MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.1

INPUT

Input Parameters
Number of files: 2
Number of top significant motifs: 10
Number of best matches: 10
Similarity cutoff >= 0.75
Matching motif database: UniProbe Mus Musculus
Phylogenetic tree: Yes
Combined similar motifs: Yes
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
MEME-ChIP_DM721.txt 11 1
PScanChIP_DM721.txt 37 2

RESULTS

Best Matches in Database for Each Motif (Highest to Lowest)

Dataset #: 1 Motif ID: 1 Motif name: Motif 1

Original motif Reverse complement motif
Consensus sequence: RGGAAR Consensus sequence: MTTCCK

Best Matches for Motif ID 1 (Highest to Lowest)

Motif ID: UP00090
Motif name: Elf3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0

Alignment:
TDAMTTCCYYDTD
---MTTCCK----

Original motif Reverse complement motif
Consensus sequence: DAHMMGGAARTDA Consensus sequence: TDAMTTCCYYDTD


Motif ID: UP00085
Motif name: Sfpi1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.00351709

Alignment:
BDAWGVGGAAGTDH
-----RGGAAR---

Original motif Reverse complement motif
Consensus sequence: BDAWGVGGAAGTDH Consensus sequence: HDACTTCCBCWTDV


Motif ID: UP00414
Motif name: Ets1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.00356242

Alignment:
DDBAMTTCCGGTDHDHB
----MTTCCK-------

Original motif Reverse complement motif
Consensus sequence: BDDDHACCGGAARTVDD Consensus sequence: DDBAMTTCCGGTDHDHB


Motif ID: UP00409
Motif name: Elf5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.00439981

Alignment:
BWAHSMGGAAGTWD
-----RGGAAR---

Original motif Reverse complement motif
Consensus sequence: BWAHSMGGAAGTWD Consensus sequence: DWACTTCCRSDTWV


Motif ID: UP00015
Motif name: Ehf_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.00655644

Alignment:
DDACTTCCGGBTHBB
---MTTCCK------

Original motif Reverse complement motif
Consensus sequence: VBDABCCGGAAGTDD Consensus sequence: DDACTTCCGGBTHBB


Motif ID: UP00013
Motif name: Gabpa_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.00663687

Alignment:
BHHHACTTCCGGTHHBD
-----MTTCCK------

Original motif Reverse complement motif
Consensus sequence: HVHHACCGGAAGTDHHV Consensus sequence: BHHHACTTCCGGTHHBD


Motif ID: UP00413
Motif name: Elf4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.00896416

Alignment:
DBBHACTTCCGGKWTH
-----MTTCCK-----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGKWTH Consensus sequence: HAWYCCGGAAGTHBBD


Motif ID: UP00419
Motif name: Spic
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.00975526

Alignment:
VAAAGMGGAAGTWD
-----RGGAAR---

Original motif Reverse complement motif
Consensus sequence: VAAAGMGGAAGTWD Consensus sequence: DWACTTCCRCTTTB


Motif ID: UP00418
Motif name: Etv6
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0103447

Alignment:
DVHBTACTTCCGGHTHB
------MTTCCK-----

Original motif Reverse complement motif
Consensus sequence: DVHBTACTTCCGGHTHB Consensus sequence: BHAHCCGGAAGTABDVD


Motif ID: UP00404
Motif name: Elf2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.010491

Alignment:
DBBHACTTCCGGDWDB
-----MTTCCK-----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGDWDB Consensus sequence: BDWDCCGGAAGTHBBD


Dataset #: 1 Motif ID: 2 Motif name: Motif 2

Original motif Reverse complement motif
Consensus sequence: AMACA Consensus sequence: TGTRT

Best Matches for Motif ID 2 (Highest to Lowest)

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 5
Similarity score: 0

Alignment:
DVMVGCACACACKCVH
------AMACA-----

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD


Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 5
Similarity score: 0.00605402

