**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 5 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # MEME_DM05.txt 46 1 MEME-ChIP_DM05.txt 4 2 PScanChIP_DM05.txt 16 3 RSAT_peak-motifs_DM05.txt 17 4 W-ChIPMotifs_DM05.txt 11 5 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** *************************************************************** Combined Motifs for Top Best Match Motif ID 1 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 TFM2 Original Motif Original Motif CYTSCCTCTGC CHHCHBTCCTSCYTCTGC CHHCHBTCCTSCCTCTGC Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------CYTSCCTCTGC CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 48 Reverse Complement Original Motif GCAGAGGSAGGABDGHDG GCARRGGSAGS GCAGAGGSAGSABDGHDG Direction: Forward Position #: 1 Overlap #: 11 Alignment: GCAGAGGSAGGABDGHDG GCARRGGSAGS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Reverse Complement Reverse Complement CHHCHBTSCTSCCTCTGC HVCDBBDBCAGCAG HHHVBBDSCWGCHBCTGC Direction: Forward Position #: 1 Overlap #: 14 Alignment: CHHCHBTSCTSCCTCTGC HVCDBBDBCAGCAG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif HHHVBBDSCWGCHBCTGC RAGKGMAGVRRGSRCASAGV HHHVVBDSCWGCVDVBRCASAGV Direction: Forward Position #: 4 Overlap #: 15 Alignment: HHHVBBDSCWGCHBCTGC----- ---RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Reverse Complement VCTSTGMVVHBGCWGSDBBBDDD BMSMGCCYMCTKSTGGMHM BCBMKSCHMCTGSTGGHBHBDDD Direction: Forward Position #: 1 Overlap #: 19 Alignment: VCTSTGMVVHBGCWGSDBBBDDD BMSMGCCYMCTKSTGGMHM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Reverse Complement HHHVHBHCCASCAGRDGSYRVGV GGYGCTGTCCATGGTGCTGAA HHHVDGHSCWGYMSVDGGTGCKGAA Direction: Forward Position #: 5 Overlap #: 19 Alignment: HHHVHBHCCASCAGRDGSYRVGV-- ----GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement HHHVDGHSCWGYMSVDGGTGCKGAA MGGTCAGGGTGACCTRDBHV MDGHCRBGCTGHCCDDGGYVCKGAA Direction: Forward Position #: 1 Overlap #: 20 Alignment: HHHVDGHSCWGYMSVDGGTGCKGAA MGGTCAGGGTGACCTRDBHV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif MDGHCRBGCTGHCCDDGGYVCKGAA BTRGGDCARAGGKCA MDGHCVBRSKGHMVAGGKYACKGAA Direction: Forward Position #: 6 Overlap #: 15 Alignment: MDGHCRBGCTGHCCDDGGYVCKGAA -----BTRGGDCARAGGKCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Original Motif Reverse Complement MDGHCVBRSKGHMVAGGKYACKGAA CKGGDTBDMMCTGG MDGHCCDGGDKBVMASKGSACKGAA Direction: Forward Position #: 6 Overlap #: 14 Alignment: MDGHCVBRSKGHMVAGGKYACKGAA -----CKGGDTBDMMCTGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 47 Combined Motif Reverse Complement Reverse Complement TTCRGTSCYSTYBBYDCCDGGHCHR KCCASDAGGTGGCK TTCRGKCCHSDHGGYGSCDGGHCHR Direction: Forward Position #: 6 Overlap #: 14 Alignment: TTCRGTSCYSTYBBYDCCDGGHCHR -----KCCASDAGGTGGCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk Combined Motif Reverse Complement Original Motif MDGHCCHGSCMCCHDSHGGRCKGAA SBCCCCGCCSBB MDGHCSBSCCCSCBVSBGGRCKGAA Direction: Forward Position #: 6 Overlap #: 12 Alignment: MDGHCCHGSCMCCHDSHGGRCKGAA -----SBCCCCGCCSBB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 2 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 TFM1 Reverse Complement Reverse Complement GTGTGTGTGTGTGT TGTGTGWGTGTGTGTGTG GTGGTGTGTGTGTGTGTT Direction: Backward Position #: 4 Overlap #: 14 Alignment: -GTGTGTGTGTGTGT--- TGTGTGWGTGTGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement GTGGTGTGTGTGTGTGTT TGTGTGDKTGTGTGTGTRTG GTKGTGTGTKTGTGTGTKTRTG Direction: Forward Position #: 3 Overlap #: 16 Alignment: GTGGTGTGTGTGTGTGTT---- --TGTGTGDKTGTGTGTGTRTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement CAMARACACACAYACACACRAC AGTGSWSCACTGTGAMAMCACAGTG AGTGSWSCACTGYRMMAACACASWBACACACRAC Direction: Forward Position #: 13 Overlap #: 13 Alignment: ------------CAMARACACACAYACACACRAC AGTGSWSCACTGTGAMAMCACAGTG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement AGTGSWSCACTGYRMMAACACASWBACACACRAC BTTHAAAAAAYAAAAAAR CRACYKWMAAMAMABAVAMAMAAGTGSWSCACTG Direction: Backward Position #: 5 Overlap #: 18 Alignment: AGTGSWSCACTGYRMMAACACASWBACACACRAC ------------BTTHAAAAAAYAAAAAAR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 3 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 TFM12 Original Motif Original Motif HCAGRRVACASAG RAGKGMAGVRRGSRCASAGV RAGKGMWSARRRVRCASAGV Direction: Forward Position #: 7 Overlap #: 13 Alignment: ------HCAGRRVACASAG- RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Reverse Complement VCTSTGKVMMMTSWRCYCTK MGGTCAGGGTGACCTRDBHV VCTSWGGHCAVDSTGVCCTDDBHV Direction: Forward Position #: 5 Overlap #: 16 Alignment: VCTSTGKVMMMTSWRCYCTK---- ----MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Reverse Complement VDBHHAGGBCASDVTGHCCWSAGV AGTGSWSCACTGTGAMAMCACAGTG VDVBTRGDBCACTGTGACMHCASAGTG Direction: Forward Position #: 3 Overlap #: 22 Alignment: VDBHHAGGBCASDVTGHCCWSAGV--- --AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Reverse Complement VDVBTRGDBCACTGTGACMHCASAGTG GCAGAKGSAGGABDGHDG GVDVVKGSAGSABDGTGVCMHCASAGTG Direction: Forward Position #: 2 Overlap #: 17 Alignment: -VDVBTRGDBCACTGTGACMHCASAGTG GCAGAKGSAGGABDGHDG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Original Motif GVDVVKGSAGSABDGTGVCMHCASAGTG YDRCCASYAGRKGGCRSYV GBDVCCRSHRGRBGGYRVYMHCASAGTG Direction: Forward Position #: 2 Overlap #: 19 Alignment: GVDVVKGSAGSABDGTGVCMHCASAGTG -YDRCCASYAGRKGGCRSYV-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement CACTSTGHYKVMKCCBKCKHSKGGVHBC CCACTGTGVTGTCACAGTGCTCCA CCACTGTGBTGTCACMSTSBTSBDGVHBC Direction: Forward Position #: 2 Overlap #: 23 Alignment: -CACTSTGHYKVMKCCBKCKHSKGGVHBC CCACTGTGVTGTCACAGTGCTCCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif GBDVCDBSABSASYGTGACABCACAGTGG BTRGGDCARAGGKCA GBDVHDGGDBMAVBGKSACABCACAGTGG Direction: Forward Position #: 4 Overlap #: 15 Alignment: GBDVCDBSABSASYGTGACABCACAGTGG ---BTRGGDCARAGGKCA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Original Motif Original Motif GBDVHDGGDBMAVBGKSACABCACAGTGG CCAGYYHVADCCRG SCRGHDBVAVCMRGGKSACABCACAGTGG Direction: Forward Position #: 1 Overlap #: 14 Alignment: GBDVHDGGDBMAVBGKSACABCACAGTGG CCAGYYHVADCCRG--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Reverse Complement CCACTGTGBTGTSRCCKRGVTVBDHCKGS WHAATTAAARAARAAAAAAA ARAARAAAAAAATBDVWYMDCCACTGTGBTGTSRCCKRGVT Direction: Backward Position #: 13 Overlap #: 8 Alignment: CCACTGTGBTGTSRCCKRGVTVBDHCKGS------------ ---------------------WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 4 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 TFM13 Original Motif Reverse Complement HAAAAHAAARMAAA WHAATTAAARAARAAAAAAA WHAATHAAAAAAAAAMAAAA Direction: Forward Position #: 6 Overlap #: 14 Alignment: -----HAAAAHAAARMAAA- WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Original Motif TTTTYTTTTTTTTTHATTDW KTTTTTTKTTTTTTDAAB TTTTTTTKTTTTTTDAWKDW Direction: Forward Position #: 1 Overlap #: 18 Alignment: TTTTYTTTTTTTTTHATTDW KTTTTTTKTTTTTTDAAB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Original Motif Reverse Complement TTTTTTTKTTTTTTDAWKDW ATTTTTTTTTTTTT WTTTTTTTTTTTTTDAWKDW Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTTTTTTKTTTTTTDAWKDW ATTTTTTTTTTTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Original Motif Original Motif WTTTTTTTTTTTTTDAWKDW TTTAATGTYTTTWA TTTWWTKTTTTTTWDAWKDW Direction: Forward Position #: 1 Overlap #: 14 Alignment: WTTTTTTTTTTTTTDAWKDW TTTAATGTYTTTWA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Reverse Complement TTTWWTKTTTTTTWDAWKDW TGTGTGDKTGTGTGTGTRTG TGTGTGDKTKWDTGTKTKTKWDAWKDW Direction: Forward Position #: 8 Overlap #: 13 Alignment: -------TTTWWTKTTTTTTWDAWKDW TGTGTGDKTGTGTGTGTRTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif WHRWTDWRARAYACAHWRARDCACACA CACACACACACWCACACA WHRWTHWVAVACACAYWVAHACACACA Direction: Forward Position #: 6 Overlap #: 18 Alignment: WHRWTDWRARAYACAHWRARDCACACA -----CACACACACACWCACACA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Reverse Complement Reverse Complement TGTGTGTDTVWKTGTGTVTVWDAWKDW TGTGTSWGTBTSTG TGTGTSWGTVTGTGTGTVTVWDAWKDW Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGTGTGTDTVWKTGTGTVTVWDAWKDW TGTGTSWGTBTSTG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Reverse Complement TGTGTSWGTVTGTGTGTVTVWDAWKDW VCTSTGKSCMKBCTRCYCTK VCTSTGTSYVTBYDDVTVTKTVTVWDAWKDW Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----TGTGTSWGTVTGTGTGTVTVWDAWKDW VCTSTGKSCMKBCTRCYCTK----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Reverse Complement Reverse Complement WHRWTHWVAVAYAVAVDDKBAVMSACASAGV TTAAAAWAGASTTA WHRTTAAAAHAGASWTADKBAVMSACASAGV Direction: Forward Position #: 4 Overlap #: 14 Alignment: WHRWTHWVAVAYAVAVDDKBAVMSACASAGV ---TTAAAAWAGASTTA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Original Motif WHRTTAAAAHAGASWTADKBAVMSACASAGV AAAGRTMAAACTA AAAGRTHAAAMTAGASWTADKBAVMSACASAGV Direction: Forward Position #: 3 Overlap #: 11 Alignment: --WHRTTAAAAHAGASWTADKBAVMSACASAGV AAAGRTMAAACTA-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 5 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 CTCF Reverse Complement Original Motif GAKAGKTGGCTCWG YDRCCASYAGRKGGCRSYV RVBAGGTGGCDCWGYDRCC Direction: Backward Position #: 1 Overlap #: 14 Alignment: -----GAKAGKTGGCTCWG YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif GGMHMCWGHGCCACCTVBK TGGAGCACTGTGACAVCACAGTGG TGGRVCACTGTGMCACCWCHGTGG Direction: Forward Position #: 3 Overlap #: 19 Alignment: --GGMHMCWGHGCCACCTVBK--- TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif CCACHGWGGTGYCACAGTGVKCCA RAGKGMAGVRRGSRCASAGV VMABDVWGDDGBCACAGWGVKCCA Direction: Forward Position #: 1 Overlap #: 20 Alignment: CCACHGWGGTGYCACAGTGVKCCA RAGKGMAGVRRGSRCASAGV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif TGGRVCWCTGTGBCDHCWVHVTRV AGTGCTCCACTGTGGTGTCACAGT AGTGSTCCACTGTGBYGTCACAVTRV Direction: Forward Position #: 3 Overlap #: 22 Alignment: --TGGRVCWCTGTGBCDHCWVHVTRV AGTGCTCCACTGTGGTGTCACAGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif AGTGSTCCACTGTGBYGTCACAVTRV AMTGTGACACCACAGT AVTGTKMCACYRYRGTGTCACAVTRV Direction: Forward Position #: 1 Overlap #: 16 Alignment: AGTGSTCCACTGTGBYGTCACAVTRV AMTGTGACACCACAGT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement AVTGTKMCACYRYRGTGTCACAVTRV AGTGSWSCACTGTGAMAMCACAGTG AGTGBDVCACTGTGVYRHCACAGTGV Direction: Forward Position #: 1 Overlap #: 25 Alignment: AVTGTKMCACYRYRGTGTCACAVTRV AGTGSWSCACTGTGAMAMCACAGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement AGTGBDVCACTGTGVYRHCACAGTGV BAGGYCABHBTGACCKHV AGTRGGHCACYGTGACVBYACAGTGV Direction: Forward Position #: 3 Overlap #: 18 Alignment: AGTGBDVCACTGTGVYRHCACAGTGV --BAGGYCABHBTGACCKHV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement VCACTGTKVVGTCACMGTGDCCMACT MGGTCAGGGTGACCTRDBHV MVRYYRBGVDGDCMBVGTVVCCMACT Direction: Forward Position #: 1 Overlap #: 20 Alignment: VCACTGTKVVGTCACMGTGDCCMACT MGGTCAGGGTGACCTRDBHV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement MVRYYRBGVDGDCMBVGTVVCCMACT GGAGCACTGTGACACCACA VGABCABKGTGACABCRBVVCCMACT Direction: Forward Position #: 1 Overlap #: 19 Alignment: MVRYYRBGVDGDCMBVGTVVCCMACT GGAGCACTGTGACACCACA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Reverse Complement Reverse Complement AGTRGGVBBKGBTGTCACRBTGBTCV CKGGDTBDMMCTGG MDKGDKBDVHCKKGTCACRBTGBTCV Direction: Forward Position #: 1 Overlap #: 14 Alignment: AGTRGGVBBKGBTGTCACRBTGBTCV CKGGDTBDMMCTGG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 6 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 TFM11 Reverse Complement Reverse Complement TGTGTSWGTBTSTG TGTGTGDKTGTGTGTGTRTG TGTGTSWGTGTGTGTGTRTG Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGTGTSWGTBTSTG------ TGTGTGDKTGTGTGTGTRTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Original Motif Reverse Complement TGTGTSWGTGTGTGTGTRTG TGTGTGWGTGTGTGTGTG TGTGTGWGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 18 Alignment: TGTGTSWGTGTGTGTGTRTG TGTGTGWGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif CACACACACACACWCACACA TTCAGCACCATGGACAGCKCC TTCAGCACCAYRSACASMBVCWCACACA Direction: Forward Position #: 9 Overlap #: 13 Alignment: --------CACACACACACACWCACACA TTCAGCACCATGGACAGCKCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Original Motif TGTGTGWGBBYSTGTSMKTGGTGCTGAA VHRGGTCABDBTGMCCTB TVTGKGTSABBSTGTCCTBGGTGCTGAA Direction: Forward Position #: 2 Overlap #: 18 Alignment: TGTGTGWGBBYSTGTSMKTGGTGCTGAA -VHRGGTCABDBTGMCCTB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Original Motif TVTGKGTSABBSTGTCCTBGGTGCTGAA TGTGGTGTCACAGTGCTCC TKBKGTGTCACHGTGYYCBBGGTGCTGAA Direction: Forward Position #: 2 Overlap #: 18 Alignment: -TVTGKGTSABBSTGTCCTBGGTGCTGAA TGTGGTGTCACAGTGCTCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Original Motif TKBKGTGTCACHGTGYYCBBGGTGCTGAA TTTTTTTKTTKTTTAATTHW TTTTTTTKKTKTYWVAKTVHYCBBGGTGCTGAA Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----TKBKGTGTCACHGTGYYCBBGGTGCTGAA TTTTTTTKTTKTTTAATTHW------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement TTTTTTTKKTKTYWVAKTVHYCBBGGTGCTGAA CCACTGTGVTGTCACAGTGCTCCA YYWYTKTGDTGTCACAGTGCTCCAGGTGCTGAA Direction: Forward Position #: 1 Overlap #: 24 Alignment: TTTTTTTKKTKTYWVAKTVHYCBBGGTGCTGAA CCACTGTGVTGTCACAGTGCTCCA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Original Motif Reverse Complement YYWYTKTGDTGTCACAGTGCTCCAGGTGCTGAA TTTRKTTTHTTTTH TTTVTTTKBTKTYWCAGTGCTCCAGGTGCTGAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: YYWYTKTGDTGTCACAGTGCTCCAGGTGCTGAA TTTRKTTTHTTTTH------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TTTVTTTKBTKTYWCAGTGCTCCAGGTGCTGAA KTTTTTTKTTTTTTDAAB TTTKTTTKTTTTTTVARTGCTCCAGGTGCTGAA Direction: Forward Position #: 1 Overlap #: 18 Alignment: TTTVTTTKBTKTYWCAGTGCTCCAGGTGCTGAA KTTTTTTKTTTTTTDAAB--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif TTTKTTTKTTTTTTVARTGCTCCAGGTGCTGAA AGTGCTCCACTGTGGTGTCACAGT CTGTGGTGTCACAGTWKTKYTMMWTTTKTTTKTTTTTTVARTGCTCCA Direction: Backward Position #: 16 Overlap #: 9 Alignment: TTTKTTTKTTTTTTVARTGCTCCAGGTGCTGAA--------------- ------------------------AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 7 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Motif 13 Original Motif Reverse Complement AAAATKCTATT AAATAKATWTT AAAWWKMTATT Direction: Backward Position #: 1 Overlap #: 11 Alignment: AAAATKCTATT AAATAKATWTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Original Motif Reverse Complement AAAWWKMTATT AATCTGTTATT AAWHTGHTATT Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAWWKMTATT AATCTGTTATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 45 Original Motif Original Motif AAWHTGHTATT TAASTCTWTTTTAA WAABTSTTWTTTAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAWHTGHTATT--- TAASTCTWTTTTAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Original Motif Reverse Complement WAABTSTTWTTTAA TWAAAKACATTAAA TAAAWBWYATTWAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: WAABTSTTWTTTAA TWAAAKACATTAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Reverse Complement Reverse Complement TTWAATKWBWTTTA TAGTTTYAKCTTT TTWAATTAGTTTTAKCTTT Direction: Forward Position #: 7 Overlap #: 8 Alignment: TTWAATKWBWTTTA----- ------TAGTTTYAKCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 Combined Motif Original Motif Reverse Complement TTWAATTAGTTTTAKCTTT AAATGTGTTGT TTAAATKWGTTKTAKCTTT Direction: Forward Position #: 3 Overlap #: 11 Alignment: TTWAATTAGTTTTAKCTTT --AAATGTGTTGT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Reverse Complement TTAAATKWGTTKTAKCTTT TGAAAATATGTT TKAAAWTAKKTTTAKCTTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTAAATKWGTTKTAKCTTT TGAAAATATGTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Reverse Complement Original Motif AAAGYTAAAYRTAWTTTYA AAAAAAAAAAAAAT AAARHWAAAAAWATTTTYA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAAGYTAAAYRTAWTTTYA AAAAAAAAAAAAAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Reverse Complement Reverse Complement TKAAAATWTTTTTWHKTTT AAACAATYTTT WDAMAATTTTTTTWHKTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TKAAAATWTTTTTWHKTTT AAACAATYTTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Reverse Complement WDAMAATTTTTTTWHKTTT TTYAAACATYTT TTHAAAYATTTTTWHKTTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: WDAMAATTTTTTTWHKTTT TTYAAACATYTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 8 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Motif 9 Original Motif Reverse Complement TGAAAATSCTT TGAAAATATGTT TTGAAAATVYKT Direction: Backward Position #: 2 Overlap #: 11 Alignment: TGAAAATSCTT- TGAAAATATGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Original Motif Original Motif TTGAAAATVYKT TTTAATGTYTTTWA TTKAAWRTHTTTWA Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTGAAAATVYKT-- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Reverse Complement TTKAAWRTHTTTWA TTYAAACATYTT TTBAAAVWTYTTWA Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTKAAWRTHTTTWA TTYAAACATYTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Reverse Complement Original Motif TWAAMAWVTTTVAA AAAMATTGTTT WAAAAWTGTTTVAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TWAAMAWVTTTVAA AAAMATTGTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Reverse Complement Original Motif TTBAAACAWTTTTW TGGAGCACTGTGACAVCACAGTGG TTKRARCAHTKTKACAVCACAGTGG Direction: Forward Position #: 2 Overlap #: 13 Alignment: TTBAAACAWTTTTW----------- -TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Reverse Complement CCACTGTGVTGTYAYADTGKTKYAA GGAGCACTGTGACACCACA GGASCACTGTGAYRHCACADTGKTKYAA Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---CCACTGTGVTGTYAYADTGKTKYAA GGAGCACTGTGACACCACA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 46 Combined Motif Original Motif Original Motif GGASCACTGTGAYRHCACADTGKTKYAA ATAGGTTTAGYATA GGASCACTGTGAYRHCACATWGGTTTARYATA Direction: Forward Position #: 19 Overlap #: 10 Alignment: GGASCACTGTGAYRHCACADTGKTKYAA---- ------------------ATAGGTTTAGYATA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Reverse Complement Original Motif TATKKTAAACCWATGTGHKMTCACAGTGSTCC TAASTCTWTTTTAA TATKKTAAVYCTWTTTTAAMTCACAGTGSTCC Direction: Forward Position #: 6 Overlap #: 14 Alignment: TATKKTAAACCWATGTGHKMTCACAGTGSTCC -----TAASTCTWTTTTAA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 43 Combined Motif Original Motif Original Motif TATKKTAAVYCTWTTTTAAMTCACAGTGSTCC AAKGAAAGGCA TAWKGWAAGKCWWTTTTAAMTCACAGTGSTCC Direction: Forward Position #: 2 Overlap #: 11 Alignment: TATKKTAAVYCTWTTTTAAMTCACAGTGSTCC -AAKGAAAGGCA-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 24 Combined Motif Original Motif Reverse Complement TAWKGWAAGKCWWTTTTAAMTCACAGTGSTCC TTWATGWCTTT TAWTKWAWGDCTTTTTTAAMTCACAGTGSTCC Direction: Forward Position #: 4 Overlap #: 11 Alignment: TAWKGWAAGKCWWTTTTAAMTCACAGTGSTCC ---TTWATGWCTTT------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 9 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Motif 11 Original Motif Original Motif AACATATTTTCA AAMATGTTTMAA AACATRTTTHMA Direction: Forward Position #: 1 Overlap #: 12 Alignment: AACATATTTTCA AAMATGTTTMAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 45 Reverse Complement Reverse Complement TYHAAAKATGTT TTAAAAWAGASTTA TTAAAADAKRBTTA Direction: Forward Position #: 1 Overlap #: 12 Alignment: TYHAAAKATGTT-- TTAAAAWAGASTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Original Motif Original Motif TTAAAADAKRBTTA TTTAATGTYTTTWA TTWAAWGWBWTTTA Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTAAAADAKRBTTA TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AgTGCTCCACTGTGgTGTCACAgT Combined Motif Original Motif Original Motif TTWAAWGWBWTTTA AGTGCTCCACTGTGGTGTCACAGT BWTTTAWKTRMTBHAGTGCTCCACTGTGGT Direction: Backward Position #: 7 Overlap #: 8 Alignment: ----------------TTWAAWGWBWTTTA ------AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Original Motif Reverse Complement BWTTTAWKTRMTBHAGTGCTCCACTGTGGT TGTGTGWGTGTGTGTGTG TDTKTRWKTGWKYVWGTGCTCCACTGTGGT Direction: Forward Position #: 1 Overlap #: 18 Alignment: BWTTTAWKTRMTBHAGTGCTCCACTGTGGT TGTGTGWGTGTGTGTGTG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AmTGTGACACCACAGT Combined Motif Reverse Complement Reverse Complement ACCACAGTGGAGCACWVMYWCAYWKARAHA ACTGTGGTGTCACART ACCACWGTGGWGYMMMAVYWCAYWKARAHA Direction: Forward Position #: 4 Overlap #: 16 Alignment: ACCACAGTGGAGCACWVMYWCAYWKARAHA ---ACTGTGGTGTCACART----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif ACCACWGTGGWGYMMMAVYWCAYWKARAHA TGGAGCACTGTGACAVCACAGTGG TGGASCACTGTGRHRYCACAGTDVAYWKARAHA Direction: Forward Position #: 4 Overlap #: 21 Alignment: ---ACCACWGTGGWGYMMMAVYWCAYWKARAHA TGGAGCACTGTGACAVCACAGTGG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Reverse Complement TDTKTRWKTVHACTGTGKKDKCACAGTGSTCCA TGTGTGDKTGTGTGTGTRTG TGTKTGWKTGTRYKKKKGKGKCACAGTGSTCCA Direction: Forward Position #: 1 Overlap #: 20 Alignment: TDTKTRWKTVHACTGTGKKDKCACAGTGSTCCA TGTGTGDKTGTGTGTGTRTG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement TGGASCACTGTGRCRCRYRYMMACAYWCAYACA AGTGSWSCACTGTGAMAMCACAGTG AGTGGASCACTGTGACAMVAMHVHDCAYWCAYACA Direction: Forward Position #: 3 Overlap #: 23 Alignment: --TGGASCACTGTGRCRCRYRYMMACAYWCAYACA AGTGSWSCACTGTGAMAMCACAGTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Original Motif Original Motif AGTGGASCACTGTGACAMVAMHVHDCAYWCAYACA AAAAAAAAAAAAAT AGTGGASCACTGTGACAMVAMHVHDCAYWCAMAAAAAAAAAAAT Direction: Forward Position #: 31 Overlap #: 5 Alignment: AGTGGASCACTGTGACAMVAMHVHDCAYWCAYACA--------- ------------------------------AAAAAAAAAAAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 10 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Motif 45 Original Motif Reverse Complement AAAMATTGTTT TTAAAAWAGASTTA TTAAAAHAKWGTTW Direction: Forward Position #: 4 Overlap #: 11 Alignment: ---AAAMATTGTTT TTAAAAWAGASTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 13 Reverse Complement Original Motif WAACWYTHTTTTAA AAWATRTATTT AAAMTNTATTTTAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: WAACWYTHTTTTAA AAWATRTATTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Reverse Complement Reverse Complement TTAAAATANAYTTT TGAAAATATGTT TKAAAATATRTTTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTAAAATANAYTTT TGAAAATATGTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif TKAAAATATRTTTT TGAAAATSCTT TGAAAATVYTTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TKAAAATATRTTTT TGAAAATSCTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Reverse Complement Original Motif AAAAAKBATTTTCA AATAACAGATT AAWAAMRGATTTTCA Direction: Forward Position #: 2 Overlap #: 10 Alignment: -AAAAAKBATTTTCA AATAACAGATT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Reverse Complement Original Motif TGAAAATCKRTTWTT TTTAATGTYTTTWA TKWAAWKTYTTTWWT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGAAAATCKRTTWTT TTTAATGTYTTTWA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Original Motif Reverse Complement TKWAAWKTYTTTWWT ATTTTTTTTTTTTT ATTTWWTTTTTTTTWT Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TKWAAWKTYTTTWWT ATTTTTTTTTTTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Original Motif Reverse Complement ATTTWWTTTTTTTTWT AATAGYATTTT AWTWDHWTTTTTTTWT Direction: Forward Position #: 1 Overlap #: 11 Alignment: ATTTWWTTTTTTTTWT AATAGYATTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 29 Reverse Complement Reverse Complement AWAAAAAAAWHHWAWT TAGCAATAAAT TAKMAAWAAATHHWAWT Direction: Forward Position #: 2 Overlap #: 10 Alignment: -AWAAAAAAAWHHWAWT TAGCAATAAAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 Combined Motif Original Motif Original Motif TAKMAAWAAATHHWAWT ACAACACATTT TAACAAYAMATTTWAWT Direction: Forward Position #: 3 Overlap #: 11 Alignment: TAKMAAWAAATHHWAWT --ACAACACATTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 11 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Motif 9 Original Motif Original Motif AAMATGTTTMAA AACATATTTTCA AACATRTTTHMA Direction: Backward Position #: 1 Overlap #: 12 Alignment: AAMATGTTTMAA AACATATTTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Reverse Complement Original Motif TYHAAAKATGTT TTTAATGTYTTTWA TTTAAWGWTKTTWA Direction: Forward Position #: 1 Overlap #: 12 Alignment: TYHAAAKATGTT-- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 45 Reverse Complement Original Motif TWAARAWCWTTAAA TAASTCTWTTTTAA TAAVTMTHTTTTAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: TWAARAWCWTTAAA TAASTCTWTTTTAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Reverse Complement TTAAAADARABTTA BTTHAAAAAAYAAAAAAR