MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.2

INPUT

Input Parameters
Number of files: 5
Number of top significant motifs: 10
Number of best matches: 10
Similarity cutoff >= 0.75
Matching motif database: UniProbe Mus Musculus
Motif tree: Yes
Combined similar motifs: Yes
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
MEME_DM05.txt 46 1
MEME-ChIP_DM05.txt 4 2
PScanChIP_DM05.txt 16 3
RSAT_peak-motifs_DM05.txt 17 4
W-ChIPMotifs_DM05.txt 11 5

RESULTS

Top 10 Significant Motifs - Global Matching (Highest to Lowest)

Dataset #: 5 Motif ID: 84 Motif name: TFW3

Original motif     Consensus sequence: GCACTG Reverse complement motif     Consensus sequence: CAGTGC

Best Matches for Top Significant Motif ID 84 (Highest to Lowest)

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0

Alignment:
GGAGCACTGTGACACCACA
----------GCACTG---

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.000794289

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
------CAGTGC-------------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.00482436

Alignment:
TGGAGCACTGTGACAVCACAGTGG
----GCACTG--------------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0201914

Alignment:
AGTGCTCCACTGTGDTG
-----GCACTG------

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.0205497

Alignment:
ABCACAGTGGAGCACTG
----CAGTGC-------

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 13
Number of overlap: 6
Similarity score: 0.0290883

Alignment:
ACTGTGACACCACAGTGGAGCACT
------------CAGTGC------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 15
Number of overlap: 6
Similarity score: 0.039883

Alignment:
TTCAGCACCATGGACAGCKCC
-CAGTGC--------------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 65
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0447224

Alignment:
CCAGYYHVADCCRG
-------CAGTGC-

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0459818

Alignment:
GAKAGKTGGCTCWG
GCACTG--------

Original motif     Consensus sequence: CWGAGCCAYCTYTC Reverse complement motif     Consensus sequence: GAKAGKTGGCTCWG

Dataset #: 4
Motif ID: 75
Motif name: wwCCAmAGTCmt
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0587933

Alignment:
VDGACTRTGGDD
-----GCACTG-

Original motif     Consensus sequence: DDCCAMAGTCHB Reverse complement motif     Consensus sequence: VDGACTRTGGDD

Dataset #: 5 Motif ID: 85 Motif name: TFW1

Original motif     Consensus sequence: TTGCGCAA Reverse complement motif     Consensus sequence: TTGCGCAA

Best Matches for Top Significant Motif ID 85 (Highest to Lowest)

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0195312

Alignment:
TTYGGAAAGCAG
----TTGCGCAA

Original motif     Consensus sequence: CTGCTTTCCMAA Reverse complement motif     Consensus sequence: TTYGGAAAGCAG

Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0276442

Alignment:
AKGYYCAAAGRTCA
TTGCGCAA------

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0277567

Alignment:
BTRGGDCARAGGKCA
------TTGCGCAA-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 1
Motif ID: 28
Motif name: Motif 28
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0328125

Alignment:
TTTACTAAAT
-TTGCGCAA-

Original motif     Consensus sequence: ATTTAGTAAA Reverse complement motif     Consensus sequence: TTTACTAAAT

Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0336914

Alignment:
CAHCACAGTGGAGCACT
-TTGCGCAA--------

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 17
Number of overlap: 8
Similarity score: 0.0338471

Alignment:
TGGAGCACTGTGACAVCACAGTGG
TTGCGCAA----------------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.034375

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
---------------TTGCGCAA-

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0354167

Alignment:
CAGTGCTCCACTGTGBT
-------TTGCGCAA--

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0407242

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
---------------TTGCGCAA--

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 1
Motif ID: 41
Motif name: Motif 41
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0421875

Alignment:
TTTCCTCCA
-TTGCGCAA

Original motif     Consensus sequence: TGGAGGAAA Reverse complement motif     Consensus sequence: TTTCCTCCA

Dataset #: 3 Motif ID: 55 Motif name: ZEB1

Original motif     Consensus sequence: CACCTD Reverse complement motif     Consensus sequence: HAGGTG

Best Matches for Top Significant Motif ID 55 (Highest to Lowest)

Dataset #: 2
Motif ID: 47
Motif name: Motif 47
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0

Alignment:
YGCCACCTDSTGGY
---CACCTD-----

Original motif     Consensus sequence: YGCCACCTDSTGGY Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.00902841

Alignment:
CWGAGCCAYCTYTC
------CACCTD--

Original motif     Consensus sequence: CWGAGCCAYCTYTC Reverse complement motif     Consensus sequence: GAKAGKTGGCTCWG

Dataset #: 1
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.0285279

Alignment:
TATKCTAAACCTAT
-CACCTD-------

Original motif     Consensus sequence: ATAGGTTTAGYATA Reverse complement motif     Consensus sequence: TATKCTAAACCTAT

Dataset #: 1
Motif ID: 20
Motif name: Motif 20
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0346255

Alignment:
TCCTCCTGGAA
--CACCTD---

Original motif     Consensus sequence: TCCTCCTGGAA Reverse complement motif     Consensus sequence: TTCCAGGAGGA

Dataset #: 1
Motif ID: 12
Motif name: Motif 12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0376742

Alignment:
ACAACACATTT
----CACCTD-

Original motif     Consensus sequence: ACAACACATTT Reverse complement motif     Consensus sequence: AAATGTGTTGT

Dataset #: 1
Motif ID: 34
Motif name: Motif 34
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0397068

Alignment:
AAAGATGA
-HAGGTG-

Original motif     Consensus sequence: AAAGATGA Reverse complement motif     Consensus sequence: TCATCTTT

Dataset #: 1
Motif ID: 22
Motif name: Motif 22
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0397068

Alignment:
TTTATGGTGAGCAT
-----HAGGTG---

Original motif     Consensus sequence: TTTATGGTGAGCAT Reverse complement motif     Consensus sequence: ATGCTCACCATAAA

Dataset #: 1
Motif ID: 17
Motif name: Motif 17
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0458043

Alignment:
CTTCTGACCTC
-----CACCTD

Original motif     Consensus sequence: CTTCTGACCTC Reverse complement motif     Consensus sequence: GAGGTCAGAAG

Dataset #: 5
Motif ID: 92
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0461561

Alignment:
CAMACACACACAYDCACACA
--------CACCTD------

Original motif     Consensus sequence: CAMACACACACAYDCACACA Reverse complement motif     Consensus sequence: TGTGTGDKTGTGTGTGTRTG

Dataset #: 5
Motif ID: 89
Motif name: TFM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0467843

Alignment:
CACACACACACWCACACA
------CACCTD------

Original motif     Consensus sequence: CACACACACACWCACACA Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG

Dataset #: 1 Motif ID: 3 Motif name: Motif 3

Original motif     Consensus sequence: HCAGRRVACASAG Reverse complement motif     Consensus sequence: CTSTGTBKMCTGH

Best Matches for Top Significant Motif ID 3 (Highest to Lowest)

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 13
Similarity score: 0.00926418

Alignment:
RAGKGMAGVRRGSRCASAGV
------HCAGRRVACASAG-

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 13
Similarity score: 0.0328703

Alignment:
VDBHMAGGTCACCCTGACCY
---HCAGRRVACASAG----

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0400966

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
----------HCAGRRVACASAG--

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0435274

Alignment:
GCAGAKGSAGGABDGHDG
--HCAGRRVACASAG---

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 13
Similarity score: 0.0448341

Alignment:
YDRCCASYAGRKGGCRSYV
------HCAGRRVACASAG

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 13
Similarity score: 0.045698

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
---CTSTGTBKMCTGH--------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0457253

Alignment:
BTRGGDCARAGGKCA
HCAGRRVACASAG--

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 65
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0477557

Alignment:
CKGGDTBDMMCTGG
CTSTGTBKMCTGH-

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.0478998

Alignment:
WHAATTAAARAARAAAAAAA
----HCAGRRVACASAG---

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.048132

Alignment:
HVCDBBDBCAGCAG
-HCAGRRVACASAG

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 2 Motif ID: 48 Motif name: Motif 48

Original motif     Consensus sequence: GCARRGGSAGS Reverse complement motif     Consensus sequence: SCTSCCKMTGC

Best Matches for Top Significant Motif ID 48 (Highest to Lowest)

Dataset #: 1
Motif ID: 1
Motif name: Motif 1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0

Alignment:
GCAGAGGSAKG
GCARRGGSAGS

Original motif     Consensus sequence: CYTSCCTCTGC Reverse complement motif     Consensus sequence: GCAGAGGSAKG

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.000952693

Alignment:
GCAGAKGSAGGABDGHDG
GCARRGGSAGS-------

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.033658

Alignment:
YDRCCASYAGRKGGCRSYV
------GCARRGGSAGS--

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0410341

Alignment:
CTGCTGBDBBDGBD
--SCTSCCKMTGC-

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0422459

Alignment:
RAGKGMAGVRRGSRCASAGV
----GCARRGGSAGS-----

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 3
Motif ID: 65
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0533531

Alignment:
CCAGYYHVADCCRG
SCTSCCKMTGC---

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0578944

Alignment:
GGYGCTGTCCATGGTGCTGAA
---SCTSCCKMTGC-------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0620615

Alignment:
VDBHMAGGTCACCCTGACCY
--GCARRGGSAGS-------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 1
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0627554

Alignment:
HCAGRRVACASAG
GCARRGGSAGS--

Original motif     Consensus sequence: HCAGRRVACASAG Reverse complement motif     Consensus sequence: CTSTGTBKMCTGH

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0646979

Alignment:
VHRGGTCABDBTGMCCTB
---SCTSCCKMTGC----

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 5 Motif ID: 87 Motif name: TFF1

Original motif     Consensus sequence: AGGACAAAGAVV Reverse complement motif     Consensus sequence: VVTCTTTGTCCT

Best Matches for Top Significant Motif ID 87 (Highest to Lowest)

Dataset #: 3
Motif ID: 51
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0111472

Alignment:
TGMYCTTTGBCCK
-VVTCTTTGTCCT

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0210867

Alignment:
BTRGGDCARAGGKCA
--AGGACAAAGAVV-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.0351633

Alignment:
BAGGYCABHBTGACCKHV
----VVTCTTTGTCCT--

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 12
Similarity score: 0.039773

Alignment:
VDBHMAGGTCACCCTGACCY
VVTCTTTGTCCT--------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0472374

Alignment:
AKGYYCAAAGRTCA
-AGGACAAAGAVV-

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0472884

Alignment:
GTTGACCTTTGACCTTT
---VVTCTTTGTCCT--

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 12
Similarity score: 0.0530556

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
-------AGGACAAAGAVV------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 13
Number of overlap: 12
Similarity score: 0.0539204

Alignment:
TGGAGCACTGTGACAVCACAGTGG
------------AGGACAAAGAVV

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 12
Similarity score: 0.0558379

Alignment:
TTCAGCACCATGGACAGCKCC
---AGGACAAAGAVV------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 12
Similarity score: 0.0609269

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
------VVTCTTTGTCCT------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 1 Motif ID: 37 Motif name: Motif 37

Original motif     Consensus sequence: ACTTTGG Reverse complement motif     Consensus sequence: CCAAAGT

Best Matches for Top Significant Motif ID 37 (Highest to Lowest)

Dataset #: 4
Motif ID: 69
Motif name: atactttggc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0

Alignment:
ATACTTTGGC
--ACTTTGG-

Original motif     Consensus sequence: ATACTTTGGC Reverse complement motif     Consensus sequence: GCCAAAGTAT

Dataset #: 4
Motif ID: 75
Motif name: wwCCAmAGTCmt
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.0275974

Alignment:
DDCCAMAGTCHB
--CCAAAGT---

Original motif     Consensus sequence: DDCCAMAGTCHB Reverse complement motif     Consensus sequence: VDGACTRTGGDD

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 7
Similarity score: 0.056841

Alignment:
ACTGTGACACCACAGTGGAGCACT
---------CCAAAGT--------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0597098

Alignment:
ACTGTGGTGTCACART
ACTTTGG---------

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 7
Similarity score: 0.061942

Alignment:
AGTGCTCCACTGTGDTG
--------ACTTTGG--

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0625

Alignment:
ABCACAGTGGAGCACTG
-CCAAAGT---------

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0686813

Alignment:
TGAMCTTTGMMCYT
---ACTTTGG----

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0714286

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
-ACTTTGG-----------------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0714286

Alignment:
TGGAGCACTGTGACAVCACAGTGG
---------------CCAAAGT--

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0728571

Alignment:
GTTGACCTTTGACCTTT
-----ACTTTGG-----

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 2 Motif ID: 50 Motif name: Motif 50

Original motif     Consensus sequence: GGAAM Reverse complement motif     Consensus sequence: YTTCC

Best Matches for Top Significant Motif ID 50 (Highest to Lowest)

Dataset #: 1
Motif ID: 41
Motif name: Motif 41
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 5
Similarity score: 0.01875

Alignment:
TTTCCTCCA
YTTCC----

Original motif     Consensus sequence: TGGAGGAAA Reverse complement motif     Consensus sequence: TTTCCTCCA

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 5
Similarity score: 0.01875

Alignment:
CTGCTTTCCMAA
---YTTCC----

Original motif     Consensus sequence: CTGCTTTCCMAA Reverse complement motif     Consensus sequence: TTYGGAAAGCAG

Dataset #: 1
Motif ID: 43
Motif name: Motif 43
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 5
Similarity score: 0.04375

Alignment:
AAKGAAAGGCA
--GGAAM----

Original motif     Consensus sequence: AAKGAAAGGCA Reverse complement motif     Consensus sequence: TGCCTTTCYTT

Dataset #: 1
Motif ID: 44
Motif name: Motif 44
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 5
Similarity score: 0.05625

Alignment:
TTCTTYCATT
--YTTCC---

Original motif     Consensus sequence: AATGKAAGAA Reverse complement motif     Consensus sequence: TTCTTYCATT

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 5
Similarity score: 0.06875

Alignment:
AACATATTTTCA
YTTCC-------

Original motif     Consensus sequence: AACATATTTTCA Reverse complement motif     Consensus sequence: TGAAAATATGTT

Dataset #: 1
Motif ID: 8
Motif name: Motif 8
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.06875

Alignment:
TGAAAATSCTT
-GGAAM-----

Original motif     Consensus sequence: TGAAAATSCTT Reverse complement motif     Consensus sequence: AAGSATTTTCA

Dataset #: 1
Motif ID: 28
Motif name: Motif 28
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.06875

Alignment:
TTTACTAAAT
YTTCC-----

Original motif     Consensus sequence: ATTTAGTAAA Reverse complement motif     Consensus sequence: TTTACTAAAT

Dataset #: 1
Motif ID: 19
Motif name: Motif 19
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 5
Similarity score: 0.06875

Alignment:
AGAGAAAG
--GGAAM-

Original motif     Consensus sequence: AGAGAAAG Reverse complement motif     Consensus sequence: CTTTCTCT

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.0747947

Alignment:
GGYGCTGTCCATGGTGCTGAA
-----YTTCC-----------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.075

Alignment:
ATGTWTTCATTMAT
-----YTTCC----

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 3 Motif ID: 61 Motif name: NR4A2

Original motif     Consensus sequence: AAGGTCAC Reverse complement motif     Consensus sequence: GTGACCTT

Best Matches for Top Significant Motif ID 61 (Highest to Lowest)

Dataset #: 1
Motif ID: 17
Motif name: Motif 17
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0393171

Alignment:
CTTCTGACCTC
GTGACCTT---

Original motif     Consensus sequence: CTTCTGACCTC Reverse complement motif     Consensus sequence: GAGGTCAGAAG

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.040519

Alignment:
AAAGRTMAAACTA
-AAGGTCAC----

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1
Motif ID: 24
Motif name: Motif 24
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0539119

Alignment:
TTWATGWCTTT
---GTGACCTT

Original motif     Consensus sequence: AAAGWCATWAA Reverse complement motif     Consensus sequence: TTWATGWCTTT

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0557243

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
------AAGGTCAC-----------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 1
Motif ID: 35
Motif name: Motif 35
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0566591

Alignment:
AGATGYTCTTG
-GTGACCTT--

Original motif     Consensus sequence: AGATGYTCTTG Reverse complement motif     Consensus sequence: CAAGAKCATCT

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 8
Similarity score: 0.0584971

Alignment:
RAGKGMAGVRRGSRCASAGV
---------AAGGTCAC---

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.060729

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
-------AAGGTCAC---------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0645146

Alignment:
ACTGTGGTGTCACART
-----AAGGTCAC---

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Dataset #: 1
Motif ID: 22
Motif name: Motif 22
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0664462

Alignment:
ATGCTCACCATAAA
------AAGGTCAC

Original motif     Consensus sequence: TTTATGGTGAGCAT Reverse complement motif     Consensus sequence: ATGCTCACCATAAA

Dataset #: 1
Motif ID: 18
Motif name: Motif 18
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0674765

Alignment:
GCTGGACTTTG
-GTGACCTT--

Original motif     Consensus sequence: CAAAGTCCAGC Reverse complement motif     Consensus sequence: GCTGGACTTTG

Dataset #: 4 Motif ID: 79 Motif name: cCGCGGrCACG

Original motif     Consensus sequence: CCGCGGRCACG Reverse complement motif     Consensus sequence: CGTGKCCGCGG

Best Matches for Top Significant Motif ID 79 (Highest to Lowest)

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0478408

Alignment:
HVCDBBDBCAGCAG
---CGTGKCCGCGG

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0484441

Alignment:
TTCAGCACCATGGACAGCKCC
-------CCGCGGRCACG---

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0486581

Alignment:
MGGTCAGGGTGACCTRDBHV
-------CGTGKCCGCGG--

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 11
Similarity score: 0.0588663

Alignment:
YDRCCASYAGRKGGCRSYV
-------CCGCGGRCACG-

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 1
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0597806

Alignment:
HCAGRRVACASAG
-CCGCGGRCACG-

Original motif     Consensus sequence: HCAGRRVACASAG Reverse complement motif     Consensus sequence: CTSTGTBKMCTGH

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0624268

Alignment:
GTGTGTGTGTGTGT
-CGTGKCCGCGG--

Original motif     Consensus sequence: ACACACACACACAC Reverse complement motif     Consensus sequence: GTGTGTGTGTGTGT

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0625015

Alignment:
RAGKGMAGVRRGSRCASAGV
-----CCGCGGRCACG----

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 5
Motif ID: 89
Motif name: TFM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0628056

Alignment:
CACACACACACWCACACA
-----CCGCGGRCACG--

Original motif     Consensus sequence: CACACACACACWCACACA Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0629476

Alignment:
TGRCCTKTGHCCKAB
---CGTGKCCGCGG-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 5
Motif ID: 92
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0634175

Alignment:
CAMACACACACAYDCACACA
-------CCGCGGRCACG--

Original motif     Consensus sequence: CAMACACACACAYDCACACA Reverse complement motif     Consensus sequence: TGTGTGDKTGTGTGTGTRTG


Significant Motifs - Global and Local Matching (Highest to Lowest)

Dataset #: 3 Motif ID: 55 Motif name: ZEB1

Original motif     Consensus sequence: CACCTD Reverse complement motif     Consensus sequence: HAGGTG

Best Matches for Significant Motif ID 55 (Highest to Lowest)

Dataset #: 2
Motif ID: 47
Motif name: Motif 47
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0

Alignment:
YGCCACCTDSTGGY
---CACCTD-----

Original motif     Consensus sequence: YGCCACCTDSTGGY Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.00902841

Alignment:
CWGAGCCAYCTYTC
------CACCTD--

Original motif     Consensus sequence: CWGAGCCAYCTYTC Reverse complement motif     Consensus sequence: GAKAGKTGGCTCWG

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 6
Similarity score: 0.0118423

Alignment:
YDRCCASYAGRKGGCRSYV
-------HAGGTG------

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 3
Motif ID: 62
Motif name: RORA_1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0187312

Alignment:
TGACCTDVWT
-CACCTD---

Original motif     Consensus sequence: AWVDAGGTCA Reverse complement motif     Consensus sequence: TGACCTDVWT

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0189156

Alignment:
GGYGCTGTCCATGGTGCTGAA
----------HAGGTG-----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 54
Motif name: Esrrb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0248883

Alignment:
VBBYCAAGGTCA
-HAGGTG-----

Original motif     Consensus sequence: VBBYCAAGGTCA Reverse complement motif     Consensus sequence: TGACCTTGMBBB

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0278775

Alignment:
GTTGACCTTTGACCTTT
----------CACCTD-

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 1
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.0285279

Alignment:
TATKCTAAACCTAT
-CACCTD-------

Original motif     Consensus sequence: ATAGGTTTAGYATA Reverse complement motif     Consensus sequence: TATKCTAAACCTAT

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0310859

Alignment:
TGRCCTKTGHCCKAB
-CACCTD--------

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 61
Motif name: NR4A2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0334919

Alignment:
GTGACCTT
--CACCTD

Original motif     Consensus sequence: AAGGTCAC Reverse complement motif     Consensus sequence: GTGACCTT

Dataset #: 5 Motif ID: 84 Motif name: TFW3

Original motif     Consensus sequence: GCACTG Reverse complement motif     Consensus sequence: CAGTGC

Best Matches for Significant Motif ID 84 (Highest to Lowest)

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0

Alignment:
GGAGCACTGTGACACCACA
----------GCACTG---

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.000794289

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
-------------GCACTG------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.00482436

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
--------------CAGTGC----

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0201914

Alignment:
CAHCACAGTGGAGCACT
------CAGTGC-----

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0205497

Alignment:
CAGTGCTCCACTGTGBT
-------GCACTG----

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 13
Number of overlap: 6
Similarity score: 0.0290883

Alignment:
ACTGTGACACCACAGTGGAGCACT
------------CAGTGC------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 15
Number of overlap: 6
Similarity score: 0.039883

Alignment:
TTCAGCACCATGGACAGCKCC
-CAGTGC--------------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 65
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0447224

Alignment:
CCAGYYHVADCCRG
-------CAGTGC-

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0459818

Alignment:
GAKAGKTGGCTCWG
GCACTG--------

Original motif     Consensus sequence: CWGAGCCAYCTYTC Reverse complement motif     Consensus sequence: GAKAGKTGGCTCWG

Dataset #: 4
Motif ID: 75
Motif name: wwCCAmAGTCmt
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0587933

Alignment:
VDGACTRTGGDD
-----GCACTG-

Original motif     Consensus sequence: DDCCAMAGTCHB Reverse complement motif     Consensus sequence: VDGACTRTGGDD

Dataset #: 5 Motif ID: 85 Motif name: TFW1

Original motif     Consensus sequence: TTGCGCAA Reverse complement motif     Consensus sequence: TTGCGCAA

Best Matches for Significant Motif ID 85 (Highest to Lowest)

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0195312

Alignment:
TTYGGAAAGCAG
----TTGCGCAA

Original motif     Consensus sequence: CTGCTTTCCMAA Reverse complement motif     Consensus sequence: TTYGGAAAGCAG

Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0276442

Alignment:
AKGYYCAAAGRTCA
TTGCGCAA------

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0277567

Alignment:
BTRGGDCARAGGKCA
------TTGCGCAA-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 1
Motif ID: 28
Motif name: Motif 28
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0328125

Alignment:
TTTACTAAAT
-TTGCGCAA-

Original motif     Consensus sequence: ATTTAGTAAA Reverse complement motif     Consensus sequence: TTTACTAAAT

Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0336914

Alignment:
CAHCACAGTGGAGCACT
-TTGCGCAA--------

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 17
Number of overlap: 8
Similarity score: 0.0338471

Alignment:
TGGAGCACTGTGACAVCACAGTGG
TTGCGCAA----------------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.034375

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
---------------TTGCGCAA-

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0354167

Alignment:
CAGTGCTCCACTGTGBT
-------TTGCGCAA--

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0359375

Alignment:
KTTTTTTKTTTTTTDAAB
---------TTGCGCAA-

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0407242

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
---------------TTGCGCAA--

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 4 Motif ID: 83 Motif name: srACyCCGAyr

Original motif     Consensus sequence: SRACYCCGAYR Reverse complement motif     Consensus sequence: KKTCGGKGTKS

Best Matches for Significant Motif ID 83 (Highest to Lowest)

Dataset #: 5
Motif ID: 92
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 11
Similarity score: 0.0337509

Alignment:
TGTGTGDKTGTGTGTGTRTG
--KKTCGGKGTKS-------

Original motif     Consensus sequence: CAMACACACACAYDCACACA Reverse complement motif     Consensus sequence: TGTGTGDKTGTGTGTGTRTG

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0342809

Alignment:
MGGTCAGGGTGACCTRDBHV
-KKTCGGKGTKS--------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 5
Motif ID: 89
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0348124

Alignment:
TGTGTGWGTGTGTGTGTG
------KKTCGGKGTKS-

Original motif     Consensus sequence: CACACACACACWCACACA Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0372475

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
---------KKTCGGKGTKS----

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0379796

Alignment:
BAGGYCABHBTGACCKHV
---SRACYCCGAYR----

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.0381944

Alignment:
GGAGCACTGTGACACCACA
-----SRACYCCGAYR---

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 1
Motif ID: 6
Motif name: Motif 6
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.039412

Alignment:
TGTGTSWGTBTSTG
--KKTCGGKGTKS-

Original motif     Consensus sequence: CASABACWSACACA Reverse complement motif     Consensus sequence: TGTGTSWGTBTSTG

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 11
Similarity score: 0.0397727

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
--------SRACYCCGAYR------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.0402801

Alignment:
GGYGCTGTCCATGGTGCTGAA
------KKTCGGKGTKS----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0438762

Alignment:
GTGTGTGTGTGTGT
-KKTCGGKGTKS--

Original motif     Consensus sequence: ACACACACACACAC Reverse complement motif     Consensus sequence: GTGTGTGTGTGTGT

Dataset #: 5 Motif ID: 87 Motif name: TFF1

Original motif     Consensus sequence: AGGACAAAGAVV Reverse complement motif     Consensus sequence: VVTCTTTGTCCT

Best Matches for Significant Motif ID 87 (Highest to Lowest)

Dataset #: 3
Motif ID: 51
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0111472

Alignment:
TGMYCTTTGBCCK
-VVTCTTTGTCCT

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0210867

Alignment:
BTRGGDCARAGGKCA
--AGGACAAAGAVV-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.0351633

Alignment:
BAGGYCABHBTGACCKHV
----VVTCTTTGTCCT--

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 12
Similarity score: 0.039773

Alignment:
VDBHMAGGTCACCCTGACCY
VVTCTTTGTCCT--------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 12
Similarity score: 0.0408272