Alignment:
DDAATGTAAACAAAVVB
-------AMACA-----

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD


Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.00753267

Alignment:
HDHRTAAACAAAHDDD
-----AMACA------

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH


Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 5
Similarity score: 0.00965634

Alignment:
HDHADGTAAACAAAVVH
-------AMACA-----

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH


Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.00989492

Alignment:
DWAATRTAAACAAWVVB
-------AMACA-----

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD


Motif ID: UP00004
Motif name: Sox14_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 5
Similarity score: 0.0116453

Alignment:
BBDCMATTGTSTBRB
-------TGTRT---

Original motif Reverse complement motif
Consensus sequence: BKBASACAATRGHBB Consensus sequence: BBDCMATTGTSTBRB


Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.0143122

Alignment:
HHWAWGTAAAYAAAVDB
-------AMACA-----

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH


Motif ID: UP00026
Motif name: Zscan4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.0153228

Alignment:
BHHHTTGTGTGCKHVD
-----TGTRT------

Original motif Reverse complement motif
Consensus sequence: HVHRGCACACAAHHHV Consensus sequence: BHHHTTGTGTGCKHVD


Motif ID: UP00011
Motif name: Irf6_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.024195

Alignment:
DHDBTKGTTTCGHTHDD
-----TGTRT-------

Original motif Reverse complement motif
Consensus sequence: HDDAHCGAAACYAVDDD Consensus sequence: DHDBTKGTTTCGHTHDD


Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.0255974

Alignment:
HDHDDCCAGACABBHVH
-------AMACA-----

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD


Dataset #: 1 Motif ID: 3 Motif name: Motif 3

Original motif Reverse complement motif
Consensus sequence: AGSCWGG Consensus sequence: CCWGSCT

Best Matches for Motif ID 3 (Highest to Lowest)

Motif ID: UP00035
Motif name: Hic1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0

Alignment:
DDBHGGTTGGCATVBD
---AGSCWGG------

Original motif Reverse complement motif
Consensus sequence: DBBATGCCAACCHVHH Consensus sequence: DDBHGGTTGGCATVBD


Motif ID: UP00070
Motif name: Gcm1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.00560414

Alignment:
DHDVATGCGGGTHVVH
----AGSCWGG-----

Original motif Reverse complement motif
Consensus sequence: HVVHACCCGCATVDHD Consensus sequence: DHDVATGCGGGTHVVH


Motif ID: UP00095
Motif name: Zfp691_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 7
Similarity score: 0.0109149

Alignment:
VHBDDAGGAGTCWBBTD
--------AGSCWGG--

Original motif Reverse complement motif
Consensus sequence: DABBWGACTCCTHDVHV Consensus sequence: VHBDDAGGAGTCWBBTD


Motif ID: UP00006
Motif name: Zic3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 7
Similarity score: 0.0109242

Alignment:
DVHCYTGCTGTGHDH
--CCWGSCT------

Original motif Reverse complement motif
Consensus sequence: DDDCACAGCAKGHVD Consensus sequence: DVHCYTGCTGTGHDH


Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0114503

Alignment:
HDHDDCCAGACABBHVH
-----CCWGSCT-----

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD


Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0115258

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
-----AGSCWGG----------

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 7
Similarity score: 0.0117486

Alignment:
HGDHVHKGACCACCCGGBGBGDB
---------CCWGSCT-------

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0131676

Alignment:
CVHBSCGGGTGGTCMHVHHCDH
-----AGSCWGG----------

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH


Motif ID: UP00081
Motif name: Mybl1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0.0136026

Alignment:
BHCGGCAGTTGGBBB
--AGSCWGG------

Original motif Reverse complement motif
Consensus sequence: BBVCCAACTGCCGHB Consensus sequence: BHCGGCAGTTGGBBB


Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0.0139558

Alignment:
DVBCYTGCTGBGDDD
--CCWGSCT------

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD


Dataset #: 1 Motif ID: 4 Motif name: Motif 4

Original motif Reverse complement motif
Consensus sequence: CTCTGY Consensus sequence: KCAGAG

