**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.1 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 5 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Phylogenetic tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # DREME_DM230.txt 1 1 MEME_DM230.txt 20 2 PScanChIP_DM230.txt 14 3 RSAT_peak-motifs_DM230.txt 10 4 W-ChIPMotifs_DM230.txt 11 5 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** *************************************************************** Combined Motifs for Top Best Match Motif ID 1 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 csGCCCCGCCCCsc Original Motif Reverse Complement GGCGGGGC BBGGGGCGGGGCVD BBGGGGCGGGGCVD Direction: Forward Position #: 5 Overlap #: 8 Alignment: ----GGCGGGGC-- BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Reverse Complement BBGGGGCGGGGCVD BBGGGGCGGGGCGGB BBGGGGCGGGGCSGGGGCGGGGCVD Direction: Forward Position #: 12 Overlap #: 4 Alignment: -----------BBGGGGCGGGGCVD BBGGGGCGGGGCGGB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif HVGCCCCGCCCCSGCCCCGCCCCBB CSKCCCCGCCCCSY HVGCCCCGCCCCGCCCCCGCCCCBB Direction: Forward Position #: 6 Overlap #: 14 Alignment: HVGCCCCGCCCCSGCCCCGCCCCBB -----CSKCCCCGCCCCSY------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Original Motif BBGGGGCGGGGGCGGGGCGGGGCVD GGMGGRGGCGGVGC BBGGGGCGGGGGCGGGGSGGGGCGGVGC Direction: Forward Position #: 15 Overlap #: 11 Alignment: BBGGGGCGGGGGCGGGGCGGGGCVD--- --------------GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Reverse Complement Reverse Complement GCVCCGCCCCSCCCCGCCCCCGCCCCBB GCCYCMCCCD GCVCCGCCCSCCCCCCCCHCCGCCCCBB Direction: Forward Position #: 10 Overlap #: 10 Alignment: GCVCCGCCCCSCCCCGCCCCCGCCCCBB ---------GCCYCMCCCD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif GCVCCGCCCSCCCCCCCCHCCGCCCCBB BBVGCCBVGGCCTV GCVCCGCCVSSCCCMGSCCYSGCCCCBB Direction: Forward Position #: 8 Overlap #: 14 Alignment: GCVCCGCCCSCCCCCCCCHCCGCCCCBB -------BBVGCCBVGGCCTV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 Combined Motif Original Motif Reverse Complement GCVCCGCCVSSCCCMGSCCYSGCCCCBB CGCGBMGCCG GCVCCGCCVSGCSBMGSCSYSGCCCCBB Direction: Forward Position #: 10 Overlap #: 10 Alignment: GCVCCGCCVSSCCCMGSCCYSGCCCCBB ---------CGCGBMGCCG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Reverse Complement Original Motif BBGGGGCSMSGSCYBSGCSVGGCGGVGC CGGVGCCGCVGC BBGGGGCSMSGSCYBSGCGGVGCSGVGSC Direction: Forward Position #: 18 Overlap #: 11 Alignment: BBGGGGCSMSGSCYBSGCSVGGCGGVGC- -----------------CGGVGCCGCVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif BBGGGGCSMSGSCYBSGCGGVGCSGVGSC DGVBCABTGDWGCGKRRCSR BBGGGGCSMSGSCYBSGVGGVRCBGVRGCGKRRCSR Direction: Forward Position #: 17 Overlap #: 13 Alignment: BBGGGGCSMSGSCYBSGCGGVGCSGVGSC------- ----------------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 Combined Motif Reverse Complement Reverse Complement MSGKKRCGCMBCBGMVCCVCSBMGSCSYSGCCCCBB YCGCCCACGCH MSGKKRCGCMBCBGMVYCVCCCASGCVYSGCCCCBB Direction: Forward Position #: 17 Overlap #: 11 Alignment: MSGKKRCGCMBCBGMVCCVCSBMGSCSYSGCCCCBB ----------------YCGCCCACGCH--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Reverse Complement BBGGGGCSMVGCSTGGGVGKVRCBGVRGCGKRYCSR CHCCBCCKMCTCCKCM BBGGGGCSMVGCSTGGGVGKVRCHSMDSCGHVTCCKCM Direction: Forward Position #: 23 Overlap #: 14 Alignment: BBGGGGCSMVGCSTGGGVGKVRCBGVRGCGKRYCSR-- ----------------------CHCCBCCKMCTCCKCM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 2 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 TFM2 Original Motif Original Motif RGRAGARRGARRAR RGRGGAGRRGGHGGDG RGRGRAGRRGGVRRRG Direction: Backward Position #: 1 Overlap #: 14 Alignment: --RGRAGARRGARRAR RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Original Motif RGRGRAGRRGGVRRRG DGVBCABTGDWGCGKRRCSR DGVBCABTGDWGCGKRRMGRAGRRGGVRRRG Direction: Forward Position #: 16 Overlap #: 5 Alignment: ---------------RGRGRAGRRGGVRRRG DGVBCABTGDWGCGKRRCSR----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Original Motif DGVBCABTGDWGCGKRRMGRAGRRGGVRRRG HDWVAAAHAAAAAMAAAMWWWHBWA DGVBCABTGDWGCGKRRMVRAVAARVARRARMAAAMWWWHBWA Direction: Forward Position #: 19 Overlap #: 13 Alignment: DGVBCABTGDWGCGKRRMGRAGRRGGVRRRG------------ ------------------HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif TWVHWWWYTTTYKTKKTVKTTVTKVRMMRCGCWDCABTGBBCD CYYCBBCYYYTCCHCCTYYY TWVHWWWYTTTYKTKKTVKTTVTKVRCMVCVCHHCHBYBBBCDYYY Direction: Forward Position #: 27 Overlap #: 17 Alignment: TWVHWWWYTTTYKTKKTVKTTVTKVRMMRCGCWDCABTGBBCD--- --------------------------CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Reverse Complement KKKDGBBBKVDGHDGVGBRGMVRAVAARVARRARMAAAMWWWHBWA ABAAAAAAWHAAAAARAW KKKDGBBBKVDGHDGVGBRGMVRAVAARVADAAAVAAAHAAAADDAW Direction: Forward Position #: 30 Overlap #: 17 Alignment: KKKDGBBBKVDGHDGVGBRGMVRAVAARVARRARMAAAMWWWHBWA- -----------------------------ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement WTDDTTTTHTTTBTTTHTVKTTVTKVRCMVCVCHHCHBYBBBCDYYY GCVCCGCCMCCYCC WTDDTTTTHTTTBTTTHTVKTTVTKVRCMVCGCHCCGCCVCCYHCYY Direction: Forward Position #: 32 Overlap #: 14 Alignment: WTDDTTTTHTTTBTTTHTVKTTVTKVRCMVCVCHHCHBYBBBCDYYY -------------------------------GCVCCGCCMCCYCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Reverse Complement KKGDKGGVGGCGGDGCGBRGMVRAVAARVADAAAVAAAHAAAADDAW TWAAWTTVTGAAAAAHWW KKGDKGGVGGCGGDGCGBRGMVRAVAARVWDAAWHWAWDAAAAADWW Direction: Forward Position #: 30 Overlap #: 18 Alignment: KKGDKGGVGGCGGDGCGBRGMVRAVAARVADAAAVAAAHAAAADDAW -----------------------------TWAAWTTVTGAAAAAHWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif KKGDKGGVGGCGGDGCGBRGMVRAVAARVWDAAWHWAWDAAAAADWW AWAAAWTWAAASWA KKGDKGGVGGCGGDGCGBRGMVRAVAARVWDAWAWAAWDAAAVWAWW Direction: Forward Position #: 32 Overlap #: 14 Alignment: KKGDKGGVGGCGGDGCGBRGMVRAVAARVWDAAWHWAWDAAAAADWW -------------------------------AWAAAWTWAAASWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif KKGDKGGVGGCGGDGCGBRGMVRAVAARVWDAWAWAAWDAAAVWAWW ATKAAWTTTTRMAABAHHTW KKGDKGGVGGCGGDGCGBRGMVRAVAARVWTWWAWWTTWAAAMDAAWTW Direction: Forward Position #: 30 Overlap #: 18 Alignment: KKGDKGGVGGCGGDGCGBRGMVRAVAARVWDAWAWAAWDAAAVWAWW-- -----------------------------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif WAWTTDYTTTWAAWWTWWAWVKTTVTKVRCMVCGCHCCGCCVCCYHCYY CSKCCCCGCCCCSY WAWTTDYTTTWAAWWTWWAWVKTTVTKVRCMVCGCHCBCCCCSCCCCYY Direction: Forward Position #: 36 Overlap #: 14 Alignment: WAWTTDYTTTWAAWWTWWAWVKTTVTKVRCMVCGCHCCGCCVCCYHCYY -----------------------------------CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 3 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 TFM11 Original Motif Original Motif AWAAAWTWAAASWA HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAAHAAAWWAAAAVWWWHBWA Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------AWAAAWTWAAASWA----- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif TWVHWWWBTTTTWWTTTHTTTVWBH WTKTTTTTHWTTTTTTBT TWVHWWWBTTTTWWTTTTTTTVWTTTTTTBT Direction: Forward Position #: 14 Overlap #: 12 Alignment: TWVHWWWBTTTTWWTTTHTTTVWBH------ -------------WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif ABAAAAAAWBAAAAAAAWWAAAAVWWWHBWA ATKAAWTTTTRMAABAHHTW ABAAAAAAWBAAAAAAAAWDAAAHTWWDHAABAHHTW Direction: Forward Position #: 18 Overlap #: 14 Alignment: ABAAAAAAWBAAAAAAAWWAAAAVWWWHBWA------ -----------------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif ABAAAAAAWBAAAAAAAAWDAAAHTWWDHAABAHHTW AAATRWTAAAATCA AAATRWTAAAATMABAAAAAAAAWDAAAHTWWDHAABAHHTW Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----ABAAAAAAWBAAAAAAAAWDAAAHTWWDHAABAHHTW AAATRWTAAAATCA---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif AAATRWTAAAATMABAAAAAAAAWDAAAHTWWDHAABAHHTW WWHTTTTTCABAAWTTWA AAATRWTAAAATMABAAAAAAAAWDAWWHTWTDHMABAAHTWWA Direction: Forward Position #: 27 Overlap #: 16 Alignment: AAATRWTAAAATMABAAAAAAAAWDAAAHTWWDHAABAHHTW-- --------------------------WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Original Motif AAATRWTAAAATMABAAAAAAAAWDAWWHTWTDHMABAAHTWWA AWTAAATAYAATTT AAATRWTAAAATMABAAAWWAAATAHAATTTTDHMABAAHTWWA Direction: Forward Position #: 18 Overlap #: 14 Alignment: AAATRWTAAAATMABAAAAAAAAWDAWWHTWTDHMABAAHTWWA -----------------AWTAAATAYAATTT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement TWWAHTTVTRHDAAAATTHTATTTWWTTTVTRATTTTAWKATTT TTTDAWATATHATT TWWAHTTVTRHDAAAATTHTATTTWWTTTBTDAWWTWWWDWTTT Direction: Forward Position #: 29 Overlap #: 14 Alignment: TWWAHTTVTRHDAAAATTHTATTTWWTTTVTRATTTTAWKATTT ----------------------------TTTDAWATATHATT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Reverse Complement AAAWHWWWAWWTHAVAAAWWAAATAHAATTTTDHMABAAHTWWA WWTAKTTCDKAATT AAAWHWWWAWWTHAVAAAWWAAATAHAAWTTWDTYMDDAATTWA Direction: Forward Position #: 29 Overlap #: 14 Alignment: AAAWHWWWAWWTHAVAAAWWAAATAHAATTTTDHMABAAHTWWA ----------------------------WWTAKTTCDKAATT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Original Motif Original Motif AAAWHWWWAWWTHAVAAAWWAAATAHAAWTTWDTYMDDAATTWA RGRAGARRGARRAR AAAWHADAADADVAVRRARWAAATAHAAWTTWDTYMDDAATTWA Direction: Forward Position #: 6 Overlap #: 14 Alignment: AAAWHWWWAWWTHAVAAAWWAAATAHAAWTTWDTYMDDAATTWA -----RGRAGARRGARRAR------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Reverse Complement Reverse Complement TWAATTDDRMADWAAWTTHTATTTWKTKKBTVDTDTTHTDWTTT DDTATTATTTDH TWAATTDDRMADWAAWTTHTATTTWKTKKHDTATTWTHTDWTTT Direction: Forward Position #: 30 Overlap #: 12 Alignment: TWAATTDDRMADWAAWTTHTATTTWKTKKBTVDTDTTHTDWTTT -----------------------------DDTATTATTTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 4 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 TFM11 Original Motif Original Motif AAAAWTTRCWT HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAAHAAAAAAAAAWWTAYHWA Direction: Backward Position #: 2 Overlap #: 11 Alignment: -------------AAAAWTTRCWT- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Reverse Complement TWHKTAWWTTTTTTTTTHTTTVWBH WAHHTVTTYKAAAAWTTRAT TWHKTAWWTTTTTWTTTHTTTBWHAAWTTRAT Direction: Forward Position #: 13 Overlap #: 13 Alignment: TWHKTAWWTTTTTTTTTHTTTVWBH------- ------------WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Reverse Complement ATKAAWTTHWBAAAHAAAWAAAAAWWTAYHWA ABAAAAAAWHAAAAARAW ATKAAWTTHWBAAAHAAAWDAAAAAWWDHDAAARAW Direction: Forward Position #: 19 Overlap #: 14 Alignment: ATKAAWTTHWBAAAHAAAWAAAAAWWTAYHWA---- ------------------ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Reverse Complement WTKTTTDHDWWTTTTTDWTTTHTTTBWHAAWTTRAT AAATTKTATTTAWT WTKTTTDHDWAWWTTKTATTTATTTBWHAAWTTRAT Direction: Forward Position #: 11 Overlap #: 14 Alignment: WTKTTTDHDWWTTTTTDWTTTHTTTBWHAAWTTRAT ----------AAATTKTATTTAWT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Reverse Complement WTKTTTDHDWAWWTTKTATTTATTTBWHAAWTTRAT TTTDAWATATHATT WTKTTTDHDWAWWTTKTATTTATTTDAWAWWTWRWT Direction: Forward Position #: 23 Overlap #: 14 Alignment: WTKTTTDHDWAWWTTKTATTTATTTBWHAAWTTRAT ----------------------TTTDAWATATHATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Reverse Complement WTKTTTDHDWAWWTTKTATTTATTTDAWAWWTWRWT TGATTTTAWKATTT WTKTTTDHDWATRWTTTWWTTATTTDAWAWWTWRWT Direction: Forward Position #: 12 Overlap #: 14 Alignment: WTKTTTDHDWAWWTTKTATTTATTTDAWAWWTWRWT -----------TGATTTTAWKATTT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Original Motif AWKWAWWTWTHAAATAAWWAAAWMATWDHDAAARAW ACAAWTRATTTTGA ACAAWTAATTTTGAAATAAWWAAAWMATWDHDAAARAW Direction: Forward Position #: 3 Overlap #: 12 Alignment: --AWKWAWWTWTHAAATAAWWAAAWMATWDHDAAARAW ACAAWTRATTTTGA------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif ACAAWTAATTTTGAAATAAWWAAAWMATWDHDAAARAW WWHTTTTTCABAAWTTWA ACAAWTAATTTTGAAATAAWWAAAWHWTTDHHAHAAAWTWA Direction: Forward Position #: 24 Overlap #: 15 Alignment: ACAAWTAATTTTGAAATAAWWAAAWMATWDHDAAARAW--- -----------------------WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Original Motif Original Motif ACAAWTAATTTTGAAATAAWWAAAWHWTTDHHAHAAAWTWA DBGTAAATAHD ACAAWTAATTTTGAAATAAWWAAAWHWWDDTAAAWAWHTWA Direction: Forward Position #: 28 Overlap #: 11 Alignment: ACAAWTAATTTTGAAATAAWWAAAWHWTTDHHAHAAAWTWA ---------------------------DBGTAAATAHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Reverse Complement ACAAWTAATTTTGAAATAAWWAAAWHWWDDTAAAWAWHTWA TWSTTTWAWTTTWT ACAAWTAATTTTGAAATAAWWAAAWHTWVTTWWAWWWTWTA Direction: Forward Position #: 27 Overlap #: 14 Alignment: ACAAWTAATTTTGAAATAAWWAAAWHWWDDTAAAWAWHTWA --------------------------TWSTTTWAWTTTWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 5 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Motif 3 Reverse Complement Reverse Complement AAATTKTATTTAWT TWSTTTWAWTTTWT WAATTTTATTTWWT Direction: Backward Position #: 1 Overlap #: 14 Alignment: AAATTKTATTTAWT TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Reverse Complement WAATTTTATTTWWT TGATTTTAWKATTT TRATTTTAWTWTTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: WAATTTTATTTWWT TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Original Motif AAAWAWTAAAATMA HDWVAAAHAAAAAMAAAMWWWHBWA AAAWAWTAAAAWMAAAMAAAMWWWHBWA Direction: Forward Position #: 4 Overlap #: 11 Alignment: AAAWAWTAAAATMA-------------- ---HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif TWVHWWWYTTTYTTTYWTTTTAWTWTTT WTKTTTTTHWTTTTTTBT TWVHWWWYTTTYTTTTWTTTTDTDWTTTTTTBT Direction: Forward Position #: 16 Overlap #: 13 Alignment: TWVHWWWYTTTYTTTYWTTTTAWTWTTT----- ---------------WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Reverse Complement TWVHWWWYTTTYTTTTWTTTTDTDWTTTTTTBT WWTAKTTCDKAATT TWVHWWWYTTTYTTTTWTTTTWTTWTTTYTKAWTT Direction: Forward Position #: 22 Overlap #: 12 Alignment: TWVHWWWYTTTYTTTTWTTTTDTDWTTTTTTBT-- ---------------------WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TWVHWWWYTTTYTTTTWTTTTWTTWTTTYTKAWTT WWHTTTTTCABAAWTTWA TWVHWWWYTTTYTTTTWTTTTWWTWTTTYWKAATTTWA Direction: Forward Position #: 21 Overlap #: 15 Alignment: TWVHWWWYTTTYTTTTWTTTTWTTWTTTYTKAWTT--- --------------------WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Original Motif TWAAATTRWKAAAWAWWAAAAWAAAAMAAAMWWWHBWA ACAAWTRATTTTGA ACAWWWAATTTTGAAAWAWWAAAAWAAAAMAAAMWWWHBWA Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---TWAAATTRWKAAAWAWWAAAAWAAAAMAAAMWWWHBWA ACAAWTRATTTTGA--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement TWVHWWWYTTTYTTTTWTTTTWWTWTTTCAAAATTWWWTGT TTTDAWATATHATT TWVHWWWYTTTYTTTTWTTTTWWTWTTTYDAAATWWWATKT Direction: Forward Position #: 27 Overlap #: 14 Alignment: TWVHWWWYTTTYTTTTWTTTTWWTWTTTCAAAATTWWWTGT --------------------------TTTDAWATATHATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Reverse Complement TWVHWWWYTTTYTTTTWTTTTWWTWTTTYDAAATWWWATKT WAHHTVTTYKAAAAWTTRAT TWVHWWWYTTTYTTTTWTTTTWWTWWTTTDWWWTWWAATTTRAT Direction: Forward Position #: 25 Overlap #: 17 Alignment: TWVHWWWYTTTYTTTTWTTTTWWTWTTTYDAAATWWWATKT--- ------------------------WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Original Motif ATKAAATTWWAWWWDAAAWWAWWAAAAWAAAAMAAAMWWWHBWA TTCWTAGATTAWA TTMTTAGATTAWAWWWDAAAWWAWWAAAAWAAAAMAAAMWWWHBWA Direction: Forward Position #: 3 Overlap #: 11 Alignment: --ATKAAATTWWAWWWDAAAWWAWWAAAAWAAAAMAAAMWWWHBWA TTCWTAGATTAWA--------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 6 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 TFM3 Reverse Complement Original Motif WWTAKTTCDKAATT WWHTTTTTCABAAWTTWA WWWTWKTTCWKAATTTWA Direction: Backward Position #: 4 Overlap #: 14 Alignment: -WWTAKTTCDKAATT--- WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Reverse Complement WWWTWKTTCWKAATTTWA WAHHTVTTYKAAAAWTTRAT WAHHTVTTYKAAAAWTWWWTWKTTCWKAATTTWA Direction: Forward Position #: 17 Overlap #: 4 Alignment: ----------------WWWTWKTTCWKAATTTWA WAHHTVTTYKAAAAWTTRAT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Original Motif TWAAATTRWGAARWAWWWAWTTTTYMAABAHHTW HDWVAAAHAAAAAMAAAMWWWHBWA TWAAATTRWGAARWAWWWWWWTWWWMAAWAAMWAAMWWWHBWA Direction: Forward Position #: 19 Overlap #: 16 Alignment: TWAAATTRWGAARWAWWWAWTTTTYMAABAHHTW--------- ------------------HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement TWAAATTRWGAARWAWWWWWWTWWWMAAWAAMWAAMWWWHBWA ABAAAAAAWHAAAAARAW TWAAATTRWGAARWAWWWWWWTWWWMAVAAAHAAAHAAAADDAW Direction: Forward Position #: 27 Overlap #: 17 Alignment: TWAAATTRWGAARWAWWWWWWTWWWMAAWAAMWAAMWWWHBWA- --------------------------ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Reverse Complement WTDDTTTTHTTTHTTTBTYWWWAWWWWWWTWKTTCWKAATTTWA AAATTKTATTTAWT WTDDTTTTHTTTHTTTBTYWWWAAAATTDTATTTMWTAATTTWA Direction: Forward Position #: 24 Overlap #: 14 Alignment: WTDDTTTTHTTTHTTTBTYWWWAWWWWWWTWKTTCWKAATTTWA -----------------------AAATTKTATTTAWT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Original Motif TWAAATTAWYAAATADAATTTTWWWMAVAAAHAAAHAAAADDAW AAATRWTAAAATCA TWAAATTAWYAAATAAAATDWTAAAAWCAAAHAAAHAAAADDAW Direction: Forward Position #: 16 Overlap #: 14 Alignment: TWAAATTAWYAAATADAATTTTWWWMAVAAAHAAAHAAAADDAW ---------------AAATRWTAAAATCA--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif TWAAATTAWYAAATAAAATDWTAAAAWCAAAHAAAHAAAADDAW AATHATATWTHAAA TWAAATTAWYAAATAAAATDWTAAAAWCAAWHAWAWWTHAAAAW Direction: Forward Position #: 29 Overlap #: 14 Alignment: TWAAATTAWYAAATAAAATDWTAAAAWCAAAHAAAHAAAADDAW ----------------------------AATHATATWTHAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif TWAAATTAWYAAATAAAATDWTAAAAWCAAWHAWAWWTHAAAAW AWAAAWTWAAASWA TWAAATTAWYAAATAAAATDWTAAAAWCAWAWAWWWAWAVWAAW Direction: Forward Position #: 29 Overlap #: 14 Alignment: TWAAATTAWYAAATAAAATDWTAAAAWCAAWHAWAWWTHAAAAW ----------------------------AWAAAWTWAAASWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Original Motif Reverse Complement TWAAATTAWYAAATAAAATDWTAAAAWCAWAWAWWWAWAVWAAW TWTAATCTAWGAA TWAAATTAWYAAATAWAATCTWWRAAWCAWAWAWWWAWAVWAAW Direction: Forward Position #: 14 Overlap #: 13 Alignment: TWAAATTAWYAAATAAAATDWTAAAAWCAWAWAWWWAWAVWAAW -------------TWTAATCTAWGAA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Original Motif TWAAATTAWYAAATAWAATCTWWRAAWCAWAWAWWWAWAVWAAW HDAAATAATAHW TWAAATTAWYAAATAWAATCTWWRAAWCAHDAAAWAATAHWAAW Direction: Forward Position #: 30 Overlap #: 12 Alignment: TWAAATTAWYAAATAWAATCTWWRAAWCAWAWAWWWAWAVWAAW -----------------------------HDAAATAATAHW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 7 