**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.1 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 5 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Phylogenetic tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # DREME_DM230.txt 1 1 MEME_DM230.txt 20 2 PScanChIP_DM230.txt 14 3 RSAT_peak-motifs_DM230.txt 10 4 W-ChIPMotifs_DM230.txt 11 5 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ************************************************************ Combined Motifs for Top Global Significant Motif ID 45 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww TFM11 Reverse Complement Reverse Complement DHTATTTACBD TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWWYTTTYTTTTTATTTAHBH Direction: Forward Position #: 15 Overlap #: 11 Alignment: --------------DHTATTTACBD TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif HVDTAAATAAAAAMAAAMWWWHBWA AATHATATWTHAAA HVDTAAATAAAAAMAAWHAWATHTVAAA Direction: Forward Position #: 15 Overlap #: 11 Alignment: HVDTAAATAAAAAMAAAMWWWHBWA--- --------------AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Reverse Complement TTTBAHATWTHWTTYTTTTTATTTAHBH WWTAKTTCDKAATT TTTBAHAWWTWDTTCTKAATWTTTAHBH Direction: Forward Position #: 8 Overlap #: 14 Alignment: TTTBAHATWTHWTTYTTTTTATTTAHBH -------WWTAKTTCDKAATT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Reverse Complement HVDTAAAWATTRAGAADWAWWTHTVAAA ABAAAAAAWHAAAAARAW HVDTAAAWATTRAGAADWAAWWAWHAAAAARAW Direction: Forward Position #: 16 Overlap #: 13 Alignment: HVDTAAAWATTRAGAADWAWWTHTVAAA----- ---------------ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement HVDTAAAWATTRAGAADWAAWWAWHAAAAARAW TWAAWTTVTGAAAAAHWW HVDTAAAWATTRAGAADWAWWAAWTWAWRAAAWAHWW Direction: Forward Position #: 20 Overlap #: 14 Alignment: HVDTAAAWATTRAGAADWAAWWAWHAAAAARAW---- -------------------TWAAWTTVTGAAAAAHWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Reverse Complement HVDTAAAWATTRAGAADWAWWAAWTWAWRAAAWAHWW WAHHTVTTYKAAAAWTTRAT HVDTAAAWATTRAGAADWAWWWAWHTVWDWDAAAWWWTRAT Direction: Forward Position #: 22 Overlap #: 16 Alignment: HVDTAAAWATTRAGAADWAWWAAWTWAWRAAAWAHWW---- ---------------------WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Reverse Complement HVDTAAAWATTRAGAADWAWWWAWHTVWDWDAAAWWWTRAT AWGKAAWTTTT HVDTAAAWATTRAGAADWAWWWAWHTVWHDKAAATTTTRAT Direction: Forward Position #: 28 Overlap #: 11 Alignment: HVDTAAAWATTRAGAADWAWWWAWHTVWDWDAAAWWWTRAT ---------------------------AWGKAAWTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Reverse Complement HVDTAAAWATTRAGAADWAWWWAWHTVWHDKAAATTTTRAT TWSTTTWAWTTTWT HVDTAAAWATTRAGAADWAWWWAWHTWWVTTWWAWTTTWWT Direction: Forward Position #: 27 Overlap #: 14 Alignment: HVDTAAAWATTRAGAADWAWWWAWHTVWHDKAAATTTTRAT --------------------------TWSTTTWAWTTTWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Original Motif HVDTAAAWATTRAGAADWAWWWAWHTWWVTTWWAWTTTWWT AWTAAATAYAATTT HVDTAAAWATTAWTAAATAYAAWTTTWWVTTWWAWTTTWWT Direction: Forward Position #: 12 Overlap #: 14 Alignment: HVDTAAAWATTRAGAADWAWWWAWHTWWVTTWWAWTTTWWT -----------AWTAAATAYAATTT---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement HVDTAAAWATTAWTAAATAYAAWTTTWWVTTWWAWTTTWWT MSGKKRCGCWDCABTGBBCD MSGKKRCGCWDCABTGHDVDAAAWATTAWTAAATAYAAWTTTWWVTTWWAWTTTWWT Direction: Forward Position #: 17 Overlap #: 4 Alignment: ----------------HVDTAAAWATTAWTAAATAYAAWTTTWWVTTWWAWTTTWWT MSGKKRCGCWDCABTGBBCD------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 24 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Motif 7 Original Motif Original Motif CCCCKCCCCC CSKCCCCGCCCCSY CSKCCCCGCCCCCY Direction: Backward Position #: 2 Overlap #: 10 Alignment: ---CCCCKCCCCC- CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Original Motif CSKCCCCGCCCCCY HVGCCCCGCCCCBB CSGCCCCGCCCCSB Direction: Forward Position #: 1 Overlap #: 14 Alignment: CSKCCCCGCCCCCY HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Reverse Complement VSGGGGCGGGGCSG BBGGGGCGGGGCGGB VBGGGGCGGGGCGGB Direction: Forward Position #: 1 Overlap #: 14 Alignment: VSGGGGCGGGGCSG- BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement BCCGCCCCGCCCCBV GCVCCGCCMCCYCC SCVSCSCCVCCCCCV Direction: Forward Position #: 1 Overlap #: 14 Alignment: BCCGCCCCGCCCCBV GCVCCGCCMCCYCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Reverse Complement VGGGGGVGGSGSVGS KKKAGGDGGAKKMGBBGKMG KKKAGGDGGAKKMGBBGGVGVGGSGSVGS Direction: Forward Position #: 15 Overlap #: 6 Alignment: --------------VGGGGGVGGSGSVGS KKKAGGDGGAKKMGBBGKMG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif KKKAGGDGGAKKMGBBGGVGVGGSGSVGS RGRGGAGRRGGHGGDG KKKAGGDGGAKKMGBBGGRGVRGGGGGVGGDG Direction: Forward Position #: 17 Overlap #: 13 Alignment: KKKAGGDGGAKKMGBBGGVGVGGSGSVGS--- ----------------RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Original Motif KKKAGGDGGAKKMGBBGGRGVRGGGGGVGGDG CGGVGCCGCVGC KKKAGGDGGAKKMGBBGGRGVGGVGSSGSRGS Direction: Forward Position #: 21 Overlap #: 12 Alignment: KKKAGGDGGAKKMGBBGGRGVRGGGGGVGGDG --------------------CGGVGCCGCVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Original Motif Original Motif KKKAGGDGGAKKMGBBGGRGVGGVGSSGSRGS RGRAGARRGARRAR KKKAGGDGGAKKMGBBGGRRGRRGRSVGVRRVR Direction: Forward Position #: 20 Overlap #: 13 Alignment: KKKAGGDGGAKKMGBBGGRGVGGVGSSGSRGS- -------------------RGRAGARRGARRAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Original Motif Reverse Complement KKKAGGDGGAKKMGBBGGRRGRRGRSVGVRRVR CGCGBMGCCG CGSGBAGSCGGAKKMGBBGGRRGRRGRSVGVRRVR Direction: Forward Position #: 3 Overlap #: 8 Alignment: --KKKAGGDGGAKKMGBBGGRRGRRGRSVGVRRVR CGCGBMGCCG------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Reverse Complement CGSGBAGSCGGAKKMGBBGGRRGRRGRSVGVRRVR GBTGCAGGTGB GBTGCASGTGBAGSCGGAKKMGBBGGRRGRRGRSVGVRRVR Direction: Forward Position #: 7 Overlap #: 5 Alignment: ------CGSGBAGSCGGAKKMGBBGGRRGRRGRSVGVRRVR GBTGCAGGTGB------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 32 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ArntAhr csGCCCCGCCCCsc Reverse Complement Original Motif CACGCM HVGCCCCGCCCCBB HVGCCMCGCCCCBB Direction: Backward Position #: 5 Overlap #: 6 Alignment: ----CACGCM---- HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Reverse Complement Original Motif