Best Matches in Database for Each Motif (Highest to Lowest)
| Dataset #: 1 | Motif ID: 1 | Motif name: Motif 1 |
| Original motif | Reverse complement motif |
| Consensus sequence: GGCGGGGC | Consensus sequence: GCCCCGCC |
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Best Matches for Motif ID 1 (Highest to Lowest)
| Motif ID: | UP00093 |
| Motif name: | Klf7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 6 |
| Number of overlap: | 8 |
| Similarity score: | 0 |
Alignment:
HBDRCCMCGCCCHHHD
---GCCCCGCC-----
| Original motif | Reverse complement motif |
| Consensus sequence: HBDRCCMCGCCCHHHD | Consensus sequence: DHHDGGGCGRGGKHBH |
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| Motif ID: | UP00000 |
| Motif name: | Smad3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 7 |
| Number of overlap: | 8 |
| Similarity score: | 0.00617043 |
Alignment:
BHBHDTGGCGGGGBDHD
------GGCGGGGC---
| Original motif | Reverse complement motif |
| Consensus sequence: DHHBCCCCGCCAHHBHB | Consensus sequence: BHBHDTGGCGGGGBDHD |
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| Motif ID: | UP00002 |
| Motif name: | Sp4_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 8 |
| Similarity score: | 0.0145996 |
Alignment:
BDWAGGCGTGBCHHD
----GGCGGGGC---
| Original motif | Reverse complement motif |
| Consensus sequence: BDWAGGCGTGBCHHD | Consensus sequence: HHDGBCACGCCTWDB |
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| Motif ID: | UP00002 |
| Motif name: | Sp4_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 8 |
| Similarity score: | 0.0233506 |
Alignment:
BDHHMCGCCCCCTHVBB
-GCCCCGCC--------
| Original motif | Reverse complement motif |
| Consensus sequence: BDHHMCGCCCCCTHVBB | Consensus sequence: BVVHAGGGGGCGRDHHB |
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| Motif ID: | UP00024 |
| Motif name: | Glis2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 8 |
| Similarity score: | 0.0291232 |
Alignment:
HHHVGACCCCCCVBRD
----GCCCCGCC----
| Original motif | Reverse complement motif |
| Consensus sequence: HHHVGACCCCCCVBRD | Consensus sequence: HKBBGGGGGGTCVHHH |
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| Motif ID: | UP00022 |
| Motif name: | Zfp740_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 6 |
| Number of overlap: | 8 |
| Similarity score: | 0.0338469 |
Alignment:
BHHDYGGGGGGGGBVD
-----GGCGGGGC---
| Original motif | Reverse complement motif |
| Consensus sequence: HVBCCCCCCCCMHHHB | Consensus sequence: BHHDYGGGGGGGGBVD |
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| Motif ID: | UP00007 |
| Motif name: | Egr1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 8 |
| Similarity score: | 0.0361147 |
Alignment:
VHTGCGGGGGCGGH
---GGCGGGGC---
| Original motif | Reverse complement motif |
| Consensus sequence: HCCGCCCCCGCAHB | Consensus sequence: VHTGCGGGGGCGGH |
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| Motif ID: | UP00539 |
| Motif name: | Gli2_v016060_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 8 |
| Number of overlap: | 8 |
| Similarity score: | 0.0374146 |
Alignment:
DTVBDDRGACCACCCAGDWDGBH
-------GCCCCGCC--------
| Original motif | Reverse complement motif |
| Consensus sequence: DTVBDDRGACCACCCAGDWDGBH | Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH |
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| Motif ID: | UP00540 |
| Motif name: | Gli3_v015681_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 9 |
| Number of overlap: | 8 |
| Similarity score: | 0.0376381 |
Alignment:
ABBBBVVRGACCACCCACRDBBM
--------GCCCCGCC-------
| Original motif | Reverse complement motif |
| Consensus sequence: ABBBBVVRGACCACCCACRDBBM | Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT |
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| Motif ID: | UP00021 |
| Motif name: | Zfp281_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 8 |
| Similarity score: | 0.0392043 |
Alignment:
GKRGGGGGGGGGGBD
---GGCGGGGC----
| Original motif | Reverse complement motif |
| Consensus sequence: DBCCCCCCCCCCMYC | Consensus sequence: GKRGGGGGGGGGGBD |
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| Dataset #: 3 | Motif ID: 24 | Motif name: SP1 |
| Original motif | Reverse complement motif |
| Consensus sequence: CCCCKCCCCC | Consensus sequence: GGGGGYGGGG |
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Best Matches for Motif ID 24 (Highest to Lowest)
| Motif ID: | UP00021 |
| Motif name: | Zfp281_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 10 |
| Similarity score: | 0.0231018 |
Alignment:
DBCCCCCCCCCCMYC
--CCCCKCCCCC---
| Original motif | Reverse complement motif |