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 csGCCCCGCCCCsc Original Motif Original Motif CSKCCCCGCCCCSY HVGCCCCGCCCCBB CSGCCCCGCCCCSB Direction: Forward Position #: 1 Overlap #: 14 Alignment: CSKCCCCGCCCCSY HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Reverse Complement VSGGGGCGGGGCSG BBGGGGCGGGGCGGB BBGGGGCGGGGCSGGGGCGGGGCSG Direction: Forward Position #: 12 Overlap #: 4 Alignment: -----------VSGGGGCGGGGCSG BBGGGGCGGGGCGGB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement BBGGGGCGGGGCSGGGGCGGGGCSG KKKAGGDGGAKKMGBBGKMG BBGGGGCGGGGCSGGGGSGGGGMBKMGBBGKMG Direction: Forward Position #: 14 Overlap #: 12 Alignment: BBGGGGCGGGGCSGGGGCGGGGCSG-------- -------------KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif BBGGGGCGGGGCSGGGGSGGGGMBKMGBBGKMG DGVBCABTGDWGCGKRRCSR BBGGGGCGGGGCSGGGGSGGGGVBBMGBBDDVSGKRRCSR Direction: Forward Position #: 21 Overlap #: 13 Alignment: BBGGGGCGGGGCSGGGGSGGGGMBKMGBBGKMG------- --------------------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif BBGGGGCGGGGCSGGGGSGGGGVBBMGBBDDVSGKRRCSR RGRGGAGRRGGHGGDG BBGGGGCGGGGCSGGGGSGGGGVBBRGDGGRGGRGGVSGRG Direction: Forward Position #: 26 Overlap #: 15 Alignment: BBGGGGCGGGGCSGGGGSGGGGVBBMGBBDDVSGKRRCSR- -------------------------RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement CMCSBCCMCCKCCDCKBBVCCCCSCCCCSGCCCCGCCCCBB GCVCCGCCMCCYCC CMCSBCCMCCKCCDCKBBVCCCCSCCSCVSCSCCGCCCCCB Direction: Forward Position #: 27 Overlap #: 14 Alignment: CMCSBCCMCCKCCDCKBBVCCCCSCCCCSGCCCCGCCCCBB --------------------------GCVCCGCCMCCYCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement BGGGGGCGGSGSVGSGGSGGGGVBBRGDGGRGGRGGVSGRG VAGGCCBBGGCVBB BGGGGGCGGSGSVGSGGSGGGGVBBRVAGGCCBVGGVVSVG Direction: Forward Position #: 27 Overlap #: 14 Alignment: BGGGGGCGGSGSVGSGGSGGGGVBBRGDGGRGGRGGVSGRG --------------------------VAGGCCBBGGCVBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Reverse Complement Reverse Complement CVSVVCCVBGGCCTVKBBVCCCCSCCSCVSCSCCGCCCCCB SGGTCACGTGACCS SGGTCACGTGACCBBGGCCTVKBBVCCCCSCCSCVSCSCCGCCCCCB Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------CVSVVCCVBGGCCTVKBBVCCCCSCCSCVSCSCCGCCCCCB SGGTCACGTGACCS--------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Reverse Complement SGGTCACGTGACCBBGGCCTVKBBVCCCCSCCSCVSCSCCGCCCCCB CCCCCTTGGGCCCC SGGTCACGTGACCBBGGCCTVKBBVCCCCSCCCCCBYSSSCCCCCCB Direction: Forward Position #: 31 Overlap #: 14 Alignment: SGGTCACGTGACCBBGGCCTVKBBVCCCCSCCSCVSCSCCGCCCCCB ------------------------------CCCCCTTGGGCCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Reverse Complement SGGTCACGTGACCBBGGCCTVKBBVCCCCSCCCCCBYSSSCCCCCCB GCVGCGGCBCCG SGGTCACGTGACCBBGGCCTVKBBVCCCCSCSCCSCBGCSCCSCCCB Direction: Forward Position #: 32 Overlap #: 12 Alignment: SGGTCACGTGACCBBGGCCTVKBBVCCCCSCCCCCBYSSSCCCCCCB -------------------------------GCVGCGGCBCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 8 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Motif 3 Reverse Complement Reverse Complement TGATTTTAWKATTT TWSTTTWAWTTTWT TGATTTTAWTWTTT Direction: Backward Position #: 1 Overlap #: 14 Alignment: TGATTTTAWKATTT TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Reverse Complement Reverse Complement AAAWAWTAAAATCA ABAAAAAAWHAAAAARAW ABAAAAAAWHAAAAAAWAWTAAAATCA Direction: Forward Position #: 14 Overlap #: 5 Alignment: -------------AAAWAWTAAAATCA ABAAAAAAWHAAAAARAW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Reverse Complement TGATTTTAWTWTTTTTTHWTTTTTTBT AAATTKTATTTAWT TGATTWWATTKTWTTTWWTTTTTTTBT Direction: Forward Position #: 6 Overlap #: 14 Alignment: TGATTTTAWTWTTTTTTHWTTTTTTBT -----AAATTKTATTTAWT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement TGATTWWATTKTWTTTWWTTTTTTTBT TWVHWWWYTTTYTTTTTHTTTVWBH TGATTWWATTKTWTTTWWTTTTTTTYTTTTHTTTVWBH Direction: Forward Position #: 14 Overlap #: 14 Alignment: TGATTWWATTKTWTTTWWTTTTTTTBT----------- -------------TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif HDWVAAAHAAAAMAAAAAAAWWAAAWARAATWWAATCA ATKAAWTTTTRMAABAHHTW HDWVAAAHAAAAMAAAAAAAWWAWDWAWWWTWWAAHHAHHTW Direction: Forward Position #: 23 Overlap #: 16 Alignment: HDWVAAAHAAAAMAAAAAAAWWAAAWARAATWWAATCA---- ----------------------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Reverse Complement WAHHTDHTTWWAWWWTWDWTWWTTTTTTTYTTTTHTTTVWBH WWTAKTTCDKAATT WAHHTDHTTWWAWWWTWDWTWWTTTWTTWKTTYTKWWTHWBH Direction: Forward Position #: 26 Overlap #: 14 Alignment: WAHHTDHTTWWAWWWTWDWTWWTTTTTTTYTTTTHTTTVWBH -------------------------WWTAKTTCDKAATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Reverse Complement WAHHTDHTTWWAWWWTWDWTWWTTTWTTWKTTYTKWWTHWBH TTTDAWATATHATT WAHHTDHTTWWAWWWTWDWTWWTTTWTTTTTWHWTAWTDWTH Direction: Forward Position #: 28 Overlap #: 14 Alignment: WAHHTDHTTWWAWWWTWDWTWWTTTWTTWKTTYTKWWTHWBH ---------------------------TTTDAWATATHATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Original Motif HAWDAWTAWHWAAAAAWAAAWWAWDWAWWWTWWAAHHAHHTW ATMACAATAAAA ATMACAATAAWAWHWAAAAAWAAAWWAWDWAWWWTWWAAHHAHHTW Direction: Forward Position #: 5 Overlap #: 8 Alignment: ----HAWDAWTAWHWAAAAAWAAAWWAWDWAWWWTWWAAHHAHHTW ATMACAATAAAA---------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Original Motif Reverse Complement ATMACAATAAWAWHWAAAAAWAAAWWAWDWAWWWTWWAAHHAHHTW TWTAATCTAWGAA TWTAATMTAASAATAAWAWHWAAAAAWAAAWWAWDWAWWWTWWAAHHAHHTW Direction: Forward Position #: 7 Overlap #: 7 Alignment: ------ATMACAATAAWAWHWAAAAAWAAAWWAWDWAWWWTWWAAHHAHHTW TWTAATCTAWGAA--------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Original Motif TWTAATMTAASAATAAWAWHWAAAAAWAAAWWAWDWAWWWTWWAAHHAHHTW ACAAWTRATTTTGA TWTAATMTAASAATAAWAWHWAAAAAWAAAACAAWTAATTTTGAAHHAHHTW Direction: Forward Position #: 31 Overlap #: 14 Alignment: TWTAATMTAASAATAAWAWHWAAAAAWAAAWWAWDWAWWWTWWAAHHAHHTW ------------------------------ACAAWTRATTTTGA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 9 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 TFM13 Reverse Complement Reverse Complement TTTDAWATATHATT WAHHTVTTYKAAAAWTTRAT WAHHTVTTTKAAAWWTWRWT Direction: Backward Position #: 1 Overlap #: 14 Alignment: ------TTTDAWATATHATT WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Reverse Complement AWKWAWWTTTYAAABAHHTW TWAAWTTVTGAAAAAHWW ATWAAWWTHTBAAAWAHWWW Direction: Forward Position #: 2 Overlap #: 18 Alignment: AWKWAWWTTTYAAABAHHTW -TWAAWTTVTGAAAAAHWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif WWWHTWTTTBAHAWWTTWAT WTKTTTTTHWTTTTTTBT WWWBTTTTTHWTWWWTTDWT Direction: Forward Position #: 2 Overlap #: 18 Alignment: WWWHTWTTTBAHAWWTTWAT -WTKTTTTTHWTTTTTTBT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Original Motif AWDAAWWWAWDAAAAAVWWW HDWVAAAHAAAAAMAAAMWWWHBWA AWDAAWWWHWVAAAHAAAWAMAAAMWWWHBWA Direction: Forward Position #: 8 Overlap #: 13 Alignment: AWDAAWWWAWDAAAAAVWWW------------ -------HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement TWVHWWWYTTTYTWTTTHTTTVWHWWWTTDWT TWSTTTWAWTTTWT TWVHWWWYTTTYTWTTTHTTTVTTTWWTTDTWT Direction: Forward Position #: 20 Overlap #: 13 Alignment: TWVHWWWYTTTYTWTTTHTTTVWHWWWTTDWT- -------------------TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Reverse Complement TWVHWWWYTTTYTWTTTHTTTVTTTWWTTDTWT WWTAKTTCDKAATT TWVHWWWYTTTYTWTTTHTTWHTWTTTYTKAATT Direction: Forward Position #: 21 Overlap #: 13 Alignment: TWVHWWWYTTTYTWTTTHTTTVTTTWWTTDTWT- --------------------WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Reverse Complement AATTRAKAAAWAHWAAHAAAWAMAAAMWWWHBWA AAATTKTATTTAWT AAATTKWATTTAWWAAWAHWAAHAAAWAMAAAMWWWHBWA Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------AATTRAKAAAWAHWAAHAAAWAMAAAMWWWHBWA AAATTKTATTTAWT-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Original Motif Original Motif AAATTKWATTTAWWAAWAHWAAHAAAWAMAAAMWWWHBWA TTCWTAGATTAWA TTCWTARATTDWATTTAWWAAWAHWAAHAAAWAMAAAMWWWHBWA Direction: Forward Position #: 6 Overlap #: 8 Alignment: -----AAATTKWATTTAWWAAWAHWAAHAAAWAMAAAMWWWHBWA TTCWTAGATTAWA-------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Reverse Complement TWVHWWWYTTTYTWTTTHTTWHTWTTWWTAAATWDAATKTAWGAA TGATTTTAWKATTT TWVHWWWYTTTYTWTTTGWTTTTAWTATTTAATWDAATKTAWGAA Direction: Forward Position #: 17 Overlap #: 14 Alignment: TWVHWWWYTTTYTWTTTHTTWHTWTTWWTAAATWDAATKTAWGAA ----------------TGATTTTAWKATTT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Reverse Complement Original Motif TTCWTAYATTDWATTAAATAWTAAAAWCAAAWAMAAAMWWWHBWA HDAAATAATADD TTCWTAYATTDWATTAAATAWTAAAAWCADWAAAWAAHAWDHBWA Direction: Forward Position #: 30 Overlap #: 12 Alignment: TTCWTAYATTDWATTAAATAWTAAAAWCAAAWAMAAAMWWWHBWA -----------------------------HDAAATAATADD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 10 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Motif 11 Reverse Complement Original Motif AWTTATGAAA ATTTWATGAAA AWTTTATGAAA Direction: Backward Position #: 1 Overlap #: 10 Alignment: -AWTTATGAAA ATTTWATGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Original Motif AWTTTATGAAA AATTYDGAARTAWW AATTTAKRAAAAWW Direction: Forward Position #: 1 Overlap #: 11 Alignment: AWTTTATGAAA--- AATTYDGAARTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif AATTTAKRAAAAWW AAATRWTAAAATCA AAWTDATAAAAWMA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AATTTAKRAAAAWW AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Original Motif Reverse Complement AAWTDATAAAAWMA TWAAWTTVTGAAAAAHWW TWAAWTTVTGAAAAAWTWATAAAAWMA Direction: Forward Position #: 14 Overlap #: 5 Alignment: -------------AAWTDATAAAAWMA TWAAWTTVTGAAAAAHWW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif TWAAWTTVTGAAAAAWTWATAAAAWMA ATKAAWTTTTRMAABAHHTW TWAAWTTVTGAAAAATTWAWWWWWWMAABAHHTW Direction: Forward Position #: 15 Overlap #: 13 Alignment: TWAAWTTVTGAAAAAWTWATAAAAWMA------- --------------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement TWAAWTTVTGAAAAATTWAWWWWWWMAABAHHTW AAATTKTATTTAWT TWAAWTTVTGAAAAWTKTATTTAWTMAABAHHTW Direction: Forward Position #: 12 Overlap #: 14 Alignment: TWAAWTTVTGAAAAATTWAWWWWWWMAABAHHTW -----------AAATTKTATTTAWT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 17 Original Motif Reverse Complement TWAAWTTVTGAAAAWTKTATTTAWTMAABAHHTW ATTCATTTTT ATTMATTTTTGAAAAWTKTATTTAWTMAABAHHTW Direction: Forward Position #: 2 Overlap #: 9 Alignment: -TWAAWTTVTGAAAAWTKTATTTAWTMAABAHHTW ATTCATTTTT------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement WAHHTVTTYAWTAAATARAWTTTTCAAAAATRAAT TTTDAWATATHATT WAHHTVTTYAWTAAATARAWTTTTBAAAWATDAWT Direction: Forward Position #: 22 Overlap #: 14 Alignment: WAHHTVTTYAWTAAATARAWTTTTCAAAAATRAAT ---------------------TTTDAWATATHATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Reverse Complement AWTDATWTTTBAAAAWTKTATTTAWTMAABAHHTW TTTTATTGTYAT TTTTATTGWTATTTBAAAAWTKTATTTAWTMAABAHHTW Direction: Forward Position #: 5 Overlap #: 8 Alignment: ----AWTDATWTTTBAAAAWTKTATTTAWTMAABAHHTW TTTTATTGTYAT--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif TTTTATTGWTATTTBAAAAWTKTATTTAWTMAABAHHTW AWAAAWTWAAASWA TTTTATTGWTATTTBAAAAWTKTAWTWAAWHAAWAVWWW Direction: Forward Position #: 25 Overlap #: 14 Alignment: TTTTATTGWTATTTBAAAAWTKTATTTAWTMAABAHHTW ------------------------AWAAAWTWAAASWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 11 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Motif 5 Reverse Complement Reverse Complement TTTCATWAAAT AAATTKTATTTAWT AAATTTYATTWAAT Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---TTTCATWAAAT AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Reverse Complement AAATTTYATTWAAT TGATTTTAWKATTT WRATTTTATTAWWT Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAATTTYATTWAAT TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Reverse Complement AWWTAATAAAATKW TWAAWTTVTGAAAAAHWW TWAAWTTVTGAAAAAWWAATAAAATKW Direction: Forward Position #: 14 Overlap #: 5 Alignment: -------------AWWTAATAAAATKW TWAAWTTVTGAAAAAHWW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Reverse Complement WYATTTTATTWWTTTTTCABAAWTTWA TTTTATTGTYAT TTTTATTKTHWTWWTTTTTCABAAWTTWA Direction: Forward Position #: 3 Overlap #: 10 Alignment: --WYATTTTATTWWTTTTTCABAAWTTWA TTTTATTGTYAT----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 18 Original Motif Original Motif TTTTATTKTHWTWWTTTTTCABAAWTTWA TTAGWTWATAA TTWKATTRTAATWWTTTTTCABAAWTTWA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTTTATTKTHWTWWTTTTTCABAAWTTWA TTAGWTWATAA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif TWAAWTTVTGAAAAAWWATTAKAATYWAA AATHATATWTHAAA TWAAWTTVTGAAAAAWWAWTAWWATYTAAAA Direction: Forward Position #: 18 Overlap #: 12 Alignment: TWAAWTTVTGAAAAAWWATTAKAATYWAA-- -----------------AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Original Motif Reverse Complement TWAAWTTVTGAAAAAWWAWTAWWATYTAAAA TWTAATCTAWGAA TWAAWTTVTKWTAAWCTAWKAAWATYTAAAA Direction: Forward Position #: 10 Overlap #: 13 Alignment: TWAAWTTVTGAAAAAWWAWTAWWATYTAAAA ---------TWTAATCTAWGAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Reverse Complement TTTTAMATWTTYWTAGWTTAWRABAAWTTWA WWTAKTTCDKAATT TTTTAMATWTTYWTAGWTTWWWABWWHTTAATT Direction: Forward Position #: 20 Overlap #: 12 Alignment: TTTTAMATWTTYWTAGWTTAWRABAAWTTWA-- -------------------WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Original Motif AATTAADWWVTWWWAAWCTAWKAAWATYTAAAA AWAAAWTWAAASWA AATTAADWWVTWWWAAWCTAADAAAATWWAAVAA Direction: Forward Position #: 21 Overlap #: 13 Alignment: AATTAADWWVTWWWAAWCTAWKAAWATYTAAAA- --------------------AWAAAWTWAAASWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif AATTAADWWVTWWWAAWCTAADAAAATWWAAVAA ATKAAWTTTTRMAABAHHTW AATTAADWWVTWWWAAWCTAWKAAAWTWWAAAAWAHHTW Direction: Forward Position #: 20 Overlap #: 15 Alignment: AATTAADWWVTWWWAAWCTAADAAAATWWAAVAA----- -------------------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 12 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 Motif 17 Original Motif Original Motif AAAACAAA AAAAATGAAT AAAAAYRAAT Direction: Backward Position #: 2 Overlap #: 8 Alignment: -AAAACAAA- AAAAATGAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Reverse Complement ATTKKTTTTT TTTTATTGTYAT WTTTDTTKTTAT Direction: Forward Position #: 1 Overlap #: 10 Alignment: ATTKKTTTTT-- TTTTATTGTYAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Original Motif WTTTDTTKTTAT ACAAWTRATTTTGA ACAATTDATTTTKAT Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---WTTTDTTKTTAT ACAAWTRATTTTGA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Original Motif ATYAAAATHAATTGT AWTAAATAYAATTT ATTAAAWWYAATTKT Direction: Forward Position #: 1 Overlap #: 14 Alignment: ATYAAAATHAATTGT AWTAAATAYAATTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Reverse Complement Original Motif AYAATTKWWTTTAAT AWAAATAA AHAAWTAAWTTTAAT Direction: Forward Position #: 1 Overlap #: 8 Alignment: AYAATTKWWTTTAAT AWAAATAA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Original Motif AHAAWTAAWTTTAAT HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAAHAAAAAMAAAMAWAADTAAWTTTAAT Direction: Forward Position #: 19 Overlap #: 7 Alignment: ------------------AHAAWTAAWTTTAAT HDWVAAAHAAAAAMAAAMWWWHBWA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement ATTAAAWTTADTTWTYTTTYTTTTTHTTTVWBH TWSTTTWAWTTTWT ATTAAAWTTADTTWTYTTTYTWDTTTTWTTWTHT Direction: Forward Position #: 21 Overlap #: 13 Alignment: ATTAAAWTTADTTWTYTTTYTTTTTHTTTVWBH- --------------------TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif ATTAAAWTTADTTWTYTTTYTWDTTTTWTTWTHT WTKTTTTTHWTTTTTTBT ATTAAAWTTADTTWTYTTTYTTBTTTTTWTTTWTTTBT Direction: Forward Position #: 21 Overlap #: 14 Alignment: ATTAAAWTTADTTWTYTTTYTWDTTTTWTTWTHT---- --------------------WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 18 Original Motif Reverse Complement ATTAAAWTTADTTWTYTTTYTTBTTTTTWTTTWTTTBT TTATWAWCTAA TTATTAAMTWWADTTWTYTTTYTTBTTTTTWTTTWTTTBT Direction: Forward Position #: 3 Overlap #: 9 Alignment: --ATTAAAWTTADTTWTYTTTYTTBTTTTTWTTTWTTTBT TTATWAWCTAA----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Original Motif ABAAAWAAAWAAAAAVAAMAAAMAWAADTWWAYTTAATAA AAATRWTAAAATCA ABAAAWAAAWAAAAATRWTAAAAWCAADTWWAYTTAATAA Direction: Forward Position #: 13 Overlap #: 14 Alignment: ABAAAWAAAWAAAAAVAAMAAAMAWAADTWWAYTTAATAA ------------AAATRWTAAAATCA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 13 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Motif 20 Reverse Complement Reverse Complement AAATCTTT AAATCTTTYAA AAATCTTTYAA Direction: Backward Position #: 4 Overlap #: 8 Alignment: AAATCTTT--- AAATCTTTYAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif AAATCTTTYAA AAATRWTAAAATCA AAATVTTWHAATCA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAATCTTTYAA--- AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Original Motif AAATVTTWHAATCA ACAAWTRATTTTGA ACAAATVWTTTWRWCA Direction: Forward Position #: 3 Overlap #: 12 Alignment: --AAATVTTWHAATCA ACAAWTRATTTTGA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Original Motif TGWKWAAAWBATTTGT TTCWTAGATTAWA TTCWTWGATTAWAWBATTTGT Direction: Forward Position #: 6 Overlap #: 8 Alignment: -----TGWKWAAAWBATTTGT TTCWTAGATTAWA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Original Motif TTCWTWGATTAWAWBATTTGT AWTAAATAYAATTT TTCWTADWWWATATDATTTGT Direction: Forward Position #: 6 Overlap #: 14 Alignment: TTCWTWGATTAWAWBATTTGT -----AWTAAATAYAATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Original Motif TTCWTADWWWATATDATTTGT AAAAWTTRCWT TTCWTAAAAWWTAYHWTTTGT Direction: Forward Position #: 6 Overlap #: 11 Alignment: TTCWTADWWWATATDATTTGT -----AAAAWTTRCWT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 17 Original Motif Reverse Complement TTCWTAAAAWWTAYHWTTTGT ATTCATTTTT ATTCATWWWWWWTAYHWTTTGT Direction: Forward Position #: 2 Overlap #: 9 Alignment: -TTCWTAAAAWWTAYHWTTTGT ATTCATTTTT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Reverse Complement ACAAAWHKTAWWWWWWATGAAT HCAGAATGTHD ACARAATGTAWWWWWWATGAAT Direction: Forward Position #: 1 Overlap #: 11 Alignment: ACAAAWHKTAWWWWWWATGAAT HCAGAATGTHD----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Reverse Complement Reverse Complement ATTCATWWWWWWTACATTKTGT TTATTTWT TTATTYWTWWWWWWTACATTKTGT Direction: Forward Position #: 3 Overlap #: 6 Alignment: --ATTCATWWWWWWTACATTKTGT TTATTTWT---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Original Motif