BBGGGGCGYGGCVD GGCGGGGC GGCGGGGCGYGGCVD Direction: Forward Position #: 2 Overlap #: 7 Alignment: -BBGGGGCGYGGCVD GGCGGGGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Reverse Complement Reverse Complement HVGCCMCGCCCCGCC SGGTCACGTGACCS VSGYCACGYSMCSCC Direction: Forward Position #: 1 Overlap #: 14 Alignment: HVGCCMCGCCCCGCC SGGTCACGTGACCS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Original Motif GGSGRSMCGTGKCSV BCCGCCCCGCCCCBB GSSGSCCCGYSCCSB Direction: Forward Position #: 1 Overlap #: 15 Alignment: GGSGRSMCGTGKCSV BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Reverse Complement BSGGSKCGGGSCSSC MSGGGGCGGGGYSG VSGGGGCGGGGCSBC Direction: Forward Position #: 1 Overlap #: 14 Alignment: BSGGSKCGGGSCSSC MSGGGGCGGGGYSG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 Combined Motif Original Motif Original Motif VSGGGGCGGGGCSBC SCGCGCGG VSGGSGCGSGGCSBC Direction: Forward Position #: 4 Overlap #: 8 Alignment: VSGGGGCGGGGCSBC ---SCGCGCGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 Combined Motif Reverse Complement Reverse Complement GBSGCCSCGCSCCSV CGCGBMGCCG GBCGCSSCGCCSCSV Direction: Forward Position #: 3 Overlap #: 10 Alignment: GBSGCCSCGCSCCSV --CGCGBMGCCG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Reverse Complement Original Motif VSGSGGCGSSGCGBC BCACCTGCABC BVASCKGCABCGCGBC Direction: Forward Position #: 2 Overlap #: 10 Alignment: -VSGSGGCGSSGCGBC BCACCTGCABC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Original Motif GBCGCGBTGCRGSTVB GGMGGRGGCGGVGC GSSVSGVKGCGGVGVB Direction: Forward Position #: 2 Overlap #: 14 Alignment: GBCGCGBTGCRGSTVB -GGMGGRGGCGGVGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW1 Original Motif Original Motif GSSVSGVKGCGGVGVB GTCGCG GBCGCGVKGCGGVGVB Direction: Forward Position #: 1 Overlap #: 6 Alignment: GSSVSGVKGCGGVGVB GTCGCG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 1 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 csGCCCCGCCCCsc Original Motif Reverse Complement GGCGGGGC BBGGGGCGGGGCVD BBGGGGCGGGGCVD Direction: Forward Position #: 5 Overlap #: 8 Alignment: ----GGCGGGGC-- BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Reverse Complement BBGGGGCGGGGCVD BBGGGGCGGGGCGGB BBGGGGCGGGGCSGGGGCGGGGCVD Direction: Forward Position #: 12 Overlap #: 4 Alignment: -----------BBGGGGCGGGGCVD BBGGGGCGGGGCGGB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif HVGCCCCGCCCCSGCCCCGCCCCBB CSKCCCCGCCCCSY HVGCCCCGCCCCGCCCCCGCCCCBB Direction: Forward Position #: 6 Overlap #: 14 Alignment: HVGCCCCGCCCCSGCCCCGCCCCBB -----CSKCCCCGCCCCSY------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Original Motif BBGGGGCGGGGGCGGGGCGGGGCVD GGMGGRGGCGGVGC BBGGGGCGGGGGCGGGGSGGGGCGGVGC Direction: Forward Position #: 15 Overlap #: 11 Alignment: BBGGGGCGGGGGCGGGGCGGGGCVD--- --------------GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Reverse Complement Reverse Complement GCVCCGCCCCSCCCCGCCCCCGCCCCBB GCCYCMCCCD GCVCCGCCCSCCCCCCCCHCCGCCCCBB Direction: Forward Position #: 10 Overlap #: 10 Alignment: GCVCCGCCCCSCCCCGCCCCCGCCCCBB ---------GCCYCMCCCD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif GCVCCGCCCSCCCCCCCCHCCGCCCCBB BBVGCCBVGGCCTV GCVCCGCCVSSCCCMGSCCYSGCCCCBB Direction: Forward Position #: 8 Overlap #: 14 Alignment: GCVCCGCCCSCCCCCCCCHCCGCCCCBB -------BBVGCCBVGGCCTV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 Combined Motif Original Motif Reverse Complement GCVCCGCCVSSCCCMGSCCYSGCCCCBB CGCGBMGCCG GCVCCGCCVSGCSBMGSCSYSGCCCCBB Direction: Forward Position #: 10 Overlap #: 10 Alignment: GCVCCGCCVSSCCCMGSCCYSGCCCCBB ---------CGCGBMGCCG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Reverse Complement Original Motif BBGGGGCSMSGSCYBSGCSVGGCGGVGC CGGVGCCGCVGC BBGGGGCSMSGSCYBSGCGGVGCSGVGSC Direction: Forward Position #: 18 Overlap #: 11 Alignment: BBGGGGCSMSGSCYBSGCSVGGCGGVGC- -----------------CGGVGCCGCVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif BBGGGGCSMSGSCYBSGCGGVGCSGVGSC DGVBCABTGDWGCGKRRCSR BBGGGGCSMSGSCYBSGVGGVRCBGVRGCGKRRCSR Direction: Forward Position #: 17 Overlap #: 13 Alignment: BBGGGGCSMSGSCYBSGCGGVGCSGVGSC------- ----------------DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 Combined Motif Reverse Complement Reverse Complement MSGKKRCGCMBCBGMVCCVCSBMGSCSYSGCCCCBB YCGCCCACGCH MSGKKRCGCMBCBGMVYCVCCCASGCVYSGCCCCBB Direction: Forward Position #: 17 Overlap #: 11 Alignment: MSGKKRCGCMBCBGMVCCVCSBMGSCSYSGCCCCBB ----------------YCGCCCACGCH--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Reverse Complement BBGGGGCSMVGCSTGGGVGKVRCBGVRGCGKRYCSR CHCCBCCKMCTCCKCM BBGGGGCSMVGCSTGGGVGKVRCHSMDSCGHVTCCKCM Direction: Forward Position #: 23 Overlap #: 14 Alignment: BBGGGGCSMVGCSTGGGVGKVRCBGVRGCGKRYCSR-- ----------------------CHCCBCCKMCTCCKCM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 46 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 sSGTCACGTGACSs Original Motif Original Motif GTCGCG SGGTCACGTGACCS SGGTCRCGTGACCS Direction: Forward Position #: 3 Overlap #: 6 Alignment: --GTCGCG------ SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Original Motif SGGTCRCGTGACCS HSCACGTGGC HSCACGBGKCRCGTGACCS Direction: Forward Position #: 6 Overlap #: 5 Alignment: -----SGGTCRCGTGACCS HSCACGTGGC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Reverse Complement Original Motif SGGTCACGKGYCBCGTGSD HVGCCCCGCCCCBB VSGYCMCGYSCCBCGTGSD Direction: Forward Position #: 1 Overlap #: 14 Alignment: SGGTCACGKGYCBCGTGSD HVGCCCCGCCCCBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Original Motif Reverse Complement VSGYCMCGYSCCBCGTGSD GCCCCGCC GCCCCGCCMCGYSCCBCGTGSD Direction: Forward Position #: 4 Overlap #: 5 Alignment: ---VSGYCMCGYSCCBCGTGSD GCCCCGCC-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif GCCCCGCCMCGYSCCBCGTGSD BCCGCCCCGCCCCBB GCCCCGCCCCGCCCCBBGTGSD Direction: Forward Position #: 3 Overlap #: 15 Alignment: GCCCCGCCMCGYSCCBCGTGSD --BCCGCCCCGCCCCBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif GCCCCGCCCCGCCCCBBGTGSD CSKCCCCGCCCCSY GCCCCGCCCCGCCCCBBGTGSD Direction: Forward Position #: 4 Overlap #: 14 Alignment: GCCCCGCCCCGCCCCBBGTGSD ---CSKCCCCGCCCCSY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Reverse Complement Original