| Consensus sequence: DBCCCCCCCCCCMYC | Consensus sequence: GKRGGGGGGGGGGBD |
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| Motif ID: | UP00093 |
| Motif name: | Klf7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0303207 |
Alignment:
HBDRCCMCGCCCHHHD
----CCCCKCCCCC--
| Original motif | Reverse complement motif |
| Consensus sequence: HBDRCCMCGCCCHHHD | Consensus sequence: DHHDGGGCGRGGKHBH |
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| Motif ID: | UP00033 |
| Motif name: | Zfp410_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 10 |
| Similarity score: | 0.0323007 |
Alignment:
HHHHDGGGGCGGDBHDV
----GGGGGYGGGG---
| Original motif | Reverse complement motif |
| Consensus sequence: BHHBHCCGCCCCDHHHH | Consensus sequence: HHHHDGGGGCGGDBHDV |
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| Motif ID: | UP00099 |
| Motif name: | Ascl2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0340973 |
Alignment:
HVDVGGGHGGGGDBHB
--GGGGGYGGGG----
| Original motif | Reverse complement motif |
| Consensus sequence: BHVDCCCCDCCCBDBH | Consensus sequence: HVDVGGGHGGGGDBHB |
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| Motif ID: | UP00043 |
| Motif name: | Bcl6b_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 10 |
| Similarity score: | 0.0351051 |
Alignment:
BHHHWGGGGCGGBBVH
----GGGGGYGGGG--
| Original motif | Reverse complement motif |
| Consensus sequence: HBBBCCGCCCCWHHHV | Consensus sequence: BHHHWGGGGCGGBBVH |
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| Motif ID: | UP00539 |
| Motif name: | Gli2_v016060_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 7 |
| Number of overlap: | 10 |
| Similarity score: | 0.0390437 |
Alignment:
HDBABCGBKRGYGGCGMSBHAK
------GGGGGYGGGG------
| Original motif | Reverse complement motif |
| Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH | Consensus sequence: HDBABCGBKRGYGGCGMSBHAK |
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| Motif ID: | UP00540 |
| Motif name: | Gli3_v016060_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 10 |
| Similarity score: | 0.0393358 |
Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
-------GGGGGYGGGG------
| Original motif | Reverse complement motif |
| Consensus sequence: VYWVVHCRCCACMCACGAHSBHH | Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV |
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| Motif ID: | UP00000 |
| Motif name: | Smad3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 10 |
| Similarity score: | 0.0413863 |
Alignment:
DHHBCCCCGCCAHHBHB
----CCCCKCCCCC---
| Original motif | Reverse complement motif |
| Consensus sequence: DHHBCCCCGCCAHHBHB | Consensus sequence: BHBHDTGGCGGGGBDHD |
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| Motif ID: | UP00022 |
| Motif name: | Zfp740_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 10 |
| Similarity score: | 0.0418947 |
Alignment:
HVBCCCCCCCCMHHHB
---CCCCKCCCCC---
| Original motif | Reverse complement motif |
| Consensus sequence: HVBCCCCCCCCMHHHB | Consensus sequence: BHHDYGGGGGGGGBVD |
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| Motif ID: | UP00002 |
| Motif name: | Sp4_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0420708 |
Alignment:
BDHHMCGCCCCCTHVBB
--CCCCKCCCCC-----
| Original motif | Reverse complement motif |
| Consensus sequence: BDHHMCGCCCCCTHVBB | Consensus sequence: BVVHAGGGGGCGRDHHB |
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| Dataset #: 3 | Motif ID: 25 | Motif name: TFAP2A |
| Original motif | Reverse complement motif |
| Consensus sequence: GCCBBVRGS | Consensus sequence: SCMVBBGGC |
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Best Matches for Motif ID 25 (Highest to Lowest)
| Motif ID: | UP00010 |
| Motif name: | Tcfap2b_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 9 |
| Similarity score: | 0.0115546 |
Alignment:
HHKGCCYSRGGCWAD
---GCCBBVRGS---
| Original motif | Reverse complement motif |
| Consensus sequence: DTWGCCKSMGGCRHH | Consensus sequence: HHKGCCYSRGGCWAD |
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| Motif ID: | UP00010 |
| Motif name: | Tcfap2b_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 9 |
| Similarity score: | 0.0150447 |
Alignment:
DYGCCYBARGGCAH
--GCCBBVRGS---
| Original motif | Reverse complement motif |
| Consensus sequence: DYGCCYBARGGCAH | Consensus sequence: HTGCCMTVKGGCMD |
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| Motif ID: | UP00005 |
| Motif name: | Tcfap2a_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 9 |
| Similarity score: | 0.0151527 |
Alignment:
WDHSCCYSRGGSRAD
---GCCBBVRGS---
| Original motif | Reverse complement motif |
