence: GCCYCMCCCD |
|
|
|
|
Best Matches for Motif ID 36 (Highest to Lowest)
Motif ID: |
UP00093 |
Motif name: |
Klf7_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
10 |
Similarity score: |
0 |
Alignment:
DHHDGGGCGRGGKHBH
---DGGGYGKGGC---
Original motif |
Reverse complement motif |
Consensus sequence: HBDRCCMCGCCCHHHD |
Consensus sequence: DHHDGGGCGRGGKHBH |
|
|
|
|
Motif ID: |
UP00021 |
Motif name: |
Zfp281_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
10 |
Similarity score: |
0.0153308 |
Alignment:
DBCCCCCCCCCCMYC
---GCCYCMCCCD--
Original motif |
Reverse complement motif |
Consensus sequence: DBCCCCCCCCCCMYC |
Consensus sequence: GKRGGGGGGGGGGBD |
|
|
|
|
Motif ID: |
UP00002 |
Motif name: |
Sp4_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
10 |
Similarity score: |
0.0186791 |
Alignment:
BDWAGGCGTGBCHHD
--DGGGYGKGGC---
Original motif |
Reverse complement motif |
Consensus sequence: BDWAGGCGTGBCHHD |
Consensus sequence: HHDGBCACGCCTWDB |
|
|
|
|
Motif ID: |
UP00022 |
Motif name: |
Zfp740_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
10 |
Similarity score: |
0.0218399 |
Alignment:
HVBCCCCCCCCMHHHB
--GCCYCMCCCD----
Original motif |
Reverse complement motif |
Consensus sequence: HVBCCCCCCCCMHHHB |
Consensus sequence: BHHDYGGGGGGGGBVD |
|
|
|
|
Motif ID: |
UP00007 |
Motif name: |
Egr1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
10 |
Similarity score: |
0.0249586 |
Alignment:
HCCGCCCCCGCAHB
GCCYCMCCCD----
Original motif |
Reverse complement motif |
Consensus sequence: HCCGCCCCCGCAHB |
Consensus sequence: VHTGCGGGGGCGGH |
|
|
|
|
Motif ID: |
UP00002 |
Motif name: |
Sp4_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
7 |
Number of overlap: |
10 |
Similarity score: |
0.0299159 |
Alignment:
BVVHAGGGGGCGRDHHB
------DGGGYGKGGC-
Original motif |
Reverse complement motif |
Consensus sequence: BDHHMCGCCCCCTHVBB |
Consensus sequence: BVVHAGGGGGCGRDHHB |
|
|
|
|
Motif ID: |
UP00000 |
Motif name: |
Smad3_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
10 |
Similarity score: |
0.0308595 |
Alignment:
BHBHDTGGCGGGGBDHD
----DGGGYGKGGC---
Original motif |
Reverse complement motif |
Consensus sequence: DHHBCCCCGCCAHHBHB |
Consensus sequence: BHBHDTGGCGGGGBDHD |
|
|
|
|
Motif ID: |
UP00047 |
Motif name: |
Zbtb7b_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
10 |
Similarity score: |
0.0345891 |
Alignment:
VHWTTHGGGGGGVDD
GCCYCMCCCD-----
Original motif |
Reverse complement motif |
Consensus sequence: DDVCCCCCCHAAWHB |
Consensus sequence: VHWTTHGGGGGGVDD |
|
|
|
|
Motif ID: |
UP00043 |
Motif name: |
Bcl6b_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
10 |
Similarity score: |
0.0346735 |
Alignment:
HBBBCCGCCCCWHHHV
--GCCYCMCCCD----
Original motif |
Reverse complement motif |
Consensus sequence: HBBBCCGCCCCWHHHV |
Consensus sequence: BHHHWGGGGCGGBBVH |
|
|
|
|
Motif ID: |
UP00538 |
Motif name: |
Gli1_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
8 |
Number of overlap: |
10 |
Similarity score: |
0.0351496 |
Alignment:
MHHHWHYTMCCHCCCACVAABVH
------GCCYCMCCCD-------
Original motif |
Reverse complement motif |
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH |
Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY |
|
|
|
|
Dataset #: 2 |
Motif ID: 37 |
Motif name: MIZF |
Original motif |
Reverse complement motif |
Consensus sequence: BAACGTCCGC |
Consensus sequence: GCGGACGTTV |
|
|
|
|
Best Matches for Motif ID 37 (Highest to Lowest)
Motif ID: |
UP00419 |
Motif name: |
Spic |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
10 |
Similarity score: |
0 |
Alignment:
DWACTTCCRCTTTB
BAACGTCCGC----
Original motif |
Reverse complement motif |
Consensus sequence: VAAAGMGGAAGTWD |
Consensus sequence: DWACTTCCRCTTTB |
|
|
|
|
Motif ID: |
UP00409 |
Motif name: |
Elf5 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
10 |
Similarity score: |
0.00379999 |
Alignment:
BWAHSMGGAAGTWD
BAACGTCCGC----
Original motif |
Reverse complement motif |
Consensus sequence: BWAHSMGGAAGTWD |
Consensus sequence: DWACTTCCRSDTWV |
|
|
|
|
Motif ID: |
UP00413 |
Motif name: |
Elf4 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
5 |
Number of overlap: |
10 |
Similarity score: |
0.0124101 |
Alignment:
DBBHACTTCCGGKWTH
--BAACGTCCGC----
Original motif |
Reverse complement motif |
Consensus sequence: DBBHACTTCCGGKWTH |
Consensus sequence: HAWYCCGGAAGTHBBD |
|
|
|
|
Motif ID: |
UP00404 |
Motif name: |
Elf2 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
10 |
Similarity score: |
0.0128348 |
Alignment:
DBBHACTTCCGGDWDB
--BAACGTCCGC----
Original motif |
Reverse complement motif |
Consensus sequence: DBBHACTTCCGGDWDB |
Consensus sequence: BDWDCCGGAAGTHBBD |
|
|
|
|
Motif ID: |
UP00085 |
Motif name: |
Sfpi1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
10 |
Similarity score: |
0.0141516 |
Alignment:
BDAWGVGGAAGTDH
BAACGTCCGC----
Original motif |
Reverse complement motif |
Consensus sequence: BDAWGVGGAAGTDH |
Consensus sequence: HDACTTCCBCWTDV |
|
|
|
|
Motif ID: |
UP00423 |
Motif name: |
Gm5454 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
10 |
Similarity score: |
0.0144665 |
Alignment:
DVHACCGGAAGTHDDV
----GCGGACGTTV--
Original motif |
Reverse complement motif |
Consensus sequence: VDHHACTTCCGGTHVH |
Consensus sequence: DVHACCGGAAGTHDDV |
|
|
|
|
Motif ID: |
UP00412 |
Motif name: |
Etv5 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
10 |
Similarity score: |
0.0155825 |
Alignment:
DHHACCGGAWGTTDDV
----GCGGACGTTV--
Original motif |
Reverse complement motif |
Consensus sequence: VDHAACWTCCGGTHHH |
Consensus sequence: DHHACCGGAWGTTDDV |
|
|
|
|
Motif ID: |
UP00015 |
Motif name: |
Ehf_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