Motif HSCACBBGGGGCGGGGCGGGGC VGCACGTGGH VSCACGYGGSGCGGGGCGGGGC Direction: Forward Position #: 1 Overlap #: 10 Alignment: HSCACBBGGGGCGGGGCGGGGC VGCACGTGGH------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif E2F1 Original Motif Original Motif VSCACGYGGSGCGGGGCGGGGC TTTSGCGC TTTSGCRCGYGGSGCGGGGCGGGGC Direction: Forward Position #: 4 Overlap #: 5 Alignment: ---VSCACGYGGSGCGGGGCGGGGC TTTSGCGC----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement GCCCCGCCCCGCSCCMCGMGCSAAA VAGGCCBBGGCVBB GCCCCRSSCCGCGSCVCGMGCSAAA Direction: Forward Position #: 5 Overlap #: 14 Alignment: GCCCCGCCCCGCSCCMCGMGCSAAA ----VAGGCCBBGGCVBB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement GCCCCRSSCCGCGSCVCGMGCSAAA MSGKKRCGCWDCABTGBBCD GCCCSRBBMCGCDBCMBBVGBCAAA Direction: Forward Position #: 4 Overlap #: 20 Alignment: GCCCCRSSCCGCGSCVCGMGCSAAA ---MSGKKRCGCWDCABTGBBCD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 47 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 csGCCCCGCCCCsc Reverse Complement Original Motif CCGCGCGS HVGCCCCGCCCCBB HCSSCSCGCCCCBB Direction: Forward Position #: 2 Overlap #: 8 Alignment: -CCGCGCGS----- HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Original Motif HCSSCSCGCCCCBB BCCGCCCCGCCCCBB BCCGCCCCGCCCCSSCSCGCCCCBB Direction: Forward Position #: 12 Overlap #: 4 Alignment: -----------HCSSCSCGCCCCBB BCCGCCCCGCCCCBB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif BCCGCCCCGCCCCSSCSCGCCCCBB CSKCCCCGCCCCSY BCCGCCCCGCCCCSBCSCSCCSCCCCSY Direction: Forward Position #: 15 Overlap #: 11 Alignment: BCCGCCCCGCCCCSSCSCGCCCCBB--- --------------CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Combined Motif Original Motif Reverse Complement BCCGCCCCGCCCCSBCSCSCCSCCCCSY GCCACGTGSD BCCGCCCCGCCMCGTSSCSCCSCCCCSY Direction: Forward Position #: 9 Overlap #: 10 Alignment: BCCGCCCCGCCCCSBCSCSCCSCCCCSY --------GCCACGTGSD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Reverse Complement Original Motif MSGGGGSGGSGSSACGRGGCGGGGCGGB VGCACGTGGH MSSRSGBGGBGSSACGRGGCGGGGCGGB Direction: Forward Position #: 1 Overlap #: 10 Alignment: MSGGGGSGGSGSSACGRGGCGGGGCGGB VGCACGTGGH------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFAP2A Combined Motif Reverse Complement Reverse Complement BCCGCCCCGCCMCGTSSCBCCVCSKSSY SCMVBBGGC BCCGCCCCGCCMCSBGGCBCCVCSKSSY Direction: Forward Position #: 10 Overlap #: 9 Alignment: BCCGCCCCGCCMCGTSSCBCCVCSKSSY ---------SCMVBBGGC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Original Motif Original Motif BCCGCCCCGCCMCSBGGCBCCVCSKSSY CCCCKCCCCC BCCGCCCCGCCCCBYSSCSCCVCSKSSY Direction: Forward Position #: 10 Overlap #: 10 Alignment: BCCGCCCCGCCMCSBGGCBCCVCSKSSY ---------CCCCKCCCCC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement BCCGCCCCGCCCCBYSSCSCCVCSKSSY VAGGCCBBGGCVBB BCCGCCCCGCCCCBYSSMGSCCCSKSCBBB Direction: Forward Position #: 17 Overlap #: 12 Alignment: BCCGCCCCGCCCCBYSSCSCCVCSKSSY-- ----------------VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Original Motif Reverse Complement BCCGCCCCGCCCCBYSSMGSCCCSKSCBBB GCCYCMCCCD BCCGCCCCGCCCCVCCCHGSCCCSKSCBBB Direction: Forward Position #: 9 Overlap #: 10 Alignment: BCCGCCCCGCCCCBYSSMGSCCCSKSCBBB --------GCCYCMCCCD------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif MIZF Original Motif Original Motif BCCGCCCCGCCCCVCCCHGSCCCSKSCBBB BAACGTCCGC BHMSSYCCGCCCCVCCCHGSCCCSKSCBBB Direction: Forward Position #: 1 Overlap #: 10 Alignment: BCCGCCCCGCCCCVCCCHGSCCCSKSCBBB BAACGTCCGC-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 29 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIF1AARNT kcACCTGCAgc Reverse Complement Reverse Complement VCACGTBV GBTGCAGGTGB GBTGCASGTBV Direction: Backward Position #: 1 Overlap #: 8 Alignment: ---VCACGTBV GBTGCAGGTGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Reverse Complement GBTGCASGTBV SGGTCACGTGACCS SSKKCACGTGACCS Direction: Forward Position #: 1 Overlap #: 11 Alignment: GBTGCASGTBV--- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 25 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFAP2A TFF11 Reverse Complement Original Motif SCMVBBGGC GGMGGRGGCGGVGC GSMVGVGGCGGVGC Direction: Forward Position #: 1 Overlap #: 9 Alignment: SCMVBBGGC----- GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 Combined Motif Reverse Complement Reverse Complement GCVCCGCCVCVRSC CGCGBMGCCG GCCSCGCCGCCGSC Direction: Forward Position #: 3 Overlap #: 10 Alignment: GCVCCGCCVCVRSC --CGCGBMGCCG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Reverse Complement GCCSCGCCGCCGSC KKKAGGDGGAKKMGBBGKMG KKKAGGDGGAKKMGSCVSCGCCGCCGSC Direction: Forward Position #: 15 Overlap #: 6 Alignment: --------------GCCSCGCCGCCGSC KKKAGGDGGAKKMGBBGKMG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Reverse Complement KKKAGGDGGAKKMGSCVSCGCCGCCGSC GCVGCGGCBCCG KKKAGGDGGAKKMGSCVGCGSCGSCBCCG Direction: Forward Position #: 18 Overlap #: 11 Alignment: KKKAGGDGGAKKMGSCVSCGCCGCCGSC- -----------------GCVGCGGCBCCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif KKKAGGDGGAKKMGSCVGCGSCGSCBCCG RGRGGAGRRGGHGGDG KKKAGGDGGAKKMGSCVGMGGMGGVGSCGGDG Direction: Forward Position #: 17 Overlap #: 13 Alignment: KKKAGGDGGAKKMGSCVGCGSCGSCBCCG--- ----------------RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Original Motif Original Motif KKKAGGDGGAKKMGSCVGMGGMGGVGSCGGDG RGRAGARRGARRAR KKKAGGDGGAKKMGSCVGMRGRRGRGGVRGRRR Direction: Forward Position #: 20 Overlap #: 13 Alignment: KKKAGGDGGAKKMGSCVGMGGMGGVGSCGGDG- -------------------RGRAGARRGARRAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Original Motif MMMCMVCCKCKKCMRCVGSCYYYTCCHCCTYYY BCCGCCCCGCCCCBB MMMCMVCCKCKKCMRCVGSCYCGCCCCSCCCCBB Direction: Forward Position #: 20 Overlap #: 14 Alignment: MMMCMVCCKCKKCMRCVGSCYYYTCCHCCTYYY- -------------------BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif MMMCMVCCKCKKCMRCVGSCYCGCCCCSCCCCBB CSKCCCCGCCCCSY MMMCMVCCKCKKCMRCVGSCYCSBCCCCSCCCCBY Direction: Forward Position #: 22 Overlap #: 13 Alignment: MMMCMVCCKCKKCMRCVGSCYCGCCCCSCCCCBB- ---------------------CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Original Motif MMMCMVCCKCKKCMRCVGSCYCSBCCCCSCCCCBY HVGCCCCGCCCCBB MMMCMVCCKCKKCMRCVGSCYCVGCCCCGCCCCBB Direction: Forward Position #: 22 Overlap #: 14 Alignment: MMMCMVCCKCKKCMRCVGSCYCSBCCCCSCCCCBY ---------------------HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Original Motif MMMCMVCCKCKKCMRCVGSCYCVGCCCCGCCCCBB BCACCTGCABC BMACCTGCMBCKKCMRCVGSCYCVGCCCCGCCCCBB Direction: Forward Position #: 2 Overlap #: 10 Alignment: -MMMCMVCCKCKKCMRCVGSCYCVGCCCCGCCCCBB BCACCTGCABC------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 41 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Motif 3 Original Motif Original Motif HDAAATAATADD AWAAAWTWAAASWA AWAAAATAAWAVWA Direction: Forward Position #: 2 Overlap #: 12 Alignment: -HDAAATAATADD- AWAAAWTWAAASWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Original Motif Reverse Complement AWAAAATAAWAVWA ABAAAAAAWHAAAAARAW ABAAAAAAWHAAAAWAAAATAAWAVWA Direction: Forward Position #: 14 Overlap #: 5 Alignment: -------------AWAAAATAAWAVWA ABAAAAAAWHAAAAARAW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Reverse Complement TWVTWTTATTTTWTTTTHWTTTTTTBT TWVHWWWYTTTYTTTTTHTTTVWBH TWVTWTTATTTTWTTDHDWTTTTTTYTTTTHTTTVWBH Direction: Forward Position #: 14 Overlap #: 14 Alignment: TWVTWTTATTTTWTTTTHWTTTTTTBT----------- -------------TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif TWVTWTTATTTTWTTDHDWTTTTTTYTTTTHTTTVWBH AATHATATWTHAAA TWVTWTTATTTTWTTDHDWTTTTTWDTWWTATTTVAHA Direction: Forward Position #: 25 Overlap #: 14 Alignment: TWVTWTTATTTTWTTDHDWTTTTTTYTTTTHTTTVWBH ------------------------AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif THTVAAATAWWADWAAAAAWDHDAAWAAAATAAWAVWA ATKAAWTTTTRMAABAHHTW THTVAAATAWWADWAAAAAWDHAWDWAAWWTWAWAVDAHHTW Direction: Forward Position #: 23 Overlap #: 16 Alignment: THTVAAATAWWADWAAAAAWDHDAAWAAAATAAWAVWA---- ----------------------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Original Motif THTVAAATAWWADWAAAAAWDHAWDWAAWWTWAWAVDAHHTW AWTAAATAYAATTT THTVAAWTAAAWAYAATWWWDHAWDWAAWWTWAWAVDAHHTW Direction: Forward Position #: 6 Overlap #: 14 Alignment: THTVAAATAWWADWAAAAAWDHAWDWAAWWTWAWAVDAHHTW -----AWTAAATAYAATTT----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif THTVAAWTAAAWAYAATWWWDHAWDWAAWWTWAWAVDAHHTW WWHTTTTTCABAAWTTWA THTVAAWTAAAWAYAATWWWDHAWDWWWWTTTWWMABAAHTWWA Direction: Forward Position #: 27 Overlap #: 16 Alignment: THTVAAWTAAAWAYAATWWWDHAWDWAAWWTWAWAVDAHHTW-- --------------------------WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Reverse Complement THTVAAWTAAAWAYAATWWWDHAWDWWWWTTTWWMABAAHTWWA TCAAAATKAWTTGT TCWAAATTAWWTRTAATWWWDHAWDWWWWTTTWWMABAAHTWWA Direction: Forward Position #: 1 Overlap #: 14 Alignment: THTVAAWTAAAWAYAATWWWDHAWDWWWWTTTWWMABAAHTWWA TCAAAATKAWTTGT------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Reverse Complement TCWAAATTAWWTRTAATWWWDHAWDWWWWTTTWWMABAAHTWWA WWTAKTTCDKAATT TCWAAATTAWWTRTAATWWWDHAWDWWWWTTWDTYMDDAATTWA Direction: Forward Position #: 29 Overlap #: 14 Alignment: TCWAAATTAWWTRTAATWWWDHAWDWWWWTTTWWMABAAHTWWA ----------------------------WWTAKTTCDKAATT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif TCWAAATTAWWTRTAATWWWDHAWDWWWWTTWDTYMDDAATTWA AAATRWTAAAATCA AAATRTYAAAATYAWWTRTAATWWWDHAWDWWWWTTWDTYMDDAATTWA