| Consensus sequence: WDHSCCYSRGGSRAD | Consensus sequence: DTMSCCKSMGGSHDW |
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| Motif ID: | UP00087 |
| Motif name: | Tcfap2c_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 9 |
| Similarity score: | 0.016909 |
Alignment:
WHHSCCYSRGGSDAD
---GCCBBVRGS---
| Original motif | Reverse complement motif |
| Consensus sequence: WHHSCCYSRGGSDAD | Consensus sequence: DTHSCCKSMGGSHHW |
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| Motif ID: | UP00087 |
| Motif name: | Tcfap2c_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 9 |
| Similarity score: | 0.0170259 |
Alignment:
BHGCCCDAGGGCWD
--GCCBBVRGS---
| Original motif | Reverse complement motif |
| Consensus sequence: BHGCCCDAGGGCWD | Consensus sequence: HWGCCCTDGGGCDB |
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| Motif ID: | UP00028 |
| Motif name: | Tcfap2e_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 9 |
| Similarity score: | 0.0198854 |
Alignment:
HHHGCCTSAGGCDAD
---GCCBBVRGS---
| Original motif | Reverse complement motif |
| Consensus sequence: HHHGCCTSAGGCDAD | Consensus sequence: DTHGCCTSAGGCHHH |
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| Motif ID: | UP00000 |
| Motif name: | Smad3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 9 |
| Number of overlap: | 9 |
| Similarity score: | 0.0203681 |
Alignment:
BHBHDTGGCGGGGBDHD
SCMVBBGGC--------
| Original motif | Reverse complement motif |
| Consensus sequence: DHHBCCCCGCCAHHBHB | Consensus sequence: BHBHDTGGCGGGGBDHD |
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| Motif ID: | UP00003 |
| Motif name: | E2F3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 9 |
| Similarity score: | 0.0217064 |
Alignment:
BBBDYTGGCGCCKWDBD
SCMVBBGGC--------
| Original motif | Reverse complement motif |
| Consensus sequence: HBHWYGGCGCCAMDVBB | Consensus sequence: BBBDYTGGCGCCKWDBD |
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| Motif ID: | UP00005 |
| Motif name: | Tcfap2a_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 9 |
| Similarity score: | 0.0234775 |
Alignment:
HHRCCBBWGGDCDB
--GCCBBVRGS---
| Original motif | Reverse complement motif |
| Consensus sequence: HHRCCBBWGGDCDB | Consensus sequence: BDGHCCWBVGGKDH |
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| Motif ID: | UP00093 |
| Motif name: | Klf7_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 9 |
| Similarity score: | 0.026642 |
Alignment:
VVDBATACGCCCHAHHD
--------GCCBBVRGS
| Original motif | Reverse complement motif |
| Consensus sequence: VVDBATACGCCCHAHHD | Consensus sequence: DHDTHGGGCGTATBHBB |
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| Dataset #: 3 | Motif ID: 29 | Motif name: HIF1AARNT |
| Original motif | Reverse complement motif |
| Consensus sequence: VBACGTGV | Consensus sequence: VCACGTBV |
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Best Matches for Motif ID 29 (Highest to Lowest)
| Motif ID: | UP00097 |
| Motif name: | Mtf1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 8 |
| Similarity score: | 0 |
Alignment:
HDYTTGCACACGDHBH
-------VCACGTBV-
| Original motif | Reverse complement motif |
| Consensus sequence: DBDHCGTGTGCAAMDH | Consensus sequence: HDYTTGCACACGDHBH |
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| Motif ID: | UP00060 |
| Motif name: | Max_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 8 |
| Similarity score: | 0.000574345 |
Alignment:
HHVBABCACGTGSTHD
-----VCACGTBV---
| Original motif | Reverse complement motif |
| Consensus sequence: DDASCACGTGBTBVDD | Consensus sequence: HHVBABCACGTGSTHD |
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| Motif ID: | UP00050 |
| Motif name: | Bhlhb2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 9 |
| Number of overlap: | 8 |
| Similarity score: | 0.00642455 |
Alignment:
YDYBDHTMCACGTGGADDBMDGT
-------VBACGTGV--------
| Original motif | Reverse complement motif |
| Consensus sequence: YDYBDHTMCACGTGGADDBMDGT | Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM |
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| Motif ID: | UP00084 |
| Motif name: | Gmeb1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 8 |
| Similarity score: | 0.0131171 |
Alignment:
BVVDVRYACGTRYVBHB
-----VBACGTGV----
| Original motif | Reverse complement motif |
| Consensus sequence: BHBBKKACGTMMVDBVB | Consensus sequence: BVVDVRYACGTRYVBHB |
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| Motif ID: | UP00050 |
| Motif name: | Bhlhb2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 8 |
| Number of overlap: | 8 |
| Similarity score: | 0.014006 |
Alignment:
RDHDBVDTCACGTGASBHVHDH
-------VCACGTBV-------