10 |
Similarity score: |
0.0162018 |
Alignment:
VBDABCCGGAAGTDD
-----GCGGACGTTV
Original motif |
Reverse complement motif |
Consensus sequence: VBDABCCGGAAGTDD |
Consensus sequence: DDACTTCCGGBTHBB |
|
|
|
|
Motif ID: |
UP00418 |
Motif name: |
Etv6 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
10 |
Similarity score: |
0.0171234 |
Alignment:
DVHBTACTTCCGGHTHB
---BAACGTCCGC----
Original motif |
Reverse complement motif |
Consensus sequence: DVHBTACTTCCGGHTHB |
Consensus sequence: BHAHCCGGAAGTABDVD |
|
|
|
|
Motif ID: |
UP00421 |
Motif name: |
Etv1 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
10 |
Similarity score: |
0.0184147 |
Alignment:
MVHBACCGGAAGTVDVH
-----GCGGACGTTV--
Original motif |
Reverse complement motif |
Consensus sequence: MVHBACCGGAAGTVDVH |
Consensus sequence: HBDBACTTCCGGTBHVY |
|
|
|
|
Dataset #: 2 |
Motif ID: 38 |
Motif name: Myc |
Original motif |
Reverse complement motif |
Consensus sequence: VGCACGTGGH |
Consensus sequence: DCCACGTGCV |
|
|
|
|
Best Matches for Motif ID 38 (Highest to Lowest)
Motif ID: |
UP00060 |
Motif name: |
Max_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
10 |
Similarity score: |
0 |
Alignment:
DDASCACGTGBTBVDD
--VGCACGTGGH----
Original motif |
Reverse complement motif |
Consensus sequence: DDASCACGTGBTBVDD |
Consensus sequence: HHVBABCACGTGSTHD |
|
|
|
|
Motif ID: |
UP00050 |
Motif name: |
Bhlhb2_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
8 |
Number of overlap: |
10 |
Similarity score: |
0.00631885 |
Alignment:
ACHRBHDTCCACGTGYAHHBMHM
-------DCCACGTGCV------
Original motif |
Reverse complement motif |
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT |
Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM |
|
|
|
|
Motif ID: |
UP00050 |
Motif name: |
Bhlhb2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
7 |
Number of overlap: |
10 |
Similarity score: |
0.00821668 |
Alignment:
DDHBHBSTCACGTGAHBBDHHM
------DCCACGTGCV------
Original motif |
Reverse complement motif |
Consensus sequence: RDHDBVDTCACGTGASBHVHDH |
Consensus sequence: DDHBHBSTCACGTGAHBBDHHM |
|
|
|
|
Motif ID: |
UP00046 |
Motif name: |
Tcfe2a_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
10 |
Similarity score: |
0.0140005 |
Alignment:
DHDBHGCACCTGBDDVB
----VGCACGTGGH---
Original motif |
Reverse complement motif |
Consensus sequence: VBHHVCAGGTGCDVDHD |
Consensus sequence: DHDBHGCACCTGBDDVB |
|
|
|
|
Motif ID: |
UP00060 |
Motif name: |
Max_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
10 |
Similarity score: |
0.0308912 |
Alignment:
BBGHCACGCGACDD
--VGCACGTGGH--
Original motif |
Reverse complement motif |
Consensus sequence: BBGHCACGCGACDD |
Consensus sequence: HDGTCGCGTGDCVB |
|
|
|
|
Motif ID: |
UP00165 |
Motif name: |
Titf1 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
10 |
Similarity score: |
0.0311723 |
Alignment:
BVABCCACTTGAMHTT
---DCCACGTGCV---
Original motif |
Reverse complement motif |
Consensus sequence: BVABCCACTTGAMHTT |
Consensus sequence: AAHYTCAAGTGGBTBV |
|
|
|
|
Motif ID: |
UP00249 |
Motif name: |
Nkx2-5 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
10 |
Similarity score: |
0.031308 |
Alignment:
HDADCCACTTRAAWTT
---DCCACGTGCV---
Original motif |
Reverse complement motif |
Consensus sequence: HDADCCACTTRAAWTT |
Consensus sequence: AAWTTMAAGTGGHTDH |
|
|
|
|
Motif ID: |
UP00231 |
Motif name: |
Nkx2-2 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
10 |
Similarity score: |
0.0334845 |
Alignment:
HDVRCCACTTGARADBD
---DCCACGTGCV----
Original motif |
Reverse complement motif |
Consensus sequence: HDVRCCACTTGARADBD |
Consensus sequence: DVDTKTCAAGTGGKBDH |
|
|
|
|
Motif ID: |
UP00147 |
Motif name: |
Nkx2-6 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
10 |
Similarity score: |
0.0345548 |
Alignment:
DDADCCACTTAAVHTT
---DCCACGTGCV---
Original motif |
Reverse complement motif |
Consensus sequence: DDADCCACTTAAVHTT |
Consensus sequence: AAHVTTAAGTGGHTDD |
|
|
|
|
Motif ID: |
UP00527 |
Motif name: |
Foxn4_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
10 |
Similarity score: |
0.0363818 |
Alignment:
VDWDARRGACGCGGWHGGAKHV
-----VGCACGTGGH-------
Original motif |
Reverse complement motif |
Consensus sequence: VDWDARRGACGCGGWHGGAKHV |
Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV |
|
|
|
|
Dataset #: 2 |
Motif ID: 39 |
Motif name: MYCMAX |
Original motif |
Reverse complement motif |
Consensus sequence: RASCACGTGGT |
Consensus sequence: ACCACGTGSTM |
|
|
|
|
Best Matches for Motif ID 39 (Highest to Lowest)
Motif ID: |
UP00060 |
Motif name: |
Max_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
11 |
Similarity score: |
0 |
Alignment:
HHVBABCACGTGSTHD
---RASCACGTGGT--
Original motif |
Reverse complement motif |
Consensus sequence: DDASCACGTGBTBVDD |
Consensus sequence: HHVBABCACGTGSTHD |
|
|
|
|
Motif ID: |
UP00050 |
Motif name: |
Bhlhb2_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
8 |
Number of overlap: |
11 |
Similarity score: |
0.025477 |
Alignment:
ACHRBHDTCCACGTGYAHHBMHM
-------ACCACGTGSTM-----
Original motif |
Reverse complement motif |
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT |
Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM |
|
|
|
|
Motif ID: |
UP00050 |
Motif name: |
Bhlhb2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
11 |
Similarity score: |
0.033078 |
Alignment:
RDHDBVDTCACGTGASBHVHDH
-----RASCACGTGGT------
Original motif |
Reverse complement motif |
Consensus sequence: RDHDBVDTCACGTGASBHVHDH |
Consensus sequence: DDHBHBSTCACGTGAHBBDHHM |
|
|
|
|
Motif ID: |
UP00046 |
Motif name: |
Tcfe2a_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
11 |
Similarity score: |
0.0375583 |