TTATTYWTWWWWWWTACATTKTGT HDAAATAATAHW TTATTYWTWWWTAATAYATTKTGT Direction: Forward Position #: 7 Overlap #: 12 Alignment: TTATTYWTWWWWWWTACATTKTGT ------HDAAATAATAHW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 14 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Motif 17 Original Motif Original Motif AWAAATAA AAAAATGAAT AAAAATRAAT Direction: Backward Position #: 3 Overlap #: 8 Alignment: AWAAATAA-- AAAAATGAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Original Motif ATTKATTTTT AWTAAATAYAATTT AWTAAATAYAWTTWTTTTT Direction: Forward Position #: 10 Overlap #: 5 Alignment: ---------ATTKATTTTT AWTAAATAYAATTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Reverse Complement AWTAAATAYAWTTWTTTTT TCAAAATKAWTTGT AWTMAAWATDATTTKTTTT Direction: Forward Position #: 3 Overlap #: 14 Alignment: AWTAAATAYAWTTWTTTTT --TCAAAATKAWTTGT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Original Motif Original Motif AWTMAAWATDATTTKTTTT ATMACAATAAAA AATMAMAATAAWWTKTTTT Direction: Forward Position #: 2 Overlap #: 12 Alignment: AWTMAAWATDATTTKTTTT -ATMACAATAAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Reverse Complement Reverse Complement AAAAYAWWTTATTYTYATT DDTATTATTTDH AAAAHATWTTATTTTYATT Direction: Forward Position #: 5 Overlap #: 12 Alignment: AAAAYAWWTTATTYTYATT ----DDTATTATTTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Reverse Complement Original Motif AATMAAAATAAWATHTTTT HDAAATAATAHW AATHDAAATAATATHTTTT Direction: Forward Position #: 4 Overlap #: 12 Alignment: AATMAAAATAAWATHTTTT ---HDAAATAATAHW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Reverse Complement AAAAHATATTATTTDHATT ABAAAAAAWHAAAAARAW ADAAAAWAWTAWWWWVAWT Direction: Forward Position #: 1 Overlap #: 18 Alignment: AAAAHATATTATTTDHATT ABAAAAAAWHAAAAARAW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Reverse Complement Reverse Complement AWTBWWWWTAWTWTTTTDT TGATTTTAWKATTT TRATTTTAWTATTTTTTTDT Direction: Forward Position #: 2 Overlap #: 13 Alignment: -AWTBWWWWTAWTWTTTTDT TGATTTTAWKATTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Combined Motif Reverse Complement Original Motif ADAAAAAAATAWTAAAATKA TTAGWTWATAA ADAATTARWTAATAAAATKA Direction: Forward Position #: 5 Overlap #: 11 Alignment: ADAAAAAAATAWTAAAATKA ----TTAGWTWATAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 12 Original Motif Original Motif ADAATTARWTAATAAAATKA AAAACAAA AAAAYAAAWTAATAAAATKA Direction: Forward Position #: 1 Overlap #: 8 Alignment: ADAATTARWTAATAAAATKA AAAACAAA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 15 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Motif 8 Reverse Complement Reverse Complement TTTTATTGTYAT TGATTTTAWKATTT TKWTWTTRTBATTT Direction: Backward Position #: 3 Overlap #: 12 Alignment: TTTTATTGTYAT-- TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Reverse Complement Original Motif AAATVAKAAWAWYA HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAAHAAAAAAAAWMAKAADAAYA Direction: Forward Position #: 14 Overlap #: 12 Alignment: -------------AAATVAKAAWAWYA HDWVAAAHAAAAAMAAAMWWWHBWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Reverse Complement TKTTDTTRTYWTTTTTTTTHTTTVWBH AAATTKTATTTAWT AAATTKTATTTAWTTTTTTTTTHTTTVWBH Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---TKTTDTTRTYWTTTTTTTTHTTTVWBH AAATTKTATTTAWT---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement HDWVAAAHAAAAAAAAAWTAAATARAATTT TWSTTTWAWTTTWT HDWVAAAHAAAAAAAAAWTWAWTWWAATTTWT Direction: Forward Position #: 19 Overlap #: 12 Alignment: HDWVAAAHAAAAAAAAAWTAAATARAATTT-- ------------------TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif HDWVAAAHAAAAAAAAAWTWAWTWWAATTTWT WTKTTTTTHWTTTTTTBT HDWVAAAHAAAAAAAAAWWWDWTTTDATTTWTTTBT Direction: Forward Position #: 19 Overlap #: 14 Alignment: HDWVAAAHAAAAAAAAAWTWAWTWWAATTTWT---- ------------------WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Reverse Complement ABAAAWAAATDAAAWDWWWTTTTTTTTTHTTTVWBH WWTAKTTCDKAATT ABAAAWAAATDAAAWDWWWTTTTTWTTWBTTYDKAATT Direction: Forward Position #: 25 Overlap #: 12 Alignment: ABAAAWAAATDAAAWDWWWTTTTTTTTTHTTTVWBH-- ------------------------WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement AATTRDMAAVWAAWAAAAAWWWDWTTTDATTTWTTTBT TTTDAWATATHATT AATTRDMAAVWAAWAAAAAWWWDWTTTDAWWTWTTDDT Direction: Forward Position #: 25 Overlap #: 14 Alignment: AATTRDMAAVWAAWAAAAAWWWDWTTTDATTTWTTTBT ------------------------TTTDAWATATHATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif ADDAAWAWWTDAAAWDWWWTTTTTWTTWBTTYDKAATT WWHTTTTTCABAAWTTWA ADDAAWAWWTDAAAWDWWWTTTTTWWTWTTTYWBAATTTWA Direction: Forward Position #: 24 Overlap #: 15 Alignment: ADDAAWAWWTDAAAWDWWWTTTTTWTTWBTTYDKAATT--- -----------------------WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Reverse Complement ADDAAWAWWTDAAAWDWWWTTTTTWWTWTTTYWBAATTTWA TCAAAATKAWTTGT TCAAAAWKAWTTGWAAWDWWWTTTTTWWTWTTTYWBAATTTWA Direction: Forward Position #: 3 Overlap #: 12 Alignment: --ADDAAWAWWTDAAAWDWWWTTTTTWWTWTTTYWBAATTTWA TCAAAATKAWTTGT----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Combined Motif Original Motif Reverse Complement TCAAAAWKAWTTGWAAWDWWWTTTTTWWTWTTTYWBAATTTWA TTTCATWAAAT TCAAAAWKAWTTKTMATWAAATTTTTWWTWTTTYWBAATTTWA Direction: Forward Position #: 12 Overlap #: 11 Alignment: TCAAAAWKAWTTGWAAWDWWWTTTTTWWTWTTTYWBAATTTWA -----------TTTCATWAAAT--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 16 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Motif 5 Reverse Complement Original Motif TCAAAATKAWTTGT AWTAAATAYAATTT WHWAAATDHAWTKT Direction: Backward Position #: 1 Overlap #: 14 Alignment: TCAAAATKAWTTGT AWTAAATAYAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Original Motif AYAWTHDATTTWDW ATKAAWTTTTRMAABAHHTW ATKAAWTTTTRMAABAHAWWHDATTTWDW Direction: Forward Position #: 16 Overlap #: 5 Alignment: ---------------AYAWTHDATTTWDW ATKAAWTTTTRMAABAHHTW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement WHWAAATDHWWTDTVTTYKAAAAWTTRAT TTTDAWATATHATT WHWAAATDHWWTDTVTTTTWHAWWTWWAWTT Direction: Forward Position #: 18 Overlap #: 12 Alignment: WHWAAATDHWWTDTVTTYKAAAAWTTRAT-- -----------------TTTDAWATATHATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Original Motif WHWAAATDHWWTDTVTTTTWHAWWTWWAWTT HDAAATAATAHW WHWAAATDHWWTDTVTTTTWDAAATAWTATT Direction: Forward Position #: 20 Overlap #: 12 Alignment: WHWAAATDHWWTDTVTTTTWHAWWTWWAWTT -------------------HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Original Motif WHWAAATDHWWTDTVTTTTWDAAATAWTATT HDAAATAATADD WHWAAATDHWWTDTVTTTTWDAAATAATATW Direction: Forward Position #: 20 Overlap #: 12 Alignment: WHWAAATDHWWTDTVTTTTWDAAATAWTATT -------------------HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Reverse Complement Reverse Complement WATATTATTTDWAAAABAHAWWHDATTTWDW TGATTTTAWKATTT TGATTTTAWTATTTDWAAAABAHAWWHDATTTWDW Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----WATATTATTTDWAAAABAHAWWHDATTTWDW TGATTTTAWKATTT--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Original Motif Reverse Complement TGATTTTAWTATTTDWAAAABAHAWWHDATTTWDW TTTTATTGTYAT TGATTTTWTTATTKTHAWAABAHAWWHDATTTWDW Direction: Forward Position #: 7 Overlap #: 12 Alignment: TGATTTTAWTATTTDWAAAABAHAWWHDATTTWDW ------TTTTATTGTYAT----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Reverse Complement TGATTTTWTTATTKTHAWAABAHAWWHDATTTWDW WWTAKTTCDKAATT TGATTTTWTTATTKTHAWAABAHAWWTWDTTYWKAATT Direction: Forward Position #: 25 Overlap #: 11 Alignment: TGATTTTWTTATTKTHAWAABAHAWWHDATTTWDW--- ------------------------WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Reverse Complement TGATTTTWTTATTKTHAWAABAHAWWTWDTTYWKAATT AWGKAAWTTTT TGATTTTWTTATTKTHAWAABAHAWKTAATTTTTAATT Direction: Forward Position #: 24 Overlap #: 11 Alignment: TGATTTTWTTATTKTHAWAABAHAWWTWDTTYWKAATT -----------------------AWGKAAWTTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 20 Combined Motif Reverse Complement Reverse Complement AATTAAAAATTARWTDTVTTWTHAYAATAAWAAAATCA AAATCTTTYAA AATTAAAAATTARAWATCTTTTAAYAATAAWAAAATCA Direction: Forward Position #: 14 Overlap #: 11 Alignment: AATTAAAAATTARWTDTVTTWTHAYAATAAWAAAATCA -------------AAATCTTTYAA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 17 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Motif 16 Reverse Complement Original Motif ATTCATTTTT ACAAWTRATTTTGA AMWWHWDWTTTTGA Direction: Backward Position #: 4 Overlap #: 10 Alignment: -ATTCATTTTT--- ACAAWTRATTTTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement AMWWHWDWTTTTGA AAATTKTATTTAWT AAATTDTATTTWDW Direction: Forward Position #: 1 Overlap #: 14 Alignment: AMWWHWDWTTTTGA AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Original Motif WHWAAATADAATTT ATMACAATAAAA ATMAMAATAAAATTT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -WHWAAATADAATTT ATMACAATAAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Original Motif Original Motif ATMAMAATAAAATTT TTTCATAAWT TWTCAHAATWAAATTT Direction: Forward Position #: 2 Overlap #: 9 Alignment: -ATMAMAATAAAATTT TTTCATAAWT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Reverse Complement Reverse Complement AAATTTWATTHTGAWA AWGKAAWTTTT AAATKTAATTTTKAWA Direction: Forward Position #: 3 Overlap #: 11 Alignment: AAATTTWATTHTGAWA --AWGKAAWTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Reverse Complement TWTRAAAATTARATTT TGATTTTAWKATTT TWTGATWWTWADATTT Direction: Forward Position #: 3 Overlap #: 14 Alignment: TWTRAAAATTARATTT --TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Original Motif AAATHTWAWWATCAWA DHACATTCTGH DHAMATTYTRWWATCAWA Direction: Forward Position #: 3 Overlap #: 9 Alignment: --AAATHTWAWWATCAWA DHACATTCTGH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Reverse Complement DHAMATTYTRWWATCAWA WAHHTVTTYKAAAAWTTRAT WAHHTVTTYKAAAAWTWDAHATTYTRWWATCAWA Direction: Forward Position #: 17 Overlap #: 4 Alignment: ----------------DHAMATTYTRWWATCAWA WAHHTVTTYKAAAAWTTRAT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Reverse Complement WAHHTVTTYKAAAAWTWDAHATTYTRWWATCAWA TWSTTTWAWTTTWT WAHHTVTTYKAAAAWTWDAHATWVTWTWATYWTAT Direction: Forward Position #: 22 Overlap #: 13 Alignment: WAHHTVTTYKAAAAWTWDAHATTYTRWWATCAWA- ---------------------TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif WAHHTVTTYKAAAAWTWDAHATWVTWTWATYWTAT WTKTTTTTHWTTTTTTBT WAHHTVTTYKAAAAWTWDAHATDHTTTTHTTWTWTTBT Direction: Forward Position #: 21 Overlap #: 15 Alignment: WAHHTVTTYKAAAAWTWDAHATWVTWTWATYWTAT--- --------------------WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 18 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Motif 6 Reverse Complement Original Motif TTATWAWCTAA AATTYDGAARTAWW AWTWTWRAMDAAWW Direction: Forward Position #: 2 Overlap #: 11 Alignment: -TTATWAWCTAA-- AATTYDGAARTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif AWTWTWRAMDAAWW AAATRWTAAAATCA AAATDTTAAAATMAW Direction: Forward Position #: 2 Overlap #: 13 Alignment: -AWTWTWRAMDAAWW AAATRWTAAAATCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Original Motif AAATDTTAAAATMAW ATTTWATGAAA AWWTWATRAAATMAW Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAATDTTAAAATMAW ATTTWATGAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Original Motif AWWTWATRAAATMAW HDAAATAATAHW AWWWAATAAWATHAW Direction: Forward Position #: 2 Overlap #: 12 Alignment: AWWTWATRAAATMAW -HDAAATAATAHW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Original Motif AWWWAATAAWATHAW HDAAATAATADD AWDWAATAATATHAW Direction: Forward Position #: 2 Overlap #: 12 Alignment: AWWWAATAAWATHAW -HDAAATAATADD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Original Motif Reverse Complement AWDWAATAATATHAW TWAAWTTVTGAAAAAHWW TWAAWTTVTGAAAAAHWWATAATATHAW Direction: Forward Position #: 14 Overlap #: 5 Alignment: -------------AWDWAATAATATHAW TWAAWTTVTGAAAAAHWW---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif WTHATATTATWWHTTTTTCABAAWTTWA AATHATATWTHAAA WTHATATTATWWHTTTWWYWHWAWTTHAAA Direction: Forward Position #: 17 Overlap #: 12 Alignment: WTHATATTATWWHTTTTTCABAAWTTWA-- ----------------AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif WTHATATTATWWHTTTWWYWHWAWTTHAAA ATKAAWTTTTRMAABAHHTW WTHATATTATWWHTTTATBWWWWTTTDAAABAHHTW Direction: Forward Position #: 17 Overlap #: 14 Alignment: WTHATATTATWWHTTTWWYWHWAWTTHAAA------ ----------------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Original Motif Original Motif WTHATATTATWWHTTTATBWWWWTTTDAAABAHHTW TTCWTAGATTAWA TTHWTAKATTATAWHTTTATBWWWWTTTDAAABAHHTW Direction: Forward Position #: 3 Overlap #: 11 Alignment: --WTHATATTATWWHTTTATBWWWWTTTDAAABAHHTW TTCWTAGATTAWA------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Original Motif Reverse Complement TTHWTAKATTATAWHTTTATBWWWWTTTDAAABAHHTW TTTTATTGTYAT TTHWTATWTTATWKTYWTATBWWWWTTTDAAABAHHTW Direction: Forward Position #: 7 Overlap #: 12 Alignment: TTHWTAKATTATAWHTTTATBWWWWTTTDAAABAHHTW ------TTTTATTGTYAT-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 19 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Motif 9 Original Motif Original Motif TTCWTAGATTAWA AATHATATWTHAAA AWTCWTAKATTAAA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TTCWTAGATTAWA AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Reverse Complement TTTAATYTAWGAWT WAHHTVTTYKAAAAWTTRAT WAHHTVTTYKAAAATTTAATYTAWGAWT Direction: Forward Position #: 15 Overlap #: 6 Alignment: --------------TTTAATYTAWGAWT WAHHTVTTYKAAAAWTTRAT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Original Motif WAHHTVTTYKAAAATTTAATYTAWGAWT HDWVAAAHAAAAAMAAAMWWWHBWA WAHHTVTTYKAAAWWWDAAWHWAWDAAWAAMWWWHBWA Direction: Forward Position #: 14 Overlap #: 15 Alignment: WAHHTVTTYKAAAATTTAATYTAWGAWT---------- -------------HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement WAHHTVTTYKAAAWWWDAAWHWAWDAAWAAMWWWHBWA TWAAWTTVTGAAAAAHWW WAHHTVTTYKAAAWWWDAAWHWATDAAWWWMWKAWDWAHWW Direction: Forward Position #: 24 Overlap #: 15 Alignment: WAHHTVTTYKAAAWWWDAAWHWAWDAAWAAMWWWHBWA--- -----------------------TWAAWTTVTGAAAAAHWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Original Motif WAHHTVTTYKAAAWWWDAAWHWATDAAWWWMWKAWDWAHWW AATTYDGAARTAWW WAHHTVTTYKAAAWWWDAAWHWATAAWTHWGAAAWAWAHWW Direction: Forward Position #: 25 Overlap #: 14 Alignment: WAHHTVTTYKAAAWWWDAAWHWATDAAWWWMWKAWDWAHWW ------------------------AATTYDGAARTAWW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Reverse Complement WAHHTVTTYKAAAWWWDAAWHWATAAWTHWGAAAWAWAHWW TGATTTTAWKATTT WAHHTVTTYKAAAWWTGAWTTTAWDATTTWGAAAWAWAHWW Direction: Forward Position #: 16 Overlap #: 14 Alignment: WAHHTVTTYKAAAWWWDAAWHWATAAWTHWGAAAWAWAHWW ---------------TGATTTTAWKATTT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Reverse Complement Reverse Complement WWHTWTWTTTCWAAATDWTAAAWTCAWWTTTYMAABAHHTW WHTATTATTTDH WWHTWTWTTTCWAAATDWTAAAWTCAWHTWTTAWWTAHHTW Direction: Forward Position #: 27 Overlap #: 12 Alignment: WWHTWTWTTTCWAAATDWTAAAWTCAWWTTTYMAABAHHTW --------------------------WHTATTATTTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Reverse Complement WWHTWTWTTTCWAAATDWTAAAWTCAWHTWTTAWWTAHHTW DDTATTATTTDH WWHTWTWTTTCWAAATDWTAAAWTCAWHTATTATTTDHHTW Direction: Forward Position #: 27 Overlap #: 12 Alignment: WWHTWTWTTTCWAAATDWTAAAWTCAWHTWTTAWWTAHHTW --------------------------DDTATTATTTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Original Motif WAHHDAAATAATAHWTGAWTTTAWDATTTWGAAAWAWAHWW AWTAAATAYAATTT WAHHDAAATAATAAWTRAATWTAATWTTTWGAAAWAWAHWW Direction: Forward Position #: 14 Overlap #: 14 Alignment: WAHHDAAATAATAHWTGAWTTTAWDATTTWGAAAWAWAHWW -------------AWTAAATAYAATTT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 20 Combined Motif Reverse Complement Original Motif WWHTWTWTTTCWAAAWATTAWATTKAWTTATTATTTDHHTW TTMAAAGATTT WWHTWTWTTTMAAARAWTTAWATTKAWTTATTATTTDHHTW Direction: Forward Position #: 9 Overlap #: 11 Alignment: WWHTWTWTTTCWAAAWATTAWATTKAWTTATTATTTDHHTW --------TTMAAAGATTT---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 20 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 20 Motif 19 Original Motif Original Motif TTMAAAGATTT TTCWTAGATTAWA TTCAWAGATTWWA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTMAAAGATTT-- TTCWTAGATTAWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif TTCAWAGATTWWA AAATRWTAAAATCA AAWTVWTARAWTHAA Direction: Forward Position #: 3 Overlap #: 12 Alignment: --TTCAWAGATTWWA AAATRWTAAAATCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Reverse Complement AAWTVWTARAWTHAA AAATTKTATTTAWT AAATTKTATTWAWTVWTARAWTHAA Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------AAWTVWTARAWTHAA AAATTKTATTTAWT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Reverse Complement AAATTKTATTWAWTVWTARAWTHAA TCAAAATKAWTTGT AAATYDWAWTDAWTHRTARAWTHAA Direction: Forward Position #: 4 Overlap #: 14 Alignment: AAATTKTATTWAWTVWTARAWTHAA ---TCAAAATKAWTTGT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement TTDAWTKTAMHAWTDAWTWDKATTT TTTDAWATATHATT TTDATTTTAHAWWTDAWTWDKATTT Direction: Forward Position #: 5 Overlap #: 14 Alignment: TTDAWTKTAMHAWTDAWTWDKATTT ----TTTDAWATATHATT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif AAATYDWAWTDAWWTHTAAAATHAA ATKAAWTTTTRMAABAHHTW AAATYDWAWTDAWWTDWAAWWTHAAAABAHHTW Direction: Forward Position #: 14 Overlap #: 12 Alignment: AAATYDWAWTDAWWTHTAAAATHAA-------- -------------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Original Motif AAATYDWAWTDAWWTDWAAWWTHAAAABAHHTW AAAAWTTRCWT AAATYDWAWTDAWWTDWAAWWWAAAAWTAMHTW Direction: Forward Position #: 22 Overlap #: 11 Alignment: AAATYDWAWTDAWWTDWAAWWTHAAAABAHHTW ---------------------AAAAWTTRCWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement AAATYDWAWTDAWWTDWAAWWWAAAAWTAMHTW TWAAWTTVTGAAAAAHWW AAATYDWAWTDAWWTDWAAWWAAWWWHTRHWWWAHWW Direction: Forward Position #: 20 Overlap #: 14 Alignment: AAATYDWAWTDAWWTDWAAWWWAAAAWTAMHTW---- -------------------TWAAWTTVTGAAAAAHWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Reverse Complement AAATYDWAWTDAWWTDWAAWWAAWWWHTRHWWWAHWW WHTATTATTTDH AAATYDWAWTDAWWTDWAAWWAAWHTATDAWTWAHWW Direction: Forward Position #: 24 Overlap #: 12 Alignment: AAATYDWAWTDAWWTDWAAWWAAWWWHTRHWWWAHWW -----------------------WHTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Original Motif AAATYDWAWTDAWWTDWAAWWAAWHTATDAWTWAHWW ATMACAATAAAA ATMAMAWTAAAATDAWWTDWAAWWAAWHTATDAWTWAHWW