| Original motif | Reverse complement motif |
| Consensus sequence: RDHDBVDTCACGTGASBHVHDH | Consensus sequence: DDHBHBSTCACGTGAHBBDHHM |
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| Motif ID: | UP00046 |
| Motif name: | Tcfe2a_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 8 |
| Similarity score: | 0.0184296 |
Alignment:
VBHHVCAGGTGCDVDHD
----VBACGTGV-----
| Original motif | Reverse complement motif |
| Consensus sequence: VBHHVCAGGTGCDVDHD | Consensus sequence: DHDBHGCACCTGBDDVB |
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| Motif ID: | UP00068 |
| Motif name: | Eomes_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 8 |
| Similarity score: | 0.0188154 |
Alignment:
VVBVCKACACCTHVBV
------VCACGTBV--
| Original motif | Reverse complement motif |
| Consensus sequence: VBVDAGGTGTYGVBBV | Consensus sequence: VVBVCKACACCTHVBV |
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| Motif ID: | UP00026 |
| Motif name: | Zscan4_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 9 |
| Number of overlap: | 8 |
| Similarity score: | 0.0189568 |
Alignment:
DHVDTGTGCACAYAHDH
-VBACGTGV--------
| Original motif | Reverse complement motif |
| Consensus sequence: DHVDTGTGCACAYAHDH | Consensus sequence: HDHTMTGTGCACADVHD |
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| Motif ID: | UP00042 |
| Motif name: | Gm397_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 8 |
| Number of overlap: | 8 |
| Similarity score: | 0.0198987 |
Alignment:
HHRTATGTGCACATHHD
--VBACGTGV-------
| Original motif | Reverse complement motif |
| Consensus sequence: HHDATGTGCACATAMDH | Consensus sequence: HHRTATGTGCACATHHD |
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| Motif ID: | UP00060 |
| Motif name: | Max_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 8 |
| Similarity score: | 0.021967 |
Alignment:
BBGHCACGCGACDD
---VCACGTBV---
| Original motif | Reverse complement motif |
| Consensus sequence: BBGHCACGCGACDD | Consensus sequence: HDGTCGCGTGDCVB |
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| Dataset #: 3 | Motif ID: 32 | Motif name: ArntAhr |
| Original motif | Reverse complement motif |
| Consensus sequence: YGCGTG | Consensus sequence: CACGCM |
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Best Matches for Motif ID 32 (Highest to Lowest)
| Motif ID: | UP00400 |
| Motif name: | Zif268 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 7 |
| Number of overlap: | 6 |
| Similarity score: | 0 |
Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
------YGCGTG-----------
| Original motif | Reverse complement motif |
| Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV | Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB |
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| Motif ID: | UP00002 |
| Motif name: | Sp4_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 6 |
| Number of overlap: | 6 |
| Similarity score: | 0.00183587 |
Alignment:
HHDGBCACGCCTWDB
-----CACGCM----
| Original motif | Reverse complement motif |
| Consensus sequence: BDWAGGCGTGBCHHD | Consensus sequence: HHDGBCACGCCTWDB |
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| Motif ID: | UP00060 |
| Motif name: | Max_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 6 |
| Similarity score: | 0.00348048 |
Alignment:
HDGTCGCGTGDCVB
----YGCGTG----
| Original motif | Reverse complement motif |
| Consensus sequence: BBGHCACGCGACDD | Consensus sequence: HDGTCGCGTGDCVB |
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| Motif ID: | UP00527 |
| Motif name: | Foxn4_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 8 |
| Number of overlap: | 6 |
| Similarity score: | 0.00526158 |
Alignment:
TCDAMVBGACGCMAKDDDVBBD
-------CACGCM---------
| Original motif | Reverse complement motif |
| Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA | Consensus sequence: TCDAMVBGACGCMAKDDDVBBD |
 |
 |
| Motif ID: | UP00042 |
| Motif name: | Gm397_second |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 8 |
| Number of overlap: | 6 |
| Similarity score: | 0.00558171 |
Alignment:
HBGYGTGTGTGCVRVD
---YGCGTG-------
| Original motif | Reverse complement motif |
| Consensus sequence: DVMVGCACACACKCVH | Consensus sequence: HBGYGTGTGTGCVRVD |
 |
 |
| Motif ID: | UP00097 |
| Motif name: | Mtf1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 9 |
| Number of overlap: | 6 |
| Similarity score: | 0.00702416 |
Alignment:
HDYTTGCACACGDHBH
--------CACGCM--
| Original motif | Reverse complement motif |
| Consensus sequence: DBDHCGTGTGCAAMDH | Consensus sequence: HDYTTGCACACGDHBH |
| |
|
| Motif ID: | UP00526 |
| Motif name: | Foxn1_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 8 |