Alignment:
VBHHVCAGGTGCDVDHD
---ACCACGTGSTM---
Original motif |
Reverse complement motif |
Consensus sequence: VBHHVCAGGTGCDVDHD |
Consensus sequence: DHDBHGCACCTGBDDVB |
|
|
|
|
Motif ID: |
UP00046 |
Motif name: |
Tcfe2a_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
11 |
Similarity score: |
0.0452419 |
Alignment:
HVDDVCAGATGKYHBBV
--RASCACGTGGT----
Original motif |
Reverse complement motif |
Consensus sequence: HVDDVCAGATGKYHBBV |
Consensus sequence: VBBDMYCATCTGVHHBH |
|
|
|
|
Motif ID: |
UP00036 |
Motif name: |
Myf6_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
11 |
Similarity score: |
0.0471968 |
Alignment:
VVDBAACAGBTGBYHB
---RASCACGTGGT--
Original motif |
Reverse complement motif |
Consensus sequence: VVDBAACAGBTGBYHB |
Consensus sequence: BDKVCABCTGTTBDBV |
|
|
|
|
Motif ID: |
UP00099 |
Motif name: |
Ascl2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
11 |
Similarity score: |
0.0504418 |
Alignment:
BBYVVCAGCTGCBVHHD
---ACCACGTGSTM---
Original motif |
Reverse complement motif |
Consensus sequence: BBYVVCAGCTGCBVHHD |
Consensus sequence: HHDVVGCAGCTGVBKVB |
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Motif ID: |
UP00084 |
Motif name: |
Gmeb1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
11 |
Similarity score: |
0.0522039 |
Alignment:
HHMACKACGTMGBVCD
---ACCACGTGSTM--
Original motif |
Reverse complement motif |
Consensus sequence: DGVBCRACGTYGTYHH |
Consensus sequence: HHMACKACGTMGBVCD |
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Motif ID: |
UP00165 |
Motif name: |
Titf1 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
11 |
Similarity score: |
0.0554094 |
Alignment:
BVABCCACTTGAMHTT
---ACCACGTGSTM--
Original motif |
Reverse complement motif |
Consensus sequence: BVABCCACTTGAMHTT |
Consensus sequence: AAHYTCAAGTGGBTBV |
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Motif ID: |
UP00060 |
Motif name: |
Max_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
11 |
Similarity score: |
0.0557594 |
Alignment:
HDGTCGCGTGDCVB
-RASCACGTGGT--
Original motif |
Reverse complement motif |
Consensus sequence: BBGHCACGCGACDD |
Consensus sequence: HDGTCGCGTGDCVB |
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Dataset #: 2 |
Motif ID: 40 |
Motif name: Mycn |
Original motif |
Reverse complement motif |
Consensus sequence: HSCACGTGGC |
Consensus sequence: GCCACGTGSD |
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Best Matches for Motif ID 40 (Highest to Lowest)
Motif ID: |
UP00060 |
Motif name: |
Max_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
10 |
Similarity score: |
0 |
Alignment:
DDASCACGTGBTBVDD
--HSCACGTGGC----
Original motif |
Reverse complement motif |
Consensus sequence: DDASCACGTGBTBVDD |
Consensus sequence: HHVBABCACGTGSTHD |
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Motif ID: |
UP00050 |
Motif name: |
Bhlhb2_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
7 |
Number of overlap: |
10 |
Similarity score: |
0.00783793 |
Alignment:
ACHRBHDTCCACGTGYAHHBMHM
-------GCCACGTGSD------
Original motif |
Reverse complement motif |
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT |
Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM |
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Motif ID: |
UP00050 |
Motif name: |
Bhlhb2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
7 |
Number of overlap: |
10 |
Similarity score: |
0.0132858 |
Alignment:
DDHBHBSTCACGTGAHBBDHHM
------GCCACGTGSD------
Original motif |
Reverse complement motif |
Consensus sequence: RDHDBVDTCACGTGASBHVHDH |
Consensus sequence: DDHBHBSTCACGTGAHBBDHHM |
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Motif ID: |
UP00046 |
Motif name: |
Tcfe2a_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
5 |
Number of overlap: |
10 |
Similarity score: |
0.0227933 |
Alignment:
VBHHVCAGGTGCDVDHD
---GCCACGTGSD----
Original motif |
Reverse complement motif |
Consensus sequence: VBHHVCAGGTGCDVDHD |
Consensus sequence: DHDBHGCACCTGBDDVB |
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Motif ID: |
UP00060 |
Motif name: |
Max_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
10 |
Similarity score: |
0.0257011 |
Alignment:
BBGHCACGCGACDD
--HSCACGTGGC--
Original motif |
Reverse complement motif |
Consensus sequence: BBGHCACGCGACDD |
Consensus sequence: HDGTCGCGTGDCVB |
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Motif ID: |
UP00165 |
Motif name: |
Titf1 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
10 |
Similarity score: |
0.0344833 |
Alignment:
BVABCCACTTGAMHTT
---GCCACGTGSD---
Original motif |
Reverse complement motif |
Consensus sequence: BVABCCACTTGAMHTT |
Consensus sequence: AAHYTCAAGTGGBTBV |
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Motif ID: |
UP00231 |
Motif name: |
Nkx2-2 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
5 |
Number of overlap: |
10 |
Similarity score: |
0.035228 |
Alignment:
HDVRCCACTTGARADBD
---GCCACGTGSD----
Original motif |
Reverse complement motif |
Consensus sequence: HDVRCCACTTGARADBD |
Consensus sequence: DVDTKTCAAGTGGKBDH |
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Motif ID: |
UP00084 |
Motif name: |
Gmeb1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
10 |
Similarity score: |
0.0358581 |
Alignment:
BVVDVRYACGTRYVBHB
----GCCACGTGSD---
Original motif |
Reverse complement motif |
Consensus sequence: BHBBKKACGTMMVDBVB |
Consensus sequence: BVVDVRYACGTRYVBHB |
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Motif ID: |
UP00084 |
Motif name: |
Gmeb1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
10 |
Similarity score: |
0.03725 |
Alignment:
HHMACKACGTMGBVCD
---HSCACGTGGC---
Original motif |
Reverse complement motif |