TTTAAAAAAAYWWAAAAR Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTAAAADARABTTA---- BTTHAAAAAAYAAAAAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif KTTTTWWMTTTTTTTAAA TTTTTTTKTTKTTTAATTHW KTTTTTTHTTTTTTTWWAATTHW Direction: Forward Position #: 4 Overlap #: 15 Alignment: KTTTTWWMTTTTTTTAAA----- ---TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Reverse Complement Original Motif WHAATTWWAAAAAAAHAAAAAAR AAAGGTCAAAGGTCAAC WHAATTWWAAAAAARGTMAAARGTCAAC Direction: Forward Position #: 12 Overlap #: 12 Alignment: WHAATTWWAAAAAAAHAAAAAAR----- -----------AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Reverse Complement Reverse Complement GTTGACMTTTRACMTTTTTTWWAATTDW ATTTTTTTTTTTTT GTTGACATTTTTTYTTTTTTWWAATTDW Direction: Forward Position #: 7 Overlap #: 14 Alignment: GTTGACMTTTRACMTTTTTTWWAATTDW ------ATTTTTTTTTTTTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Combined Motif Original Motif Original Motif GTTGACATTTTTTYTTTTTTWWAATTDW AAWATRTATTT GTTRAHATDTATTTTTTTTTWWAATTDW Direction: Forward Position #: 4 Overlap #: 11 Alignment: GTTGACATTTTTTYTTTTTTWWAATTDW ---AAWATRTATTT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 46 Combined Motif Original Motif Reverse Complement GTTRAHATDTATTTTTTTTTWWAATTDW TATKCTAAACCTAT ATTTTTTTTTWWAATTDWCTWAACMTATGTTRAHATDTATTTTTTT Direction: Backward Position #: 19 Overlap #: 10 Alignment: ----GTTRAHATDTATTTTTTTTTWWAATTDW ------------------TATKCTAAACCTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 12 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif AAATGTGTTGT AGTGCTCCACTGTGGTGTCACAGT AGTGCTCMAMTGTGKTGTCACAGT Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------AAATGTGTTGT------ AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement ACTGTGACARCACAYTYGAGCACT CCACTGTGVTGTCACAGTGCTCCA CCACTGTGAYRWCACABTBSWSCACT Direction: Forward Position #: 3 Overlap #: 22 Alignment: --ACTGTGACARCACAYTYGAGCACT CCACTGTGVTGTCACAGTGCTCCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 13 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Motif 45 Original Motif Reverse Complement AAWATRTATTT TTAAAAWAGASTTA AAAAATAKABTTTT Direction: Backward Position #: 2 Overlap #: 11 Alignment: --AAWATRTATTT- TTAAAAWAGASTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Reverse Complement AAAAATAKABTTTT TGAAAATATGTT TRAAAATATRTTTTT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -AAAAATAKABTTTT TGAAAATATGTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Reverse Complement Original Motif AAAAAKATATTTTKA AAAATKCTATT AAAAWKMTATTTTKA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAAAKATATTTTKA AAAATKCTATT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Original Motif Original Motif AAAAWKMTATTTTKA AAAMATTGTTT AAAAATHKWTTTTKA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAAWKMTATTTTKA AAAMATTGTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Original Motif Original Motif AAAAATHKWTTTTKA AATAACAGATT AAWAAYAGATTTTKA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAAATHKWTTTTKA AATAACAGATT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Reverse Complement Reverse Complement TYAAAATCTKTTWTT TWAAAKACATTAAA THAAADWCATTWAWT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TYAAAATCTKTTWTT TWAAAKACATTAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Reverse Complement Reverse Complement AWTWAATGWDTTTHA TTYAAACATYTT WTTAAAYRTBTTTHA Direction: Forward Position #: 1 Overlap #: 12 Alignment: AWTWAATGWDTTTHA TTYAAACATYTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 12 Original Motif Original Motif WTTAAAYRTBTTTHA ACAACACATTT AYWAMACATTTTTHA Direction: Forward Position #: 1 Overlap #: 11 Alignment: WTTAAAYRTBTTTHA ACAACACATTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 24 Reverse Complement Reverse Complement THAAAAATGTRTWKT TTWATGWCTTT TTWAWRAMTKTRTWKT Direction: Forward Position #: 2 Overlap #: 10 Alignment: -THAAAAATGTRTWKT TTWATGWCTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Reverse Complement Original Motif AYWAMARARTMWTWAA AAAAAAAAAAAAAT AAAAAAAAAAAAWTAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AYWAMARARTMWTWAA AAAAAAAAAAAAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 14 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Motif 33 Reverse Complement Original Motif TTATATYATTA TTTAATGTYTTTWA TTTWATRTYWTTAA Direction: Forward Position #: 3 Overlap #: 11 Alignment: --TTATATYATTA- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Reverse Complement TTAAWKAKATWAAA WHAATTAAARAARAAAAAAA TTAAADWKAWAAAARAAAAAAA Direction: Forward Position #: 3 Overlap #: 12 Alignment: TTAAWKAKATWAAA-------- --WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Reverse Complement Original Motif TTTTTTTKTTTTWTRWHTTTAA ATGTWTTCATTMAT WTKTTTTBWTTHATRWHTTTAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTTTTTTKTTTTWTRWHTTTAA ATGTWTTCATTMAT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Original Motif Reverse Complement WTKTTTTBWTTHATRWHTTTAA ATTTTTTTTTTTTT ATTTTTTTTTTTWTRWHTTTAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: WTKTTTTBWTTHATRWHTTTAA ATTTTTTTTTTTTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement TTAAADWKAWAAAAAAAAAAAT TGAAAATATGTT TTAAADWKAWAAAWRAAAAWATGTT Direction: Forward Position #: 14 Overlap #: 9 Alignment: TTAAADWKAWAAAAAAAAAAAT--- -------------TGAAAATATGTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Reverse Complement AACATWTTTTMWTTTWTRWHTTTAA TWTTGACAYAGA TWTTGACAYWRAAACATWTTTTMWT Direction: Backward Position #: 1 Overlap #: 12 Alignment: AACATWTTTTMWTTTWTRWHTTTAA -------------TWTTGACAYAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 15 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Motif 46 Reverse Complement Original Motif TAGTTTYAKCTTT ATAGGTTTAGYATA ATAGKTTTAGCWTW Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TAGTTTYAKCTTT ATAGGTTTAGYATA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif WAWGCTAAAYCTAT AAAGGTCAAAGGTCAAC AAAGGTCAAAGSTMAAYCTAT Direction: Forward Position #: 8 Overlap #: 10 Alignment: -------WAWGCTAAAYCTAT AAAGGTCAAAGGTCAAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Original Motif Reverse Complement AAAGGTCAAAGSTMAAYCTAT ATTTTTTTTTTTTT TTTTTTTTAWWKTTAAAGGTCAAAGSTMA Direction: Backward Position #: 9 Overlap #: 6 Alignment: AAAGGTCAAAGSTMAAYCTAT-------- ---------------ATTTTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 16 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif TCTKTGTCAAWA TGGAGCACTGTGACAVCACAGTGG TGGAGCWCTGTGWCAAHACAGTGG Direction: Forward Position #: 7 Overlap #: 12 Alignment: ------TCTKTGTCAAWA------ TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement TGGAGCWCTGTGWCAAHACAGTGG AGTGSWSCACTGTGAMAMCACAGTG AGTGGAGCACTGTGWCAMCACAGTGG Direction: Forward Position #: 3 Overlap #: 23 Alignment: --TGGAGCWCTGTGWCAAHACAGTGG AGTGSWSCACTGTGAMAMCACAGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Reverse Complement CCACTGTGYTGWCACAGTGCTCCACT GGAGCACTGTGACACCACA GGASCACTGTGWYRHCACAGTGCTCCACT Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---CCACTGTGYTGWCACAGTGCTCCACT GGAGCACTGTGACACCACA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif AGTGGAGCACTGTGDKKWCACAGTGSTCC AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGKTGTCACAGTGSTCC Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTGGAGCACTGTGDKKWCACAGTGSTCC AGTGCTCCACTGTGGTGTCACAGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif AGTGSWSCACTGTGKTGTCACAGTGSTCC AMTGTGACACCACAGT AVTGYKMCACYRYRGTGTCACAGTGSTCC Direction: Forward Position #: 1 Overlap #: 16 Alignment: AGTGSWSCACTGTGKTGTCACAGTGSTCC AMTGTGACACCACAGT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement AVTGYKMCACYRYRGTGTCACAGTGSTCC BTTHAAAAAAYAAAAAAR AVTGYKMCACYRYRGTGTCACAGTGSTYCAAAAAAYAAAAAAR Direction: Forward Position #: 26 Overlap #: 4 Alignment: AVTGYKMCACYRYRGTGTCACAGTGSTCC-------------- -------------------------BTTHAAAAAAYAAAAAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif KTTTTTTKTTTTTTGMASCACTGTGACACKMKMGTGYYMCAVT TTTTTTTKTTKTTTAATTHW KTTTTTTKTTTTTTKWWTMABTVTGACACKMKMGTGYYMCAVT Direction: Forward Position #: 5 Overlap #: 20 Alignment: KTTTTTTKTTTTTTGMASCACTGTGACACKMKMGTGYYMCAVT ----TTTTTTTKTTKTTTAATTHW------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement KTTTTTTKTTTTTTKWWTMABTVTGACACKMKMGTGYYMCAVT TGRCCTKTGHCCKAB KTTTTTTKDYYTTTGHHYBABTVTGACACKMKMGTGYYMCAVT Direction: Forward Position #: 7 Overlap #: 15 Alignment: KTTTTTTKTTTTTTKWWTMABTVTGACACKMKMGTGYYMCAVT ------TGRCCTKTGHCCKAB---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Reverse Complement KTTTTTTKDYYTTTGHHYBABTVTGACACKMKMGTGYYMCAVT GTTGACCTTTGACCTTT GTTGWYYTTTGACCTTTGHHYBABTVTGACACKMKMGTGYYMCAVT Direction: Forward Position #: 4 Overlap #: 14 Alignment: ---KTTTTTTKDYYTTTGHHYBABTVTGACACKMKMGTGYYMCAVT GTTGACCTTTGACCTTT----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Reverse Complement Reverse Complement AVTGYKMCACYRYRGTGTCAVABTVKDHCAAAGGTCAAAKKWCAAC ATYAATGAAWACAT GAAWACATRKTMAWAVTGYKMCACYRYRGTGTCAVABTVKDHCAAAGGTCAAAK Direction: Backward Position #: 9 Overlap #: 6 Alignment: AVTGYKMCACYRYRGTGTCAVABTVKDHCAAAGGTCAAAKKWCAAC-------- ----------------------------------------ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 17 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 NR1H2RXRA Reverse Complement Original Motif GAGGTCAGAAG AAAGGTCAAAGGTCAAC ARAGGTCARARGTCAAC Direction: Forward Position #: 2 Overlap #: 11 Alignment: -GAGGTCAGAAG----- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Original Motif ARAGGTCARARGTCAAC BTRGGDCARAGGKCA VDAGGTCARAGGTCAAC Direction: Forward Position #: 1 Overlap #: 15 Alignment: ARAGGTCARARGTCAAC BTRGGDCARAGGKCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 18 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 NR1H2RXRA Original Motif Original Motif CAAAGTCCAGC AAAGGTCAAAGGTCAAC AAAGGTCAAAGKYCARC Direction: Forward Position #: 7 Overlap #: 11 Alignment: ------CAAAGTCCAGC AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Original Motif Reverse Complement AAAGGTCAAAGKYCARC ABCACAGTGGAGCACTG AAAGRTCAMAGTBSAGCACTG Direction: Forward Position #: 5 Overlap #: 13 Alignment: AAAGGTCAAAGKYCARC---- ----ABCACAGTGGAGCACTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Reverse Complement Reverse Complement CAGTGCTSBACTYTGAMCTTT AGTGCTCCACTGTGDTG CAGTGCTCCACTKTGVHSTTT Direction: Forward Position #: 2 Overlap #: 17 Alignment: CAGTGCTSBACTYTGAMCTTT -AGTGCTCCACTGTGDTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Reverse Complement AAASHBCAYAGTGGAGCACTG ACTGTGACACCACAGTGGAGCACT ACTGWRACABCACAGTGGAGCACTG Direction: Forward Position #: 5 Overlap #: 20 Alignment: ----AAASHBCAYAGTGGAGCACTG ACTGTGACACCACAGTGGAGCACT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Reverse Complement CAGTGCTCCACTGTGBTGTMWCAGT AGTGSWSCACTGTGAMAMCACAGTG CAGTGCTSCACTGTGVHVHCACAGTG Direction: Forward Position #: 2 Overlap #: 24 Alignment: CAGTGCTCCACTGTGBTGTMWCAGT- -AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Original Motif CAGTGCTSCACTGTGVHVHCACAGTG TGGAGCACTGTGACAVCACAGTGG CAGTGSWSCACTGTGACAHCACAGTGG Direction: Forward Position #: 4 Overlap #: 23 Alignment: CAGTGCTSCACTGTGVHVHCACAGTG- ---TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Original Motif CAGTGSWSCACTGTGACAHCACAGTGG TGTGGTGTCACAGTGCTCC YRKKGBRKCACWGTGMYMCCACAGTGG Direction: Forward Position #: 1 Overlap #: 19 Alignment: CAGTGSWSCACTGTGACAHCACAGTGG TGTGGTGTCACAGTGCTCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif CCACTGTGGRMRCACWGTGRMVCRRKM TTCAGCACCATGGACAGCKCC CTKSARVMMCWKKGACASVDBCCACTGT Direction: Backward Position #: 2 Overlap #: 20 Alignment: CCACTGTGGRMRCACWGTGRMVCRRKM- -------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 19 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Motif 43 Reverse Complement Reverse Complement CTTTCTCT TGCCTTTCYTT CTTTCTYTTGC Direction: Backward Position #: 1 Overlap #: 8 Alignment: ---CTTTCTCT TGCCTTTCYTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Original Motif GCAAKAGAAAG TCTKTGTCAAWA TCTKTGKCAADAGAAAG Direction: Forward Position #: 7 Overlap #: 6 Alignment: ------GCAAKAGAAAG TCTKTGTCAAWA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 21 Original Motif Original Motif TCTKTGKCAADAGAAAG CTGCTTTCCMAA CTKCTTTSBCAADAGAAAG Direction: Forward Position #: 3 Overlap #: 10 Alignment: --TCTKTGKCAADAGAAAG CTGCTTTCCMAA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 44 Reverse Complement Reverse Complement CTTTCTDTTGBSAAAGYAG TTCTTYCATT TYYTTCYATTGBSAAAGYAG Direction: Forward Position #: 2 Overlap #: 9 Alignment: -CTTTCTDTTGBSAAAGYAG TTCTTYCATT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Original Motif Reverse Complement TYYTTCYATTGBSAAAGYAG ATTTTTTTTTTTTT ATTTTTYTWTTKTBAAAGYAG Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TYYTTCYATTGBSAAAGYAG ATTTTTTTTTTTTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Reverse Complement ATTTTTYTWTTKTBAAAGYAG TAGTTTYAKCTTT TAKTTTTWTYTTTTBAAAGYAG Direction: Forward Position #: 2 Overlap #: 12 Alignment: -ATTTTTYTWTTKTBAAAGYAG TAGTTTYAKCTTT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 41 Original Motif Original Motif TAKTTTTWTYTTTTBAAAGYAG TGGAGGAAA GAAATGRARTAKTTTTWTYTTTTBAA Direction: Backward Position #: 5 Overlap #: 5 Alignment: TAKTTTTWTYTTTTBAAAGYAG---- -----------------TGGAGGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif GAAATGRARTAKTTTTWTYTTTTBAA TTTTTTTKTTKTTTAATTHW GAAATKDWDTWKTTTTTTHWTTHDAA Direction: Forward Position #: 5 Overlap #: 20 Alignment: GAAATGRARTAKTTTTWTYTTTTBAA ----TTTTTTTKTTKTTTAATTHW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif TTDHAAWHAAAAAARWADWDRATTTC AAAGGTCAAAGGTCAAC AAAGGTCAACAAARRTYTTDHAAWHAAAAAARWADW Direction: Backward Position #: 11 Overlap #: 7 Alignment: TTDHAAWHAAAAAARWADWDRATTTC---------- -------------------AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 20 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 20 CTCF Original Motif Reverse Complement TCCTCCTGGAA BMSMGCCYMCTKSTGGMHM BMSMGCCTCCTCCTGGAAM Direction: Forward Position #: 8 Overlap #: 11 Alignment: -------TCCTCCTGGAA- BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 47 Reverse Complement Original Motif YTTCCAGGAGGAGGCRSYV YGCCACCTDSTGGY YGCCHCCWGSWGGMGGCRSYV Direction: Forward Position #: 3 Overlap #: 12 Alignment: --YTTCCAGGAGGAGGCRSYV YGCCACCTDSTGGY------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Combined Motif Reverse Complement Original Motif BMSMGCCYCCWSCWGGHGGCK CTGCTTTCCMAA BMSMGCCYCCWSCWGGCTGCTTTCCMAA Direction: Forward Position #: 17 Overlap #: 5 Alignment: BMSMGCCYCCWSCWGGHGGCK------- ----------------CTGCTTTCCMAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Combined Motif Original Motif Reverse Complement BMSMGCCYCCWSCWGGCTGCTTTCCMAA ATYAATGAAWACAT BMSMGCCYCCWSCWGGCTGCTTTMYHAATGAAWACAT Direction: Forward Position #: 24 Overlap #: 5 Alignment: BMSMGCCYCCWSCWGGCTGCTTTCCMAA--------- -----------------------ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Combined Motif Original Motif Reverse Complement BMSMGCCYCCWSCWGGCTGCTTTMYHAATGAAWACAT GCCACGTGSD BMSMGCCMCSTGSDGGCTGCTTTMYHAATGAAWACAT Direction: Forward Position #: 5 Overlap #: 10 Alignment: BMSMGCCYCCWSCWGGCTGCTTTMYHAATGAAWACAT ----GCCACGTGSD----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Reverse Complement Original Motif ATGTWTTCATTDKYAAAGCAGCCDSCASGYGGCRSYV ATTCTGTRAAG ATGTWTTMWTYTGTAAAGCAGCCDSCASGYGGCRSYV Direction: Forward Position #: 8 Overlap #: 11 Alignment: ATGTWTTCATTDKYAAAGCAGCCDSCASGYGGCRSYV -------ATTCTGTRAAG------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Reverse Complement Reverse Complement BMSMGCCMCSTGSDGGCTGCTTTACAKAWYAAWACAT DCCACGTGCV BMSMGCCACGTGCDGGCTGCTTTACAKAWYAAWACAT Direction: Forward Position #: 5 Overlap #: 10 Alignment: BMSMGCCMCSTGSDGGCTGCTTTACAKAWYAAWACAT ----DCCACGTGCV----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Reverse Complement BMSMGCCACGTGCDGGCTGCTTTACAKAWYAAWACAT GGYGCTGTCCATGGTGCTGAA BMSVGCSMYGTSCVKGSTGCTKDACAKAWYAAWACAT Direction: Forward Position #: 4 Overlap #: 21 Alignment: BMSMGCCACGTGCDGGCTGCTTTACAKAWYAAWACAT ---GGYGCTGTCCATGGTGCTGAA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 22 Combined Motif Reverse Complement Original Motif ATGTWTTKWTYTGTDRAGCASCYBGSACMRSGCVSYV TTTATGGTGAGCAT ATGTWTTTTTHTGKTGAGCATCYBGSACMRSGCVSYV Direction: Forward Position #: 8 Overlap #: 14 Alignment: ATGTWTTKWTYTGTDRAGCASCYBGSACMRSGCVSYV -------TTTATGGTGAGCAT---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 30 Reverse Complement Reverse Complement BMSVGCSMYGTSCVKGATGCTCAYCAHAAAAAWACAT AAAAGCAGCAA GCAAAAAARMABMSVGCSMYGTSCVKGATGCTCAYCAHAAA Direction: Backward Position #: 5 Overlap #: 7 Alignment: BMSVGCSMYGTSCVKGATGCTCAYCAHAAAAAWACAT---- ------------------------------AAAAGCAGCAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 21 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Motif 22 Original Motif Reverse Complement CTGCTTTCCMAA ATGCTCACCATAAA AAMTGCTYWCCAWA Direction: Backward Position #: 3 Overlap #: 12 Alignment: CTGCTTTCCMAA-- ATGCTCACCATAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Original Motif TWTGGWKAGCAYTT KTTTTTTKTTTTTTDAAB KTTTTTTKTTTTTTGRAKAGCAYTT Direction: Forward Position #: 12 Overlap #: 7 Alignment: -----------TWTGGWKAGCAYTT KTTTTTTKTTTTTTDAAB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Original Motif KTTTTTTKTTTTTTGRAKAGCAYTT TTCAGCACCATGGACAGCKCC KTTTTTTKTTTTTTGDWCAGCACYTTGGACAGCKCC Direction: Forward Position #: 16 Overlap #: 10 Alignment: KTTTTTTKTTTTTTGRAKAGCAYTT----------- ---------------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Reverse Complement Reverse Complement GGYGCTGTCCAAMGTGCTGWHCAAAAAAYAAAAAAR ACTGTGGTGTCACART ACKGTGSTGTCMMAVKTGCTGWHCAAAAAAYAAAAAAR Direction: Forward Position #: 3 Overlap #: 14 Alignment: --GGYGCTGTCCAAMGTGCTGWHCAAAAAAYAAAAAAR ACTGTGGTGTCACART---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement ACKGTGSTGTCMMAVKTGCTGWHCAAAAAAYAAAAAAR ACTGTGACACCACAGTGGAGCACT ACTGTGAYRYCACAGTKGMKCACYAAAAAAYAAAAAAR Direction: Forward Position #: 1 Overlap #: 24 Alignment: ACKGTGSTGTCMMAVKTGCTGWHCAAAAAAYAAAAAAR ACTGTGACACCACAGTGGAGCACT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement ACTGTGAYRYCACAGTKGMKCACYAAAAAAYAAAAAAR CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVTGTCACAGTGSHBCACYAAAAAAYAAAAAAR Direction: Forward Position #: 3 Overlap #: 22 Alignment: --ACTGTGAYRYCACAGTKGMKCACYAAAAAAYAAAAAAR CCACTGTGVTGTCACAGTGCTCCA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement CCACTGTGVTGTCACAGTGSHBCACYAAAAAAYAAAAAAR GGAGCACTGTGACACCACA CCACTGTGGKRKCACWGTGVCACMMYAAAAAAYAAAAAAR Direction: Forward Position #: 9 Overlap #: 19 Alignment: CCACTGTGVTGTCACAGTGSHBCACYAAAAAAYAAAAAAR --------GGAGCACTGTGACACCACA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Original Motif Reverse Complement CCACTGTGGKRKCACWGTGVCACMMYAAAAAAYAAAAAAR ATYAATGAAWACAT TATHAAWBAAAAMACCACTGTGGKRKCACWGTGVCACMMYA Direction: Backward Position #: 2 Overlap #: 13 Alignment: CCACTGTGGKRKCACWGTGVCACMMYAAAAAAYAAAAAAR- ---------------------------ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 22 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 22 Motif 23 Original Motif Reverse Complement TTTATGGTGAGCAT ATYAATGAAWACAT WTTAWKGWRARCAT Direction: Backward Position #: 1 Overlap #: 14 Alignment: TTTATGGTGAGCAT ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 46 Reverse Complement Original Motif ATGKTKWCYWTAAW ATAGGTTTAGYATA ATAKGTTTASYATAAW Direction: Forward Position #: 3 Overlap #: 12 Alignment: --ATGKTKWCYWTAAW ATAGGTTTAGYATA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Original Motif Original Motif ATAKGTTTASYATAAW TTTAATGTYTTTWA TTWWATGTTTWBHATAAW Direction: Forward Position #: 3 Overlap #: 12 Alignment: --ATAKGTTTASYATAAW TTTAATGTYTTTWA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Combined Motif Original Motif Reverse Complement TTWWATGTTTWBHATAAW TTYGGAAAGCAG TTWWATGTTTTTYRKAAAGCAG Direction: Forward Position #: 11 Overlap #: 8 Alignment: TTWWATGTTTWBHATAAW---- ----------TTYGGAAAGCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Reverse Complement Original Motif CTGCTTTYMMAAAAACATWWAA AAAGGTCAAAGGTCAAC CTGCTTTYMMAAAAASRTHAAAGGTCAAC Direction: Forward Position #: 13 Overlap #: 10 Alignment: CTGCTTTYMMAAAAACATWWAA------- ------------AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Reverse Complement Reverse Complement GTTGACCTTTDAMSTTTTTYRKAAAGCAG TAGTTTYAKCTTT GTTGWMSTTTBABCTTTTTYRKAAAGCAG Direction: Forward Position #: 5 Overlap #: 13 Alignment: GTTGACCTTTDAMSTTTTTYRKAAAGCAG ----TAGTTTYAKCTTT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Reverse Complement Reverse Complement CTGCTTTYMMAAAAAGBTVAAASYWCAAC CTTKACAGAAT CTGCTTTHCARAAWAGBTVAAASYWCAAC Direction: Forward Position #: 4 Overlap #: 11 Alignment: CTGCTTTYMMAAAAAGBTVAAASYWCAAC ---CTTKACAGAAT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Combined Motif Reverse Complement Reverse Complement GTTGWKSTTTBABCTWTTMTGHAAAGCAG GAGGTCAGAAG GTTGWKSTTTBABCTWTTMTGHAAAGMRGTCAGAAG Direction: Forward Position #: 26 Overlap #: 4 Alignment: GTTGWKSTTTBABCTWTTMTGHAAAGCAG------- -------------------------GAGGTCAGAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 31 Combined Motif Original Motif Original Motif GTTGWKSTTTBABCTWTTMTGHAAAGMRGTCAGAAG TTGTTGATTTT GTTGTTGWTTTWBCTWTTMTGHAAAGMRGTCAGAAG Direction: Forward Position #: 2 Overlap #: 11 Alignment: GTTGWKSTTTBABCTWTTMTGHAAAGMRGTCAGAAG -TTGTTGATTTT------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 24 Reverse Complement Reverse Complement CTTCTGACKYCTTTHCARAAWAGBWAAAWCAACAAC TTWATGWCTTT YTTMTGACTTYTTTHCARAAWAGBWAAAWCAACAAC Direction: Forward Position #: 1 Overlap #: 11 Alignment: CTTCTGACKYCTTTHCARAAWAGBWAAAWCAACAAC TTWATGWCTTT------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 23 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Motif 49 Original Motif Reverse Complement ATGTWTTCATTMAT ATTTTTTTTTTTTT ATKTTTTYWTTHWT Direction: Forward Position #: 1 Overlap #: 14 Alignment: ATGTWTTCATTMAT ATTTTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif ATKTTTTYWTTHWT TTTTTTTKTTKTTTAATTHW ATTTTTTTTTTTTTTTAATTHW Direction: Forward Position #: 3 Overlap #: 12 Alignment: ATKTTTTYWTTHWT-------- --TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Original Motif Original Motif ATTTTTTTTTTTTTTTAATTHW KTTTTTTKTTTTTTDAAB WTTTTTTTTTTTTTKWADTTHW Direction: Forward Position #: 1 Overlap #: 18 Alignment: ATTTTTTTTTTTTTTTAATTHW KTTTTTTKTTTTTTDAAB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 24 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 24 Motif 33 Reverse Complement Original Motif TTWATGWCTTT TTTAATGTYTTTWA TTTAATGTCTTTWA Direction: Forward Position #: 2 Overlap #: 11 Alignment: -TTWATGWCTTT-- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 31 Combined Motif Original Motif Original Motif TTTAATGTCTTTWA TTGTTGATTTT TTTRWTGWYTTTWA Direction: Forward Position #: 2 Overlap #: 11 Alignment: TTTAATGTCTTTWA -TTGTTGATTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Reverse Complement Original Motif TWAAAMWCAWMAAA AAAAAAAAAAAAAT WAAAAAAMAAAAAW Direction: Forward Position #: 1 Overlap #: 14 Alignment: TWAAAMWCAWMAAA AAAAAAAAAAAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 13 Reverse Complement Original Motif WTTTTTYTTTTTTW AAWATRTATTT AATWTDTHTTTTTTW Direction: Forward Position #: 2 Overlap #: 10 Alignment: -WTTTTTYTTTTTTW AAWATRTATTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 30 Combined Motif Original Motif Original Motif AATWTDTHTTTTTTW TTGCTGCTTTT AWTDYTKCTTTTTTW Direction: Forward Position #: 2 Overlap #: 11 Alignment: AATWTDTHTTTTTTW -TTGCTGCTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif AWTDYTKCTTTTTTW KTTTTTTKTTTTTTDAAB AWTTTTTYTTTTTTTTDAAB Direction: Forward Position #: 3 Overlap #: 13 Alignment: AWTDYTKCTTTTTTW----- --KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Reverse Complement AWTTTTTYTTTTTTTTDAAB TTTRKTTTHTTTTH ATTTDTTTTTTTTTWTDAAB Direction: Forward Position #: 2 Overlap #: 14 Alignment: AWTTTTTYTTTTTTTTDAAB -TTTRKTTTHTTTTH----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif ATTTDTTTTTTTTTWTDAAB TTTTTTTKTTKTTTAATTHW ATTTTTTTTTTTTTTTKWADTTHW Direction: Forward Position #: 5 Overlap #: 16 Alignment: ATTTDTTTTTTTTTWTDAAB---- ----TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Reverse Complement ATTTTTTTTTTTTTTTKWADTTHW TAGTTTYAKCTTT TAKTTTTWKYTTTTTTTKWADTTHW Direction: Forward Position #: 2 Overlap #: 12 Alignment: -ATTTTTTTTTTTTTTTKWADTTHW TAGTTTYAKCTTT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Original Motif Reverse Complement TAKTTTTWKYTTTTTTTKWADTTHW TGTGTGWGTGTGTGTGTG TRTKTKTDTSTKTKTDTKWADTTHW