Direction: Forward Position #: 4 Overlap #: 9 Alignment: ---AAATYDWAWTDAWWTDWAAWWAAWHTATDAWTWAHWW ATMACAATAAAA---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 21 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Motif 15 Reverse Complement Reverse Complement TTTTAT TTTTATTGTYAT TTTTATTGTYAT Direction: Backward Position #: 7 Overlap #: 6 Alignment: TTTTAT------ TTTTATTGTYAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Original Motif TTTTATTGTYAT ATTTWATGAAA WTTTAWTGWHAT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTTTATTGTYAT ATTTWATGAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Original Motif WTTTAWTGWHAT AWTAAATAYAATTT ATTWAATRHAATTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: WTTTAWTGWHAT-- AWTAAATAYAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Original Motif Reverse Complement ATTWAATRHAATTT TGATTTTAWKATTT WKWTWWTAWDATTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: ATTWAATRHAATTT TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Reverse Complement Reverse Complement AAATDWTAWWAWYW AWTTATGAAA AAWTATKAAAAWYW Direction: Forward Position #: 1 Overlap #: 10 Alignment: AAATDWTAWWAWYW AWTTATGAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Reverse Complement Reverse Complement WKWTTTTYATAWTT TTATTTWT TTATTTTTATAWTT Direction: Forward Position #: 1 Overlap #: 8 Alignment: WKWTTTTYATAWTT TTATTTWT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 20 Reverse Complement Reverse Complement AAWTATAAAAATAA AAATCTTTYAA AAATMTWWHAATAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAWTATAAAAATAA AAATCTTTYAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Reverse Complement TTATTHWWARATTT TWTAATCTAWGAA TWTAWTCTAAGAWTT Direction: Forward Position #: 2 Overlap #: 12 Alignment: -TTATTHWWARATTT TWTAATCTAWGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Original Motif TWTAWTCTAAGAWTT HDAAATAATADD TWTAWWMTAAKAWTT Direction: Forward Position #: 3 Overlap #: 12 Alignment: TWTAWTCTAAGAWTT --HDAAATAATADD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement AAWTRTTAYWWTAWA TWSTTTWAWTTTWT WWHTWTTAWTTTAWA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAWTRTTAYWWTAWA TWSTTTWAWTTTWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 22 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx cccGCCCCGCCCCsb Original Motif Original Motif BBVGCCBVGGCCTV BCCGCCCCGCCCCBB BBSGCCCCGSCCYBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBVGCCBVGGCCTV- BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Original Motif BBSGCCCCGSCCYBB RGRGGAGRRGGHGGDG RGRGGAGRRGGHVVVGCCCCGSCCYBB Direction: Forward Position #: 13 Overlap #: 4 Alignment: ------------BBSGCCCCGSCCYBB RGRGGAGRRGGHGGDG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement BBMGGSCGGGGCVVVBCCKMCTCCKCM MSGKKRCGCWDCABTGBBCD BBMGGSCGGGGCVGBBVCKCHTCMKHVBBCD Direction: Forward Position #: 12 Overlap #: 16 Alignment: BBMGGSCGGGGCVVVBCCKMCTCCKCM---- -----------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif BBMGGSCGGGGCVGBBVCKCHTCMKHVBBCD CYYCBBCYYYTCCHCCTYYY BBMGGSCGGGGCVGBBVCBCHBCCBYBYCCBCCTYYY Direction: Forward Position #: 18 Overlap #: 14 Alignment: BBMGGSCGGGGCVGBBVCKCHTCMKHVBBCD------ -----------------CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Original Motif KKKAGGVGGMBKVGGVDGVGVVBCVGCCCCGSCCYBB HVGCCCCGCCCCBB KKKAGGVGGMBKVGGVDGVGVVBVGSCCCSSCCCBBB Direction: Forward Position #: 23 Overlap #: 14 Alignment: KKKAGGVGGMBKVGGVDGVGVVBCVGCCCCGSCCYBB ----------------------HVGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Original Motif KKKAGGVGGMBKVGGVDGVGVVBVGSCCCSSCCCBBB GGGGCCCAAGGGGG KKKAGGVGGGGSCVDAGGGGGVBVGSCCCSSCCCBBB Direction: Forward Position #: 8 Overlap #: 14 Alignment: KKKAGGVGGMBKVGGVDGVGVVBVGSCCCSSCCCBBB -------GGGGCCCAAGGGGG---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif KKKAGGVGGGGSCVDAGGGGGVBVGSCCCSSCCCBBB CSKCCCCGCCCCSY KKKAGGVGGGGSCVDAGGGGGVBCSBCCCCGCCCCBB Direction: Forward Position #: 24 Overlap #: 14 Alignment: KKKAGGVGGGGSCVDAGGGGGVBVGSCCCSSCCCBBB -----------------------CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement KKKAGGVGGGGSCVDAGGGGGVBCSBCCCCGCCCCBB GCVCCGCCMCCYCC KKKAGGVGGGGSCVDAGGGGGVBSCVCCSCSCCCYCC Direction: Forward Position #: 24 Overlap #: 14 Alignment: KKKAGGVGGGGSCVDAGGGGGVBCSBCCCCGCCCCBB -----------------------GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Reverse Complement KKKAGGVGGGGSCVDAGGGGGVBSCVCCSCSCCCYCC GCVGCGGCBCCG KKKAGGVGGGGSCVDAGGGGGVGCCGCSGCBCCSYCC Direction: Forward Position #: 23 Overlap #: 12 Alignment: KKKAGGVGGGGSCVDAGGGGGVBSCVCCSCSCCCYCC ----------------------GCVGCGGCBCCG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA Combined Motif Original Motif Original Motif KKKAGGVGGGGSCVDAGGGGGVGCCGCSGCBCCSYCC CCGGAAGTGVV KKKAGGVGGGGSCVVMGGRRGHGVVGCSGCBCCSYCC Direction: Forward Position #: 15 Overlap #: 11 Alignment: KKKAGGVGGGGSCVDAGGGGGVGCCGCSGCBCCSYCC --------------CCGGAAGTGVV------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 23 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 TFF11 Reverse Complement Reverse Complement YCGCCCACGCH GCVCCGCCMCCYCC GCVCCGCCCMCKCM Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---YCGCCCACGCH GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Original Motif RGYGYGGGCGGVGC RGRGGAGRRGGHGGDG RGRGGAGRRGGHGGBGYGGGCGGVGC Direction: Forward Position #: 13 Overlap #: 4 Alignment: ------------RGYGYGGGCGGVGC RGRGGAGRRGGHGGDG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif GCVCCGCCCMCBCCBCCKMCTCCKCM CYYCBBCYYYTCCHCCTYYY GCVCCGCCCMCBCCHCCKVCTCCTCCHCCTYYY Direction: Forward Position #: 14 Overlap #: 13 Alignment: GCVCCGCCCMCBCCBCCKMCTCCKCM------- -------------CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif GCVCCGCCCMCBCCHCCKVCTCCTCCHCCTYYY BCCGCCCCGCCCCBB GCVCCGCCCMCBCCHCCKVCBCCKCCCCSCCCCBB Direction: Forward Position #: 21 Overlap #: 13 Alignment: GCVCCGCCCMCBCCHCCKVCTCCTCCHCCTYYY-- --------------------BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement GCVCCGCCCMCBCCHCCKVCBCCKCCCCSCCCCBB VAGGCCBBGGCVBB GCVCCGCCCMCBCCHCCKVCBCMGSCCCSBSCCBB Direction: Forward Position #: 22 Overlap #: 14 Alignment: GCVCCGCCCMCBCCHCCKVCBCCKCCCCSCCCCBB ---------------------VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement GCVCCGCCCMCBCCHCCKVCBCMGSCCCSBSCCBB MSGKKRCGCWDCABTGBBCD GCVCCGCCCMCBCCHCCKVCHSRGBMCBCDBCMBBGBBCD Direction: Forward Position #: 21 Overlap #: 15 Alignment: GCVCCGCCCMCBCCHCCKVCBCMGSCCCSBSCCBB----- --------------------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Reverse Complement HGVBCVBRGVDGBGRBCMSDGVYGGHGGBGYGGGCGGVGC MSGGGGCGGGGYSG HGVBCVBRGVDGBGRBCMSDGVYGGMGGGGGSGGSGBVGC Direction: Forward Position #: 26 Overlap #: 14 Alignment: HGVBCVBRGVDGBGRBCMSDGVYGGHGGBGYGGGCGGVGC -------------------------MSGGGGCGGGGYSG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Reverse Complement HGVBCVBRGVDGBGRBCMSDGVYGGMGGGGGSGGSGBVGC BBGGGGCGGGGCVD HGVBCVBRGVDGBGRBCMSDGVYGGVSGGGGCGGGGCVGC Direction: Forward Position #: 26 Overlap #: 14 Alignment: HGVBCVBRGVDGBGRBCMSDGVYGGMGGGGGSGGSGBVGC -------------------------BBGGGGCGGGGCVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 Combined Motif Reverse Complement Original Motif GCVGCCCCGCCCCSBCCKVCHSRGBMCBCDBCMBBGBBCD CGGCYBCGCG GCVGCCCCGCCCCSBCCKVCHSRGBCSGCBBCSCBGBBCD Direction: Forward Position #: 26 Overlap #: 10 Alignment: GCVGCCCCGCCCCSBCCKVCHSRGBMCBCDBCMBBGBBCD -------------------------CGGCYBCGCG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Reverse Complement Reverse Complement HGVBCBGSGBVGCSGBCMSDGVYGGVSGGGGCGGGGCVGC GGGGGYGGGG HGVBCBGSGBVGCSGBCMSDGVYGGVGGGGGCGGGGCVGC Direction: Forward Position #: 27 Overlap #: 10 Alignment: HGVBCBGSGBVGCSGBCMSDGVYGGVSGGGGCGGGGCVGC --------------------------GGGGGYGGGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 24 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Motif 7 Reverse Complement Reverse Complement GGGGGYGGGG MSGGGGCGGGGYSG MGGGGGCGGGGYSG Direction: Backward Position #: 4 Overlap #: 10 Alignment: -GGGGGYGGGG--- MSGGGGCGGGGYSG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Original Motif CSKCCCCGCCCCCY HVGCCCCGCCCCBB CSGCCCCGCCCCSB Direction: Forward Position #: 1 Overlap #: 14 Alignment: CSKCCCCGCCCCCY HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Reverse Complement VSGGGGCGGGGCSG BBGGGGCGGGGCGGB VBGGGGCGGGGCGGB Direction: Forward Position #: 1 Overlap #: 14 Alignment: VSGGGGCGGGGCSG- BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement BCCGCCCCGCCCCBV GCVCCGCCMCCYCC SCVSCSCCVCCCCCV Direction: Forward Position #: 1 Overlap #: 14 Alignment: BCCGCCCCGCCCCBV GCVCCGCCMCCYCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Reverse Complement VGGGGGVGGSGSVGS KKKAGGDGGAKKMGBBGKMG KKKAGGDGGAKKMGBBGGVGVGGSGSVGS Direction: Forward Position #: 15 Overlap #: 6 Alignment: --------------VGGGGGVGGSGSVGS KKKAGGDGGAKKMGBBGKMG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif KKKAGGDGGAKKMGBBGGVGVGGSGSVGS RGRGGAGRRGGHGGDG KKKAGGDGGAKKMGBBGGRGVRGGGGGVGGDG Direction: Forward Position #: 17 Overlap #: 13 Alignment: KKKAGGDGGAKKMGBBGGVGVGGSGSVGS--- ----------------RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif KKKAGGDGGAKKMGBBGGRGVRGGGGGVGGDG BBVGCCBVGGCCTV KKKAGGDGGAKKMGBBGGRGVVGGSSBVGGCSTV Direction: Forward Position #: 21 Overlap #: 12 Alignment: KKKAGGDGGAKKMGBBGGRGVRGGGGGVGGDG-- --------------------BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Original Motif KKKAGGDGGAKKMGBBGGRGVVGGSSBVGGCSTV CGGVGCCGCVGC KKKAGGDGGAKKMGBBGGRGVVGGVGCVGSVGYV Direction: Forward Position #: 22 Overlap #: 12 Alignment: KKKAGGDGGAKKMGBBGGRGVVGGSSBVGGCSTV ---------------------CGGVGCCGCVGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Reverse Complement VMCVSCVGCVCCVVCKCCBBCYYYTCCHCCTYYY CCCCCTTGGGCCCC VMCVSCVGCCCCCCYTVSSCCCCYTCCHCCTYYY Direction: Forward Position #: 10 Overlap #: 14 Alignment: VMCVSCVGCVCCVVCKCCBBCYYYTCCHCCTYYY ---------CCCCCTTGGGCCCC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Reverse Complement Original Motif KKKAGGDGGAKGGGGSSVAKGGGGGGCVGSVGYV DGGGYGKGGC KKKAGGDGGAKGGGGSSVAKGGGGGGYGGGGSYV Direction: Forward Position #: 23 Overlap #: 10 Alignment: KKKAGGDGGAKGGGGSSVAKGGGGGGCVGSVGYV ----------------------DGGGYGKGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 25 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFAP2A Zfx Reverse Complement Original Motif SCMVBBGGC BBVGCCBVGGCCTV BBVSCCBVGGSCTV Direction: Backward Position #: 3 Overlap #: 9 Alignment: ---SCMVBBGGC-- BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Reverse Complement BBVSCCBVGGSCTV CCCCCTTGGGCCCC CCCCCYHVGGCCYC Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBVSCCBVGGSCTV CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement CCCCCYHVGGCCYC GCVCCGCCMCCYCC SCCCCBCCVSCCYC Direction: Forward Position #: 1 Overlap #: 14 Alignment: CCCCCYHVGGCCYC GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement SCCCCBCCVSCCYC GCCACGTGSD SCCMCGTGSVCCYC Direction: Forward Position #: 1 Overlap #: 10 Alignment: SCCCCBCCVSCCYC GCCACGTGSD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Reverse Complement Reverse Complement GKGGVSCACGRGGS CGCGBMGCCG SGSGBVGMCGRGGS Direction: Forward Position #: 1 Overlap #: 10 Alignment: GKGGVSCACGRGGS CGCGBMGCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement SGSGBVGMCGRGGS MSGKKRCGCWDCABTGBBCD MSGKKRCGCWDCABBGBGCVGMCGRGGS Direction: Forward Position #: 15 Overlap #: 6 Alignment: --------------SGSGBVGMCGRGGS MSGKKRCGCWDCABTGBBCD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Reverse Complement Original Motif SCCMCGRCVGCBCBBTGDWGCGKRYCSR VGCACGTGGH SCCMCGRCVGCACGYKGHWGCGKRYCSR Direction: Forward Position #: 9 Overlap #: 10 Alignment: SCCMCGRCVGCBCBBTGDWGCGKRYCSR --------VGCACGTGGH---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement MSGKKRCGCWHCYMCGTGCVGMCGRGGS KKKAGGDGGAKKMGBBGKMG MSGKKRCGCWHCYMCGKGVGGVSGRGGHGBBGKMG Direction: Forward Position #: 16 Overlap #: 13 Alignment: MSGKKRCGCWHCYMCGTGCVGMCGRGGS------- ---------------KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Original Motif MSGKKRCGCWHCYMCGKGVGGVSGRGGHGBBGKMG CGGVGCCGCVGC MSGKKRCGCWHCYMCGKGVGGVBGGVGCSGCGGCG Direction: Forward Position #: 23 Overlap #: 12 Alignment: MSGKKRCGCWHCYMCGKGVGGVSGRGGHGBBGKMG ----------------------CGGVGCCGCVGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif MSGKKRCGCWHCYMCGKGVGGVBGGVGCSGCGGCG RGRGGAGRRGGHGGDG MSGKKRCGCWHCYMCGKGVGGVVGGRGVRGSVGVGG Direction: Forward Position #: 21 Overlap #: 15 Alignment: MSGKKRCGCWHCYMCGKGVGGVBGGVGCSGCGGCG- --------------------RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 26 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF GABPA Reverse Complement Original Motif GCGGACGTTV CCGGAAGTGVV SCGGAMGTDVV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCGGACGTTV- CCGGAAGTGVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Reverse Complement Original Motif VVDACYTCCGS BCACCTGCABC BVAMCTKCMGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: VVDACYTCCGS BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Original Motif Original Motif BVAMCTKCMGS DHACATTCTGH DHACMTTCTGH Direction: Forward Position #: 1 Overlap #: 11 Alignment: BVAMCTKCMGS DHACATTCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Reverse Complement DHACMTTCTGH SGGTCACGTGACCS SGGTCACGTVACCTTCTGH Direction: Forward Position #: 9 Overlap #: 6 Alignment: --------DHACMTTCTGH SGGTCACGTGACCS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Original Motif SGGTCACGTVACCTTCTGH GGMGGRGGCGGVGC GGVGGDSRCGKVRCCTTCTGH Direction: Forward Position #: 3 Overlap #: 12 Alignment: --SGGTCACGTVACCTTCTGH GGMGGRGGCGGVGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement GGVGGDSRCGKVRCCTTCTGH KKKAGGDGGAKKMGBBGKMG GGVGGDVGSGKGRBBHKCHGBMG Direction: Forward Position #: 4 Overlap #: 18 Alignment: GGVGGDSRCGKVRCCTTCTGH-- ---KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement GGVGGDVGSGKGRBBHKCHGBMG BBGGGGCGGGGCGGB GGVGBBGGGGSGGGGCGSBGBMG Direction: Forward Position #: 5 Overlap #: 15 Alignment: GGVGGDVGSGKGRBBHKCHGBMG ----BBGGGGCGGGGCGGB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif GGVGBBGGGGSGGGGCGSBGBMG DGVBCABTGDWGCGKRRCSR GGVGBBGGGGSGGVGCDBBGDHGCGKRRCSR Direction: Forward Position #: 12 Overlap #: 12 Alignment: GGVGBBGGGGSGGGGCGSBGBMG-------- -----------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Original Motif MSGKKRCGCHDCVBHGCVCCSCCCCBBCVCC HVGCCCCGCCCCBB MSGKKRCGCHDCVBHGCVCVGCCCCGCCCCCB Direction: Forward Position #: 19 Overlap #: 13 Alignment: MSGKKRCGCHDCVBHGCVCCSCCCCBBCVCC- ------------------HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Original Motif Reverse Complement MSGKKRCGCHDCVBHGCVCVGCCCCGCCCCCB DHTATTTACBD DHTATTTACGDKRCGCHDCVBHGCVCVGCCCCGCCCCCB Direction: Forward Position #: 8 Overlap #: 4 Alignment: -------MSGKKRCGCHDCVBHGCVCVGCCCCGCCCCCB DHTATTTACBD---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 27 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Motif 7 Reverse Complement Original Motif GCCYCMCCCD CSKCCCCGCCCCSY CSGCCCCVCCCHSY Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GCCYCMCCCD-- CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Original Motif CSGCCCCVCCCHSY HVGCCCCGCCCCBB CSGCCCCGCCCCSB Direction: Forward Position #: 1 Overlap #: 14 Alignment: CSGCCCCVCCCHSY HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Reverse Complement VSGGGGCGGGGCSG BBGGGGCGGGGCGGB BBGGGGCGGGGCSGGGGCGGGGCSG Direction: Forward Position #: 12 Overlap #: 4 Alignment: -----------VSGGGGCGGGGCSG BBGGGGCGGGGCGGB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif BBGGGGCGGGGCSGGGGCGGGGCSG GGMGGRGGCGGVGC BBGGGGCGGGGCSGGGGSGGGGCGGVGC Direction: Forward Position #: 15 Overlap #: 11 Alignment: BBGGGGCGGGGCSGGGGCGGGGCSG--- --------------GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement BBGGGGCGGGGCSGGGGSGGGGCGGVGC KKKAGGDGGAKKMGBBGKMG BBGGGGCGGGGCSGGGGBRGGGSGRDGMGBBGKMG Direction: Forward Position #: 16 Overlap #: 13 Alignment: BBGGGGCGGGGCSGGGGSGGGGCGGVGC------- ---------------KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Reverse Complement CYYCBBCRCHMCSCCCMBCCCCSGCCCCGCCCCBB CHCCBCCKMCTCCKCM CYYCBBCRCHMCSCCCMBCCCCHVCCCCGCCYCCBCM Direction: Forward Position #: 22 Overlap #: 14 Alignment: CYYCBBCRCHMCSCCCMBCCCCSGCCCCGCCCCBB-- ---------------------CHCCBCCKMCTCCKCM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif RGVGGKGGCGGGGVDGGGGBRGGGSGRDGMGBBGKMG BBVGCCBVGGCCTV RGVGGKGGCGGGGVDGGGGBRGGGSGVGSCGVGGCCKV Direction: Forward Position #: 25 Overlap #: 13 Alignment: RGVGGKGGCGGGGVDGGGGBRGGGSGRDGMGBBGKMG- ------------------------BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Reverse Complement Original Motif VYGGCCVCGSCVCSCCCMBCCCCHVCCCCGCCYCCBCM CCCCKCCCCC VYGGCCVCGSCVCSCCCMBCCCCHVCCCCKCCYCCBCM Direction: Forward Position #: 26 Overlap #: 10 Alignment: VYGGCCVCGSCVCSCCCMBCCCCHVCCCCGCCYCCBCM -------------------------CCCCKCCCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Original Motif Reverse Complement VYGGCCVCGSCVCSCCCMBCCCCHVCCCCKCCYCCBCM DCCACGTGCV VYGGCCVCGSCVCBCCMCGTSCVHVCCCCKCCYCCBCM Direction: Forward Position #: 14 Overlap #: 10 Alignment: VYGGCCVCGSCVCSCCCMBCCCCHVCCCCKCCYCCBCM -------------DCCACGTGCV--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif RGVGGKGGYGGGGVDVGSACGYGGBGVGSCGVGGCCKV DGVBCABTGDWGCGKRRCSR RGVGGKGGYGGGGVDVGSACGYGGVBVDBYGVDGCVKRRCSR Direction: Forward Position #: 23 Overlap #: 16 Alignment: RGVGGKGGYGGGGVDVGSACGYGGBGVGSCGVGGCCKV---- ----------------------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 28 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- E2F1 PLAG1 Reverse Complement Original Motif GCGCSAAA GGGGCCCAAGGGGG GGSGCCAAAGGGGG Direction: Forward Position #: 2 Overlap #: 8 Alignment: -GCGCSAAA----- GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kCAGCCAATmr Original Motif Reverse Complement GGSGCCAAAGGGGG MBATTGGCTGH MBATTGGCKSCAAAGGGGG Direction: Forward Position #: 6 Overlap #: 6 Alignment: -----GGSGCCAAAGGGGG MBATTGGCTGH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement CCCCCTTTGSRGCCAATBR GCVCCGCCMCCYCC SCCCCKYYVCVSCCAATBR Direction: Forward Position #: 1 