Consensus sequence: DGVBCRACGTYGTYHH |
Consensus sequence: HHMACKACGTMGBVCD |
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Motif ID: |
UP00526 |
Motif name: |
Foxn1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
7 |
Number of overlap: |
10 |
Similarity score: |
0.0383187 |
Alignment:
WHVBVVMACGCGCGTCDYHWDH
------HSCACGTGGC------
Original motif |
Reverse complement motif |
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH |
Consensus sequence: HDWHMHGACGCGCGTRBVVBHW |
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Dataset #: 2 |
Motif ID: 41 |
Motif name: MZF1_5-13 |
Original motif |
Reverse complement motif |
Consensus sequence: BKAGGGGDAD |
Consensus sequence: BTHCCCCTYB |
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Best Matches for Motif ID 41 (Highest to Lowest)
Motif ID: |
UP00022 |
Motif name: |
Zfp740_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
10 |
Similarity score: |
0.0090535 |
Alignment:
DDDTWCCCCCCGGDRVH
---BTHCCCCTYB----
Original motif |
Reverse complement motif |
Consensus sequence: DDDTWCCCCCCGGDRVH |
Consensus sequence: HVKDCCGGGGGGWADDD |
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Motif ID: |
UP00007 |
Motif name: |
Egr1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
10 |
Similarity score: |
0.00910178 |
Alignment:
BBHBGAGTGGGAHHDB
---BKAGGGGDAD---
Original motif |
Reverse complement motif |
Consensus sequence: BBHBGAGTGGGAHHDB |
Consensus sequence: BHHDTCCCACTCBDBV |
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Motif ID: |
UP00070 |
Motif name: |
Gcm1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
10 |
Similarity score: |
0.0101177 |
Alignment:
DDBVHATAGGGGRBRMB
-----BKAGGGGDAD--
Original motif |
Reverse complement motif |
Consensus sequence: DDBVHATAGGGGRBRMB |
Consensus sequence: BYMBKCCCCTATDVBHD |
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Motif ID: |
UP00021 |
Motif name: |
Zfp281_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
10 |
Similarity score: |
0.0103225 |
Alignment:
GKRGGGGGGGGGGBD
BKAGGGGDAD-----
Original motif |
Reverse complement motif |
Consensus sequence: DBCCCCCCCCCCMYC |
Consensus sequence: GKRGGGGGGGGGGBD |
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Motif ID: |
UP00099 |
Motif name: |
Ascl2_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
10 |
Similarity score: |
0.0126235 |
Alignment:
HVDVGGGHGGGGDBHB
-----BKAGGGGDAD-
Original motif |
Reverse complement motif |
Consensus sequence: BHVDCCCCDCCCBDBH |
Consensus sequence: HVDVGGGHGGGGDBHB |
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Motif ID: |
UP00013 |
Motif name: |
Gabpa_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
10 |
Similarity score: |
0.013531 |
Alignment:
DBVVDRSGGAWKVHKG
-BKAGGGGDAD-----
Original motif |
Reverse complement motif |
Consensus sequence: CYDBYWTCCSMHBVVH |
Consensus sequence: DBVVDRSGGAWKVHKG |
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Motif ID: |
UP00022 |
Motif name: |
Zfp740_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
10 |
Similarity score: |
0.0152996 |
Alignment:
BHHDYGGGGGGGGBVD
---BKAGGGGDAD---
Original motif |
Reverse complement motif |
Consensus sequence: HVBCCCCCCCCMHHHB |
Consensus sequence: BHHDYGGGGGGGGBVD |
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Motif ID: |
UP00055 |
Motif name: |
Hbp1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
10 |
Similarity score: |
0.0176527 |
Alignment:
DDDYCCCATTGTVHABH
-BTHCCCCTYB------
Original motif |
Reverse complement motif |
Consensus sequence: DDDYCCCATTGTVHABH |
Consensus sequence: HBTHVACAATGGGMDHD |
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Motif ID: |
UP00002 |
Motif name: |
Sp4_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
10 |
Similarity score: |
0.0183345 |
Alignment:
BDHHMCGCCCCCTHVBB
-----BTHCCCCTYB--
Original motif |
Reverse complement motif |
Consensus sequence: BDHHMCGCCCCCTHVBB |
Consensus sequence: BVVHAGGGGGCGRDHHB |
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Motif ID: |
UP00239 |
Motif name: |
Obox2 |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
10 |
Similarity score: |
0.019782 |
Alignment:
DBRGGGGGATTAAMTAH
BKAGGGGDAD-------
Original motif |
Reverse complement motif |
Consensus sequence: DBRGGGGGATTAAMTAH |
Consensus sequence: HTARTTAATCCCCCKBD |
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Dataset #: 2 |
Motif ID: 42 |
Motif name: NFKB1 |
Original motif |
Reverse complement motif |
Consensus sequence: GGGGRTTCCCC |
Consensus sequence: GGGGAAKCCCC |
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Best Matches for Motif ID 42 (Highest to Lowest)
Motif ID: |
UP00021 |
Motif name: |
Zfp281_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
11 |
Similarity score: |
0.0371794 |
Alignment:
DKKWDACCCCCAHTDDV
------GGGGRTTCCCC
Original motif |
Reverse complement motif |
Consensus sequence: DKKWDACCCCCAHTDDV |
Consensus sequence: VDDAHTGGGGGTHWYYD |
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Motif ID: |
UP00088 |
Motif name: |
Plagl1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
11 |
Similarity score: |
0.0407901 |
Alignment:
DBHGGGGGGTACCHHHD
----GGGGRTTCCCC--
Original motif |
Reverse complement motif |
Consensus sequence: DBHGGGGGGTACCHHHD |
Consensus sequence: DHDDGGTACCCCCCHBH |
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Motif ID: |
UP00088 |
Motif name: |
Plagl1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
11 |
Similarity score: |
0.0459696 |
Alignment:
BHDGGGGSSCCCCBVV
--GGGGRTTCCCC---
Original motif |
Reverse complement motif |
Consensus sequence: BHDGGGGSSCCCCBVV |
Consensus sequence: VBVGGGGSSCCCCHHV |
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Motif ID: |