| Number of overlap: | 6 |
| Similarity score: | 0.0123233 |
Alignment:
DDRMHBACGCGYGCGTDGBBDB
-------YGCGTG---------
| Original motif | Reverse complement motif |
| Consensus sequence: DDRMHBACGCGYGCGTDGBBDB | Consensus sequence: BDVBCDACGCKCGCGTBHRKHD |
 |
 |
| Motif ID: | UP00007 |
| Motif name: | Egr1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 6 |
| Similarity score: | 0.0141579 |
Alignment:
HCCGCCCCCGCAHB
------CACGCM--
| Original motif | Reverse complement motif |
| Consensus sequence: HCCGCCCCCGCAHB | Consensus sequence: VHTGCGGGGGCGGH |
| |
|
| Motif ID: | UP00538 |
| Motif name: | Gli1_v016060_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 11 |
| Number of overlap: | 6 |
| Similarity score: | 0.0144485 |
Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
-------YGCGTG----------
| Original motif | Reverse complement motif |
| Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH | Consensus sequence: HGDHVHKGACCACCCGGBGBGDB |
 |
 |
| Motif ID: | UP00527 |
| Motif name: | Foxn4_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 8 |
| Number of overlap: | 6 |
| Similarity score: | 0.0172109 |
Alignment:
VHYTCCDWCCGCGTCMMTHWHV
---------YGCGTG-------
| Original motif | Reverse complement motif |
| Consensus sequence: VDWDARRGACGCGGWHGGAKHV | Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV |
 |
 |
| Dataset #: 4 | Motif ID: 37 | Motif name: tkAAATAATAtw |
| Original motif | Reverse complement motif |
| Consensus sequence: HDAAATAATAHW | Consensus sequence: WHTATTATTTDH |
 |
 |
Best Matches for Motif ID 37 (Highest to Lowest)
| Motif ID: | UP00121 |
| Motif name: | Hoxd10 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.00353196 |
Alignment:
HDDDATTTTATTKVRDB
---WHTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: VDKVYAATAAAATDDDH | Consensus sequence: HDDDATTTTATTKVRDB |
 |
 |
| Motif ID: | UP00244 |
| Motif name: | Tlx2 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.00646023 |
Alignment:
WWDTTATTAATTHATTV
--WHTATTATTTDH---
| Original motif | Reverse complement motif |
| Consensus sequence: BAATHAATTAATAAHWW | Consensus sequence: WWDTTATTAATTHATTV |
 |
 |
| Motif ID: | UP00051 |
| Motif name: | Sox8_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 12 |
| Similarity score: | 0.0120674 |
Alignment:
DDDHDAACAATWBATDD
--HDAAATAATAHW---
| Original motif | Reverse complement motif |
| Consensus sequence: DDATBWATTGTTHHDDD | Consensus sequence: DDDHDAACAATWBATDD |
 |
 |
| Motif ID: | UP00180 |
| Motif name: | Hoxd13 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.0123772 |
Alignment:
HDHHTTTTATTKKHDD
--WHTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: HDHYYAATAAAAHHHH | Consensus sequence: HDHHTTTTATTKKHDD |
 |
 |
| Motif ID: | UP00037 |
| Motif name: | Zfp105_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.0129559 |
Alignment:
HHHTTRTTDTTTKDH
--WHTATTATTTDH-
| Original motif | Reverse complement motif |
| Consensus sequence: HDYAAAHAAMAADHD | Consensus sequence: HHHTTRTTDTTTKDH |
 |
 |
| Motif ID: | UP00064 |
| Motif name: | Sox18_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 12 |
| Similarity score: | 0.0130138 |
Alignment:
HHDHABAACAATHBWV
---HDAAATAATAHW-
| Original motif | Reverse complement motif |
| Consensus sequence: BWBHATTGTTBTHDHH | Consensus sequence: HHDHABAACAATHBWV |
 |
 |
| Motif ID: | UP00255 |
| Motif name: | Dbx1 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 12 |
| Similarity score: | 0.0131034 |
Alignment:
HARTHAATTAWTAVDHD
---HDAAATAATAHW--
| Original motif | Reverse complement motif |
| Consensus sequence: HARTHAATTAWTAVDHD | Consensus sequence: DHDBTAWTAATTHAKTH |
 |
 |
| Motif ID: | UP00024 |
| Motif name: | Glis2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 12 |
| Similarity score: | 0.0140433 |
Alignment:
HDTATTAHTAAAVV
WHTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: HDTATTAHTAAAVV | Consensus sequence: BVTTTAHTAATADH |
 |
 |
| Motif ID: | UP00075 |
| Motif name: | Sox15_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.0143532 |
Alignment:
DHVKMWATTGTTHDHDH
---WHTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: HDDDDAACAATWRRBHD | Consensus sequence: DHVKMWATTGTTHDHDH |
 |
 |
| Motif ID: | UP00096 |
| Motif name: | Sox13_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.014607 |
Alignment:
WHDWWATTGTTCKDHD
--WHTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: DHDRGAACAATWWDHW | Consensus sequence: WHDWWATTGTTCKDHD |
 |
 |
| Dataset #: 4 | Motif ID: 41 | Motif name: wwAAATAATAtw |
| Original motif | Reverse complement motif |
| Consensus sequence: HDAAATAATADD | Consensus sequence: DDTATTATTTDH |
 |
 |
Best Matches for Motif ID 41 (Highest to Lowest)