Direction: Forward Position #: 1 Overlap #: 18 Alignment: TAKTTTTWKYTTTTTTTKWADTTHW TGTGTGWGTGTGTGTGTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 25 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 25 Motif 7 Original Motif Reverse Complement AATAACAGATT AATAGYATTTT AATARCAKWTT Direction: Backward Position #: 1 Overlap #: 11 Alignment: AATAACAGATT AATAGYATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 45 Reverse Complement Original Motif AAWYTGKTATT TAASTCTWTTTTAA WAABTSTTWTTTAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAWYTGKTATT--- TAASTCTWTTTTAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Original Motif Reverse Complement WAABTSTTWTTTAA ATTTTTTTTTTTTT AWWTTTTTTTTTWW Direction: Forward Position #: 1 Overlap #: 14 Alignment: WAABTSTTWTTTAA ATTTTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Combined Motif Reverse Complement Reverse Complement WWAAAAAAAAAWWT AAATAKATWTT WWAAAWADAWATTT Direction: Forward Position #: 3 Overlap #: 11 Alignment: WWAAAAAAAAAWWT --AAATAKATWTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Combined Motif Reverse Complement Original Motif AAATWTDTWTTTWW ATTCTGTRAAG AAATWTDTATTYTDTRAAG Direction: Forward Position #: 9 Overlap #: 6 Alignment: AAATWTDTWTTTWW----- --------ATTCTGTRAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Original Motif Original Motif AAATWTDTATTYTDTRAAG TTTAATGTYTTTWA WWWAATGTHTTTWATRAAG Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAATWTDTATTYTDTRAAG TTTAATGTYTTTWA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Original Motif Original Motif WWWAATGTHTTTWATRAAG AAAMATTGTTT AAAAATKKTTTTWATRAAG Direction: Forward Position #: 1 Overlap #: 11 Alignment: WWWAATGTHTTTWATRAAG AAAMATTGTTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 26 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Motif 23 Original Motif Original Motif CTGTTTTWAT ATGTWTTCATTMAT TMATMTGTTTTHAT Direction: Backward Position #: 5 Overlap #: 10 Alignment: CTGTTTTWAT---- ATGTWTTCATTMAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Original Motif TMATMTGTTTTHAT TTTTTTTKTTKTTTAATTHW TTTHWTHTKTTTTTAWTTHW Direction: Forward Position #: 3 Overlap #: 14 Alignment: --TMATMTGTTTTHAT---- TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Original Motif Reverse Complement TTTHWTHTKTTTTTAWTTHW ATTTTTTTTTTTTT TTTHATTTTTTTTTWTTTHW Direction: Forward Position #: 5 Overlap #: 14 Alignment: TTTHWTHTKTTTTTAWTTHW ----ATTTTTTTTTTTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Original Motif TTTHATTTTTTTTTWTTTHW TCTKTGTCAAWA THWTYTKTKTYWAWWTTTHA Direction: Backward Position #: 4 Overlap #: 12 Alignment: TTTHATTTTTTTTTWTTTHW -----TCTKTGTCAAWA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Reverse Complement Reverse Complement THAAAWWTWKAYARAKAWHA TWAAAKACATTAAA TWAAAKAYATWMAAAKAWHA Direction: Forward Position #: 1 Overlap #: 14 Alignment: THAAAWWTWKAYARAKAWHA TWAAAKACATTAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Original Motif Original Motif TWAAAKAYATWMAAAKAWHA HAAAAHAAARMAAA TAAAADAMADHAAAAKAWHA Direction: Forward Position #: 1 Overlap #: 14 Alignment: TWAAAKAYATWMAAAKAWHA HAAAAHAAARMAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif TDWTYTTTTHDTYTDTTTTA KTTTTTTKTTTTTTDAAB TDWTYTTTTTTTTTTTTTWAAB Direction: Forward Position #: 5 Overlap #: 16 Alignment: TDWTYTTTTHDTYTDTTTTA-- ----KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Combined Motif Original Motif Reverse Complement TDWTYTTTTTTTTTTTTTWAAB TTYGGAAAGCAG TDWTYTTTTTTTTTTTKKAAAGCAG Direction: Forward Position #: 14 Overlap #: 9 Alignment: TDWTYTTTTTTTTTTTTTWAAB--- -------------TTYGGAAAGCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Original Motif Original Motif TDWTYTTTTTTTTTTTKKAAAGCAG TAASTCTWTTTTAA GCAGTWWBTYTTTTTWAATDWTYTT Direction: Backward Position #: 5 Overlap #: 14 Alignment: TDWTYTTTTTTTTTTTKKAAAGCAG -------TAASTCTWTTTTAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 25 Combined Motif Reverse Complement Original Motif AAMAWHATTWAAAAAKABWWACTGC AATAACAGATT AAMAWHATTWAAAAAKAATAACWGMTT Direction: Forward Position #: 17 Overlap #: 9 Alignment: AAMAWHATTWAAAAAKABWWACTGC-- ----------------AATAACAGATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 27 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 27 Motif 25 Original Motif Reverse Complement ATTCTGTRAAG AATCTGTTATT AWTCTGTDAWK Direction: Backward Position #: 1 Overlap #: 11 Alignment: ATTCTGTRAAG AATCTGTTATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Reverse Complement YWTDACAGAWT BTTHAAAAAAYAAAAAAR YTTHAMARAATAAAAAAR Direction: Forward Position #: 1 Overlap #: 11 Alignment: YWTDACAGAWT------- BTTHAAAAAAYAAAAAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Reverse Complement YTTHAMARAATAAAAAAR TWTTGACAYAGA THTTGACABARWAAAAAAR Direction: Forward Position #: 2 Overlap #: 11 Alignment: -YTTHAMARAATAAAAAAR TWTTGACAYAGA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ctatacggacg Combined Motif Reverse Complement Original Motif KTTTTTTWMTBTGTCAAHA CTATACGGACG KTTTTTTWMTBTGTCWATACGGACG Direction: Forward Position #: 15 Overlap #: 5 Alignment: KTTTTTTWMTBTGTCAAHA------ --------------CTATACGGACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Original Motif KTTTTTTWMTBTGTCWATACGGACG TTTTTTTKTTKTTTAATTHW TTTTTTTTTYTTTKWMWWHACGGACG Direction: Forward Position #: 2 Overlap #: 19 Alignment: -KTTTTTTWMTBTGTCWATACGGACG TTTTTTTKTTKTTTAATTHW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 28 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 28 Motif 27 Original Motif Original Motif ATTTAGTAAA ATTCTGTRAAG ATTYWGTAAAG Direction: Forward Position #: 1 Overlap #: 10 Alignment: ATTTAGTAAA- ATTCTGTRAAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 46 Combined Motif Original Motif Reverse Complement ATTYWGTAAAG TATKCTAAACCTAT ATWTDSTAAASCTAT Direction: Forward Position #: 2 Overlap #: 10 Alignment: ATTYWGTAAAG---- -TATKCTAAACCTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Reverse Complement Reverse Complement ATAGSTTTASDAWAT TWAAAKACATTAAA ATAGSTTTAVAADAYATTAAA Direction: Forward Position #: 8 Overlap #: 8 Alignment: ATAGSTTTASDAWAT------ -------TWAAAKACATTAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Original Motif TTTAATKTDTTBTAAASCTAT KTTTTTTKTTTTTTDAAB TTTWWTTTTTTTTWAAVCTAT Direction: Forward Position #: 1 Overlap #: 18 Alignment: TTTAATKTDTTBTAAASCTAT KTTTTTTKTTTTTTDAAB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Reverse Complement Reverse Complement ATAGBTTWAAAAAAAAWWAAA ATYAATGAAWACAT TAWHAATRAAWAMAATAGBTTW Direction: Backward Position #: 2 Overlap #: 13 Alignment: ATAGBTTWAAAAAAAAWWAAA- --------ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 29 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 29 Motif 49 Original Motif Reverse Complement ATTTATTGCTA ATTTTTTTTTTTTT ATTTWTTKYTWTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: ATTTATTGCTA--- ATTTTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Reverse Complement Reverse Complement AAAWAKYAAWAAAT TTATATYATTA WWATATYAWTAAAT Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAWAKYAAWAAAT TTATATYATTA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Original Motif Reverse Complement WWATATYAWTAAAT ATYAATGAAWACAT ATHWATBAAWAMAT Direction: Forward Position #: 1 Overlap #: 14 Alignment: WWATATYAWTAAAT ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Original Motif Reverse Complement ATHWATBAAWAMAT AAACAATYTTT AAWCAATBWWTAMAT Direction: Forward Position #: 2 Overlap #: 10 Alignment: -ATHWATBAAWAMAT AAACAATYTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Reverse Complement ATYTAWWBATTGWTT TAGTTTYAKCTTT TAKTTWHAKMTTKWTT Direction: Forward Position #: 2 Overlap #: 12 Alignment: -ATYTAWWBATTGWTT TAGTTTYAKCTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Reverse Complement Original Motif AAWRAARYTHWAAYTA AACATATTTTCA AAMAWADTTTMAAYTA Direction: Forward Position #: 1 Overlap #: 12 Alignment: AAWRAARYTHWAAYTA AACATATTTTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Original Motif TAKTTRAAADTWTRTT TTTTTTTKTTKTTTAATTHW TTWKTTKWWWDTTTRWTTHW Direction: Forward Position #: 2 Overlap #: 16 Alignment: -TAKTTRAAADTWTRTT--- TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Original Motif Original Motif TTWKTTKWWWDTTTRWTTHW KTTTTTTKTTTTTTDAAB TTTTTTTDTTTTTTDAWKHW Direction: Forward Position #: 1 Overlap #: 18 Alignment: TTWKTTKWWWDTTTRWTTHW KTTTTTTKTTTTTTDAAB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Original Motif Original Motif TTTTTTTDTTTTTTDAWKHW TTTAATGTYTTTWA TTTWWTKTTTTTWWDAWKHW Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTTTTTTDTTTTTTDAWKHW TTTAATGTYTTTWA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Reverse Complement TTTWWTKTTTTTWWDAWKHW TTYAAACATYTT TTTAAWSWTTTTWWDAWKHW Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTTWWTKTTTTTWWDAWKHW TTYAAACATYTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 30 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 30 Motif 31 Original Motif Original Motif TTGCTGCTTTT TTGTTGATTTT TTGYTGMTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTGCTGCTTTT TTGTTGATTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Original Motif Original Motif TTGYTGMTTTT TTTAATGTYTTTWA TTKHWKVTTTTTWA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTGYTGMTTTT--- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Reverse Complement TTKHWKVTTTTTWA TTTRKTTTHTTTTH TTTTTGBTTTTTTWTH Direction: Forward Position #: 3 Overlap #: 12 Alignment: TTKHWKVTTTTTWA-- --TTTRKTTTHTTTTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 24 Original Motif Reverse Complement TTTTTGBTTTTTTWTH TTWATGWCTTT TTTATGDYTTTTTWTH Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTTTTGBTTTTTTWTH TTWATGWCTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Reverse Complement Original Motif HAWAAAAAKDCATAAA AAAAAAAAAAAAAT HAWAAAAADAMAAAAAT Direction: Forward Position #: 4 Overlap #: 13 Alignment: HAWAAAAAKDCATAAA- ---AAAAAAAAAAAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Original Motif ATTTTTYTDTTTTTWTH KTTTTTTKTTTTTTDAAB WTTTTTTKTTTTTTWWAB Direction: Forward Position #: 1 Overlap #: 17 Alignment: ATTTTTYTDTTTTTWTH- KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif WTTTTTTKTTTTTTWWAB TTTTTTTKTTKTTTAATTHW WTTTTTTTTTTTTTTTWDATTHW Direction: Forward Position #: 4 Overlap #: 15 Alignment: WTTTTTTKTTTTTTWWAB----- ---TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement WTTTTTTTTTTTTTTTWDATTHW HVCDBBDBCAGCAG WTTTTTTTTTTTTBDHWBHDKCAGCAG Direction: Forward Position #: 14 Overlap #: 10 Alignment: WTTTTTTTTTTTTTTTWDATTHW---- -------------HVCDBBDBCAGCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Original Motif Reverse Complement WTTTTTTTTTTTTBDHWBHDKCAGCAG AATCTGTTATT AATYTKTTWTTTTTBDHWBHDKCAGCAG Direction: Forward Position #: 2 Overlap #: 10 Alignment: -WTTTTTTTTTTTTBDHWBHDKCAGCAG AATCTGTTATT----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Original Motif AATYTKTTWTTTTTBDHWBHDKCAGCAG AAMATGTTTMAA AAAATGTTTHAWTTTTBDHWBHDKCAGCAG Direction: Forward Position #: 3 Overlap #: 10 Alignment: --AATYTKTTWTTTTTBDHWBHDKCAGCAG AAMATGTTTMAA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 31 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 31 Motif 30 Original Motif Original Motif TTGTTGATTTT TTGCTGCTTTT TTGYTGMTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTGTTGATTTT TTGCTGCTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Reverse Complement Original Motif AAAAYCAKCAA AAAAAAAAAAAAAT AAAAHMADMAAAAAT Direction: Forward Position #: 2 Overlap #: 10 Alignment: AAAAYCAKCAA---- -AAAAAAAAAAAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif ATTTTTYDTYHTTTT TTTTTTTKTTKTTTAATTHW ATTTTTTTTBTTTTTTAATTHW Direction: Forward Position #: 3 Overlap #: 13 Alignment: ATTTTTYDTYHTTTT------- --TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Reverse Complement Reverse Complement WHAATTAAAAAAVAAAAAAAAT TWAAAKACATTAAA TWAAWKAMAWWAAAAAAAAAAT Direction: Forward Position #: 1 Overlap #: 14 Alignment: WHAATTAAAAAAVAAAAAAAAT TWAAAKACATTAAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 24 Combined Motif Reverse Complement Reverse Complement ATTTTTTTTTTWWTRTRWTTWA TTWATGWCTTT ATTTTTWTKTYTTTRTRWTTWA Direction: Forward Position #: 4 Overlap #: 11 Alignment: ATTTTTTTTTTWWTRTRWTTWA ---TTWATGWCTTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Original Motif Original Motif ATTTTTWTKTYTTTRTRWTTWA KTTTTTTKTTTTTTDAAB WTTTTTTTTTTTTTRWADTTWA Direction: Forward Position #: 1 Overlap #: 18 Alignment: ATTTTTWTKTYTTTRTRWTTWA KTTTTTTKTTTTTTDAAB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Reverse Complement Original Motif TWAADTWMAAAAAAAAAAAAAW HAAAAHAAARMAAA TWAAHWAAAAAAARMAAAAAAW Direction: Forward Position #: 5 Overlap #: 14 Alignment: TWAADTWMAAAAAAAAAAAAAW ----HAAAAHAAARMAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Combined Motif Original Motif Reverse Complement TWAAHWAAAAAAARMAAAAAAW AAATAKATWTT TWAAHWAAAAAAAAAAWADAWWTT Direction: Forward Position #: 14 Overlap #: 9 Alignment: TWAAHWAAAAAAARMAAAAAAW-- -------------AAATAKATWTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Original Motif Reverse Complement TWAAHWAAAAAAAAAAWADAWWTT ATYAATGAAWACAT ATYAATGAAAAMAWAAAWADAWWTT Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TWAAHWAAAAAAAAAAWADAWWTT ATYAATGAAWACAT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Reverse Complement Original Motif AAWWTDTWTTTWTRTTTTCATTMAT AAMATGTTTMAA AAMATGTTTHWATRTTTTCATTMAT Direction: Forward Position #: 1 Overlap #: 12 Alignment: AAWWTDTWTTTWTRTTTTCATTMAT AAMATGTTTMAA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 32 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 32 Motif 33 Original Motif Original Motif TTACWGTTT TTTAATGTYTTTWA TTWATTAMTGTTTT Direction: Backward Position #: 5 Overlap #: 9 Alignment: -TTACWGTTT---- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Reverse Complement Reverse Complement AAAACAYTAATWAA AATCTGTTATT AAWMYRTTAWTWAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAACAYTAATWAA AATCTGTTATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 30 Reverse Complement Original Motif TTWAWTAAMKYWTT TTGCTGCTTTT TWTKMWVBTTTTTWA Direction: Backward Position #: 2 Overlap #: 10 Alignment: TTWAWTAAMKYWTT- ----TTGCTGCTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 33 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Motif 4 Reverse Complement Original Motif TWAAAKACATTAAA HAAAAHAAARMAAA TWAAADAMADYAAA Direction: Backward Position #: 1 Overlap #: 14 Alignment: TWAAAKACATTAAA HAAAAHAAARMAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Original Motif TTTMDTRTDTTTWA TTTTTTTKTTKTTTAATTHW TTTTTTTDTTTTTTAATTHW Direction: Forward Position #: 2 Overlap #: 14 Alignment: -TTTMDTRTDTTTWA----- TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TTTTTTTDTTTTTTAATTHW KTTTTTTKTTTTTTDAAB TTTTTTTKTTTTTTDAWKHW Direction: Forward Position #: 1 Overlap #: 18 Alignment: TTTTTTTDTTTTTTAATTHW KTTTTTTKTTTTTTDAAB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Original Motif Reverse Complement TTTTTTTKTTTTTTDAWKHW ATTTTTTTTTTTTT TWTTTTTTTTTTTTTAWKHW Direction: Forward Position #: 2 Overlap #: 14 Alignment: TTTTTTTKTTTTTTDAWKHW -ATTTTTTTTTTTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Reverse Complement Reverse Complement WHRWTAAAAAAAAAAAAAWA ATYAATGAAWACAT ATYAATRAAAAMAWAAAAAWA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -WHRWTAAAAAAAAAAAAAWA ATYAATGAAWACAT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Original Motif Reverse Complement ATYAATRAAAAMAWAAAAAWA TTAAAAWAGASTTA ATTAAWAAARASWTAAAAAWA Direction: Forward Position #: 2 Overlap #: 14 Alignment: ATYAATRAAAAMAWAAAAAWA -TTAAAAWAGASTTA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 22 Reverse Complement Original Motif TWTTTTTAWSTMTTTWTTAAT TTTATGGTGAGCAT GTGAGCATWTKWTKTWTTTTTAWSTMTTT Direction: Backward Position #: 9 Overlap #: 6 Alignment: TWTTTTTAWSTMTTTWTTAAT-------- ---------------TTTATGGTGAGCAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 34 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 34 Motif 15 Reverse Complement Reverse Complement TCATCTTT TAGTTTYAKCTTT TCATCTTTTAGTT Direction: Backward Position #: 1 Overlap #: 8 Alignment: -----TCATCTTT TAGTTTYAKCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Original Motif TCATCTTTTAGTT AACATATTTTCA AWCATMTTTTMRTT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -TCATCTTTTAGTT AACATATTTTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif taaacgatgcc Original Motif Reverse Complement AWCATMTTTTMRTT GGCATCGTTTA RDCATCKTTTARTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: AWCATMTTTTMRTT GGCATCGTTTA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif AAKTAAAYGATGHK AAAGGTCAAAGGTCAAC AAAGGTCAAARGTMAAYGATGHK Direction: Forward Position #: 10 Overlap #: 8 Alignment: ---------AAKTAAAYGATGHK AAAGGTCAAAGGTCAAC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Reverse Complement AAAGGTCAAARGTMAAYGATGHK AKGYYCAAAGRTCA AARGGTCAAAGGTCAAYGATGHK Direction: Forward Position #: 2 Overlap #: 14 Alignment: AAAGGTCAAARGTMAAYGATGHK -AKGYYCAAAGRTCA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 35 Original Motif Original Motif AARGGTCAAAGGTCAAYGATGHK AGATGYTCTTG CTTGWSAWGBWAARGGTCAAAGGTCAA Direction: Backward Position #: 5 Overlap #: 7 Alignment: AARGGTCAAAGGTCAAYGATGHK---- ----------------AGATGYTCTTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Reverse Complement Reverse Complement TTGACCTTTGACCKTTWBCWTSWCAAG TWAAAKACATTAAA ACATTAAATTWAABTTGACCTTTGACCKTTWBCWT Direction: Backward Position #: 9 Overlap #: 6 Alignment: TTGACCTTTGACCKTTWBCWTSWCAAG-------- ---------------------TWAAAKACATTAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 35 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 35 Motif 33 Original Motif Original Motif AGATGYTCTTG TTTAATGTYTTTWA AWRATGTTYTTDTT Direction: Backward Position #: 2 Overlap #: 11 Alignment: --AGATGYTCTTG- TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 36 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 36 AmTGTGACACCACAGT Original Motif Reverse Complement TGGTGTCA ACTGTGGTGTCACART CARTTGGTGTCAACTG Direction: Backward Position #: 5 Overlap #: 8 Alignment: ----TGGTGTCA---- ACTGTGGTGTCACART ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Reverse Complement CAGTTGACACCAAMTG ACTGTGACACCACAGTGGAGCACT MMKKTGACACCAMAKKGGAGCACT Direction: Forward Position #: 1 Overlap #: 16 Alignment: CAGTTGACACCAAMTG-------- ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Original Motif MMKKTGACACCAMAKKGGAGCACT TGTGGTGTCACAGTGCTCC MMTKTGRYRYCACAGTGSWSCACT Direction: Forward Position #: 3 Overlap #: 19 Alignment: MMKKTGACACCAMAKKGGAGCACT --TGTGGTGTCACAGTGCTCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement MMTKTGRYRYCACAGTGSWSCACT CCACTGTGVTGTCACAGTGCTCCA CCAMTGTGRTGTCACAGTGCTSCACT Direction: Forward Position #: 3 Overlap #: 22 Alignment: --MMTKTGRYRYCACAGTGSWSCACT CCACTGTGVTGTCACAGTGCTCCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Original Motif CCAMTGTGRTGTCACAGTGCTSCACT CACTGTGRTRTCACAGTGSWSCACT CCACTGTGRTRTCACAGTGCWSCACT Direction: Forward Position #: 2 Overlap #: 25 Alignment: CCAMTGTGRTGTCACAGTGCTSCACT -CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Reverse Complement Original Motif AGTGSWGCACTGTGAMAMCACAGTGG AAAGRTMAAACTA AGTGSWGCACTGTGAMAMCACARWGRTMAAACTA Direction: Forward Position #: 22 Overlap #: 5 Alignment: AGTGSWGCACTGTGAMAMCACAGTGG-------- ---------------------AAAGRTMAAACTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Original Motif AGTGSWGCACTGTGAMAMCACARWGRTMAAACTA TCTKTGTCAAWA AGTGSWGCWCTGTGWCAAHACARWGRTMAAACTA Direction: Forward Position #: 9 Overlap #: 12 Alignment: AGTGSWGCACTGTGAMAMCACARWGRTMAAACTA --------TCTKTGTCAAWA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Original Motif Reverse Complement AGTGSWGCWCTGTGWCAAHACARWGRTMAAACTA ATYAATGAAWACAT WACATMWHARKKAAAGTGSWGCWCTGTGWCAAHACARWG Direction: Backward Position #: 6 Overlap #: 9 Alignment: AGTGSWGCWCTGTGWCAAHACARWGRTMAAACTA----- -------------------------ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 37 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 37 atactttggc Original Motif Original Motif ACTTTGG ATACTTTGGC ATACTTTGGC Direction: Forward Position #: 3 Overlap #: 7 Alignment: --ACTTTGG- ATACTTTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwCCAmAGTCmt Reverse Complement Original Motif GCCAAAGTAT DDCCAMAGTCHB DGCCAAAGTMTB Direction: Forward Position #: 2 Overlap #: 10 Alignment: -GCCAAAGTAT- DDCCAMAGTCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif DGCCAAAGTMTB AGTGCTCCACTGTGGTGTCACAGT AGTGHTCCAMWGTVBTGTCACAGT Direction: Forward Position #: 5 Overlap #: 12 Alignment: ----DGCCAAAGTMTB-------- AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Reverse Complement Original Motif ACTGTGACAVVACWRTGGADCACT AMTGTGACACCACAGT ACTGTGACAVCACAGTGGADCACT Direction: Forward Position #: 1 Overlap #: 16 Alignment: ACTGTGACAVVACWRTGGADCACT AMTGTGACACCACAGT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Reverse Complement AGTGHTCCACTGTGVTGTCACAGT AGTGCTCCACTGTGDTG AGTGCTCCACTGTGVTGTCACAGT Direction: Forward Position #: 1 Overlap #: 17 Alignment: AGTGHTCCACTGTGVTGTCACAGT AGTGCTCCACTGTGDTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif AGTGCTCCACTGTGVTGTCACAGT CAGTGCTCCACTGTGBT CAGTGCTCCACTGTGBTGTCACAGT Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AGTGCTCCACTGTGVTGTCACAGT CAGTGCTCCACTGTGBT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Reverse Complement CAGTGCTCCACTGTGBTGTCACAGT AKGYYCAAAGRTCA CAGTGCTCCACTGTRDKBTCAMAGDTCA Direction: Forward Position #: 15 Overlap #: 11 Alignment: CAGTGCTCCACTGTGBTGTCACAGT--- --------------AKGYYCAAAGRTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement TGADCTRTGABRHMACAGTGGAGCACTG AGTGSWSCACTGTGAMAMCACAGTG AGTGSTGMACTGTGACAHCACAGTGGAGCACTG Direction: Forward Position #: 6 Overlap #: 20 Alignment: -----TGADCTRTGABRHMACAGTGGAGCACTG AGTGSWSCACTGTGAMAMCACAGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif CAGTGCTCCACTGTGDTGTCACAGTYCASCACT TGGAGCACTGTGACAVCACAGTGG TGGAGCASTGYKMCACYRYRGTGKCACAGTYCASCACT Direction: Forward Position #: 6 Overlap #: 19 Alignment: -----CAGTGCTCCACTGTGDTGTCACAGTYCASCACT TGGAGCACTGTGACAVCACAGTGG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Reverse Complement Reverse Complement AGTGSTGMACTGTGYCACKMKMGTGYYMCASTGCTCCA GTTGACCTTTGACCTTT AGTGBTGAMCTKTGACMYTHKMGTGYYMCASTGCTCCA Direction: Forward Position #: 4 Overlap #: 17 Alignment: AGTGSTGMACTGTGYCACKMKMGTGYYMCASTGCTCCA ---GTTGACCTTTGACCTTT------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 38 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 38 Motif 33 Reverse Complement Reverse Complement CAAAKTYAT TWAAAKACATTAAA THAAAKWCATTAAA Direction: Forward Position #: 2 Overlap #: 9 Alignment: -CAAAKTYAT---- TWAAAKACATTAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 35 Combined Motif Original Motif Reverse Complement THAAAKWCATTAAA CAAGAKCATCT TCAARDDCATYWAA Direction: Forward Position #: 2 Overlap #: 11 Alignment: THAAAKWCATTAAA -CAAGAKCATCT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Reverse Complement Reverse Complement TTWKATGDDKTTGA ATTTTTTTTTTTTT ATTTTWTKTTTTTKA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TTWKATGDDKTTGA ATTTTTTTTTTTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Reverse Complement Original Motif TRAAAAARAWAAAAT TGAAAATSCTT TGAAAATVMTWAAAT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TRAAAAARAWAAAAT TGAAAATSCTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 18 Original Motif Original Motif TGAAAATVMTWAAAT CAAAGTCCAGC CCAGCMAAAVTTGAAAATVM Direction: Backward Position #: 6 Overlap #: 6 Alignment: TGAAAATVMTWAAAT----- ---------CAAAGTCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwCCAmAGTCmt Combined Motif Original Motif Original Motif CCAGCMAAAVTTGAAAATVM DDCCAMAGTCHB CCAGCCAMAGTYVAAAATVM Direction: Forward Position #: 3 Overlap #: 12 Alignment: CCAGCMAAAVTTGAAAATVM --DDCCAMAGTCHB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- atactttggc Combined Motif Original Motif Reverse Complement CCAGCCAMAGTYVAAAATVM GCCAAAGTAT CCAGCCAAAGTWTAAAATVM Direction: Forward Position #: 4 Overlap #: 10 Alignment: CCAGCCAMAGTYVAAAATVM ---GCCAAAGTAT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Reverse Complement Original Motif YVATTTTAWACTTTGGCTGG TAATKATATAA TAATTWTATAMTTTGGCTGG Direction: Forward Position #: 1 Overlap #: 11 Alignment: YVATTTTAWACTTTGGCTGG TAATKATATAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Original Motif Original