Overlap #: 14 Alignment: CCCCCTTTGSRGCCAATBR GCVCCGCCMCCYCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Reverse Complement SCCCCKYYVCVSCCAATBR YCGCCCACGCH CCVCCBHCGCVSCCAATBR Direction: Forward Position #: 1 Overlap #: 11 Alignment: SCCCCKYYVCVSCCAATBR YCGCCCACGCH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Reverse Complement CCVCCBHCGCVSCCAATBR GCVGCGGCBCCG CCVSCVVCGSCBCCAATBR Direction: Forward Position #: 4 Overlap #: 12 Alignment: CCVCCBHCGCVSCCAATBR ---GCVGCGGCBCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Reverse Complement MBATTGGBGSCGVVGSVGG TTTTATTGTYAT TTTTATTGTYATTGGBGSCGVVGSVGG Direction: Forward Position #: 9 Overlap #: 4 Alignment: --------MBATTGGBGSCGVVGSVGG TTTTATTGTYAT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Original Motif TTTTATTGTYATTGGBGSCGVVGSVGG ATTTWATGAAA WTTTAWTGAAATTGGBGSCGVVGSVGG Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTTTATTGTYATTGGBGSCGVVGSVGG ATTTWATGAAA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Original Motif WTTTAWTGAAATTGGBGSCGVVGSVGG HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAAHAAAAAMAAAMWWWTTTAWTGAAATTGGBGSCGVVGSVGG Direction: Forward Position #: 21 Overlap #: 5 Alignment: --------------------WTTTAWTGAAATTGGBGSCGVVGSVGG HDWVAAAHAAAAAMAAAMWWWHBWA---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement HDWVAAAHAAAAAMAAAMWWWTTTAWTGAAATTGGBGSCGVVGSVGG BBGGGGCGGGGCGGB HDWVAAAHAAAAAMAAAMWWWTTTAWTGAHAKGGGCGGSGCGGSVGG Direction: Forward Position #: 30 Overlap #: 15 Alignment: HDWVAAAHAAAAAMAAAMWWWTTTAWTGAAATTGGBGSCGVVGSVGG -----------------------------BBGGGGCGGGGCGGB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 Combined Motif Reverse Complement Original Motif CCVSCCGCSCCGCCCRTHTCAWTAAAWWWYTTTYTTTTTHTTTVWBH CGGCYBCGCG CCVSCCGCGSCKCCSVBHTCAWTAAAWWWYTTTYTTTTTHTTTVWBH Direction: Forward Position #: 8 Overlap #: 10 Alignment: CCVSCCGCSCCGCCCRTHTCAWTAAAWWWYTTTYTTTTTHTTTVWBH -------CGGCYBCGCG------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 29 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIF1AARNT Mycn Original Motif Reverse Complement VBACGTGV GCCACGTGSD GSCACGTGSD Direction: Forward Position #: 2 Overlap #: 8 Alignment: -VBACGTGV- GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement GSCACGTGSD DCCACGTGCV GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GSCACGTGSD DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Reverse Complement Reverse Complement VSCACGTGGC GBTGCAGGTGB GBTGCASGTGBC Direction: Forward Position #: 3 Overlap #: 9 Alignment: --VSCACGTGGC GBTGCAGGTGB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Reverse Complement GBTGCASGTGBC SGGTCACGTGACCS SSKKCACGTGDCCS Direction: Forward Position #: 1 Overlap #: 12 Alignment: GBTGCASGTGBC-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Reverse Complement Reverse Complement SGGDCACGTGRYSS GCGGACGTTV GCGGACGKTCACGTGRYSS Direction: Forward Position #: 6 Overlap #: 5 Alignment: -----SGGDCACGTGRYSS GCGGACGTTV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Reverse Complement SSKKCACGTGARCGTCCGC MSGKKRCGCWDCABTGBBCD MSGKKRCGCWDCABTGBBHCACGTGARCGTCCGC Direction: Forward Position #: 16 Overlap #: 5 Alignment: ---------------SSKKCACGTGARCGTCCGC MSGKKRCGCWDCABTGBBCD-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh Combined Motif Reverse Complement Original Motif GCGGACGKTCACGTGDBBCABTGDWGCGKRYCSR DHACATTCTGH GCGGACGKDHACRTTCTKHABTGDWGCGKRYCSR Direction: Forward Position #: 9 Overlap #: 11 Alignment: GCGGACGKTCACGTGDBBCABTGDWGCGKRYCSR --------DHACATTCTGH--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif GABPA Original Motif Original Motif GCGGACGKDHACRTTCTKHABTGDWGCGKRYCSR CCGGAAGTGVV SCGGAMGTDVACRTTCTKHABTGDWGCGKRYCSR Direction: Forward Position #: 1 Overlap #: 11 Alignment: GCGGACGKDHACRTTCTKHABTGDWGCGKRYCSR CCGGAAGTGVV----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Original Motif Original Motif SCGGAMGTDVACRTTCTKHABTGDWGCGKRYCSR SCGCGCGG SCGSRCGKDVACRTTCTKHABTGDWGCGKRYCSR Direction: Forward Position #: 1 Overlap #: 8 Alignment: SCGGAMGTDVACRTTCTKHABTGDWGCGKRYCSR SCGCGCGG-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif SCGSRCGKDVACRTTCTKHABTGDWGCGKRYCSR GGMGGRGGCGGVGC SCGSRCGGGVVSRKKCKGVRSTGDWGCGKRYCSR Direction: Forward Position #: 8 Overlap #: 14 Alignment: SCGSRCGKDVACRTTCTKHABTGDWGCGKRYCSR -------GGMGGRGGCGGVGC------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 30 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 TFM12 Reverse Complement Original Motif CCCCCTTGGGCCCC CYYCBBCYYYTCCHCCTYYY CCCCCCYTBSKCCCCCTYYY Direction: Backward Position #: 6 Overlap #: 14 Alignment: -CCCCCTTGGGCCCC----- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement CCCCCCYTBSKCCCCCTYYY CHCCBCCKMCTCCKCM CCCCCCYBCKVCYCCYHCYY Direction: Forward Position #: 3 Overlap #: 16 Alignment: CCCCCCYTBSKCCCCCTYYY --CHCCBCCKMCTCCKCM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement KKGDMGGMGVYGBKGGGGGG VAGGCCBBGGCVBB KKGVAGGCSBYGGBVGBGGG Direction: Forward Position #: 4 Overlap #: 14 Alignment: KKGDMGGMGVYGBKGGGGGG ---VAGGCCBBGGCVBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Original Motif CCCBCVBCCKBSGCCTVCYY BCCGCCCCGCCCCBB CCCBCCGCCCCGSCCYBHYY Direction: Forward Position #: 4 Overlap #: 15 Alignment: CCCBCVBCCKBSGCCTVCYY ---BCCGCCCCGCCCCBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif KKDBKGGSCGGGGCGGBGGG DGVBCABTGDWGCGKRRCSR KDGVKSRSYGDDGCGKRGVGR Direction: Forward Position #: 2 Overlap #: 19 Alignment: KKDBKGGSCGGGGCGGBGGG- -DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif MCVCMYCGCHHCKSMSYVCHY CSKCCCCGCCCCSY MCVCVBCSCCGCCCCSYVCHY Direction: Forward Position #: 4 Overlap #: 14 Alignment: MCVCMYCGCHHCKSMSYVCHY ---CSKCCCCGCCCCSY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Original Motif KDGVKSGGGGCGGSGBVGVGR GGMGGRGGCGGVGC KDGGGVGGGGSSGGGGSGVGR Direction: Forward Position #: 4 Overlap #: 14 Alignment: KDGVKSGGGGCGGSGBVGVGR ---GGMGGRGGCGGVGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Original Motif MCVCSCCCCSSCCCCVCCCHY HVGCCCCGCCCCBB MCVCVSCCCCGCCCCVBCCHY Direction: Forward Position #: 4 Overlap #: 14 Alignment: MCVCSCCCCSSCCCCVCCCHY ---HVGCCCCGCCCCBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Reverse Complement MCVCVSCCCCGCCCCVBCCHY GCVGCGGCBCCG MCVCGSCSCSGCCCCVBCCHY Direction: Forward Position #: 5 Overlap #: 12 Alignment: MCVCVSCCCCGCCCCVBCCHY ----GCVGCGGCBCCG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Original Motif Original Motif MCVCGSCSCSGCCCCVBCCHY CCCCKCCCCC MCVCGCCCCBSCCCCVBCCHY Direction: Forward Position #: 6 Overlap #: 10 Alignment: MCVCGSCSCSGCCCCVBCCHY -----CCCCKCCCCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 31 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 TFM12 Original Motif Reverse Complement DGVBCABTGDWGCGKRRCSR KKKAGGDGGAKKMGBBGKMG DGBDBVBKGADGMGKVRSVG Direction: Forward Position #: 1 Overlap #: 20 Alignment: DGVBCABTGDWGCGKRRCSR KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Reverse Complement CVSMVRCRCDTCRBVBDBCH TWVHWWWYTTTYTTTTTHTTTVWBH CVSMVRCRCDDCVDHHBHYTYTTTTTHTTTVWBH Direction: Forward Position #: 10 Overlap #: 11 Alignment: CVSMVRCRCDTCRBVBDBCH-------------- ---------TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif CVSMVRCRCDDCVDHHBHYTYTTTTTHTTTVWBH WWHTTTTTCABAAWTTWA CVSMVRCRCDDCVDHHBHYTHTHTTTHTYWBWAHTTWA Direction: Forward Position #: 21 Overlap #: 14 Alignment: CVSMVRCRCDDCVDHHBHYTYTTTTTHTTTVWBH---- --------------------WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif TWAAHTWBWMAHAAAHAHAMHVHHDBGDDGMGKVRSVG RGRGGAGRRGGHGGDG TWAAHTWBWMAHAAAHAHAMHVHHDDGARGMGDRGSVGGDG Direction: Forward Position #: 26 Overlap #: 13 Alignment: TWAAHTWBWMAHAAAHAHAMHVHHDBGDDGMGKVRSVG--- -------------------------RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif CHCCVSCKHCYCMTCHDHHBHYTHTHTTTHTYWBWAHTTWA WTKTTTTTHWTTTTTTBT CHCCVSCKHCYCMTCHDHHBHYTHTWTTTTTTTHWWTTTTWBT Direction: Forward Position #: 26 Overlap #: 16 Alignment: CHCCVSCKHCYCMTCHDHHBHYTHTHTTTHTYWBWAHTTWA-- -------------------------WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Reverse Complement ABWAAAAWWDAAAAAAAWAHAMHVHHDDGARGMGDRGSVGGDG BBGGGGCGGGGCGGB ABWAAAAWWDAAAAAAAWAHAMHVBGGGGMGGRGBRGSVGGDG Direction: Forward Position #: 24 Overlap #: 15 Alignment: ABWAAAAWWDAAAAAAAWAHAMHVHHDDGARGMGDRGSVGGDG -----------------------BBGGGGCGGGGCGGB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Reverse Complement CHCCVSCMBCMCCRCCCCBBHYTHTWTTTTTTTHWWTTTTWBT WAHHTVTTYKAAAAWTTRAT CHCCVSCMBCMCCRCCCCBBHYTHTWTWTTTHTTTKWWWWWHTRAT Direction: Forward Position #: 27 Overlap #: 17 Alignment: CHCCVSCMBCMCCRCCCCBBHYTHTWTTTTTTTHWWTTTTWBT--- --------------------------WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Reverse Complement ATKAHWWWWWRAAAHAAAWAWAHAMHVBGGGGMGGRGBRGSVGGDG BBGGGGCGGGGCVD ATKAHWWWWWRAAAHAAAWAWAHAMHVBGGGGMGGGGGGSGGGGBGD Direction: Forward Position #: 34 Overlap #: 13 Alignment: ATKAHWWWWWRAAAHAAAWAWAHAMHVBGGGGMGGRGBRGSVGGDG- ---------------------------------BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Reverse Complement ATKAHWWWWWRAAAHAAAWAWAHAMHVBGGGGMGGGGGGSGGGGBGD MSGGGGCGGGGYSG ATKAHWWWWWRAAAHAAAWAWAHAMHVBGGGGMSGGGGSGGGGBSGD Direction: Forward Position #: 33 Overlap #: 14 Alignment: ATKAHWWWWWRAAAHAAAWAWAHAMHVBGGGGMGGGGGGSGGGGBGD --------------------------------MSGGGGCGGGGYSG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Original Motif Original Motif ATKAHWWWWWRAAAHAAAWAWAHAMHVBGGGGMSGGGGSGGGGBSGD RGRAGARRGARRAR ATKAHWWWWWRAAAHAAAWAWAHAMHVBGGGRVVRGRGVGRGGVRGD Direction: Forward Position #: 32 Overlap #: 14 Alignment: ATKAHWWWWWRAAAHAAAWAWAHAMHVBGGGGMSGGGGSGGGGBSGD -------------------------------RGRAGARRGARRAR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 32 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ArntAhr Egr1 Reverse Complement Reverse Complement CACGCM YCGCCCACGCH YCGCCCACGCM Direction: Backward Position #: 1 Overlap #: 6 Alignment: -----CACGCM YCGCCCACGCH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HIF1AARNT Reverse Complement Original Motif YGCGTGGGCGK VBACGTGV VBRCGTGGGCGK Direction: Forward Position #: 2 Overlap #: 7 Alignment: -YGCGTGGGCGK VBACGTGV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement VBRCGTGGGCGK GCCACGTGSD GSCACGTGSGCGK Direction: Forward Position #: 2 Overlap #: 9 Alignment: -VBRCGTGGGCGK GCCACGTGSD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Reverse Complement GSCACGTGSGCGK BBGGGGCGGGGCVD BBGGSGCGKGGSVGK Direction: Forward Position #: 3 Overlap #: 12 Alignment: --GSCACGTGSGCGK BBGGGGCGGGGCVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Original Motif BBGGSGCGKGGSVGK VGCACGTGGH VGCACGBGGCGKGGSVGK Direction: Forward Position #: 4 Overlap #: 7 Alignment: ---BBGGSGCGKGGSVGK VGCACGTGGH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Reverse Complement Reverse Complement YCVSCCYCGCCVCGTGCV GCCCCGCC GCCCCSCCCGCCVCGTGCV Direction: Forward Position #: 2 Overlap #: 7 Alignment: -YCVSCCYCGCCVCGTGCV GCCCCGCC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Reverse Complement Reverse Complement VGCACGBGGCGGGSGGGGC SGGTCACGTGACCS SGSBCACGTGRCSGGSGGGGC Direction: Forward Position #: 3 Overlap #: 12 Alignment: --VGCACGBGGCGGGSGGGGC SGGTCACGTGACCS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Original Motif GCCCCSCCSGKCACGTGVSCS BCCGCCCCGCCCCBB GCCCCGCCCSGCMCSTGVSCS Direction: Forward Position #: 3 Overlap #: 15 Alignment: GCCCCSCCSGKCACGTGVSCS --BCCGCCCCGCCCCBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif GCCCCGCCCSGCMCSTGVSCS CSKCCCCGCCCCSY GCCCCGCCCCGCCCCBBVSCS Direction: Forward Position #: 4 Overlap #: 14 Alignment: GCCCCGCCCSGCMCSTGVSCS ---CSKCCCCGCCCCSY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 Combined Motif Original Motif Reverse Complement GCCCCGCCCCGCCCCBBVSCS CCGCGCGS GCCCCGCCSCGCSCCBBVSCS Direction: Forward Position #: 7 Overlap #: 8 Alignment: GCCCCGCCCCGCCCCBBVSCS ------CCGCGCGS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 33 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Myc Reverse Complement Reverse Complement GCCACGTGSD DCCACGTGCV GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSD DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Original Motif GCCACGTGSV SGGTCACGTGACCS SGGYCACGTGMVCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GCCACGTGSV-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif GABPA Reverse Complement Original Motif SGVYCACGTGMCCS CCGGAAGTGVV CCGGAAGBGBCACGTGMCCS Direction: Forward Position #: 7 Overlap #: 5 Alignment: ------SGVYCACGTGMCCS CCGGAAGTGVV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Reverse Complement Reverse Complement SGGYCACGTGBCBCTTCCGG GCCYCMCCCD GSSYCACSYDBCBCTTCCGG Direction: Forward Position #: 1 Overlap #: 10 Alignment: SGGYCACGTGBCBCTTCCGG GCCYCMCCCD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Original Motif CCGGAAGBGBHKSGTGMSSC GGMGGRGGCGGVGC CCGGARGVGGCGGGKSMSSC Direction: Forward Position #: 3 Overlap #: 14 Alignment: CCGGAAGBGBHKSGTGMSSC --GGMGGRGGCGGVGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif GSSYSYCCCGCCVCKTCCGG BBVGCCBVGGCCTV GSSBSBCCYVSSCCTBCCGG Direction: Forward Position #: 3 Overlap #: 14 Alignment: GSSYSYCCCGCCVCKTCCGG --BBVGCCBVGGCCTV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Reverse Complement CCGGVAGGSSVKGGBSBSSC CCCCCTTGGGCCCC CCCCSKWRGGCCCCGGBSBSSC Direction: Forward Position #: 3 Overlap #: 12 Alignment: --CCGGVAGGSSVKGGBSBSSC CCCCCTTGGGCCCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Reverse Complement CCCCSKWRGGCCCCGGBSBSSC BBGGGGCGGGGCVD CCCCBBDGGGCSSSGSBVBSSC Direction: Forward Position #: 5 Overlap #: 14 Alignment: CCCCSKWRGGCCCCGGBSBSSC ----BBGGGGCGGGGCVD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif GSSBVBSCSSSGCCCHBBGGGG CSKCCCCGCCCCSY GSSBCSGCCCCGCCCCBBGGGG Direction: Forward Position #: 5 Overlap #: 14 Alignment: GSSBVBSCSSSGCCCHBBGGGG ----CSKCCCCGCCCCSY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif GSSBCSGCCCCGCCCCBBGGGG BCCGCCCCGCCCCBB GSSBCCGCCCCGCCCCBBGGGG Direction: Forward Position #: 4 Overlap #: 15 Alignment: GSSBCSGCCCCGCCCCBBGGGG ---BCCGCCCCGCCCCBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 34 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Mycn Reverse Complement Reverse Complement DCCACGTGCV GCCACGTGSD GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCACGTGCV GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Original Motif GCCACGTGSV SGGTCACGTGACCS SGGYCACGTGMVCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GCCACGTGSV-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif GABPA Reverse Complement Original Motif SGVYCACGTGMCCS CCGGAAGTGVV CCGGAAGBGBCACGTGMCCS Direction: Forward Position #: 7 Overlap #: 5 Alignment: ------SGVYCACGTGMCCS CCGGAAGTGVV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement SGGYCACGTGBCBCTTCCGG GCVCCGCCMCCYCC SGGBCACSKSCMCCTYCCGG Direction: Forward Position #: 4 Overlap #: 14 Alignment: SGGYCACGTGBCBCTTCCGG ---GCVCCGCCMCCYCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Reverse Complement SGGBCACSKSCMCCTYCCGG GCCYCMCCCD GSSYCMCCCVCMCCTYCCGG Direction: Forward Position #: 1 Overlap #: 10 Alignment: SGGBCACSKSCMCCTYCCGG GCCYCMCCCD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif CCGGMAGGRGVGGGYGKSSC BBVGCCBVGGCCTV CCGGVVGSBBVGGSCKBSSC Direction: Forward Position #: 4 Overlap #: 14 Alignment: CCGGMAGGRGVGGGYGKSSC ---BBVGCCBVGGCCTV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Reverse Complement CCGGVVGSBBVGGSCKBSSC BBGGGGCGGGGCVD CCGGVVGGGGCGGGSBVSSC Direction: Forward Position #: 5 Overlap #: 14 Alignment: CCGGVVGSBBVGGSCKBSSC ----BBGGGGCGGGGCVD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Original Motif CCGGVVGGGGCGGGSBVSSC GGGGCCCAAGGGGG CCGGGGSSVDMGGGGGVSSC Direction: Forward Position #: 3 Overlap #: 14 Alignment: CCGGVVGGGGCGGGSBVSSC --GGGGCCCAAGGGGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif GSSVCCCCCRHVSSCCCCGG CSKCCCCGCCCCSY GSSBCBCCCCVCCCCCYCGG Direction: Forward Position #: 4 Overlap #: 14 Alignment: GSSVCCCCCRHVSSCCCCGG ---CSKCCCCGCCCCSY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif GSSBCBCCCCVCCCCCYCGG BCCGCCCCGCCCCBB GSBCCGCCCCGCCCCSBCGG Direction: Forward Position #: 3 Overlap #: 15 Alignment: GSSBCBCCCCVCCCCCYCGG --BCCGCCCCGCCCCBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 35 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA TFM12 Reverse Complement Original Motif VVCACTTCCGG CYYCBBCYYYTCCHCCTYYY CYYCVBCHCTTCCGSCTYYY Direction: Forward Position #: 5 Overlap #: 11 Alignment: ----VVCACTTCCGG----- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif KKKAGSCGGAAGHGBVGKMG RGRGGAGRRGGHGGDG KKGRRGVRGRAGBVGVGGMG Direction: Forward Position #: 3 Overlap #: 16 Alignment: KKKAGSCGGAAGHGBVGKMG --RGRGGAGRRGGHGGDG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif KKGRRGVRGRAGBVGVGGMG DGVBCABTGDWGCGKRRCSR KKGRRGVRGRRGBVVVBGHGGCGKRRCSR Direction: Forward Position #: 10 Overlap #: 11 Alignment: KKGRRGVRGRAGBVGVGGMG--------- ---------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif MSGKKRCGCCHCVVBVBCKKCMVCMMCYY BBVGCCBVGGCCTV MSGKKRCGCCHCVVBVBCBBCVSCBVGSCCTV Direction: Forward Position #: 19 Overlap #: 11 Alignment: MSGKKRCGCCHCVVBVBCKKCMVCMMCYY--- ------------------BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Reverse Complement Reverse Complement VAGGSCBBGSVGBBGBVVVBGHGGCGKRYCSR GBTGCAGGTGB GBTGCAGGTVBBGSVGBBGBVVVBGHGGCGKRYCSR Direction: Forward Position #: 5 Overlap #: 7 Alignment: ----VAGGSCBBGSVGBBGBVVVBGHGGCGKRYCSR GBTGCAGGTGB------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Reverse Complement Reverse Complement MSGKKRCGCCHCVVBVBCBBCVSCBVVACCTGCABC DHTATTTACBD DHTATTTACGDKRCGCCHCVVBVBCBBCVSCBVVACCTGCABC Direction: Forward Position #: 8 Overlap #: 4 Alignment: -------MSGKKRCGCCHCVVBVBCBBCVSCBVVACCTGCABC DHTATTTACBD-------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Reverse Complement GBTGCAGGTVBBGSVGBBGBVVVBGHGGCGKRDCGTAAATAHD HCAGAATGTHD VCWGMAKGTHDBGSVGBBGBVVVBGHGGCGKRDCGTAAATAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: GBTGCAGGTVBBGSVGBBGBVVVBGHGGCGKRDCGTAAATAHD HCAGAATGTHD-------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement VCWGMAKGTHDBGSVGBBGBVVVBGHGGCGKRDCGTAAATAHD GCVCCGCCMCCYCC VCWGMAKGTHDBGGCVCCGCCVCBBMVGCGKRDCGTAAATAHD Direction: Forward Position #: 14 Overlap #: 14 Alignment: VCWGMAKGTHDBGSVGBBGBVVVBGHGGCGKRDCGTAAATAHD -------------GCVCCGCCMCCYCC---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Reverse Complement Reverse Complement DHTATTTACGDKRCGCVRBBGBGGCGGVGCCBDDACRTYCWGV WWTAKTTCDKAATT WWTATTTMBKADWHGCVRBBGBGGCGGVGCCBDDACRTYCWGV Direction: Forward Position #: 1 Overlap #: 14 Alignment: DHTATTTACGDKRCGCVRBBGBGGCGGVGCCBDDACRTYCWGV WWTAKTTCDKAATT----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement WWTATTTMBKADWHGCVRBBGBGGCGGVGCCBDDACRTYCWGV BBGGGGCGGGGCGGB WWTATTTHBGRGKCGSGGCGGBGGCGGVGCCBDDACRTYCWGV Direction: Forward Position #: 8 Overlap #: 15 Alignment: WWTATTTMBKADWHGCVRBBGBGGCGGVGCCBDDACRTYCWGV -------BBGGGGCGGGGCGGB--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 36 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc cccGCCCCGCCCCsb Original Motif Original Motif HVGCCCCGCCCCBB BCCGCCCCGCCCCBB BCCGCCCCGCCCCBB Direction: Backward Position #: 1 Overlap #: 14 Alignment: -HVGCCCCGCCCCBB BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Reverse Complement BBGGGGCGGGGCGGB MSGGGGCGGGGYSG VSGGGGCGGGGCGGB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBGGGGCGGGGCGGB MSGGGGCGGGGYSG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement VSGGGGCGGGGCGGB MSGKKRCGCWDCABTGBBCD MSGGGGCGSKGCVBBGBBCD Direction: Forward Position #: 1 Overlap #: 15 Alignment: VSGGGGCGGGGCGGB----- MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement MSGGGGCGSKGCVBBGBBCD KKKAGGDGGAKKMGBBGKMG MSGGGGCGSKKBVGBDBGMKKMGBBGKMG Direction: Forward Position #: 10 Overlap #: 11 Alignment: MSGGGGCGSKGCVBBGBBCD--------- ---------KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif MSGGGGCGSKKBVGBDBGMKKMGBBGKMG RGRGGAGRRGGHGGDG MSGGGGCGSKKBVGBDDGMGGAGVVGGHGGDG Direction: Forward Position #: 17 Overlap #: 13 Alignment: MSGGGGCGSKKBVGBDBGMKKMGBBGKMG--- ----------------RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif MSGGGGCGSKKBVGBDDGMGGAGVVGGHGGDG BBVGCCBVGGCCTV MSGGGGCGSKKBVGBDDGMGGVGGVSBVGGCSTV Direction: Forward Position #: 21 Overlap #: 12 Alignment: MSGGGGCGSKKBVGBDDGMGGAGVVGGHGGDG-- --------------------BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement VASGCCBBSVCCBCCYCHHBCBBYYSCGCCCCSR GCVCCGCCMCCYCC VASGCCBBSVCCBCCYCHHBSCVCCGCSMCCCCV Direction: Forward Position #: 21 Overlap #: 14 Alignment: VASGCCBBSVCCBCCYCHHBCBBYYSCGCCCCSR --------------------GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Reverse Complement Reverse Complement VGGGGRSGCGGVGSBDDGMGGVGGVSBVGGCSTV SGGTCACGTGACCS VGGKSACGYGRCSSBDDGMGGVGGVSBVGGCSTV Direction: Forward Position #: 1 Overlap #: 14 Alignment: VGGGGRSGCGGVGSBDDGMGGVGGVSBVGGCSTV SGGTCACGTGACCS-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Original Motif VGGKSACGYGRCSSBDDGMGGVGGVSBVGGCSTV GGGGCCCAAGGGGG VGGKSACGBGGCCBDVGGGGGVGGVSBVGGCSTV Direction: Forward Position #: 8 Overlap #: 14 Alignment: VGGKSACGYGRCSSBDDGMGGVGGVSBVGGCSTV -------GGGGCCCAAGGGGG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Original Motif VGGKSACGBGGCCBDVGGGGGVGGVSBVGGCSTV CGGVGCCGCVGC VGGKSACGBGGCCBDVGGGGGVGGVGCCGSVGYV Direction: Forward Position #: 22 Overlap #: 12 Alignment: VGGKSACGBGGCCBDVGGGGGVGGVSBVGGCSTV ---------------------CGGVGCCGCVGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 37 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw wwAAATAATAtw Original Motif Original Motif HDAAATAATAHW HDAAATAATADD HDAAATAATAHW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATAHW HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Original Motif Original Motif HDAAATAATAHW AWAAAWTWAAASWA AWAAAWTWAAAVWAATAATAHW Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------HDAAATAATAHW AWAAAWTWAAASWA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Reverse Complement WHTATTATTWVTTTWAWTTTWT TWVHWWWYTTTYTTTTTHTTTVWBH WHTATTATTTDHTTWWTTTTHTTTTTHTTTVWBH Direction: Forward Position #: 10 Overlap #: 13 Alignment: WHTATTATTWVTTTWAWTTTWT------------ ---------TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif WHTATTATTTDHTTWWTTTTHTTTTTHTTTVWBH WTKTTTTTHWTTTTTTBT WHTATTATTTDHTTWWTTTTWTKTTTTTTTBTDTTTBT Direction: Forward Position #: 21 Overlap #: 14 Alignment: WHTATTATTTDHTTWWTTTTHTTTTTHTTTVWBH---- --------------------WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif ABAAADAVAAAAAAARAWAAAAWWAAHDAAATAATAHW AATHATATWTHAAA ABAAADAVAAAAAAARAWAAAAWWAADHAWATWWTAHA Direction: Forward Position #: 25 Overlap #: 14 Alignment: ABAAADAVAAAAAAARAWAAAAWWAAHDAAATAATAHW ------------------------AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Reverse Complement THTAWWATWTHDTTWWTTTTWTKTTTTTTTBTDTTTBT WAHHTVTTYKAAAAWTTRAT THTAWWATWTHDTTWWTTTTWTTWTTTDTTYTWWWWHTTRAT Direction: Forward Position #: 23 Overlap #: 16 Alignment: THTAWWATWTHDTTWWTTTTWTKTTTTTTTBTDTTTBT---- ----------------------WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement THTAWWATWTHDTTWWTTTTWTTWTTTDTTYTWWWWHTTRAT AAATTKTATTTAWT THTAWWATWTHDTTWAAWTTDTATTTWWTTYTWWWWHTTRAT Direction: Forward Position #: 16 Overlap #: 14 Alignment: THTAWWATWTHDTTWWTTTTWTTWTTTDTTYTWWWWHTTRAT ---------------AAATTKTATTTAWT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif THTAWWATWTHDTTWAAWTTDTATTTWWTTYTWWWWHTTRAT WWHTTTTTCABAAWTTWA THTAWWATWTHDTTWAAWTTDTATTTWWTTTTWWHWBWWDWTWA Direction: Forward Position #: 27 Overlap #: 16 Alignment: THTAWWATWTHDTTWAAWTTDTATTTWWTTYTWWWWHTTRAT-- --------------------------WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Original Motif THTAWWATWTHDTTWAAWTTDTATTTWWTTTTWWHWBWWDWTWA ACAAWTRATTTTGA ACAWWTRATWTTKADTTWAAWTTDTATTTWWTTTTWWHWBWWDWTWA Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---THTAWWATWTHDTTWAAWTTDTATTTWWTTTTWWHWBWWDWTWA ACAAWTRATTTTGA--------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Original Motif TWAWDWWVWDWWAAAAWWAAATADAAWTTWAADTYAAWATKAWWTGT AATTYDGAARTAWW TWAWDWWVWDWWAAAAWWAAATADAAWTTWAATTYARAADTAWWTGT Direction: Forward Position #: 31 Overlap #: 14 Alignment: TWAWDWWVWDWWAAAAWWAAATADAAWTTWAADTYAAWATKAWWTGT ------------------------------AATTYDGAARTAWW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 38 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb TFM12 Original Motif Original Motif BCCGCCCCGCCCCBB CYYCBBCYYYTCCHCCTYYY CYBCVGCCCCGCCCCBBYYY Direction: Forward Position #: 3 Overlap #: 15 Alignment: --BCCGCCCCGCCCCBB--- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif KKKVBGGGGCGGGGCVGBMG RGRGGAGRRGGHGGDG KKGVVGGRGVGGGGVGDGMG Direction: Forward Position #: 3 Overlap #: 16 Alignment: KKKVBGGGGCGGGGCVGBMG --RGRGGAGRRGGHGGDG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif KKGVVGGRGVGGGGVGDGMG DGVBCABTGDWGCGKRRCSR KKGVVGGRGVGGGVVVBGHGGCGKRRCSR Direction: Forward Position #: 10 Overlap #: 11 Alignment: KKGVVGGRGVGGGGVGDGMG--------- ---------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Original Motif MSGKKRCGCCHCVVBVCCCVCMCCVVCYY HVGCCCCGCCCCBB MSGKKRCGCCHCVVBVCVSCCCCSCCCCBB Direction: Forward Position #: 17 Overlap #: 13 Alignment: MSGKKRCGCCHCVVBVCCCVCMCCVVCYY- ----------------HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif MSGKKRCGCCHCVVBVCVSCCCCSCCCCBB CSKCCCCGCCCCSY MSGKKRCGCCHCVVBVCVBCSCCCCSCCCCSY Direction: Forward Position #: 19 Overlap #: 12 Alignment: MSGKKRCGCCHCVVBVCVSCCCCSCCCCBB-- ------------------CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif MSGKKRCGCCHCVVBVCVBCSCCCCSCCCCSY BBVGCCBVGGCCTV MSGKKRCGCCHCVVBVCVBSBCSCCBCSSCCTV Direction: Forward Position #: 20 Overlap #: 13 Alignment: MSGKKRCGCCHCVVBVCVBCSCCCCSCCCCSY- -------------------BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement MSGKKRCGCCHCVVBVCVBSBCSCCBCSSCCTV GCVCCGCCMCCYCC MSGKKRCGCCHCVVBVCVBSCVCCSCCVSCYYS Direction: Forward Position #: 20 Overlap #: 14 Alignment: MSGKKRCGCCHCVVBVCVBSBCSCCBCSSCCTV -------------------GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Original Motif MSGKKRCGCCHCVVBVCVBSCVCCSCCVSCYYS SGGTCACGTGACCS VSGTBACGYSWCVVBVCVBSCVCCSCCVSCYYS Direction: Forward Position #: 1 Overlap #: 14 Alignment: MSGKKRCGCCHCVVBVCVBSCVCCSCCVSCYYS SGGTCACGTGACCS------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Reverse Complement VSGTBACGYSWCVVBVCVBSCVCCSCCVSCYYS CCCCCTTGGGCCCC VSGTBACGYSWCVVBVCVBSCCCCCCYHVSSCCCC Direction: Forward Position #: 22 Overlap #: 12 Alignment: VSGTBACGYSWCVVBVCVBSCVCCSCCVSCYYS-- ---------------------CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Reverse Complement Original Motif GGGGSSVHKGGGGGGSBVGVVVVGWSKCGTBACSV CGGVGCCGCVGC GGGGSSVHKGGGGGGSBVGVVVGGHGBCGYBRCSV Direction: Forward Position #: 22 Overlap #: 12 Alignment: GGGGSSVHKGGGGGGSBVGVVVVGWSKCGTBACSV ---------------------CGGVGCCGCVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 39 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr tkAAATAATAtw Reverse Complement Reverse Complement MBATTGGCTGH WHTATTATTTDH WVTATTRKYTVH Direction: Forward Position #: 2 Overlap #: 11 Alignment: -MBATTGGCTGH WHTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Reverse Complement HVAKYMAATABW HCAGAATGTHD HCAGAAWRTMDW Direction: Forward Position #: 1 Overlap #: 11 Alignment: HVAKYMAATABW HCAGAATGTHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Original Motif HCAGAAWRTMDW HDAAATAATADD HHARAWAATADW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HCAGAAWRTMDW HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Reverse Complement Reverse Complement WDTATTWTMTDH GBTGCAGGTGB WDTATTWDHTGCAGGTGB Direction: Forward Position #: 8 Overlap #: 5 Alignment: WDTATTWTMTDH------ -------GBTGCAGGTGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Reverse Complement Reverse Complement BCACCTGCADDWAATADW GCVCCGCCMCCYCC GCVCCGCCACCTSCADDWAATADW Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------BCACCTGCADDWAATADW GCVCCGCCMCCYCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Original Motif GCVCCGCCACCTSCADDWAATADW HDWVAAAHAAAAAMAAAMWWWHBWA GCVCCGHCAMMHVMADAHAAWAHWWHBWA Direction: Forward Position #: 5 Overlap #: 20 Alignment: GCVCCGCCACCTSCADDWAATADW----- ----HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 40 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc wsTACwGTAsw Original Motif Reverse Complement BCACCTGCABC DBTACWGTAVH DBWMCTGYAVH Direction: Forward Position #: 1 Overlap #: 11 Alignment: BCACCTGCABC DBTACWGTAVH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Original Motif DVTKCAGYWBD DHACATTCTGH DHACATTCWGYWBD Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---DVTKCAGYWBD DHACATTCTGH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 41 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw tkAAATAATAtw Original Motif Original Motif HDAAATAATADD HDAAATAATAHW HDAAATAATAHW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATADD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Original Motif Original Motif HDAAATAATAHW AWAAAWTWAAASWA AWAAAWTWAAAVWAATAATAHW Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------HDAAATAATAHW AWAAAWTWAAASWA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif WHTATTATTWVTTTWAWTTTWT WTKTTTTTHWTTTTTTBT WHTATTATTWVWTTTWTTTTWTTTTTTBT Direction: Forward Position #: 12 Overlap #: 11 Alignment: WHTATTATTWVTTTWAWTTTWT------- -----------WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement WHTATTATTWVWTTTWTTTTWTTTTTTBT TWVHWWWYTTTYTTTTTHTTTVWBH WHTATTATTWVWTTTWDTTWWTTTTTTBTTTHTTTVWBH Direction: Forward Position #: 15 Overlap #: 15 Alignment: WHTATTATTWVWTTTWTTTTWTTTTTTBT---------- --------------TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Reverse Complement WHTATTATTWVWTTTWDTTWWTTTTTTBTTTHTTTVWBH TTTDAWATATHATT WHTATTATTWVWTTTWDTTWWTTTTTTBWWWTWTTRWTH Direction: Forward Position #: 25 Overlap #: 14 Alignment: WHTATTATTWVWTTTWDTTWWTTTTTTBTTTHTTTVWBH ------------------------TTTDAWATATHATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif WHTATTATTWVWTTTWDTTWWTTTTTTBWWWTWTTRWTH ATKAAWTTTTRMAABAHHTW WHTATTATTWVWTTTWDTTWWTTWTTWWWWTTWDWAWTAHHTW Direction: Forward Position #: 24 Overlap #: 16 Alignment: WHTATTATTWVWTTTWDTTWWTTTTTTBWWWTWTTRWTH---- -----------------------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Original Motif WAHHTAWTWDWAAWWWWAAWAAWWAADWAAAWVWAATAATAHW AWTAAATAYAATTT WAHHTAWTWDWAAWWWWAAWAAWWAAWTAAATAHAATWWTAHW Direction: Forward Position #: 26 Overlap #: 14 Alignment: WAHHTAWTWDWAAWWWWAAWAAWWAADWAAAWVWAATAATAHW -------------------------AWTAAATAYAATTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif WHTAWWATTHTATTTAWTTWWTTWTTWWWWTTWDWAWTAHHTW WWHTTTTTCABAAWTTWA WHTAWWATTHTATTTAWTTWWTTWTTWWWTTTWWCAHWAHHTWA Direction: Forward Position #: 27 Overlap #: 17 Alignment: WHTAWWATTHTATTTAWTTWWTTWTTWWWWTTWDWAWTAHHTW- --------------------------WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Reverse Complement TWAHHTWHTGWWAAAWWWAAWAAWWAAWTAAATAHAATWWTAHW TCAAAATKAWTTGT TCAAAATDAWTTGTTGWWAAAWWWAAWAAWWAAWTAAATAHAATWWTAHW Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------TWAHHTWHTGWWAAAWWWAAWAAWWAAWTAAATAHAATWWTAHW TCAAAATKAWTTGT------------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Original Motif TCAAAATDAWTTGTTGWWAAAWWWAAWAAWWAAWTAAATAHAATWWTAHW AATTYDGAARTAWW TCAAAATDAWTTGTTGWWAAAWWWAAWAAWAAWTTARAWAWAATWWTAHW Direction: Forward Position #: 31 Overlap #: 14 Alignment: TCAAAATDAWTTGTTGWWAAAWWWAAWAAWWAAWTAAATAHAATWWTAHW ------------------------------AATTYDGAARTAWW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 42 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Pax5 Original Motif Original Motif SGGTCACGTGACCS DGVBCABTGDWGCGKRRCSR DGVBCABBGWHRCGTGACSV Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------SGGTCACGTGACCS DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Reverse Complement Reverse Complement VSGTCACGKDWCBBTGBBCD BBGGGGCGGGGCVD VSGKSRCGGGGCBBTGBBCD Direction: Forward Position #: 1 Overlap #: 14 Alignment: VSGTCACGKDWCBBTGBBCD BBGGGGCGGGGCVD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Original Motif HGVBCABBGCCCCGMSYCSV BCCGCCCCGCCCCBB HGVBCRCCSCSCCSCSBCSV Direction: Forward Position #: 3 Overlap #: 15 Alignment: HGVBCABBGCCCCGMSYCSV --BCCGCCCCGCCCCBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Reverse Complement VSGBSGSGGSGSGGMGBVCD MSGGGGCGGGGYSG VSVBGGGGSGGGGBVGBVCD Direction: Forward Position #: 3 Overlap #: 14 Alignment: VSGBSGSGGSGSGGMGBVCD --MSGGGGCGGGGYSG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement HGVBCVBCCCCSCCCCBVSV GCVCCGCCMCCYCC HGVSCVCCSCCVCCCCCVSV Direction: Forward Position #: 4 Overlap #: 14 Alignment: HGVBCVBCCCCSCCCCBVSV ---GCVCCGCCMCCYCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Original Motif HGVSCVCCSCCVCCCCCVSV CGGVGCCGCVGC HGVSCGSCGCCGCVBCCVSV Direction: Forward Position #: 5 Overlap #: 12 Alignment: HGVSCVCCSCCVCCCCCVSV ----CGGVGCCGCVGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Original Motif HGVSCGSCGCCGCVBCCVSV BCACCTGCABC BCACCTGCAVSCGSCGCCGCVBCCVSV Direction: Forward Position #: 8 Overlap #: 4 Alignment: -------HGVSCGSCGCCGCVBCCVSV BCACCTGCABC---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 Combined Motif Reverse Complement Original Motif VSVGGBVGCGGCGSCGSVTGCAGGTGB CGGCYBCGCG VSVGGBVGCGGCBSCGCSTGCAGGTGB Direction: Forward Position #: 9 Overlap #: 10 Alignment: VSVGGBVGCGGCGSCGSVTGCAGGTGB --------CGGCYBCGCG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 Combined Motif Original Motif Reverse Complement VSVGGBVGCGGCBSCGCSTGCAGGTGB YCGCCCACGCH VSVGGBVBCGSCCVCGCVTGCAGGTGB Direction: Forward Position #: 8 Overlap #: 11 Alignment: VSVGGBVGCGGCBSCGCSTGCAGGTGB -------YCGCCCACGCH--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Reverse Complement VSVGGBVBCGSCCVCGCVTGCAGGTGB CCCCCTTGGGCCCC CCCCCBDGGSCCCSSCCVCGCVTGCAGGTGB Direction: Forward Position #: 5 Overlap #: 10 Alignment: ----VSVGGBVBCGSCCVCGCVTGCAGGTGB CCCCCTTGGGCCCC----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 43 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw kcACCTGCAgc Original Motif Reverse Complement HVTACWGTABD GBTGCAGGTGB DVTRCAGKWBH Direction: Backward Position #: 1 Overlap #: 11 Alignment: HVTACWGTABD GBTGCAGGTGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Reverse Complement DVTRCAGKWBH DDTATTATTTDH DVTAYWRTWDDH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DVTRCAGKWBH- DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Reverse Complement DVTAYWRTWDDH WHTATTATTTDH DHTATTATTTDH Direction: Forward Position #: 1 Overlap #: 12 Alignment: DVTAYWRTWDDH WHTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Reverse Complement DHTATTATTTDH WWTAKTTCDKAATT WWTATTWYTKAATT Direction: Forward Position #: 1 Overlap #: 12 Alignment: DHTATTATTTDH-- WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Reverse Complement Original Motif AATTRAMWAATAWW DBGTAAATAHD AATBRWAAAWWAHW Direction: Forward Position #: 3 Overlap #: 11 Alignment: AATTRAMWAATAWW --DBGTAAATAHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif AATBRWAAAWWAHW AATHATATWTHAAA AATHRTAWWTHAAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AATBRWAAAWWAHW AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Original Motif TTTHAWWTAKHATT WWHTTTTTCABAAWTTWA WWHTTTTTCABAAWTTWAWWTAKHATT Direction: Forward Position #: 14 Overlap #: 5 Alignment: -------------TTTHAWWTAKHATT WWHTTTTTCABAAWTTWA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif AATHRTAWWTWAAWTTVTGAAAAAHWW DGVBCABTGDWGCGKRRCSR AATHRTAWWTDRHDYWVTGAWRMRDDDCSR Direction: Forward Position #: 11 Overlap #: 17 Alignment: AATHRTAWWTWAAWTTVTGAAAAAHWW--- ----------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif MSGDDDKYMWTCAVWMDHKDAWWTAKHATT ATKAAWTTTTRMAABAHHTW MSGDDDKYMWTCAVWMATKWAWWTWTRAWWBAHHTW Direction: Forward Position #: 17 Overlap #: 14 Alignment: MSGDDDKYMWTCAVWMDHKDAWWTAKHATT------ ----------------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Original Motif WAHHTVWWTKAWAWWTWRATYWVTGAWRMRDDDCSR TTCWTAGATTAWA TWCWTADATTAWAWWTWRATYWVTGAWRMRDDDCSR Direction: Forward Position #: 1 Overlap #: 13 Alignment: WAHHTVWWTKAWAWWTWRATYWVTGAWRMRDDDCSR TTCWTAGATTAWA----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 44 