| Motif ID: | UP00244 |
| Motif name: | Tlx2 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 12 |
| Similarity score: | 0.00576686 |
Alignment:
WWDTTATTAATTHATTV
--DDTATTATTTDH---
| Original motif | Reverse complement motif |
| Consensus sequence: BAATHAATTAATAAHWW | Consensus sequence: WWDTTATTAATTHATTV |
| |
|
| Motif ID: | UP00121 |
| Motif name: | Hoxd10 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 12 |
| Similarity score: | 0.00673636 |
Alignment:
HDDDATTTTATTKVRDB
---DDTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: VDKVYAATAAAATDDDH | Consensus sequence: HDDDATTTTATTKVRDB |
| |
|
| Motif ID: | UP00180 |
| Motif name: | Hoxd13 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.00685179 |
Alignment:
HDHHTTTTATTKKHDD
--DDTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: HDHYYAATAAAAHHHH | Consensus sequence: HDHHTTTTATTKKHDD |
| |
|
| Motif ID: | UP00073 |
| Motif name: | Foxa2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 12 |
| Similarity score: | 0.0108327 |
Alignment:
VVDAATAACAAAVVB
HDAAATAATADD---
| Original motif | Reverse complement motif |
| Consensus sequence: VVDAATAACAAAVVB | Consensus sequence: BVVTTTGTTATTDBB |
 |
 |
| Motif ID: | UP00134 |
| Motif name: | Hoxb13 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.0121723 |
Alignment:
VDHWTTTTATTGGDKB
--DDTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: VRHCCAATAAAAWHHV | Consensus sequence: VDHWTTTTATTGGDKB |
 |
 |
| Motif ID: | UP00255 |
| Motif name: | Dbx1 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 12 |
| Similarity score: | 0.0133808 |
Alignment:
HARTHAATTAWTAVDHD
---HDAAATAATADD--
| Original motif | Reverse complement motif |
| Consensus sequence: HARTHAATTAWTAVDHD | Consensus sequence: DHDBTAWTAATTHAKTH |
| |
|
| Motif ID: | UP00034 |
| Motif name: | Sox7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 12 |
| Similarity score: | 0.0144702 |
Alignment:
HHBDHDDAACAATDRHHHHHBW
----HDAAATAATADD------
| Original motif | Reverse complement motif |
| Consensus sequence: HHBDHDDAACAATDRHHHHHBW | Consensus sequence: WBHHHHHMDATTGTTHDHDVHH |
 |
 |
| Motif ID: | UP00051 |
| Motif name: | Sox8_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 12 |
| Similarity score: | 0.0145614 |
Alignment:
DDATBWATTGTTHHDDD
---DDTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: DDATBWATTGTTHHDDD | Consensus sequence: DDDHDAACAATWBATDD |
| |
|
| Motif ID: | UP00024 |
| Motif name: | Glis2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 12 |
| Similarity score: | 0.0148858 |
Alignment:
BVTTTAHTAATADH
--HDAAATAATADD
| Original motif | Reverse complement motif |
| Consensus sequence: HDTATTAHTAAAVV | Consensus sequence: BVTTTAHTAATADH |
| |
|
| Motif ID: | UP00096 |
| Motif name: | Sox13_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.014968 |
Alignment:
DHDRGAACAATWWDHW
--HDAAATAATADD--
| Original motif | Reverse complement motif |
| Consensus sequence: DHDRGAACAATWWDHW | Consensus sequence: WHDWWATTGTTCKDHD |
| |
|
| Dataset #: 4 | Motif ID: 45 | Motif name: wbgTAAATAww |
| Original motif | Reverse complement motif |
| Consensus sequence: DBGTAAATAHD | Consensus sequence: DHTATTTACBD |
 |
 |
Best Matches for Motif ID 45 (Highest to Lowest)
| Motif ID: | UP00242 |
| Motif name: | Hoxc8 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0 |
Alignment:
AHDHTAATTACHHHHV
--DHTATTTACBD---
| Original motif | Reverse complement motif |
| Consensus sequence: BHDDDGTAATTAHHDT | Consensus sequence: AHDHTAATTACHHHHV |
 |
 |
| Motif ID: | UP00073 |
| Motif name: | Foxa2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.00453517 |
Alignment:
HHWAWGTAAAYAAAVDB
---DBGTAAATAHD---
| Original motif | Reverse complement motif |
| Consensus sequence: HHWAWGTAAAYAAAVDB | Consensus sequence: BDVTTTKTTTACWTWHH |
 |
 |
| Motif ID: | UP00039 |
| Motif name: | Foxj3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.00490457 |
Alignment:
HDHADGTAAACAAAVVH
---DBGTAAATAHD---
| Original motif | Reverse complement motif |
| Consensus sequence: HDHADGTAAACAAAVVH | Consensus sequence: DVVTTTGTTTACDTHDH |
 |
 |
| Motif ID: | UP00041 |
| Motif name: | Foxj1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 11 |
| Similarity score: | 0.00656547 |
Alignment:
HDHRTAAACAAAHDDD
-DBGTAAATAHD----
| Original motif | Reverse complement motif |
| Consensus sequence: HDHRTAAACAAAHDDD | Consensus sequence: DDDHTTTGTTTAMHDH |
 |
 |
| Motif ID: | UP00182 |
| Motif name: | Hoxa6 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.0086354 |
Alignment:
DTHHGGTAATTAYCYT
---DBGTAAATAHD--
| Original motif | Reverse complement motif |