UP00176 |
Motif name: |
Crx |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
11 |
Similarity score: |
0.0464973 |
Alignment:
DGGMTAATCCCCDWBK
-GGGGAAKCCCC----
Original motif |
Reverse complement motif |
Consensus sequence: YBWDGGGGATTARCCD |
Consensus sequence: DGGMTAATCCCCDWBK |
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Motif ID: |
UP00265 |
Motif name: |
Pitx3 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
11 |
Similarity score: |
0.048533 |
Alignment:
GBHDGCTAATCCCCCB
---GGGGAAKCCCC--
Original motif |
Reverse complement motif |
Consensus sequence: VGGGGGATTAGCDDBC |
Consensus sequence: GBHDGCTAATCCCCCB |
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Motif ID: |
UP00216 |
Motif name: |
Obox1 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
5 |
Number of overlap: |
11 |
Similarity score: |
0.0502644 |
Alignment:
DHDGTTAATCCCCKTDD
--GGGGAAKCCCC----
Original motif |
Reverse complement motif |
Consensus sequence: DDARGGGGATTAACDHH |
Consensus sequence: DHDGTTAATCCCCKTDD |
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Motif ID: |
UP00239 |
Motif name: |
Obox2 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
5 |
Number of overlap: |
11 |
Similarity score: |
0.0515498 |
Alignment:
HTARTTAATCCCCCKBD
--GGGGAAKCCCC----
Original motif |
Reverse complement motif |
Consensus sequence: DBRGGGGGATTAAMTAH |
Consensus sequence: HTARTTAATCCCCCKBD |
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Motif ID: |
UP00160 |
Motif name: |
Obox3 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
11 |
Similarity score: |
0.0520605 |
Alignment:
HHWGTTAATCCCCCBBH
--GGGGAAKCCCC----
Original motif |
Reverse complement motif |
Consensus sequence: HBVGGGGGATTAACWHH |
Consensus sequence: HHWGTTAATCCCCCBBH |
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Motif ID: |
UP00024 |
Motif name: |
Glis2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
11 |
Similarity score: |
0.052761 |
Alignment:
HKBBGGGGGGTCVHHH
-----GGGGRTTCCCC
Original motif |
Reverse complement motif |
Consensus sequence: HHHVGACCCCCCVBRD |
Consensus sequence: HKBBGGGGGGTCVHHH |
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Motif ID: |
UP00539 |
Motif name: |
Gli2_v015681_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
7 |
Number of overlap: |
11 |
Similarity score: |
0.0555704 |
Alignment:
CBDMCMGGGTGGTCCHVBVBAH
------GGGGAAKCCCC-----
Original motif |
Reverse complement motif |
Consensus sequence: HTBVVVDGGACCACCCRGRDBG |
Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH |
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Dataset #: 2 |
Motif ID: 43 |
Motif name: NR1H2RXRA |
Original motif |
Reverse complement motif |
Consensus sequence: AAAGGTCAAAGGTCAAC |
Consensus sequence: GTTGACCTTTGACCTTT |
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Best Matches for Motif ID 43 (Highest to Lowest)
Motif ID: |
UP00539 |
Motif name: |
Gli2_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
17 |
Similarity score: |
0.0538452 |
Alignment:
DVMHHDHKGACCCTCCTSVCBH
-----GTTGACCTTTGACCTTT
Original motif |
Reverse complement motif |
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH |
Consensus sequence: DVMHHDHKGACCCTCCTSVCBH |
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Motif ID: |
UP00032 |
Motif name: |
Gata3_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
17 |
Similarity score: |
0.0545098 |
Alignment:
BDHDDADAGATAAGADHBDHVD
-----AAAGGTCAAAGGTCAAC
Original motif |
Reverse complement motif |
Consensus sequence: BDHDDADAGATAAGADHBDHVD |
Consensus sequence: HBHDVHDTCTTATCTHTDDHDV |
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Motif ID: |
UP00067 |
Motif name: |
Lef1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
16 |
Similarity score: |
0.521114 |
Alignment:
VDDAGATCAAAGGKDDD-
-AAAGGTCAAAGGTCAAC
Original motif |
Reverse complement motif |
Consensus sequence: DDDYCCTTTGATCTDDV |
Consensus sequence: VDDAGATCAAAGGKDDD |
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Motif ID: |
UP00083 |
Motif name: |
Tcf7l2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
16 |
Similarity score: |
0.527825 |
Alignment:
-DDDYCCTTTGATSTDDV
GTTGACCTTTGACCTTT-
Original motif |
Reverse complement motif |
Consensus sequence: DDDYCCTTTGATSTDDV |
Consensus sequence: BDDASATCAAAGGMDDD |
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Motif ID: |
UP00054 |
Motif name: |
Tcf7_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
16 |
Similarity score: |
0.531154 |
Alignment:
BHHASATCAAAGGAHHH-
-AAAGGTCAAAGGTCAAC
Original motif |
Reverse complement motif |
Consensus sequence: BHHASATCAAAGGAHHH |
Consensus sequence: HHHTCCTTTGATSTHHV |
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Motif ID: |
UP00058 |
Motif name: |
Tcf3_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
16 |
Similarity score: |
0.531876 |
Alignment:
-HHHASATCAAAGVRHHH
AAAGGTCAAAGGTCAAC-
Original motif |
Reverse complement motif |
Consensus sequence: HHHASATCAAAGVRHHH |
Consensus sequence: HHHKVCTTTGATSTHHH |
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Motif ID: |
UP00030 |
Motif name: |
Sox11_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
2 |
Number of overlap: |
16 |
Similarity score: |
0.544403 |
Alignment:
HBDDRAACAAAGRABHH-
-AAAGGTCAAAGGTCAAC
Original motif |
Reverse complement motif |
Consensus sequence: HBDDRAACAAAGRABHH |
Consensus sequence: HHBTMCTTTGTTMDDVH |
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Motif ID: |
UP00062 |
Motif name: |
Sox4_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
16 |
Similarity score: |
0.544565 |
Alignment:
-HHBBMCTTTGTTHDDBH
GTTGACCTTTGACCTTT-
Original motif |