Alignment:
RAGKGMAGVRRGSRCASAGV
-AGGACAAAGAVV-------

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0472374

Alignment:
AKGYYCAAAGRTCA
-AGGACAAAGAVV-

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0472884

Alignment:
GTTGACCTTTGACCTTT
---VVTCTTTGTCCT--

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 12
Similarity score: 0.0530556

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
-------AGGACAAAGAVV------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 13
Number of overlap: 12
Similarity score: 0.0539204

Alignment:
TGGAGCACTGTGACAVCACAGTGG
------------AGGACAAAGAVV

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 12
Similarity score: 0.0558379

Alignment:
TTCAGCACCATGGACAGCKCC
---AGGACAAAGAVV------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 1 Motif ID: 3 Motif name: Motif 3

Original motif     Consensus sequence: HCAGRRVACASAG Reverse complement motif     Consensus sequence: CTSTGTBKMCTGH

Best Matches for Significant Motif ID 3 (Highest to Lowest)

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 13
Similarity score: 0.00926418

Alignment:
RAGKGMAGVRRGSRCASAGV
------HCAGRRVACASAG-

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 13
Similarity score: 0.0328703

Alignment:
VDBHMAGGTCACCCTGACCY
---HCAGRRVACASAG----

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0400966

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
----------HCAGRRVACASAG--

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0435274

Alignment:
GCAGAKGSAGGABDGHDG
--HCAGRRVACASAG---

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 13
Similarity score: 0.0448341

Alignment:
YDRCCASYAGRKGGCRSYV
------HCAGRRVACASAG

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 13
Similarity score: 0.045698

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
---CTSTGTBKMCTGH--------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0457253

Alignment:
BTRGGDCARAGGKCA
HCAGRRVACASAG--

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 65
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0477557

Alignment:
CKGGDTBDMMCTGG
CTSTGTBKMCTGH-

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.0478998

Alignment:
WHAATTAAARAARAAAAAAA
----HCAGRRVACASAG---

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.048132

Alignment:
HVCDBBDBCAGCAG
-HCAGRRVACASAG

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 3 Motif ID: 61 Motif name: NR4A2

Original motif     Consensus sequence: AAGGTCAC Reverse complement motif     Consensus sequence: GTGACCTT

Best Matches for Significant Motif ID 61 (Highest to Lowest)

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0167759

Alignment:
AAAGGTCAAAGGTCAAC
-AAGGTCAC--------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0195235

Alignment:
VDBHMAGGTCACCCTGACCY
----AAGGTCAC--------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0198372

Alignment:
VHRGGTCABDBTGMCCTB
-AAGGTCAC---------

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 1
Motif ID: 17
Motif name: Motif 17
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0393171

Alignment:
CTTCTGACCTC
GTGACCTT---

Original motif     Consensus sequence: CTTCTGACCTC Reverse complement motif     Consensus sequence: GAGGTCAGAAG

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.040519

Alignment:
AAAGRTMAAACTA
-AAGGTCAC----

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0495607

Alignment:
BTRGGDCARAGGKCA
-AAGGTCAC------

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 1
Motif ID: 24
Motif name: Motif 24
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0539119

Alignment:
TTWATGWCTTT
---GTGACCTT

Original motif     Consensus sequence: AAAGWCATWAA Reverse complement motif     Consensus sequence: TTWATGWCTTT

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0557243

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
------AAGGTCAC-----------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0564874

Alignment:
AKGYYCAAAGRTCA
------AAGGTCAC

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 1
Motif ID: 35
Motif name: Motif 35
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0566591

Alignment:
AGATGYTCTTG
-GTGACCTT--

Original motif     Consensus sequence: AGATGYTCTTG Reverse complement motif     Consensus sequence: CAAGAKCATCT

Dataset #: 2 Motif ID: 48 Motif name: Motif 48

Original motif     Consensus sequence: GCARRGGSAGS Reverse complement motif     Consensus sequence: SCTSCCKMTGC

Best Matches for Significant Motif ID 48 (Highest to Lowest)

Dataset #: 1
Motif ID: 1
Motif name: Motif 1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0

Alignment:
GCAGAGGSAKG
GCARRGGSAGS

Original motif     Consensus sequence: CYTSCCTCTGC Reverse complement motif     Consensus sequence: GCAGAGGSAKG

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.000952693

Alignment:
GCAGAKGSAGGABDGHDG
GCARRGGSAGS-------

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.033658

Alignment:
YDRCCASYAGRKGGCRSYV
------GCARRGGSAGS--

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0410341

Alignment:
CTGCTGBDBBDGBD
--SCTSCCKMTGC-

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0422459

Alignment:
RAGKGMAGVRRGSRCASAGV
----GCARRGGSAGS-----

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 3
Motif ID: 65
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0533531

Alignment:
CCAGYYHVADCCRG
SCTSCCKMTGC---

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0578944

Alignment:
GGYGCTGTCCATGGTGCTGAA
---SCTSCCKMTGC-------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0620615

Alignment:
VDBHMAGGTCACCCTGACCY
--GCARRGGSAGS-------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 1
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0627554

Alignment:
HCAGRRVACASAG
GCARRGGSAGS--

Original motif     Consensus sequence: HCAGRRVACASAG Reverse complement motif     Consensus sequence: CTSTGTBKMCTGH

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0646979

Alignment:
VHRGGTCABDBTGMCCTB
---SCTSCCKMTGC----

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 4 Motif ID: 78 Motif name: ssGCkTGCssk

Original motif     Consensus sequence: SSGCKTGCSSK Reverse complement motif     Consensus sequence: YSSGCAYGCSS

Best Matches for Significant Motif ID 78 (Highest to Lowest)

Dataset #: 4
Motif ID: 82
Motif name: gCGCGCsCgsG
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0230178

Alignment:
GCGCGCSCGCG
SSGCKTGCSSK

Original motif     Consensus sequence: GCGCGCSCGCG Reverse complement motif     Consensus sequence: CGCGSGCGCGC

Dataset #: 4
Motif ID: 74
Motif name: ssCCCCGCSssk
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.036087

Alignment:
BBSGGCGGGGBS
-YSSGCAYGCSS

Original motif     Consensus sequence: SBCCCCGCCSBB Reverse complement motif     Consensus sequence: BBSGGCGGGGBS

Dataset #: 4
Motif ID: 68
Motif name: sscCCCGCGcs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0375477

Alignment:
SBCGCGGGGSB
YSSGCAYGCSS

Original motif     Consensus sequence: BSCCCCGCGBS Reverse complement motif     Consensus sequence: SBCGCGGGGSB

Dataset #: 4
Motif ID: 79
Motif name: cCGCGGrCACG
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0461039

Alignment:
CCGCGGRCACG
SSGCKTGCSSK

Original motif     Consensus sequence: CCGCGGRCACG Reverse complement motif     Consensus sequence: CGTGKCCGCGG

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0529221

Alignment:
CTGCTTTCCMAA
SSGCKTGCSSK-

Original motif     Consensus sequence: CTGCTTTCCMAA Reverse complement motif     Consensus sequence: TTYGGAAAGCAG

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 11
Similarity score: 0.0533963

Alignment:
YDRCCASYAGRKGGCRSYV
-------SSGCKTGCSSK-

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 3
Motif ID: 54
Motif name: Esrrb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0543224

Alignment:
VBBYCAAGGTCA
-YSSGCAYGCSS

Original motif     Consensus sequence: VBBYCAAGGTCA Reverse complement motif     Consensus sequence: TGACCTTGMBBB

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0563598

Alignment:
VHRGGTCABDBTGMCCTB
-----YSSGCAYGCSS--

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 11
Similarity score: 0.0593846

Alignment:
TTCAGCACCATGGACAGCKCC
-YSSGCAYGCSS---------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0598714

Alignment:
BTRGGDCARAGGKCA
--YSSGCAYGCSS--

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 4 Motif ID: 79 Motif name: cCGCGGrCACG

Original motif     Consensus sequence: CCGCGGRCACG Reverse complement motif     Consensus sequence: CGTGKCCGCGG

Best Matches for Significant Motif ID 79 (Highest to Lowest)

Dataset #: 4
Motif ID: 82
Motif name: gCGCGCsCgsG
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.010473

Alignment:
GCGCGCSCGCG
CCGCGGRCACG

Original motif     Consensus sequence: GCGCGCSCGCG Reverse complement motif     Consensus sequence: CGCGSGCGCGC

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0478408

Alignment:
HVCDBBDBCAGCAG
---CGTGKCCGCGG

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0484441

Alignment:
TTCAGCACCATGGACAGCKCC
-------CCGCGGRCACG---

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0486581

Alignment:
MGGTCAGGGTGACCTRDBHV
-------CGTGKCCGCGG--

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4
Motif ID: 78
Motif name: ssGCkTGCssk
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0503056

Alignment:
SSGCKTGCSSK
CCGCGGRCACG

Original motif     Consensus sequence: SSGCKTGCSSK Reverse complement motif     Consensus sequence: YSSGCAYGCSS

Dataset #: 4
Motif ID: 74
Motif name: ssCCCCGCSssk
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.055777

Alignment:
BBSGGCGGGGBS
CGTGKCCGCGG-

Original motif     Consensus sequence: SBCCCCGCCSBB Reverse complement motif     Consensus sequence: BBSGGCGGGGBS

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0588663

Alignment:
YDRCCASYAGRKGGCRSYV
-------CCGCGGRCACG-

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 1
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0597806

Alignment:
HCAGRRVACASAG
-CCGCGGRCACG-

Original motif     Consensus sequence: HCAGRRVACASAG Reverse complement motif     Consensus sequence: CTSTGTBKMCTGH

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0624268

Alignment:
GTGTGTGTGTGTGT
-CGTGKCCGCGG--

Original motif     Consensus sequence: ACACACACACACAC Reverse complement motif     Consensus sequence: GTGTGTGTGTGTGT

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0625015

Alignment:
RAGKGMAGVRRGSRCASAGV
-----CCGCGGRCACG----

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK


Best Matches for Each Motif (Highest to Lowest)

Dataset #: 1 Motif ID: 1 Motif name: Motif 1

Original motif     Consensus sequence: CYTSCCTCTGC Reverse complement motif     Consensus sequence: GCAGAGGSAKG

Best Matches for Motif ID 1 (Highest to Lowest)

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 11
Similarity score: 0

Alignment:
CHHCHBTCCTSCYTCTGC
-------CYTSCCTCTGC

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 2
Motif ID: 48
Motif name: Motif 48
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0204179

Alignment:
GCARRGGSAGS
GCAGAGGSAKG

Original motif     Consensus sequence: GCARRGGSAGS Reverse complement motif     Consensus sequence: SCTSCCKMTGC

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0606594

Alignment:
CTGCTGBDBBDGBD
--CYTSCCTCTGC-

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0635403

Alignment:
RAGKGMAGVRRGSRCASAGV
----GCAGAGGSAKG-----

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0656459

Alignment:
YDRCCASYAGRKGGCRSYV
------GCAGAGGSAKG--

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0782887

Alignment:
GGYGCTGTCCATGGTGCTGAA
---CYTSCCTCTGC-------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0788385

Alignment:
MGGTCAGGGTGACCTRDBHV
--------CYTSCCTCTGC-

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0823596

Alignment:
TGRCCTKTGHCCKAB
---CYTSCCTCTGC-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 65
Motif name: Tcfcp2l1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0826758

Alignment:
CCAGYYHVADCCRG
CYTSCCTCTGC---

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Dataset #: 2
Motif ID: 47
Motif name: Motif 47
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0840726

Alignment:
YGCCACCTDSTGGY
--CYTSCCTCTGC-

Original motif     Consensus sequence: YGCCACCTDSTGGY Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK

Dataset #: 4
Motif ID: 74
Motif name: ssCCCCGCSssk
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0843055

Alignment:
BBSGGCGGGGBS
-GCAGAGGSAKG

Original motif     Consensus sequence: SBCCCCGCCSBB Reverse complement motif     Consensus sequence: BBSGGCGGGGBS

Dataset #: 1 Motif ID: 2 Motif name: Motif 2

Original motif     Consensus sequence: ACACACACACACAC Reverse complement motif     Consensus sequence: GTGTGTGTGTGTGT

Best Matches for Motif ID 2 (Highest to Lowest)

Dataset #: 5
Motif ID: 89
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0

Alignment:
TGTGTGWGTGTGTGTGTG
-GTGTGTGTGTGTGT---

Original motif     Consensus sequence: CACACACACACWCACACA Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG

Dataset #: 5
Motif ID: 92
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.00332777

Alignment:
TGTGTGDKTGTGTGTGTRTG
-GTGTGTGTGTGTGT-----

Original motif     Consensus sequence: CAMACACACACAYDCACACA Reverse complement motif     Consensus sequence: TGTGTGDKTGTGTGTGTRTG

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0819161

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
-GTGTGTGTGTGTGT----------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.082111

Alignment:
KTTTTTTKTTTTTTDAAB
-GTGTGTGTGTGTGT---

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 1
Motif ID: 6
Motif name: Motif 6
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.531086

Alignment:
TGTGTSWGTBTSTG-
-GTGTGTGTGTGTGT

Original motif     Consensus sequence: CASABACWSACACA Reverse complement motif     Consensus sequence: TGTGTSWGTBTSTG

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 13
Similarity score: 0.576988

Alignment:
-TTTTTTTKTTKTTTAATTHW
GTGTGTGTGTGTGT-------

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.579965

Alignment:
-TTTRKTTTHTTTTH
GTGTGTGTGTGTGT-

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 1.5772

Alignment:
CTGCTGBDBBDGBD---
---GTGTGTGTGTGTGT

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 5
Motif ID: 87
Motif name: TFF1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 1.57782

Alignment:
AGGACAAAGAVV---
-ACACACACACACAC

Original motif     Consensus sequence: AGGACAAAGAVV Reverse complement motif     Consensus sequence: VVTCTTTGTCCT

Dataset #: 4
Motif ID: 83
Motif name: srACyCCGAyr
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 1.58018

Alignment:
---KKTCGGKGTKS
GTGTGTGTGTGTGT

Original motif     Consensus sequence: SRACYCCGAYR Reverse complement motif     Consensus sequence: KKTCGGKGTKS

Dataset #: 1 Motif ID: 3 Motif name: Motif 3

Original motif     Consensus sequence: HCAGRRVACASAG Reverse complement motif     Consensus sequence: CTSTGTBKMCTGH

Best Matches for Motif ID 3 (Highest to Lowest)

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 13
Similarity score: 0.00926418

Alignment:
RAGKGMAGVRRGSRCASAGV
------HCAGRRVACASAG-

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 13
Similarity score: 0.0328703

Alignment:
VDBHMAGGTCACCCTGACCY
---HCAGRRVACASAG----

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0400966

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
----------HCAGRRVACASAG--

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0435274

Alignment:
GCAGAKGSAGGABDGHDG
--HCAGRRVACASAG---

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 13
Similarity score: 0.0448341

Alignment:
YDRCCASYAGRKGGCRSYV
------HCAGRRVACASAG

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 13
Similarity score: 0.045698

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
---CTSTGTBKMCTGH--------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0457253

Alignment:
BTRGGDCARAGGKCA
HCAGRRVACASAG--

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 65
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0477557

Alignment:
CKGGDTBDMMCTGG
CTSTGTBKMCTGH-

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.0478998

Alignment:
WHAATTAAARAARAAAAAAA
----HCAGRRVACASAG---

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.048132

Alignment:
HVCDBBDBCAGCAG
-HCAGRRVACASAG

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 1 Motif ID: 4 Motif name: Motif 4

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Best Matches for Motif ID 4 (Highest to Lowest)

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 14
Similarity score: 0.0333546

Alignment:
WHAATTAAARAARAAAAAAA
-----HAAAAHAAARMAAA-

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0408482

Alignment:
BTTHAAAAAAYAAAAAAR
---HAAAAHAAARMAAA-

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0486607

Alignment:
AAAAAAAAAAAAAT
HAAAAHAAARMAAA

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0540179

Alignment:
TTTAATGTYTTTWA
TTTRKTTTHTTTTH

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 5
Motif ID: 92
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 14
Similarity score: 0.0882898

Alignment:
TGTGTGDKTGTGTGTGTRTG
--TTTRKTTTHTTTTH----

Original motif     Consensus sequence: CAMACACACACAYDCACACA Reverse complement motif     Consensus sequence: TGTGTGDKTGTGTGTGTRTG

Dataset #: 5
Motif ID: 89
Motif name: TFM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0933036

Alignment:
CACACACACACWCACACA
HAAAAHAAARMAAA----

Original motif     Consensus sequence: CACACACACACWCACACA Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG

Dataset #: 1
Motif ID: 6
Motif name: Motif 6
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0942815

Alignment:
CASABACWSACACA
HAAAAHAAARMAAA

Original motif     Consensus sequence: CASABACWSACACA Reverse complement motif     Consensus sequence: TGTGTSWGTBTSTG

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.096284

Alignment:
RAGKGMAGVRRGSRCASAGV
----HAAAAHAAARMAAA--

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.563221

Alignment:
-TAASTCTWTTTTAA
TTTRKTTTHTTTTH-

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.572837

Alignment:
AAAGRTMAAACTA-
HAAAAHAAARMAAA

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1 Motif ID: 5 Motif name: Motif 5

Original motif     Consensus sequence: CWGAGCCAYCTYTC Reverse complement motif     Consensus sequence: GAKAGKTGGCTCWG

Best Matches for Motif ID 5 (Highest to Lowest)

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0474988

Alignment:
YDRCCASYAGRKGGCRSYV
-----GAKAGKTGGCTCWG

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 14
Similarity score: 0.0554531

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
---GAKAGKTGGCTCWG-------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0576317

Alignment:
VCTSTGKSCMKBCTRCYCTK
---CWGAGCCAYCTYTC---

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0576632

Alignment:
ACTGTGACACCACAGTGGAGCACT
-CWGAGCCAYCTYTC---------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0578361

Alignment:
AMTGTGACACCACAGT
-CWGAGCCAYCTYTC-

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.065312

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
---------CWGAGCCAYCTYTC--

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0658518

Alignment:
VHRGGTCABDBTGMCCTB
CWGAGCCAYCTYTC----

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0671359

Alignment:
MGGTCAGGGTGACCTRDBHV
----CWGAGCCAYCTYTC--

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 13
Similarity score: 0.538291

Alignment:
GGAGCACTGTGACACCACA-
------CWGAGCCAYCTYTC

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 3
Motif ID: 65
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.560622

Alignment:
-CKGGDTBDMMCTGG
GAKAGKTGGCTCWG-

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Dataset #: 1 Motif ID: 6 Motif name: Motif 6

Original motif     Consensus sequence: CASABACWSACACA Reverse complement motif     Consensus sequence: TGTGTSWGTBTSTG

Best Matches for Motif ID 6 (Highest to Lowest)

Dataset #: 5
Motif ID: 92
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0383879

Alignment:
TGTGTGDKTGTGTGTGTRTG
TGTGTSWGTBTSTG------

Original motif     Consensus sequence: CAMACACACACAYDCACACA Reverse complement motif     Consensus sequence: TGTGTGDKTGTGTGTGTRTG

Dataset #: 5
Motif ID: 89
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0411352

Alignment:
TGTGTGWGTGTGTGTGTG
TGTGTSWGTBTSTG----

Original motif     Consensus sequence: CACACACACACWCACACA Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 14
Similarity score: 0.0803592

Alignment:
GGYGCTGTCCATGGTGCTGAA
-----TGTGTSWGTBTSTG--

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0865284

Alignment:
VHRGGTCABDBTGMCCTB
-TGTGTSWGTBTSTG---

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0874787

Alignment:
TGTGGTGTCACAGTGCTCC
---TGTGTSWGTBTSTG--

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 14
Similarity score: 0.0913053

Alignment:
TTTTTTTKTTKTTTAATTHW
-TGTGTSWGTBTSTG-----

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0930634

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
-------TGTGTSWGTBTSTG---

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0933886

Alignment:
HAAAAHAAARMAAA
CASABACWSACACA

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0935906

Alignment:
KTTTTTTKTTTTTTDAAB
TGTGTSWGTBTSTG----

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 11
Number of overlap: 14
Similarity score: 0.0939701

Alignment:
ACTGTGACACCACAGTGGAGCACT
----------CASABACWSACACA

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 1 Motif ID: 7 Motif name: Motif 7

Original motif     Consensus sequence: AAAATKCTATT Reverse complement motif     Consensus sequence: AATAGYATTTT

Best Matches for Motif ID 7 (Highest to Lowest)

Dataset #: 1
Motif ID: 13
Motif name: Motif 13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0795455

Alignment:
AAATAKATWTT
AAAATKCTATT

Original motif     Consensus sequence: AAWATRTATTT Reverse complement motif     Consensus sequence: AAATAKATWTT

Dataset #: 1
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0795455

Alignment:
AATCTGTTATT
AAAATKCTATT

Original motif     Consensus sequence: AATAACAGATT Reverse complement motif     Consensus sequence: AATCTGTTATT

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0909091

Alignment:
TAASTCTWTTTTAA
-AATAGYATTTT--

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.102273

Alignment:
TWAAAKACATTAAA
AAAATKCTATT---

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.102273

Alignment:
TAGTTTYAKCTTT
-AATAGYATTTT-

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1
Motif ID: 12
Motif name: Motif 12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.102273

Alignment:
AAATGTGTTGT
AATAGYATTTT

Original motif     Consensus sequence: ACAACACATTT Reverse complement motif     Consensus sequence: AAATGTGTTGT

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.102273

Alignment:
TGAAAATATGTT
-AAAATKCTATT

Original motif     Consensus sequence: AACATATTTTCA Reverse complement motif     Consensus sequence: TGAAAATATGTT

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.102273

Alignment:
ATTTTTTTTTTTTT
AATAGYATTTT---

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.113636

Alignment:
AAAMATTGTTT
AAAATKCTATT

Original motif     Consensus sequence: AAAMATTGTTT Reverse complement motif     Consensus sequence: AAACAATYTTT

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.113636

Alignment:
AAMATGTTTMAA
AAAATKCTATT-

Original motif     Consensus sequence: AAMATGTTTMAA Reverse complement motif     Consensus sequence: TTYAAACATYTT

Dataset #: 1 Motif ID: 8 Motif name: Motif 8

Original motif     Consensus sequence: TGAAAATSCTT Reverse complement motif     Consensus sequence: AAGSATTTTCA

Best Matches for Motif ID 8 (Highest to Lowest)

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0681818

Alignment:
TGAAAATATGTT
TGAAAATSCTT-

Original motif     Consensus sequence: AACATATTTTCA Reverse complement motif     Consensus sequence: TGAAAATATGTT

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0909091

Alignment:
TTTAATGTYTTTWA
---AAGSATTTTCA

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.102273

Alignment:
AAMATGTTTMAA
AAGSATTTTCA-

Original motif     Consensus sequence: AAMATGTTTMAA Reverse complement motif     Consensus sequence: TTYAAACATYTT

Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.102273

Alignment:
AAACAATYTTT
TGAAAATSCTT

Original motif     Consensus sequence: AAAMATTGTTT Reverse complement motif     Consensus sequence: AAACAATYTTT

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.111179

Alignment:
TGGAGCACTGTGACAVCACAGTGG
--AAGSATTTTCA-----------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 11
Similarity score: 0.113005

Alignment:
TGTGGTGTCACAGTGCTCC
-------TGAAAATSCTT-

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 1
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.113636

Alignment:
ATAGGTTTAGYATA
-AAGSATTTTCA--

Original motif     Consensus sequence: ATAGGTTTAGYATA Reverse complement motif     Consensus sequence: TATKCTAAACCTAT

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.113636

Alignment:
TTAAAAWAGASTTA
-TGAAAATSCTT--

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 1
Motif ID: 43
Motif name: Motif 43
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.113636

Alignment:
TGCCTTTCYTT
TGAAAATSCTT

Original motif     Consensus sequence: AAKGAAAGGCA Reverse complement motif     Consensus sequence: TGCCTTTCYTT

Dataset #: 1
Motif ID: 24
Motif name: Motif 24
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.125

Alignment:
TTWATGWCTTT
TGAAAATSCTT

Original motif     Consensus sequence: AAAGWCATWAA Reverse complement motif     Consensus sequence: TTWATGWCTTT

Dataset #: 1 Motif ID: 9 Motif name: Motif 9

Original motif     Consensus sequence: AACATATTTTCA Reverse complement motif     Consensus sequence: TGAAAATATGTT

Best Matches for Motif ID 9 (Highest to Lowest)

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0729167

Alignment:
AAMATGTTTMAA
AACATATTTTCA

Original motif     Consensus sequence: AAMATGTTTMAA Reverse complement motif     Consensus sequence: TTYAAACATYTT

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.09375

Alignment:
TAASTCTWTTTTAA
--AACATATTTTCA

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.104167

Alignment:
TWAAAKACATTAAA
-AACATATTTTCA-

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 12
Similarity score: 0.120305

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
--------AACATATTTTCA----

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 5
Motif ID: 89
Motif name: TFM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 12
Similarity score: 0.12128

Alignment:
CACACACACACWCACACA
--AACATATTTTCA----

Original motif     Consensus sequence: CACACACACACWCACACA Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG

Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.12207

Alignment:
AMTGTGACACCACAGT
----TGAAAATATGTT

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 12
Similarity score: 0.122466

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
--AACATATTTTCA----------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 5
Motif ID: 92
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.123397

Alignment:
CAMACACACACAYDCACACA
----AACATATTTTCA----

Original motif     Consensus sequence: CAMACACACACAYDCACACA Reverse complement motif     Consensus sequence: TGTGTGDKTGTGTGTGTRTG

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.124008

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
------------TGAAAATATGTT-

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.125

Alignment:
AAAAAAAAAAAAAT
--TGAAAATATGTT

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1 Motif ID: 10 Motif name: Motif 10

Original motif     Consensus sequence: AAAMATTGTTT Reverse complement motif     Consensus sequence: AAACAATYTTT

Best Matches for Motif ID 10 (Highest to Lowest)

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0700758

Alignment:
TTAAAAWAGASTTA
---AAAMATTGTTT

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 1
Motif ID: 13
Motif name: Motif 13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0700758

Alignment:
AAWATRTATTT
AAAMATTGTTT

Original motif     Consensus sequence: AAWATRTATTT Reverse complement motif     Consensus sequence: AAATAKATWTT

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0814394

Alignment:
TGAAAATATGTT
AAAMATTGTTT-

Original motif     Consensus sequence: AACATATTTTCA Reverse complement motif     Consensus sequence: TGAAAATATGTT

Dataset #: 1
Motif ID: 8
Motif name: Motif 8
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0814394

Alignment:
AAGSATTTTCA
AAAMATTGTTT

Original motif     Consensus sequence: TGAAAATSCTT Reverse complement motif     Consensus sequence: AAGSATTTTCA