| Consensus sequence: AMGKTAATTACCHHAD | Consensus sequence: DTHHGGTAATTAYCYT |
 |
 |
| Motif ID: | UP00260 |
| Motif name: | Hoxc6 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.0092156 |
Alignment:
BRHVKTAATTAMBDVVD
---DHTATTTACBD---
| Original motif | Reverse complement motif |
| Consensus sequence: BRHVKTAATTAMBDVVD | Consensus sequence: DBBDVYTAATTARBHKB |
 |
 |
| Motif ID: | UP00164 |
| Motif name: | Hoxa7_2668.2 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.00942246 |
Alignment:
VVHDDTAATTAHTDDBC
---DHTATTTACBD---
| Original motif | Reverse complement motif |
| Consensus sequence: VVHDDTAATTAHTDDBC | Consensus sequence: GBDDAHTAATTADHHVV |
 |
 |
| Motif ID: | UP00259 |
| Motif name: | Hoxb6 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 11 |
| Similarity score: | 0.00949005 |
Alignment:
VDVGTAATTACBDAWW
-DBGTAAATAHD----
| Original motif | Reverse complement motif |
| Consensus sequence: WWTDBGTAATTACVDB | Consensus sequence: VDVGTAATTACBDAWW |
 |
 |
| Motif ID: | UP00254 |
| Motif name: | Pou2f1 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 11 |
| Similarity score: | 0.00998499 |
Alignment:
WABKTAATTAHKHHHD
-DBGTAAATAHD----
| Original motif | Reverse complement motif |
| Consensus sequence: DHDHRHTAATTARBTW | Consensus sequence: WABKTAATTAHKHHHD |
 |
 |
| Motif ID: | UP00110 |
| Motif name: | Dlx4 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.0107458 |
Alignment:
GHVRGTAATTATDVVGV
--DBGTAAATAHD----
| Original motif | Reverse complement motif |
| Consensus sequence: BCVVDATAATTACMVHC | Consensus sequence: GHVRGTAATTATDVVGV |
 |
 |
| Dataset #: 5 | Motif ID: 46 | Motif name: TFW1 |
| Original motif | Reverse complement motif |
| Consensus sequence: GTCGCG | Consensus sequence: CGCGAC |
 |
 |
Best Matches for Motif ID 46 (Highest to Lowest)
| Motif ID: | UP00065 |
| Motif name: | Zfp161_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 9 |
| Number of overlap: | 6 |
| Similarity score: | 0 |
Alignment:
GYCGCGCARBGCVB
GTCGCG--------
| Original motif | Reverse complement motif |
| Consensus sequence: GYCGCGCARBGCVB | Consensus sequence: VVGCVMTGCGCGKC |
 |
 |
| Motif ID: | UP00060 |
| Motif name: | Max_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 6 |
| Similarity score: | 0.00875457 |
Alignment:
BBGHCACGCGACDD
------CGCGAC--
| Original motif | Reverse complement motif |
| Consensus sequence: BBGHCACGCGACDD | Consensus sequence: HDGTCGCGTGDCVB |
| |
|
| Motif ID: | UP00003 |
| Motif name: | E2F3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 6 |
| Number of overlap: | 6 |
| Similarity score: | 0.0102952 |
Alignment:
WHSGCGCGCCHTDHB
----CGCGAC-----
| Original motif | Reverse complement motif |
| Consensus sequence: VHDADGGCGCGCSHW | Consensus sequence: WHSGCGCGCCHTDHB |
 |
 |
| Motif ID: | UP00526 |
| Motif name: | Foxn1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 6 |
| Similarity score: | 0.0119605 |
Alignment:
WHVBVVMACGCGCGTCDYHWDH
----------CGCGAC------
| Original motif | Reverse complement motif |
| Consensus sequence: WHVBVVMACGCGCGTCDYHWDH | Consensus sequence: HDWHMHGACGCGCGTRBVVBHW |
 |
 |
| Motif ID: | UP00527 |
| Motif name: | Foxn4_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 10 |
| Number of overlap: | 6 |
| Similarity score: | 0.014366 |
Alignment:
VDWDARRGACGCGGWHGGAKHV
-------GTCGCG---------
| Original motif | Reverse complement motif |
| Consensus sequence: VDWDARRGACGCGGWHGGAKHV | Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV |
| |
|
| Motif ID: | UP00065 |
| Motif name: | Zfp161_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 10 |
| Number of overlap: | 6 |
| Similarity score: | 0.0143989 |
Alignment:
DMMDGMGCGCGCGCHD
---------CGCGAC-
| Original motif | Reverse complement motif |
| Consensus sequence: DDGCGCGCGCRCHYRD | Consensus sequence: DMMDGMGCGCGCGCHD |
 |
 |
| Motif ID: | UP00001 |
| Motif name: | E2F2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 6 |
| Similarity score: | 0.0147239 |
Alignment:
HHVGCGCGCCKTDHB
----CGCGAC-----
| Original motif | Reverse complement motif |
| Consensus sequence: VHDARGGCGCGCVHH | Consensus sequence: HHVGCGCGCCKTDHB |
 |
 |
| Motif ID: | UP00002 |
| Motif name: | Sp4_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 6 |
| Similarity score: | 0.0222574 |
Alignment:
HHDGBCACGCCTWDB
---GTCGCG------
| Original motif | Reverse complement motif |
| Consensus sequence: BDWAGGCGTGBCHHD | Consensus sequence: HHDGBCACGCCTWDB |
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| Motif ID: | UP00049 |
| Motif name: | Sp100_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 6 |
| Similarity score: | 0.0300795 |
Alignment:
BBCGTCGHBTAAWDB
---GTCGCG------