Reverse complement motif |
Consensus sequence: HBDDDAACAAAGRVBHH |
Consensus sequence: HHBBMCTTTGTTHDDBH |
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Motif ID: |
UP00019 |
Motif name: |
Zbtb12_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
16 |
Similarity score: |
0.550511 |
Alignment:
-BBGATCTAGAACBKHDB
GTTGACCTTTGACCTTT-
Original motif |
Reverse complement motif |
Consensus sequence: BDHRBGTTCTAGATCVB |
Consensus sequence: BBGATCTAGAACBKHDB |
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Motif ID: |
UP00046 |
Motif name: |
Tcfe2a_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
16 |
Similarity score: |
0.552064 |
Alignment:
-HVDDVCAGATGKYHBBV
AAAGGTCAAAGGTCAAC-
Original motif |
Reverse complement motif |
Consensus sequence: HVDDVCAGATGKYHBBV |
Consensus sequence: VBBDMYCATCTGVHHBH |
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Dataset #: 2 |
Motif ID: 44 |
Motif name: NR4A2 |
Original motif |
Reverse complement motif |
Consensus sequence: AAGGTCAC |
Consensus sequence: GTGACCTT |
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Best Matches for Motif ID 44 (Highest to Lowest)
Motif ID: |
UP00048 |
Motif name: |
Rara |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
4 |
Number of overlap: |
8 |
Similarity score: |
0 |
Alignment:
HHVGTGACCTTTDVDD
---GTGACCTT-----
Original motif |
Reverse complement motif |
Consensus sequence: DHBHAAAGGTCACVHD |
Consensus sequence: HHVGTGACCTTTDVDD |
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Motif ID: |
UP00009 |
Motif name: |
Nr2f2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
8 |
Similarity score: |
0.0074527 |
Alignment:
DHBHAAAGGTCAHVHB
-----AAGGTCAC---
Original motif |
Reverse complement motif |
Consensus sequence: DHBHAAAGGTCAHVHB |
Consensus sequence: BHVDTGACCTTTDVDD |
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Motif ID: |
UP00079 |
Motif name: |
Esrra_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
8 |
Similarity score: |
0.01542 |
Alignment:
DHDBCAAGGTCAHVBDH
-----AAGGTCAC----
Original motif |
Reverse complement motif |
Consensus sequence: DHDBCAAGGTCAHVBDH |
Consensus sequence: HHBVHTGACCTTGVDHD |
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Motif ID: |
UP00009 |
Motif name: |
Nr2f2_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
8 |
Similarity score: |
0.0395644 |
Alignment:
VBVBCSGGGTCAVBBH
-----AAGGTCAC---
Original motif |
Reverse complement motif |
Consensus sequence: VBVBCSGGGTCAVBBH |
Consensus sequence: HVBVTGACCCSGBVBV |
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Motif ID: |
UP00082 |
Motif name: |
Zfp187_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
8 |
Similarity score: |
0.0407874 |
Alignment:
DDGMCCTBGTCCHYHV
GTGACCTT--------
Original motif |
Reverse complement motif |
Consensus sequence: DDGMCCTBGTCCHYHV |
Consensus sequence: VHMDGGACVAGGRCDH |
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Motif ID: |
UP00053 |
Motif name: |
Rxra_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
8 |
Similarity score: |
0.0422933 |
Alignment:
DBHBDTGACCCCDHVHB
----GTGACCTT-----
Original motif |
Reverse complement motif |
Consensus sequence: DBHBDTGACCCCDHVHB |
Consensus sequence: VHBHDGGGGTCAHBHBD |
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Motif ID: |
UP00079 |
Motif name: |
Esrra_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
5 |
Number of overlap: |
8 |
Similarity score: |
0.0447444 |
Alignment:
VKBBAGGGGTCAHDBBH
-----AAGGTCAC----
Original motif |
Reverse complement motif |
Consensus sequence: VKBBAGGGGTCAHDBBH |
Consensus sequence: DBBHHTGACCCCTBBYV |
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Motif ID: |
UP00066 |
Motif name: |
Hnf4a_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
8 |
Similarity score: |
0.0481418 |
Alignment:
BBHHAAAGTCCAMTHH
-----AAGGTCAC---
Original motif |
Reverse complement motif |
Consensus sequence: BBHHAAAGTCCAMTHH |
Consensus sequence: HHAYTGGACTTTHDBV |
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Motif ID: |
UP00197 |
Motif name: |
Hoxc9 |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
8 |
Number of overlap: |
8 |
Similarity score: |
0.0497679 |
Alignment:
VDHHTTAATGACCBHV
-------GTGACCTT-
Original motif |
Reverse complement motif |
Consensus sequence: VDVGGTCATTAAHHDB |
Consensus sequence: VDHHTTAATGACCBHV |
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Motif ID: |
UP00035 |
Motif name: |
Hic1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
5 |
Number of overlap: |
8 |
Similarity score: |
0.0500062 |
Alignment:
DBDDRTGCCCAWDHDV
----GTGACCTT----
Original motif |
Reverse complement motif |
Consensus sequence: DBDDRTGCCCAWDHDV |
Consensus sequence: VHHDWTGGGCAMDHBH |
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Dataset #: 2 |
Motif ID: 45 |
Motif name: Pax5 |
Original motif |
Reverse complement motif |
Consensus sequence: DGVBCABTGDWGCGKRRCSR |
Consensus sequence: MSGKKRCGCWDCABTGBBCD |
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Best Matches for Motif ID 45 (Highest to Lowest)
Motif ID: |
UP00526 |
Motif name: |
Foxn1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
20 |
Similarity score: |
0.0499537 |
Alignment:
DDRMHBACGCGYGCGTDGBBDB
-DGVBCABTGDWGCGKRRCSR-
Original motif |
Reverse complement motif |
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB |
Consensus sequence: BDVBCDACGCKCGCGTBHRKHD |
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Motif ID: |
UP00526 |
Motif name: |
Foxn1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
20 |
Similarity score: |
0.0520196 |
Alignment:
HDWHMHGACGCGCGTRBVVBHW
DGVBCABTGDWGCGKRRCSR--
Original motif |
Reverse complement motif |