Direction: Forward Position #: 6 Overlap #: 9 Alignment: -----TCWAAATTAWWTRTAATWWWDHAWDWWWWTTWDTYMDDAATTWA AAATRWTAAAATCA----------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 37 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Motif 3 Reverse Complement Reverse Complement WHTATTATTTDH TWSTTTWAWTTTWT TWVTWTTATTTTHT Direction: Backward Position #: 2 Overlap #: 12 Alignment: -WHTATTATTTDH- TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement TWVTWTTATTTTHT TWVHWWWYTTTYTTTTTHTTTVWBH TWVTWTWWWTTTTTYTTTTTHTTTVWBH Direction: Forward Position #: 4 Overlap #: 11 Alignment: TWVTWTTATTTTHT-------------- ---TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Reverse Complement HDWVAAAHAAAAAMAAAAAWWWAWABWA ABAAAAAAWHAAAAARAW HDWVAAAHAAAAAMAADAAAWAAWHVAAAARAW Direction: Forward Position #: 16 Overlap #: 13 Alignment: HDWVAAAHAAAAAMAAAAAWWWAWABWA----- ---------------ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement WTKTTTTBHWTTWTTTDTTYTTTTTHTTTVWBH TTTDAWATATHATT WTKTTTTBHWTTWTTTDTTYTTTDWWWTWHWDWT Direction: Forward Position #: 21 Overlap #: 13 Alignment: WTKTTTTBHWTTWTTTDTTYTTTTTHTTTVWBH- --------------------TTTDAWATATHATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif WTKTTTTBHWTTWTTTDTTYTTTDWWWTWHWDWT ATKAAWTTTTRMAABAHHTW WTKTTTTBHWTTWTTTDTTHTTWWWWTTTDHAHTAHHTW Direction: Forward Position #: 20 Overlap #: 15 Alignment: WTKTTTTBHWTTWTTTDTTYTTTDWWWTWHWDWT----- -------------------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement WTKTTTTBHWTTWTTTDTTHTTWWWWTTTDHAHTAHHTW AAATTKTATTTAWT WTKTTWAATTTTATTTAWTHTTWWWWTTTDHAHTAHHTW Direction: Forward Position #: 6 Overlap #: 14 Alignment: WTKTTTTBHWTTWTTTDTTHTTWWWWTTTDHAHTAHHTW -----AAATTKTATTTAWT-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif WTKTTWAATTTTATTTAWTHTTWWWWTTTDHAHTAHHTW WWHTTTTTCABAAWTTWA WTKTTWAATTTTATTTAWTHTTWWWWTTTDWMATAAHTWWA Direction: Forward Position #: 24 Overlap #: 16 Alignment: WTKTTWAATTTTATTTAWTHTTWWWWTTTDHAHTAHHTW-- -----------------------WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Reverse Complement WTKTTWAATTTTATTTAWTHTTWWWWTTTDWMATAAHTWWA TCAAAATKAWTTGT TCAWAWTDAWTTGTATTTAWTHTTWWWWTTTDWMATAAHTWWA Direction: Forward Position #: 3 Overlap #: 12 Alignment: --WTKTTWAATTTTATTTAWTHTTWWWWTTTDWMATAAHTWWA TCAAAATKAWTTGT----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Reverse Complement TCAWAWTDAWTTGTATTTAWTHTTWWWWTTTDWMATAAHTWWA WWTAKTTCDKAATT TCAWAWTDAWTTGTATTTAWTHTTWWWWTTWDTYMTDAATTWA Direction: Forward Position #: 28 Overlap #: 14 Alignment: TCAWAWTDAWTTGTATTTAWTHTTWWWWTTTDWMATAAHTWWA ---------------------------WWTAKTTCDKAATT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Reverse Complement TWAATTDARMADWAAWWWWAAHAWTAAATACAAWTDAWTWTGA TWTAATCTAWGAA TWTAAWYTAWGAADWAAWWWWAAHAWTAAATACAAWTDAWTWTGA Direction: Forward Position #: 3 Overlap #: 11 Alignment: --TWAATTDARMADWAAWWWWAAHAWTAAATACAAWTDAWTWTGA TWTAATCTAWGAA-------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 11-20-2016 22:10:51 Runtime: 822.546 seconds MOTIFSIM is written by Ngoc Tam L. 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