Dataset #: 1
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0814394

Alignment:
AATAACAGATT
AAAMATTGTTT

Original motif     Consensus sequence: AATAACAGATT Reverse complement motif     Consensus sequence: AATCTGTTATT

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.092803

Alignment:
TTTAATGTYTTTWA
--AAAMATTGTTT-

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.092803

Alignment:
AAAAAAAAAAAAAT
---AAACAATYTTT

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.092803

Alignment:
AAAATKCTATT
AAAMATTGTTT

Original motif     Consensus sequence: AAAATKCTATT Reverse complement motif     Consensus sequence: AATAGYATTTT

Dataset #: 1
Motif ID: 29
Motif name: Motif 29
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.092803

Alignment:
ATTTATTGCTA
AAAMATTGTTT

Original motif     Consensus sequence: ATTTATTGCTA Reverse complement motif     Consensus sequence: TAGCAATAAAT

Dataset #: 1
Motif ID: 12
Motif name: Motif 12
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.092803

Alignment:
AAATGTGTTGT
AAAMATTGTTT

Original motif     Consensus sequence: ACAACACATTT Reverse complement motif     Consensus sequence: AAATGTGTTGT

Dataset #: 1 Motif ID: 11 Motif name: Motif 11

Original motif     Consensus sequence: AAMATGTTTMAA Reverse complement motif     Consensus sequence: TTYAAACATYTT

Best Matches for Motif ID 11 (Highest to Lowest)

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0479167

Alignment:
AACATATTTTCA
AAMATGTTTMAA

Original motif     Consensus sequence: AACATATTTTCA Reverse complement motif     Consensus sequence: TGAAAATATGTT

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.06875

Alignment:
TTTAATGTYTTTWA
TTYAAACATYTT--

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0791667

Alignment:
TAASTCTWTTTTAA
--AAMATGTTTMAA

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0830729

Alignment:
BTTHAAAAAAYAAAAAAR
-TTYAAACATYTT-----

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 12
Similarity score: 0.0970238

Alignment:
WHAATTAAARAARAAAAAAA
-------AAMATGTTTMAA-

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.0983333

Alignment:
AAAGGTCAAAGGTCAAC
----TTYAAACATYTT-

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.1

Alignment:
AAAAAAAAAAAAAT
AAMATGTTTMAA--

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 13
Motif name: Motif 13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.565909

Alignment:
AAWATRTATTT-
AAMATGTTTMAA

Original motif     Consensus sequence: AAWATRTATTT Reverse complement motif     Consensus sequence: AAATAKATWTT

Dataset #: 1
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.565909

Alignment:
TATKCTAAACCTAT-
---TTYAAACATYTT

Original motif     Consensus sequence: ATAGGTTTAGYATA Reverse complement motif     Consensus sequence: TATKCTAAACCTAT

Dataset #: 1
Motif ID: 12
Motif name: Motif 12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.577273

Alignment:
ACAACACATTT-
TTYAAACATYTT

Original motif     Consensus sequence: ACAACACATTT Reverse complement motif     Consensus sequence: AAATGTGTTGT

Dataset #: 1 Motif ID: 12 Motif name: Motif 12

Original motif     Consensus sequence: ACAACACATTT Reverse complement motif     Consensus sequence: AAATGTGTTGT

Best Matches for Motif ID 12 (Highest to Lowest)

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 11
Similarity score: 0.074904

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
-------AAATGTGTTGT------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0795455

Alignment:
TGGAGCACTGTGACAVCACAGTGG
------------ACAACACATTT-

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0795455

Alignment:
TTTAATGTYTTTWA
--AAATGTGTTGT-

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0891053

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
--------------ACAACACATTT

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 1
Motif ID: 13
Motif name: Motif 13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0909091

Alignment:
AAWATRTATTT
ACAACACATTT

Original motif     Consensus sequence: AAWATRTATTT Reverse complement motif     Consensus sequence: AAATAKATWTT

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0909091

Alignment:
TTAAAAWAGASTTA
--ACAACACATTT-

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 1
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.102273

Alignment:
ATAGGTTTAGYATA
AAATGTGTTGT---

Original motif     Consensus sequence: ATAGGTTTAGYATA Reverse complement motif     Consensus sequence: TATKCTAAACCTAT

Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.102273

Alignment:
AATAGYATTTT
AAATGTGTTGT

Original motif     Consensus sequence: AAAATKCTATT Reverse complement motif     Consensus sequence: AATAGYATTTT

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.102273

Alignment:
AAMATGTTTMAA
AAATGTGTTGT-

Original motif     Consensus sequence: AAMATGTTTMAA Reverse complement motif     Consensus sequence: TTYAAACATYTT

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.113636

Alignment:
AAAAAAAAAAAAAT
---ACAACACATTT

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1 Motif ID: 13 Motif name: Motif 13

Original motif     Consensus sequence: AAWATRTATTT Reverse complement motif     Consensus sequence: AAATAKATWTT

Best Matches for Motif ID 13 (Highest to Lowest)

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0795455

Alignment:
TTAAAAWAGASTTA
--AAWATRTATTT-

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0795455

Alignment:
TGAAAATATGTT
-AAATAKATWTT

Original motif     Consensus sequence: AACATATTTTCA Reverse complement motif     Consensus sequence: TGAAAATATGTT

Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0795455

Alignment:
AATAGYATTTT
AAWATRTATTT

Original motif     Consensus sequence: AAAATKCTATT Reverse complement motif     Consensus sequence: AATAGYATTTT

Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0909091

Alignment:
AAAMATTGTTT
AAWATRTATTT

Original motif     Consensus sequence: AAAMATTGTTT Reverse complement motif     Consensus sequence: AAACAATYTTT

Dataset #: 1
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0909091

Alignment:
AATCTGTTATT
AAWATRTATTT

Original motif     Consensus sequence: AATAACAGATT Reverse complement motif     Consensus sequence: AATCTGTTATT

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0909091

Alignment:
TTTAATGTYTTTWA
-AAWATRTATTT--

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0909091

Alignment:
AAMATGTTTMAA
AAWATRTATTT-

Original motif     Consensus sequence: AAMATGTTTMAA Reverse complement motif     Consensus sequence: TTYAAACATYTT

Dataset #: 1
Motif ID: 12
Motif name: Motif 12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0909091

Alignment:
ACAACACATTT
AAWATRTATTT

Original motif     Consensus sequence: ACAACACATTT Reverse complement motif     Consensus sequence: AAATGTGTTGT

Dataset #: 1
Motif ID: 24
Motif name: Motif 24
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0909091

Alignment:
TTWATGWCTTT
AAWATRTATTT

Original motif     Consensus sequence: AAAGWCATWAA Reverse complement motif     Consensus sequence: TTWATGWCTTT

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.102273

Alignment:
ATTTTTTTTTTTTT
AAWATRTATTT---

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1 Motif ID: 14 Motif name: Motif 14

Original motif     Consensus sequence: TAATKATATAA Reverse complement motif     Consensus sequence: TTATATYATTA

Best Matches for Motif ID 14 (Highest to Lowest)

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0482955

Alignment:
TTTAATGTYTTTWA
--TTATATYATTA-

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 11
Similarity score: 0.0629058

Alignment:
WHAATTAAARAARAAAAAAA
-TAATKATATAA--------

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0710227

Alignment:
ATGTWTTCATTMAT
-TTATATYATTA--

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0710227

Alignment:
ATTTTTTTTTTTTT
--TTATATYATTA-

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0710227

Alignment:
TGAAAATATGTT
-TAATKATATAA

Original motif     Consensus sequence: AACATATTTTCA Reverse complement motif     Consensus sequence: TGAAAATATGTT

Dataset #: 1
Motif ID: 16
Motif name: Motif 16
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0710227

Alignment:
TWTTGACAYAGA
TAATKATATAA-

Original motif     Consensus sequence: TCTKTGTCAAWA Reverse complement motif     Consensus sequence: TWTTGACAYAGA

Dataset #: 1
Motif ID: 29
Motif name: Motif 29
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0710227

Alignment:
ATTTATTGCTA
TTATATYATTA

Original motif     Consensus sequence: ATTTATTGCTA Reverse complement motif     Consensus sequence: TAGCAATAAAT

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0752841

Alignment:
KTTTTTTKTTTTTTDAAB
-----TTATATYATTA--

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0778409

Alignment:
TTTRKTTTHTTTTH
-TTATATYATTA--

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0823864

Alignment:
AAMATGTTTMAA
-TAATKATATAA

Original motif     Consensus sequence: AAMATGTTTMAA Reverse complement motif     Consensus sequence: TTYAAACATYTT

Dataset #: 1 Motif ID: 15 Motif name: Motif 15

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Best Matches for Motif ID 15 (Highest to Lowest)

Dataset #: 1
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0865385

Alignment:
ATAGGTTTAGYATA
-TAGTTTYAKCTTT

Original motif     Consensus sequence: ATAGGTTTAGYATA Reverse complement motif     Consensus sequence: TATKCTAAACCTAT

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0938462

Alignment:
AAAGGTCAAAGGTCAAC
AAAGRTMAAACTA----

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0961538

Alignment:
AAAAAAAAAAAAAT
AAAGRTMAAACTA-

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.100962

Alignment:
HAAAAHAAARMAAA
AAAGRTMAAACTA-

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 13
Similarity score: 0.101648

Alignment:
WHAATTAAARAARAAAAAAA
------AAAGRTMAAACTA-

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 13
Similarity score: 0.110577

Alignment:
BTTHAAAAAAYAAAAAAR
-----AAAGRTMAAACTA

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.125

Alignment:
GAKAGKTGGCTCWG
AAAGRTMAAACTA-

Original motif     Consensus sequence: CWGAGCCAYCTYTC Reverse complement motif     Consensus sequence: GAKAGKTGGCTCWG

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.125

Alignment:
TAASTCTWTTTTAA
TAGTTTYAKCTTT-

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.125

Alignment:
ATGTWTTCATTMAT
-TAGTTTYAKCTTT

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 1
Motif ID: 22
Motif name: Motif 22
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.614583

Alignment:
-ATGCTCACCATAAA
AAAGRTMAAACTA--

Original motif     Consensus sequence: TTTATGGTGAGCAT Reverse complement motif     Consensus sequence: ATGCTCACCATAAA

Dataset #: 1 Motif ID: 16 Motif name: Motif 16

Original motif     Consensus sequence: TCTKTGTCAAWA Reverse complement motif     Consensus sequence: TWTTGACAYAGA

Best Matches for Motif ID 16 (Highest to Lowest)

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 12
Similarity score: 0.100225

Alignment:
TGGAGCACTGTGACAVCACAGTGG
------TCTKTGTCAAWA------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 12
Similarity score: 0.100694

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
--------TCTKTGTCAAWA-----

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.102141

Alignment:
TGTGGTGTCACAGTGCTCC
--TWTTGACAYAGA-----

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.103433

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
------------TWTTGACAYAGA

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 12
Similarity score: 0.104492

Alignment:
AMTGTGACACCACAGT
TCTKTGTCAAWA----

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.11849

Alignment:
KTTTTTTKTTTTTTDAAB
----TCTKTGTCAAWA--

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 12
Similarity score: 0.119048

Alignment:
TTTTTTTKTTKTTTAATTHW
-------TCTKTGTCAAWA-

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.121043

Alignment:
TGRCCTKTGHCCKAB
---TCTKTGTCAAWA

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.121667

Alignment:
GTTGACCTTTGACCTTT
-----TCTKTGTCAAWA

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.125

Alignment:
ATYAATGAAWACAT
-TCTKTGTCAAWA-

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 1 Motif ID: 17 Motif name: Motif 17

Original motif     Consensus sequence: CTTCTGACCTC Reverse complement motif     Consensus sequence: GAGGTCAGAAG

Best Matches for Motif ID 17 (Highest to Lowest)

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0348052

Alignment:
AAAGGTCAAAGGTCAAC
-GAGGTCAGAAG-----

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0792232

Alignment:
BTRGGDCARAGGKCA
-GAGGTCAGAAG---

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 1
Motif ID: 22
Motif name: Motif 22
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0793506

Alignment:
TTTATGGTGAGCAT
---GAGGTCAGAAG

Original motif     Consensus sequence: TTTATGGTGAGCAT Reverse complement motif     Consensus sequence: ATGCTCACCATAAA

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0793506

Alignment:
TAGTTTYAKCTTT
-CTTCTGACCTC-

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0793506

Alignment:
TTYGGAAAGCAG
-GAGGTCAGAAG

Original motif     Consensus sequence: CTGCTTTCCMAA Reverse complement motif     Consensus sequence: TTYGGAAAGCAG

Dataset #: 1
Motif ID: 24
Motif name: Motif 24
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0793506

Alignment:
TTWATGWCTTT
CTTCTGACCTC

Original motif     Consensus sequence: AAAGWCATWAA Reverse complement motif     Consensus sequence: TTWATGWCTTT

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0794143

Alignment:
BAGGYCABHBTGACCKHV
------CTTCTGACCTC-

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0799909

Alignment:
ACTGTGACACCACAGTGGAGCACT
CTTCTGACCTC-------------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0800609

Alignment:
ACTGTGGTGTCACART
-----GAGGTCAGAAG

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 11
Similarity score: 0.0877439

Alignment:
GGYGCTGTCCATGGTGCTGAA
-CTTCTGACCTC---------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 1 Motif ID: 18 Motif name: Motif 18

Original motif     Consensus sequence: CAAAGTCCAGC Reverse complement motif     Consensus sequence: GCTGGACTTTG

Best Matches for Motif ID 18 (Highest to Lowest)

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.0763636

Alignment:
AAAGGTCAAAGGTCAAC
------CAAAGTCCAGC

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0780303

Alignment:
ABCACAGTGGAGCACTG
--CAAAGTCCAGC----

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0795455

Alignment:
AGTGCTCCACTGTGDTG
---GCTGGACTTTG---

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0797055

Alignment:
ACTGTGACACCACAGTGGAGCACT
----------CAAAGTCCAGC---

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0894661

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
---GCTGGACTTTG-----------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 13
Number of overlap: 11
Similarity score: 0.10258

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
------------CAAAGTCCAGC-

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 11
Similarity score: 0.107008

Alignment:
TGTGGTGTCACAGTGCTCC
--------CAAAGTCCAGC

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.110715

Alignment:
TTCAGCACCATGGACAGCKCC
-------CAAAGTCCAGC---

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.113636

Alignment:
AAAGRTMAAACTA
CAAAGTCCAGC--

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.120455

Alignment:
HAAAAHAAARMAAA
CAAAGTCCAGC---

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 1 Motif ID: 19 Motif name: Motif 19

Original motif     Consensus sequence: AGAGAAAG Reverse complement motif     Consensus sequence: CTTTCTCT

Best Matches for Motif ID 19 (Highest to Lowest)

Dataset #: 1
Motif ID: 43
Motif name: Motif 43
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.046875

Alignment:
TGCCTTTCYTT
---CTTTCTCT

Original motif     Consensus sequence: AAKGAAAGGCA Reverse complement motif     Consensus sequence: TGCCTTTCYTT

Dataset #: 1
Motif ID: 16
Motif name: Motif 16
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.078125

Alignment:
TWTTGACAYAGA
-AGAGAAAG---

Original motif     Consensus sequence: TCTKTGTCAAWA Reverse complement motif     Consensus sequence: TWTTGACAYAGA

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.078125

Alignment:
CTGCTTTCCMAA
---CTTTCTCT-

Original motif     Consensus sequence: CTGCTTTCCMAA Reverse complement motif     Consensus sequence: TTYGGAAAGCAG

Dataset #: 1
Motif ID: 44
Motif name: Motif 44
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.078125

Alignment:
TTCTTYCATT
--CTTTCTCT

Original motif     Consensus sequence: AATGKAAGAA Reverse complement motif     Consensus sequence: TTCTTYCATT

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.09375

Alignment:
AAAAAAAAAAAAAT
------AGAGAAAG

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.09375

Alignment:
TAGTTTYAKCTTT
---CTTTCTCT--

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1
Motif ID: 41
Motif name: Motif 41
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.09375

Alignment:
TGGAGGAAA
-AGAGAAAG

Original motif     Consensus sequence: TGGAGGAAA Reverse complement motif     Consensus sequence: TTTCCTCCA

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 8
Similarity score: 0.0959821

Alignment:
WHAATTAAARAARAAAAAAA
---------AGAGAAAG---

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.09625

Alignment:
GTTGACCTTTGACCTTT
------CTTTCTCT---

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.101562

Alignment:
HAAAAHAAARMAAA
--AGAGAAAG----

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 1 Motif ID: 20 Motif name: Motif 20

Original motif     Consensus sequence: TCCTCCTGGAA Reverse complement motif     Consensus sequence: TTCCAGGAGGA

Best Matches for Motif ID 20 (Highest to Lowest)

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 11
Similarity score: 0.102062

Alignment:
BMSMGCCYMCTKSTGGMHM
-------TCCTCCTGGAA-

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 2
Motif ID: 47
Motif name: Motif 47
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.121753

Alignment:
YGCCACCTDSTGGY
-TCCTCCTGGAA--

Original motif     Consensus sequence: YGCCACCTDSTGGY Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.125

Alignment:
TTYGGAAAGCAG
TTCCAGGAGGA-

Original motif     Consensus sequence: CTGCTTTCCMAA Reverse complement motif     Consensus sequence: TTYGGAAAGCAG

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.125

Alignment:
ATYAATGAAWACAT
TTCCAGGAGGA---

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 3
Motif ID: 56
Motif name: Mycn
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.612329

Alignment:
GCCACGTGSD-
TCCTCCTGGAA

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD

Dataset #: 1
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.6125

Alignment:
ATTCTGTRAAG-
-TTCCAGGAGGA

Original motif     Consensus sequence: ATTCTGTRAAG Reverse complement motif     Consensus sequence: CTTKACAGAAT

Dataset #: 3
Motif ID: 58
Motif name: Myc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.615419

Alignment:
DCCACGTGCV-
TCCTCCTGGAA

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 12
Number of overlap: 10
Similarity score: 0.62065

Alignment:
-TTCAGCACCATGGACAGCKCC
TTCCAGGAGGA-----------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 1
Motif ID: 22
Motif name: Motif 22
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.625

Alignment:
ATGCTCACCATAAA-
----TCCTCCTGGAA

Original motif     Consensus sequence: TTTATGGTGAGCAT Reverse complement motif     Consensus sequence: ATGCTCACCATAAA

Dataset #: 1
Motif ID: 30
Motif name: Motif 30
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.625

Alignment:
TTGCTGCTTTT-
-TCCTCCTGGAA

Original motif     Consensus sequence: TTGCTGCTTTT Reverse complement motif     Consensus sequence: AAAAGCAGCAA

Dataset #: 1 Motif ID: 21 Motif name: Motif 21

Original motif     Consensus sequence: CTGCTTTCCMAA Reverse complement motif     Consensus sequence: TTYGGAAAGCAG

Best Matches for Motif ID 21 (Highest to Lowest)

Dataset #: 1
Motif ID: 22
Motif name: Motif 22
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.075

Alignment:
ATGCTCACCATAAA
CTGCTTTCCMAA--

Original motif     Consensus sequence: TTTATGGTGAGCAT Reverse complement motif     Consensus sequence: ATGCTCACCATAAA

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 12
Similarity score: 0.0854167

Alignment:
BTTHAAAAAAYAAAAAAR
-TTYGGAAAGCAG-----

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 12
Similarity score: 0.0868982

Alignment:
GGYGCTGTCCATGGTGCTGAA
-CTGCTTTCCMAA--------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0938802

Alignment:
ACTGTGGTGTCACART
---CTGCTTTCCMAA-

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 12
Number of overlap: 12
Similarity score: 0.0952465

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
-----------CTGCTTTCCMAA-

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 12
Similarity score: 0.0978041

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
-----CTGCTTTCCMAA-------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.100752

Alignment:
TGTGGTGTCACAGTGCTCC
-CTGCTTTCCMAA------

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.10625

Alignment:
ATYAATGAAWACAT
--TTYGGAAAGCAG

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 1
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.10625

Alignment:
TATKCTAAACCTAT
-CTGCTTTCCMAA-

Original motif     Consensus sequence: ATAGGTTTAGYATA Reverse complement motif     Consensus sequence: TATKCTAAACCTAT

Dataset #: 1
Motif ID: 43
Motif name: Motif 43
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.583523

Alignment:
-TGCCTTTCYTT
CTGCTTTCCMAA

Original motif     Consensus sequence: AAKGAAAGGCA Reverse complement motif     Consensus sequence: TGCCTTTCYTT

Dataset #: 1 Motif ID: 22 Motif name: Motif 22

Original motif     Consensus sequence: TTTATGGTGAGCAT Reverse complement motif     Consensus sequence: ATGCTCACCATAAA

Best Matches for Motif ID 22 (Highest to Lowest)

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.125

Alignment:
ATYAATGAAWACAT
TTTATGGTGAGCAT

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 1
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.586538

Alignment:
-ATAGGTTTAGYATA
TTTATGGTGAGCAT-

Original motif     Consensus sequence: ATAGGTTTAGYATA Reverse complement motif     Consensus sequence: TATKCTAAACCTAT

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.625

Alignment:
TTTAATGTYTTTWA-
-TTTATGGTGAGCAT

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 1.09375

Alignment:
--CTGCTTTCCMAA
ATGCTCACCATAAA

Original motif     Consensus sequence: CTGCTTTCCMAA Reverse complement motif     Consensus sequence: TTYGGAAAGCAG

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 12
Similarity score: 1.11167

Alignment:
AAAGGTCAAAGGTCAAC--
-----TTTATGGTGAGCAT

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 1.11458

Alignment:
TAGTTTYAKCTTT--
-TTTATGGTGAGCAT

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 1.61364

Alignment:
---CTTKACAGAAT
ATGCTCACCATAAA

Original motif     Consensus sequence: ATTCTGTRAAG Reverse complement motif     Consensus sequence: CTTKACAGAAT

Dataset #: 1
Motif ID: 17
Motif name: Motif 17
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 1.61364

Alignment:
GAGGTCAGAAG---
TTTATGGTGAGCAT

Original motif     Consensus sequence: CTTCTGACCTC Reverse complement motif     Consensus sequence: GAGGTCAGAAG

Dataset #: 1
Motif ID: 31
Motif name: Motif 31
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 1.61364

Alignment:
---TTGTTGATTTT
TTTATGGTGAGCAT

Original motif     Consensus sequence: TTGTTGATTTT Reverse complement motif     Consensus sequence: AAAATCAACAA

Dataset #: 1
Motif ID: 24
Motif name: Motif 24
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 1.625

Alignment:
TTWATGWCTTT---
TTTATGGTGAGCAT

Original motif     Consensus sequence: AAAGWCATWAA Reverse complement motif     Consensus sequence: TTWATGWCTTT

Dataset #: 1 Motif ID: 23 Motif name: Motif 23

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Best Matches for Motif ID 23 (Highest to Lowest)

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0825893

Alignment:
ATTTTTTTTTTTTT
ATGTWTTCATTMAT

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0876913

Alignment:
WHAATTAAARAARAAAAAAA
---ATYAATGAAWACAT---

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0959821

Alignment:
BTTHAAAAAAYAAAAAAR
-ATYAATGAAWACAT---

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 1
Motif ID: 22
Motif name: Motif 22
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.109375

Alignment:
ATGCTCACCATAAA
ATGTWTTCATTMAT

Original motif     Consensus sequence: TTTATGGTGAGCAT Reverse complement motif     Consensus sequence: ATGCTCACCATAAA

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.109375

Alignment:
TWAAAKACATTAAA
ATGTWTTCATTMAT

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.590144

Alignment:
TAASTCTWTTTTAA-
-ATGTWTTCATTMAT

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.601683

Alignment:
HAAAAHAAARMAAA-
-ATYAATGAAWACAT

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.609375

Alignment:
-AAAGRTMAAACTA
ATYAATGAAWACAT

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 1.09896

Alignment:
--TATKCTAAACCTAT
ATYAATGAAWACAT--

Original motif     Consensus sequence: ATAGGTTTAGYATA Reverse complement motif     Consensus sequence: TATKCTAAACCTAT

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 1.10938

Alignment:
CTGCTTTCCMAA--
ATGTWTTCATTMAT

Original motif     Consensus sequence: CTGCTTTCCMAA Reverse complement motif     Consensus sequence: TTYGGAAAGCAG

Dataset #: 1 Motif ID: 24 Motif name: Motif 24

Original motif     Consensus sequence: AAAGWCATWAA Reverse complement motif     Consensus sequence: TTWATGWCTTT

Best Matches for Motif ID 24 (Highest to Lowest)

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0340909

Alignment:
TTTAATGTYTTTWA
-TTWATGWCTTT--

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 31
Motif name: Motif 31
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0795455

Alignment:
AAAATCAACAA
AAAGWCATWAA

Original motif     Consensus sequence: TTGTTGATTTT Reverse complement motif     Consensus sequence: AAAATCAACAA

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0909091

Alignment:
AAAAAAAAAAAAAT
-AAAGWCATWAA--

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 13
Motif name: Motif 13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0909091

Alignment:
AAATAKATWTT
AAAGWCATWAA

Original motif     Consensus sequence: AAWATRTATTT Reverse complement motif     Consensus sequence: AAATAKATWTT

Dataset #: 1
Motif ID: 30
Motif name: Motif 30
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0909091

Alignment:
AAAAGCAGCAA
AAAGWCATWAA

Original motif     Consensus sequence: TTGCTGCTTTT Reverse complement motif     Consensus sequence: AAAAGCAGCAA

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0951705

Alignment:
KTTTTTTKTTTTTTDAAB
--TTWATGWCTTT-----

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0977273

Alignment:
TTTRKTTTHTTTTH
-TTWATGWCTTT--

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 11
Similarity score: 0.099026

Alignment:
TTTTTTTKTTKTTTAATTHW
-TTWATGWCTTT--------

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.102273

Alignment:
AAAGRTMAAACTA
AAAGWCATWAA--

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 5
Motif ID: 89
Motif name: TFM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.112013

Alignment:
CACACACACACWCACACA
---AAAGWCATWAA----

Original motif     Consensus sequence: CACACACACACWCACACA Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG

Dataset #: 1 Motif ID: 25 Motif name: Motif 25

Original motif     Consensus sequence: AATAACAGATT Reverse complement motif     Consensus sequence: AATCTGTTATT

Best Matches for Motif ID 25 (Highest to Lowest)

Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0482955

Alignment:
AATAGYATTTT
AATAACAGATT

Original motif     Consensus sequence: AAAATKCTATT Reverse complement motif     Consensus sequence: AATAGYATTTT