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH |
Consensus sequence: HDWHMHGACGCGCGTRBVVBHW |
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Motif ID: |
UP00539 |
Motif name: |
Gli2_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
20 |
Similarity score: |
0.0542764 |
Alignment:
HDBABCGBKRGYGGCGMSBHAK
-DGVBCABTGDWGCGKRRCSR-
Original motif |
Reverse complement motif |
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH |
Consensus sequence: HDBABCGBKRGYGGCGMSBHAK |
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Motif ID: |
UP00528 |
Motif name: |
Foxm1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
20 |
Similarity score: |
0.0560636 |
Alignment:
DCATDBTGHGCATKMTTBRSWR
--MSGKKRCGCWDCABTGBBCD
Original motif |
Reverse complement motif |
Consensus sequence: MWSMBAARRATGCDCABHATGD |
Consensus sequence: DCATDBTGHGCATKMTTBRSWR |
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Motif ID: |
UP00540 |
Motif name: |
Gli3_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
20 |
Similarity score: |
0.0595671 |
Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
DGVBCABTGDWGCGKRRCSR---
Original motif |
Reverse complement motif |
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH |
Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV |
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Motif ID: |
UP00528 |
Motif name: |
Foxm1_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
20 |
Similarity score: |
0.0602559 |
Alignment:
HADTBVADGATGCATCMTGMVHB
DGVBCABTGDWGCGKRRCSR---
Original motif |
Reverse complement motif |
Consensus sequence: HADTBVADGATGCATCMTGMVHB |
Consensus sequence: VHVRCAYGATGCATCDTVVADTH |
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Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
20 |
Similarity score: |
0.0607506 |
Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
DGVBCABTGDWGCGKRRCSR---
Original motif |
Reverse complement motif |
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB |
Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH |
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Motif ID: |
UP00098 |
Motif name: |
Rfx3_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Backward |
Position number: |
4 |
Number of overlap: |
20 |
Similarity score: |
0.0611227 |
Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
MSGKKRCGCWDCABTGBBCD---
Original motif |
Reverse complement motif |
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB |
Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB |
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Motif ID: |
UP00050 |
Motif name: |
Bhlhb2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
20 |
Similarity score: |
0.0611361 |
Alignment:
RDHDBVDTCACGTGASBHVHDH
--MSGKKRCGCWDCABTGBBCD
Original motif |
Reverse complement motif |
Consensus sequence: RDHDBVDTCACGTGASBHVHDH |
Consensus sequence: DDHBHBSTCACGTGAHBBDHHM |
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Motif ID: |
UP00034 |
Motif name: |
Sox7_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
20 |
Similarity score: |
0.061403 |
Alignment:
GTVBDAATTGTVTGHGDDHKVB
DGVBCABTGDWGCGKRRCSR--
Original motif |
Reverse complement motif |
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB |
Consensus sequence: VVYDDDCHCAVACAATTDBVAC |
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Dataset #: 2 |
Motif ID: 46 |
Motif name: RORA_1 |
Original motif |
Reverse complement motif |
Consensus sequence: AWVDAGGTCA |
Consensus sequence: TGACCTDVWT |
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Best Matches for Motif ID 46 (Highest to Lowest)
Motif ID: |
UP00009 |
Motif name: |
Nr2f2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
5 |
Number of overlap: |
10 |
Similarity score: |
0.0154749 |
Alignment:
DHBHAAAGGTCAHVHB
--AWVDAGGTCA----
Original motif |
Reverse complement motif |
Consensus sequence: DHBHAAAGGTCAHVHB |
Consensus sequence: BHVDTGACCTTTDVDD |
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|
Motif ID: |
UP00079 |
Motif name: |
Esrra_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
10 |
Similarity score: |
0.0176661 |
Alignment:
HHBVHTGACCTTGVDHD
-----TGACCTDVWT--
Original motif |
Reverse complement motif |
Consensus sequence: DHDBCAAGGTCAHVBDH |
Consensus sequence: HHBVHTGACCTTGVDHD |
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|
|
Motif ID: |
UP00048 |
Motif name: |
Rara |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
10 |
Similarity score: |
0.0189599 |
Alignment:
DHBHAAAGGTCACVHD
--AWVDAGGTCA----
Original motif |
Reverse complement motif |
Consensus sequence: DHBHAAAGGTCACVHD |
Consensus sequence: HHVGTGACCTTTDVDD |
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|
|
Motif ID: |
UP00009 |
Motif name: |
Nr2f2_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
5 |
Number of overlap: |
10 |
Similarity score: |
0.0331999 |
Alignment:
VBVBCSGGGTCAVBBH
--AWVDAGGTCA----
Original motif |
Reverse complement motif |
Consensus sequence: VBVBCSGGGTCAVBBH |
Consensus sequence: HVBVTGACCCSGBVBV |
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|
Motif ID: |
UP00066 |
Motif name: |
Hnf4a_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
10 |
Similarity score: |
0.0341771 |
Alignment:
BDBVMGGGGTCAABHDV
--AWVDAGGTCA-----
Original motif |
Reverse complement motif |
Consensus sequence: BDBVMGGGGTCAABHDV |
Consensus sequence: BHHVTTGACCCCYVVDB |
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|
Motif ID: |
UP00053 |
Motif name: |
Rxra_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
6 |
Number of overlap: |
10 |
Similarity score: |
0.0363566 |
Alignment:
DBHBDTGACCCCDHVHB
-----TGACCTDVWT--
Original motif |
Reverse complement motif |