Best Matches for Motif ID 4 (Highest to Lowest)

Motif ID: UP00031
Motif name: Zbtb3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0

Alignment:
BBBAVTGCAGTGBBVDD
------KCAGAG-----

Original motif Reverse complement motif
Consensus sequence: DDBBBCACTGCABTBBB Consensus sequence: BBBAVTGCAGTGBBVDD


Motif ID: UP00018
Motif name: Irf4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.00610915

Alignment:
BHHWCCGAGAMTVVB
---KCAGAG------

Original motif Reverse complement motif
Consensus sequence: VVBAYTCTCGGWHDB Consensus sequence: BHHWCCGAGAMTVVB


Motif ID: UP00095
Motif name: Zfp691_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.00648219

Alignment:
VHBDDAGGAGTCWBBTD
----KCAGAG-------

Original motif Reverse complement motif
Consensus sequence: DABBWGACTCCTHDVHV Consensus sequence: VHBDDAGGAGTCWBBTD


Motif ID: UP00006
Motif name: Zic3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.00853125

Alignment:
DDDCACAGCAKGHVD
--KCAGAG-------

Original motif Reverse complement motif
Consensus sequence: DDDCACAGCAKGHVD Consensus sequence: DVHCYTGCTGTGHDH


Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.00895004

Alignment:
BHHDTCCCACTCBDBV
---------CTCTGY-

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV


Motif ID: UP00095
Motif name: Zfp691_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.00955889

Alignment:
DDHBYGAGCACTGBHHB
--------CTCTGY---

Original motif Reverse complement motif
Consensus sequence: BDHVCAGTGCTCMBHDD Consensus sequence: DDHBYGAGCACTGBHHB


Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0106184

Alignment:
VDDAGATCAAAGGKDDD
------KCAGAG-----

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD


Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.0122635

Alignment:
BHDCVCAGCAGGHVD
--KCAGAG-------

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB


Motif ID: UP00083
Motif name: Tcf7l2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0131237

Alignment:
BDDASATCAAAGGMDDD
------KCAGAG-----

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATSTDDV Consensus sequence: BDDASATCAAAGGMDDD


Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0136526

Alignment:
HHDCVCAGCAKGVVD
--KCAGAG-------

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD


Dataset #: 1 Motif ID: 5 Motif name: Motif 5

Original motif Reverse complement motif
Consensus sequence: ATKTM Consensus sequence: RARAT

Best Matches for Motif ID 5 (Highest to Lowest)

Motif ID: UP00080
Motif name: Gata5_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 5
Similarity score: 0

Alignment:
VVBHRAGATATCWDHBB
----RARAT--------

Original motif Reverse complement motif
Consensus sequence: VVBHRAGATATCWDHBB Consensus sequence: VVHHWGATATCTMHBBV


Motif ID: UP00148
Motif name: Hdx
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 5
Similarity score: 0.00279496

Alignment:
DDKDHGAAATCAHHBHV
-----RARAT-------

Original motif Reverse complement motif
Consensus sequence: DDKDHGAAATCAHHBHV Consensus sequence: BDBDHTGATTTCDHYDD


Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 12
Number of overlap: 5
Similarity score: 0.00967655

Alignment:
BDHDDADAGATAAGADHBDHVD
------RARAT-----------

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00250
Motif name: Irx5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.0116566

Alignment:
DDDHWACATGTWHDABW
-------ATKTM-----

Original motif Reverse complement motif
Consensus sequence: DDDHWACATGTWHDABW Consensus sequence: WVTDHWACATGTWHDDD


Motif ID: UP00236
Motif name: Irx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.0120196

Alignment:
WDDDTACATGTADDWBW
-------ATKTM-----

Original motif Reverse complement motif
Consensus sequence: WDDDTACATGTADDWBW Consensus sequence: WVWDDTACATGTADDDW


Motif ID: UP00150
Motif name: Irx6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 5
Similarity score: 0.0120601