Motif TAATTWTATAMTTTGGCTGG AAAATKCTATT AWAATKHTATWMTTTGGCTGG Direction: Forward Position #: 2 Overlap #: 10 Alignment: -TAATTWTATAMTTTGGCTGG AAAATKCTATT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 13 Original Motif Reverse Complement AWAATKHTATWMTTTGGCTGG AAATAKATWTT AAAWWKATATTMTTTGGCTGG Direction: Forward Position #: 1 Overlap #: 11 Alignment: AWAATKHTATWMTTTGGCTGG AAATAKATWTT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 39 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 39 TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement GCTGTGAC GGAGCACTGTGACACCACA GGAGCRCTGTGACACCACA Direction: Forward Position #: 6 Overlap #: 8 Alignment: -----GCTGTGAC------ GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Reverse Complement GGAGCRCTGTGACACCACA ACTGTGGTGTCACART RSWGYGSTGTSACAVYACA Direction: Forward Position #: 1 Overlap #: 16 Alignment: GGAGCRCTGTGACACCACA ACTGTGGTGTCACART--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement RSWGYGSTGTSACAVYACA ACTGTGACACCACAGTGGAGCACT ASTGTGAYRYCACAGTRSAGCACT Direction: Forward Position #: 1 Overlap #: 19 Alignment: RSWGYGSTGTSACAVYACA----- ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif ASTGTGAYRYCACAGTRSAGCACT TGGAGCACTGTGACAVCACAGTGG TRSWGYRMTGTSACAVYACAGYRST Direction: Forward Position #: 2 Overlap #: 23 Alignment: -ASTGTGAYRYCACAGTRSAGCACT TGGAGCACTGTGACAVCACAGTGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Reverse Complement Original Motif ASKMCTGTKVTGTSACARKKCWSMA AAAGGTCAAAGGTCAAC AWDVKGTCAMAGGTCAVCASKMCTG Direction: Backward Position #: 2 Overlap #: 17 Alignment: ASKMCTGTKVTGTSACARKKCWSMA -------AAAGGTCAAAGGTCAAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 40 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 40 Motif 18 Original Motif Original Motif AAGTTCA CAAAGTCCAGC GCAAGTYCACA Direction: Backward Position #: 3 Overlap #: 7 Alignment: --AAGTTCA-- CAAAGTCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Original Motif Original Motif GCAAGTYCACA AAAGGTCAAAGGTCAAC GMAAGKTCAMAGGTCAAC Direction: Forward Position #: 2 Overlap #: 10 Alignment: GCAAGTYCACA------- -AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Original Motif Reverse Complement GMAAGKTCAMAGGTCAAC AKGYYCAAAGRTCA GMAAGKTCAAAGGTCAAC Direction: Forward Position #: 3 Overlap #: 14 Alignment: GMAAGKTCAMAGGTCAAC --AKGYYCAAAGRTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb Combined Motif Reverse Complement Reverse Complement GTTGACCTTTGARCTTRC TGACCTTGMBBB GTTGACCTTKRVVCTTRC Direction: Forward Position #: 3 Overlap #: 12 Alignment: GTTGACCTTTGARCTTRC --TGACCTTGMBBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Reverse Complement Original Motif GMAAGBBMRAAGGTCAAC AAAGRTMAAACTA GMAAGBBMAAAGGTCAAMCTA Direction: Forward Position #: 9 Overlap #: 10 Alignment: GMAAGBBMRAAGGTCAAC--- --------AAAGRTMAAACTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 35 Combined Motif Original Motif Reverse Complement GMAAGBBMAAAGGTCAAMCTA CAAGAKCATCT TAMAAGRTCAWCYGMAAGBBM Direction: Backward Position #: 3 Overlap #: 11 Alignment: GMAAGBBMAAAGGTCAAMCTA --------CAAGAKCATCT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 41 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 41 Motif 28 Reverse Complement Reverse Complement TTTCCTCCA TTTACTAAAT TTTMCTMMAT Direction: Forward Position #: 1 Overlap #: 9 Alignment: TTTCCTCCA- TTTACTAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Reverse Complement Reverse Complement ATYYAGYAAA ATYAATGAAWACAT ATYHAKBAAAACAT Direction: Forward Position #: 1 Overlap #: 10 Alignment: ATYYAGYAAA---- ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Reverse Complement Original Motif ATGTTTTBYTHKAT CAGTGCTCCACTGTGBT CAGTGCTCCAMTGTKTTBYTHKAT Direction: Forward Position #: 11 Overlap #: 7 Alignment: ----------ATGTTTTBYTHKAT CAGTGCTCCACTGTGBT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Reverse Complement ATYHAKBAAYACAYTGGAGCACTG ACTGTGACACCACAGTGGAGCACT AMTBTRDCAVCACABTGGAGCACTG Direction: Forward Position #: 2 Overlap #: 23 Alignment: -ATYHAKBAAYACAYTGGAGCACTG ACTGTGACACCACAGTGGAGCACT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Reverse Complement Reverse Complement CAGTGCTCCABTGTGVTGDKABAYT AGTGCTCCACTGTGDTG CAGTGCTCCACTGTGVTGDKABAYT Direction: Forward Position #: 2 Overlap #: 17 Alignment: CAGTGCTCCABTGTGVTGDKABAYT -AGTGCTCCACTGTGDTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement AMTBTRDCAVCACAGTGGAGCACTG CCACTGTGVTGTCACAGTGCTCCA CCAMTGTGDYRTCACAGTGSWSCACTG Direction: Forward Position #: 3 Overlap #: 22 Alignment: --AMTBTRDCAVCACAGTGGAGCACTG CCACTGTGVTGTCACAGTGCTCCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Reverse Complement Original Motif CAGTGSWSCACTGTGAKMHCACARTGG AAAGRTMAAACTA CAGTGSWSCACTGTGAKMHCACAAWGRTMAAACTA Direction: Forward Position #: 23 Overlap #: 5 Alignment: CAGTGSWSCACTGTGAKMHCACARTGG-------- ----------------------AAAGRTMAAACTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 42 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 42 Motif 23 Original Motif Reverse Complement TGAATGAA ATYAATGAAWACAT ATYAATGAATRMAT Direction: Forward Position #: 6 Overlap #: 8 Alignment: -----TGAATGAA- ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 44 Original Motif Original Motif ATYAATGAATRMAT AATGKAAGAA AATBDAWGAATRMAT Direction: Forward Position #: 2 Overlap #: 9 Alignment: -ATYAATGAATRMAT AATGKAAGAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 41 Combined Motif Original Motif Original Motif AATBDAWGAATRMAT TGGAGGAAA AATGGADGAAWRMAT Direction: Forward Position #: 3 Overlap #: 9 Alignment: AATBDAWGAATRMAT --TGGAGGAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Original Motif Reverse Complement AATGGADGAAWRMAT CTTKACAGAAT MWTGAMAGAATRMAT Direction: Forward Position #: 1 Overlap #: 11 Alignment: AATGGADGAAWRMAT CTTKACAGAAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Reverse Complement Original Motif ATYKATTCTYTCAWY TTTAATGTYTTTWA ATTTAWTSTYTTWWH Direction: Forward Position #: 2 Overlap #: 14 Alignment: ATYKATTCTYTCAWY -TTTAATGTYTTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Reverse Complement ATTTAWTSTYTTWWH TTYAAACATYTT WTYWAAYVTYTTWWH Direction: Forward Position #: 1 Overlap #: 12 Alignment: ATTTAWTSTYTTWWH TTYAAACATYTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- taaacgatgcc Combined Motif Reverse Complement Original Motif HWWAAKABKTTWMAW TAAACGATGCC HWWAAKABKTTAAAHGATGCC Direction: Forward Position #: 11 Overlap #: 5 Alignment: HWWAAKABKTTWMAW------ ----------TAAACGATGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 28 Combined Motif Original Motif Original Motif HWWAAKABKTTAAAHGATGCC ATTTAGTAAA HWWAATWTDKTAAAHGATGCC Direction: Forward Position #: 5 Overlap #: 10 Alignment: HWWAAKABKTTAAAHGATGCC ----ATTTAGTAAA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 31 Combined Motif Reverse Complement Original Motif GGCATCDTTTAYDAWATTWWH TTGTTGATTTT GGCATYGTTKATTWTATTWWH Direction: Forward Position #: 5 Overlap #: 11 Alignment: GGCATCDTTTAYDAWATTWWH ----TTGTTGATTTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 29 Combined Motif Reverse Complement Original Motif HWWAATAWAATYAACKATGCC ATTTATTGCTA HWWAATAWAATYAWYTATKSCTA Direction: Forward Position #: 13 Overlap #: 9 Alignment: HWWAATAWAATYAACKATGCC-- ------------ATTTATTGCTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 43 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 43 Motif 4 Reverse Complement Reverse Complement TGCCTTTCYTT TTTRKTTTHTTTTH THTKSCTTTCTTTT Direction: Backward Position #: 3 Overlap #: 11 Alignment: -TGCCTTTCYTT-- TTTRKTTTHTTTTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Original Motif Reverse Complement THTKSCTTTCTTTT ATTTTTTTTTTTTT WTTTBTTTTYTTTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: THTKSCTTTCTTTT ATTTTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Combined Motif Original Motif Original Motif WTTTBTTTTYTTTT CTGCTTTCCMAA WTTTBTYTKCTTTYCMAA Direction: Forward Position #: 7 Overlap #: 8 Alignment: WTTTBTTTTYTTTT---- ------CTGCTTTCCMAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif WTTTBTYTKCTTTYCMAA TTTTTTTKTTKTTTAATTHW WTTTTTTTTYTTTTYHWAATTHW Direction: Forward Position #: 4 Overlap #: 15 Alignment: WTTTBTYTKCTTTYCMAA----- ---TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Original Motif Original Motif WTTTTTTTTYTTTTYHWAATTHW TAASTCTWTTTTAA WTTTWWBTYTTTTTTAAAATTHW Direction: Forward Position #: 4 Overlap #: 14 Alignment: WTTTTTTTTYTTTTYHWAATTHW ---TAASTCTWTTTTAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Original Motif Original Motif WTTTWWBTYTTTTTTAAAATTHW TTTAATGTYTTTWA TTTWATGTYTTTTWTAAAATTHW Direction: Forward Position #: 1 Overlap #: 14 Alignment: WTTTWWBTYTTTTTTAAAATTHW TTTAATGTYTTTWA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Reverse Complement Reverse Complement WHAATTTTAWAAAAKACATWAAA AAGSATTTTCA AAGVATTTTMAAAAAKACATWAAA Direction: Forward Position #: 2 Overlap #: 10 Alignment: -WHAATTTTAWAAAAKACATWAAA AAGSATTTTCA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 24 Combined Motif Reverse Complement Reverse Complement TTTWATGTYTTTTTRAAAATVCTT TTWATGWCTTT TTTWATGTCTTTTTRAAAATVCTT Direction: Forward Position #: 2 Overlap #: 11 Alignment: TTTWATGTYTTTTTRAAAATVCTT -TTWATGWCTTT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Combined Motif Original Motif Original Motif TTTWATGTCTTTTTRAAAATVCTT ATGTWTTCATTMAT TTTWATGTHTTYWTKAAWATVCTT Direction: Forward Position #: 5 Overlap #: 14 Alignment: TTTWATGTCTTTTTRAAAATVCTT ----ATGTWTTCATTMAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb Combined Motif Original Motif Original Motif TTTWATGTHTTYWTKAAWATVCTT VBBYCAAGGTCA TTTWATGTHTTYWTKAAWATVBTYAAGGTCA Direction: Forward Position #: 20 Overlap #: 5 Alignment: TTTWATGTHTTYWTKAAWATVCTT------- -------------------VBBYCAAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 44 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 44 Motif 14 Reverse Complement Reverse Complement TTCTTYCATT TTATATYATTA TTMTWTCATTA Direction: Forward Position #: 1 Overlap #: 10 Alignment: TTCTTYCATT- TTATATYATTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Original Motif Original Motif TTMTWTCATTA ATGTWTTCATTMAT ATKHTTTCATTAAT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -TTMTWTCATTA-- ATGTWTTCATTMAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 45 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 TFM13 Reverse Complement Reverse Complement TTAAAAWAGASTTA WHAATTAAARAARAAAAAAA WHAATTAAAAAAGAVWWAAA Direction: Forward Position #: 5 Overlap #: 14 Alignment: ----TTAAAAWAGASTTA-- WHAATTAAARAARAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif TTTWWBTCTTTTTTAATTDW KTTTTTTKTTTTTTDAAB TTTWWTTYTTTTTTWWTTDAAB Direction: Forward Position #: 5 Overlap #: 16 Alignment: TTTWWBTCTTTTTTAATTDW-- ----KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Original Motif Original Motif TTTWWTTYTTTTTTWWTTDAAB TTTAATGTYTTTWA TTTTTTWATKTTTTTWWTDAAB Direction: Forward Position #: 4 Overlap #: 14 Alignment: TTTWWTTYTTTTTTWWTTDAAB ---TTTAATGTYTTTWA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Reverse Complement TTTTTTWATKTTTTTWWTDAAB TTTRKTTTHTTTTH TTTDTTTWTKTTTTTWWTDAAB Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTTTTTWATKTTTTTWWTDAAB TTTRKTTTHTTTTH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Original Motif Original Motif TTTDTTTWTKTTTTTWWTDAAB ATGTWTTCATTMAT ATKTWTTYATTHWTTTWWTDAAB Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TTTDTTTWTKTTTTTWWTDAAB ATGTWTTCATTMAT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Original Motif Reverse Complement ATKTWTTYATTHWTTTWWTDAAB ATTTTTTTTTTTTT ATKTATTTWTTTTTTTTTTDAAB Direction: Forward Position #: 5 Overlap #: 14 Alignment: ATKTWTTYATTHWTTTWWTDAAB ----ATTTTTTTTTTTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 46 Combined Motif Original Motif Reverse Complement ATKTATTTWTTTTTTTTTTDAAB TATKCTAAACCTAT ATKTATTTWTTTTTWTTYTAAACCTAT Direction: Forward Position #: 14 Overlap #: 10 Alignment: ATKTATTTWTTTTTTTTTTDAAB---- -------------TATKCTAAACCTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Original Motif ATKTATTTWTTTTTWTTYTAAACCTAT CACTGTGRTRTCACAGTGSWSCACT ATKTATTTWTTTTTWTTYTAAMMCTRTGRTRTCACAGTGSWSCACT Direction: Forward Position #: 22 Overlap #: 6 Alignment: ATKTATTTWTTTTTWTTYTAAACCTAT------------------- ---------------------CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Reverse Complement ATKTATTTWTTTTTWTTYTAAMMCTRTGRTRTCACAGTGSWSCACT TAGTTTYAKCTTT TAKTTWTWTYTTTTTWTTYTAAMMCTRTGRTRTCACAGTGSWSCACT Direction: Forward Position #: 2 Overlap #: 12 Alignment: -ATKTATTTWTTTTTWTTYTAAMMCTRTGRTRTCACAGTGSWSCACT TAGTTTYAKCTTT---------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Reverse Complement Original Motif AGTGSWSCACTGTGAMAMCAKAGYYTTAKAAWAAAAAKAWAWAAYTA AACATATTTTCA TTTTCAAASATAAGTGSWSCACTGTGAMAMCAKAGYYTTAKAAWAAAAAKAWA Direction: Backward Position #: 7 Overlap #: 6 Alignment: AGTGSWSCACTGTGAMAMCAKAGYYTTAKAAWAAAAAKAWAWAAYTA------ -----------------------------------------AACATATTTTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 46 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 46 Motif 22 Reverse Complement Reverse Complement TATKCTAAACCTAT ATGCTCACCATAAA TTRYTCWMMAYMWAA Direction: Backward Position #: 2 Overlap #: 13 Alignment: -TATKCTAAACCTAT -ATGCTCACCATAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Reverse Complement Reverse Complement TTWYKTYYWGAKKAA TAGTTTYAKCTTT TTABTTTYAGMTTWA Direction: Forward Position #: 2 Overlap #: 13 Alignment: TTWYKTYYWGAKKAA -TAGTTTYAKCTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 45 Reverse Complement Reverse Complement TWAARCTKAAABTAA TTAAAAWAGASTTA TTAAAMWDRAVTTAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: TWAARCTKAAABTAA TTAAAAWAGASTTA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Original Motif Reverse Complement TTAAAMWDRAVTTAA ATYAATGAAWACAT ATTAAWVAADACWTAA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TTAAAMWDRAVTTAA ATYAATGAAWACAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Reverse Complement Original Motif TTAWGTDTTVWTTAAT TTTAATGTYTTTWA TTWARTGTTTTTTAAT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTAWGTDTTVWTTAAT TTTAATGTYTTTWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Reverse Complement TTWARTGTTTTTTAAT TTYAAACATYTT TTTAAWSWTYTTTAAT Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTWARTGTTTTTTAAT TTYAAACATYTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- taaacgatgcc Combined Motif Original Motif Original Motif TTTAAWSWTYTTTAAT TAAACGATGCC TTTAAWSWTYTTWAAYGATGCC Direction: Forward Position #: 12 Overlap #: 5 Alignment: TTTAAWSWTYTTTAAT------ -----------TAAACGATGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 Combined Motif Reverse Complement Original Motif GGCATCKTTWAAMAWSWTTAAA ACAACACATTT GGCATCKTTWAAMAWSWTWCAACACATTT Direction: Forward Position #: 19 Overlap #: 4 Alignment: GGCATCKTTWAAMAWSWTTAAA------- ------------------ACAACACATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 18 Original Motif Original Motif GGCATCKTTWAAMAWSWTWCAACACATTT CAAAGTCCAGC CAGCMAAASWCGGCATCKTTWAAMAWSWTWCAA Direction: Backward Position #: 5 Overlap #: 7 Alignment: GGCATCKTTWAAMAWSWTWCAACACATTT---- ----------------------CAAAGTCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Reverse Complement Reverse Complement TTGWAWSWTYTTWAAYGATGCCGWSTTTRGCTG TGAAAATATGTT TKAAAATATGTTWAAYGATGCCGWSTTTRGCTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTGWAWSWTYTTWAAYGATGCCGWSTTTRGCTG TGAAAATATGTT--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 47 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 47 CTCF Original Motif Reverse Complement YGCCACCTDSTGGY BMSMGCCYMCTKSTGGMHM HMCGCCMCCTDSTGGHBMS Direction: Backward Position #: 3 Overlap #: 14 Alignment: ---YGCCACCTDSTGGY-- BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif HMCGCCMCCTDSTGGHBMS CAGTGCTCCACTGTGBT CHVYGCYCCMYTGTGGTBMS Direction: Forward Position #: 2 Overlap #: 16 Alignment: -HMCGCCMCCTDSTGGHBMS CAGTGCTCCACTGTGBT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Reverse Complement SYVACCACAKYGGKGCMVHG AGTGCTCCACTGTGDTG AGBBCWCCACWGTGGTGCMVHG Direction: Forward Position #: 3 Overlap #: 15 Alignment: --SYVACCACAKYGGKGCMVHG AGTGCTCCACTGTGDTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif AGBBCWCCACWGTGGTGCMVHG AGTGCTCCACTGTGGTGTCACAGT AGTGCTCCACTGTGGTGYCACRGT Direction: Forward Position #: 1 Overlap #: 22 Alignment: AGBBCWCCACWGTGGTGCMVHG-- AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Original Motif ACKGTGMCACCACAGTGGAGCACT RAGKGMAGVRRGSRCASAGV RARBKVWGMMRVCACAGWGGAGCACT Direction: Forward Position #: 3 Overlap #: 18 Alignment: --ACKGTGMCACCACAGTGGAGCACT RAGKGMAGVRRGSRCASAGV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement RARBKVWGMMRVCACAGWGGAGCACT GCAGAKGSAGGABDGHDG RARBKDHRVMRGSASDVDGGAGBACT Direction: Forward Position #: 6 Overlap #: 18 Alignment: RARBKVWGMMRVCACAGWGGAGCACT -----GCAGAKGSAGGABDGHDG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement RARBKDHRVMRGSASDVDGGAGBACT MGGTCAGGGTGACCTRDBHV MGGTCARBGKBRCCKGSVBVVDGGAGBACT Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----RARBKDHRVMRGSASDVDGGAGBACT MGGTCAGGGTGACCTRDBHV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Original Motif Original Motif MGGTCARBGKBRCCKGSVBVVDGGAGBACT VBBYCAAGGTCA VGGYCAAGGTCACCKGSVBVVDGGAGBACT Direction: Forward Position #: 1 Overlap #: 12 Alignment: MGGTCARBGKBRCCKGSVBVVDGGAGBACT VBBYCAAGGTCA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement AGTBCTCCDVBBBSCRGGTGACCTTGMCCB CCACTGTGVTGTCACAGTGCTCCA ACCACTGTGVTGKYRMMSTKSWCCAGTBCTC Direction: Backward Position #: 2 Overlap #: 23 Alignment: AGTBCTCCDVBBBSCRGGTGACCTTGMCCB- -------CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 48 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 48 Motif 1 Original Motif Reverse Complement GCARRGGSAGS GCAGAGGSAKG GCAGAGGSAGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: GCARRGGSAGS GCAGAGGSAKG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement GCAGAGGSAGS GCAGAKGSAGGABDGHDG GCAGAGGSAGGABDGHDG Direction: Forward Position #: 1 Overlap #: 11 Alignment: GCAGAGGSAGS------- GCAGAKGSAGGABDGHDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Original Motif GCAGAGGSAGGABDGHDG YDRCCASYAGRKGGCRSYV GCABVGSCASBAGRGGGBRSYV Direction: Forward Position #: 4 Overlap #: 15 Alignment: GCAGAGGSAGGABDGHDG---- ---YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement GCABVGSCASBAGRGGGBRSYV HVCDBBDBCAGCAG GCABVDSCABCAGSDGGBRSYV Direction: Forward Position #: 3 Overlap #: 14 Alignment: GCABVGSCASBAGRGGGBRSYV --HVCDBBDBCAGCAG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Reverse Complement BMSMBCCDSCTGBTGSHVBTGC VCTSTGKSCMKBCTRCYCTK BCBMDSBVVCTBCTGCHVBBGC Direction: Forward Position #: 1 Overlap #: 20 Alignment: BMSMBCCDSCTGBTGSHVBTGC VCTSTGKSCMKBCTRCYCTK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 Combined Motif Reverse Complement Reverse Complement GCVVVDGCAGBAGVVBSDRVGV CKGGDTBDMMCTGG GCVVCKGSDKBDVVCBGGRVGV Direction: Forward Position #: 5 Overlap #: 14 Alignment: GCVVVDGCAGBAGVVBSDRVGV ----CKGGDTBDMMCTGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement BCBMCCVGBVDBYDSCRGBBGC GGYGCTGTCCATGGTGCTGAA TGAAVBHVCTGTCCHHGGYDSBCBMC Direction: Backward Position #: 5 Overlap #: 17 Alignment: BCBMCCVGBVDBYDSCRGBBGC---- -----GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 49 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 TFM13 Reverse Complement Original Motif ATTTTTTTTTTTTT TTTTTTTKTTKTTTAATTHW WTTTTTTTTTTTTTAATTHW Direction: Forward Position #: 1 Overlap #: 14 Alignment: ATTTTTTTTTTTTT------ TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif WTTTTTTTTTTTTTAATTHW KTTTTTTKTTTTTTDAAB WTTTTTTTTTTTTTWWTTDAAB Direction: Forward Position #: 5 Overlap #: 16 Alignment: WTTTTTTTTTTTTTAATTHW-- ----KTTTTTTKTTTTTTDAAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Reverse Complement Original Motif BTTDAAWWAAAAAAAAAAAAAW HAAAAHAAARMAAA BTTDAAAAAAAAAAMAAAAAAW Direction: Forward Position #: 5 Overlap #: 14 Alignment: BTTDAAWWAAAAAAAAAAAAAW ----HAAAAHAAARMAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Reverse Complement Original Motif WTTTTTTYTTTTTTTTTTDAAB ATGTWTTCATTMAT ATKTTTTCWTTHWTTTTTDAAB Direction: Forward Position #: 1 Overlap #: 14 Alignment: WTTTTTTYTTTTTTTTTTDAAB ATGTWTTCATTMAT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 33 Original Motif Original Motif ATKTTTTCWTTHWTTTTTDAAB TTTAATGTYTTTWA TWTDWTKTYTTTWATTTTTDAAB Direction: Forward Position #: 2 Overlap #: 13 Alignment: -ATKTTTTCWTTHWTTTTTDAAB TTTAATGTYTTTWA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Original Motif Reverse Complement TWTDWTKTYTTTWATTTTTDAAB TAGTTTYAKCTTT TWTAGTTTYWTYTWTTTTTDAAB Direction: Forward Position #: 3 Overlap #: 13 Alignment: TWTDWTKTYTTTWATTTTTDAAB --TAGTTTYAKCTTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Reverse Complement Reverse Complement BTTDAAAAAWAKAWKAAACTAWA TTAAAAWAGASTTA BTTTTAAAAWAGABTWAACTAWA Direction: Forward Position #: 4 Overlap #: 14 Alignment: BTTDAAAAAWAKAWKAAACTAWA ---TTAAAAWAGASTTA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Reverse Complement Original Motif TWTAGTTWAVTCTWTTTTAAAAB AAMATGTTTMAA AAHATRTTTAAATCTWTTTTAAAAB Direction: Forward Position #: 3 Overlap #: 10 Alignment: --TWTAGTTWAVTCTWTTTTAAAAB AAMATGTTTMAA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif BTTTTAAAAWAGATTTAAAMATHTT AACATATTTTCA BTTTTAAMATAKWTTCAAAMATHTT Direction: Forward Position #: 6 Overlap #: 12 Alignment: BTTTTAAAAWAGATTTAAAMATHTT -----AACATATTTTCA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 31 Combined Motif Reverse Complement Original Motif AAHATRTTTGAAWRTATRTTAAAAB TTGTTGATTTT AAHATKGTTGAWTWTATRTTAAAAB Direction: Forward Position #: 5 Overlap #: 11 Alignment: AAHATRTTTGAAWRTATRTTAAAAB ----TTGTTGATTTT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 50 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 50 Motif 41 Original Motif Original Motif GGAAM TGGAGGAAA GGAAATGGA Direction: Backward Position #: 1 Overlap #: 5 Alignment: ----GGAAM TGGAGGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 21 Reverse Complement Original Motif TCCATTTCC CTGCTTTCCMAA YYSMTTTCCMAA Direction: Forward Position #: 1 Overlap #: 9 Alignment: TCCATTTCC--- CTGCTTTCCMAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 43 Original Motif Reverse Complement YYSMTTTCCMAA TGCCTTTCYTT TBCCTTTCCHWA Direction: Forward Position #: 1 Overlap #: 11 Alignment: YYSMTTTCCMAA TGCCTTTCYTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 44 Combined Motif Original Motif Reverse Complement TBCCTTTCCHWA TTCTTYCATT TTYCTTTCMTTA Direction: Forward Position #: 2 Overlap #: 10 Alignment: TBCCTTTCCHWA -TTCTTYCATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Reverse Complement TTYCTTTCMTTA TGAAAATATGTT TGAAAATWTSTTTCMTTA Direction: Forward Position #: 7 Overlap #: 6 Alignment: ------TTYCTTTCMTTA TGAAAATATGTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif TGAAAATWTSTTTCMTTA TGAAAATSCTT TGAAAATVYBTTTCMTTA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TGAAAATWTSTTTCMTTA TGAAAATSCTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 28 Reverse Complement Reverse Complement TAAYGAAAVKVATTTTCA TTTACTAAAT TTWACKAAATKVATTTTCA Direction: Forward Position #: 2 Overlap #: 9 Alignment: -TAAYGAAAVKVATTTTCA TTTACTAAAT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Original Motif TGAAAATVYATTTYGTWAA AGAGAAAG WGARAAWGYATTTYGTWAA Direction: Forward Position #: 1 Overlap #: 8 Alignment: TGAAAATVYATTTYGTWAA AGAGAAAG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif WGARAAWGYATTTYGTWAA TTCAGCACCATGGACAGCKCC TTCAGCACCATDGAVARHGCHTTTYGTWAA Direction: Forward Position #: 12 Overlap #: 10 Alignment: -----------WGARAAWGYATTTYGTWAA TTCAGCACCATGGACAGCKCC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Reverse Complement Reverse Complement TTWACKAAADGCDKTVTCHATGGTGCTGAA ATYAATGAAWACAT ATTAAYGAAAASATKTVTCHATGGTGCTGAA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TTWACKAAADGCDKTVTCHATGGTGCTGAA ATYAATGAAWACAT----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 51 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A PPARGRXRA Original Motif Original Motif RGGBCAAAGKYCA BTRGGDCARAGGKCA BTRGGBCAAAGGTCA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --RGGBCAAAGKYCA BTRGGDCARAGGKCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif TGACCTTTGBCCKAB TGAMCTTTGMMCYT TGACCTTTGVMCBHB Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGACCTTTGBCCKAB TGAMCTTTGMMCYT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif BHVGRVCAAAGGTCA AAAGGTCAAAGGTCAAC VAAGGTCAAAGGTCAAC Direction: Forward Position #: 1 Overlap #: 15 Alignment: BHVGRVCAAAGGTCA-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement GTTGACCTTTGACCTTB AGTGSWSCACTGTGAMAMCACAGTG AGTGBTGMMCTKTGACMHYACAGTG Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---GTTGACCTTTGACCTTB----- AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Reverse Complement AGTGBTGMMCTKTGACMHYACAGTG VCTSTGKSCMKBCTRCYCTK ASTSTDGMMCTKYKRCMHYDCAGTG Direction: Forward Position #: 1 Overlap #: 20 Alignment: AGTGBTGMMCTKTGACMHYACAGTG VCTSTGKSCMKBCTRCYCTK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Reverse Complement Original Motif CACTGDMDRGKYMRAGRRCHASAST TGGAGCACTGTGACAVCACAGTGG CACTGDAGVRBTRTRRVACCACAGTGG Direction: Forward Position #: 4 Overlap #: 22 Alignment: CACTGDMDRGKYMRAGRRCHASAST-- ---TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement CACTGDAGVRBTRTRRVACCACAGTGG BAGGYCABHBTGACCKHV CACTGVAGGDCWVHVWGACCDHAGTGG Direction: Forward Position #: 6 Overlap #: 18 Alignment: CACTGDAGVRBTRTRRVACCACAGTGG -----BAGGYCABHBTGACCKHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Reverse Complement CCACTDDGGTCWVHVWGDCCTVCAGTG GGAGCACTGTGACACCACA GGASCACTGTGRYMHCAVWGDCCTVCAGTG Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---CCACTDDGGTCWVHVWGDCCTVCAGTG GGAGCACTGTGACACCACA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement GGASCACTGTGRYMHCAVWGDCCTVCAGTG MGGTCAGGGTGACCTRDBHV RGRBCASKGTGACMHVDBHVDCCTVCAGTG Direction: Forward Position #: 1 Overlap #: 20 Alignment: GGASCACTGTGRYMHCAVWGDCCTVCAGTG MGGTCAGGGTGACCTRDBHV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif RGRBCASKGTGACMHVDBHVDCCTVCAGTG TTCAGCACCATGGACAGCKCC TTCAGSACCABGGWSASCDVHBHVDCCTVCAGTG Direction: Forward Position #: 5 Overlap #: 17 Alignment: ----RGRBCASKGTGACMHVDBHVDCCTVCAGTG TTCAGCACCATGGACAGCKCC------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 52 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 NR1H2RXRA Original Motif Reverse Complement TGAMCTTTGMMCYT GTTGACCTTTGACCTTT TTGACCTTTGACCTTGT Direction: Backward Position #: 2 Overlap #: 14 Alignment: --TGAMCTTTGMMCYT- GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif ACAAGGTCAAAGGTCAA BTRGGDCARAGGKCA ASDRGGKCAAAGGTCAA Direction: Forward Position #: 2 Overlap #: 15 Alignment: ACAAGGTCAAAGGTCAA -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement ASDRGGKCAAAGGTCAA AGTGSWSCACTGTGAMAMCACAGTG ASTGGRBCAMWGKKMMAMCACAGTG Direction: Forward Position #: 1 Overlap #: 17 Alignment: ASDRGGKCAAAGGTCAA-------- AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif ASTGGRBCAMWGKKMMAMCACAGTG RAGKGMAGVRRGSRCASAGV ASTGGAGBRMWGDDVVVVCACAGTG Direction: Forward Position #: 5 Overlap #: 20 Alignment: ASTGGRBCAMWGKKMMAMCACAGTG ----RAGKGMAGVRRGSRCASAGV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Original Motif CACTGTGBBBBHDCWRKBCTCCAST VHRGGTCABDBTGMCCTB CHVKGTSABBBYGCHVTBCTCCAST Direction: Forward Position #: 1 Overlap #: 18 Alignment: CACTGTGBBBBHDCWRKBCTCCAST VHRGGTCABDBTGMCCTB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Reverse Complement ASTGGAGBAVDGCMBBVTSACRVHG GGYGCTGTCCATGGTGCTGAA ASTGGHGCWGTSCAHGGTSMYGRDG Direction: Forward Position #: 4 Overlap #: 21 Alignment: ASTGGAGBAVDGCMBBVTSACRVHG ---GGYGCTGTCCATGGTGCTGAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Reverse Complement Original Motif CDKCMRSACCHTGSACWGCHCCAST TGGAGCACTGTGACAVCACAGTGG CDKCMRSACCHTGSACTGSASCACTGTGACAVCACAGTGG Direction: Forward Position #: 17 Overlap #: 9 Alignment: CDKCMRSACCHTGSACWGCHCCAST--------------- ----------------TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Reverse Complement CCACTGTGVTGTCACAGTGSTSCAGTSCAHGGTSMYGRDG GGAGCACTGTGACACCACA GGASCACTGTGAYRYCACAGTGSTSCAGTSCAHGGTSMYGRDG Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---CCACTGTGVTGTCACAGTGSTSCAGTSCAHGGTSMYGRDG GGAGCACTGTGACACCACA------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Original Motif GGASCACTGTGAYRYCACAGTGSTSCAGTSCAHGGTSMYGRDG RGGBCAAAGKYCA GGRBCAMWGTGVHRYCACAGTGSTSCAGTSCAHGGTSMYGRDG Direction: Forward Position #: 1 Overlap #: 13 Alignment: GGASCACTGTGAYRYCACAGTGSTSCAGTSCAHGGTSMYGRDG RGGBCAAAGKYCA------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif GGRBCAMWGTGVHRYCACAGTGSTSCAGTSCAHGGTSMYGRDG VDBHMAGGTCACCCTGACCY GGRBCAVDGBBVDGTCACMSTGVYCYAGTSCAHGGTSMYGRDG Direction: Forward Position #: 7 Overlap #: 20 Alignment: GGRBCAMWGTGVHRYCACAGTGSTSCAGTSCAHGGTSMYGRDG ------VDBHMAGGTCACCCTGACCY----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 53 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement VDBHMAGGTCACCCTGACCY CCACTGTGVTGTCACAGTGCTCCA ACTGTVRKGTCACMSTGMYCYCCA Direction: Backward Position #: 2 Overlap #: 20 Alignment: ---VDBHMAGGTCACCCTGACCY- CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement TGGKGMRCASYGTGACRKVACAGT AGTGSWSCACTGTGAMAMCACAGTG WGKGGAGCACTGTGACAHCACAGTG Direction: Forward Position #: 1 Overlap #: 24 Alignment: TGGKGMRCASYGTGACRKVACAGT- AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Original Motif WGKGGAGCACTGTGACAHCACAGTG RAGKGMAGVRRGSRCASAGV RAGKGSAGCAVDGDSACAGVACAGTG Direction: Forward Position #: 2 Overlap #: 19 Alignment: -WGKGGAGCACTGTGACAHCACAGTG RAGKGMAGVRRGSRCASAGV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Original Motif CACTGTVCTGTSDCDVTGCTSCRCTK TGTGGTGTCACAGTGCTCC CACTGTGYKGTGTCACWGYKCYVCTK Direction: Forward Position #: 6 Overlap #: 19 Alignment: CACTGTVCTGTSDCDVTGCTSCRCTK -----TGTGGTGTCACAGTGCTCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Reverse Complement RAGVMGYMCWGTGACACYMCACAGTG BMSMGCCYMCTKSTGGMHM RDVSMGCCCHSTGVBRSYHMACAGTG Direction: Forward Position #: 2 Overlap #: 19 Alignment: RAGVMGYMCWGTGACACYMCACAGTG -BMSMGCCYMCTKSTGGMHM------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif RDVSMGCCCHSTGVBRSYHMACAGTG VHRGGTCABDBTGMCCTB VDRGVKCMBVBTGVYVBBHMACAGTG Direction: Forward Position #: 1 Overlap #: 18 Alignment: RDVSMGCCCHSTGVBRSYHMACAGTG VHRGGTCABDBTGMCCTB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Reverse Complement CACTGTRDBVVKBCABBBYGRVCMDV GCAGAKGSAGGABDGHDG GCASABKSWGVDBDGHVDBBBYGRVCMDV Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---CACTGTRDBVVKBCABBBYGRVCMDV GCAGAKGSAGGABDGHDG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Reverse Complement Original Motif VDRGVKCMBVBDVHCHBDVCWSYBTSTGC CACACACACACWCACACA HAVRCDCACABDSACAVAVCWSYBTSTGC Direction: Forward Position #: 1 Overlap #: 18 Alignment: VDRGVKCMBVBDVHCHBDVCWSYBTSTGC CACACACACACWCACACA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif HAVRCDCACABDSACAVAVCWSYBTSTGC TTCAGCACCATGGACAGCKCC BWCAGVMMCAHGGACAGHBCHSYBTSTGC Direction: Forward Position #: 1 Overlap #: 21 Alignment: HAVRCDCACABDSACAVAVCWSYBTSTGC TTCAGCACCATGGACAGCKCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AmTGTGACACCACAGT Combined Motif Reverse Complement Reverse Complement GCASABKSDGBDCTGTCCHTGRYVCTGWV ACTGTGGTGTCACART GCASACTGTGGTSTSWCMVTGRYVCTGWV Direction: Forward Position #: 5 Overlap #: 16 Alignment: GCASABKSDGBDCTGTCCHTGRYVCTGWV ----ACTGTGGTGTCACART--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 54 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb NR2F1 Reverse Complement Original Motif TGACCTTGMBBB TGAMCTTTGMMCYT WSMYYTKRMCHBTG Direction: Backward Position #: 1 Overlap #: 12 Alignment: --TGACCTTGMBBB TGAMCTTTGMMCYT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif CAVDGYMYAKKRSW BTRGGDCARAGGKCA CVHRGBVCADRGGTCA Direction: Forward Position #: 2 Overlap #: 13 Alignment: CAVDGYMYAKKRSW-- -BTRGGDCARAGGKCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Reverse Complement Reverse Complement TGACCKHTGVBCMHBG TGMYCTTTGBCCK TGVCCTTTGBHCBHBG Direction: Forward Position #: 1 Overlap #: 13 Alignment: TGACCKHTGVBCMHBG TGMYCTTTGBCCK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Reverse Complement TGVCCTTTGBHCBHBG GTTGACCTTTGACCTTT GTTGACCTTTGACCTDTG Direction: Forward Position #: 3 Overlap #: 15 Alignment: --TGVCCTTTGBHCBHBG GTTGACCTTTGACCTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement GTTGACCTTTGACCTDTG MGGTCAGGGTGACCTRDBHV VKKKMMSKBTGACCTDBGHV Direction: Forward Position #: 1 Overlap #: 18 Alignment: GTTGACCTTTGACCTDTG-- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Reverse Complement VKKKMMSKBTGACCTDBGHV BAGGYCABHBTGACCKHV VDGGHMMBBTKRMCYKDGHV Direction: Forward Position #: 1 Overlap #: 18 Alignment: VKKKMMSKBTGACCTDBGHV BAGGYCABHBTGACCKHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif VDGGHMMBBTKRMCYKDGHV TTCAGCACCATGGACAGCKCC TBHRGHACCHTGGACAGHDVC Direction: Forward Position #: 2 Overlap #: 20 Alignment: -VDGGHMMBBTKRMCYKDGHV TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Original Motif GVHDCTGTCCAHGGTDCKDVA TGTGGTGTCACAGTGCTCC GVHDCTGTCCAHKGTGSTGTMACAGTGCTCC Direction: Forward Position #: 13 Overlap #: 9 Alignment: GVHDCTGTCCAHGGTDCKDVA---------- ------------TGTGGTGTCACAGTGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif GGAGCACTGTRACASCACRHTGGACAGHDVC TGGAGCACTGTGACAVCACAGTGG TGGAGCACTGTGACASCACADTGGACAGHDVC Direction: Forward Position #: 2 Overlap #: 23 Alignment: -GGAGCACTGTRACASCACRHTGGACAGHDVC TGGAGCACTGTGACAVCACAGTGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Original Motif TGGAGCACTGTGACASCACADTGGACAGHDVC CACTGTGRTRTCACAGTGSWSCACT TGGAGCACTGTGAYRBCACAGTGSWCMRCKVC Direction: Forward Position #: 6 Overlap #: 25 Alignment: TGGAGCACTGTGACASCACADTGGACAGHDVC -----CACTGTGRTRTCACAGTGSWSCACT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 55 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ZEB1 Motif 47 Original Motif Original Motif CACCTD YGCCACCTDSTGGY STGGYCACCTDYGC Direction: Backward Position #: 6 Overlap #: 6 Alignment: ---CACCTD----- YGCCACCTDSTGGY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Original Motif STGGYCACCTDYGC CWGAGCCAYCTYTC CBKGGCCACCTBTSC Direction: Forward Position #: 2 Overlap #: 13 Alignment: -STGGYCACCTDYGC CWGAGCCAYCTYTC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Original Motif Reverse Complement CBKGGCCACCTBTSC BMSMGCCYMCTKSTGGMHM CHBVGCCMCCTBBKSGMHM Direction: Forward Position #: 1 Overlap #: 15 Alignment: CBKGGCCACCTBTSC---- BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif RORA_1 Reverse Complement Reverse Complement YDRCSRBVAGGYGGCBBHG TGACCTDVWT TGACCDBVAKGYGGCBBHG Direction: Forward Position #: 1 Overlap #: 10 Alignment: YDRCSRBVAGGYGGCBBHG TGACCTDVWT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif CHBVGCCMCYTVVDGGTCA TTCAGCACCATGGACAGCKCC TTCAGVRCCAYSKACAGSKCM Direction: Forward Position #: 3 Overlap #: 19 Alignment: --CHBVGCCMCYTVVDGGTCA TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Reverse Complement Reverse Complement YGRSCTGTYSKTGGKVCTGAA TGACCTTGMBBB TGACCTKBHBBHGGKVCTGAA Direction: Forward Position #: 1 Overlap #: 12 Alignment: YGRSCTGTYSKTGGKVCTGAA TGACCTTGMBBB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Reverse Complement Original Motif TTCAGVRCCHBBDBRAGGTCA AAAGGTCAAAGGTCAAC TTCAGVRCCHBBDHAAGGTCAAAGGTCAAC Direction: Forward Position #: 14 Overlap #: 8 Alignment: TTCAGVRCCHBBDBRAGGTCA--------- -------------AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 46 Combined Motif Original Motif Original Motif TTCAGVRCCHBBDHAAGGTCAAAGGTCAAC ATAGGTTTAGYATA TTCAGVRCCHBBDHAAGGTCAWAGGTYWAGYATA Direction: Forward Position #: 21 Overlap #: 10 Alignment: TTCAGVRCCHBBDHAAGGTCAAAGGTCAAC---- --------------------ATAGGTTTAGYATA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif TTCAGVRCCHBBDHAAGGTCAWAGGTYWAGYATA BTRGGDCARAGGKCA TTCAGVRCYDBGDVAARGKYMAAGGTYWAGYATA Direction: Forward Position #: 8 Overlap #: 15 Alignment: TTCAGVRCCHBBDHAAGGTCAWAGGTYWAGYATA -------BTRGGDCARAGGKCA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR4A2 Combined Motif Reverse Complement Reverse Complement TATKCTWKACCTTYKRCMTTVHCBDKGKVCTGAA GTGACCTT TATKCKTGACCTTYKRCMTTVHCBDKGKVCTGAA Direction: Forward Position #: 6 Overlap #: 8 Alignment: TATKCTWKACCTTYKRCMTTVHCBDKGKVCTGAA -----GTGACCTT--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 56 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Myc Reverse Complement Reverse Complement GCCACGTGSD DCCACGTGCV GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSD DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Reverse Complement Reverse Complement VSCACGTGGC SBCGCGGGGSB VSCRCGKGGVB Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCACGTGGC- SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Reverse Complement Original Motif BVCCYCGMGSV YDRCCASYAGRKGGCRSYV YBVCCHCGAGVKGGCRSYV Direction: Forward Position #: 2 Overlap #: 11 Alignment: -BVCCYCGMGSV------- YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk Combined Motif Original Motif Reverse Complement YBVCCHCGAGVKGGCRSYV BBSGGCGGGGBS YBVCCVSGMGGGGGCRSYV Direction: Forward Position #: 4 Overlap #: 12 Alignment: YBVCCHCGAGVKGGCRSYV ---BBSGGCGGGGBS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 47 Original Motif Reverse Complement YBVCCVSGMGGGGGCRSYV KCCASDAGGTGGCK KYCACBVGGYGGSGGCRSYV Direction: Forward Position #: 2 Overlap #: 13 Alignment: -YBVCCVSGMGGGGGCRSYV KCCASDAGGTGGCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement KYCACBVGGYGGSGGCRSYV AGTGSWSCACTGTGAMAMCACAGTG TGAMAMCACAGTGRBYGSDVSRCKGKYCACBVG Direction: Backward Position #: 14 Overlap #: 12 Alignment: KYCACBVGGYGGSGGCRSYV------------- --------AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 57 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST TFM12 Reverse Complement Reverse Complement GGYGCTGTCCATGGTGCTGAA VCTSTGKSCMKBCTRCYCTK VCKCTGTCCMTGSTGCTVWDG Direction: Backward Position #: 1 Overlap #: 20 Alignment: GGYGCTGTCCATGGTGCTGAA -VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif VCKCTGTCCMTGSTGCTVWDG AGTGCTCCACTGTGGTGTCACAGT AGTGCTCCACTGYGSTGTCMCWGBTGCTVWDG Direction: Forward Position #: 12 Overlap #: 13 Alignment: -----------VCKCTGTCCMTGSTGCTVWDG AGTGCTCCACTGTGGTGTCACAGT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement AGTGCTCCACTGYGSTGTCMCWGBTGCTVWDG MGGTCAGGGTGACCTRDBHV AGTGCTMSRYYRBGSTGWCMHDGBTVCTVWDG Direction: Forward Position #: 7 Overlap #: 20 Alignment: AGTGCTCCACTGYGSTGTCMCWGBTGCTVWDG ------MGGTCAGGGTGACCTRDBHV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Reverse Complement CHWVAGVABCDHRGWCASCVKMKKSRAGCACT GCAGAKGSAGGABDGHDG CHWBMRSAKSBAGGWCASHVKMKKSRAGCACT Direction: Forward Position #: 4 Overlap #: 18 Alignment: CHWVAGVABCDHRGWCASCVKMKKSRAGCACT ---GCAGAKGSAGGABDGHDG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Reverse Complement Original Motif AGTGCTMSRYYYVDSTGWCCTBSYTSMRBWDG CAGTGCTCCACTGTGBT CAGTGCTCCACTGTGBTGWCCTBSYTSMRBWDG Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AGTGCTMSRYYYVDSTGWCCTBSYTSMRBWDG CAGTGCTCCACTGTGBT---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AmTGTGACACCACAGT Combined Motif Original Motif Original Motif CAGTGCTCCACTGTGBTGWCCTBSYTSMRBWDG AMTGTGACACCACAGT CAVTGYKMCACYRYRGTGWCCTBSYTSMRBWDG Direction: Forward Position #: 2 Overlap #: 16 Alignment: CAGTGCTCCACTGTGBTGWCCTBSYTSMRBWDG -AMTGTGACACCACAGT---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement CAVTGYKMCACYRYRGTGWCCTBSYTSMRBWDG CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVYRYCACAGTGHYCYVSYTSMRBWDG Direction: Forward Position #: 2 Overlap #: 23 Alignment: -CAVTGYKMCACYRYRGTGWCCTBSYTSMRBWDG CCACTGTGVTGTCACAGTGCTCCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Original Motif CHWBMRSAKSBKGMDCACTGTGMMMBCACAGTGG VHRGGTCABDBTGMCCTB CHDGGDCABBBKGMBCWBTGTGMMMBCACAGTGG Direction: Forward Position #: 1 Overlap #: 18 Alignment: CHWBMRSAKSBKGMDCACTGTGMMMBCACAGTGG VHRGGTCABDBTGMCCTB---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Original Motif CHDGGDCABBBKGMBCWBTGTGMMMBCACAGTGG RGGBCAAAGKYCA VDDBSAMAGKBBRMBCWBTGTGMMMBCACAGTGG Direction: Forward Position #: 1 Overlap #: 13 Alignment: CHDGGDCABBBKGMBCWBTGTGMMMBCACAGTGG RGGBCAAAGKYCA--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement VDDBSAMAGKBBRMBCWBTGTGMMMBCACAGTGG TGRCCTKTGHCCKAB VDDKSACMKKTBVMCBABTGTGMMMBCACAGTGG Direction: Forward Position #: 4 Overlap #: 15 Alignment: VDDBSAMAGKBBRMBCWBTGTGMMMBCACAGTGG ---TGRCCTKTGHCCKAB---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 58 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Mycn Reverse Complement Reverse Complement DCCACGTGCV GCCACGTGSD GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCACGTGCV GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Reverse Complement Reverse Complement VSCACGTGGC SBCGCGGGGSB VSCRCGKGGVB Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCACGTGGC- SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCCCCGCSssk Reverse Complement Original Motif BVCCYCGMGSV SBCCCCGCCSBB SBCCCCGCSSBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BVCCYCGMGSV- SBCCCCGCCSBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement SBCCCCGCSSBB BMSMGCCYMCTKSTGGMHM SBYCSCGCCCVCTKSTGGMHM Direction: Forward Position #: 3 Overlap #: 10 Alignment: SBCCCCGCSSBB--------- --BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 47 Combined Motif Reverse Complement Original Motif YDRCCASYAGVGGGCGSGKBS YGCCACCTDSTGGY YBGCCACCWDSKGGCGSGKBS Direction: Forward Position #: 2 Overlap #: 14 Alignment: YDRCCASYAGVGGGCGSGKBS -YGCCACCTDSTGGY------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Reverse Complement SBYCSCGCCRSHWGGTGGCVM AGTGSWSCACTGTGAMAMCACAGTG SBYMSYGCHVCAHKGTGRCMMCACAGTG Direction: Forward Position #: 4 Overlap #: 18 Alignment: SBYCSCGCCRSHWGGTGGCVM------- ---AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Reverse Complement SBYMSYGCHVCAHKGTGRCMMCACAGTG TGMYCTTTGBCCK TGVYCKTKSBVCDHKGTGRCMMCACAGTG Direction: Forward Position #: 2 Overlap #: 12 Alignment: -SBYMSYGCHVCAHKGTGRCMMCACAGTG TGMYCTTTGBCCK---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Original Motif TGVYCKTKSBVCDHKGTGRCMMCACAGTG VDBHMAGGTCACCCTGACCY DBVYMDKGBCACHCTGWSVYMMCACAGTG Direction: Forward Position #: 1 Overlap #: 20 Alignment: TGVYCKTKSBVCDHKGTGRCMMCACAGTG VDBHMAGGTCACCCTGACCY--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Reverse Complement DBVYMDKGBCACHCTGWSVYMMCACAGTG ABCACAGTGGAGCACTG ABCACAGTGGMGCACTGWSVYMMCACAGTG Direction: Forward Position #: 2 Overlap #: 16 Alignment: -DBVYMDKGBCACHCTGWSVYMMCACAGTG ABCACAGTGGAGCACTG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Reverse Complement ABCACAGTGGMGCACTGWSVYMMCACAGTG BAGGYCABHBTGACCKHV BAGSHCABBGKGRCMBTGWSVYMMCACAGTG Direction: Forward Position #: 2 Overlap #: 17 Alignment: -ABCACAGTGGMGCACTGWSVYMMCACAGTG BAGGYCABHBTGACCKHV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 59 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 TFM12 Original Motif Reverse Complement VHRGGTCABDBTGMCCTB VCTSTGKSCMKBCTRCYCTK HVDGGBCABBBTGMCCTBVC Direction: Backward Position #: 1 Overlap #: 18 Alignment: --VHRGGTCABDBTGMCCTB VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement GVBAGGRCABBVTGVCCDVH CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVKGTCACAGTGCYCHAH Direction: Forward Position #: 6 Overlap #: 19 Alignment: -----GVBAGGRCABBVTGVCCDVH CCACTGTGVTGTCACAGTGCTCCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Reverse Complement CCACTGTGVKGTCACAGTGCYCHAH AGTGSWSCACTGTGAMAMCACAGTG CCACTRKKGBDBCACWGTGMYMHMACAGTG Direction: Forward Position #: 6 Overlap #: 20 Alignment: CCACTGTGVKGTCACAGTGCYCHAH----- -----AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Original Motif CCACTRKKGBDBCACWGTGMYMHMACAGTG TTCAGCACCATGGACAGCKCC CCACTRKKGBDBCACWGTKHCAGCACMRTGGACAGCKCC Direction: Forward Position #: 19 Overlap #: 12 Alignment: CCACTRKKGBDBCACWGTGMYMHMACAGTG--------- ------------------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif GGYGCTGTCCAMYGTGCTGHYACWGTGBHBCRYMAGTGG VDBHMAGGTCACCCTGACCY GVHBCWGKYCACYGTGMYBHYACWGTGBHBCRYMAGTGG Direction: Forward Position #: 1 Overlap #: 20 Alignment: GGYGCTGTCCAMYGTGCTGHYACWGTGBHBCRYMAGTGG VDBHMAGGTCACCCTGACCY------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Reverse Complement CCACTRKKGBDBCACWGTKHBKYCACKGTGKRCWGBDVC GGAGCACTGTGACACCACA CCACTRKKGGAGCACTGTGACRYCACDGTGKRCWGBDVC Direction: Forward Position #: 9 Overlap #: 19 Alignment: CCACTRKKGBDBCACWGTKHBKYCACKGTGKRCWGBDVC --------GGAGCACTGTGACACCACA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement CCACTRKKGGAGCACTGTGACRYCACDGTGKRCWGBDVC GCAGAKGSAGGABDGHDG CCACTRBWGVDGCASBRTGVHDBCACDGTGKRCWGBDVC Direction: Forward Position #: 6 Overlap #: 18 Alignment: CCACTRKKGGAGCACTGTGACRYCACDGTGKRCWGBDVC -----GCAGAKGSAGGABDGHDG---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif CCACTRBWGVDGCASBRTGVHDBCACDGTGKRCWGBDVC BTRGGDCARAGGKCA CCACTRBWSDRGSDSARWGGBVVCACDGTGKRCWGBDVC Direction: Forward Position #: 9 Overlap #: 15 Alignment: CCACTRBWGVDGCASBRTGVHDBCACDGTGKRCWGBDVC --------BTRGGDCARAGGKCA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Original Motif GVHBCWGKYCACDGTGBVVCCWKTSDSCMDSWBMAGTGG CWGAGCCAYCTYTC GVHBCWGDGCMABSTBTBVCCWKTSDSCMDSWBMAGTGG Direction: Forward Position #: 5 Overlap #: 14 Alignment: GVHBCWGKYCACDGTGBVVCCWKTSDSCMDSWBMAGTGG ----CWGAGCCAYCTYTC--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Original Motif GVHBCWGDGCMABSTBTBVCCWKTSDSCMDSWBMAGTGG TGAMCTTTGMMCYT TGRVCBYTGVVCMHBSTBTBVCCWKTSDSCMDSWBMAGTGG Direction: Forward Position #: 3 Overlap #: 12 Alignment: --GVHBCWGDGCMABSTBTBVCCWKTSDSCMDSWBMAGTGG TGAMCTTTGMMCYT--------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 60 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA REST Reverse Complement Reverse Complement GTTGACCTTTGACCTTT GGYGCTGTCCATGGTGCTGAA GGYGYTGWCCTTKGWSCTKWA Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---GTTGACCTTTGACCTTT- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Reverse Complement GGYGYTGWCCTTKGWSCTKWA TGRCCTKTGHCCKAB TGRSCKYTGHCCTWBGWSCTKWA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --GGYGYTGWCCTTKGWSCTKWA TGRCCTKTGHCCKAB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Original Motif TWYAGSWCBWAGGHCAMRGSMCA AAAGRTMAAACTA AACTAARRGVWMATWYAGSWCBWAGGHC Direction: Backward Position #: 6 Overlap #: 8 Alignment: TWYAGSWCBWAGGHCAMRGSMCA----- ---------------AAAGRTMAAACTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 61 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR4A2 NR1H2RXRA Original Motif Original Motif AAGGTCAC AAAGGTCAAAGGTCAAC AAAGGTCAMAGGTCAAC Direction: Forward Position #: 2 Overlap #: 8 Alignment: -AAGGTCAC-------- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif GTTGACCTYTGACCTTT VDBHMAGGTCACCCTGACCY VDBHMAGGTCACSYTGACCTYTGACCTTT Direction: Forward Position #: 13 Overlap #: 8 Alignment: ------------GTTGACCTYTGACCTTT VDBHMAGGTCACCCTGACCY--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Original Motif AAAGGTCAMAGGTCAMSGTGACCTRDBHV VHRGGTCABDBTGMCCTB MAAGGTCAVVGKKCMMBBTGACCTRDBHV Direction: Forward Position #: 1 Overlap #: 18 Alignment: AAAGGTCAMAGGTCAMSGTGACCTRDBHV VHRGGTCABDBTGMCCTB----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Combined Motif Original Motif Reverse Complement MAAGGTCAVVGKKCMMBBTGACCTRDBHV GAGGTCAGAAG MGAGGTCAGARGKCMMBBTGACCTRDBHV Direction: Forward Position #: 2 Overlap #: 11 Alignment: MAAGGTCAVVGKKCMMBBTGACCTRDBHV -GAGGTCAGAAG----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Original Motif MGAGGTCAGARGKCMMBBTGACCTRDBHV AAAGRTMAAACTA AAAGGTCARAMKACMMBBTGACCTRDBHV Direction: Forward Position #: 1 Overlap #: 13 Alignment: MGAGGTCAGARGKCMMBBTGACCTRDBHV AAAGRTMAAACTA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif VDBHMAGGTCABVRYGTRRTKTGACCTTT BTRGGDCARAGGKCA VDBBHRGGKCAVAGBKBARTKTGACCTTT Direction: Forward Position #: 4 Overlap #: 15 Alignment: VDBHMAGGTCABVRYGTRRTKTGACCTTT ---BTRGGDCARAGGKCA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 24 Combined Motif Reverse Complement Original Motif AAAGGTCARAMTBYBCTBTGRCCKDBBHV AAAGWCATWAA AMTBYBCTBTGRCCKDBBHVAGASRTHAAAAAGGTCARAMTBYBCTBTG Direction: Backward Position #: 21 Overlap #: 9 Alignment: --AAAGGTCARAMTBYBCTBTGRCCKDBBHV --------------------AAAGWCATWAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 62 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RORA_1 Esrrb Original Motif Original Motif AWVDAGGTCA VBBYCAAGGTCA DTCAAGGTCAVB Direction: Backward Position #: 1 Overlap #: 10 Alignment: --AWVDAGGTCA VBBYCAAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Original Motif DTCAAGGTCAVB VDBHMAGGTCACCCTGACCY VDBCHAGGTCAVBCTGACCY Direction: Forward Position #: 2 Overlap #: 12 Alignment: -DTCAAGGTCAVB------- VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Original Motif Reverse Complement VDBCHAGGTCAVBCTGACCY GTTGACCTTTGACCTTT VDBCHAGGTCAVBYTGACCTTTGACCTTT Direction: Forward