Consensus sequence: DBHBDTGACCCCDHVHB |
Consensus sequence: VHBHDGGGGTCAHBHBD |
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|
|
|
Motif ID: |
UP00079 |
Motif name: |
Esrra_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
3 |
Number of overlap: |
10 |
Similarity score: |
0.0391284 |
Alignment:
VKBBAGGGGTCAHDBBH
--AWVDAGGTCA-----
Original motif |
Reverse complement motif |
Consensus sequence: VKBBAGGGGTCAHDBBH |
Consensus sequence: DBBHHTGACCCCTBBYV |
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|
|
|
Motif ID: |
UP00035 |
Motif name: |
Hic1_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
2 |
Number of overlap: |
10 |
Similarity score: |
0.0444205 |
Alignment:
DBDDRTGCCCAWDHDV
-----TGACCTDVWT-
Original motif |
Reverse complement motif |
Consensus sequence: DBDDRTGCCCAWDHDV |
Consensus sequence: VHHDWTGGGCAMDHBH |
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|
|
|
Motif ID: |
UP00050 |
Motif name: |
Bhlhb2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
10 |
Similarity score: |
0.0461434 |
Alignment:
RDHDBVDTCACGTGASBHVHDH
AWVDAGGTCA------------
Original motif |
Reverse complement motif |
Consensus sequence: RDHDBVDTCACGTGASBHVHDH |
Consensus sequence: DDHBHBSTCACGTGAHBBDHHM |
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|
|
|
Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
3 |
Number of overlap: |
10 |
Similarity score: |
0.0489571 |
Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
-----------TGACCTDVWT--
Original motif |
Reverse complement motif |
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH |
Consensus sequence: HGDHVHKGACCACCCGGBGBGDB |
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|
|
Dataset #: 2 |
Motif ID: 47 |
Motif name: RXRRAR_DR5 |
Original motif |
Reverse complement motif |
Consensus sequence: RGKTCABVVRGAGGTCA |
Consensus sequence: TGACCTCKVVBTGAYCK |
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|
Best Matches for Motif ID 47 (Highest to Lowest)
Motif ID: |
UP00540 |
Motif name: |
Gli3_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
17 |
Similarity score: |
0.0585087 |
Alignment:
DVTTVVCVYGGHGGYCHHDMYB
RGKTCABVVRGAGGTCA-----
Original motif |
Reverse complement motif |
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB |
Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH |
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|
|
|
Motif ID: |
UP00034 |
Motif name: |
Sox7_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
17 |
Similarity score: |
0.0709955 |
Alignment:
GTVBDAATTGTVTGHGDDHKVB
-----RGKTCABVVRGAGGTCA
Original motif |
Reverse complement motif |
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB |
Consensus sequence: VVYDDDCHCAVACAATTDBVAC |
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|
|
|
Motif ID: |
UP00538 |
Motif name: |
Gli1_v015681_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
17 |
Similarity score: |
0.075055 |
Alignment:
DVVTTVGTGGGHGGYAMHWHHHY
RGKTCABVVRGAGGTCA------
Original motif |
Reverse complement motif |
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH |
Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY |
|
|
|
|
Motif ID: |
UP00538 |
Motif name: |
Gli1_v015681_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Forward |
Position number: |
7 |
Number of overlap: |
17 |
Similarity score: |
0.0758824 |
Alignment:
BBBDVVRGACCACCCAVGABBAB
------RGKTCABVVRGAGGTCA
Original motif |
Reverse complement motif |
Consensus sequence: BBBDVVRGACCACCCAVGABBAB |
Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB |
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Motif ID: |
UP00032 |
Motif name: |
Gata3_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
6 |
Number of overlap: |
17 |
Similarity score: |
0.0759953 |
Alignment:
HBHDVBWGATHBTATCRVBHHH
TGACCTCKVVBTGAYCK-----
Original motif |
Reverse complement motif |
Consensus sequence: HBHDVBWGATHBTATCRVBHHH |
Consensus sequence: HHHBBMGATAVHATCWVVDHVH |
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Motif ID: |
UP00539 |
Motif name: |
Gli2_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
1 |
Number of overlap: |
17 |
Similarity score: |
0.0760211 |
Alignment:
DTVBDDRGACCACCCAGDWDGBH
------RGKTCABVVRGAGGTCA
Original motif |
Reverse complement motif |
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH |
Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH |
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Motif ID: |
UP00538 |
Motif name: |
Gli1_v016060_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Reverse Complement |
Matching format of second motif: |
Original Motif |
Direction: |
Backward |
Position number: |
7 |
Number of overlap: |
17 |
Similarity score: |
0.0763398 |
Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
TGACCTCKVVBTGAYCK------
Original motif |
Reverse complement motif |
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH |
Consensus sequence: HGDHVHKGACCACCCGGBGBGDB |
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Motif ID: |
UP00539 |
Motif name: |
Gli2_v016060_secondary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
1 |
Number of overlap: |
17 |
Similarity score: |
0.0768658 |
Alignment:
RTHBSYCGCCMCMYVCGBTVDH
RGKTCABVVRGAGGTCA-----
Original motif |
Reverse complement motif |
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH |
Consensus sequence: HDBABCGBKRGYGGCGMSBHAK |
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Motif ID: |
UP00050 |
Motif name: |
Bhlhb2_primary |
Species: |
Mus musculus |
Matching format of first motif: |
Original Motif |
Matching format of second motif: |
Reverse Complement |
Direction: |
Forward |
Position number: |
5 |
Number of over |