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0596591

Alignment:
TAASTCTWTTTTAA
--AATCTGTTATT-

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0596591

Alignment:
ATTTTTTTTTTTTT
AATCTGTTATT---

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 13
Motif name: Motif 13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0596591

Alignment:
AAATAKATWTT
AATAACAGATT

Original motif     Consensus sequence: AAWATRTATTT Reverse complement motif     Consensus sequence: AAATAKATWTT

Dataset #: 1
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0596591

Alignment:
CTTKACAGAAT
AATAACAGATT

Original motif     Consensus sequence: ATTCTGTRAAG Reverse complement motif     Consensus sequence: CTTKACAGAAT

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0710227

Alignment:
TTTAATGTYTTTWA
---AATCTGTTATT

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0710227

Alignment:
AAAMATTGTTT
AATAACAGATT

Original motif     Consensus sequence: AAAMATTGTTT Reverse complement motif     Consensus sequence: AAACAATYTTT

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0798255

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
--------AATCTGTTATT-----

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0823864

Alignment:
AACATATTTTCA
-AATCTGTTATT

Original motif     Consensus sequence: AACATATTTTCA Reverse complement motif     Consensus sequence: TGAAAATATGTT

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0823864

Alignment:
AAMATGTTTMAA
-AATCTGTTATT

Original motif     Consensus sequence: AAMATGTTTMAA Reverse complement motif     Consensus sequence: TTYAAACATYTT

Dataset #: 1 Motif ID: 26 Motif name: Motif 26

Original motif     Consensus sequence: CTGTTTTWAT Reverse complement motif     Consensus sequence: ATWAAAACAG

Best Matches for Motif ID 26 (Highest to Lowest)

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0625

Alignment:
ATGTWTTCATTMAT
CTGTTTTWAT----

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 10
Similarity score: 0.0821429

Alignment:
WHAATTAAARAARAAAAAAA
---ATWAAAACAG-------

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0875

Alignment:
ATTTTTTTTTTTTT
----CTGTTTTWAT

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 16
Motif name: Motif 16
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0875

Alignment:
TCTKTGTCAAWA
-CTGTTTTWAT-

Original motif     Consensus sequence: TCTKTGTCAAWA Reverse complement motif     Consensus sequence: TWTTGACAYAGA

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0875

Alignment:
TTTAATGTYTTTWA
----CTGTTTTWAT

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.09

Alignment:
HAAAAHAAARMAAA
-ATWAAAACAG---

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.096875

Alignment:
KTTTTTTKTTTTTTDAAB
-----CTGTTTTWAT---

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.1

Alignment:
CTGCTTTCCMAA
CTGTTTTWAT--

Original motif     Consensus sequence: CTGCTTTCCMAA Reverse complement motif     Consensus sequence: TTYGGAAAGCAG

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.1125

Alignment:
TAASTCTWTTTTAA
---CTGTTTTWAT-

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 1
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.1125

Alignment:
AATCTGTTATT
CTGTTTTWAT-

Original motif     Consensus sequence: AATAACAGATT Reverse complement motif     Consensus sequence: AATCTGTTATT

Dataset #: 1 Motif ID: 27 Motif name: Motif 27

Original motif     Consensus sequence: ATTCTGTRAAG Reverse complement motif     Consensus sequence: CTTKACAGAAT

Best Matches for Motif ID 27 (Highest to Lowest)

Dataset #: 1
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0596591

Alignment:
AATCTGTTATT
ATTCTGTRAAG

Original motif     Consensus sequence: AATAACAGATT Reverse complement motif     Consensus sequence: AATCTGTTATT

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0696023

Alignment:
KTTTTTTKTTTTTTDAAB
-------ATTCTGTRAAG

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 1
Motif ID: 16
Motif name: Motif 16
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0710227

Alignment:
TWTTGACAYAGA
-CTTKACAGAAT

Original motif     Consensus sequence: TCTKTGTCAAWA Reverse complement motif     Consensus sequence: TWTTGACAYAGA

Dataset #: 4
Motif ID: 81
Motif name: ctatacggacg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0710227

Alignment:
CGTCCGTATAG
ATTCTGTRAAG

Original motif     Consensus sequence: CTATACGGACG Reverse complement motif     Consensus sequence: CGTCCGTATAG

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.080763

Alignment:
TTTTTTTKTTKTTTAATTHW
-------ATTCTGTRAAG--

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 1
Motif ID: 22
Motif name: Motif 22
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0823864

Alignment:
ATGCTCACCATAAA
---CTTKACAGAAT

Original motif     Consensus sequence: TTTATGGTGAGCAT Reverse complement motif     Consensus sequence: ATGCTCACCATAAA

Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0901989

Alignment:
AMTGTGACACCACAGT
--CTTKACAGAAT---

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0910985

Alignment:
ABCACAGTGGAGCACTG
-ATTCTGTRAAG-----

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 12
Number of overlap: 11
Similarity score: 0.0921495

Alignment:
ACTGTGACACCACAGTGGAGCACT
--CTTKACAGAAT-----------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 11
Similarity score: 0.0925215

Alignment:
TGGAGCACTGTGACAVCACAGTGG
--------CTTKACAGAAT-----

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 1 Motif ID: 28 Motif name: Motif 28

Original motif     Consensus sequence: ATTTAGTAAA Reverse complement motif     Consensus sequence: TTTACTAAAT

Best Matches for Motif ID 28 (Highest to Lowest)

Dataset #: 1
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0625

Alignment:
ATTCTGTRAAG
ATTTAGTAAA-

Original motif     Consensus sequence: ATTCTGTRAAG Reverse complement motif     Consensus sequence: CTTKACAGAAT

Dataset #: 1
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0625

Alignment:
ATAGGTTTAGYATA
----ATTTAGTAAA

Original motif     Consensus sequence: ATAGGTTTAGYATA Reverse complement motif     Consensus sequence: TATKCTAAACCTAT

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0875

Alignment:
TWAAAKACATTAAA
----ATTTAGTAAA

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 10
Similarity score: 0.09375

Alignment:
BTTHAAAAAAYAAAAAAR
-TTTACTAAAT-------

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.1

Alignment:
ATGTWTTCATTMAT
----ATTTAGTAAA

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 1
Motif ID: 29
Motif name: Motif 29
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.1

Alignment:
TAGCAATAAAT
-TTTACTAAAT

Original motif     Consensus sequence: ATTTATTGCTA Reverse complement motif     Consensus sequence: TAGCAATAAAT

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 10
Similarity score: 0.105357

Alignment:
WHAATTAAARAARAAAAAAA
--ATTTAGTAAA--------

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 1
Motif ID: 16
Motif name: Motif 16
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.1125

Alignment:
TCTKTGTCAAWA
ATTTAGTAAA--

Original motif     Consensus sequence: TCTKTGTCAAWA Reverse complement motif     Consensus sequence: TWTTGACAYAGA

Dataset #: 1
Motif ID: 14
Motif name: Motif 14
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.1125

Alignment:
TAATKATATAA
-ATTTAGTAAA

Original motif     Consensus sequence: TAATKATATAA Reverse complement motif     Consensus sequence: TTATATYATTA

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.115

Alignment:
TTTRKTTTHTTTTH
TTTACTAAAT----

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 1 Motif ID: 29 Motif name: Motif 29

Original motif     Consensus sequence: ATTTATTGCTA Reverse complement motif     Consensus sequence: TAGCAATAAAT

Best Matches for Motif ID 29 (Highest to Lowest)

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0909091

Alignment:
ATTTTTTTTTTTTT
ATTTATTGCTA---

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 14
Motif name: Motif 14
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.102273

Alignment:
TAATKATATAA
TAGCAATAAAT

Original motif     Consensus sequence: TAATKATATAA Reverse complement motif     Consensus sequence: TTATATYATTA

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.102273

Alignment:
ATYAATGAAWACAT
---TAGCAATAAAT

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.113636

Alignment:
AAAMATTGTTT
ATTTATTGCTA

Original motif     Consensus sequence: AAAMATTGTTT Reverse complement motif     Consensus sequence: AAACAATYTTT

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.113636

Alignment:
AAAGRTMAAACTA
-TAGCAATAAAT-

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.113636

Alignment:
AACATATTTTCA
-ATTTATTGCTA

Original motif     Consensus sequence: AACATATTTTCA Reverse complement motif     Consensus sequence: TGAAAATATGTT

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 11
Similarity score: 0.113636

Alignment:
TTTTTTTKTTKTTTAATTHW
---ATTTATTGCTA------

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.120739

Alignment:
BTTHAAAAAAYAAAAAAR
-------TAGCAATAAAT

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.125

Alignment:
TTTAATGTYTTTWA
ATTTATTGCTA---

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.125

Alignment:
AAMATGTTTMAA
-ATTTATTGCTA

Original motif     Consensus sequence: AAMATGTTTMAA Reverse complement motif     Consensus sequence: TTYAAACATYTT

Dataset #: 1 Motif ID: 30 Motif name: Motif 30

Original motif     Consensus sequence: TTGCTGCTTTT Reverse complement motif     Consensus sequence: AAAAGCAGCAA

Best Matches for Motif ID 30 (Highest to Lowest)

Dataset #: 1
Motif ID: 31
Motif name: Motif 31
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0142045

Alignment:
TTGTTGATTTT
TTGCTGCTTTT

Original motif     Consensus sequence: TTGTTGATTTT Reverse complement motif     Consensus sequence: AAAATCAACAA

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0482955

Alignment:
TTTAATGTYTTTWA
-TTGCTGCTTTT--

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0573864

Alignment:
TTTRKTTTHTTTTH
--TTGCTGCTTTT-

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 1
Motif ID: 24
Motif name: Motif 24
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0596591

Alignment:
TTWATGWCTTT
TTGCTGCTTTT

Original motif     Consensus sequence: AAAGWCATWAA Reverse complement motif     Consensus sequence: TTWATGWCTTT

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0596591

Alignment:
AAAAAAAAAAAAAT
AAAAGCAGCAA---

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0610795

Alignment:
KTTTTTTKTTTTTTDAAB
--TTGCTGCTTTT-----

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 11
Similarity score: 0.0629058

Alignment:
TTTTTTTKTTKTTTAATTHW
-TTGCTGCTTTT--------

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0756642

Alignment:
CTGCTGBDBBDGBD
TTGCTGCTTTT---

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 1
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0823864

Alignment:
AATCTGTTATT
TTGCTGCTTTT

Original motif     Consensus sequence: AATAACAGATT Reverse complement motif     Consensus sequence: AATCTGTTATT

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0823864

Alignment:
TTYAAACATYTT
-TTGCTGCTTTT

Original motif     Consensus sequence: AAMATGTTTMAA Reverse complement motif     Consensus sequence: TTYAAACATYTT

Dataset #: 1 Motif ID: 31 Motif name: Motif 31

Original motif     Consensus sequence: TTGTTGATTTT Reverse complement motif     Consensus sequence: AAAATCAACAA

Best Matches for Motif ID 31 (Highest to Lowest)

Dataset #: 1
Motif ID: 30
Motif name: Motif 30
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0454545

Alignment:
TTGCTGCTTTT
TTGTTGATTTT

Original motif     Consensus sequence: TTGCTGCTTTT Reverse complement motif     Consensus sequence: AAAAGCAGCAA

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0681818

Alignment:
ATTTTTTTTTTTTT
---TTGTTGATTTT

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0746753

Alignment:
TTTTTTTKTTKTTTAATTHW
-TTGTTGATTTT--------

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0795455

Alignment:
TTTAATGTYTTTWA
-TTGTTGATTTT--

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 24
Motif name: Motif 24
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0795455

Alignment:
TTWATGWCTTT
TTGTTGATTTT

Original motif     Consensus sequence: AAAGWCATWAA Reverse complement motif     Consensus sequence: TTWATGWCTTT

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0809659

Alignment:
KTTTTTTKTTTTTTDAAB
--TTGTTGATTTT-----

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0852273

Alignment:
TTTRKTTTHTTTTH
--TTGTTGATTTT-

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 1
Motif ID: 13
Motif name: Motif 13
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.113636

Alignment:
AAWATRTATTT
AAAATCAACAA

Original motif     Consensus sequence: AAWATRTATTT Reverse complement motif     Consensus sequence: AAATAKATWTT

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.113636

Alignment:
ATYAATGAAWACAT
-AAAATCAACAA--

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.113636

Alignment:
TTYAAACATYTT
TTGTTGATTTT-

Original motif     Consensus sequence: AAMATGTTTMAA Reverse complement motif     Consensus sequence: TTYAAACATYTT

Dataset #: 1 Motif ID: 32 Motif name: Motif 32

Original motif     Consensus sequence: TTACWGTTT Reverse complement motif     Consensus sequence: AAACWGTAA

Best Matches for Motif ID 32 (Highest to Lowest)

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 9
Similarity score: 0.0347222

Alignment:
TTTAATGTYTTTWA
-TTACWGTTT----

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 9
Similarity score: 0.0486111

Alignment:
AATAACAGATT
--TTACWGTTT

Original motif     Consensus sequence: AATAACAGATT Reverse complement motif     Consensus sequence: AATCTGTTATT

Dataset #: 1
Motif ID: 30
Motif name: Motif 30
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 9
Similarity score: 0.0486111

Alignment:
TTGCTGCTTTT
TTACWGTTT--

Original motif     Consensus sequence: TTGCTGCTTTT Reverse complement motif     Consensus sequence: AAAAGCAGCAA

Dataset #: 1
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 9
Similarity score: 0.0625

Alignment:
CTTKACAGAAT
TTACWGTTT--

Original motif     Consensus sequence: ATTCTGTRAAG Reverse complement motif     Consensus sequence: CTTKACAGAAT

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 9
Similarity score: 0.0729167

Alignment:
KTTTTTTKTTTTTTDAAB
--TTACWGTTT-------

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 9
Similarity score: 0.0763889

Alignment:
ATTTTTTTTTTTTT
----TTACWGTTT-

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 31
Motif name: Motif 31
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 9
Similarity score: 0.0763889

Alignment:
AAAATCAACAA
--AAACWGTAA

Original motif     Consensus sequence: TTGTTGATTTT Reverse complement motif     Consensus sequence: AAAATCAACAA

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 9
Similarity score: 0.0763889

Alignment:
TTAAAAWAGASTTA
-----AAACWGTAA

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 1
Motif ID: 29
Motif name: Motif 29
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 9
Similarity score: 0.0763889

Alignment:
TAGCAATAAAT
AAACWGTAA--

Original motif     Consensus sequence: ATTTATTGCTA Reverse complement motif     Consensus sequence: TAGCAATAAAT

Dataset #: 1
Motif ID: 28
Motif name: Motif 28
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 0.0763889

Alignment:
ATTTAGTAAA
-AAACWGTAA

Original motif     Consensus sequence: ATTTAGTAAA Reverse complement motif     Consensus sequence: TTTACTAAAT

Dataset #: 1 Motif ID: 33 Motif name: Motif 33

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Best Matches for Motif ID 33 (Highest to Lowest)

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0821429

Alignment:
HAAAAHAAARMAAA
TWAAAKACATTAAA

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0918367

Alignment:
TTTTTTTKTTKTTTAATTHW
-TTTAATGTYTTTWA-----

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.09375

Alignment:
KTTTTTTKTTTTTTDAAB
-TTTAATGTYTTTWA---

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.107143

Alignment:
ATTTTTTTTTTTTT
TTTAATGTYTTTWA

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.125

Alignment:
ATYAATGAAWACAT
TTTAATGTYTTTWA

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.576923

Alignment:
-TAASTCTWTTTTAA
TTTAATGTYTTTWA-

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 1
Motif ID: 22
Motif name: Motif 22
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.625

Alignment:
-TTTATGGTGAGCAT
TTTAATGTYTTTWA-

Original motif     Consensus sequence: TTTATGGTGAGCAT Reverse complement motif     Consensus sequence: ATGCTCACCATAAA

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 1.09375

Alignment:
AAMATGTTTMAA--
TWAAAKACATTAAA

Original motif     Consensus sequence: AAMATGTTTMAA Reverse complement motif     Consensus sequence: TTYAAACATYTT

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 14
Number of overlap: 12
Similarity score: 1.12483

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG--
-------------TWAAAKACATTAAA

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 1.125

Alignment:
--AAAGRTMAAACTA
TWAAAKACATTAAA-

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1 Motif ID: 34 Motif name: Motif 34

Original motif     Consensus sequence: AAAGATGA Reverse complement motif     Consensus sequence: TCATCTTT

Best Matches for Motif ID 34 (Highest to Lowest)

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.03125

Alignment:
TAGTTTYAKCTTT
-----TCATCTTT

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0625

Alignment:
AACATATTTTCA
---TCATCTTT-

Original motif     Consensus sequence: AACATATTTTCA Reverse complement motif     Consensus sequence: TGAAAATATGTT

Dataset #: 4
Motif ID: 80
Motif name: taaacgatgcc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0625

Alignment:
GGCATCGTTTA
-TCATCTTT--

Original motif     Consensus sequence: TAAACGATGCC Reverse complement motif     Consensus sequence: GGCATCGTTTA

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.06375

Alignment:
GTTGACCTTTGACCTTT
--TCATCTTT-------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0697115

Alignment:
AKGYYCAAAGRTCA
------AAAGATGA

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 1
Motif ID: 35
Motif name: Motif 35
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.078125

Alignment:
CAAGAKCATCT
AAAGATGA---

Original motif     Consensus sequence: AGATGYTCTTG Reverse complement motif     Consensus sequence: CAAGAKCATCT

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.078125

Alignment:
TWAAAKACATTAAA
--AAAGATGA----

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.078125

Alignment:
TTYAAACATYTT
-AAAGATGA---

Original motif     Consensus sequence: AAMATGTTTMAA Reverse complement motif     Consensus sequence: TTYAAACATYTT

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.078125

Alignment:
TTAAAAWAGASTTA
--AAAGATGA----

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.078125

Alignment:
AAACAATYTTT
---TCATCTTT

Original motif     Consensus sequence: AAAMATTGTTT Reverse complement motif     Consensus sequence: AAACAATYTTT

Dataset #: 1 Motif ID: 35 Motif name: Motif 35

Original motif     Consensus sequence: AGATGYTCTTG Reverse complement motif     Consensus sequence: CAAGAKCATCT

Best Matches for Motif ID 35 (Highest to Lowest)

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.092803

Alignment:
TTTAATGTYTTTWA
--AGATGYTCTTG-

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 11
Similarity score: 0.0964903

Alignment:
GGYGCTGTCCATGGTGCTGAA
--AGATGYTCTTG--------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0999053

Alignment:
GAKAGKTGGCTCWG
AGATGYTCTTG---

Original motif     Consensus sequence: CWGAGCCAYCTYTC Reverse complement motif     Consensus sequence: GAKAGKTGGCTCWG

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.101926

Alignment:
CTGCTGBDBBDGBD
-AGATGYTCTTG--

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.104167

Alignment:
TAGTTTYAKCTTT
AGATGYTCTTG--

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1
Motif ID: 12
Motif name: Motif 12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.104167

Alignment:
ACAACACATTT
CAAGAKCATCT

Original motif     Consensus sequence: ACAACACATTT Reverse complement motif     Consensus sequence: AAATGTGTTGT

Dataset #: 1
Motif ID: 13
Motif name: Motif 13
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.104167

Alignment:
AAATAKATWTT
CAAGAKCATCT

Original motif     Consensus sequence: AAWATRTATTT Reverse complement motif     Consensus sequence: AAATAKATWTT

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.104167

Alignment:
AACATATTTTCA
-AGATGYTCTTG

Original motif     Consensus sequence: AACATATTTTCA Reverse complement motif     Consensus sequence: TGAAAATATGTT

Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.104167

Alignment:
AAAMATTGTTT
AGATGYTCTTG

Original motif     Consensus sequence: AAAMATTGTTT Reverse complement motif     Consensus sequence: AAACAATYTTT

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.104167

Alignment:
AAMATGTTTMAA
-AGATGYTCTTG

Original motif     Consensus sequence: AAMATGTTTMAA Reverse complement motif     Consensus sequence: TTYAAACATYTT

Dataset #: 1 Motif ID: 36 Motif name: Motif 36

Original motif     Consensus sequence: TGGTGTCA Reverse complement motif     Consensus sequence: TGACACCA

Best Matches for Motif ID 36 (Highest to Lowest)

Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0205078

Alignment:
ACTGTGGTGTCACART
----TGGTGTCA----

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 13
Number of overlap: 8
Similarity score: 0.0246479

Alignment:
ACTGTGACACCACAGTGGAGCACT
----TGACACCA------------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0338542

Alignment:
GGAGCACTGTGACACCACA
---------TGACACCA--

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 8
Similarity score: 0.035473

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
------TGGTGTCA----------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0575397

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
-----TGGTGTCA------------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.078125

Alignment:
AAAGRTMAAACTA
TGACACCA-----

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1
Motif ID: 16
Motif name: Motif 16
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.078125

Alignment:
TCTKTGTCAAWA
-TGGTGTCA---

Original motif     Consensus sequence: TCTKTGTCAAWA Reverse complement motif     Consensus sequence: TWTTGACAYAGA

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.078125

Alignment:
ATYAATGAAWACAT
-----TGACACCA-

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 1
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.078125

Alignment:
CTTKACAGAAT
--TGACACCA-

Original motif     Consensus sequence: ATTCTGTRAAG Reverse complement motif     Consensus sequence: CTTKACAGAAT

Dataset #: 2
Motif ID: 47
Motif name: Motif 47
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0915178

Alignment:
YGCCACCTDSTGGY
TGACACCA------

Original motif     Consensus sequence: YGCCACCTDSTGGY Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK

Dataset #: 1 Motif ID: 37 Motif name: Motif 37

Original motif     Consensus sequence: ACTTTGG Reverse complement motif     Consensus sequence: CCAAAGT

Best Matches for Motif ID 37 (Highest to Lowest)

Dataset #: 4
Motif ID: 69
Motif name: atactttggc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 7
Similarity score: 0

Alignment:
ATACTTTGGC
--ACTTTGG-

Original motif     Consensus sequence: ATACTTTGGC Reverse complement motif     Consensus sequence: GCCAAAGTAT

Dataset #: 4
Motif ID: 75
Motif name: wwCCAmAGTCmt
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.0275974

Alignment:
DDCCAMAGTCHB
--CCAAAGT---

Original motif     Consensus sequence: DDCCAMAGTCHB Reverse complement motif     Consensus sequence: VDGACTRTGGDD

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 7
Similarity score: 0.056841

Alignment:
ACTGTGACACCACAGTGGAGCACT
---------CCAAAGT--------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0597098

Alignment:
ACTGTGGTGTCACART
ACTTTGG---------

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.061942

Alignment:
AGTGCTCCACTGTGDTG
--------ACTTTGG--

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0625

Alignment:
ABCACAGTGGAGCACTG
-CCAAAGT---------

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0686813

Alignment:
TGAMCTTTGMMCYT
---ACTTTGG----

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0714286

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
-ACTTTGG-----------------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 16
Number of overlap: 7
Similarity score: 0.0714286

Alignment:
TGGAGCACTGTGACAVCACAGTGG
---------------CCAAAGT--

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0728571

Alignment:
GTTGACCTTTGACCTTT
-----ACTTTGG-----

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 1 Motif ID: 38 Motif name: Motif 38

Original motif     Consensus sequence: ATKAYTTTG Reverse complement motif     Consensus sequence: CAAAKTYAT

Best Matches for Motif ID 38 (Highest to Lowest)

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 0.0486111

Alignment:
TWAAAKACATTAAA
-CAAAKTYAT----

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 35
Motif name: Motif 35
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 9
Similarity score: 0.0625

Alignment:
CAAGAKCATCT
CAAAKTYAT--

Original motif     Consensus sequence: AGATGYTCTTG Reverse complement motif     Consensus sequence: CAAGAKCATCT

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 9
Similarity score: 0.0625

Alignment:
ATTTTTTTTTTTTT
ATKAYTTTG-----

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 8
Motif name: Motif 8
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 9
Similarity score: 0.0625

Alignment:
TGAAAATSCTT
-CAAAKTYAT-

Original motif     Consensus sequence: TGAAAATSCTT Reverse complement motif     Consensus sequence: AAGSATTTTCA

Dataset #: 1
Motif ID: 18
Motif name: Motif 18
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 9
Similarity score: 0.0625

Alignment:
GCTGGACTTTG
ATKAYTTTG--

Original motif     Consensus sequence: CAAAGTCCAGC Reverse complement motif     Consensus sequence: GCTGGACTTTG

Dataset #: 4
Motif ID: 75
Motif name: wwCCAmAGTCmt
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 9
Similarity score: 0.0650253

Alignment:
DDCCAMAGTCHB
---CAAAKTYAT

Original motif     Consensus sequence: DDCCAMAGTCHB Reverse complement motif     Consensus sequence: VDGACTRTGGDD

Dataset #: 4
Motif ID: 69
Motif name: atactttggc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 0.0763889

Alignment:
GCCAAAGTAT
-CAAAKTYAT

Original motif     Consensus sequence: ATACTTTGGC Reverse complement motif     Consensus sequence: GCCAAAGTAT

Dataset #: 1
Motif ID: 14
Motif name: Motif 14
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 9
Similarity score: 0.0763889

Alignment:
TTATATYATTA
ATKAYTTTG--

Original motif     Consensus sequence: TAATKATATAA Reverse complement motif     Consensus sequence: TTATATYATTA

Dataset #: 1
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 9
Similarity score: 0.0763889

Alignment:
AATAGYATTTT
-ATKAYTTTG-

Original motif     Consensus sequence: AAAATKCTATT Reverse complement motif     Consensus sequence: AATAGYATTTT

Dataset #: 1
Motif ID: 13
Motif name: Motif 13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 9
Similarity score: 0.0763889

Alignment:
AAATAKATWTT
ATKAYTTTG--

Original motif     Consensus sequence: AAWATRTATTT Reverse complement motif     Consensus sequence: AAATAKATWTT

Dataset #: 1 Motif ID: 39 Motif name: Motif 39

Original motif     Consensus sequence: GCTGTGAC Reverse complement motif     Consensus sequence: GTCACAGC

Best Matches for Motif ID 39 (Highest to Lowest)

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0546875

Alignment:
GGAGCACTGTGACACCACA
-----GCTGTGAC------

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.0551758

Alignment:
ACTGTGGTGTCACART
--------GTCACAGC

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 17
Number of overlap: 8
Similarity score: 0.0580986

Alignment:
ACTGTGACACCACAGTGGAGCACT
GCTGTGAC----------------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 11
Number of overlap: 8
Similarity score: 0.058277

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
----------GTCACAGC------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.06375