Alignment:
HAHDTACATGTAVDWHT
-------ATKTM-----

Original motif Reverse complement motif
Consensus sequence: HAHDTACATGTAVDWHT Consensus sequence: AHWDBTACATGTADHTH


Motif ID: UP00223
Motif name: Irx3_2226.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 5
Similarity score: 0.0124884

Alignment:
DDDHTACATGTAVWDHD
-------ATKTM-----

Original motif Reverse complement motif
Consensus sequence: DDDHTACATGTAVWDHD Consensus sequence: DHDWBTACATGTAHDDD


Motif ID: UP00033
Motif name: Zfp410_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 5
Similarity score: 0.0150044

Alignment:
DVDDATGGGATGKMDDV
---------ATKTM---

Original motif Reverse complement motif
Consensus sequence: DVDDATGGGATGKMDDV Consensus sequence: BDDYYCATCCCATDDBD


Motif ID: UP00223
Motif name: Irx3_0920.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.0150192

Alignment:
DDDDTACATGTAVWWHD
-------ATKTM-----

Original motif Reverse complement motif
Consensus sequence: DDDDTACATGTAVWWHD Consensus sequence: DDWWBTACATGTADDDD


Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 12
Number of overlap: 5
Similarity score: 0.0166075

Alignment:
MWSMBAARRATGCDCABHATGD
------RARAT-----------

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR


Dataset #: 1 Motif ID: 6 Motif name: Motif 6

Original motif Reverse complement motif
Consensus sequence: CMGCRGC Consensus sequence: GCKGCYG

Best Matches for Motif ID 6 (Highest to Lowest)

Motif ID: UP00052
Motif name: Osr2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0

Alignment:
HHHHGCTACKGTHVHH
----GCKGCYG-----

Original motif Reverse complement motif
Consensus sequence: HHVHACRGTAGCHHHD Consensus sequence: HHHHGCTACKGTHVHH


Motif ID: UP00027
Motif name: Osr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00108105

Alignment:
DHBHGCTACKGTHDHH
----GCKGCYG-----

Original motif Reverse complement motif
Consensus sequence: HHDHACRGTAGCHVHD Consensus sequence: DHBHGCTACKGTHDHH


Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.00905497

Alignment:
BBYVVCAGCTGCBVHHD
-------GCKGCYG---

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB


Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.0111061

Alignment:
BHDCVCAGCAGGHVD
-----CMGCRGC---

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB


Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0126897

Alignment:
HHDCVCAGCAKGVVD
-----CMGCRGC---

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD


Motif ID: UP00006
Motif name: Zic3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.0137402

Alignment:
DVHCYTGCTGTGHDH
---GCKGCYG-----

Original motif Reverse complement motif
Consensus sequence: DDDCACAGCAKGHVD Consensus sequence: DVHCYTGCTGTGHDH


Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.0253076

Alignment:
DMTWDGTCAGCADWTTH
-------CMGCRGC---

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH


Motif ID: UP00193
Motif name: Rhox11_1765.2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 7
Similarity score: 0.0292668

Alignment:
WVVHWTWACAGCGBHBT
--------CMGCRGC--

Original motif Reverse complement motif
Consensus sequence: AVDVCGCTGTWAWDVVW Consensus sequence: WVVHWTWACAGCGBHBT


Motif ID: UP00193
Motif name: Rhox11_2205.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0298083

Alignment:
WVVHWTWACAGCGHHVT
--------CMGCRGC--

Original motif Reverse complement motif
Consensus sequence: AVDHCGCTGTWAWDVVW Consensus sequence: WVVHWTWACAGCGHHVT


Motif ID: UP00122
Motif name: Tgif1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0332976

Alignment:
DABWWTGACAGCTVVBD
--------CMGCRGC--

Original motif Reverse complement motif
Consensus sequence: DABWWTGACAGCTVVBD Consensus sequence: DBVVAGCTGTCAWWVTH


Dataset #: 1 Motif ID: 7 Motif name: Motif 7

Original motif Reverse complement motif
Consensus sequence: CCCRCCCC Consensus sequence: GGGGMGGG