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh TFM3 Original Motif Reverse Complement DHACATTCTGH TWAAWTTVTGAAAAAHWW TWAMATTCTGWAAAAHWW Direction: Backward Position #: 8 Overlap #: 11 Alignment: DHACATTCTGH------- TWAAWTTVTGAAAAAHWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Original Motif TWAMATTCTGWAAAAHWW BCACCTGCABC BHACMTKCWGHAAAAHWW Direction: Forward Position #: 1 Overlap #: 11 Alignment: TWAMATTCTGWAAAAHWW BCACCTGCABC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Original Motif WWHTTTTDCWGYARGTDV ACAAWTRATTTTGA ACAAWTDATTTTGMWGYARGTDV Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----WWHTTTTDCWGYARGTDV ACAAWTRATTTTGA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Reverse Complement Original Motif BHACMTKCWYCAAAATDAWTTGT HDAAATAATADD BHACMTDMAWYAAWATDAWTTGT Direction: Forward Position #: 6 Overlap #: 12 Alignment: BHACMTKCWYCAAAATDAWTTGT -----HDAAATAATADD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement BHACMTDMAWYAAWATDAWTTGT TWVHWWWYTTTYTTTTTHTTTVWBH BHACMTDMAWTAAWAWWWWTTGTTTTTHTTTVWBH Direction: Forward Position #: 11 Overlap #: 13 Alignment: BHACMTDMAWYAAWATDAWTTGT------------ ----------TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Reverse Complement BHACMTDMAWTAAWAWWWWTTGTTTTTHTTTVWBH WAHHTVTTYKAAAAWTTRAT BHACMTDMAWTAAWAWWWWTTDTHTDTTTTWVAWWTTRAT Direction: Forward Position #: 21 Overlap #: 15 Alignment: BHACMTDMAWTAAWAWWWWTTGTTTTTHTTTVWBH----- --------------------WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Reverse Complement BHACMTDMAWTAAWAWWWWTTDTHTDTTTTWVAWWTTRAT WHTATTATTTDH BHACMTDMAWTAAWAWWWWTTDTHTDTHTWTTATTTWDAT Direction: Forward Position #: 27 Overlap #: 12 Alignment: BHACMTDMAWTAAWAWWWWTTDTHTDTTTTWVAWWTTRAT --------------------------WHTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Reverse Complement ATDWAAATAAWAHADAHADAAWWWWTWTTAWTRDARGTDV WWTAKTTCDKAATT ATDWAAATAAWAHADAHADAAWWWWWWTWDTTVDDARTWV Direction: Forward Position #: 26 Overlap #: 14 Alignment: ATDWAAATAAWAHADAHADAAWWWWTWTTAWTRDARGTDV -------------------------WWTAKTTCDKAATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kCAGCCAATmr Reverse Complement Original Motif BWAKTDDVAADWAWWWWWWTTDTHTDTHTWTTATTTWDAT DCAGCCAATVR DCAGCCAATDDDVAADWAWWWWWWTTDTHTDTHTWTTATTTWDAT Direction: Forward Position #: 6 Overlap #: 6 Alignment: -----BWAKTDDVAADWAWWWWWWTTDTHTDTHTWTTATTTWDAT DCAGCCAATVR---------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif GABPA Reverse Complement Original Motif ATDWAAATAAWAHADAHADAAWWWWWWTWDTTVDHDATTGGCTGH CCGGAAGTGVV CCGGAARTDDHAATAAWAHADAHADAAWWWWWWTWDTTVDHDATTGGCTGH Direction: Forward Position #: 7 Overlap #: 5 Alignment: ------ATDWAAATAAWAHADAHADAAWWWWWWTWDTTVDHDATTGGCTGH CCGGAAGTGVV---------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 45 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww tkAAATAATAtw Original Motif Original Motif DBGTAAATAHD HDAAATAATAHW HDHRWWAATAHD Direction: Backward Position #: 1 Overlap #: 11 Alignment: -DBGTAAATAHD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Original Motif HDHRWWAATAHD HDAAATAATADD HDAAATAATAHD Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDHRWWAATAHD HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Reverse Complement Reverse Complement DHTATTATTTDH TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWWYTTTYTTTTWTWTTHWTHDH Direction: Forward Position #: 16 Overlap #: 10 Alignment: ---------------DHTATTATTTDH TWVHWWWYTTTYTTTTTHTTTVWBH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif TWVHWWWYTTTYTTTTWTWTTHWTHDH AATHATATWTHAAA TWVHWWWYTTTYTTTWWTWWTATTTHAAA Direction: Forward Position #: 16 Overlap #: 12 Alignment: TWVHWWWYTTTYTTTTWTWTTHWTHDH-- ---------------AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Reverse Complement TWVHWWWYTTTYTTTWWTWWTATTTHAAA WWTAKTTCDKAATT TWVHWWWYTTTYTTTWWTWTWDTTYDDAATT Direction: Forward Position #: 18 Overlap #: 12 Alignment: TWVHWWWYTTTYTTTWWTWWTATTTHAAA-- -----------------WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Reverse Complement AATTDDKAADWAWAWWAAAMAAAMWWWHBWA ABAAAAAAWHAAAAARAW AATTDDKAADWAWAWWAAVAAAAAAWDHDAAARAW Direction: Forward Position #: 18 Overlap #: 14 Alignment: AATTDDKAADWAWAWWAAAMAAAMWWWHBWA---- -----------------ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif WTKTTTDHDWTTTTTTBTTWWTWTWDTTYDDAATT WWHTTTTTCABAAWTTWA WTKTTTDHDWTTTTTTBTTWWWWTWKTTCWDAATTTWA Direction: Forward Position #: 21 Overlap #: 15 Alignment: WTKTTTDHDWTTTTTTBTTWWTWTWDTTYDDAATT--- --------------------WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif TWAAATTDWGAARWAWWWWAAVAAAAAAWDHDAAARAW ATKAAWTTTTRMAABAHHTW TWAAATTDWGAARWAWWWWAAVAWAAAAWTHWAAAAWAHHTW Direction: Forward Position #: 23 Overlap #: 16 Alignment: TWAAATTDWGAARWAWWWWAAVAAAAAAWDHDAAARAW---- ----------------------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Original Motif TWAAATTDWGAARWAWWWWAAVAWAAAAWTHWAAAAWAHHTW AAAAWTTRCWT TWAAATTDWGAARWAWWWWAAVAWAAAAAWWTWAMHWAHHTW Direction: Forward Position #: 27 Overlap #: 11 Alignment: TWAAATTDWGAARWAWWWWAAVAWAAAAWTHWAAAAWAHHTW --------------------------AAAAWTTRCWT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement WAHHTWHYTWAWWTTTTTWTBTTWWWWTWKTTCWDAATTTWA TWSTTTWAWTTTWT WAHHTWHYTWAWWTTTTTWTBTTWWWWTWBTTYWHAWTTWTA Direction: Forward Position #: 28 Overlap #: 14 Alignment: WAHHTWHYTWAWWTTTTTWTBTTWWWWTWKTTCWDAATTTWA ---------------------------TWSTTTWAWTTTWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 46 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 TFW3 Original Motif Original Motif GTCGCG CGGCYBCGCG CGGCGBCGCG Direction: Backward Position #: 1 Overlap #: 6 Alignment: ----GTCGCG CGGCYBCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Reverse Complement CGGCGBCGCG SGGTCACGTGACCS CGGYSACGYGACCS Direction: Forward Position #: 1 Overlap #: 10 Alignment: CGGCGBCGCG---- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement CGGYSACGYGACCS GCVCCGCCMCCYCC CGGCVMCGCSACCBCC Direction: Forward Position #: 3 Overlap #: 12 Alignment: CGGYSACGYGACCS-- --GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Reverse Complement Original Motif GGBGGTSGCGRVGCCG CGGVGCCGCVGC GGBGGHGSCGVVGCCG Direction: Forward Position #: 3 Overlap #: 12 Alignment: GGBGGTSGCGRVGCCG --CGGVGCCGCVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 Combined Motif Reverse Complement Reverse Complement CGGCVVCGSCHCCBCC CCGCGCGS CGGCCGCGCSBCCBCC Direction: Forward Position #: 4 Overlap #: 8 Alignment: CGGCVVCGSCHCCBCC ---CCGCGCGS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Original Motif CGGCCGCGCSBCCBCC HSCACGTGGC CGSMCGYGSSBCCBCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: CGGCCGCGCSBCCBCC HSCACGTGGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Reverse Complement GGBGGBSSCKCGYSCG BBGGGGCGGGGCVD GGBGGGGCSGSGCSSG Direction: Forward Position #: 2 Overlap #: 14 Alignment: GGBGGBSSCKCGYSCG -BBGGGGCGGGGCVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Original Motif Original Motif GGBGGGGCSGSGCSSG GGCGGGGC GGCGGGGCSGSGCSSG Direction: Forward Position #: 1 Overlap #: 8 Alignment: GGBGGGGCSGSGCSSG GGCGGGGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Original Motif CSSGCSCSGCCCCGCC BCCGCCCCGCCCCBB VSCGCCCCGCCCCGCC Direction: Forward Position #: 1 Overlap #: 15 Alignment: CSSGCSCSGCCCCGCC BCCGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif VSCGCCCCGCCCCGCC CSKCCCCGCCCCSY VCCGCCCCGCCCCSYC Direction: Forward Position #: 2 Overlap #: 14 Alignment: VSCGCCCCGCCCCGCC -CSKCCCCGCCCCSY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 47 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 csGCCCCGCCCCsc Reverse Complement Original Motif CCGCGCGS HVGCCCCGCCCCBB HCSSCSCGCCCCBB Direction: Forward Position #: 2 Overlap #: 8 Alignment: -CCGCGCGS----- HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Original Motif HCSSCSCGCCCCBB BCCGCCCCGCCCCBB BCCGCCCCGCCCCSSCSCGCCCCBB Direction: Forward Position #: 12 Overlap #: 4 Alignment: -----------HCSSCSCGCCCCBB BCCGCCCCGCCCCBB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif BCCGCCCCGCCCCSSCSCGCCCCBB CSKCCCCGCCCCSY BCCGCCCCGCCCCSBCSCSCCSCCCCSY Direction: Forward Position #: 15 Overlap #: 11 Alignment: BCCGCCCCGCCCCSSCSCGCCCCBB--- --------------CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Combined Motif Original Motif Reverse Complement BCCGCCCCGCCCCSBCSCSCCSCCCCSY GCCACGTGSD BCCGCCCCGCCMCGTSSCSCCSCCCCSY Direction: Forward Position #: 9 Overlap #: 10 Alignment: BCCGCCCCGCCCCSBCSCSCCSCCCCSY --------GCCACGTGSD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Reverse Complement Original Motif MSGGGGSGGSGSSACGRGGCGGGGCGGB VGCACGTGGH MSSRSGBGGBGSSACGRGGCGGGGCGGB Direction: Forward Position #: 1 Overlap #: 10 Alignment: MSGGGGSGGSGSSACGRGGCGGGGCGGB VGCACGTGGH------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif MSSRSGBGGBGSSACGRGGCGGGGCGGB GGMGGRGGCGGVGC MSSRSGBGGBGSSACGGGGSGGGGCGGVGC Direction: Forward Position #: 17 Overlap #: 12 Alignment: MSSRSGBGGBGSSACGRGGCGGGGCGGB-- ----------------GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Original Motif MSSRSGBGGBGSSACGGGGSGGGGCGGVGC CGGVGCCGCVGC MSSRSGBGGBGSSACGGGVGGRGSCGSVGC Direction: Forward Position #: 19 Overlap #: 12 Alignment: MSSRSGBGGBGSSACGGGGSGGGGCGGVGC ------------------CGGVGCCGCVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFAP2A Combined Motif Reverse Complement Original Motif GCVSCGSCMCCVCCCGTSSCBCCVCSKSSY GCCBBVRGS GCVSCGSCMCCVCCCGTSSGCCCVCGKSSY Direction: Forward Position #: 20 Overlap #: 9 Alignment: GCVSCGSCMCCVCCCGTSSCBCCVCSKSSY -------------------GCCBBVRGS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Reverse Complement Reverse Complement MSSYCGVGGGCSSACGGGVGGRGSCGSVGC GGGGGYGGGG MSSYCGVGGGCSSACGGGVGGGGGCGGGGC Direction: Forward Position #: 20 Overlap #: 10 Alignment: MSSYCGVGGGCSSACGGGVGGRGSCGSVGC -------------------GGGGGYGGGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif MSSYCGVGGGCSSACGGGVGGGGGCGGGGC BBVGCCBVGGCCTV MSSYCGVGGGCSSACGGGVGGGSSBGGGSCTV Direction: Forward Position #: 19 Overlap #: 12 Alignment: MSSYCGVGGGCSSACGGGVGGGGGCGGGGC-- ------------------BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 48 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 TFF1 Original Motif Original Motif CGGCYBCGCG CGGVGCCGCVGC CGGCKCCGCGGC Direction: Backward Position #: 3 Overlap #: 10 Alignment: CGGCYBCGCG-- CGGVGCCGCVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Reverse Complement CGGCKCCGCGGC YCGCCCACGCH YCGSCSVCGCVGC Direction: Forward Position #: 2 Overlap #: 10 Alignment: -CGGCKCCGCGGC YCGCCCACGCH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Original Motif YCGSCSVCGCVGC GGMGGRGGCGGVGC GGMGGRGGCGBCGSCSVCGCVGC Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------YCGSCSVCGCVGC GGMGGRGGCGGVGC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement GGMGGRGGCGBCGSCSVCGCVGC MSGKKRCGCWDCABTGBBCD GGMSGDGGCGCHGCMBHSGCMGC Direction: Forward Position #: 3 Overlap #: 20 Alignment: GGMGGRGGCGBCGSCSVCGCVGC --MSGKKRCGCWDCABTGBBCD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif GCRGCSHBRGCHGCGCCHCSYCC CSKCCCCGCCCCSY GCRGCSHSGSCCSSSCCCCBYCC Direction: Forward Position #: 7 Overlap #: 14 Alignment: GCRGCSHBRGCHGCGCCHCSYCC ------CSKCCCCGCCCCSY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Original Motif GCRGCSHSGSCCSSSCCCCBYCC HVGCCCCGCCCCBB GCRGCVVGSCCCGCCCCBBBYCC Direction: Forward Position #: 6 Overlap #: 14 Alignment: GCRGCSHSGSCCSSSCCCCBYCC -----HVGCCCCGCCCCBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Reverse Complement GGMBBBGGGGCGGGSCVVGCMGC BBGGGGCGGGGCGGB GGMBBBGGGGCGGGGCGBBCMGC Direction: Forward Position #: 5 Overlap #: 15 Alignment: GGMBBBGGGGCGGGSCVVGCMGC ----BBGGGGCGGGGCGGB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif GCRGBBCGCCCCGCCCCBBBYCC BBVGCCBVGGCCTV GCRGBBVGCCCCGSCCYBBBYCC Direction: Forward Position #: 5 Overlap #: 14 Alignment: GCRGBBCGCCCCGCCCCBBBYCC ----BBVGCCBVGGCCTV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif GCRGBBVGCCCCGSCCYBBBYCC CYYCBBCYYYTCCHCCTYYY GCRGBBVGCCCCBSCCYCHYYYCCHCCTYYY Direction: Forward Position #: 12 Overlap #: 12 Alignment: GCRGBBVGCCCCGSCCYBBBYCC-------- -----------CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement GCRGBBVGCCCCBSCCYCHYYYCCHCCTYYY CHCCBCCKMCTCCKCM GCRGBBVGCCCCBSCCYCCHCCCCCBCHTCCKCM Direction: Forward Position #: 19 Overlap #: 13 Alignment: GCRGBBVGCCCCBSCCYCHYYYCCHCCTYYY--- ------------------CHCCBCCKMCTCCKCM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 49 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 TFF11 Original Motif Original Motif CGGVGCCGCVGC GGMGGRGGCGGVGC GGVGGVGSCGSVGC Direction: Backward Position #: 1 Overlap #: 12 Alignment: --CGGVGCCGCVGC GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Reverse Complement GGVGGVGSCGSVGC BBGGGGCGGGGCVD GGVGGGSGSGGCGS Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGVGGVGSCGSVGC BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Original Motif SCGCCSCSCCCVCC CYYCBBCYYYTCCHCCTYYY CYYCBBCYYYTCCHSCDCCCCSCCCVCC Direction: Forward Position #: 15 Overlap #: 6 Alignment: --------------SCGCCSCSCCCVCC CYYCBBCYYYTCCHCCTYYY-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif CYYCBBCYYYTCCHSCDCCCCSCCCVCC BCCGCCCCGCCCCBB CYYCBBCYYYTCCHSCBCCSCCCCSCCCCBB Direction: Forward Position #: 17 Overlap #: 12 Alignment: CYYCBBCYYYTCCHSCDCCCCSCCCVCC--- ----------------BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif BBGGGGSGGGGSGGBGSDGGAKKMGBBGKMG DGVBCABTGDWGCGKRRCSR BBGGGGSGGGGSGGBGSDGGVBDHKGVDGMGKRRCSR Direction: Forward Position #: 18 Overlap #: 14 Alignment: BBGGGGSGGGGSGGBGSDGGAKKMGBBGKMG------ -----------------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Reverse Complement MSGKKRCRCHBCYDDBVCCHSCBCCSCCCCSCCCCBB CHCCBCCKMCTCCKCM MSGKKRCRCHBCYDDBVCCHSCCHCVCCCBSCYCCKVM Direction: Forward Position #: 23 Overlap #: 15 Alignment: MSGKKRCRCHBCYDDBVCCHSCBCCSCCCCSCCCCBB- ----------------------CHCCBCCKMCTCCKCM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif MSGKKRCRCHBCYDDBVCCHSCCHCVCCCBSCYCCKVM CSKCCCCGCCCCSY MSGKKRCRCHBCYDDBVCCHSCCCCBCCCCGCCCCBHM Direction: Forward Position #: 24 Overlap #: 14 Alignment: MSGKKRCRCHBCYDDBVCCHSCCHCVCCCBSCYCCKVM -----------------------CSKCCCCGCCCCSY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Reverse Complement MSGKKRCRCHBCYDDBVCCHSCCCCBCCCCGCCCCBHM SGGTCACGTGACCS VSGTBACGYVACCVDBVCCHSCCCCBCCCCGCCCCBHM Direction: Forward Position #: 1 Overlap #: 14 Alignment: MSGKKRCRCHBCYDDBVCCHSCCCCBCCCCGCCCCBHM SGGTCACGTGACCS------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif VSGTBACGYVACCVDBVCCHSCCCCBCCCCGCCCCBHM BBVGCCBVGGCCTV VSGTBACGYVACCVDBVCCHSCCBSBSCCBVSSCCTBM Direction: Forward Position #: 24 Overlap #: 14 Alignment: VSGTBACGYVACCVDBVCCHSCCCCBCCCCGCCCCBHM -----------------------BBVGCCBVGGCCTV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Original Motif RBAGGSSVBGGSBSBGGSDGGVBDVGGTVMCGTBACSV GGGGCCCAAGGGGG RBAGGSSVBGGSBGGGGSBVDVGGGGGTVMCGTBACSV Direction: Forward Position #: 14 Overlap #: 14 Alignment: RBAGGSSVBGGSBSBGGSDGGVBDVGGTVMCGTBACSV -------------GGGGCCCAAGGGGG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 50 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 TFM2 Original Motif Original Motif GGMGGRGGCGGVGC RGRGGAGRRGGHGGDG GGAGGRGGVGGVGSDG Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGMGGRGGCGGVGC-- RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Original Motif CHSCBCCVCCKCCTCC CYYCBBCYYYTCCHCCTYYY CYYCBBCYYYTCCHCCHBCBCCVCCKCCTCC Direction: Forward Position #: 16 Overlap #: 5 Alignment: ---------------CHSCBCCVCCKCCTCC CYYCBBCYYYTCCHCCTYYY----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif CYYCBBCYYYTCCHCCHBCBCCVCCKCCTCC BCCGCCCCGCCCCBB CYYCBBCYYYTCCHCCHBCCSCCCCGCCCCVB Direction: Forward Position #: 18 Overlap #: 14 Alignment: CYYCBBCYYYTCCHCCHBCBCCVCCKCCTCC- -----------------BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement CYYCBBCYYYTCCHCCHBCCSCCCCGCCCCVB MSGKKRCGCWDCABTGBBCD CYYCBBCYYYTCCHCCHBCSGCBMCGCHBCVBTGBBCD Direction: Forward Position #: 19 Overlap #: 14 Alignment: CYYCBBCYYYTCCHCCHBCCSCCCCGCCCCVB------ ------------------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Reverse Complement HGVBCABVGVDGCGRBGCSGBHGGDGGAKKMGBBGKMG BBGGGGCGGGGCVD HGVBCABVGVDGCGRBGCSGBHGSGGGGCGVGGCGGMG Direction: Forward Position #: 23 Overlap #: 14 Alignment: HGVBCABVGVDGCGRBGCSGBHGGDGGAKKMGBBGKMG ----------------------BBGGGGCGGGGCVD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Reverse Complement HGVBCABVGVDGCGRBGCSGBHGSGGGGCGVGGCGGMG MSGGGGCGGGGYSG HGVBCABVGVDGCGRBGCSGBHGVGGGGGSGGGSBGVG Direction: Forward Position #: 24 Overlap #: 14 Alignment: HGVBCABVGVDGCGRBGCSGBHGSGGGGCGVGGCGGMG -----------------------MSGGGGCGGGGYSG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Original Motif Original Motif HGVBCABVGVDGCGRBGCSGBHGVGGGGGSGGGSBGVG RGRAGARRGARRAR HGVBCABVGVDGCGRBGCSGBHRRRRGRGVGGGGHRVG Direction: Forward Position #: 23 Overlap #: 14 Alignment: HGVBCABVGVDGCGRBGCSGBHGVGGGGGSGGGSBGVG ----------------------RGRAGARRGARRAR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Original Motif HGVBCABVGVDGCGRBGCSGBHRRRRGRGVGGGGHRVG GGGGCCCAAGGGGG HGVBCABVGVDGCGGGGCCVDMGGGGGRGVGGGGHRVG Direction: Forward Position #: 14 Overlap #: 14 Alignment: HGVBCABVGVDGCGRBGCSGBHRRRRGRGVGGGGHRVG -------------GGGGCCCAAGGGGG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement HGVBCABVGVDGCGGGGCCVDMGGGGGRGVGGGGHRVG VAGGCCBBGGCVBB HGVBCABVGVDGCGGGGCCVDMGSRGGSSBBGGVVVVG Direction: Forward Position #: 24 Overlap #: 14 Alignment: HGVBCABVGVDGCGGGGCCVDMGGGGGRGVGGGGHRVG -----------------------VAGGCCBBGGCVBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Original Motif HGVBCABVGVDGCGGGGCCVDMGSRGGSSBBGGVVVVG CGGVGCCGCVGC HGVBCABVGVDGCGGGGCCVDMGSVGGVSCSGSVGCVG Direction: Forward Position #: 25 Overlap #: 12 Alignment: HGVBCABVGVDGCGGGGCCVDMGSRGGSSBBGGVVVVG ------------------------CGGVGCCGCVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 51 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 TFM12 Reverse Complement Original Motif CHCCBCCKMCTCCKCM CYYCBBCYYYTCCHCCTYYY CHCCBSCBCCTCCBCCTYYY Direction: Forward Position #: 1 Overlap #: 16 Alignment: CHCCBCCKMCTCCKCM---- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement KKKAGGVGGAGGVGSVGGDG MSGKKRCGCWDCABTGBBCD KKKAGGVGGMSGDGVMGSDGCABTGBBCD Direction: Forward Position #: 10 Overlap #: 11 Alignment: KKKAGGVGGAGGVGSVGGDG--------- ---------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Reverse Complement HGVBCABTGCDSCRVCHCSYCCBCCTYYY TWVHWWWYTTTYTTTTTHTTTVWBH HGVBCABTGCDSCRVCBHVHHHHYHTTYYTTTTHTTTVWBH Direction: Forward Position #: 17 Overlap #: 13 Alignment: HGVBCABTGCDSCRVCHCSYCCBCCTYYY------------ ----------------TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif HGVBCABTGCDSCRVCBHVHHHHYHTTYYTTTTHTTTVWBH BCCGCCCCGCCCCBB HGVBCABTGCDSCGCCCCGCCCCBHTTYYTTTTHTTTVWBH Direction: Forward Position #: 11 Overlap #: 15 Alignment: HGVBCABTGCDSCRVCBHVHHHHYHTTYYTTTTHTTTVWBH ----------BCCGCCCCGCCCCBB---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Reverse Complement Original Motif HDWVAAAHAAAAMKAAHBGGGGCGGGGCGSDGCABTGBBCD RGRAGARRGARRAR HDWVAAAHAAAAMKAAHBGGGGCGRGRMGVDGSAGDRVBCD Direction: Forward Position #: 25 Overlap #: 14 Alignment: HDWVAAAHAAAAMKAAHBGGGGCGGGGCGSDGCABTGBBCD ------------------------RGRAGARRGARRAR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif HDWVAAAHAAAAMKAAHBGGGGCGRGRMGVDGSAGDRVBCD GGMGGRGGCGGVGC HDWVAAAHAAAAMKAAHBGGGGCGRGGMGGRGGMGGRGBCD Direction: Forward Position #: 26 Overlap #: 14 Alignment: HDWVAAAHAAAAMKAAHBGGGGCGRGRMGVDGSAGDRVBCD -------------------------GGMGGRGGCGGVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Reverse Complement HDWVAAAHAAAAMKAAHBGGGGCGRGGMGGRGGMGGRGBCD MSGGGGCGGGGYSG HDWVAAAHAAAAMKAAHBGGGGMGGGGGSGGGGCGGRGBCD Direction: Forward Position #: 23 Overlap #: 14 Alignment: HDWVAAAHAAAAMKAAHBGGGGCGRGGMGGRGGMGGRGBCD ----------------------MSGGGGCGGGGYSG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Reverse Complement HDWVAAAHAAAAMKAAHBGGGGMGGGGGSGGGGCGGRGBCD BBGGGGCGGGGCVD HDWVAAAHAAAAMKAAHBGGGGMGDGGGGGSGGSGSVGBCD Direction: Forward Position #: 25 Overlap #: 14 Alignment: HDWVAAAHAAAAMKAAHBGGGGMGGGGGSGGGGCGGRGBCD ------------------------BBGGGGCGGGGCVD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Reverse Complement HGBCVSCSCCSCCCCCHCRCCCCBHTTYYTTTTHTTTVWBH CCCCCTTGGGCCCC HGBCVSCSCCSCCCCCYHRSSCCCCTTYYTTTTHTTTVWBH Direction: Forward Position #: 12 Overlap #: 14 Alignment: HGBCVSCSCCSCCCCCHCRCCCCBHTTYYTTTTHTTTVWBH -----------CCCCCTTGGGCCCC---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Original Motif HDWVAAAHAAAAMKAAGGGGSSMHMGGGGGSGGSGSVGBCD BBVGCCBVGGCCTV HDWVAAAHAAAAMKAAGGGGSSMHMGGGGGSGSCGVGGCCTV Direction: Forward Position #: 29 Overlap #: 13 Alignment: HDWVAAAHAAAAMKAAGGGGSSMHMGGGGGSGGSGSVGBCD- ----------------------------BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 52 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 TFM11 Original Motif Reverse Complement WTKTTTTTHWTTTTTTBT TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWWBTTTTTDTTTDTTTBWBH Direction: Forward Position #: 6 Overlap #: 18 Alignment: -----WTKTTTTTHWTTTTTTBT-- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Reverse Complement TWVHWWWBTTTTTDTTTDTTTBWBH WAHHTVTTYKAAAAWTTRAT TWVHWWWBTTTTTWWTTDTTTBWHAAWTTRAT Direction: Forward Position #: 13 Overlap #: 13 Alignment: TWVHWWWBTTTTTDTTTDTTTBWBH------- ------------WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TWVHWWWBTTTTTWWTTDTTTBWHAAWTTRAT WWHTTTTTCABAAWTTWA TWVHWWWBTTTTTWWTTDTTTTWDWWYWTAAWTTWA Direction: Forward Position #: 19 Overlap #: 14 Alignment: TWVHWWWBTTTTTWWTTDTTTBWHAAWTTRAT---- ------------------WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Original Motif TWVHWWWBTTTTTWWTTDTTTTWDWWYWTAAWTTWA CYYCBBCYYYTCCHCCTYYY CYYCBBCYYYTCCYHBHBHYBTTTTTWWTTDTTTTWDWWYWTAAWTTWA Direction: Forward Position #: 14 Overlap #: 7 Alignment: -------------TWVHWWWBTTTTTWWTTDTTTTWDWWYWTAAWTTWA CYYCBBCYYYTCCHCCTYYY----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement TWAAWTTAWKWWDWAAAADAAWWAAAAAVMHVHBHMGGAKKMGBBGKMG MSGKKRCGCWDCABTGBBCD TWAAWTTAWKWWDWAAAADAAWWAAAAAVMMVRKBAVGCKKCRBBGBHSD Direction: Forward Position #: 31 Overlap #: 19 Alignment: TWAAWTTAWKWWDWAAAADAAWWAAAAAVMHVHBHMGGAKKMGBBGKMG- ------------------------------MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement HSDBCVBMGRRGCVTVYMVYYBTTTTTWWTTDTTTTWDWWYWTAAWTTWA TWSTTTWAWTTTWT HSDBCVBMGRRGCVTVYMVYYBTTTTTWWTTDTTWBTTTWHWTWWWTTWA Direction: Forward Position #: 34 Overlap #: 14 Alignment: HSDBCVBMGRRGCVTVYMVYYBTTTTTWWTTDTTTTWDWWYWTAAWTTWA ---------------------------------TWSTTTWAWTTTWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Reverse Complement HSDBCVBMGRRGCVTVYMVYYBTTTTTWWTTDTTWBTTTWHWTWWWTTWA TTTDAWATATHATT HSDBCVBMGRRGCVTVYMVYYBTTTTTWWTTDTTTTDWWWTWTWAWTTWA Direction: Forward Position #: 34 Overlap #: 14 Alignment: HSDBCVBMGRRGCVTVYMVYYBTTTTTWWTTDTTWBTTTWHWTWWWTTWA ---------------------------------TTTDAWATATHATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Reverse Complement Original Motif TWAAWTWAWAWWWDAAAADAAWWAAAAAVMMVRKBAVGCKKCRBBGBHSD RGRAGARRGARRAR TWAAWTWAWAWWWDAAAADAAWWAAAAAVMMVRGDAGRVDDMRVDRBHSD Direction: Forward Position #: 33 Overlap #: 14 Alignment: TWAAWTWAWAWWWDAAAADAAWWAAAAAVMMVRKBAVGCKKCRBBGBHSD --------------------------------RGRAGARRGARRAR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Reverse Complement HSDBMDVMYHHVMCTHCKVYYBTTTTTWWTTDTTTTDWWWTWTWAWTTWA WWTAKTTCDKAATT HSDBMDVMYHHVMCTHCKVYYBTTTTTWWTTDTTTTWDTTYWTAATTTWA Direction: Forward Position #: 34 Overlap #: 14 Alignment: HSDBMDVMYHHVMCTHCKVYYBTTTTTWWTTDTTTTDWWWTWTWAWTTWA ---------------------------------WWTAKTTCDKAATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Original Motif TWAAATTAWKAADWAAAADAAWWAAAAAVMMVRGDAGRVDDMRVDRBHSD AAATRWTAAAATCA TWAAATTAWKAADWAAAAAAWRWWAAAATCAVRGDAGRVDDMRVDRBHSD Direction: Forward Position #: 18 Overlap #: 14 Alignment: TWAAATTAWKAADWAAAADAAWWAAAAAVMMVRGDAGRVDDMRVDRBHSD -----------------AAATRWTAAAATCA------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 53 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 TFM13 Reverse Complement Original Motif TWAAWTTVTGAAAAAHWW ATKAAWTTTTRMAABAHHTW ATWAAWTTHTGAAAWAHWWW Direction: Forward Position #: 2 Overlap #: 18 Alignment: -TWAAWTTVTGAAAAAHWW- ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Original Motif ATWAAWTTHTGAAAWAHWWW HDWVAAAHAAAAAMAAAMWWWHBWA ATWAAWTTHWVAAAHAAWWAMAAAMWWWHBWA Direction: Forward Position #: 8 Overlap #: 13 Alignment: ATWAAWTTHTGAAAWAHWWW------------ -------HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement ATWAAWTTHWVAAAHAAWWAMAAAMWWWHBWA ABAAAAAAWHAAAAARAW ATWAAWTTHWVAAAHAAWWDAAAAAAWDHDAAARAW Direction: Forward Position #: 19 Overlap #: 14 Alignment: ATWAAWTTHWVAAAHAAWWAMAAAMWWWHBWA---- ------------------ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif ATWAAWTTHWVAAAHAAWWDAAAAAAWDHDAAARAW DGVBCABTGDWGCGKRRCSR ATWAAWTTHWVAAAHAAWWDAAADRHDHAVDRADRHGKRRCSR Direction: Forward Position #: 24 Overlap #: 13 Alignment: ATWAAWTTHWVAAAHAAWWDAAAAAAWDHDAAARAW------- -----------------------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement MSGKKRCDMDTMDBTDDHKDTTTDWWTTHTTTVWHAAWTTWAT TWSTTTWAWTTTWT MSGKKRCDMDTMDBTDDHKDTTTDWWTTWBTTYWHWWWTWTAT Direction: Forward Position #: 28 Overlap #: 14 Alignment: MSGKKRCDMDTMDBTDDHKDTTTDWWTTHTTTVWHAAWTTWAT ---------------------------TWSTTTWAWTTTWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Original Motif MSGKKRCDMDTMDBTDDHKDTTTDWWTTWBTTYWHWWWTWTAT AATTYDGAARTAWW MSGKKRCDMDTMDBTDDHKDTTTDWWTTWATTYWDAADTAWAT Direction: Forward Position #: 29 Overlap #: 14 Alignment: MSGKKRCDMDTMDBTDDHKDTTTDWWTTWBTTYWHWWWTWTAT ----------------------------AATTYDGAARTAWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif MSGKKRCDMDTMDBTDDHKDTTTDWWTTWATTYWDAADTAWAT AATHATATWTHAAA MSGKKRCDMDTMDBTDDHKDTTTDWWTTAATTHWAWWTHAAAT Direction: Forward Position #: 29 Overlap #: 14 Alignment: MSGKKRCDMDTMDBTDDHKDTTTDWWTTWATTYWDAADTAWAT ----------------------------AATHATATWTHAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Reverse Complement Original Motif ATTTHAWWTWHAATTAAWWDAAADRHDHAVDRADRHGKRYCSR RGRAGARRGARRAR ATTTHAWWTWHAATTAAWWDAAADRHDVRVARARRVRKRHVSR Direction: Forward Position #: 28 Overlap #: 14 Alignment: ATTTHAWWTWHAATTAAWWDAAADRHDHAVDRADRHGKRYCSR ---------------------------RGRAGARRGARRAR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Original Motif Original Motif ATTTHAWWTWHAATTAAWWDAAADRHDVRVARARRVRKRHVSR TTCWTAGATTAWA TTCWTAKATTAWATWHAATTAAWWDAAADRHDVRVARARRVRKRHVSR Direction: Forward Position #: 6 Overlap #: 8 Alignment: -----ATTTHAWWTWHAATTAAWWDAAADRHDVRVARARRVRKRHVSR TTCWTAGATTAWA----------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Reverse Complement Reverse Complement MSVHMYMVMKTMTBMBDHKDTTTDWWTTAATTHWATWTAATYTAWGAA DDTATTATTTDH MSVHMYMVMKTMTBMBDHKDTTTDWWTTAWTTATWWTTWAWYTAWGAA Direction: Forward Position #: 30 Overlap #: 12 Alignment: MSVHMYMVMKTMTBMBDHKDTTTDWWTTAATTHWATWTAATYTAWGAA -----------------------------DDTATTATTTDH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 54 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Pax5 Original Motif Reverse Complement CYYCBBCYYYTCCHCCTYYY MSGKKRCGCWDCABTGBBCD CBSBBVCBCHTCMBYBBBCB Direction: Forward Position #: 1 Overlap #: 20 Alignment: CYYCBBCYYYTCCHCCTYYY MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement CBSBBVCBCHTCMBYBBBCB TWVHWWWYTTTYTTTTTHTTTVWBH CBSBBVCBYDBHHDHBTTYBTTTTTHTTTVWBH Direction: Forward Position #: 9 Overlap #: 12 Alignment: CBSBBVCBCHTCMBYBBBCB------------- --------TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif CBSBBVCBYDBHHDHBTTYBTTTTTHTTTVWBH WTKTTTTTHWTTTTTTBT CBSBBVCBYDBHHDHBTTYHTKTTTTTTTBTDTTTBT Direction: Forward Position #: 20 Overlap #: 14 Alignment: CBSBBVCBYDBHHDHBTTYBTTTTTHTTTVWBH---- -------------------WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif ABAAADAVAAAAAAARAHMAAVHDHDVDKBGVBBSBG RGRGGAGRRGGHGGDG ABAAADAVAAAAAAARAHMAAVHDVGRRGVGVVGSVGGDG Direction: Forward Position #: 25 Overlap #: 13 Alignment: ABAAADAVAAAAAAARAHMAAVHDHDVDKBGVBBSBG--- ------------------------RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement ABAAADAVAAAAAAARAHMAAVHDVGRRGVGVVGSVGGDG BBGGGGCGGGGCGGB ABAAADAVAAAAAAARAHMAAVHDVGRRBVGGGGCGGGGSGGB Direction: Forward Position #: 29 Overlap #: 12 Alignment: ABAAADAVAAAAAAARAHMAAVHDVGRRGVGVVGSVGGDG--- ----------------------------BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Original Motif Original Motif ABAAADAVAAAAAAARAHMAAVHDVGRRBVGGGGCGGGGSGGB RGRAGARRGARRAR ABAAADAVAAAAAAARAHMAAVHDVGRRGVRGRGSGRGGVGGB Direction: Forward Position #: 28 Overlap #: 14 Alignment: ABAAADAVAAAAAAARAHMAAVHDVGRRBVGGGGCGGGGSGGB ---------------------------RGRAGARRGARRAR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Reverse Complement ABAAADAVAAAAAAARAHMAAVHDVGRRGVRGRGSGRGGVGGB MSGGGGCGGGGYSG ABAAADAVAAAAAAARAHMAAVHDVGRRGVRVVGGGGSGGGGBSG Direction: Forward Position #: 32 Overlap #: 12 Alignment: ABAAADAVAAAAAAARAHMAAVHDVGRRGVRGRGSGRGGVGGB-- -------------------------------MSGGGGCGGGGYSG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Reverse Complement ABAAADAVAAAAAAARAHMAAVHDVGRRGVRVVGGGGSGGGGBSG BBGGGGCGGGGCVD ABAAADAVAAAAAAARAHMAAVHDVGRRGVRVVGGGGGSGGGGCVD Direction: Forward Position #: 33 Overlap #: 13 Alignment: ABAAADAVAAAAAAARAHMAAVHDVGRRGVRVVGGGGSGGGGBSG- --------------------------------BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif ABAAADAVAAAAAAARAHMAAVHDVGRRGVRVVGGGGGSGGGGCVD GGMGGRGGCGGVGC ABAAADAVAAAAAAARAHMAAVHDVGRRGVRGGVGGGGGSGGVGSD Direction: Forward Position #: 32 Overlap #: 14 Alignment: ABAAADAVAAAAAAARAHMAAVHDVGRRGVRVVGGGGGSGGGGCVD -------------------------------GGMGGRGGCGGVGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Original Motif ABAAADAVAAAAAAARAHMAAVHDVGRRGVRGGVGGGGGSGGVGSD GGGGCCCAAGGGGG ABAAADAVAAAAAAARAHMAAVHDVGRGGVVVDVGGGGGSGGVGSD Direction: Forward Position #: 26 Overlap #: 14 Alignment: ABAAADAVAAAAAAARAHMAAVHDVGRRGVRGGVGGGGGSGGVGSD -------------------------GGGGCCCAAGGGGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 55 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 TFM11 Reverse Complement Reverse Complement WAHHTVTTYKAAAAWTTRAT TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWAHYTDTTTKWWWWTTTDWTH Direction: Forward Position #: 5 Overlap #: 20 Alignment: ----WAHHTVTTYKAAAAWTTRAT- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TWVHWAHYTDTTTKWWWWTTTDWTH WWHTTTTTCABAAWTTWA TWVHWAHYTDTTTWWWTWTTTVABAAWTTWA Direction: Forward Position #: 14 Overlap #: 12 Alignment: TWVHWAHYTDTTTKWWWWTTTDWTH------ -------------WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Reverse Complement TWAAWTTVTVAAAWAWWWAAADAMHTWHBWA ABAAAAAAWHAAAAARAW TWAAWTTVTVAAAWAWWAVAAAAAAWDHDAAARAW Direction: Forward Position #: 18 Overlap #: 14 Alignment: TWAAWTTVTVAAAWAWWWAAADAMHTWHBWA---- -----------------ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif TWAAWTTVTVAAAWAWWAVAAAAAAWDHDAAARAW DGVBCABTGDWGCGKRRCSR TWAAWTTVTVAAAWAWWAVAAARADHHVDRAAGMRKRRCSR Direction: Forward Position #: 22 Overlap #: 14 Alignment: TWAAWTTVTVAAAWAWWAVAAAAAAWDHDAAARAW------ ---------------------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement MSGKKRKYCTTKDBHDDTKTTTBTWWTWTTTVABAAWTTWA TTTDAWATATHATT MSGKKRKYCTTKDBHDDTKTTTBTWWTTTDWHATAWWDTTA Direction: Forward Position #: 27 Overlap #: 14 Alignment: MSGKKRKYCTTKDBHDDTKTTTBTWWTWTTTVABAAWTTWA --------------------------TTTDAWATATHATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif MSGKKRKYCTTKDBHDDTKTTTBTWWTTTDWHATAWWDTTA AWAAAWTWAAASWA MSGKKRKYCTTKDBHDDTKTTTBTWWWTWWAWWWAAAVWWA Direction: Forward Position #: 27 Overlap #: 14 Alignment: MSGKKRKYCTTKDBHDDTKTTTBTWWTTTDWHATAWWDTTA --------------------------AWAAAWTWAAASWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Reverse Complement MSGKKRKYCTTKDBHDDTKTTTBTWWWTWWAWWWAAAVWWA WWTAKTTCDKAATT MSGKKRKYCTTKDBHDDTKTTTBTWWWTWDWTYWDAATTWA Direction: Forward Position #: 26 Overlap #: 14 Alignment: MSGKKRKYCTTKDBHDDTKTTTBTWWWTWWAWWWAAAVWWA -------------------------WWTAKTTCDKAATT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Reverse Complement TWAATTDWKAWDWAWWWAVAAARADHHVDRAAGMRKRYCSR TWTAATCTAWGAA TWTAAWYTAWGAADWAWWWAVAAARADHHVDRAAGMRKRYCSR Direction: Forward Position #: 3 Overlap #: 11 Alignment: --TWAATTDWKAWDWAWWWAVAAARADHHVDRAAGMRKRYCSR TWTAATCTAWGAA------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Original Motif TWTAAWYTAWGAADWAWWWAVAAARADHHVDRAAGMRKRYCSR ACAAWTRATTTTGA ACAWWTAATTTWGRAADWAWWWAVAAARADHHVDRAAGMRKRYCSR Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---TWTAAWYTAWGAADWAWWWAVAAARADHHVDRAAGMRKRYCSR ACAAWTRATTTTGA-------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Original Motif ACAWWTAATTTWGRAADWAWWWAVAAARADHHVDRAAGMRKRYCSR HDAAATAATAHW ACAWWTAATTTWGRAADWAWWWAVAAARHDAAATAATRHDKRYCSR Direction: Forward Position #: 29 Overlap #: 12 Alignment: ACAWWTAATTTWGRAADWAWWWAVAAARADHHVDRAAGMRKRYCSR ----------------------------HDAAATAATAHW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 56 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 TFM13 Reverse Complement Reverse Complement TWVHWWWYTTTYTTTTTHTTTVWBH WAHHTVTTYKAAAAWTTRAT TWHHTDTTTTWHWWTTTDWTTVWBH Direction: Forward Position #: 1 Overlap #: 20 Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH WAHHTVTTYKAAAAWTTRAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Original Motif TWHHTDTTTTWHWWTTTDWTTVWBH CYYCBBCYYYTCCHCCTYYY CYYCBBCYYYTCYHBYTHYYTTWHWWTTTDWTTVWBH Direction: Forward Position #: 13 Overlap #: 8 Alignment: ------------TWHHTDTTTTWHWWTTTDWTTVWBH CYYCBBCYYYTCCHCCTYYY----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif HDWVAAWDAAAWWHWAAMMHAKBHMGAKKMGBBGKMG DGVBCABTGDWGCGKRRCSR HDWVAAWDAAAWWHWAAMMHAKDDVGMDBHGDDGBVGRRCSR Direction: Forward Position #: 23 Overlap #: 15 Alignment: HDWVAAWDAAAWWHWAAMMHAKBHMGAKKMGBBGKMG----- ----------------------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif MSGKKCVBCDHCHBDRCBHHYTHYYTTWHWWTTTDWTTVWBH WTKTTTTTHWTTTTTTBT MSGKKCVBCDHCHBDRCBHHYTHYYTTTBWTTTTDWTTDTTDBT Direction: Forward Position #: 27 Overlap #: 16 Alignment: MSGKKCVBCDHCHBDRCBHHYTHYYTTWHWWTTTDWTTVWBH-- --------------------------WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif MSGKKCVBCDHCHBDRCBHHYTHYYTTTBWTTTTDWTTDTTDBT WWHTTTTTCABAAWTTWA MSGKKCVBCDHCHBDRCBHHYTHYYTTWWWTTTTWYWTAWWTTWA Direction: Forward Position #: 28 Overlap #: 17 Alignment: MSGKKCVBCDHCHBDRCBHHYTHYYTTTBWTTTTDWTTDTTDBT- ---------------------------WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Reverse Complement MSGKKCVBCDHCHBDRCBHHYTHYYTTWWWTTTTWYWTAWWTTWA TWSTTTWAWTTTWT MSGKKCVBCDHCHBDRCBHHYTHYYTTWWTWHTTTWWTTWTWTWA Direction: Forward Position #: 30 Overlap #: 14 Alignment: MSGKKCVBCDHCHBDRCBHHYTHYYTTWWWTTTTWYWTAWWTTWA -----------------------------TWSTTTWAWTTTWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Reverse Complement Original Motif TWAWAWAAWWAAAHWAWWAAMMHAKDDVGMDBHGDDGBVGRYCSR RGRAGARRGARRAR TWAWAWAAWWAAAHWAWWAAMMHAKDDAGVAGDGRVRVRRRYCSR Direction: Forward Position #: 28 Overlap #: 14 Alignment: TWAWAWAAWWAAAHWAWWAAMMHAKDDVGMDBHGDDGBVGRYCSR ---------------------------RGRAGARRGARRAR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement MSGKKMMVMVMCDCTBCTHHYTHYYTTWWTWHTTTWWTTWTWTWA TTTDAWATATHATT MSGKKMMVMVMCDCTBCTHHYTHYYTTWWTTTTWWWTWTWWWTWA Direction: Forward Position #: 30 Overlap #: 14 Alignment: MSGKKMMVMVMCDCTBCTHHYTHYYTTWWTWHTTTWWTTWTWTWA -----------------------------TTTDAWATATHATT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Original Motif MSGKKMMVMVMCDCTBCTHHYTHYYTTWWTTTTWWWTWTWWWTWA AATTYDGAARTAWW MSGKKMMVMVMCDCTBCTHHYTHYYTTWWTTTWATTTWKAADTAAW Direction: Forward Position #: 33 Overlap #: 13 Alignment: MSGKKMMVMVMCDCTBCTHHYTHYYTTWWTTTTWWWTWTWWWTWA- --------------------------------AATTYDGAARTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Original Motif MSGKKMMVMVMCDCTBCTHHYTHYYTTWWTTTWATTTWKAADTAAW HDAAATAATADD MSGKKMMVMVMCDCTBCTHHYTHYYTTWWTHDAAWTWATAWDTAAW Direction: Forward Position #: 31 Overlap #: 12 Alignment: MSGKKMMVMVMCDCTBCTHHYTHYYTTWWTTTWATTTWKAADTAAW ------------------------------HDAAATAATADD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-20-2016 22:10:51 Runtime: 822.546 seconds MOTIFSIM is written by Ngoc Tam L. Tran