Alignment:
AAAGGTCAAAGGTCAAC
----GTCACAGC-----

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.0659722

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
--------GCTGTGAC---------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 1
Motif ID: 16
Motif name: Motif 16
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.078125

Alignment:
TCTKTGTCAAWA
GCTGTGAC----

Original motif     Consensus sequence: TCTKTGTCAAWA Reverse complement motif     Consensus sequence: TWTTGACAYAGA

Dataset #: 1
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.078125

Alignment:
ATTCTGTRAAG
--GCTGTGAC-

Original motif     Consensus sequence: ATTCTGTRAAG Reverse complement motif     Consensus sequence: CTTKACAGAAT

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0926496

Alignment:
HVCDBBDBCAGCAG
----GTCACAGC--

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 1
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.09375

Alignment:
AATCTGTTATT
-GCTGTGAC--

Original motif     Consensus sequence: AATAACAGATT Reverse complement motif     Consensus sequence: AATCTGTTATT

Dataset #: 1 Motif ID: 40 Motif name: Motif 40

Original motif     Consensus sequence: AAGTTCA Reverse complement motif     Consensus sequence: TGAACTT

Best Matches for Motif ID 40 (Highest to Lowest)

Dataset #: 1
Motif ID: 18
Motif name: Motif 18
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0357143

Alignment:
CAAAGTCCAGC
--AAGTTCA--

Original motif     Consensus sequence: CAAAGTCCAGC Reverse complement motif     Consensus sequence: GCTGGACTTTG

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 7
Similarity score: 0.0371429

Alignment:
AAAGGTCAAAGGTCAAC
--------AAGTTCA--

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 7
Similarity score: 0.043956

Alignment:
TGAMCTTTGMMCYT
TGAACTT-------

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 54
Motif name: Esrrb
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.0492088

Alignment:
TGACCTTGMBBB
TGAACTT-----

Original motif     Consensus sequence: VBBYCAAGGTCA Reverse complement motif     Consensus sequence: TGACCTTGMBBB

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0535714

Alignment:
AAAGRTMAAACTA
-AAGTTCA-----

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1
Motif ID: 35
Motif name: Motif 35
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0535714

Alignment:
AGATGYTCTTG
-TGAACTT---

Original motif     Consensus sequence: AGATGYTCTTG Reverse complement motif     Consensus sequence: CAAGAKCATCT

Dataset #: 3
Motif ID: 61
Motif name: NR4A2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.0596546

Alignment:
GTGACCTT
-TGAACTT

Original motif     Consensus sequence: AAGGTCAC Reverse complement motif     Consensus sequence: GTGACCTT

Dataset #: 3
Motif ID: 62
Motif name: RORA_1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 7
Similarity score: 0.0614286

Alignment:
TGACCTDVWT
TGAACTT---

Original motif     Consensus sequence: AWVDAGGTCA Reverse complement motif     Consensus sequence: TGACCTDVWT

Dataset #: 5
Motif ID: 86
Motif name: TFW2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.0674603

Alignment:
YGGACTTACG
TGAACTT---

Original motif     Consensus sequence: YGGACTTACG Reverse complement motif     Consensus sequence: CGTAAGTCCK

Dataset #: 1
Motif ID: 34
Motif name: Motif 34
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.0714286

Alignment:
TCATCTTT
TGAACTT-

Original motif     Consensus sequence: AAAGATGA Reverse complement motif     Consensus sequence: TCATCTTT

Dataset #: 1 Motif ID: 41 Motif name: Motif 41

Original motif     Consensus sequence: TGGAGGAAA Reverse complement motif     Consensus sequence: TTTCCTCCA

Best Matches for Motif ID 41 (Highest to Lowest)

Dataset #: 1
Motif ID: 28
Motif name: Motif 28
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 9
Similarity score: 0.0645833

Alignment:
TTTACTAAAT
TTTCCTCCA-

Original motif     Consensus sequence: ATTTAGTAAA Reverse complement motif     Consensus sequence: TTTACTAAAT

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 9
Similarity score: 0.0645833

Alignment:
ATYAATGAAWACAT
----TGGAGGAAA-

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 9
Similarity score: 0.068287

Alignment:
ABCACAGTGGAGCACTG
-------TGGAGGAAA-

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 9
Similarity score: 0.0692782

Alignment:
ACTGTGACACCACAGTGGAGCACT
---------------TGGAGGAAA

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 9
Similarity score: 0.0697917

Alignment:
AGTGCTCCACTGTGDTG
TTTCCTCCA--------

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 16
Number of overlap: 9
Similarity score: 0.0844782

Alignment:
TGGAGCACTGTGACAVCACAGTGG
TGGAGGAAA---------------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 9
Similarity score: 0.0923611

Alignment:
TAGTTTYAKCTTT
---TTTCCTCCA-

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1
Motif ID: 20
Motif name: Motif 20
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 9
Similarity score: 0.0923611

Alignment:
TTCCAGGAGGA
-TGGAGGAAA-

Original motif     Consensus sequence: TCCTCCTGGAA Reverse complement motif     Consensus sequence: TTCCAGGAGGA

Dataset #: 1
Motif ID: 22
Motif name: Motif 22
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 0.0923611

Alignment:
ATGCTCACCATAAA
-TTTCCTCCA----

Original motif     Consensus sequence: TTTATGGTGAGCAT Reverse complement motif     Consensus sequence: ATGCTCACCATAAA

Dataset #: 1
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 9
Similarity score: 0.0923611

Alignment:
ATAGGTTTAGYATA
-----TGGAGGAAA

Original motif     Consensus sequence: ATAGGTTTAGYATA Reverse complement motif     Consensus sequence: TATKCTAAACCTAT

Dataset #: 1 Motif ID: 42 Motif name: Motif 42

Original motif     Consensus sequence: TGAATGAA Reverse complement motif     Consensus sequence: TTCATTCA

Best Matches for Motif ID 42 (Highest to Lowest)

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.015625

Alignment:
ATYAATGAAWACAT
-----TGAATGAA-

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 1
Motif ID: 44
Motif name: Motif 44
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.046875

Alignment:
TTCTTYCATT
TTCATTCA--

Original motif     Consensus sequence: AATGKAAGAA Reverse complement motif     Consensus sequence: TTCTTYCATT

Dataset #: 1
Motif ID: 41
Motif name: Motif 41
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0625

Alignment:
TGGAGGAAA
TGAATGAA-

Original motif     Consensus sequence: TGGAGGAAA Reverse complement motif     Consensus sequence: TTTCCTCCA

Dataset #: 1
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.078125

Alignment:
ATTCTGTRAAG
--TTCATTCA-

Original motif     Consensus sequence: ATTCTGTRAAG Reverse complement motif     Consensus sequence: CTTKACAGAAT

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.078125

Alignment:
TWAAAKACATTAAA
-----TTCATTCA-

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.078125

Alignment:
TTYAAACATYTT
TTCATTCA----

Original motif     Consensus sequence: AAMATGTTTMAA Reverse complement motif     Consensus sequence: TTYAAACATYTT

Dataset #: 4
Motif ID: 80
Motif name: taaacgatgcc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.09375

Alignment:
GGCATCGTTTA
---TTCATTCA

Original motif     Consensus sequence: TAAACGATGCC Reverse complement motif     Consensus sequence: GGCATCGTTTA

Dataset #: 1
Motif ID: 28
Motif name: Motif 28
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.09375

Alignment:
ATTTAGTAAA
--TGAATGAA

Original motif     Consensus sequence: ATTTAGTAAA Reverse complement motif     Consensus sequence: TTTACTAAAT

Dataset #: 1
Motif ID: 31
Motif name: Motif 31
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.09375

Alignment:
AAAATCAACAA
---TGAATGAA

Original motif     Consensus sequence: TTGTTGATTTT Reverse complement motif     Consensus sequence: AAAATCAACAA

Dataset #: 1
Motif ID: 29
Motif name: Motif 29
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.09375

Alignment:
ATTTATTGCTA
--TTCATTCA-

Original motif     Consensus sequence: ATTTATTGCTA Reverse complement motif     Consensus sequence: TAGCAATAAAT

Dataset #: 1 Motif ID: 43 Motif name: Motif 43

Original motif     Consensus sequence: AAKGAAAGGCA Reverse complement motif     Consensus sequence: TGCCTTTCYTT

Best Matches for Motif ID 43 (Highest to Lowest)

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.102273

Alignment:
TTTRKTTTHTTTTH
-TGCCTTTCYTT--

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.102273

Alignment:
ATTTTTTTTTTTTT
---TGCCTTTCYTT

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.102273

Alignment:
TTYGGAAAGCAG
-AAKGAAAGGCA

Original motif     Consensus sequence: CTGCTTTCCMAA Reverse complement motif     Consensus sequence: TTYGGAAAGCAG

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.112013

Alignment:
TTTTTTTKTTKTTTAATTHW
--TGCCTTTCYTT-------

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.113636

Alignment:
TAASTCTWTTTTAA
TGCCTTTCYTT---

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.113636

Alignment:
TWAAAKACATTAAA
-AAKGAAAGGCA--

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 8
Motif name: Motif 8
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.113636

Alignment:
AAGSATTTTCA
AAKGAAAGGCA

Original motif     Consensus sequence: TGAAAATSCTT Reverse complement motif     Consensus sequence: AAGSATTTTCA

Dataset #: 1
Motif ID: 24
Motif name: Motif 24
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.113636

Alignment:
TTWATGWCTTT
TGCCTTTCYTT

Original motif     Consensus sequence: AAAGWCATWAA Reverse complement motif     Consensus sequence: TTWATGWCTTT

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.113636

Alignment:
ATGTWTTCATTMAT
---TGCCTTTCYTT

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 3
Motif ID: 54
Motif name: Esrrb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.116255

Alignment:
VBBYCAAGGTCA
-AAKGAAAGGCA

Original motif     Consensus sequence: VBBYCAAGGTCA Reverse complement motif     Consensus sequence: TGACCTTGMBBB

Dataset #: 1 Motif ID: 44 Motif name: Motif 44

Original motif     Consensus sequence: AATGKAAGAA Reverse complement motif     Consensus sequence: TTCTTYCATT

Best Matches for Motif ID 44 (Highest to Lowest)

Dataset #: 1
Motif ID: 14
Motif name: Motif 14
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0541667

Alignment:
TTATATYATTA
TTCTTYCATT-

Original motif     Consensus sequence: TAATKATATAA Reverse complement motif     Consensus sequence: TTATATYATTA

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0541667

Alignment:
ATYAATGAAWACAT
-AATGKAAGAA---

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 1
Motif ID: 17
Motif name: Motif 17
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0666667

Alignment:
CTTCTGACCTC
TTCTTYCATT-

Original motif     Consensus sequence: CTTCTGACCTC Reverse complement motif     Consensus sequence: GAGGTCAGAAG

Dataset #: 1
Motif ID: 25
Motif name: Motif 25
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0666667

Alignment:
AATCTGTTATT
-TTCTTYCATT

Original motif     Consensus sequence: AATAACAGATT Reverse complement motif     Consensus sequence: AATCTGTTATT

Dataset #: 1
Motif ID: 43
Motif name: Motif 43
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0666667

Alignment:
AAKGAAAGGCA
AATGKAAGAA-

Original motif     Consensus sequence: AAKGAAAGGCA Reverse complement motif     Consensus sequence: TGCCTTTCYTT

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0666667

Alignment:
ATTTTTTTTTTTTT
-TTCTTYCATT---

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 10
Similarity score: 0.0684524

Alignment:
WHAATTAAARAARAAAAAAA
--AATGKAAGAA--------

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0754167

Alignment:
TTTRKTTTHTTTTH
-TTCTTYCATT---

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 1
Motif ID: 24
Motif name: Motif 24
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0791667

Alignment:
AAAGWCATWAA
AATGKAAGAA-

Original motif     Consensus sequence: AAAGWCATWAA Reverse complement motif     Consensus sequence: TTWATGWCTTT

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0791667

Alignment:
TAGTTTYAKCTTT
---TTCTTYCATT

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1 Motif ID: 45 Motif name: Motif 45

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Best Matches for Motif ID 45 (Highest to Lowest)

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 14
Similarity score: 0.100765

Alignment:
WHAATTAAARAARAAAAAAA
----TTAAAAWAGASTTA--

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.104911

Alignment:
BTTHAAAAAAYAAAAAAR
--TTAAAAWAGASTTA--

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.576923

Alignment:
TTTAATGTYTTTWA-
-TAASTCTWTTTTAA

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.591346

Alignment:
HAAAAHAAARMAAA-
-TTAAAAWAGASTTA

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.605769

Alignment:
-ATGTWTTCATTMAT
TAASTCTWTTTTAA-

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.605769

Alignment:
ATTTTTTTTTTTTT-
-TAASTCTWTTTTAA

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.605769

Alignment:
ATAGGTTTAGYATA-
-TAASTCTWTTTTAA

Original motif     Consensus sequence: ATAGGTTTAGYATA Reverse complement motif     Consensus sequence: TATKCTAAACCTAT

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 13
Number of overlap: 13
Similarity score: 0.620726

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG-
------------TTAAAAWAGASTTA

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.625

Alignment:
-TAGTTTYAKCTTT
TAASTCTWTTTTAA

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 1.09375

Alignment:
--AACATATTTTCA
TAASTCTWTTTTAA

Original motif     Consensus sequence: AACATATTTTCA Reverse complement motif     Consensus sequence: TGAAAATATGTT

Dataset #: 1 Motif ID: 46 Motif name: Motif 46

Original motif     Consensus sequence: ATAGGTTTAGYATA Reverse complement motif     Consensus sequence: TATKCTAAACCTAT

Best Matches for Motif ID 46 (Highest to Lowest)

Dataset #: 1
Motif ID: 22
Motif name: Motif 22
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0865385

Alignment:
-ATGCTCACCATAAA
TATKCTAAACCTAT-

Original motif     Consensus sequence: TTTATGGTGAGCAT Reverse complement motif     Consensus sequence: ATGCTCACCATAAA

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.0865385

Alignment:
-AAAGRTMAAACTA
TATKCTAAACCTAT

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.105769

Alignment:
-TAASTCTWTTTTAA
ATAGGTTTAGYATA-

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.614583

Alignment:
ATYAATGAAWACAT--
--TATKCTAAACCTAT

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.625

Alignment:
TTTAATGTYTTTWA--
--ATAGGTTTAGYATA

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 1.09091

Alignment:
---TTYAAACATYTT
TATKCTAAACCTAT-

Original motif     Consensus sequence: AAMATGTTTMAA Reverse complement motif     Consensus sequence: TTYAAACATYTT

Dataset #: 4
Motif ID: 80
Motif name: taaacgatgcc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 1.10227

Alignment:
---GGCATCGTTTA
ATAGGTTTAGYATA

Original motif     Consensus sequence: TAAACGATGCC Reverse complement motif     Consensus sequence: GGCATCGTTTA

Dataset #: 1
Motif ID: 12
Motif name: Motif 12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 1.10227

Alignment:
ACAACACATTT---
TATKCTAAACCTAT

Original motif     Consensus sequence: ACAACACATTT Reverse complement motif     Consensus sequence: AAATGTGTTGT

Dataset #: 1
Motif ID: 18
Motif name: Motif 18
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 1.125

Alignment:
---GCTGGACTTTG
TATKCTAAACCTAT

Original motif     Consensus sequence: CAAAGTCCAGC Reverse complement motif     Consensus sequence: GCTGGACTTTG

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 1.125

Alignment:
---TGAAAATATGTT
TATKCTAAACCTAT-

Original motif     Consensus sequence: AACATATTTTCA Reverse complement motif     Consensus sequence: TGAAAATATGTT

Dataset #: 2 Motif ID: 47 Motif name: Motif 47

Original motif     Consensus sequence: YGCCACCTDSTGGY Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK

Best Matches for Motif ID 47 (Highest to Lowest)

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0209936

Alignment:
BMSMGCCYMCTKSTGGMHM
---YGCCACCTDSTGGY--

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0790816

Alignment:
CAGTGCTCCACTGTGBT
---YGCCACCTDSTGGY

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0804767

Alignment:
AGTGCTCCACTGTGDTG
--YGCCACCTDSTGGY-

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 14
Similarity score: 0.0836896

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
--YGCCACCTDSTGGY--------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0913786

Alignment:
RAGKGMAGVRRGSRCASAGV
---KCCASDAGGTGGCK---

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 13
Similarity score: 0.582451

Alignment:
CHHCHBTCCTSCYTCTGC-
-----YGCCACCTDSTGGY

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 13
Similarity score: 0.590483

Alignment:
MGGTCAGGGTGACCTRDBHV-
-------YGCCACCTDSTGGY

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 54
Motif name: Esrrb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 1.08988

Alignment:
VBBYCAAGGTCA--
KCCASDAGGTGGCK

Original motif     Consensus sequence: VBBYCAAGGTCA Reverse complement motif     Consensus sequence: TGACCTTGMBBB

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 13
Number of overlap: 12
Similarity score: 1.09162

Alignment:
--CCACTGTGVTGTCACAGTGCTCCA
YGCCACCTDSTGGY------------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 74
Motif name: ssCCCCGCSssk
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 1.09358

Alignment:
SBCCCCGCCSBB--
YGCCACCTDSTGGY

Original motif     Consensus sequence: SBCCCCGCCSBB Reverse complement motif     Consensus sequence: BBSGGCGGGGBS

Dataset #: 2 Motif ID: 48 Motif name: Motif 48

Original motif     Consensus sequence: GCARRGGSAGS Reverse complement motif     Consensus sequence: SCTSCCKMTGC

Best Matches for Motif ID 48 (Highest to Lowest)

Dataset #: 1
Motif ID: 1
Motif name: Motif 1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0

Alignment:
GCAGAGGSAKG
GCARRGGSAGS

Original motif     Consensus sequence: CYTSCCTCTGC Reverse complement motif     Consensus sequence: GCAGAGGSAKG

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.000952693

Alignment:
GCAGAKGSAGGABDGHDG
GCARRGGSAGS-------

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.033658

Alignment:
YDRCCASYAGRKGGCRSYV
------GCARRGGSAGS--

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0410341

Alignment:
CTGCTGBDBBDGBD
--SCTSCCKMTGC-

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0422459

Alignment:
RAGKGMAGVRRGSRCASAGV
----GCARRGGSAGS-----

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 3
Motif ID: 65
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0533531

Alignment:
CCAGYYHVADCCRG
SCTSCCKMTGC---

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0578944

Alignment:
GGYGCTGTCCATGGTGCTGAA
---SCTSCCKMTGC-------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0620615

Alignment:
VDBHMAGGTCACCCTGACCY
--GCARRGGSAGS-------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 1
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0627554

Alignment:
HCAGRRVACASAG
GCARRGGSAGS--

Original motif     Consensus sequence: HCAGRRVACASAG Reverse complement motif     Consensus sequence: CTSTGTBKMCTGH

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0646979

Alignment:
VHRGGTCABDBTGMCCTB
---SCTSCCKMTGC----

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 2 Motif ID: 49 Motif name: Motif 49

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Best Matches for Motif ID 49 (Highest to Lowest)

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0548469

Alignment:
TTTTTTTKTTKTTTAATTHW
ATTTTTTTTTTTTT------

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 14
Similarity score: 0.0602679

Alignment:
KTTTTTTKTTTTTTDAAB
ATTTTTTTTTTTTT----

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0767857

Alignment:
HAAAAHAAARMAAA
AAAAAAAAAAAAAT

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0982143

Alignment:
ATYAATGAAWACAT
AAAAAAAAAAAAAT

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.107143

Alignment:
TWAAAKACATTAAA
AAAAAAAAAAAAAT

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.596154

Alignment:
-TAGTTTYAKCTTT
ATTTTTTTTTTTTT

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.605769

Alignment:
TTAAAAWAGASTTA-
-AAAAAAAAAAAAAT

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 1.125

Alignment:
AAMATGTTTMAA--
AAAAAAAAAAAAAT

Original motif     Consensus sequence: AAMATGTTTMAA Reverse complement motif     Consensus sequence: TTYAAACATYTT

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 1.125

Alignment:
TGAAAATATGTT--
AAAAAAAAAAAAAT

Original motif     Consensus sequence: AACATATTTTCA Reverse complement motif     Consensus sequence: TGAAAATATGTT

Dataset #: 1
Motif ID: 31
Motif name: Motif 31
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 1.56818

Alignment:
---AAAATCAACAA
AAAAAAAAAAAAAT

Original motif     Consensus sequence: TTGTTGATTTT Reverse complement motif     Consensus sequence: AAAATCAACAA

Dataset #: 2 Motif ID: 50 Motif name: Motif 50

Original motif     Consensus sequence: GGAAM Reverse complement motif     Consensus sequence: YTTCC

Best Matches for Motif ID 50 (Highest to Lowest)

Dataset #: 1
Motif ID: 41
Motif name: Motif 41
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 5
Similarity score: 0.01875

Alignment:
TGGAGGAAA
----GGAAM

Original motif     Consensus sequence: TGGAGGAAA Reverse complement motif     Consensus sequence: TTTCCTCCA

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 5
Similarity score: 0.01875

Alignment:
TTYGGAAAGCAG
----GGAAM---

Original motif     Consensus sequence: CTGCTTTCCMAA Reverse complement motif     Consensus sequence: TTYGGAAAGCAG

Dataset #: 1
Motif ID: 43
Motif name: Motif 43
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 5
Similarity score: 0.04375

Alignment:
TGCCTTTCYTT
----YTTCC--

Original motif     Consensus sequence: AAKGAAAGGCA Reverse complement motif     Consensus sequence: TGCCTTTCYTT

Dataset #: 1
Motif ID: 44
Motif name: Motif 44
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 5
Similarity score: 0.05625

Alignment:
TTCTTYCATT
--YTTCC---

Original motif     Consensus sequence: AATGKAAGAA Reverse complement motif     Consensus sequence: TTCTTYCATT

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 5
Similarity score: 0.06875

Alignment:
TGAAAATATGTT
------GGAAM-

Original motif     Consensus sequence: AACATATTTTCA Reverse complement motif     Consensus sequence: TGAAAATATGTT

Dataset #: 1
Motif ID: 8
Motif name: Motif 8
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 5
Similarity score: 0.06875

Alignment:
TGAAAATSCTT
GGAAM------

Original motif     Consensus sequence: TGAAAATSCTT Reverse complement motif     Consensus sequence: AAGSATTTTCA

Dataset #: 1
Motif ID: 28
Motif name: Motif 28
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.06875

Alignment:
TTTACTAAAT
YTTCC-----

Original motif     Consensus sequence: ATTTAGTAAA Reverse complement motif     Consensus sequence: TTTACTAAAT

Dataset #: 1
Motif ID: 19
Motif name: Motif 19
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 5
Similarity score: 0.06875

Alignment:
CTTTCTCT
-YTTCC--

Original motif     Consensus sequence: AGAGAAAG Reverse complement motif     Consensus sequence: CTTTCTCT

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.0747947

Alignment:
GGYGCTGTCCATGGTGCTGAA
-----YTTCC-----------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.075

Alignment:
ATYAATGAAWACAT
----GGAAM-----

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 3 Motif ID: 51 Motif name: HNF4A

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Best Matches for Motif ID 51 (Highest to Lowest)

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0

Alignment:
BTRGGDCARAGGKCA
--RGGBCAAAGKYCA

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0227413

Alignment:
AKGYYCAAAGRTCA
-RGGBCAAAGKYCA

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0423023

Alignment:
AAAGGTCAAAGGTCAAC
--RGGBCAAAGKYCA--

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 13
Similarity score: 0.0557654

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
-------RGGBCAAAGKYCA-----

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 13
Similarity score: 0.0609093

Alignment:
VCTSTGKSCMKBCTRCYCTK
------TGMYCTTTGBCCK-

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 13
Similarity score: 0.0656443

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
--------RGGBCAAAGKYCA---

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0671615

Alignment:
VHRGGTCABDBTGMCCTB
--RGGBCAAAGKYCA---

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0681338

Alignment:
TGTGGTGTCACAGTGCTCC
----RGGBCAAAGKYCA--

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.0711137

Alignment:
MGGTCAGGGTGACCTRDBHV
RGGBCAAAGKYCA-------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 13
Similarity score: 0.0741922

Alignment:
GGYGCTGTCCATGGTGCTGAA
-----TGMYCTTTGBCCK---

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3 Motif ID: 52 Motif name: NR2F1

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Best Matches for Motif ID 52 (Highest to Lowest)

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0289973

Alignment:
GTTGACCTTTGACCTTT
--TGAMCTTTGMMCYT-

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0393667

Alignment:
TGRCCTKTGHCCKAB
TGAMCTTTGMMCYT-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 14
Similarity score: 0.0713032

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
-----TGAMCTTTGMMCYT------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 14
Similarity score: 0.0742967

Alignment:
RAGKGMAGVRRGSRCASAGV
--AKGYYCAAAGRTCA----

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0825859

Alignment:
BAGGYCABHBTGACCKHV
---TGAMCTTTGMMCYT-

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 14
Similarity score: 0.0833345

Alignment:
TTCAGCACCATGGACAGCKCC
--AKGYYCAAAGRTCA-----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 14
Similarity score: 0.0852669

Alignment:
TGGAGCACTGTGACAVCACAGTGG
---TGAMCTTTGMMCYT-------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0855082

Alignment:
GGAGCACTGTGACACCACA
--TGAMCTTTGMMCYT---

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 3
Motif ID: 51
Motif name: HNF4A
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.525587

Alignment:
-TGMYCTTTGBCCK
TGAMCTTTGMMCYT

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 13
Similarity score: 0.581407

Alignment:
VDBHMAGGTCACCCTGACCY-
-------TGAMCTTTGMMCYT

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3 Motif ID: 53 Motif name: ESR1

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Best Matches for Motif ID 53 (Highest to Lowest)

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 20
Similarity score: 0.0722586

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
---VDBHMAGGTCACCCTGACCY-

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 20
Similarity score: 0.0818971

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
--VDBHMAGGTCACCCTGACCY---

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 19
Similarity score: 0.553964

Alignment:
-VCTSTGKSCMKBCTRCYCTK
VDBHMAGGTCACCCTGACCY-

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 19
Similarity score: 0.566376

Alignment:
-TGTGGTGTCACAGTGCTCC
VDBHMAGGTCACCCTGACCY

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 19
Similarity score: 0.579928

Alignment:
-BMSMGCCYMCTKSTGGMHM
VDBHMAGGTCACCCTGACCY

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 17
Similarity score: 1.50287

Alignment:
---VHRGGTCABDBTGMCCTB
VDBHMAGGTCACCCTGACCY-

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 17
Similarity score: 1.55953