| Original motif | Reverse complement motif |
| Consensus sequence: BBCGTCGHBTAAWDB | Consensus sequence: BDWTTAVDCGACGBV |
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| Motif ID: | UP00000 |
| Motif name: | Smad3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 6 |
| Similarity score: | 0.0317992 |
Alignment:
BHBHDTGGCGGGGBDHD
----GTCGCG-------
| Original motif | Reverse complement motif |
| Consensus sequence: DHHBCCCCGCCAHHBHB | Consensus sequence: BHBHDTGGCGGGGBDHD |
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| Dataset #: 5 | Motif ID: 47 | Motif name: TFW2 |
| Original motif | Reverse complement motif |
| Consensus sequence: SCGCGCGG | Consensus sequence: CCGCGCGS |
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Best Matches for Motif ID 47 (Highest to Lowest)
| Motif ID: | UP00526 |
| Motif name: | Foxn1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 8 |
| Number of overlap: | 8 |
| Similarity score: | 0 |
Alignment:
HDWHMHGACGCGCGTRBVVBHW
-------CCGCGCGS-------
| Original motif | Reverse complement motif |
| Consensus sequence: WHVBVVMACGCGCGTCDYHWDH | Consensus sequence: HDWHMHGACGCGCGTRBVVBHW |
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| Motif ID: | UP00065 |
| Motif name: | Zfp161_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 8 |
| Similarity score: | 0.00228411 |
Alignment:
VVGCVMTGCGCGKC
-----CCGCGCGS-
| Original motif | Reverse complement motif |
| Consensus sequence: GYCGCGCARBGCVB | Consensus sequence: VVGCVMTGCGCGKC |
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| Motif ID: | UP00003 |
| Motif name: | E2F3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 8 |
| Similarity score: | 0.00337853 |
Alignment:
WHSGCGCGCCHTDHB
-CCGCGCGS------
| Original motif | Reverse complement motif |
| Consensus sequence: VHDADGGCGCGCSHW | Consensus sequence: WHSGCGCGCCHTDHB |
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| Motif ID: | UP00001 |
| Motif name: | E2F2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 8 |
| Similarity score: | 0.00399923 |
Alignment:
HHVGCGCGCCKTDHB
-CCGCGCGS------
| Original motif | Reverse complement motif |
| Consensus sequence: VHDARGGCGCGCVHH | Consensus sequence: HHVGCGCGCCKTDHB |
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| Motif ID: | UP00065 |
| Motif name: | Zfp161_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 8 |
| Similarity score: | 0.00484534 |
Alignment:
DDGCGCGCGCRCHYRD
----CCGCGCGS----
| Original motif | Reverse complement motif |
| Consensus sequence: DDGCGCGCGCRCHYRD | Consensus sequence: DMMDGMGCGCGCGCHD |
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| Motif ID: | UP00526 |
| Motif name: | Foxn1_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 7 |
| Number of overlap: | 8 |
| Similarity score: | 0.0149577 |
Alignment:
BDVBCDACGCKCGCGTBHRKHD
------CCGCGCGS--------
| Original motif | Reverse complement motif |
| Consensus sequence: DDRMHBACGCGYGCGTDGBBDB | Consensus sequence: BDVBCDACGCKCGCGTBHRKHD |
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| Motif ID: | UP00400 |
| Motif name: | Zif268 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 6 |
| Number of overlap: | 8 |
| Similarity score: | 0.0194485 |
Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
-----SCGCGCGG----------
| Original motif | Reverse complement motif |
| Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV | Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB |
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| Motif ID: | UP00022 |
| Motif name: | Zfp740_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 6 |
| Number of overlap: | 8 |
| Similarity score: | 0.0230299 |
Alignment:
DDDTWCCCCCCGGDRVH
-----CCGCGCGS----
| Original motif | Reverse complement motif |
| Consensus sequence: DDDTWCCCCCCGGDRVH | Consensus sequence: HVKDCCGGGGGGWADDD |
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| Motif ID: | UP00007 |
| Motif name: | Egr1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 6 |
| Number of overlap: | 8 |
| Similarity score: | 0.0247841 |
Alignment:
HCCGCCCCCGCAHB
-----CCGCGCGS-
| Original motif | Reverse complement motif |
| Consensus sequence: HCCGCCCCCGCAHB | Consensus sequence: VHTGCGGGGGCGGH |
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| Motif ID: | UP00007 |
| Motif name: | Egr1_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 7 |
| Number of overlap: | 8 |
| Similarity score: | 0.0249557 |
Alignment:
BHHDTCCCACTCBDBV
------CCGCGCGS--
| Original motif | Reverse complement motif |
| Consensus sequence: BBHBGAGTGGGAHHDB | Consensus sequence: BHHDTCCCACTCBDBV |
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