Best Matches for Motif ID 7 (Highest to Lowest)

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0

Alignment:
DHHDGGGCGRGGKHBH
---GGGGMGGG-----

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH


Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.00490878

Alignment:
BVVHAGGGGGCGRDHHB
------GGGGMGGG---

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0101441

Alignment:
HCCGCCCCCGCAHB
CCCRCCCC------

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH


Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0106908

Alignment:
DBCCCCCCCCCCMYC
---CCCRCCCC----

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD


Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0152681

Alignment:
HBBBCCGCCCCWHHHV
---CCCRCCCC-----

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.0252184

Alignment:
MHHHWHYTMCCHCCCACVAABVH
--------CCCRCCCC-------

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0258528

Alignment:
HVBCCCCCCCCMHHHB
--CCCRCCCC------

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD


Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0318239

Alignment:
BHHDTCCCACTCBDBV
-----CCCRCCCC---

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.0333599

Alignment:
HGDHVHKGACCACCCGGBGBGDB
--------CCCRCCCC-------

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0336185

Alignment:
HHHHDGGGGCGGDBHDV
-----GGGGMGGG----

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV


Dataset #: 1 Motif ID: 8 Motif name: Motif 8

Original motif Reverse complement motif
Consensus sequence: CTGGGA Consensus sequence: TCCCAG

Best Matches for Motif ID 8 (Highest to Lowest)

Motif ID: UP00033
Motif name: Zfp410_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0

Alignment:
DVDDATGGGATGKMDDV
----CTGGGA-------

Original motif Reverse complement motif
Consensus sequence: DVDDATGGGATGKMDDV Consensus sequence: BDDYYCATCCCATDDBD


Motif ID: UP00216
Motif name: Obox1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.000600574

Alignment:
DHDGTTAATCCCCKTDD
--------TCCCAG---

Original motif Reverse complement motif
Consensus sequence: DDARGGGGATTAACDHH Consensus sequence: DHDGTTAATCCCCKTDD


Motif ID: UP00229
Motif name: Otx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 6
Similarity score: 0.0140775

Alignment:
VHHWATTAATCCCMDHH
---------TCCCAG--

Original motif Reverse complement motif
Consensus sequence: DDDRGGGATTAATWHHB Consensus sequence: VHHWATTAATCCCMDHH


Motif ID: UP00160
Motif name: Obox3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.0142192

Alignment:
HHWGTTAATCCCCCBBH
--------TCCCAG---

Original motif Reverse complement motif
Consensus sequence: HBVGGGGGATTAACWHH Consensus sequence: HHWGTTAATCCCCCBBH


Motif ID: UP00239
Motif name: Obox2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0184594

Alignment:
HTARTTAATCCCCCKBD
--------TCCCAG---

Original motif Reverse complement motif
Consensus sequence: DBRGGGGGATTAAMTAH Consensus sequence: HTARTTAATCCCCCKBD


Motif ID: UP00416
Motif name: Fli1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.018604

Alignment:
DHDACCGGAAKTBBVV
----CTGGGA------

Original motif Reverse complement motif
Consensus sequence: VBBVAYTTCCGGTDDH Consensus sequence: DHDACCGGAAKTBBVV


Motif ID: UP00411
Motif name: Erg
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0196433

Alignment:
BDDACCGGAAKTVBVB
----CTGGGA------

Original motif Reverse complement motif
Consensus sequence: VBBVAYTTCCGGTDDB Consensus sequence: BDDACCGGAAKTVBVB


Motif ID: UP00413
Motif name: Elf4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0196806

Alignment:
HAWYCCGGAAGTHBBD
----CTGGGA------

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGKWTH Consensus sequence: HAWYCCGGAAGTHBBD


Motif ID: UP00143
Motif name: Dobox5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 6
Similarity score: 0.0199632