Alignment:
CHHCHBTCCTSCYTCTGC---
-VDBHMAGGTCACCCTGACCY

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 5
Motif ID: 89
Motif name: TFM1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 17
Similarity score: 1.5827

Alignment:
---CACACACACACWCACACA
VDBHMAGGTCACCCTGACCY-

Original motif     Consensus sequence: CACACACACACWCACACA Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 16
Similarity score: 2.07409

Alignment:
TTCAGCACCATGGACAGCKCC----
-----VDBHMAGGTCACCCTGACCY

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 2.57517

Alignment:
ACTGTGGTGTCACART-----
-VDBHMAGGTCACCCTGACCY

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Dataset #: 3 Motif ID: 54 Motif name: Esrrb

Original motif     Consensus sequence: VBBYCAAGGTCA Reverse complement motif     Consensus sequence: TGACCTTGMBBB

Best Matches for Motif ID 54 (Highest to Lowest)

Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0613872

Alignment:
TGAMCTTTGMMCYT
--TGACCTTGMBBB

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0641161

Alignment:
BTRGGDCARAGGKCA
---VBBYCAAGGTCA

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 51
Motif name: HNF4A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0642069

Alignment:
RGGBCAAAGKYCA
-VBBYCAAGGTCA

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0678238

Alignment:
AAAGGTCAAAGGTCAAC
---VBBYCAAGGTCA--

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 12
Similarity score: 0.0799744

Alignment:
VDBHMAGGTCACCCTGACCY
TGACCTTGMBBB--------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 12
Similarity score: 0.0865873

Alignment:
VHRGGTCABDBTGMCCTB
-----TGACCTTGMBBB-

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.0884496

Alignment:
TTCAGCACCATGGACAGCKCC
----VBBYCAAGGTCA-----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0943816

Alignment:
TGTGGTGTCACAGTGCTCC
-------TGACCTTGMBBB

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 12
Number of overlap: 12
Similarity score: 0.0956646

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
-----------TGACCTTGMBBB-

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.100398

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
---VBBYCAAGGTCA----------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 3 Motif ID: 55 Motif name: ZEB1

Original motif     Consensus sequence: CACCTD Reverse complement motif     Consensus sequence: HAGGTG

Best Matches for Motif ID 55 (Highest to Lowest)

Dataset #: 2
Motif ID: 47
Motif name: Motif 47
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0

Alignment:
YGCCACCTDSTGGY
---CACCTD-----

Original motif     Consensus sequence: YGCCACCTDSTGGY Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.00902841

Alignment:
CWGAGCCAYCTYTC
------CACCTD--

Original motif     Consensus sequence: CWGAGCCAYCTYTC Reverse complement motif     Consensus sequence: GAKAGKTGGCTCWG

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 6
Similarity score: 0.0118423

Alignment:
YDRCCASYAGRKGGCRSYV
-------HAGGTG------

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 3
Motif ID: 62
Motif name: RORA_1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0187312

Alignment:
TGACCTDVWT
-CACCTD---

Original motif     Consensus sequence: AWVDAGGTCA Reverse complement motif     Consensus sequence: TGACCTDVWT

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0189156

Alignment:
GGYGCTGTCCATGGTGCTGAA
----------HAGGTG-----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 54
Motif name: Esrrb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 6
Similarity score: 0.0248883

Alignment:
VBBYCAAGGTCA
-HAGGTG-----

Original motif     Consensus sequence: VBBYCAAGGTCA Reverse complement motif     Consensus sequence: TGACCTTGMBBB

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0278775

Alignment:
GTTGACCTTTGACCTTT
----------CACCTD-

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 1
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.0285279

Alignment:
TATKCTAAACCTAT
-CACCTD-------

Original motif     Consensus sequence: ATAGGTTTAGYATA Reverse complement motif     Consensus sequence: TATKCTAAACCTAT

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0310859

Alignment:
TGRCCTKTGHCCKAB
-CACCTD--------

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 61
Motif name: NR4A2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0334919

Alignment:
GTGACCTT
--CACCTD

Original motif     Consensus sequence: AAGGTCAC Reverse complement motif     Consensus sequence: GTGACCTT

Dataset #: 3 Motif ID: 56 Motif name: Mycn

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD

Best Matches for Motif ID 56 (Highest to Lowest)

Dataset #: 3
Motif ID: 58
Motif name: Myc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0

Alignment:
DCCACGTGCV
GCCACGTGSD

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV

Dataset #: 4
Motif ID: 68
Motif name: sscCCCGCGcs
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0654819

Alignment:
BSCCCCGCGBS
-GCCACGTGSD

Original motif     Consensus sequence: BSCCCCGCGBS Reverse complement motif     Consensus sequence: SBCGCGGGGSB

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0679017

Alignment:
YDRCCASYAGRKGGCRSYV
-----HSCACGTGGC----

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 4
Motif ID: 74
Motif name: ssCCCCGCSssk
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0704988

Alignment:
BBSGGCGGGGBS
-HSCACGTGGC-

Original motif     Consensus sequence: SBCCCCGCCSBB Reverse complement motif     Consensus sequence: BBSGGCGGGGBS

Dataset #: 2
Motif ID: 47
Motif name: Motif 47
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0733001

Alignment:
KCCASDAGGTGGCK
-HSCACGTGGC---

Original motif     Consensus sequence: YGCCACCTDSTGGY Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 10
Similarity score: 0.0883224

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
------GCCACGTGSD---------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.089863

Alignment:
MGGTCAGGGTGACCTRDBHV
--------GCCACGTGSD--

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.0943014

Alignment:
ABCACAGTGGAGCACTG
-GCCACGTGSD------

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 3
Motif ID: 51
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0947124

Alignment:
TGMYCTTTGBCCK
-GCCACGTGSD--

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.0949359

Alignment:
ACTGTGACACCACAGTGGAGCACT
---------GCCACGTGSD-----

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 3 Motif ID: 57 Motif name: REST

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Best Matches for Motif ID 57 (Highest to Lowest)

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 20
Similarity score: 0.0656473

Alignment:
-VCTSTGKSCMKBCTRCYCTK
GGYGCTGTCCATGGTGCTGAA

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 19
Similarity score: 0.560523

Alignment:
--AGTGCTCCACTGTGGTGTCACAGT
GGYGCTGTCCATGGTGCTGAA-----

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 16
Similarity score: 2.06264

Alignment:
-----VDBHMAGGTCACCCTGACCY
TTCAGCACCATGGACAGCKCC----

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 14
Similarity score: 3.06651

Alignment:
CHHCHBTCCTSCYTCTGC-------
----GGYGCTGTCCATGGTGCTGAA

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 3.07032

Alignment:
-------ABCACAGTGGAGCACTG
GGYGCTGTCCATGGTGCTGAA---

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 3.07054

Alignment:
ACTGTGGTGTCACART-------
--GGYGCTGTCCATGGTGCTGAA

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 12
Number of overlap: 13
Similarity score: 3.54841

Alignment:
TGGAGCACTGTGACAVCACAGTGG--------
-----------TTCAGCACCATGGACAGCKCC

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 13
Similarity score: 3.55156

Alignment:
BAGGYCABHBTGACCKHV--------
-----GGYGCTGTCCATGGTGCTGAA

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 51
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 3.56375

Alignment:
TGMYCTTTGBCCK--------
GGYGCTGTCCATGGTGCTGAA

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 3.56574

Alignment:
--------BTRGGDCARAGGKCA
TTCAGCACCATGGACAGCKCC--

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3 Motif ID: 58 Motif name: Myc

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV

Best Matches for Motif ID 58 (Highest to Lowest)

Dataset #: 3
Motif ID: 56
Motif name: Mycn
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0

Alignment:
GCCACGTGSD
DCCACGTGCV

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD

Dataset #: 4
Motif ID: 68
Motif name: sscCCCGCGcs
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.064853

Alignment:
BSCCCCGCGBS
-DCCACGTGCV

Original motif     Consensus sequence: BSCCCCGCGBS Reverse complement motif     Consensus sequence: SBCGCGGGGSB

Dataset #: 4
Motif ID: 74
Motif name: ssCCCCGCSssk
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0728588

Alignment:
SBCCCCGCCSBB
-DCCACGTGCV-

Original motif     Consensus sequence: SBCCCCGCCSBB Reverse complement motif     Consensus sequence: BBSGGCGGGGBS

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 10
Similarity score: 0.0754257

Alignment:
YDRCCASYAGRKGGCRSYV
--DCCACGTGCV-------

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 2
Motif ID: 47
Motif name: Motif 47
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0792377

Alignment:
KCCASDAGGTGGCK
-VGCACGTGGH---

Original motif     Consensus sequence: YGCCACCTDSTGGY Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.0888909

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
----------DCCACGTGCV-----

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 3
Motif ID: 51
Motif name: HNF4A
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0934488

Alignment:
TGMYCTTTGBCCK
---VGCACGTGGH

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 10
Similarity score: 0.0940438

Alignment:
MGGTCAGGGTGACCTRDBHV
--------DCCACGTGCV--

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.0955234

Alignment:
ABCACAGTGGAGCACTG
-DCCACGTGCV------

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0968598

Alignment:
VHRGGTCABDBTGMCCTB
----VGCACGTGGH----

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3 Motif ID: 59 Motif name: ESR2

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Best Matches for Motif ID 59 (Highest to Lowest)

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0691727

Alignment:
VCTSTGKSCMKBCTRCYCTK
--VHRGGTCABDBTGMCCTB

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 18
Similarity score: 0.0717757

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
------VHRGGTCABDBTGMCCTB

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 18
Similarity score: 0.0815903

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
-VHRGGTCABDBTGMCCTB------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0916961

Alignment:
GGYGCTGTCCATGGTGCTGAA
-VHRGGTCABDBTGMCCTB--

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 17
Similarity score: 0.511812

Alignment:
VDBHMAGGTCACCCTGACCY-
---VHRGGTCABDBTGMCCTB

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 17
Similarity score: 0.569595

Alignment:
TGTGGTGTCACAGTGCTCC-
--VHRGGTCABDBTGMCCTB

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 17
Similarity score: 0.583467

Alignment:
GCAGAKGSAGGABDGHDG-
-VHRGGTCABDBTGMCCTB

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 1.56699

Alignment:
BTRGGDCARAGGKCA---
VHRGGTCABDBTGMCCTB

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 2.08635

Alignment:
CWGAGCCAYCTYTC----
VHRGGTCABDBTGMCCTB

Original motif     Consensus sequence: CWGAGCCAYCTYTC Reverse complement motif     Consensus sequence: GAKAGKTGGCTCWG

Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 2.08921

Alignment:
----TGAMCTTTGMMCYT
VHRGGTCABDBTGMCCTB

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3 Motif ID: 60 Motif name: NR1H2RXRA

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Best Matches for Motif ID 60 (Highest to Lowest)

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 17
Similarity score: 0.0911991

Alignment:
GGYGCTGTCCATGGTGCTGAA
---GTTGACCTTTGACCTTT-

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 1.05945

Alignment:
BTRGGDCARAGGKCA--
AAAGGTCAAAGGTCAAC

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 2.0701

Alignment:
AAAGRTMAAACTA----
AAAGGTCAAAGGTCAAC

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 13
Similarity score: 2.08514

Alignment:
----VDBHMAGGTCACCCTGACCY
AAAGGTCAAAGGTCAAC-------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 1
Motif ID: 22
Motif name: Motif 22
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 2.58792

Alignment:
-----TTTATGGTGAGCAT
AAAGGTCAAAGGTCAAC--

Original motif     Consensus sequence: TTTATGGTGAGCAT Reverse complement motif     Consensus sequence: ATGCTCACCATAAA

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 12
Similarity score: 2.58894

Alignment:
RAGKGMAGVRRGSRCASAGV-----
--------AAAGGTCAAAGGTCAAC

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 1
Motif ID: 16
Motif name: Motif 16
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 2.59792

Alignment:
-----TWTTGACAYAGA
AAAGGTCAAAGGTCAAC

Original motif     Consensus sequence: TCTKTGTCAAWA Reverse complement motif     Consensus sequence: TWTTGACAYAGA

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 13
Number of overlap: 12
Similarity score: 2.59961

Alignment:
AGTGCTCCACTGTGGTGTCACAGT-----
------------AAAGGTCAAAGGTCAAC

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 2.59967

Alignment:
ACTGTGGTGTCACART-----
----AAAGGTCAAAGGTCAAC

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Dataset #: 1
Motif ID: 18
Motif name: Motif 18
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 3.05261

Alignment:
------CAAAGTCCAGC
AAAGGTCAAAGGTCAAC

Original motif     Consensus sequence: CAAAGTCCAGC Reverse complement motif     Consensus sequence: GCTGGACTTTG

Dataset #: 3 Motif ID: 61 Motif name: NR4A2

Original motif     Consensus sequence: AAGGTCAC Reverse complement motif     Consensus sequence: GTGACCTT

Best Matches for Motif ID 61 (Highest to Lowest)

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0167759

Alignment:
AAAGGTCAAAGGTCAAC
-AAGGTCAC--------

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0195235

Alignment:
VDBHMAGGTCACCCTGACCY
----AAGGTCAC--------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0198372

Alignment:
VHRGGTCABDBTGMCCTB
-AAGGTCAC---------

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 1
Motif ID: 17
Motif name: Motif 17
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0393171

Alignment:
CTTCTGACCTC
GTGACCTT---

Original motif     Consensus sequence: CTTCTGACCTC Reverse complement motif     Consensus sequence: GAGGTCAGAAG

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.040519

Alignment:
AAAGRTMAAACTA
-AAGGTCAC----

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0495607

Alignment:
BTRGGDCARAGGKCA
-AAGGTCAC------

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 1
Motif ID: 24
Motif name: Motif 24
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0539119

Alignment:
TTWATGWCTTT
---GTGACCTT

Original motif     Consensus sequence: AAAGWCATWAA Reverse complement motif     Consensus sequence: TTWATGWCTTT

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0557243

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
------AAGGTCAC-----------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0564874

Alignment:
AKGYYCAAAGRTCA
------AAGGTCAC

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 1
Motif ID: 35
Motif name: Motif 35
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0566591

Alignment:
AGATGYTCTTG
-GTGACCTT--

Original motif     Consensus sequence: AGATGYTCTTG Reverse complement motif     Consensus sequence: CAAGAKCATCT

Dataset #: 3 Motif ID: 62 Motif name: RORA_1

Original motif     Consensus sequence: AWVDAGGTCA Reverse complement motif     Consensus sequence: TGACCTDVWT

Best Matches for Motif ID 62 (Highest to Lowest)

Dataset #: 3
Motif ID: 54
Motif name: Esrrb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.053151

Alignment:
VBBYCAAGGTCA
--AWVDAGGTCA

Original motif     Consensus sequence: VBBYCAAGGTCA Reverse complement motif     Consensus sequence: TGACCTTGMBBB

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0655351

Alignment:
MGGTCAGGGTGACCTRDBHV
---------TGACCTDVWT-

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.078

Alignment:
AAAGGTCAAAGGTCAAC
-----AWVDAGGTCA--

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0892308

Alignment:
TGAMCTTTGMMCYT
----TGACCTDVWT

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.09043

Alignment:
BTRGGDCARAGGKCA
-----AWVDAGGTCA

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 10
Similarity score: 0.0993108

Alignment:
TTCAGCACCATGGACAGCKCC
------AWVDAGGTCA-----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.103528

Alignment:
CTGCTGBDBBDGBD
----TGACCTDVWT

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 3
Motif ID: 51
Motif name: HNF4A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.10409

Alignment:
RGGBCAAAGKYCA
---AWVDAGGTCA

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.106859

Alignment:
RAGKGMAGVRRGSRCASAGV
------AWVDAGGTCA----

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 1
Motif ID: 22
Motif name: Motif 22
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.111

Alignment:
ATGCTCACCATAAA
----TGACCTDVWT

Original motif     Consensus sequence: TTTATGGTGAGCAT Reverse complement motif     Consensus sequence: ATGCTCACCATAAA

Dataset #: 3 Motif ID: 63 Motif name: MIZF

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV

Best Matches for Motif ID 63 (Highest to Lowest)

Dataset #: 1
Motif ID: 18
Motif name: Motif 18
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0591071

Alignment:
CAAAGTCCAGC
BAACGTCCGC-

Original motif     Consensus sequence: CAAAGTCCAGC Reverse complement motif     Consensus sequence: GCTGGACTTTG

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0605777

Alignment:
BAGGYCABHBTGACCKHV
--------GCGGACGTTV

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 10
Similarity score: 0.0614567

Alignment:
VDBHMAGGTCACCCTGACCY
---BAACGTCCGC-------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0646071

Alignment:
AAAGGTCAAAGGTCAAC
-------BAACGTCCGC

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 4
Motif ID: 82
Motif name: gCGCGCsCgsG
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0651598

Alignment:
GCGCGCSCGCG
BAACGTCCGC-

Original motif     Consensus sequence: GCGCGCSCGCG Reverse complement motif     Consensus sequence: CGCGSGCGCGC

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 10
Similarity score: 0.0697767

Alignment:
BMSMGCCYMCTKSTGGMHM
BAACGTCCGC---------

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0708149

Alignment:
GGYGCTGTCCATGGTGCTGAA
---------BAACGTCCGC--

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0753571

Alignment:
CTGCTGBDBBDGBD
--GCGGACGTTV--

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 10
Similarity score: 0.0780684

Alignment:
VCTSTGKSCMKBCTRCYCTK
------BAACGTCCGC----

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 1
Motif ID: 1
Motif name: Motif 1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0797585

Alignment:
CYTSCCTCTGC
-BAACGTCCGC

Original motif     Consensus sequence: CYTSCCTCTGC Reverse complement motif     Consensus sequence: GCAGAGGSAKG

Dataset #: 3 Motif ID: 64 Motif name: PPARGRXRA

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Best Matches for Motif ID 64 (Highest to Lowest)

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.0442974

Alignment:
AAAGGTCAAAGGTCAAC
BTRGGDCARAGGKCA--

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 15
Similarity score: 0.0602408

Alignment:
VHRGGTCABDBTGMCCTB
BTRGGDCARAGGKCA---

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 15
Similarity score: 0.0615418

Alignment:
RAGKGMAGVRRGSRCASAGV
-BTRGGDCARAGGKCA----

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.0723092

Alignment:
VDBHMAGGTCACCCTGACCY
---BTRGGDCARAGGKCA--

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 15
Similarity score: 0.0741352

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
-----BTRGGDCARAGGKCA-----

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0786357

Alignment:
YDRCCASYAGRKGGCRSYV
-BTRGGDCARAGGKCA---

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 15
Similarity score: 0.0790185

Alignment:
CHHCHBTCCTSCYTCTGC
TGRCCTKTGHCCKAB---

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0796159

Alignment:
TTCAGCACCATGGACAGCKCC
-BTRGGDCARAGGKCA-----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 15
Similarity score: 0.0813414

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
------BTRGGDCARAGGKCA---

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 15
Similarity score: 0.0818655

Alignment:
TGTGGTGTCACAGTGCTCC
--BTRGGDCARAGGKCA--

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 3 Motif ID: 65 Motif name: Tcfcp2l1

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Best Matches for Motif ID 65 (Highest to Lowest)

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0453398

Alignment:
MGGTCAGGGTGACCTRDBHV
---CCAGYYHVADCCRG---

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0491111

Alignment:
YDRCCASYAGRKGGCRSYV
---CCAGYYHVADCCRG--

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0502168

Alignment:
VCTSTGKSCMKBCTRCYCTK
-CCAGYYHVADCCRG-----

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0514558

Alignment:
GCAGAKGSAGGABDGHDG
----CKGGDTBDMMCTGG

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0546308

Alignment:
HVCDBBDBCAGCAG
CCAGYYHVADCCRG

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0568174

Alignment:
VHRGGTCABDBTGMCCTB
----CKGGDTBDMMCTGG

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0569399

Alignment:
TGRCCTKTGHCCKAB
-CKGGDTBDMMCTGG

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 1
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.542892

Alignment:
CTSTGTBKMCTGH-
CKGGDTBDMMCTGG

Original motif     Consensus sequence: HCAGRRVACASAG Reverse complement motif     Consensus sequence: CTSTGTBKMCTGH

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.546848

Alignment:
GAKAGKTGGCTCWG-
-CKGGDTBDMMCTGG

Original motif     Consensus sequence: CWGAGCCAYCTYTC Reverse complement motif     Consensus sequence: GAKAGKTGGCTCWG

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 13
Similarity score: 0.551995

Alignment:
ABCACAGTGGAGCACTG-
----CKGGDTBDMMCTGG

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 3 Motif ID: 66 Motif name: CTCF

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Best Matches for Motif ID 66 (Highest to Lowest)

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 19
Similarity score: 0.066318

Alignment:
VCTSTGKSCMKBCTRCYCTK
BMSMGCCYMCTKSTGGMHM-

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 19
Similarity score: 0.0687764

Alignment:
MGGTCAGGGTGACCTRDBHV
-YDRCCASYAGRKGGCRSYV

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 18
Similarity score: 0.566688

Alignment:
ACTGTGACACCACAGTGGAGCACT-
------YDRCCASYAGRKGGCRSYV

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 18
Similarity score: 0.56949

Alignment:
-AGTGSWSCACTGTGAMAMCACAGTG
BMSMGCCYMCTKSTGGMHM-------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.571172

Alignment:
-CHHCHBTCCTSCYTCTGC
BMSMGCCYMCTKSTGGMHM

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 1.05559

Alignment:
--ABCACAGTGGAGCACTG
YDRCCASYAGRKGGCRSYV

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 2.06507

Alignment:
----CAHCACAGTGGAGCACT
YDRCCASYAGRKGGCRSYV--

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 15
Similarity score: 2.07021

Alignment:
TGGAGCACTGTGACAVCACAGTGG----
---------YDRCCASYAGRKGGCRSYV

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 2.54791

Alignment:
-----CWGAGCCAYCTYTC
BMSMGCCYMCTKSTGGMHM

Original motif     Consensus sequence: CWGAGCCAYCTYTC Reverse complement motif     Consensus sequence: GAKAGKTGGCTCWG

Dataset #: 2
Motif ID: 47
Motif name: Motif 47
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 2.56483

Alignment:
KCCASDAGGTGGCK-----
YDRCCASYAGRKGGCRSYV

Original motif     Consensus sequence: YGCCACCTDSTGGY Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK

Dataset #: 4 Motif ID: 67 Motif name: TgTGgTGTCACAGTGCTCC

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Best Matches for Motif ID 67 (Highest to Lowest)

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 19
Similarity score: 0

Alignment:
TGGAGCACTGTGACAVCACAGTGG
-GGAGCACTGTGACACCACA----

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 19
Similarity score: 0.0217259

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
---TGTGGTGTCACAGTGCTCC---

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 19
Similarity score: 0.074816

Alignment:
ACTGTGACACCACAGTGGAGCACT
--TGTGGTGTCACAGTGCTCC---

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 19
Similarity score: 0.0857262

Alignment:
VDBHMAGGTCACCCTGACCY
-TGTGGTGTCACAGTGCTCC

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.595281

Alignment:
-RAGKGMAGVRRGSRCASAGV
GGAGCACTGTGACACCACA--

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 17
Similarity score: 1.08001

Alignment:
--VHRGGTCABDBTGMCCTB
TGTGGTGTCACAGTGCTCC-

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 17
Similarity score: 1.08847

Alignment:
CAGTGCTCCACTGTGBT--
TGTGGTGTCACAGTGCTCC

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 1.59452

Alignment:
ACTGTGGTGTCACART---
GGAGCACTGTGACACCACA

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Dataset #: 5
Motif ID: 92
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 16
Similarity score: 1.60014

Alignment:
---TGTGTGDKTGTGTGTGTRTG
TGTGGTGTCACAGTGCTCC----

Original motif     Consensus sequence: CAMACACACACAYDCACACA Reverse complement motif     Consensus sequence: TGTGTGDKTGTGTGTGTRTG

Dataset #: 5
Motif ID: 89
Motif name: TFM1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 16
Similarity score: 1.60282

Alignment:
---TGTGTGWGTGTGTGTGTG
TGTGGTGTCACAGTGCTCC--

Original motif     Consensus sequence: CACACACACACWCACACA Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG

Dataset #: 4 Motif ID: 68 Motif name: sscCCCGCGcs

Original motif     Consensus sequence: BSCCCCGCGBS Reverse complement motif     Consensus sequence: SBCGCGGGGSB

Best Matches for Motif ID 68 (Highest to Lowest)

Dataset #: 4
Motif ID: 74
Motif name: ssCCCCGCSssk
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0

Alignment:
SBCCCCGCCSBB
BSCCCCGCGBS-

Original motif     Consensus sequence: SBCCCCGCCSBB Reverse complement motif     Consensus sequence: BBSGGCGGGGBS

Dataset #: 4
Motif ID: 82
Motif name: gCGCGCsCgsG
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0417227

Alignment:
CGCGSGCGCGC
SBCGCGGGGSB

Original motif     Consensus sequence: GCGCGCSCGCG Reverse complement motif     Consensus sequence: CGCGSGCGCGC

Dataset #: 4
Motif ID: 78
Motif name: ssGCkTGCssk
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0523123

Alignment:
SSGCKTGCSSK
BSCCCCGCGBS

Original motif     Consensus sequence: SSGCKTGCSSK Reverse complement motif     Consensus sequence: YSSGCAYGCSS

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 11
Similarity score: 0.0564004

Alignment:
YDRCCASYAGRKGGCRSYV
--SBCGCGGGGSB------

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0666605

Alignment:
CHHCHBTCCTSCYTCTGC
----BSCCCCGCGBS---

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0677432

Alignment:
RAGKGMAGVRRGSRCASAGV
----SBCGCGGGGSB-----

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0734979

Alignment:
MGGTCAGGGTGACCTRDBHV
BSCCCCGCGBS---------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4
Motif ID: 79
Motif name: cCGCGGrCACG
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0757081

Alignment:
CCGCGGRCACG
BSCCCCGCGBS

Original motif     Consensus sequence: CCGCGGRCACG Reverse complement motif     Consensus sequence: CGTGKCCGCGG

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0758097

Alignment:
GGYGCTGTCCATGGTGCTGAA
SBCGCGGGGSB----------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 1
Motif ID: 1
Motif name: Motif 1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0788714

Alignment:
GCAGAGGSAKG
SBCGCGGGGSB

Original motif     Consensus sequence: CYTSCCTCTGC Reverse complement motif     Consensus sequence: GCAGAGGSAKG

Dataset #: 4 Motif ID: 69 Motif name: atactttggc

Original motif     Consensus sequence: ATACTTTGGC Reverse complement motif     Consensus sequence: GCCAAAGTAT

Best Matches for Motif ID 69 (Highest to Lowest)