Position #: 13 Overlap #: 8 Alignment: VDBCHAGGTCAVBCTGACCY--------- ------------GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Reverse Complement Reverse Complement AAAGGTCAAAGGTCAMBVTGACCTHGVDV AKGYYCAAAGRTCA AARGGTCAAAGGTCAMBVTGACCTHGVDV Direction: Forward Position #: 2 Overlap #: 14 Alignment: AAAGGTCAAAGGTCAMBVTGACCTHGVDV -AKGYYCAAAGRTCA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Original Motif AARGGTCAAAGGTCAMBVTGACCTHGVDV BTRGGDCARAGGKCA VDRGGKCAAAGGTCAMBVTGACCTHGVDV Direction: Forward Position #: 1 Overlap #: 15 Alignment: AARGGTCAAAGGTCAMBVTGACCTHGVDV BTRGGDCARAGGKCA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif VDRGGKCAAAGGTCAMBVTGACCTHGVDV TTCAGCACCATGGACAGCKCC THCAGSACMAHGGWCAGCDYSACCTHGVDV Direction: Forward Position #: 2 Overlap #: 20 Alignment: -VDRGGKCAAAGGTCAMBVTGACCTHGVDV TTCAGCACCATGGACAGCKCC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Original Motif VDBCHAGGTSMHGCTGWCCHTYGTSCTGHA CTGCTGBDBBDGBD VDBCVWGSTGVHBVTGHCCHTYGTSCTGHA Direction: Forward Position #: 5 Overlap #: 14 Alignment: VDBCHAGGTSMHGCTGWCCHTYGTSCTGHA ----CTGCTGBDBBDGBD------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Original Motif THCAGSACMAHGGHCAVBDVCASCWVGVDV RGGBCAAAGKYCA THCAGGDCCAARGDYMVBDVCASCWVGVDV Direction: Forward Position #: 5 Overlap #: 13 Alignment: THCAGSACMAHGGHCAVBDVCASCWVGVDV ----RGGBCAAAGKYCA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement THCAGGDCCAARGDYMVBDVCASCWVGVDV VCTSTGKSCMKBCTRCYCTK THCAGGDCHVWGGVCMDBCDSMBCTBGVDV Direction: Forward Position #: 7 Overlap #: 20 Alignment: THCAGGDCCAARGDYMVBDVCASCWVGVDV ------VCTSTGKSCMKBCTRCYCTK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 63 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Motif 18 Original Motif Original Motif BAACGTCCGC CAAAGTCCAGC CAAMGTCCRSC Direction: Forward Position #: 1 Overlap #: 10 Alignment: BAACGTCCGC- CAAAGTCCAGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Original Motif CAAMGTCCRSC VHRGGTCABDBTGMCCTB CAAVGTCMVBCTGMCCTB Direction: Forward Position #: 1 Overlap #: 11 Alignment: CAAMGTCCRSC------- VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif CAAVGTCMVBCTGMCCTB VDBHMAGGTCACCCTGACCY CAAVGTCMRGSTSACCYTGACCY Direction: Forward Position #: 4 Overlap #: 15 Alignment: CAAVGTCMVBCTGMCCTB----- ---VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Reverse Complement Reverse Complement MGGTCAKGGTSASCKRGACVTTG GTTGACCTTTGACCTTT MGGTCAKGGTSASSTTGACCTTTGACCTTT Direction: Forward Position #: 14 Overlap #: 10 Alignment: MGGTCAKGGTSASCKRGACVTTG------- -------------GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- gCGCGCsCgsG Combined Motif Original Motif Original Motif MGGTCAKGGTSASSTTGACCTTTGACCTTT GCGCGCSCGCG GTSASSTTGACCTTTGACCTTTCGSBCRBGMGGTCAKGGTSASSTTGACCTT Direction: Backward Position #: 23 Overlap #: 8 Alignment: ---MGGTCAKGGTSASSTTGACCTTTGACCTTT ----------------------GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Reverse Complement AAGGTCAASSTSACCYTGACCYCBMGBSCGAAAGGTCAAAGGTCAASSTSAC BMSMGCCYMCTKSTGGMHM AAGGTCAASSTBASCBYSHCCTBSHGGSCRAAAGGTCAAAGGTCAASSTSAC Direction: Forward Position #: 12 Overlap #: 19 Alignment: AAGGTCAASSTSACCYTGACCYCBMGBSCGAAAGGTCAAAGGTCAASSTSAC -----------BMSMGCCYMCTKSTGGMHM---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Reverse Complement AAGGTCAASSTBASCBYSHCCTBSHGGSCRAAAGGTCAAAGGTCAASSTSAC GGYGCTGTCCATGGTGCTGAA AAGGTCAASSTGVBVCTSTCCHBGGKGCYGAAAGGTCAAAGGTCAASSTSAC Direction: Forward Position #: 12 Overlap #: 21 Alignment: AAGGTCAASSTBASCBYSHCCTBSHGGSCRAAAGGTCAAAGGTCAASSTSAC -----------GGYGCTGTCCATGGTGCTGAA-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif AAGGTCAASSTGVBVCTSTCCHBGGKGCYGAAAGGTCAAAGGTCAASSTSAC CTGCTGBDBBDGBD AAGGTCAASSTGVHGCTGHCCHHGBKGCYGAAAGGTCAAAGGTCAASSTSAC Direction: Forward Position #: 13 Overlap #: 14 Alignment: AAGGTCAASSTGVBVCTSTCCHBGGKGCYGAAAGGTCAAAGGTCAASSTSAC ------------CTGCTGBDBBDGBD-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement AAGGTCAASSTGVHGCTGHCCHHGBKGCYGAAAGGTCAAAGGTCAASSTSAC VCTSTGKSCMKBCTRCYCTK AAGGTCAASSTGVCKCTGBCCHBBCKGCYVWDAGGTCAAAGGTCAASSTSAC Direction: Forward Position #: 13 Overlap #: 20 Alignment: AAGGTCAASSTGVHGCTGHCCHHGBKGCYGAAAGGTCAAAGGTCAASSTSAC ------------VCTSTGKSCMKBCTRCYCTK-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 1 Reverse Complement Original Motif GTSASSTTGACCTTTGACCTDWVMGCRGBVDGGVCAGRGVCASSTTGACCTT CYTSCCTCTGC CBTSMCYYTGMCCTTTGACCTDWVMGCRGBVDGGVCAGRGVCASSTTGACCTT Direction: Forward Position #: 2 Overlap #: 10 Alignment: -GTSASSTTGACCTTTGACCTDWVMGCRGBVDGGVCAGRGVCASSTTGACCTT CYTSCCTCTGC------------------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 64 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA NR1H2RXRA Original Motif Original Motif BTRGGDCARAGGKCA AAAGGTCAAAGGTCAAC ACVDRGGTCAAAGGTCA Direction: Backward Position #: 3 Overlap #: 15 Alignment: BTRGGDCARAGGKCA-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Reverse Complement TGACCTTTGACCKDBGT BAGGYCABHBTGACCKHV BAGKBMMCTBTGACCKDBGT Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---TGACCTTTGACCKDBGT BAGGYCABHBTGACCKHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif BAGKBMMCTBTGACCKDBGT RAGKGMAGVRRGSRCASAGV VAGKGMMSHDKGRCCWVDGH Direction: Forward Position #: 1 Overlap #: 20 Alignment: BAGKBMMCTBTGACCKDBGT RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement VAGKGMMSHDKGRCCWVDGH MGGTCAGGGTGACCTRDBHV VRGTSAVGBTKRCCYDDVBH Direction: Forward Position #: 1 Overlap #: 20 Alignment: VAGKGMMSHDKGRCCWVDGH MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Reverse Complement HBBHHKGGMYABCBTSACKB AGTGSWSCACTGTGAMAMCACAGTG HBABTGGDVCACTGTGACDHCACAGTG Direction: Forward Position #: 3 Overlap #: 18 Alignment: HBBHHKGGMYABCBTSACKB------- --AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Original Motif HBABTGGDVCACTGTGACDHCACAGTG YDRCCASYAGRKGGCRSYV HBHBDSCASCASDGKGMVVHCACAGTG Direction: Forward Position #: 3 Overlap #: 19 Alignment: HBABTGGDVCACTGTGACDHCACAGTG --YDRCCASYAGRKGGCRSYV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Original Motif HBHBDSCASCASDGKGMVVHCACAGTG CHHCHBTCCTSCYTCTGC CHHVHHDBCBVCYWSDGBGMVVHCACAGTG Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---HBHBDSCASCASDGKGMVVHCACAGTG CHHCHBTCCTSCYTCTGC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Original Motif CACTGTGDVVRCVCDSWKGVVGBDHDVHDG TTCAGCACCATGGACAGCKCC CACTGTDTCAGCACHVTGGACRGVDVVHDG Direction: Forward Position #: 7 Overlap #: 21 Alignment: CACTGTGDVVRCVCDSWKGVVGBDHDVHDG ------TTCAGCACCATGGACAGCKCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement CACTGTDTCAGCACHVTGGACRGVDVVHDG CCACTGTGVTGTCACAGTGCTCCA CCACTGTGBYRKCACAGTGSWCVRVDVVHDG Direction: Forward Position #: 2 Overlap #: 23 Alignment: -CACTGTDTCAGCACHVTGGACRGVDVVHDG CCACTGTGVTGTCACAGTGCTCCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement CCACTGTGBYRKCACAGTGSWCVRVDVVHDG GGAGCACTGTGACACCACA GGASCACTGTGAYABCACAGTGSWCVRVDVVHDG Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---CCACTGTGBYRKCACAGTGSWCVRVDVVHDG GGAGCACTGTGACACCACA--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 65 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 ESR1 Original Motif Reverse Complement CCAGYYHVADCCRG MGGTCAGGGTGACCTRDBHV MGGYCAGBBTGAVCYRGBHV Direction: Forward Position #: 4 Overlap #: 14 Alignment: ---CCAGYYHVADCCRG--- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Original Motif VDBCKKGVTCAVVCTGKCCY YDRCCASYAGRKGGCRSYV VDBYDDSCWCHAGVKGGCVBYV Direction: Forward Position #: 4 Overlap #: 17 Alignment: VDBCKKGVTCAVVCTGKCCY-- ---YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement BMBVGCCRVCTDGWGSHHKBHV VCTSTGKSCMKBCTRCYCTK BCTSKSCVVCTDSWGSYHKBHV Direction: Forward Position #: 1 Overlap #: 20 Alignment: BMBVGCCRVCTDGWGSHHKBHV VCTSTGKSCMKBCTRCYCTK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif BCTSKSCVVCTDSWGSYHKBHV CHHCHBTCCTSCYTCTGC BCTSBBHVHHTBCTSCYYBDBH Direction: Forward Position #: 5 Overlap #: 18 Alignment: BCTSKSCVVCTDSWGSYHKBHV ----CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Original Motif DBDBMKGSAGBADDVDBBSAGV CTGCTGBDBBDGBD DBDBVKGCWGBDBBDGBBSAGV Direction: Forward Position #: 5 Overlap #: 14 Alignment: DBDBMKGSAGBADDVDBBSAGV ----CTGCTGBDBBDGBD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Original Motif BCTSBBCHBBDBCWGCRVBDBH VHRGGTCABDBTGMCCTB BHDGGTCABBDBSASCDVBDBH Direction: Forward Position #: 1 Overlap #: 18 Alignment: BCTSBBCHBBDBCWGCRVBDBH VHRGGTCABDBTGMCCTB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Original Motif BHDGGTCABBDBSASCDVBDBH BTRGGDCARAGGKCA BHRGGBCAVVGKBHVCDVBDBH Direction: Forward Position #: 1 Overlap #: 15 Alignment: BHDGGTCABBDBSASCDVBDBH BTRGGDCARAGGKCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement DBDBVDGBDBYCBBTGVCCMHB CTSTGTBKMCTGH DBDBCWGTRBYBHHTGVCCMHB Direction: Forward Position #: 5 Overlap #: 13 Alignment: DBDBVDGBDBYCBBTGVCCMHB ----CTSTGTBKMCTGH----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Original Motif DBDBCWGTRBYBHHTGVCCMHB CWGAGCCAYCTYTC DBDBCWGDGCCAYCTBHCCMHB Direction: Forward Position #: 5 Overlap #: 14 Alignment: DBDBCWGTRBYBHHTGVCCMHB ----CWGAGCCAYCTYTC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Original Motif Original Motif DBDBCWGDGCCAYCTBHCCMHB CAGTGCTCCACTGTGBT DBDBCWGDGCCABYKCTCCACTGTGBT Direction: Forward Position #: 11 Overlap #: 12 Alignment: DBDBCWGDGCCAYCTBHCCMHB----- ----------CAGTGCTCCACTGTGBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 66 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF TFM12 Reverse Complement Reverse Complement BMSMGCCYMCTKSTGGMHM VCTSTGKSCMKBCTRCYCTK BCBMKSCCCCTBSTGSHCHK Direction: Forward Position #: 1 Overlap #: 19 Alignment: BMSMGCCYMCTKSTGGMHM- VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement RHGDSCASVAGGGGSYRVGV MGGTCAGGGTGACCTRDBHV VDGDCMDGVWGRSSBBGVVV Direction: Forward Position #: 1 Overlap #: 20 Alignment: RHGDSCASVAGGGGSYRVGV MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif VDGDCMDGVWGRSSBBGVVV AGTGCTCCACTGTGGTGTCACAGT AGTGCTCCACTGTGVTGTCAVRVTGRSSBBGVVV Direction: Forward Position #: 15 Overlap #: 10 Alignment: --------------VDGDCMDGVWGRSSBBGVVV AGTGCTCCACTGTGGTGTCACAGT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement AGTGCTCCACTGTGVTGTCAVRVTGRSSBBGVVV AGTGSWSCACTGTGAMAMCACAGTG AGTGCTSCACTGTGVHRHCACAGTGRSSBBGVVV Direction: Forward Position #: 1 Overlap #: 25 Alignment: AGTGCTCCACTGTGVTGTCAVRVTGRSSBBGVVV AGTGSWSCACTGTGAMAMCACAGTG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Original Motif BVVCBBSSKCACTGTGHMDBCACAGTGSAGCACT CHHCHBTCCTSCYTCTGC CHHBHBHBCDSYCWCTGYGHMDBCACAGTGSAGCACT Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---BVVCBBSSKCACTGTGHMDBCACAGTGSAGCACT CHHCHBTCCTSCYTCTGC------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Reverse Complement Original Motif AGTGCTSCACTGTGVHRHCMCAGWGKSDGBHBDBHDG CAGTGCTCCACTGTGBT CAGTGCTCCACTGTGVTRHCMCAGWGKSDGBHBDBHDG Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AGTGCTSCACTGTGVHRHCMCAGWGKSDGBHBDBHDG CAGTGCTCCACTGTGBT--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Original Motif Reverse Complement CAGTGCTCCACTGTGVTRHCMCAGWGKSDGBHBDBHDG AGTGCTCCACTGTGDTG CAGTGCTCCACTGTGVTGHCMCAGWGKSDGBHBDBHDG Direction: Forward Position #: 2 Overlap #: 17 Alignment: CAGTGCTCCACTGTGVTRHCMCAGWGKSDGBHBDBHDG -AGTGCTCCACTGTGDTG-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement CHHBHBHBCDSYCWCTGYGHCAVCACAGTGGAGCACTG CCACTGTGVTGTCACAGTGCTCCA CCACTGTGBTGTCACWGTGCYMCMACAGTGGAGCACTG Direction: Forward Position #: 1 Overlap #: 24 Alignment: CHHBHBHBCDSYCWCTGYGHCAVCACAGTGGAGCACTG CCACTGTGVTGTCACAGTGCTCCA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement CCACTGTGBTGTCACWGTGCYMCMACAGTGGAGCACTG GAKAGKTGGCTCWG CCABHKWGKTGKCWCWGTGCYMCMACAGTGGAGCACTG Direction: Forward Position #: 4 Overlap #: 14 Alignment: CCACTGTGBTGTCACWGTGCYMCMACAGTGGAGCACTG ---GAKAGKTGGCTCWG--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 47 Original Motif Reverse Complement CCABHKWGKTGKCWCWGTGCYMCMACAGTGGAGCACTG KCCASDAGGTGGCK BCMVVKAGGTGGCDCWGTGCYMCMACAGTGGAGCACTG Direction: Forward Position #: 1 Overlap #: 14 Alignment: CCABHKWGKTGKCWCWGTGCYMCMACAGTGGAGCACTG KCCASDAGGTGGCK------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 67 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif GGAGCACTGTGACACCACA TGGAGCACTGTGACAVCACAGTGG GTGGGGAGCACTGTGACACCACAT Direction: Backward Position #: 5 Overlap #: 19 Alignment: -GGAGCACTGTGACACCACA---- TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif ATGTGGTGTCACAGTGCTCCCCAC CACTGTGRTRTCACAGTGSWSCACT CAMTGTGVTGTCACAGTGCTCCMCWC Direction: Forward Position #: 3 Overlap #: 23 Alignment: --ATGTGGTGTCACAGTGCTCCCCAC CACTGTGRTRTCACAGTGSWSCACT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AgTGCTCCACTGTGgTGTCACAgT Combined Motif Original Motif Reverse Complement CAMTGTGVTGTCACAGTGCTCCMCWC ACTGTGACACCACAGTGGAGCACT CAMTGTGAYRYCACAGTGSWSCACWC Direction: Forward Position #: 2 Overlap #: 24 Alignment: CAMTGTGVTGTCACAGTGCTCCMCWC -ACTGTGACACCACAGTGGAGCACT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif GWGTGSWSCACTGTGMKKTCACARTG VDBHMAGGTCACCCTGACCY VGHVYRSKBCACYSTGMYBTCACARTG Direction: Forward Position #: 2 Overlap #: 19 Alignment: -GWGTGSWSCACTGTGMKKTCACARTG VDBHMAGGTCACCCTGACCY------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement VGHVYRSKBCACYSTGMYBTCACARTG VCTSTGKSCMKBCTRCYCTK VSTSTGBVBCDBYDDSMCTBCACARTG Direction: Forward Position #: 1 Overlap #: 20 Alignment: VGHVYRSKBCACYSTGMYBTCACARTG VCTSTGKSCMKBCTRCYCTK------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Original Motif VSTSTGBVBCDBYDDSMCTBCACARTG VHRGGTCABDBTGMCCTB VHRGGTCWVBBYSHCCTBSMCTBCACARTG Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---VSTSTGBVBCDBYDDSMCTBCACARTG VHRGGTCABDBTGMCCTB------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Reverse Complement Original Motif CAMTGTGVAGYSVAGGHSMBBVWGACCKHV CAGTGCTCCACTGTGBT CAVTGYKMCACBGTGGTSMBBVWGACCKHV Direction: Forward Position #: 1 Overlap #: 17 Alignment: CAMTGTGVAGYSVAGGHSMBBVWGACCKHV CAGTGCTCCACTGTGBT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AmTGTGACACCACAGT Combined Motif Original Motif Original Motif CAVTGYKMCACBGTGGTSMBBVWGACCKHV AMTGTGACACCACAGT CAVTGTGACACCRYRGTSMBBVWGACCKHV Direction: Forward Position #: 2 Overlap #: 16 Alignment: CAVTGYKMCACBGTGGTSMBBVWGACCKHV -AMTGTGACACCACAGT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Reverse Complement Reverse Complement VHRGGTCWVBBYSACKKKGGTGTCACAVTG TGTGTGDKTGTGTGTGTRTG TVTRKGTBWGTGTGWSTGTGGTGTCACAVTG Direction: Forward Position #: 2 Overlap #: 19 Alignment: -VHRGGTCWVBBYSACKKKGGTGTCACAVTG TGTGTGDKTGTGTGTGTRTG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement TVTRKGTBWGTGTGWSTGTGGTGTCACAVTG TGTGTGWGTGTGTGTGTG TVTRTGTGTGTGTGTGTGTGKKGTCACAVTG Direction: Forward Position #: 5 Overlap #: 18 Alignment: TVTRKGTBWGTGTGWSTGTGGTGTCACAVTG ----TGTGTGWGTGTGTGTGTG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 68 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sscCCCGCGcs ssCCCCGCSssk Original Motif Original Motif BSCCCCGCGBS SBCCCCGCCSBB SSCCCCGCSSSB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BSCCCCGCGBS- SBCCCCGCCSBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif gCGCGCsCgsG Reverse Complement Original Motif BSSSGCGGGGSS GCGCGCSCGCG BCGCGCGSGSGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: BSSSGCGGGGSS GCGCGCSCGCG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCkTGCssk Reverse Complement Original Motif SCSCSCGCGCGB SSGCKTGCSSK SSGCGYGCSSKB Direction: Forward Position #: 1 Overlap #: 11 Alignment: SCSCSCGCGCGB SSGCKTGCSSK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Reverse Complement Reverse Complement BYSSGCMCGCSS BMSMGCCYMCTKSTGGMHM BHSCGCCYSCKBSTGGMHM Direction: Forward Position #: 1 Overlap #: 12 Alignment: BYSSGCMCGCSS------- BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Reverse Complement YDRCCASBRGSKGGCGSDV GCAGAKGSAGGABDGHDG YDRBCASHDGSDGGMBVGHDG Direction: Forward Position #: 4 Overlap #: 16 Alignment: YDRCCASBRGSKGGCGSDV-- ---GCAGAKGSAGGABDGHDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif YDRBCASHDGSDGGMBVGHDG RAGKGMAGVRRGSRCASAGV YDRBCAGDGSVGVGVGVRVDSAGV Direction: Forward Position #: 5 Overlap #: 17 Alignment: YDRBCASHDGSDGGMBVGHDG--- ----RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement YDRBCAGDGSVGVGVGVRVDSAGV MGGTCAGGGTGACCTRDBHV HGGBCAGDGBGRCSDGVVVVSAGV Direction: Forward Position #: 1 Overlap #: 20 Alignment: YDRBCAGDGSVGVGVGVRVDSAGV MGGTCAGGGTGACCTRDBHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cCGCGGrCACG Combined Motif Reverse Complement Original Motif VCTSBVVVCDSGKCVCHCTGVCCD CCGCGGRCACG VCTSBVCCGCGGDCACVCTGVCCD Direction: Forward Position #: 7 Overlap #: 11 Alignment: VCTSBVVVCDSGKCVCHCTGVCCD ------CCGCGGRCACG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif VCTSBVCCGCGGDCACVCTGVCCD TTCAGCACCATGGACAGCKCC TBCWGBACCVHGGACASVBYSVCCD Direction: Forward Position #: 2 Overlap #: 20 Alignment: -VCTSBVCCGCGGDCACVCTGVCCD TTCAGCACCATGGACAGCKCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 Combined Motif Reverse Complement Original Motif HGGBSMBVSTGTCCDBGGTBCWGVA CYTSCCTCTGC HGGYBTSCCTSTSCDBGGTBCWGVA Direction: Forward Position #: 4 Overlap #: 11 Alignment: HGGBSMBVSTGTCCDBGGTBCWGVA ---CYTSCCTCTGC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 69 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- atactttggc wwCCAmAGTCmt Reverse Complement Original Motif GCCAAAGTAT DDCCAMAGTCHB BGCCAAAGTMTD Direction: Backward Position #: 2 Overlap #: 10 Alignment: -GCCAAAGTAT- DDCCAMAGTCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif taaacgatgcc Reverse Complement Original Motif DAYACTTTGGCV TAAACGATGCC TAWACKWTGSCV Direction: Forward Position #: 1 Overlap #: 11 Alignment: DAYACTTTGGCV TAAACGATGCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Reverse Complement TAWACKWTGSCV GTTGACCTTTGACCTTT GTTRAMCTTTGVCCTTT Direction: Forward Position #: 3 Overlap #: 12 Alignment: --TAWACKWTGSCV--- GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement GTTRAMCTTTGVCCTTT GGAGCACTGTGACACCACA GKWGMACTKTGACMYYWCA Direction: Forward Position #: 1 Overlap #: 17 Alignment: GTTRAMCTTTGVCCTTT-- GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Reverse Complement TGWMMYGTCAYAGTRCWRC AGTGSWSCACTGTGAMAMCACAGTG TRDHGBRKCACWGTGMHACCACAGTG Direction: Forward Position #: 2 Overlap #: 18 Alignment: TGWMMYGTCAYAGTRCWRC------- -AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Reverse Complement Reverse Complement CACTGTGGTHYCACWGTGRMBCHHKA TGMYCTTTGBCCK TGMHCTKTGBYCBCACWGTGRMBCHHKA Direction: Forward Position #: 3 Overlap #: 11 Alignment: --CACTGTGGTHYCACWGTGRMBCHHKA TGMYCTTTGBCCK--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Original Motif TGMHCTKTGBYCBCACWGTGRMBCHHKA TGAMCTTTGMMCYT TGAMCTTTGVHCHYACWGTGRMBCHHKA Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGMHCTKTGBYCBCACWGTGRMBCHHKA TGAMCTTTGMMCYT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif TGAMCTTTGVHCHYACWGTGRMBCHHKA TGGAGCACTGTGACAVCACAGTGG TGGWGMACTKTGACMHCACAGTGRMBCHHKA Direction: Forward Position #: 4 Overlap #: 21 Alignment: ---TGAMCTTTGVHCHYACWGTGRMBCHHKA TGGAGCACTGTGACAVCACAGTGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif TGGWGMACTKTGACMHCACAGTGRMBCHHKA AGTGCTCCACTGTGGTGTCACAGT AGTGSTSCACTGTGVYRTCACAGTGRMBCHHKA Direction: Forward Position #: 3 Overlap #: 22 Alignment: --TGGWGMACTKTGACMHCACAGTGRMBCHHKA AGTGCTCCACTGTGGTGTCACAGT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 70 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT CTCF Original Motif Reverse Complement CAGTGCTCCACTGTGBT BMSMGCCYMCTKSTGGMHM SMGYSCYCYACTGKGBHBM Direction: Backward Position #: 1 Overlap #: 17 Alignment: --CAGTGCTCCACTGTGBT BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement SMGYSCYCYACTGKGBHBM GGYGCTGTCCATGGTGCTGAA GSMGCTSTCCABKGTGCTGAA Direction: Forward Position #: 2 Overlap #: 19 Alignment: -SMGYSCYCYACTGKGBHBM- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Reverse Complement TTCAGCACYBTGGASAGCRSC GGAGCACTGTGACACCACA TTCAGCACYBTGGAGMRCWGYGACACCACA Direction: Forward Position #: 12 Overlap #: 10 Alignment: TTCAGCACYBTGGASAGCRSC--------- -----------GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Reverse Complement TGTGGTGTCMCWGKRCTCCABKGTGCTGAA ACTGTGACACCACAGTGGAGCACT ACTGTGRYRYCACAGTGSWSCACTGTGCTGAA Direction: Forward Position #: 3 Overlap #: 22 Alignment: --TGTGGTGTCMCWGKRCTCCABKGTGCTGAA ACTGTGACACCACAGTGGAGCACT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Reverse Complement ACTGTGRYRYCACAGTGSWSCACTGTGCTGAA AGTGSWSCACTGTGAMAMCACAGTG ACWGTGVWGCMMYRKKRVAVCACWGTGCTGAA Direction: Forward Position #: 3 Overlap #: 25 Alignment: ACTGTGRYRYCACAGTGSWSCACTGTGCTGAA --AGTGSWSCACTGTGAMAMCACAGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Original Motif ACWGTGVWGCMMYRKKRVAVCACWGTGCTGAA TGGAGCACTGTGACAVCACAGTGG ACWGTGGAGCACTGTGACAVCACAGTGSTGAA Direction: Forward Position #: 5 Overlap #: 24 Alignment: ACWGTGVWGCMMYRKKRVAVCACWGTGCTGAA ----TGGAGCACTGTGACAVCACAGTGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Reverse Complement TTCASCACTGTGVTGTCACAGTGCTCCACWGT AGTGCTCCACTGTGDTG AGTKCWCCACTGTGVTGTCACAGTGCTCCACWGT Direction: Forward Position #: 3 Overlap #: 15 Alignment: --TTCASCACTGTGVTGTCACAGTGCTCCACWGT AGTGCTCCACTGTGDTG----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Reverse Complement Reverse Complement ACWGTGGAGCACTGTGACAVCACAGTGGWGYACT ACTGTGGTGTCACART ACTGTGGTGYMMYRKKACAVCACAGTGGWGYACT Direction: Forward Position #: 1 Overlap #: 16 Alignment: ACWGTGGAGCACTGTGACAVCACAGTGGWGYACT ACTGTGGTGTCACART------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 47 Combined Motif Reverse Complement Original Motif AGTKCWCCACTGTGVTGTRRKKYRMCACCACAGT YGCCACCTDSTGGY AGTGCYMCMYTGTGGTGTRRKKYRMCACCACAGT Direction: Forward Position #: 3 Overlap #: 14 Alignment: AGTKCWCCACTGTGVTGTRRKKYRMCACCACAGT --YGCCACCTDSTGGY------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif ACTGTGGTGYMMYRKKACACCACAKRGRKGCACT RAGKGMAGVRRGSRCASAGV ACTGDRGDGHMRHRDKRVMHCASDKRGRKGCACT Direction: Forward Position #: 5 Overlap #: 20 Alignment: ACTGTGGTGYMMYRKKACACCACAKRGRKGCACT ----RAGKGMAGVRRGSRCASAGV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 71 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AmTGTGACACCACAGT AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif ACTGTGGTGTCACART AGTGCTCCACTGTGGTGTCACAGT ACTGTGGTGTCACAGTAGTGCTCC Direction: Backward Position #: 1 Overlap #: 16 Alignment: --------ACTGTGGTGTCACART AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif GGAGCACTACTGTGACACCACAGT TGGAGCACTGTGACAVCACAGTGG TGGAGCACTRTKRYRACACMRYRGT Direction: Forward Position #: 2 Overlap #: 23 Alignment: -GGAGCACTACTGTGACACCACAGT TGGAGCACTGTGACAVCACAGTGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement TGGAGCACTRTKRYRACACMRYRGT AGTGSWSCACTGTGAMAMCACAGTG AGTGGAGCACTGTGAYAMCACAGTRGT Direction: Forward Position #: 3 Overlap #: 23 Alignment: --TGGAGCACTRTKRYRACACMRYRGT AGTGSWSCACTGTGAMAMCACAGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Reverse Complement ACMACTGTGYTKTCACAGTGCTCCACT GGAGCACTGTGACACCACA GGASCACTGTGAYABCACAGTGCTCCACT Direction: Forward Position #: 3 Overlap #: 17 Alignment: --ACMACTGTGYTKTCACAGTGCTCCACT GGAGCACTGTGACACCACA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Reverse Complement Reverse Complement AGTGGAGCACTGTGBTKTCACAGTGSTCC ABCACAGTGGAGCACTG AGTGGASCACWGTGGWGYMMYRGTGSTCC Direction: Forward Position #: 6 Overlap #: 17 Alignment: AGTGGAGCACTGTGBTKTCACAGTGSTCC -----ABCACAGTGGAGCACTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement AGTGGASCACWGTGGWGYMMYRGTGSTCC VCTSTGKSCMKBCTRCYCTK AGTGGAVCWCWGTGVHKHCHBVBYKBTCC Direction: Forward Position #: 7 Overlap #: 20 Alignment: AGTGGASCACWGTGGWGYMMYRGTGSTCC ------VCTSTGKSCMKBCTRCYCTK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Original Motif Reverse Complement AGTGGAVCWCWGTGVHKHCHBVBYKBTCC AGTGCTCCACTGTGDTG AGTGSWCCACTGTGVTGHCHBVBYKBTCC Direction: Forward Position #: 1 Overlap #: 17 Alignment: AGTGGAVCWCWGTGVHKHCHBVBYKBTCC AGTGCTCCACTGTGDTG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif GGABYMBVBHGDCAVCACAGTGGWSCACT VDBHMAGGTCACCCTGACCY GGABYMVVBHVDSRBCACHSTGVMSYACT Direction: Forward Position #: 7 Overlap #: 20 Alignment: GGABYMBVBHGDCAVCACAGTGGWSCACT ------VDBHMAGGTCACCCTGACCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement AGTKSRBCASHGTGVMSDVDBVVYKBTCC GGYGCTGTCCATGGTGCTGAA GGHGYTGTCCABBGTGCTGDVDBVVYKBTCC Direction: Forward Position #: 3 Overlap #: 19 Alignment: --AGTKSRBCASHGTGVMSDVDBVVYKBTCC GGYGCTGTCCATGGTGCTGAA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement GGABYMVVBHBDCAGCACBVTGGACAKCHCC HVCDBBDBCAGCAG GGABYMVVBHBBBVSMRCHVTGGACAKCHCC Direction: Forward Position #: 7 Overlap #: 14 Alignment: GGABYMVVBHBDCAGCACBVTGGACAKCHCC ------HVCDBBDBCAGCAG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 72 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement CACTGTGRTRTCACAGTGSWSCACT ACTGTGACACCACAGTGGAGCACT ACTGTGAYAYCACAGTGSAGCACTC Direction: Backward Position #: 1 Overlap #: 24 Alignment: CACTGTGRTRTCACAGTGSWSCACT -ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement ACTGTGAYAYCACAGTGSAGCACTC CCACTGTGVTGTCACAGTGCTCCA CCACTGTGRTRTCACAGTGSWSCACTC Direction: Forward Position #: 3 Overlap #: 22 Alignment: --ACTGTGAYAYCACAGTGSAGCACTC CCACTGTGVTGTCACAGTGCTCCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Original Motif GAGTGSWSCACTGTGAMAKCACAGTGG RAGKGMAGVRRGSRCASAGV GAGTGSWGCAVKGTSAVAGCACAGTGG Direction: Forward Position #: 1 Overlap #: 20 Alignment: GAGTGSWSCACTGTGAMAKCACAGTGG RAGKGMAGVRRGSRCASAGV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Original Motif GAGTGSWGCAVKGTSAVAGCACAGTGG VDBHMAGGTCACCCTGACCY VVVVHRGRKCAVBSTGACMBCACAGTGG Direction: Forward Position #: 2 Overlap #: 19 Alignment: -GAGTGSWGCAVKGTSAVAGCACAGTGG VDBHMAGGTCACCCTGACCY-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Reverse Complement CCACTGTGVRGTCASVVTGYMCMHVBVV BMSMGCCYMCTKSTGGMHM CCACTGTVVVGYCHCCTKGTGSMHVBVV Direction: Forward Position #: 7 Overlap #: 19 Alignment: CCACTGTGVRGTCASVVTGYMCMHVBVV ------BMSMGCCYMCTKSTGGMHM--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement CCACTGTVVVGYCHCCTKGTGSMHVBVV GGAGCACTGTGACACCACA GGASCACTGTGACRCCACMTKGTGSMHVBVV Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---CCACTGTVVVGYCHCCTKGTGSMHVBVV GGAGCACTGTGACACCACA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Original Motif Original Motif GGASCACTGTGACRCCACMTKGTGSMHVBVV CAHCACAGTGGAGCACT CRBMACASTGKRRCACYACMTKGTGSMHVBVV Direction: Forward Position #: 2 Overlap #: 16 Alignment: -GGASCACTGTGACRCCACMTKGTGSMHVBVV CAHCACAGTGGAGCACT--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Reverse Complement Original Motif VVVVDRSCACRAYGTKGTGMKYCASTGTRBKG CAGTGCTCCACTGTGBT CVGDGCTCCACWRTGBTGTGMKYCASTGTRBKG Direction: Forward Position #: 2 Overlap #: 16 Alignment: -VVVVDRSCACRAYGTKGTGMKYCASTGTRBKG CAGTGCTCCACTGTGBT---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif CVGDGCTCCACWRTGBTGTGMKYCASTGTRBKG CHHCHBTCCTSCYTCTGC CVGHVHBCCWCHDBSYTSTGCKYCASTGTRBKG Direction: Forward Position #: 4 Overlap #: 18 Alignment: CVGDGCTCCACWRTGBTGTGMKYCASTGTRBKG ---CHHCHBTCCTSCYTCTGC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Original Motif CRBMACASTGKRGCASAKSVDDGWGGBDVHCBG VHRGGTCABDBTGMCCTB CRBMACASTGGGKCABVBBRDBSTBGBDVHCBG Direction: Forward Position #: 8 Overlap #: 18 Alignment: CRBMACASTGKRGCASAKSVDDGWGGBDVHCBG -------VHRGGTCABDBTGMCCTB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 73 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif CCACTGTGVTGTCACAGTGCTCCA CACTGTGRTRTCACAGTGSWSCACT CCMMYKKKGTKKYMMMRKKSYHCMACT Direction: Forward Position #: 3 Overlap #: 23 Alignment: CCACTGTGVTGTCACAGTGCTCCA----------------------------- --CACTGTGRTRTCACAGTGSWSCACT-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif CCMMYKKKGTKKYMMMRKKSYHCMACT AGTGCTCCACTGTGGTGTCACAGT AGTGCYCCACTGTGKTGTCACAKTSYHCMACT Direction: Forward Position #: 6 Overlap #: 19 Alignment: -----CCMMYKKKGTKKYMMMRKKSYHCMACT AGTGCTCCACTGTGGTGTCACAGT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement AGTGCYCCACTGTGKTGTCACAKTSYHCMACT BAGGYCABHBTGACCKHV AGTGCYCCABKBYRBBBTSACMKTSYHCMACT Direction: Forward Position #: 8 Overlap #: 18 Alignment: AGTGCYCCACTGTGKTGTCACAKTSYHCMACT -------BAGGYCABHBTGACCKHV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Reverse Complement AGTGCYCCABKBYRBBBTSACMKTSYHCMACT GCAGAKGSAGGABDGHDG DSWGMKSCAGKDBRBHDKSACMKTSYHCMACT Direction: Forward Position #: 1 Overlap #: 18 Alignment: AGTGCYCCABKBYRBBBTSACMKTSYHCMACT GCAGAKGSAGGABDGHDG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement DSWGMKSCAGKDBRBHDKSACMKTSYHCMACT MGGTCAGGGTGACCTRDBHV DSWGMKSMRGKCHDGBTKVMCHKDBBHCMACT Direction: Forward Position #: 8 Overlap #: 20 Alignment: DSWGMKSCAGKDBRBHDKSACMKTSYHCMACT -------MGGTCAGGGTGACCTRDBHV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif DSWGMKSMRGKCHDGBTKVMCHKDBBHCMACT RAGKGMAGVRRGSRCASAGV DSWGMKSVAGKVVDGVDGRVVBDBVBHCMACT Direction: Forward Position #: 8 Overlap #: 20 Alignment: DSWGMKSMRGKCHDGBTKVMCHKDBBHCMACT -------RAGKGMAGVRRGSRCASAGV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement DSWGMKSVAGKVVDGVDGRVVBDBVBHCMACT GGAGCACTGTGACACCACA DSWGMKGVAGBACWGTGACACCABABHCMACT Direction: Forward Position #: 7 Overlap #: 19 Alignment: DSWGMKSVAGKVVDGVDGRVVBDBVBHCMACT ------GGAGCACTGTGACACCACA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif DSWGMKGVAGBACWGTGACACCABABHCMACT CAGTGCTCCACTGTGBT CAGTGCTSCASTRYGGTGACACCABABHCMACT Direction: Forward Position #: 2 Overlap #: 16 Alignment: -DSWGMKGVAGBACWGTGACACCABABHCMACT CAGTGCTCCACTGTGBT---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Reverse Complement AGTRGDBTBTGGTGTCACCMMASTGSAGCACTG AGTGCTCCACTGTGDTG AGTRSTVSACTGTGGTGTCACCMMASTGSAGCACTG Direction: Forward Position #: 4 Overlap #: 14 Alignment: ---AGTRGDBTBTGGTGTCACCMMASTGSAGCACTG AGTGCTCCACTGTGDTG------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Reverse Complement Reverse Complement CAGTGCTSCASTRYGGTGACACCACAGTSVASKACT BMSMGCCYMCTKSTGGMHM BHSHGCYCCMBBGTGGHBACACCACAGTSVASKACT Direction: Forward Position #: 1 Overlap #: 19 Alignment: CAGTGCTSCASTRYGGTGACACCACAGTSVASKACT BMSMGCCYMCTKSTGGMHM----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 74 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk TFM2 Original Motif Original Motif SBCCCCGCCSBB CHHCHBTCCTSCYTCTGC GCBBYCCYGCCBCTCHHC Direction: Backward Position #: 3 Overlap #: 12 Alignment: ----SBCCCCGCCSBB-- CHHCHBTCCTSCYTCTGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif GCBBYCCYGCCBCTCHHC VDBHMAGGTCACCCTGACCY GCBBBCCHRSSTCWCHHYGACCY Direction: Forward Position #: 4 Overlap #: 15 Alignment: GCBBYCCYGCCBCTCHHC----- ---VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Original Motif MGGTCMDDGWGASSMDGGBBBGC YDRCCASYAGRKGGCRSYV HGGYCABBRGGDGGCRSBVBBGC Direction: Forward Position #: 1 Overlap #: 19 Alignment: MGGTCMDDGWGASSMDGGBBBGC YDRCCASYAGRKGGCRSYV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif HGGYCABBRGGDGGCRSBVBBGC BTRGGDCARAGGKCA HBDVSRBBARRGGKCRSBVBBGC Direction: Forward Position #: 2 Overlap #: 15 Alignment: HGGYCABBRGGDGGCRSBVBBGC -BTRGGDCARAGGKCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif HBDVSRBBARRGGKCRSBVBBGC RAGKGMAGVRRGSRCASAGV VVDDSVDSARRGGDCASDGVBGC Direction: Forward Position #: 1 Overlap #: 20 Alignment: HBDVSRBBARRGGKCRSBVBBGC RAGKGMAGVRRGSRCASAGV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Reverse Complement GCBVCDSTGHCCMKTSDBSHHBB BAGGYCABHBTGACCKHV BAGBHCMHVBKGMCCKHVDBSHHBB Direction: Forward Position #: 3 Overlap #: 16 Alignment: --GCBVCDSTGHCCMKTSDBSHHBB BAGGYCABHBTGACCKHV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Reverse Complement BAGBHCMHVBKGMCCKHVDBSHHBB GGYGCTGTCCATGGTGCTGAA BAGBHVVHVCTGHCCDTGGTSCTGHA Direction: Forward Position #: 6 Overlap #: 20 Alignment: BAGBHCMHVBKGMCCKHVDBSHHBB- -----GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 47 Combined Motif Reverse Complement Original Motif THCAGSACCADGGHCAGVDVVHBCTB YGCCACCTDSTGGY THCAGSACCADGGHCAGYGCCMCCTDSTGGY Direction: Forward Position #: 18 Overlap #: 9 Alignment: THCAGSACCADGGHCAGVDVVHBCTB----- -----------------YGCCACCTDSTGGY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Reverse Complement Original Motif KCCASHAGGYGGCKCTGHCCDTGGTSCTGHA BSCCCCGCGBS BBCCMCGMGBBGGCKCTGHCCDTGGTSCTGHA Direction: Forward Position #: 2 Overlap #: 10 Alignment: -KCCASHAGGYGGCKCTGHCCDTGGTSCTGHA BSCCCCGCGBS--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif gCGCGCsCgsG Original Motif Original Motif BBCCMCGMGBBGGCKCTGHCCDTGGTSCTGHA GCGCGCSCGCG BCSCGCGCGSGGGCKCTGHCCDTGGTSCTGHA Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBCCMCGMGBBGGCKCTGHCCDTGGTSCTGHA GCGCGCSCGCG--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 75 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwCCAmAGTCmt CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif DDCCAMAGTCHB CACTGTGRTRTCACAGTGSWSCACT SCACTHDYCACAGTSBWCACTGTGR Direction: Backward Position #: 6 Overlap #: 12 Alignment: --------DDCCAMAGTCHB----- CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif SCACTHDYCACAGTSBWCACTGTGR CAGTGCTCCACTGTGBT CMRYKCTCCACWGTGBTCACTGTGR Direction: Forward Position #: 1 Overlap #: 17 Alignment: SCACTHDYCACAGTSBWCACTGTGR CAGTGCTCCACTGTGBT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Original Motif MCACAGTGABCACWGTGGAGRMKRG CAHCACAGTGGAGCACT CAVCACAGTGRASMMHKTGGAGRMKRG Direction: Forward Position #: 3 Overlap #: 15 Alignment: --MCACAGTGABCACWGTGGAGRMKRG CAHCACAGTGGAGCACT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif CAVCACAGTGRASMMHKTGGAGRMKRG AGTGCTCCACTGTGGTGTCACAGT AGTGCWCCACWGTGGWGWCABWGKAGRMKRG Direction: Forward Position #: 5 Overlap #: 20 Alignment: ----CAVCACAGTGRASMMHKTGGAGRMKRG AGTGCTCCACTGTGGTGTCACAGT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Reverse Complement Reverse Complement CMRYKCTRCWBTGWCWCCACWGTGGWGCACT TGMYCTTTGBCCK TSMHCTYTGCHCTGWCWCCACWGTGGWGCACT Direction: Forward Position #: 2 Overlap #: 12 Alignment: -CMRYKCTRCWBTGWCWCCACWGTGGWGCACT TGMYCTTTGBCCK------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Original Motif TSMHCTYTGCHCTGWCWCCACWGTGGWGCACT CAMACACACACAYDCACACA TSMHCTYTGCHCTGWCWCCACWGTGGHRCACWCACACAYDCACACA Direction: Forward Position #: 27 Overlap #: 6 Alignment: TSMHCTYTGCHCTGWCWCCACWGTGGWGCACT-------------- --------------------------CAMACACACACAYDCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement TGTGTGDKTGTGTGWGTGMDCCACWGTGGWGWCAGHGCAMAGHRSA CCACTGTGVTGTCACAGTGCTCCA CYRYKKKGKTGTSWSWGTGCTCCACWGTGGWGWCAGHGCAMAGHRSA Direction: Forward Position #: 2 Overlap #: 23 Alignment: -TGTGTGDKTGTGTGWGTGMDCCACWGTGGWGWCAGHGCAMAGHRSA CCACTGTGVTGTCACAGTGCTCCA----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Reverse Complement TSMHCTYTGCHCTGWCWCCACWGTGGAGCACWSWSACAYCRRRMKMG GGYGCTGTCCATGGTGCTGAA TSMHCTYTGBVHBSTSTCCAYDGTGSWGMACWSWSACAYCRRRMKMG Direction: Forward Position #: 10 Overlap #: 21 Alignment: TSMHCTYTGCHCTGWCWCCACWGTGGAGCACWSWSACAYCRRRMKMG ---------GGYGCTGTCCATGGTGCTGAA----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Reverse Complement CYRYKKKGKTGTSWSWGTRCWSCACHKTGGASASBDVBCAMAGHRSA GGAGCACTGTGACACCACA CYRBWGBRSTGTGACASYACASCACHKTGGASASBDVBCAMAGHRSA Direction: Forward Position #: 3 Overlap #: 19 Alignment: CYRYKKKGKTGTSWSWGTRCWSCACHKTGGASASBDVBCAMAGHRSA --GGAGCACTGTGACACCACA-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif TSMHCTYTGBVHBSTSTCCAYDGTGSTGTMSTGTCACASKBCWBMMG VDBHMAGGTCACCCTGACCY TSMHCTYTGVDBBVWGKYCACBGTGVYSTMSTGTCACASKBCWBMMG Direction: Forward Position #: 10 Overlap #: 20 Alignment: TSMHCTYTGBVHBSTSTCCAYDGTGSTGTMSTGTCACASKBCWBMMG ---------VDBHMAGGTCACCCTGACCY------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 76 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement CAHCACAGTGGAGCACT ACTGTGACACCACAGTGGAGCACT ACTGTGACACCACAGTGGAGCACT Direction: Forward Position #: 8 Overlap #: 17 Alignment: -------CAHCACAGTGGAGCACT ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGAMAMCACAGTG AGTGCTSCACTGTGVYRTCACAGTG Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTGCTCCACTGTGGTGTCACAGT- AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement AGTGCTSCACTGTGVYRTCACAGTG GGYGCTGTCCATGGTGCTGAA GGHGYKSTCCAYKGTGCTGHMACAGTG Direction: Forward Position #: 3 Overlap #: 19 Alignment: --AGTGCTSCACTGTGVYRTCACAGTG GGYGCTGTCCATGGTGCTGAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement GGHGYKSTCCAYKGTGCTGHMACAGTG GGAGCACTGTGACACCACA GGHGYGGWSCACTGTGMYRHCACAGTG Direction: Forward Position #: 6 Overlap #: 19 Alignment: GGHGYKSTCCAYKGTGCTGHMACAGTG -----GGAGCACTGTGACACCACA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement GGHGYGGWSCACTGTGMYRHCACAGTG BMSMGCCYMCTKSTGGMHM GGHGYDSMGCMCHSTGVTGVCAMAGTG Direction: Forward Position #: 5 Overlap #: 19 Alignment: GGHGYGGWSCACTGTGMYRHCACAGTG ----BMSMGCCYMCTKSTGGMHM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Original Motif GGHGYDSMGCMCHSTGVTGVCAMAGTG TGGAGCACTGTGACAVCACAGTGG GGHGTGGAGCACTGTGAYRVCACAGTGG Direction: Forward Position #: 5 Overlap #: 23 Alignment: GGHGYDSMGCMCHSTGVTGVCAMAGTG- ----TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Reverse Complement Original Motif CCACTGTGVKKTCACAGTGCTCCACHCC CAGTGCTCCACTGTGBT CCACYRKKGYTYCACWGTGSTCCACHCC Direction: Forward Position #: 5 Overlap #: 17 Alignment: CCACTGTGVKKTCACAGTGCTCCACHCC ----CAGTGCTCCACTGTGBT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Reverse Complement Original Motif GGHGTGGASCACWGTGKAKCRRKMGTGG AMTGTGACACCACAGT AVKRKKRSACCACAGTGKAKCRRKMGTGG Direction: Forward Position #: 2 Overlap #: 15 Alignment: -GGHGTGGASCACWGTGKAKCRRKMGTGG AMTGTGACACCACAGT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwCCAmAGTCmt Reverse Complement Reverse Complement CCACYRKKGYTYCACTGTGGTSKYRMRVT VDGACTRTGGDD VVSACTRTGGHTYCACTGTGGTSKYRMRVT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -CCACYRKKGYTYCACTGTGGTSKYRMRVT VDGACTRTGGDD------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement VVSACTRTGGHTYCACTGTGGTSKYRMRVT VCTSTGKSCMKBCTRCYCTK VVSACBSTSKBKBCABTSTGSTSTBRMRVT Direction: Forward Position #: 6 Overlap #: 20 Alignment: VVSACTRTGGHTYCACTGTGGTSKYRMRVT -----VCTSTGKSCMKBCTRCYCTK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 77 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AgTGCTCCACTGTGgTGTCACAgT CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGAMAMCACAGTG ARKKGMKCMMYKKKRVWVYMMMRKK Direction: Forward Position #: 2 Overlap #: 24 Alignment: -AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Original Motif ARKKGMKCMMYKKKRVWVYMMMRKK TGGAGCACTGTGACAVCACAGTGG ARTGGAKCACTGTGACAVCACAGTGG Direction: Forward Position #: 3 Overlap #: 23 Alignment: ARKKGMKCMMYKKKRVWVYMMMRKK- --TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Original Motif ARTGGAKCACTGTGACAVCACAGTGG TTCAGCACCATGGACAGCKCC ARTGGAKCACTGTKDCAGCACMRTGGACAGCKCC Direction: Forward Position #: 14 Overlap #: 13 Alignment: ARTGGAKCACTGTGACAVCACAGTGG-------- -------------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Original Motif ARTGGAKCACTGTKDCAGCACMRTGGACAGCKCC TGTGGTGTCACAGTGCTCC TGTRGTGKMDCASTGYTHCAGCACMRTGGACAGCKCC Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---ARTGGAKCACTGTKDCAGCACMRTGGACAGCKCC TGTGGTGTCACAGTGCTCC------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Original Motif GGYGCTGTCCAKRGTGCTGDAMCASTGDRRCACMACA YDRCCASYAGRKGGCRSYV GGYGCTGKCCABVRKGBKGBRVYASTGDRRCACMACA Direction: Forward Position #: 6 Overlap #: 19 Alignment: GGYGCTGTCCAKRGTGCTGDAMCASTGDRRCACMACA -----YDRCCASYAGRKGGCRSYV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Original Motif Original Motif GGYGCTGKCCABVRKGBKGBRVYASTGDRRCACMACA CAHCACAGTGGAGCACT GGYGCTSWCCACAGTGGRGCACYASTGDRRCACMACA Direction: Forward Position #: 7 Overlap #: 17 Alignment: GGYGCTGKCCABVRKGBKGBRVYASTGDRRCACMACA ------CAHCACAGTGGAGCACT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Original Motif Reverse Complement GGYGCTSWCCACAGTGGRGCACYASTGDRRCACMACA ABCACAGTGGAGCACTG GGYGCTSACCACAGTGGAGCACTRSTGDRRCACMACA Direction: Forward Position #: 8 Overlap #: 17 Alignment: GGYGCTSWCCACAGTGGRGCACYASTGDRRCACMACA -------ABCACAGTGGAGCACTG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif GGYGCTSACCACAGTGGAGCACTRSTGDRRCACMACA AMTGTGACACCACAGT AVKBKSWCACCACAGTGGAGCACTRSTGDRRCACMACA Direction: Forward Position #: 2 Overlap #: 15 Alignment: -GGYGCTSACCACAGTGGAGCACTRSTGDRRCACMACA AMTGTGACACCACAGT---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Original Motif TGTRGTGKMDCASMAGTGCTCCACTGTGGTGWSRBRVT RAGKGMAGVRRGSRCASAGV RAGKKVWGVDGKVRCASAVVTGCTCCACTGTGGTGWSRBRVT Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----TGTRGTGKMDCASMAGTGCTCCACTGTGGTGWSRBRVT RAGKGMAGVRRGSRCASAGV---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Reverse Complement AVKBKSWCACCACAGTGGAGCAVVTSTGKVYCDVCWVRYCTK MGGTCAGGGTGACCTRDBHV AVKBKSASRYCASRGTGRMSYRVVHVTGKVYCDVCWVRYCTK Direction: Forward Position #: 7 Overlap #: 20 Alignment: AVKBKSWCACCACAGTGGAGCAVVTSTGKVYCDVCWVRYCTK ------MGGTCAGGGTGACCTRDBHV---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 78 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGCkTGCssk gCGCGCsCgsG Original Motif Original Motif SSGCKTGCSSK GCGCGCSCGCG SCGCGYGCSSG Direction: Backward Position #: 1 Overlap #: 11 Alignment: SSGCKTGCSSK GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk Combined Motif Reverse Complement Original Motif CSSGCKCGCGS SBCCCCGCCSBB CSSSCBCGCSSBB Direction: Forward Position #: 2 Overlap #: 10 Alignment: CSSGCKCGCGS-- -SBCCCCGCCSBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sscCCCGCGcs Combined Motif Original Motif Reverse Complement CSSSCBCGCSSBB SBCGCGGGGSB CSSSCGCGSGSBB Direction: Forward Position #: 3 Overlap #: 11 Alignment: CSSSCBCGCSSBB --SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cCGCGGrCACG Original Motif Reverse Complement CSSSCGCGSGSBB CGTGKCCGCGG CGBGYSCGCGSBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: CSSSCGCGSGSBB CGTGKCCGCGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 79 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cCGCGGrCACG gCGCGCsCgsG Original Motif Original Motif CCGCGGRCACG GCGCGCSCGCG SCGCGSRCRCG Direction: Backward Position #: 1 Overlap #: 11 Alignment: CCGCGGRCACG GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Original Motif SCGCGSRCRCG CTGCTGBDBBDGBD SYGCKGVCDCDGBD Direction: Forward Position #: 1 Overlap #: 11 Alignment: SCGCGSRCRCG--- CTGCTGBDBBDGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement SYGCKGVCDCDGBD GGYGCTGTCCATGGTGCTGAA GSYGCTGBCCVDGGTGCTGAA Direction: Forward Position #: 2 Overlap #: 14 Alignment: -SYGCKGVCDCDGBD------ GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Original Motif GSYGCTGBCCVDGGTGCTGAA VDBHMAGGTCACCCTGACCY VGBHVMKGTCMVBSKKVCYKAA Direction: Forward Position #: 2 Overlap #: 19 Alignment: -GSYGCTGBCCVDGGTGCTGAA VDBHMAGGTCACCCTGACCY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGCkTGCssk Combined Motif Original Motif Original Motif VGBHVMKGTCMVBSKKVCYKAA SSGCKTGCSSK VGSSGCKKGCVSBSKKVCYKAA Direction: Forward Position #: 3 Overlap #: 11 Alignment: VGBHVMKGTCMVBSKKVCYKAA --SSGCKTGCSSK--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk Combined Motif Reverse Complement Reverse Complement TTYMGBYRSVSVGCRYGCSSCV BBSGGCGGGGBS TTYHGBSGCGGGGBVYGCSSCV Direction: Forward Position #: 4 Overlap #: 12 Alignment: TTYMGBYRSVSVGCRYGCSSCV ---BBSGGCGGGGBS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Reverse Complement Reverse Complement VGSSGCKVBCCCCGCSBCDKAA BMSMGCCYMCTKSTGGMHM BVSCGCSHVCYBSKSGHCVKAA Direction: Forward Position #: 1 Overlap #: 19 Alignment: VGSSGCKVBCCCCGCSBCDKAA BMSMGCCYMCTKSTGGMHM--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Original Motif TTYBGDCSRSBMGVDSGCGSBB HCAGRRVACASAG TTCWGGVVRSVVRGDSGCGSBB Direction: Forward Position #: 2 Overlap #: 13 Alignment: TTYBGDCSRSBMGVDSGCGSBB -HCAGRRVACASAG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 80 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- taaacgatgcc Motif 46 Original Motif Reverse Complement TAAACGATGCC TATKCTAAACCTAT TMWAMRMYKMYTAT Direction: Backward Position #: 1 Overlap #: 11 Alignment: ---TAAACGATGCC TATKCTAAACCTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 23 Reverse Complement Reverse Complement ATAKYYKYKYTWYA ATYAATGAAWACAT ATYAATGAAWAYATYYKYKYTWYA Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------ATAKYYKYKYTWYA ATYAATGAAWACAT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Reverse Complement Reverse Complement TKWAKYKYKKATKTWTTCATTKAT GTTGACCTTTGACCTTT KATKTWTTCATTKATTTDABCKTTTKWAKYKYKKATKTW Direction: Backward Position #: 16 Overlap #: 9 Alignment: --------TKWAKYKYKKATKTWTTCATTKAT ---------------GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 81 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ctatacggacg Motif 27 Original Motif Reverse Complement CTATACGGACG CTTKACAGAAT CTWTACRGAMK Direction: Backward Position #: 1 Overlap #: 11 Alignment: CTATACGGACG CTTKACAGAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif srACyCCGAyr Reverse Complement Reverse Complement YYTCKGTAWAG KKTCGGKGTKS BBTCGGTRTDG Direction: Forward Position #: 1 Overlap #: 11 Alignment: YYTCKGTAWAG KKTCGGKGTKS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 46 Combined Motif Original Motif Original Motif BBTCGGTRTDG ATAGGTTTAGYATA BDTMGGTKTAGYATA Direction: Forward Position #: 2 Overlap #: 10 Alignment: BBTCGGTRTDG---- -ATAGGTTTAGYATA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Original Motif Reverse Complement BDTMGGTKTAGYATA TGTGTGWGTGTGTGTGTG TGTGTGWGTGTVKGTGTRGYATA Direction: Forward Position #: 9 Overlap #: 10 Alignment: --------BDTMGGTKTAGYATA TGTGTGWGTGTGTGTGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 82 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- gCGCGCsCgsG cCGCGGrCACG Original Motif Original Motif GCGCGCSCGCG CCGCGGRCACG SCGCGSRCRCG Direction: Backward Position #: 1 Overlap #: 11 Alignment: GCGCGCSCGCG CCGCGGRCACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCkTGCssk Reverse Complement Reverse Complement CGKGMSCGCGS YSSGCAYGCSS CSBGCRCGCGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: CGKGMSCGCGS YSSGCAYGCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Original Motif Reverse Complement CSBGCRCGCGS SBCGCGGGGSB CSCGCGSGSGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: CSBGCRCGCGS SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCCCCGCSssk Reverse Complement Original Motif SCSCSCGCGSG SBCCCCGCCSBB SSSCSCGCSSBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: SCSCSCGCGSG- SBCCCCGCCSBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement SSSCSCGCSSBB BMSMGCCYMCTKSTGGMHM SSBCSCGCCCVCTKSTGGMHM Direction: Forward Position #: 3 Overlap #: 10 Alignment: SSSCSCGCSSBB--------- --BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Reverse Complement YDRCCASYAGVGGGCGSGBSS MGGTCAGGGTGACCTRDBHV HGGYCASBRKGDSSYGSGBVS Direction: Forward Position #: 1 Overlap #: 20 Alignment: YDRCCASYAGVGGGCGSGBSS MGGTCAGGGTGACCTRDBHV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Reverse Complement Reverse Complement SVBCSCKSSHCRKBSTGKCCD HVCDBBDBCAGCAG HVVDBBVBCRGCABBSTGKCCD Direction: Forward Position #: 2 Overlap #: 13 Alignment: -SVBCSCKSSHCRKBSTGKCCD HVCDBBDBCAGCAG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Combined Motif Original Motif Original Motif HVVDBBVBCRGCABBSTGKCCD BAACGTCCGC HVBHACGTCCGCABBSTGKCCD Direction: Forward Position #: 3 Overlap #: 10 Alignment: HVVDBBVBCRGCABBSTGKCCD --BAACGTCCGC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 47 Combined Motif Reverse Complement Original Motif HGGYCASBBTGCGGACGTHBVD YGCCACCTDSTGGY HBGCCACCYDGYGGHCGTHBVD Direction: Forward Position #: 2 Overlap #: 14 Alignment: HGGYCASBBTGCGGACGTHBVD -YGCCACCTDSTGGY------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Reverse Complement Reverse Complement HVBHACGHCCMCDMGGTGGCVD DCCACGTGCV HBCCACGTSCVCDMGGTGGCVD Direction: Forward Position #: 2 Overlap #: 10 Alignment: HVBHACGHCCMCDMGGTGGCVD -DCCACGTGCV----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 83 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- srACyCCGAyr TFM11 Reverse Complement Reverse Complement KKTCGGKGTKS TGTGTGDKTGTGTGTGTRTG GTGTRTGKKTSGGTGTGBTG Direction: Backward Position #: 8 Overlap #: 11 Alignment: --KKTCGGKGTKS------- TGTGTGDKTGTGTGTGTRTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement GTGTRTGKKTSGGTGTGBTG MGGTCAGGGTGACCTRDBHV MGGTSWGKGTGWCBKDGTBBTG Direction: Forward Position #: 3 Overlap #: 18 Alignment: --GTGTRTGKKTSGGTGTGBTG MGGTCAGGGTGACCTRDBHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif CABBACHYBGWCACRCWSACCY CACACACACACWCACACA CABCACACVSACACRCACACMY Direction: Forward Position #: 4 Overlap #: 18 Alignment: CABBACHYBGWCACRCWSACCY ---CACACACACACWCACACA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif CABCACACVSACACRCACACMY TGGAGCACTGTGACAVCACAGTGG TGGAGCACTGTGACABCACASWGRCACRCACACMY Direction: Forward Position #: 14 Overlap #: 11 Alignment: -------------CABCACACVSACACRCACACMY TGGAGCACTGTGACAVCACAGTGG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Reverse Complement TGGAGCACTGTGACABCACASWGRCACRCACACMY BAGGYCABHBTGACCKHV