Alignment:
DDHVGGGATTAATHDTH
--CTGGGA---------

Original motif Reverse complement motif
Consensus sequence: DDHVGGGATTAATHDTH Consensus sequence: DADHATTAATCCCBHHH


Motif ID: UP00265
Motif name: Pitx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 6
Similarity score: 0.0210625

Alignment:
GBHDGCTAATCCCCCB
---------TCCCAG-

Original motif Reverse complement motif
Consensus sequence: VGGGGGATTAGCDDBC Consensus sequence: GBHDGCTAATCCCCCB


Dataset #: 2 Motif ID: 26 Motif name: ArntAhr

Original motif Reverse complement motif
Consensus sequence: YGCGTG Consensus sequence: CACGCM

Best Matches for Motif ID 26 (Highest to Lowest)

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
------YGCGTG-----------

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00002
Motif name: Sp4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.00183587

Alignment:
HHDGBCACGCCTWDB
-----CACGCM----

Original motif Reverse complement motif
Consensus sequence: BDWAGGCGTGBCHHD Consensus sequence: HHDGBCACGCCTWDB


Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.00348048

Alignment:
HDGTCGCGTGDCVB
----YGCGTG----

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB


Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 6
Similarity score: 0.00526158

Alignment:
TCDAMVBGACGCMAKDDDVBBD
-------CACGCM---------

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD


Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.00558171

Alignment:
HBGYGTGTGTGCVRVD
---YGCGTG-------

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD


Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.00702416

Alignment:
HDYTTGCACACGDHBH
--------CACGCM--

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH


Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 6
Similarity score: 0.0123233

Alignment:
DDRMHBACGCGYGCGTDGBBDB
-------YGCGTG---------

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD


Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0141579

Alignment:
HCCGCCCCCGCAHB
------CACGCM--

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 6
Similarity score: 0.0144485

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
-------YGCGTG----------

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.0172109

Alignment:
VHYTCCDWCCGCGTCMMTHWHV
---------YGCGTG-------

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV


Dataset #: 2 Motif ID: 33 Motif name: HIF1AARNT

Original motif Reverse complement motif
Consensus sequence: VBACGTGV Consensus sequence: VCACGTBV

Best Matches for Motif ID 33 (Highest to Lowest)

Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0

Alignment:
HDYTTGCACACGDHBH
-------VCACGTBV-

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH


Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.000574345

Alignment:
HHVBABCACGTGSTHD
-----VCACGTBV---

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 8
Similarity score: 0.00642455

Alignment:
YDYBDHTMCACGTGGADDBMDGT
-------VBACGTGV--------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00084
Motif name: Gmeb1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0131171

Alignment:
BVVDVRYACGTRYVBHB
-----VBACGTGV----

Original motif Reverse complement motif
Consensus sequence: BHBBKKACGTMMVDBVB Consensus sequence: BVVDVRYACGTRYVBHB


Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.014006

Alignment:
RDHDBVDTCACGTGASBHVHDH
-------VCACGTBV-------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM


Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0184296

Alignment:
VBHHVCAGGTGCDVDHD
----VBACGTGV-----

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB


Motif ID: UP00068
Motif name: Eomes_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0188154

Alignment:
VVBVCKACACCTHVBV
------VCACGTBV--

Original motif Reverse complement motif
Consensus sequence: VBVDAGGTGTYGVBBV Consensus sequence: VVBVCKACACCTHVBV


Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 8
Similarity score: 0.0189568

Alignment:
DHVDTGTGCACAYAHDH
-VBACGTGV--------

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD


Motif ID: UP00042
Motif name: Gm397_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.0198987

Alignment:
HHRTATGTGCACATHHD
--VBACGTGV-------

Original motif Reverse complement motif
Consensus sequence: HHDATGTGCACATAMDH Consensus sequence: HHRTATGTGCACATHHD


Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.021967

Alignment:
BBGHCACGCGACDD
---VCACGTBV---

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB


Results created by MOTIFSIM on 11-20-2016 21:31:13
Runtime: 756.479 seconds

MOTIFSIM is written by Ngoc Tam L. Tran
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