Dataset #: 4
Motif ID: 75
Motif name: wwCCAmAGTCmt
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0840909

Alignment:
DDCCAMAGTCHB
-GCCAAAGTAT-

Original motif     Consensus sequence: DDCCAMAGTCHB Reverse complement motif     Consensus sequence: VDGACTRTGGDD

Dataset #: 4
Motif ID: 80
Motif name: taaacgatgcc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.1

Alignment:
GGCATCGTTTA
GCCAAAGTAT-

Original motif     Consensus sequence: TAAACGATGCC Reverse complement motif     Consensus sequence: GGCATCGTTTA

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.102

Alignment:
AAAGGTCAAAGGTCAAC
---GCCAAAGTAT----

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 10
Similarity score: 0.109722

Alignment:
GGAGCACTGTGACACCACA
------ATACTTTGGC---

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 10
Similarity score: 0.109921

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
---------GCCAAAGTAT------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 3
Motif ID: 51
Motif name: HNF4A
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.110821

Alignment:
TGMYCTTTGBCCK
--ATACTTTGGC-

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.111538

Alignment:
TGAMCTTTGMMCYT
-ATACTTTGGC---

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 11
Number of overlap: 10
Similarity score: 0.111824

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
----------GCCAAAGTAT----

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 10
Similarity score: 0.112324

Alignment:
ACTGTGACACCACAGTGGAGCACT
--------GCCAAAGTAT------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.1125

Alignment:
AAAMATTGTTT
ATACTTTGGC-

Original motif     Consensus sequence: AAAMATTGTTT Reverse complement motif     Consensus sequence: AAACAATYTTT

Dataset #: 4 Motif ID: 70 Motif name: CagTGCTCCACTGTGgT

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Best Matches for Motif ID 70 (Highest to Lowest)

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0957051

Alignment:
BMSMGCCYMCTKSTGGMHM
--CAGTGCTCCACTGTGBT

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 17
Similarity score: 0.0975871

Alignment:
TTCAGCACCATGGACAGCKCC
-ABCACAGTGGAGCACTG---

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 17
Similarity score: 0.0980868

Alignment:
TGTGGTGTCACAGTGCTCC
CAGTGCTCCACTGTGBT--

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 17
Similarity score: 0.099784

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
-----ABCACAGTGGAGCACTG--

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 17
Similarity score: 0.104226

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
-----ABCACAGTGGAGCACTG---

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 17
Similarity score: 0.107548

Alignment:
TGGAGCACTGTGACAVCACAGTGG
---ABCACAGTGGAGCACTG----

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.5

Alignment:
-AGTGCTCCACTGTGDTG
CAGTGCTCCACTGTGBT-

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.607943

Alignment:
-AMTGTGACACCACAGT
CAGTGCTCCACTGTGBT

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Dataset #: 2
Motif ID: 47
Motif name: Motif 47
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 1.59821

Alignment:
---YGCCACCTDSTGGY
CAGTGCTCCACTGTGBT

Original motif     Consensus sequence: YGCCACCTDSTGGY Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 13
Similarity score: 2.09999

Alignment:
VCTSTGKSCMKBCTRCYCTK----
-------CAGTGCTCCACTGTGBT

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 4 Motif ID: 71 Motif name: AmTGTGACACCACAGT

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Best Matches for Motif ID 71 (Highest to Lowest)

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.00066365

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
--------ACTGTGGTGTCACART

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 16
Similarity score: 0.00238202

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
--ACTGTGGTGTCACART------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0203916

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
-ACTGTGGTGTCACART--------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 16
Similarity score: 0.0957574

Alignment:
GGAGCACTGTGACACCACA
ACTGTGGTGTCACART---

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0995605

Alignment:
CAGTGCTCCACTGTGBT
-AMTGTGACACCACAGT

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 16
Similarity score: 0.10061

Alignment:
RAGKGMAGVRRGSRCASAGV
----AMTGTGACACCACAGT

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.102539

Alignment:
AGTGCTCCACTGTGDTG
AMTGTGACACCACAGT-

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 15
Similarity score: 0.595756

Alignment:
-MGGTCAGGGTGACCTRDBHV
AMTGTGACACCACAGT-----

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 14
Similarity score: 1.10257

Alignment:
--GGYGCTGTCCATGGTGCTGAA
ACTGTGGTGTCACART-------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 1.59198

Alignment:
HVCDBBDBCAGCAG---
-AMTGTGACACCACAGT

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 4 Motif ID: 72 Motif name: CACTGTGrYrtCACAGTGswsCAcT

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Best Matches for Motif ID 72 (Highest to Lowest)

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 24
Similarity score: 0.0299166

Alignment:
-ACTGTGACACCACAGTGGAGCACT
CACTGTGRTRTCACAGTGSWSCACT

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 23
Similarity score: 0.506166

Alignment:
--TGGAGCACTGTGACAVCACAGTGG
AGTGSWSCACTGTGAMAMCACAGTG-

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 19
Similarity score: 2.59185

Alignment:
RAGKGMAGVRRGSRCASAGV------
-AGTGSWSCACTGTGAMAMCACAGTG

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 3.08766

Alignment:
MGGTCAGGGTGACCTRDBHV-------
--CACTGTGRTRTCACAGTGSWSCACT

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 18
Similarity score: 3.09362

Alignment:
BMSMGCCYMCTKSTGGMHM-------
-AGTGSWSCACTGTGAMAMCACAGTG

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 18
Similarity score: 3.09504

Alignment:
GGAGCACTGTGACACCACA-------
-CACTGTGRTRTCACAGTGSWSCACT

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 3.52969

Alignment:
--------CAHCACAGTGGAGCACT
CACTGTGRTRTCACAGTGSWSCACT

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 4.02785

Alignment:
---------CAGTGCTCCACTGTGBT
AGTGSWSCACTGTGAMAMCACAGTG-

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 15
Similarity score: 4.59058

Alignment:
----------CHHCHBTCCTSCYTCTGC
CACTGTGRTRTCACAGTGSWSCACT---

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 13
Similarity score: 5.58821

Alignment:
VHRGGTCABDBTGMCCTB------------
-----AGTGSWSCACTGTGAMAMCACAGTG

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 4 Motif ID: 73 Motif name: TGGAGCACTGTGACAcCACAGTGg

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Best Matches for Motif ID 73 (Highest to Lowest)

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 23
Similarity score: 0.0136536

Alignment:
CACTGTGRTRTCACAGTGSWSCACT-
--CCACTGTGVTGTCACAGTGCTCCA

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 22
Similarity score: 0.560082

Alignment:
--ACTGTGACACCACAGTGGAGCACT
CCACTGTGVTGTCACAGTGCTCCA--

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 2.5833

Alignment:
------BAGGYCABHBTGACCKHV
TGGAGCACTGTGACAVCACAGTGG

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 2.60363

Alignment:
CHHCHBTCCTSCYTCTGC------
CCACTGTGVTGTCACAGTGCTCCA

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 17
Similarity score: 3.10239

Alignment:
MGGTCAGGGTGACCTRDBHV-------
---CCACTGTGVTGTCACAGTGCTCCA

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 17
Similarity score: 3.10268

Alignment:
RAGKGMAGVRRGSRCASAGV-------
---TGGAGCACTGTGACAVCACAGTGG

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 16
Similarity score: 3.56015

Alignment:
GGAGCACTGTGACACCACA--------
---CCACTGTGVTGTCACAGTGCTCCA

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 3.58845

Alignment:
ABCACAGTGGAGCACTG--------
-CCACTGTGVTGTCACAGTGCTCCA

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 15
Similarity score: 4.07113

Alignment:
AGTGCTCCACTGTGDTG---------
--TGGAGCACTGTGACAVCACAGTGG

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 15
Similarity score: 4.10183

Alignment:
---------YDRCCASYAGRKGGCRSYV
TGGAGCACTGTGACAVCACAGTGG----

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 4 Motif ID: 74 Motif name: ssCCCCGCSssk

Original motif     Consensus sequence: SBCCCCGCCSBB Reverse complement motif     Consensus sequence: BBSGGCGGGGBS

Best Matches for Motif ID 74 (Highest to Lowest)

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0606622

Alignment:
CHHCHBTCCTSCYTCTGC
----SBCCCCGCCSBB--

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.063076

Alignment:
MGGTCAGGGTGACCTRDBHV
-------BBSGGCGGGGBS-

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0642087

Alignment:
YDRCCASYAGRKGGCRSYV
-BBSGGCGGGGBS------

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0671548

Alignment:
TGRCCTKTGHCCKAB
-SBCCCCGCCSBB--

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 12
Similarity score: 0.0674545

Alignment:
RAGKGMAGVRRGSRCASAGV
---BBSGGCGGGGBS-----

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0734481

Alignment:
BAGGYCABHBTGACCKHV
-SBCCCCGCCSBB-----

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 12
Similarity score: 0.0751084

Alignment:
TTCAGCACCATGGACAGCKCC
BBSGGCGGGGBS---------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 2
Motif ID: 47
Motif name: Motif 47
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.078885

Alignment:
YGCCACCTDSTGGY
SBCCCCGCCSBB--

Original motif     Consensus sequence: YGCCACCTDSTGGY Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK

Dataset #: 4
Motif ID: 68
Motif name: sscCCCGCGcs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.5

Alignment:
-SBCGCGGGGSB
BBSGGCGGGGBS

Original motif     Consensus sequence: BSCCCCGCGBS Reverse complement motif     Consensus sequence: SBCGCGGGGSB

Dataset #: 4
Motif ID: 82
Motif name: gCGCGCsCgsG
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.548902

Alignment:
GCGCGCSCGCG-
SBCCCCGCCSBB

Original motif     Consensus sequence: GCGCGCSCGCG Reverse complement motif     Consensus sequence: CGCGSGCGCGC

Dataset #: 4 Motif ID: 75 Motif name: wwCCAmAGTCmt

Original motif     Consensus sequence: DDCCAMAGTCHB Reverse complement motif     Consensus sequence: VDGACTRTGGDD

Best Matches for Motif ID 75 (Highest to Lowest)

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 12
Similarity score: 0.0656866

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
--------DDCCAMAGTCHB-----

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 12
Similarity score: 0.0676046

Alignment:
ABCACAGTGGAGCACTG
VDGACTRTGGDD-----

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 12
Similarity score: 0.0684312

Alignment:
AGTGCTCCACTGTGDTG
-----VDGACTRTGGDD

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 12
Similarity score: 0.0695137

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
-----VDGACTRTGGDD-------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 3
Motif ID: 51
Motif name: HNF4A
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0717637

Alignment:
RGGBCAAAGKYCA
-DDCCAMAGTCHB

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 5
Motif ID: 92
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 12
Similarity score: 0.0751124

Alignment:
CAMACACACACAYDCACACA
-DDCCAMAGTCHB-------

Original motif     Consensus sequence: CAMACACACACAYDCACACA Reverse complement motif     Consensus sequence: TGTGTGDKTGTGTGTGTRTG

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.075392

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
---DDCCAMAGTCHB---------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0784446

Alignment:
GGYGCTGTCCATGGTGCTGAA
---DDCCAMAGTCHB------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0786999

Alignment:
TGTGGTGTCACAGTGCTCC
-----DDCCAMAGTCHB--

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0800522

Alignment:
VDBHMAGGTCACCCTGACCY
DDCCAMAGTCHB--------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4 Motif ID: 76 Motif name: CAcCACAGTGGAGCAct

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

Best Matches for Motif ID 76 (Highest to Lowest)

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 17
Similarity score: 0.00742502

Alignment:
ACTGTGACACCACAGTGGAGCACT
-------CAHCACAGTGGAGCACT

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0456803

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
--------CAHCACAGTGGAGCACT

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 17
Similarity score: 0.0894884

Alignment:
TTCAGCACCATGGACAGCKCC
--CAHCACAGTGGAGCACT--

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 17
Similarity score: 0.0962536

Alignment:
GGAGCACTGTGACACCACA
-CAHCACAGTGGAGCACT-

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 17
Similarity score: 0.0978126

Alignment:
YDRCCASYAGRKGGCRSYV
-CAHCACAGTGGAGCACT-

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 17
Similarity score: 0.106708

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
-----AGTGCTCCACTGTGDTG--

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 0.5

Alignment:
-CAGTGCTCCACTGTGBT
AGTGCTCCACTGTGDTG-

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.610921

Alignment:
ACTGTGGTGTCACART-
CAHCACAGTGGAGCACT

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Dataset #: 4
Motif ID: 75
Motif name: wwCCAmAGTCmt
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 2.5839

Alignment:
-----VDGACTRTGGDD
AGTGCTCCACTGTGDTG

Original motif     Consensus sequence: DDCCAMAGTCHB Reverse complement motif     Consensus sequence: VDGACTRTGGDD

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 12
Similarity score: 2.60274

Alignment:
VCTSTGKSCMKBCTRCYCTK-----
--------AGTGCTCCACTGTGDTG

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 4 Motif ID: 77 Motif name: AgTGCTCCACTGTGgTGTCACAgT

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Best Matches for Motif ID 77 (Highest to Lowest)

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 24
Similarity score: 0.0409586

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
-AGTGCTCCACTGTGGTGTCACAGT

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 22
Similarity score: 1.06364

Alignment:
CCACTGTGVTGTCACAGTGCTCCA--
--ACTGTGACACCACAGTGGAGCACT

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 19
Similarity score: 2.59599

Alignment:
TTCAGCACCATGGACAGCKCC-----
--ACTGTGACACCACAGTGGAGCACT

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 3.10123

Alignment:
------GGAGCACTGTGACACCACA
ACTGTGACACCACAGTGGAGCACT-

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 18
Similarity score: 3.10186

Alignment:
------BMSMGCCYMCTKSTGGMHM
AGTGCTCCACTGTGGTGTCACAGT-

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 3.50248

Alignment:
-------AGTGCTCCACTGTGDTG
AGTGCTCCACTGTGGTGTCACAGT

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 16
Similarity score: 4

Alignment:
--------ABCACAGTGGAGCACTG
ACTGTGACACCACAGTGGAGCACT-

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 4.0041

Alignment:
ACTGTGGTGTCACART--------
AGTGCTCCACTGTGGTGTCACAGT

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 16
Similarity score: 4.10485

Alignment:
RAGKGMAGVRRGSRCASAGV--------
----ACTGTGACACCACAGTGGAGCACT

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 15
Similarity score: 4.59996

Alignment:
MGGTCAGGGTGACCTRDBHV---------
-----ACTGTGACACCACAGTGGAGCACT

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4 Motif ID: 78 Motif name: ssGCkTGCssk

Original motif     Consensus sequence: SSGCKTGCSSK Reverse complement motif     Consensus sequence: YSSGCAYGCSS

Best Matches for Motif ID 78 (Highest to Lowest)

Dataset #: 4
Motif ID: 82
Motif name: gCGCGCsCgsG
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0230178

Alignment:
GCGCGCSCGCG
SSGCKTGCSSK

Original motif     Consensus sequence: GCGCGCSCGCG Reverse complement motif     Consensus sequence: CGCGSGCGCGC

Dataset #: 4
Motif ID: 74
Motif name: ssCCCCGCSssk
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.036087

Alignment:
BBSGGCGGGGBS
-YSSGCAYGCSS

Original motif     Consensus sequence: SBCCCCGCCSBB Reverse complement motif     Consensus sequence: BBSGGCGGGGBS

Dataset #: 4
Motif ID: 68
Motif name: sscCCCGCGcs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0375477

Alignment:
SBCGCGGGGSB
YSSGCAYGCSS

Original motif     Consensus sequence: BSCCCCGCGBS Reverse complement motif     Consensus sequence: SBCGCGGGGSB

Dataset #: 4
Motif ID: 79
Motif name: cCGCGGrCACG
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0461039

Alignment:
CCGCGGRCACG
SSGCKTGCSSK

Original motif     Consensus sequence: CCGCGGRCACG Reverse complement motif     Consensus sequence: CGTGKCCGCGG

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0529221

Alignment:
CTGCTTTCCMAA
SSGCKTGCSSK-

Original motif     Consensus sequence: CTGCTTTCCMAA Reverse complement motif     Consensus sequence: TTYGGAAAGCAG

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 11
Similarity score: 0.0533963

Alignment:
YDRCCASYAGRKGGCRSYV
-------SSGCKTGCSSK-

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 3
Motif ID: 54
Motif name: Esrrb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0543224

Alignment:
VBBYCAAGGTCA
-YSSGCAYGCSS

Original motif     Consensus sequence: VBBYCAAGGTCA Reverse complement motif     Consensus sequence: TGACCTTGMBBB

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0563598

Alignment:
VHRGGTCABDBTGMCCTB
-----YSSGCAYGCSS--

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 11
Similarity score: 0.0593846

Alignment:
TTCAGCACCATGGACAGCKCC
-YSSGCAYGCSS---------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0598714

Alignment:
BTRGGDCARAGGKCA
--YSSGCAYGCSS--

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 4 Motif ID: 79 Motif name: cCGCGGrCACG

Original motif     Consensus sequence: CCGCGGRCACG Reverse complement motif     Consensus sequence: CGTGKCCGCGG

Best Matches for Motif ID 79 (Highest to Lowest)

Dataset #: 4
Motif ID: 82
Motif name: gCGCGCsCgsG
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.010473

Alignment:
GCGCGCSCGCG
CCGCGGRCACG

Original motif     Consensus sequence: GCGCGCSCGCG Reverse complement motif     Consensus sequence: CGCGSGCGCGC

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0478408

Alignment:
HVCDBBDBCAGCAG
---CGTGKCCGCGG

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0484441

Alignment:
TTCAGCACCATGGACAGCKCC
-------CCGCGGRCACG---

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0486581

Alignment:
MGGTCAGGGTGACCTRDBHV
-------CGTGKCCGCGG--

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4
Motif ID: 78
Motif name: ssGCkTGCssk
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0503056

Alignment:
SSGCKTGCSSK
CCGCGGRCACG

Original motif     Consensus sequence: SSGCKTGCSSK Reverse complement motif     Consensus sequence: YSSGCAYGCSS

Dataset #: 4
Motif ID: 74
Motif name: ssCCCCGCSssk
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.055777

Alignment:
BBSGGCGGGGBS
CGTGKCCGCGG-

Original motif     Consensus sequence: SBCCCCGCCSBB Reverse complement motif     Consensus sequence: BBSGGCGGGGBS

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0588663

Alignment:
YDRCCASYAGRKGGCRSYV
-------CCGCGGRCACG-

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 1
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0597806

Alignment:
HCAGRRVACASAG
-CCGCGGRCACG-

Original motif     Consensus sequence: HCAGRRVACASAG Reverse complement motif     Consensus sequence: CTSTGTBKMCTGH

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0624268

Alignment:
GTGTGTGTGTGTGT
-CGTGKCCGCGG--

Original motif     Consensus sequence: ACACACACACACAC Reverse complement motif     Consensus sequence: GTGTGTGTGTGTGT

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0625015

Alignment:
RAGKGMAGVRRGSRCASAGV
-----CCGCGGRCACG----

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 4 Motif ID: 80 Motif name: taaacgatgcc

Original motif     Consensus sequence: TAAACGATGCC Reverse complement motif     Consensus sequence: GGCATCGTTTA

Best Matches for Motif ID 80 (Highest to Lowest)

Dataset #: 1
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.102273

Alignment:
TATKCTAAACCTAT
---TAAACGATGCC

Original motif     Consensus sequence: ATAGGTTTAGYATA Reverse complement motif     Consensus sequence: TATKCTAAACCTAT

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.113636

Alignment:
ATGTWTTCATTMAT
-GGCATCGTTTA--

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.113636

Alignment:
AAAGGTCAAAGGTCAAC
--GGCATCGTTTA----

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 1
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.113636

Alignment:
AACATATTTTCA
-GGCATCGTTTA

Original motif     Consensus sequence: AACATATTTTCA Reverse complement motif     Consensus sequence: TGAAAATATGTT

Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.118881

Alignment:
TGAMCTTTGMMCYT
TAAACGATGCC---

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 1
Motif ID: 11
Motif name: Motif 11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.125

Alignment:
TTYAAACATYTT
TAAACGATGCC-

Original motif     Consensus sequence: AAMATGTTTMAA Reverse complement motif     Consensus sequence: TTYAAACATYTT

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.125

Alignment:
TAASTCTWTTTTAA
-GGCATCGTTTA--

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 1
Motif ID: 10
Motif name: Motif 10
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.5875

Alignment:
AAACAATYTTT-
-TAAACGATGCC

Original motif     Consensus sequence: AAAMATTGTTT Reverse complement motif     Consensus sequence: AAACAATYTTT

Dataset #: 1
Motif ID: 30
Motif name: Motif 30
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.6

Alignment:
AAAAGCAGCAA-
-TAAACGATGCC

Original motif     Consensus sequence: TTGCTGCTTTT Reverse complement motif     Consensus sequence: AAAAGCAGCAA

Dataset #: 4
Motif ID: 69
Motif name: atactttggc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.6

Alignment:
-ATACTTTGGC
TAAACGATGCC

Original motif     Consensus sequence: ATACTTTGGC Reverse complement motif     Consensus sequence: GCCAAAGTAT

Dataset #: 4 Motif ID: 81 Motif name: ctatacggacg

Original motif     Consensus sequence: CTATACGGACG Reverse complement motif     Consensus sequence: CGTCCGTATAG

Best Matches for Motif ID 81 (Highest to Lowest)

Dataset #: 1
Motif ID: 27
Motif name: Motif 27
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.102273

Alignment:
CTTKACAGAAT
CTATACGGACG

Original motif     Consensus sequence: ATTCTGTRAAG Reverse complement motif     Consensus sequence: CTTKACAGAAT

Dataset #: 4
Motif ID: 83
Motif name: srACyCCGAyr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.125

Alignment:
SRACYCCGAYR
CTATACGGACG

Original motif     Consensus sequence: SRACYCCGAYR Reverse complement motif     Consensus sequence: KKTCGGKGTKS

Dataset #: 1
Motif ID: 46
Motif name: Motif 46
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.6

Alignment:
ATAGGTTTAGYATA-
----CGTCCGTATAG

Original motif     Consensus sequence: ATAGGTTTAGYATA Reverse complement motif     Consensus sequence: TATKCTAAACCTAT

Dataset #: 5
Motif ID: 89
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 10
Similarity score: 0.624107

Alignment:
TGTGTGWGTGTGTGTGTG-
--------CGTCCGTATAG

Original motif     Consensus sequence: CACACACACACWCACACA Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG

Dataset #: 1
Motif ID: 20
Motif name: Motif 20
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.625

Alignment:
-TCCTCCTGGAA
CGTCCGTATAG-

Original motif     Consensus sequence: TCCTCCTGGAA Reverse complement motif     Consensus sequence: TTCCAGGAGGA

Dataset #: 1
Motif ID: 28
Motif name: Motif 28
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.625

Alignment:
-ATTTAGTAAA
CGTCCGTATAG

Original motif     Consensus sequence: ATTTAGTAAA Reverse complement motif     Consensus sequence: TTTACTAAAT

Dataset #: 1
Motif ID: 22
Motif name: Motif 22
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.625

Alignment:
ATGCTCACCATAAA-
----CGTCCGTATAG

Original motif     Consensus sequence: TTTATGGTGAGCAT Reverse complement motif     Consensus sequence: ATGCTCACCATAAA

Dataset #: 4
Motif ID: 80
Motif name: taaacgatgcc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.625

Alignment:
GGCATCGTTTA-
-CGTCCGTATAG

Original motif     Consensus sequence: TAAACGATGCC Reverse complement motif     Consensus sequence: GGCATCGTTTA

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 9
Similarity score: 1.09722

Alignment:
--TTYGGAAAGCAG
CGTCCGTATAG---

Original motif     Consensus sequence: CTGCTTTCCMAA Reverse complement motif     Consensus sequence: TTYGGAAAGCAG

Dataset #: 3
Motif ID: 63
Motif name: MIZF
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 9
Similarity score: 1.10694

Alignment:
GCGGACGTTV--
-CGTCCGTATAG

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV

Dataset #: 4 Motif ID: 82 Motif name: gCGCGCsCgsG

Original motif     Consensus sequence: GCGCGCSCGCG Reverse complement motif     Consensus sequence: CGCGSGCGCGC

Best Matches for Motif ID 82 (Highest to Lowest)

Dataset #: 4
Motif ID: 79
Motif name: cCGCGGrCACG
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0131931

Alignment:
CCGCGGRCACG
GCGCGCSCGCG

Original motif     Consensus sequence: CCGCGGRCACG Reverse complement motif     Consensus sequence: CGTGKCCGCGG

Dataset #: 4
Motif ID: 78
Motif name: ssGCkTGCssk
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0299395

Alignment:
SSGCKTGCSSK
GCGCGCSCGCG

Original motif     Consensus sequence: SSGCKTGCSSK Reverse complement motif     Consensus sequence: YSSGCAYGCSS

Dataset #: 4
Motif ID: 68
Motif name: sscCCCGCGcs
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0338798

Alignment:
SBCGCGGGGSB
CGCGSGCGCGC

Original motif     Consensus sequence: BSCCCCGCGBS Reverse complement motif     Consensus sequence: SBCGCGGGGSB

Dataset #: 4
Motif ID: 74
Motif name: ssCCCCGCSssk
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0410595

Alignment:
BBSGGCGGGGBS
-CGCGSGCGCGC

Original motif     Consensus sequence: SBCCCCGCCSBB Reverse complement motif     Consensus sequence: BBSGGCGGGGBS

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.0537298

Alignment:
BMSMGCCYMCTKSTGGMHM
------GCGCGCSCGCG--

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0651602

Alignment:
MGGTCAGGGTGACCTRDBHV
---GCGCGCSCGCG------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0669956

Alignment:
HVCDBBDBCAGCAG
---CGCGSGCGCGC

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 3
Motif ID: 63
Motif name: MIZF
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.55601

Alignment:
BAACGTCCGC-
GCGCGCSCGCG

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV

Dataset #: 2
Motif ID: 47
Motif name: Motif 47
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.557768

Alignment:
-YGCCACCTDSTGGY
GCGCGCSCGCG----

Original motif     Consensus sequence: YGCCACCTDSTGGY Reverse complement motif     Consensus sequence: KCCASDAGGTGGCK

Dataset #: 3
Motif ID: 58
Motif name: Myc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.561823

Alignment:
DCCACGTGCV-
GCGCGCSCGCG

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV

Dataset #: 4 Motif ID: 83 Motif name: srACyCCGAyr

Original motif     Consensus sequence: SRACYCCGAYR Reverse complement motif     Consensus sequence: KKTCGGKGTKS

Best Matches for Motif ID 83 (Highest to Lowest)

Dataset #: 5
Motif ID: 92
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 11
Similarity score: 0.0337509

Alignment:
TGTGTGDKTGTGTGTGTRTG
--KKTCGGKGTKS-------

Original motif     Consensus sequence: CAMACACACACAYDCACACA Reverse complement motif     Consensus sequence: TGTGTGDKTGTGTGTGTRTG

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0342809

Alignment:
MGGTCAGGGTGACCTRDBHV
-KKTCGGKGTKS--------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 5
Motif ID: 89
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0348124

Alignment:
TGTGTGWGTGTGTGTGTG
------KKTCGGKGTKS-

Original motif     Consensus sequence: CACACACACACWCACACA Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0372475

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
---------KKTCGGKGTKS----

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0379796

Alignment:
BAGGYCABHBTGACCKHV
---SRACYCCGAYR----

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.0381944

Alignment:
GGAGCACTGTGACACCACA
-----SRACYCCGAYR---

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 1
Motif ID: 6
Motif name: Motif 6
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.039412

Alignment:
TGTGTSWGTBTSTG
--KKTCGGKGTKS-

Original motif     Consensus sequence: CASABACWSACACA Reverse complement motif     Consensus sequence: TGTGTSWGTBTSTG

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 11
Similarity score: 0.0397727

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
--------SRACYCCGAYR------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.0402801

Alignment:
GGYGCTGTCCATGGTGCTGAA
------KKTCGGKGTKS----

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.0438762

Alignment:
GTGTGTGTGTGTGT
-KKTCGGKGTKS--

Original motif     Consensus sequence: ACACACACACACAC Reverse complement motif     Consensus sequence: GTGTGTGTGTGTGT

Dataset #: 5 Motif ID: 84 Motif name: TFW3

Original motif     Consensus sequence: GCACTG Reverse complement motif     Consensus sequence: CAGTGC

Best Matches for Motif ID 84 (Highest to Lowest)

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0

Alignment:
GGAGCACTGTGACACCACA
----------GCACTG---

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.000794289

Alignment:
AGTGSWSCACTGTGAMAMCACAGTG
-------------GCACTG------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.00482436

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
--------------CAGTGC----

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0201914

Alignment:
CAHCACAGTGGAGCACT
------CAGTGC-----

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0205497

Alignment:
CAGTGCTCCACTGTGBT
-------GCACTG----

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 13
Number of overlap: 6
Similarity score: 0.0290883

Alignment:
ACTGTGACACCACAGTGGAGCACT
------------CAGTGC------

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 15
Number of overlap: 6
Similarity score: 0.039883

Alignment:
TTCAGCACCATGGACAGCKCC
-CAGTGC--------------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 65
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0447224

Alignment:
CCAGYYHVADCCRG
-------CAGTGC-

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Dataset #: 1
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0459818

Alignment:
GAKAGKTGGCTCWG
GCACTG--------

Original motif     Consensus sequence: CWGAGCCAYCTYTC Reverse complement motif     Consensus sequence: GAKAGKTGGCTCWG

Dataset #: 4
Motif ID: 75
Motif name: wwCCAmAGTCmt
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0587933

Alignment:
VDGACTRTGGDD
-----GCACTG-

Original motif     Consensus sequence: DDCCAMAGTCHB Reverse complement motif     Consensus sequence: VDGACTRTGGDD

Dataset #: 5 Motif ID: 85 Motif name: TFW1

Original motif     Consensus sequence: TTGCGCAA Reverse complement motif     Consensus sequence: TTGCGCAA

Best Matches for Motif ID 85 (Highest to Lowest)

Dataset #: 1
Motif ID: 21
Motif name: Motif 21
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0195312

Alignment:
TTYGGAAAGCAG
----TTGCGCAA

Original motif     Consensus sequence: CTGCTTTCCMAA Reverse complement motif     Consensus sequence: TTYGGAAAGCAG

Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0276442

Alignment:
AKGYYCAAAGRTCA
TTGCGCAA------

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0277567

Alignment:
BTRGGDCARAGGKCA
------TTGCGCAA-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 1
Motif ID: 28
Motif name: Motif 28
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0328125

Alignment:
TTTACTAAAT
-TTGCGCAA-

Original motif     Consensus sequence: ATTTAGTAAA Reverse complement motif     Consensus sequence: TTTACTAAAT

Dataset #: 4
Motif ID: 76
Motif name: CAcCACAGTGGAGCAct
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0336914

Alignment:
CAHCACAGTGGAGCACT
-TTGCGCAA--------

Original motif     Consensus sequence: CAHCACAGTGGAGCACT Reverse complement motif     Consensus sequence: AGTGCTCCACTGTGDTG

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 17
Number of overlap: 8
Similarity score: 0.0338471

Alignment:
TGGAGCACTGTGACAVCACAGTGG
TTGCGCAA----------------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 77
Motif name: AgTGCTCCACTGTGgTGTCACAgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.034375

Alignment:
AGTGCTCCACTGTGGTGTCACAGT
---------------TTGCGCAA-

Original motif     Consensus sequence: AGTGCTCCACTGTGGTGTCACAGT Reverse complement motif     Consensus sequence: ACTGTGACACCACAGTGGAGCACT

Dataset #: 4
Motif ID: 70
Motif name: CagTGCTCCACTGTGgT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0354167

Alignment:
CAGTGCTCCACTGTGBT
-------TTGCGCAA--

Original motif     Consensus sequence: CAGTGCTCCACTGTGBT Reverse complement motif     Consensus sequence: ABCACAGTGGAGCACTG

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0359375

Alignment:
KTTTTTTKTTTTTTDAAB
---------TTGCGCAA-

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0407242

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
---------------TTGCGCAA--

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 5 Motif ID: 86 Motif name: TFW2

Original motif     Consensus sequence: YGGACTTACG Reverse complement motif     Consensus sequence: CGTAAGTCCK

Best Matches for Motif ID 86 (Highest to Lowest)

Dataset #: 4
Motif ID: 75
Motif name: wwCCAmAGTCmt
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0441919

Alignment:
VDGACTRTGGDD
--YGGACTTACG

Original motif     Consensus sequence: DDCCAMAGTCHB Reverse complement motif     Consensus sequence: VDGACTRTGGDD

Dataset #: 3
Motif ID: 54
Motif name: Esrrb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0583503

Alignment:
VBBYCAAGGTCA
CGTAAGTCCK--

Original motif     Consensus sequence: VBBYCAAGGTCA Reverse complement motif     Consensus sequence: TGACCTTGMBBB

Dataset #: 3
Motif ID: 51
Motif name: HNF4A
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.063039

Alignment:
TGMYCTTTGBCCK
---YGGACTTACG

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0662938

Alignment:
TTCAGCACCATGGACAGCKCC
----------YGGACTTACG-

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0672009

Alignment:
TGAMCTTTGMMCYT
YGGACTTACG----

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0684067

Alignment:
VDBHMAGGTCACCCTGACCY
--------CGTAAGTCCK--

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0692256

Alignment:
TGRCCTKTGHCCKAB
---CGTAAGTCCK--

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 1
Motif ID: 8
Motif name: Motif 8
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0694444

Alignment:
AAGSATTTTCA
YGGACTTACG-

Original motif     Consensus sequence: TGAAAATSCTT Reverse complement motif     Consensus sequence: AAGSATTTTCA

Dataset #: 5
Motif ID: 87
Motif name: TFF1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0707746

Alignment:
VVTCTTTGTCCT
--CGTAAGTCCK

Original motif     Consensus sequence: AGGACAAAGAVV Reverse complement motif     Consensus sequence: VVTCTTTGTCCT

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 10
Similarity score: 0.0713889

Alignment:
GTTGACCTTTGACCTTT
------YGGACTTACG-

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 5 Motif ID: 87 Motif name: TFF1

Original motif     Consensus sequence: AGGACAAAGAVV Reverse complement motif     Consensus sequence: VVTCTTTGTCCT

Best Matches for Motif ID 87 (Highest to Lowest)

Dataset #: 3
Motif ID: 51
Motif name: HNF4A
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0111472

Alignment:
TGMYCTTTGBCCK
-VVTCTTTGTCCT

Original motif     Consensus sequence: RGGBCAAAGKYCA Reverse complement motif     Consensus sequence: TGMYCTTTGBCCK

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0210867

Alignment:
BTRGGDCARAGGKCA
--AGGACAAAGAVV-

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.0351633

Alignment:
BAGGYCABHBTGACCKHV
----VVTCTTTGTCCT--

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 12
Similarity score: 0.039773

Alignment:
VDBHMAGGTCACCCTGACCY
VVTCTTTGTCCT--------

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 12
Similarity score: 0.0408272

Alignment:
RAGKGMAGVRRGSRCASAGV
-AGGACAAAGAVV-------

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 3
Motif ID: 52
Motif name: NR2F1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0472374

Alignment:
AKGYYCAAAGRTCA
-AGGACAAAGAVV-

Original motif     Consensus sequence: TGAMCTTTGMMCYT Reverse complement motif     Consensus sequence: AKGYYCAAAGRTCA

Dataset #: 3
Motif ID: 60
Motif name: NR1H2RXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0472884

Alignment:
GTTGACCTTTGACCTTT
---VVTCTTTGTCCT--

Original motif     Consensus sequence: AAAGGTCAAAGGTCAAC Reverse complement motif     Consensus sequence: GTTGACCTTTGACCTTT

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 12
Similarity score: 0.0530556

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
-------AGGACAAAGAVV------

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 13
Number of overlap: 12
Similarity score: 0.0539204

Alignment:
TGGAGCACTGTGACAVCACAGTGG
------------AGGACAAAGAVV

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 12
Similarity score: 0.0558379

Alignment:
TTCAGCACCATGGACAGCKCC
---AGGACAAAGAVV------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 5 Motif ID: 88 Motif name: TFF11

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Best Matches for Motif ID 88 (Highest to Lowest)

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.03576

Alignment:
GCAGAKGSAGGABDGHDG
-CTGCTGBDBBDGBD---

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0381494

Alignment:
RAGKGMAGVRRGSRCASAGV
---HVCDBBDBCAGCAG---

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 14
Similarity score: 0.0491354

Alignment:
GGYGCTGTCCATGGTGCTGAA
------CTGCTGBDBBDGBD-

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0521061

Alignment:
VDBHMAGGTCACCCTGACCY
-----HVCDBBDBCAGCAG-

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0565525

Alignment:
VHRGGTCABDBTGMCCTB
-CTGCTGBDBBDGBD---

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0584136

Alignment:
BTRGGDCARAGGKCA
-HVCDBBDBCAGCAG

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 14
Similarity score: 0.0586124

Alignment:
GGAGCACTGTGACACCACA
----HVCDBBDBCAGCAG-

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 14
Similarity score: 0.060085

Alignment:
CCACTGTGVTGTCACAGTGCTCCA
-----CTGCTGBDBBDGBD-----

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 3
Motif ID: 65
Motif name: Tcfcp2l1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0669051

Alignment:
CKGGDTBDMMCTGG
CTGCTGBDBBDGBD

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0670544

Alignment:
BMSMGCCYMCTKSTGGMHM
-HVCDBBDBCAGCAG----

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 5 Motif ID: 89 Motif name: TFM1

Original motif     Consensus sequence: CACACACACACWCACACA Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG

Best Matches for Motif ID 89 (Highest to Lowest)

Dataset #: 5
Motif ID: 92
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0

Alignment:
CAMACACACACAYDCACACA
--CACACACACACWCACACA

Original motif     Consensus sequence: CAMACACACACAYDCACACA Reverse complement motif     Consensus sequence: TGTGTGDKTGTGTGTGTRTG

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.099254

Alignment:
KTTTTTTKTTTTTTDAAB
TGTGTGWGTGTGTGTGTG

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 17
Similarity score: 0.598911

Alignment:
VDBHMAGGTCACCCTGACCY-
---CACACACACACWCACACA

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 16
Similarity score: 1.09969

Alignment:
GGAGCACTGTGACACCACA--
---CACACACACACWCACACA

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 15
Similarity score: 1.59953

Alignment:
---TTTTTTTKTTKTTTAATTHW
TGTGTGWGTGTGTGTGTG-----

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 1
Motif ID: 6
Motif name: Motif 6
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 2.04528

Alignment:
----CASABACWSACACA
CACACACACACWCACACA

Original motif     Consensus sequence: CASABACWSACACA Reverse complement motif     Consensus sequence: TGTGTSWGTBTSTG

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 2.09655

Alignment:
HAAAAHAAARMAAA----
CACACACACACWCACACA

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 2.51954

Alignment:
ACACACACACACAC-----
-CACACACACACWCACACA

Original motif     Consensus sequence: ACACACACACACAC Reverse complement motif     Consensus sequence: GTGTGTGTGTGTGT

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 13
Similarity score: 2.59375

Alignment:
-----BAGGYCABHBTGACCKHV
CACACACACACWCACACA-----

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 13
Similarity score: 2.59669

Alignment:
TTCAGCACCATGGACAGCKCC-----
--------CACACACACACWCACACA

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 5 Motif ID: 90 Motif name: TFM2

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Best Matches for Motif ID 90 (Highest to Lowest)

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 0.0675327

Alignment:
RAGKGMAGVRRGSRCASAGV
--GCAGAKGSAGGABDGHDG

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 18
Similarity score: 0.0741766

Alignment:
VDBHMAGGTCACCCTGACCY
-CHHCHBTCCTSCYTCTGC-

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0893246

Alignment:
YDRCCASYAGRKGGCRSYV
-GCAGAKGSAGGABDGHDG

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.0901636

Alignment:
TGGAGCACTGTGACAVCACAGTGG
GCAGAKGSAGGABDGHDG------

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 17
Similarity score: 0.58153

Alignment:
-BAGGYCABHBTGACCKHV
CHHCHBTCCTSCYTCTGC-

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 1.58383

Alignment:
BTRGGDCARAGGKCA---
GCAGAKGSAGGABDGHDG

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 11
Number of overlap: 15
Similarity score: 1.5846

Alignment:
CACTGTGRTRTCACAGTGSWSCACT---
----------CHHCHBTCCTSCYTCTGC

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 5
Motif ID: 88
Motif name: TFF11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 2.05771

Alignment:
----HVCDBBDBCAGCAG
CHHCHBTCCTSCYTCTGC

Original motif     Consensus sequence: CTGCTGBDBBDGBD Reverse complement motif     Consensus sequence: HVCDBBDBCAGCAG

Dataset #: 3
Motif ID: 65
Motif name: Tcfcp2l1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 2.08379

Alignment:
----CKGGDTBDMMCTGG
GCAGAKGSAGGABDGHDG

Original motif     Consensus sequence: CCAGYYHVADCCRG Reverse complement motif     Consensus sequence: CKGGDTBDMMCTGG

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 14
Similarity score: 2.08495

Alignment:
----TTCAGCACCATGGACAGCKCC
GCAGAKGSAGGABDGHDG-------

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 5 Motif ID: 91 Motif name: TFM3

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Best Matches for Motif ID 91 (Highest to Lowest)

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.00694444

Alignment:
TTTTTTTKTTKTTTAATTHW
KTTTTTTKTTTTTTDAAB--

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 5
Motif ID: 89
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 0.0750248

Alignment:
CACACACACACWCACACA
BTTHAAAAAAYAAAAAAR

Original motif     Consensus sequence: CACACACACACWCACACA Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG

Dataset #: 5
Motif ID: 92
Motif name: TFM11
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 15
Similarity score: 1.57541

Alignment:
TGTGTGDKTGTGTGTGTRTG---
-----KTTTTTTKTTTTTTDAAB

Original motif     Consensus sequence: CAMACACACACAYDCACACA Reverse complement motif     Consensus sequence: TGTGTGDKTGTGTGTGTRTG

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 2.01116

Alignment:
AAAAAAAAAAAAAT----
BTTHAAAAAAYAAAAAAR

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 2.02946

Alignment:
----TTTRKTTTHTTTTH
KTTTTTTKTTTTTTDAAB

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 2.0692

Alignment:
TTTAATGTYTTTWA----
KTTTTTTKTTTTTTDAAB

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 1
Motif ID: 6
Motif name: Motif 6
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 2.0735

Alignment:
CASABACWSACACA----
BTTHAAAAAAYAAAAAAR

Original motif     Consensus sequence: CASABACWSACACA Reverse complement motif     Consensus sequence: TGTGTSWGTBTSTG

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 2.07366

Alignment:
TAASTCTWTTTTAA----
KTTTTTTKTTTTTTDAAB

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 1
Motif ID: 15
Motif name: Motif 15
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 2.56147

Alignment:
AAAGRTMAAACTA-----
BTTHAAAAAAYAAAAAAR

Original motif     Consensus sequence: AAAGRTMAAACTA Reverse complement motif     Consensus sequence: TAGTTTYAKCTTT

Dataset #: 1
Motif ID: 23
Motif name: Motif 23
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 2.56748

Alignment:
-----ATYAATGAAWACAT
BTTHAAAAAAYAAAAAAR-

Original motif     Consensus sequence: ATGTWTTCATTMAT Reverse complement motif     Consensus sequence: ATYAATGAAWACAT

Dataset #: 5 Motif ID: 92 Motif name: TFM11

Original motif     Consensus sequence: CAMACACACACAYDCACACA Reverse complement motif     Consensus sequence: TGTGTGDKTGTGTGTGTRTG

Best Matches for Motif ID 92 (Highest to Lowest)

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 19
Similarity score: 0.0921695

Alignment:
TTTTTTTKTTKTTTAATTHW-
-TGTGTGDKTGTGTGTGTRTG

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 5
Motif ID: 89
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.5

Alignment:
TGTGTGWGTGTGTGTGTG--
TGTGTGDKTGTGTGTGTRTG

Original motif     Consensus sequence: CACACACACACWCACACA Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 16
Similarity score: 1.597

Alignment:
GGAGCACTGTGACACCACA----
---CAMACACACACAYDCACACA

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 15
Similarity score: 2.09964

Alignment:
-----BTTHAAAAAAYAAAAAAR
CAMACACACACAYDCACACA---

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 1
Motif ID: 6
Motif name: Motif 6
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 2.54253

Alignment:
TGTGTSWGTBTSTG------
TGTGTGDKTGTGTGTGTRTG

Original motif     Consensus sequence: CASABACWSACACA Reverse complement motif     Consensus sequence: TGTGTSWGTBTSTG

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 14
Similarity score: 2.59651

Alignment:
RAGKGMAGVRRGSRCASAGV------
------CAMACACACACAYDCACACA

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 2.59861

Alignment:
HAAAAHAAARMAAA------
CAMACACACACAYDCACACA

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 1
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 3.02049

Alignment:
ACACACACACACAC-------
-CAMACACACACAYDCACACA

Original motif     Consensus sequence: ACACACACACACAC Reverse complement motif     Consensus sequence: GTGTGTGTGTGTGT

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 13
Similarity score: 3.09283

Alignment:
GCAGAKGSAGGABDGHDG-------
-----TGTGTGDKTGTGTGTGTRTG

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 1
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 3.09411

Alignment:
HCAGRRVACASAG-------
CAMACACACACAYDCACACA

Original motif     Consensus sequence: HCAGRRVACASAG Reverse complement motif     Consensus sequence: CTSTGTBKMCTGH

Dataset #: 5 Motif ID: 93 Motif name: TFM12

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Best Matches for Motif ID 93 (Highest to Lowest)

Dataset #: 4
Motif ID: 73
Motif name: TGGAGCACTGTGACAcCACAGTGg
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 20
Similarity score: 0.0627086

Alignment:
TGGAGCACTGTGACAVCACAGTGG
--RAGKGMAGVRRGSRCASAGV--

Original motif     Consensus sequence: TGGAGCACTGTGACAVCACAGTGG Reverse complement motif     Consensus sequence: CCACTGTGVTGTCACAGTGCTCCA

Dataset #: 4
Motif ID: 72
Motif name: CACTGTGrYrtCACAGTGswsCAcT
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 20
Similarity score: 0.063541

Alignment:
CACTGTGRTRTCACAGTGSWSCACT
----VCTSTGKSCMKBCTRCYCTK-

Original motif     Consensus sequence: CACTGTGRTRTCACAGTGSWSCACT Reverse complement motif     Consensus sequence: AGTGSWSCACTGTGAMAMCACAGTG

Dataset #: 3
Motif ID: 57
Motif name: REST
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 20
Similarity score: 0.0650732

Alignment:
GGYGCTGTCCATGGTGCTGAA
-VCTSTGKSCMKBCTRCYCTK

Original motif     Consensus sequence: TTCAGCACCATGGACAGCKCC Reverse complement motif     Consensus sequence: GGYGCTGTCCATGGTGCTGAA

Dataset #: 3
Motif ID: 53
Motif name: ESR1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 19
Similarity score: 0.541945

Alignment:
MGGTCAGGGTGACCTRDBHV-
-RAGKGMAGVRRGSRCASAGV

Original motif     Consensus sequence: VDBHMAGGTCACCCTGACCY Reverse complement motif     Consensus sequence: MGGTCAGGGTGACCTRDBHV

Dataset #: 3
Motif ID: 66
Motif name: CTCF
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 19
Similarity score: 0.565451

Alignment:
BMSMGCCYMCTKSTGGMHM-
VCTSTGKSCMKBCTRCYCTK

Original motif     Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif     Consensus sequence: BMSMGCCYMCTKSTGGMHM

Dataset #: 3
Motif ID: 59
Motif name: ESR2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 1.04822

Alignment:
--BAGGYCABHBTGACCKHV
RAGKGMAGVRRGSRCASAGV

Original motif     Consensus sequence: VHRGGTCABDBTGMCCTB Reverse complement motif     Consensus sequence: BAGGYCABHBTGACCKHV

Dataset #: 5
Motif ID: 90
Motif name: TFM2
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 18
Similarity score: 1.04851

Alignment:
--CHHCHBTCCTSCYTCTGC
VCTSTGKSCMKBCTRCYCTK

Original motif     Consensus sequence: CHHCHBTCCTSCYTCTGC Reverse complement motif     Consensus sequence: GCAGAKGSAGGABDGHDG

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 18
Similarity score: 1.06391

Alignment:
TGTGGTGTCACAGTGCTCC--
-VCTSTGKSCMKBCTRCYCTK

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 5
Motif ID: 94
Motif name: TFM13
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 18
Similarity score: 1.06828

Alignment:
WHAATTAAARAARAAAAAAA--
--RAGKGMAGVRRGSRCASAGV

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Dataset #: 4
Motif ID: 71
Motif name: AmTGTGACACCACAGT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 2.06801

Alignment:
----AMTGTGACACCACAGT
RAGKGMAGVRRGSRCASAGV

Original motif     Consensus sequence: AMTGTGACACCACAGT Reverse complement motif     Consensus sequence: ACTGTGGTGTCACART

Dataset #: 5 Motif ID: 94 Motif name: TFM13

Original motif     Consensus sequence: TTTTTTTKTTKTTTAATTHW Reverse complement motif     Consensus sequence: WHAATTAAARAARAAAAAAA

Best Matches for Motif ID 94 (Highest to Lowest)

Dataset #: 5
Motif ID: 92
Motif name: TFM11
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 19
Similarity score: 0.0813331

Alignment:
-CAMACACACACAYDCACACA
WHAATTAAARAARAAAAAAA-

Original motif     Consensus sequence: CAMACACACACAYDCACACA Reverse complement motif     Consensus sequence: TGTGTGDKTGTGTGTGTRTG

Dataset #: 5
Motif ID: 91
Motif name: TFM3
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 18
Similarity score: 0.520337

Alignment:
KTTTTTTKTTTTTTDAAB--
TTTTTTTKTTKTTTAATTHW

Original motif     Consensus sequence: KTTTTTTKTTTTTTDAAB Reverse complement motif     Consensus sequence: BTTHAAAAAAYAAAAAAR

Dataset #: 5
Motif ID: 93
Motif name: TFM12
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.585681

Alignment:
--VCTSTGKSCMKBCTRCYCTK
TTTTTTTKTTKTTTAATTHW--

Original motif     Consensus sequence: RAGKGMAGVRRGSRCASAGV Reverse complement motif     Consensus sequence: VCTSTGKSCMKBCTRCYCTK

Dataset #: 5
Motif ID: 89
Motif name: TFM1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 15
Similarity score: 2.08869

Alignment:
CACACACACACWCACACA-----
---WHAATTAAARAARAAAAAAA

Original motif     Consensus sequence: CACACACACACWCACACA Reverse complement motif     Consensus sequence: TGTGTGWGTGTGTGTGTG

Dataset #: 2
Motif ID: 49
Motif name: Motif 49
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 2.51913

Alignment:
AAAAAAAAAAAAAT------
WHAATTAAARAARAAAAAAA

Original motif     Consensus sequence: AAAAAAAAAAAAAT Reverse complement motif     Consensus sequence: ATTTTTTTTTTTTT

Dataset #: 1
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 2.53469

Alignment:
------TTTRKTTTHTTTTH
TTTTTTTKTTKTTTAATTHW

Original motif     Consensus sequence: HAAAAHAAARMAAA Reverse complement motif     Consensus sequence: TTTRKTTTHTTTTH

Dataset #: 1
Motif ID: 33
Motif name: Motif 33
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 2.5727

Alignment:
TTTAATGTYTTTWA------
TTTTTTTKTTKTTTAATTHW

Original motif     Consensus sequence: TTTAATGTYTTTWA Reverse complement motif     Consensus sequence: TWAAAKACATTAAA

Dataset #: 4
Motif ID: 67
Motif name: TgTGgTGTCACAGTGCTCC
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 14
Similarity score: 2.5844

Alignment:
------TGTGGTGTCACAGTGCTCC
TTTTTTTKTTKTTTAATTHW-----

Original motif     Consensus sequence: TGTGGTGTCACAGTGCTCC Reverse complement motif     Consensus sequence: GGAGCACTGTGACACCACA

Dataset #: 1
Motif ID: 45
Motif name: Motif 45
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 2.58546

Alignment:
------TTAAAAWAGASTTA
WHAATTAAARAARAAAAAAA

Original motif     Consensus sequence: TAASTCTWTTTTAA Reverse complement motif     Consensus sequence: TTAAAAWAGASTTA

Dataset #: 3
Motif ID: 64
Motif name: PPARGRXRA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 2.58746

Alignment:
TGRCCTKTGHCCKAB------
-TTTTTTTKTTKTTTAATTHW

Original motif     Consensus sequence: BTRGGDCARAGGKCA Reverse complement motif     Consensus sequence: TGRCCTKTGHCCKAB

Results created by MOTIFSIM on 06-18-2018 15:05:43
Runtime: 848.838 seconds

MOTIFSIM is written by Ngoc Tam L. Tran
Motif logo generated by weblogo