TRGRBCACTGTGACMBHRCASWGRCACRCACACMY Direction: Forward Position #: 1 Overlap #: 18 Alignment: TGGAGCACTGTGACABCACASWGRCACRCACACMY BAGGYCABHBTGACCKHV----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Original Motif TRGRBCACTGTGACMBHRCASWGRCACRCACACMY TGTGGTGTCACAGTGCTCC TGTKGKGTCACWGTGMYCCHRCASWGRCACRCACACMY Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---TRGRBCACTGTGACMBHRCASWGRCACRCACACMY TGTGGTGTCACAGTGCTCC------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Reverse Complement Reverse Complement MYGTGTGKGTGKCWSTGKDGGMYCACWGTGACRCYACA TGTGTSWGTBTSTG TRTGTSWGKKTGTSWSTGKDGGMYCACWGTGACRCYACA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -MYGTGTGKGTGKCWSTGKDGGMYCACWGTGACRCYACA TGTGTSWGTBTSTG------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif TGTKGKGTCACWGTGMYCCHRCASWSACAYRCWSACAMA CACTGTGRTRTCACAGTGSWSCACT CACTGTGRTGTCACAGTGCTCCAVYASWSACAYRCWSACAMA Direction: Forward Position #: 4 Overlap #: 22 Alignment: ---TGTKGKGTCACWGTGMYCCHRCASWSACAYRCWSACAMA CACTGTGRTRTCACAGTGSWSCACT----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Original Motif CACTGTGRTGTCACAGTGCTCCAVYASWSACAYRCWSACAMA TTCAGCACCATGGACAGCKCC CACTGTGRTGTCACAGTGCTCCAVYABTCASMACCWBRSACAGCKCC Direction: Forward Position #: 27 Overlap #: 16 Alignment: CACTGTGRTGTCACAGTGCTCCAVYASWSACAYRCWSACAMA----- --------------------------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Reverse Complement Reverse Complement GGYGCTGTSMBWGGTYSTGAVTMVTGGAGCACTGTGACAMCACAGTG GTGTGTGTGTGTGT GGYGSTGTSHGTGTBTGTGAVTMVTGGAGCACTGTGACAMCACAGTG Direction: Forward Position #: 5 Overlap #: 14 Alignment: GGYGCTGTSMBWGGTYSTGAVTMVTGGAGCACTGTGACAMCACAGTG ----GTGTGTGTGTGTGT----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 84 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement GCACTG GGAGCACTGTGACACCACA ACAGMMMYSGGAGCACTGT Direction: Backward Position #: 4 Overlap #: 6 Alignment: ----------GCACTG--- GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif ACAGTGCTCCSMRRYCTGT CACTGTGRTRTCACAGTGSWSCACT CACWGTGVTVYCAVABYKSTSCACT Direction: Forward Position #: 2 Overlap #: 19 Alignment: -ACAGTGCTCCSMRRYCTGT----- CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement CACWGTGVTVYCAVABYKSTSCACT CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVTGTCACAGTGCTCCACT Direction: Forward Position #: 2 Overlap #: 23 Alignment: -CACWGTGVTVYCAVABYKSTSCACT CCACTGTGVTGTCACAGTGCTCCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Reverse Complement AGTGGAGCACTGTGACAVCACAGTGG AGTGCTCCACTGTGDTG AGTGSWSCACTGTGVYRVCACAGTGG Direction: Forward Position #: 1 Overlap #: 17 Alignment: AGTGGAGCACTGTGACAVCACAGTGG AGTGCTCCACTGTGDTG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif AGTGSWSCACTGTGVYRVCACAGTGG CAGTGCTCCACTGTGBT CAGTGCTCCACTGTGVTRVCACAGTGG Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AGTGSWSCACTGTGVYRVCACAGTGG CAGTGCTCCACTGTGBT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AgTGCTCCACTGTGgTGTCACAgT Combined Motif Reverse Complement Reverse Complement CCACTGTGVKAVCACAGTGGAGCACTG ACTGTGACACCACAGTGGAGCACT CCACTGTGABABCACAGTGGAGCACTG Direction: Forward Position #: 3 Overlap #: 24 Alignment: CCACTGTGVKAVCACAGTGGAGCACTG --ACTGTGACACCACAGTGGAGCACT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement CAGTGCTCCACTGTGBTBTCACAGTGG GGYGCTGTCCATGGTGCTGAA GSHGYKSTCCAYKGTGCTGHMACAGTGG Direction: Forward Position #: 2 Overlap #: 20 Alignment: -CAGTGCTCCACTGTGBTBTCACAGTGG GGYGCTGTCCATGGTGCTGAA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Original Motif Original Motif GSHGYKSTCCAYKGTGCTGHMACAGTGG CCAGYYHVADCCRG SCAGYTBTMVMCDGTGCTGHMACAGTGG Direction: Forward Position #: 1 Overlap #: 14 Alignment: GSHGYKSTCCAYKGTGCTGHMACAGTGG CCAGYYHVADCCRG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Original Motif CCACTGTRHCAGCACHGRVRABAMCTGS CWGAGCCAYCTYTC CCACTGWGCCABCWCTBRVRABAMCTGS Direction: Forward Position #: 4 Overlap #: 14 Alignment: CCACTGTRHCAGCACHGRVRABAMCTGS ---CWGAGCCAYCTYTC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwCCAmAGTCmt Original Motif Reverse Complement CCACTGWGCCABCWCTBRVRABAMCTGS VDGACTRTGGDD VVSACTGTGSHABCWCTBRVRABAMCTGS Direction: Forward Position #: 2 Overlap #: 11 Alignment: -CCACTGWGCCABCWCTBRVRABAMCTGS VDGACTRTGGDD----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 85 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Motif 21 Original Motif Reverse Complement TTGCGCAA TTYGGAAAGCAG KWRMGCARTTYG Direction: Backward Position #: 1 Overlap #: 8 Alignment: ----TTGCGCAA TTYGGAAAGCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Original Motif KWRMGCARTTYG TGAMCTTTGMMCYT TGAMCTTTRMVCADTTYG Direction: Forward Position #: 7 Overlap #: 8 Alignment: ------KWRMGCARTTYG TGAMCTTTGMMCYT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Reverse Complement TGAMCTTTRMVCADTTYG TGRCCTKTGHCCKAB TGACCTTTGVVCDDTTYG Direction: Forward Position #: 1 Overlap #: 15 Alignment: TGAMCTTTRMVCADTTYG TGRCCTKTGHCCKAB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 28 Original Motif Original Motif TGACCTTTGVVCDDTTYG ATTTAGTAAA TAAARTTYAGTGACCTTTGVVC Direction: Backward Position #: 5 Overlap #: 6 Alignment: TGACCTTTGVVCDDTTYG---- ------------ATTTAGTAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Reverse Complement Original Motif GVVCAAAGGTCACTMAAKTTTA CAHCACAGTGGAGCACT GVVCAAAGGTCACYACAKTKKAGCACT Direction: Forward Position #: 11 Overlap #: 12 Alignment: GVVCAAAGGTCACTMAAKTTTA----- ----------CAHCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif GVVCAAAGGTCACYACAKTKKAGCACT TGGAGCACTGTGACAVCACAGTGG TGGRGVMMWRKGWCACCACAGTGKAGCACT Direction: Forward Position #: 4 Overlap #: 21 Alignment: ---GVVCAAAGGTCACYACAKTKKAGCACT TGGAGCACTGTGACAVCACAGTGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif AGTGCTYCACTGTGGTGWCYMWYYVCKCCA AGTGCTCCACTGTGGTGTCACAGT AGTGCTCCACTGTGGTGTCMCABTVCKCCA Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTGCTYCACTGTGGTGWCYMWYYVCKCCA AGTGCTCCACTGTGGTGTCACAGT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif AGTGCTCCACTGTGGTGTCMCABTVCKCCA CAGTGCTCCACTGTGBT CAGTGCTCCACTGTGGTGTCMCABTVCKCCA Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AGTGCTCCACTGTGGTGTCMCABTVCKCCA CAGTGCTCCACTGTGBT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement CAGTGCTCCACTGTGGTGTCMCABTVCKCCA BTTHAAAAAAYAAAAAAR CAGTGCTCCACTGTGGTGTCMCABTVCTYCAAAAAAYAAAAAAR Direction: Forward Position #: 27 Overlap #: 5 Alignment: CAGTGCTCCACTGTGGTGTCMCABTVCKCCA------------- --------------------------BTTHAAAAAAYAAAAAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Reverse Complement CAGTGCTCCACTGTGGTGTCMCABTVCTYCAAAAAAYAAAAAAR AGTGSWSCACTGTGAMAMCACAGTG CAGTGCTSCACTGTGVYRHCACAGTGCTYCAAAAAAYAAAAAAR Direction: Forward Position #: 2 Overlap #: 25 Alignment: CAGTGCTCCACTGTGGTGTCMCABTVCTYCAAAAAAYAAAAAAR -AGTGSWSCACTGTGAMAMCACAGTG------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 86 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 wwCCAmAGTCmt Original Motif Reverse Complement YGGACTTACG VDGACTRTGGDD BRSWSTKRHBVD Direction: Backward Position #: 1 Overlap #: 10 Alignment: --YGGACTTACG VDGACTRTGGDD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Original Motif Reverse Complement BRSWSTKRHBVD TGACCTTGMBBB TGVMCTTGMBVD Direction: Forward Position #: 1 Overlap #: 12 Alignment: BRSWSTKRHBVD TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Reverse Complement TGVMCTTGMBVD TGMYCTTTGBCCK TGVYCTTKVBHCK Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGVMCTTGMBVD- TGMYCTTTGBCCK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Reverse Complement RGDBVRAAGKBCA GGYGCTGTCCATGGTGCTGAA RGGBHRMWGTCCATGGTGCTGAA Direction: Forward Position #: 3 Overlap #: 11 Alignment: RGDBVRAAGKBCA---------- --GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Reverse Complement RGGBHRMWGTCCATGGTGCTGAA AKGYYCAAAGRTCA ARGBBCAMAGDYCATGGTGCTGAA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -RGGBHRMWGTCCATGGTGCTGAA AKGYYCAAAGRTCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif TTCAGCACCATGMHCTYTGBVCMT VDBHMAGGTCACCCTGACCY TTCAGBACCAKGHCMHYBKGVCCY Direction: Forward Position #: 5 Overlap #: 20 Alignment: TTCAGCACCATGMHCTYTGBVCMT ----VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif TTCAGBACCAKGHCMHYBKGVCCY BTRGGDCARAGGKCA TBYAGGVCMARGDBCHYBKGVCCY Direction: Forward Position #: 2 Overlap #: 15 Alignment: TTCAGBACCAKGHCMHYBKGVCCY -BTRGGDCARAGGKCA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Combined Motif Reverse Complement Original Motif MGGBCRVKHGBHCKTYGBCCTKVA TGAAAATSCTT MGGBCRVKHGBHCKTYGBCCTGAAAATSCTT Direction: Forward Position #: 21 Overlap #: 4 Alignment: MGGBCRVKHGBHCKTYGBCCTKVA------- --------------------TGAAAATSCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Reverse Complement MGGBCRVKHGBHCKTYGBCCTGAAAATSCTT VVTCTTTGTCCT MGGBCDVKTKGHCBTYGBCCTGAAAATSCTT Direction: Forward Position #: 4 Overlap #: 12 Alignment: MGGBCRVKHGBHCKTYGBCCTGAAAATSCTT ---VVTCTTTGTCCT---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Original Motif Reverse Complement MGGBCDVKTKGHCBTYGBCCTGAAAATSCTT GTTGACCTTTGACCTTT MGGBCDSTTGRCCTTTGACCTKWAAATSCTT Direction: Forward Position #: 7 Overlap #: 17 Alignment: MGGBCDVKTKGHCBTYGBCCTGAAAATSCTT ------GTTGACCTTTGACCTTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 87 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 HNF4A Reverse Complement Reverse Complement VVTCTTTGTCCT TGMYCTTTGBCCK TGVYCTTTGBCCT Direction: Forward Position #: 2 Overlap #: 12 Alignment: -VVTCTTTGTCCT TGMYCTTTGBCCK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement TGVYCTTTGBCCT TGRCCTKTGHCCKAB TKVHCYTTKBCCYKAB Direction: Forward Position #: 2 Overlap #: 12 Alignment: TGVYCTTTGBCCT--- -TGRCCTKTGHCCKAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Reverse Complement TKVHCYTTKBCCYKAB BAGGYCABHBTGACCKHV BAGKBCACHBTGDCCBDVB Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---TKVHCYTTKBCCYKAB BAGGYCABHBTGACCKHV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Original Motif BAGKBCACHBTGDCCBDVB VDBHMAGGTCACCCTGACCY VDBHVAGGTCACCBTGACCYDVB Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----BAGKBCACHBTGDCCBDVB VDBHMAGGTCACCCTGACCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Original Motif BBDMGGTCABGGTGACCTVDBHV RAGKGMAGVRRGSRCASAGV RAVDDMRGHVABVVBRVMSHVDBHV Direction: Forward Position #: 3 Overlap #: 18 Alignment: --BBDMGGTCABGGTGACCTVDBHV RAGKGMAGVRRGSRCASAGV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Reverse Complement Reverse Complement VDBHVHSYBKBVVBTVHCMRHHVTK AKGYYCAAAGRTCA VDBHVVBBBBBAMMGRTCARHHVTK Direction: Forward Position #: 6 Overlap #: 14 Alignment: VDBHVHSYBKBVVBTVHCMRHHVTK -----AKGYYCAAAGRTCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Reverse Complement RAVDDMTGAMCYYTBVVBBBVDBHV GTTGACCTTTGACCTTT GTTGACCTHTGACCTTTBVVBBBVDBHV Direction: Forward Position #: 4 Overlap #: 14 Alignment: ---RAVDDMTGAMCYYTBVVBBBVDBHV GTTGACCTTTGACCTTT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Reverse Complement VDBHVVBBBBBAAAGGTCAHAGGTCAAC AGTGSWSCACTGTGAMAMCACAGTG VDBHVVBBBBBAAAGGTCADWGSTSMACTGTGAMAMCACAGTG Direction: Forward Position #: 19 Overlap #: 10 Alignment: VDBHVVBBBBBAAAGGTCAHAGGTCAAC--------------- ------------------AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement CACTGTGRTRTCACAGTYSASCWHTGACCTTTBVVBBBVDBHV CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVTGTCACAGTBSWCCAHTGACCTTTBVVBBBVDBHV Direction: Forward Position #: 2 Overlap #: 23 Alignment: -CACTGTGRTRTCACAGTYSASCWHTGACCTTTBVVBBBVDBHV CCACTGTGVTGTCACAGTGCTCCA-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Original Motif VDBHVVBBBBBAAAGGTCADTGGWSBACTGTGACAVCACAGTGG TTCAGCACCATGGACAGCKCC VDBHVVBBBBBHMAGSWCMDTGGASARCTSYGACAVCACAGTGG Direction: Forward Position #: 11 Overlap #: 21 Alignment: VDBHVVBBBBBAAAGGTCADTGGWSBACTGTGACAVCACAGTGG ----------TTCAGCACCATGGACAGCKCC------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 88 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 TFM2 Original Motif Reverse Complement CTGCTGBDBBDGBD GCAGAKGSAGGABDGHDG GCWGMTGSDGBHBDVHDG Direction: Forward Position #: 2 Overlap #: 14 Alignment: -CTGCTGBDBBDGBD--- GCAGAKGSAGGABDGHDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif CHHVHBHBCDSCARCWGC RAGKGMAGVRRGSRCASAGV CHHVHVDBCWGCRRSDVCASAGV Direction: Forward Position #: 4 Overlap #: 15 Alignment: CHHVHBHBCDSCARCWGC----- ---RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Original Motif CHHVHVDBCWGCRRSDVCASAGV TTCAGCACCATGGACAGCKCC CHHBHCAGCASCADGGACAGMGVC Direction: Forward Position #: 4 Overlap #: 20 Alignment: CHHVHVDBCWGCRRSDVCASAGV- ---TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Reverse Complement GVCYCTGTCCHTGSTGCTGHVHDG MGGTCAGGGTGACCTRDBHV GVCYCWGKYCABGGTGMYSDDDBBV Direction: Forward Position #: 6 Overlap #: 19 Alignment: GVCYCTGTCCHTGSTGCTGHVHDG- -----MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Reverse Complement VBBDHDSKRCACCBTGKYCWGMGVC BAGGYCABHBTGACCKHV BAGGHVAHBBTSACCBHGKYCWGMGVC Direction: Forward Position #: 3 Overlap #: 16 Alignment: --VBBDHDSKRCACCBTGKYCWGMGVC BAGGYCABHBTGACCKHV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Original Motif BAGGHVAHBBTSACCBHGKYCWGMGVC BTRGGDCARAGGKCA BTVRGBBAAAGGTSACCBHGKYCWGMGVC Direction: Forward Position #: 3 Overlap #: 13 Alignment: --BAGGHVAHBBTSACCBHGKYCWGMGVC BTRGGDCARAGGKCA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Original Motif BTVRGBBAAAGGTSACCBHGKYCWGMGVC TGTGGTGTCACAGTGCTCC TGBKVTGTCAMAGKKCWCCBHGKYCWGMGVC Direction: Forward Position #: 3 Overlap #: 17 Alignment: --BTVRGBBAAAGGTSACCBHGKYCWGMGVC TGTGGTGTCACAGTGCTCC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement TGBKVTGTCAMAGKKCWCCBHGKYCWGMGVC CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVTGTCACAGTGCTCCDHGKYCWGMGVC Direction: Forward Position #: 5 Overlap #: 20 Alignment: ----TGBKVTGTCAMAGKKCWCCBHGKYCWGMGVC CCACTGTGVTGTCACAGTGCTCCA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Reverse Complement Reverse Complement GVCYCWGKYCHDGGAGCACTGTGACAVCACAGTGG CKGGDTBDMMCTGG SDSGBTBKHMCTGGAGCACTGTGACAVCACAGTGG Direction: Forward Position #: 1 Overlap #: 14 Alignment: GVCYCWGKYCHDGGAGCACTGTGACAVCACAGTGG CKGGDTBDMMCTGG--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Original Motif Original Motif SDSGBTBKHMCTGGAGCACTGTGACAVCACAGTGG YDRCCASYAGRKGGCRSYV BDVSCWSBAGVKGGMGCHVTGTGACAVCACAGTGG Direction: Forward Position #: 1 Overlap #: 19 Alignment: SDSGBTBKHMCTGGAGCACTGTGACAVCACAGTGG YDRCCASYAGRKGGCRSYV---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 89 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 TFM11 Original Motif Original Motif CACACACACACWCACACA CAMACACACACAYDCACACA CACACACACAYDCACACACA Direction: Backward Position #: 1 Overlap #: 18 Alignment: --CACACACACACWCACACA CAMACACACACAYDCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Original Motif TGTGTGTGDKTGTGTGTGTG KTTTTTTKTTTTTTDAAB KTTKTBTGTKTTTKTRWGTGTG Direction: Forward Position #: 3 Overlap #: 16 Alignment: --TGTGTGTGDKTGTGTGTGTG KTTTTTTKTTTTTTDAAB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement CACACWKAYAAARACAVARAAR MGGTCAGGGTGACCTRDBHV MGGTCASRSTGACMDRRVHAVARAAR Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----CACACWKAYAAARACAVARAAR MGGTCAGGGTGACCTRDBHV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement MGGTCASRSTGACMDRRVHAVARAAR GGAGCACTGTGACACCACA RGRKCACWGTGACAHVAVHAVARAAR Direction: Forward Position #: 1 Overlap #: 19 Alignment: MGGTCASRSTGACMDRRVHAVARAAR GGAGCACTGTGACACCACA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Reverse Complement RGRKCACWGTGACAHVAVHAVARAAR WHAATTAAARAARAAAAAAA RGRKCACDRTKAMAVAAVAAAAAAAR Direction: Forward Position #: 6 Overlap #: 20 Alignment: RGRKCACWGTGACAHVAVHAVARAAR -----WHAATTAAARAARAAAAAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Reverse Complement Reverse Complement KTTTTTTTBTTBTYTYAMDGTGYMCM TGTGTSWGTBTSTG TKTKTBTKDTTBTKTYAMDGTGYMCM Direction: Forward Position #: 1 Overlap #: 14 Alignment: KTTTTTTTBTTBTYTYAMDGTGYMCM TGTGTSWGTBTSTG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Reverse Complement TKTKTBTKDTTBTKTYAMDGTGYMCM TTTRKTTTHTTTTH TKTTTVTTTTTKTKTYAMDGTGYMCM Direction: Forward Position #: 3 Overlap #: 14 Alignment: TKTKTBTKDTTBTKTYAMDGTGYMCM --TTTRKTTTHTTTTH---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 2 Original Motif Reverse Complement TKTTTVTTTTTKTKTYAMDGTGYMCM GTGTGTGTGTGTGT GTGTKTGTKTKTGTKTYAMDGTGYMCM Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TKTTTVTTTTTKTKTYAMDGTGYMCM GTGTGTGTGTGTGT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Original Motif RGRKCACDRTMARACAYAYACAYACAC VHRGGTCABDBTGMCCTB VDRGSWCAVTHWRACMYVYACAYACAC Direction: Forward Position #: 1 Overlap #: 18 Alignment: RGRKCACDRTMARACAYAYACAYACAC VHRGGTCABDBTGMCCTB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif GTGTKTGTKBMRGTMWHAVTGWSCKHV TTCAGCACCATGGACAGCKCC CCKTBARVRYCWHGGWSAGCKGTGTKTGT Direction: Backward Position #: 3 Overlap #: 19 Alignment: GTGTKTGTKBMRGTMWHAVTGWSCKHV-- --------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 90 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 TFM12 Reverse Complement Original Motif GCAGAKGSAGGABDGHDG RAGKGMAGVRRGSRCASAGV RAGBRSAGGVRGSVBDGAGB Direction: Forward Position #: 3 Overlap #: 18 Alignment: --GCAGAKGSAGGABDGHDG RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif BCTCDBBSCKVCCTSKBCTK VDBHMAGGTCACCCTGACCY BCTCDBBCCDGSYYVBBCTGACCY Direction: Forward Position #: 5 Overlap #: 16 Alignment: BCTCDBBSCKVCCTSKBCTK---- ----VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement BCTCDBBCCDGSYYVBBCTGACCY BMSMGCCYMCTKSTGGMHM BCTCDBHSMGSCYCCTBSTGRCCH Direction: Forward Position #: 6 Overlap #: 19 Alignment: BCTCDBBCCDGSYYVBBCTGACCY -----BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif DGGMCASBAGGKGSCRSDBDGAGB TGGAGCACTGTGACAVCACAGTGG TGGAGCACTGKGACAVCASAGKGVRSDBDGAGB Direction: Forward Position #: 10 Overlap #: 15 Alignment: ---------DGGMCASBAGGKGSCRSDBDGAGB TGGAGCACTGTGACAVCACAGTGG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif TGGAGCACTGKGACAVCASAGKGVRSDBDGAGB VHRGGTCABDBTGMCCTB TGGAGCACTRKGWCABBDBRDYSBVSDBDGAGB Direction: Forward Position #: 8 Overlap #: 18 Alignment: TGGAGCACTGKGACAVCASAGKGVRSDBDGAGB -------VHRGGTCABDBTGMCCTB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif TGGAGCACTRKGWCABBDBRDYSBVSDBDGAGB BTRGGDCARAGGKCA TGGAGCASTRGGDCAVVGKDVHSBVSDBDGAGB Direction: Forward Position #: 8 Overlap #: 15 Alignment: TGGAGCACTRKGWCABBDBRDYSBVSDBDGAGB -------BTRGGDCARAGGKCA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement TGGAGCASTRGGDCAVVGKDVHSBVSDBDGAGB AGTGSWSCACTGTGAMAMCACAGTG AGTGGAGCACTGKGHCAVCACAGTGBVSDBDGAGB Direction: Forward Position #: 3 Overlap #: 23 Alignment: --TGGAGCASTRGGDCAVVGKDVHSBVSDBDGAGB AGTGSWSCACTGTGAMAMCACAGTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Reverse Complement AGTGGAGCACTGKGHCAVCACAGTGBVSDBDGAGB HVCDBBDBCAGCAG AGTGGAGCACWGBGVCAGCASAGTGBVSDBDGAGB Direction: Forward Position #: 8 Overlap #: 14 Alignment: AGTGGAGCACTGKGHCAVCACAGTGBVSDBDGAGB -------HVCDBBDBCAGCAG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Reverse Complement Original Motif BCTCDBHSVVCACTSTGCTGBCVCWGTGCTCCACT CCAGYYHVADCCRG CCWGHBHVVDCMVKSTGCTGBCVCWGTGCTCCACT Direction: Forward Position #: 1 Overlap #: 14 Alignment: BCTCDBHSVVCACTSTGCTGBCVCWGTGCTCCACT CCAGYYHVADCCRG--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Original Motif CCWGHBHVVDCMVKSTGCTGBCVCWGTGCTCCACT TTCAGCACCATGGACAGCKCC CCWBTCAGVACCVKGKRCWGBBVCWGTGCTCCACT Direction: Forward Position #: 4 Overlap #: 21 Alignment: CCWGHBHVVDCMVKSTGCTGBCVCWGTGCTCCACT ---TTCAGCACCATGGACAGCKCC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 91 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 TFM13 Original Motif Original Motif KTTTTTTKTTTTTTDAAB TTTTTTTKTTKTTTAATTHW HWTTTTTTTKTTTTTTDAWK Direction: Backward Position #: 3 Overlap #: 18 Alignment: KTTTTTTKTTTTTTDAAB-- TTTTTTTKTTKTTTAATTHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Original Motif Reverse Complement HWTTTTTTTKTTTTTTDAWK TGTGTGWGTGTGTGTGTG TVTKTKTKTKTKTKTKTDAWK Direction: Forward Position #: 2 Overlap #: 17 Alignment: -HWTTTTTTTKTTTTTTDAWK TGTGTGWGTGTGTGTGTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Reverse Complement TVTKTKTKTKTKTKTKTDAWK TGTGTGDKTGTGTGTGTRTG TGTKTGTKTGTGTGTGTRWDK Direction: Forward Position #: 1 Overlap #: 20 Alignment: TVTKTKTKTKTKTKTKTDAWK TGTGTGDKTGTGTGTGTRTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 49 Original Motif Reverse Complement TGTKTGTKTGTGTGTGTRWDK ATTTTTTTTTTTTT ATTTTTTTTTKTKTGTGTRWDK Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TGTKTGTKTGTGTGTGTRWDK ATTTTTTTTTTTTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Original Motif Reverse Complement ATTTTTTTTTKTKTGTGTRWDK TTTRKTTTHTTTTH WTTKKTTTTTTTTTGTGTRWDK Direction: Forward Position #: 1 Overlap #: 14 Alignment: ATTTTTTTTTKTKTGTGTRWDK TTTRKTTTHTTTTH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Original Motif Original Motif WTTKKTTTTTTTTTGTGTRWDK TTTAATGTYTTTWA WTTKTTTWATKTTTKTDWRWDK Direction: Forward Position #: 5 Overlap #: 14 Alignment: WTTKKTTTTTTTTTGTGTRWDK ----TTTAATGTYTTTWA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Reverse Complement Original Motif RHWMWDARAAAYATWAAARAAW CASABACWSACACA CACAHWVARAMACATWAAARAAW Direction: Forward Position #: 2 Overlap #: 13 Alignment: -RHWMWDARAAAYATWAAARAAW CASABACWSACACA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 45 Combined Motif Original Motif Reverse Complement CACAHWVARAMACATWAAARAAW TTAAAAWAGASTTA CACAHWVARAMACWTAAAAWARASTTA Direction: Forward Position #: 14 Overlap #: 10 Alignment: CACAHWVARAMACATWAAARAAW---- -------------TTAAAAWAGASTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Reverse Complement Reverse Complement TAASTMTWTTTTAWGTRTKTVWDTGTG TAGTTTYAKCTTT TAASTTWGTTTTADSTTTKTVWDTGTG Direction: Forward Position #: 6 Overlap #: 13 Alignment: TAASTMTWTTTTAWGTRTKTVWDTGTG -----TAGTTTYAKCTTT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 23 Combined Motif Reverse Complement Reverse Complement CACAHWVARAAASDTAAAACWAASTTA ATYAATGAAWACAT CACAHWVARAAASDTAAAACWAAVTTAATGAAWACAT Direction: Forward Position #: 24 Overlap #: 4 Alignment: CACAHWVARAAASDTAAAACWAASTTA---------- -----------------------ATYAATGAAWACAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 92 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 TFM13 Reverse Complement Original Motif TGTGTGDKTGTGTGTGTRTG TTTTTTTKTTKTTTAATTHW TTKTKTKKTTKTKTRWKTVTG Direction: Forward Position #: 2 Overlap #: 19 Alignment: -TGTGTGDKTGTGTGTGTRTG TTTTTTTKTTKTTTAATTHW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Reverse Complement Original Motif CABAYWMAYAYAARYARARAA CACACACACACWCACACA CAVACACACAYAVACAVARAA Direction: Forward Position #: 1 Overlap #: 18 Alignment: CABAYWMAYAYAARYARARAA CACACACACACWCACACA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Original Motif TTKTBTGTVTKTGTGTGTVTG TGTGGTGTCACAGTGCTCC TKTKBTGTCWBWGTGYKYSTG Direction: Forward Position #: 1 Overlap #: 19 Alignment: TTKTBTGTVTKTGTGTGTVTG TGTGGTGTCACAGTGCTCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Reverse Complement CASMRKCACWBWGACABRARA BTTHAAAAAAYAAAAAAR CASMVTYAMADARACAVAAAAR Direction: Forward Position #: 5 Overlap #: 17 Alignment: CASMRKCACWBWGACABRARA- ----BTTHAAAAAAYAAAAAAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Original Motif CASMVTYAMADARACAVAAAAR CASABACWSACACA CASABDCWVAVACACAVAAAAR Direction: Forward Position #: 1 Overlap #: 14 Alignment: CASMVTYAMADARACAVAAAAR CASABACWSACACA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement KTTTTBTGTGTVTVWGDBTSTG VCTSTGKSCMKBCTRCYCTK KTTTDCTBTGTVYMDBHDBSTVTK Direction: Forward Position #: 5 Overlap #: 18 Alignment: KTTTTBTGTGTVTVWGDBTSTG-- ----VCTSTGKSCMKBCTRCYCTK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Reverse Complement Original Motif RAVASVDDBDRMVACABAGDAAAR HAAAAHAAARMAAA RAVAVAAAVHAAARCAAAGDAAAR Direction: Forward Position #: 5 Overlap #: 14 Alignment: RAVASVDDBDRMVACABAGDAAAR ----HAAAAHAAARMAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Combined Motif Reverse Complement Reverse Complement KTTTDCTTTGKTTTHBTTTBTVTK GTGTGTGTGTGTGT KTTTDSTKTGTKTKTGTKTBTVTK Direction: Forward Position #: 6 Overlap #: 14 Alignment: KTTTDCTTTGKTTTHBTTTBTVTK -----GTGTGTGTGTGTGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif RAVAVAYACAYAYACAYASDAAAR CHHCHBTCCTSCYTCTGC RABHHMYHHVCWSMCWCWSHAAAR Direction: Forward Position #: 3 Overlap #: 18 Alignment: RAVAVAYACAYAYACAYASDAAAR --CHHCHBTCCTSCYTCTGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Reverse Complement RABHHMYHHVCWSMCWCWSHAAAR CTSTGTBKMCTGH RABHHMTVTVYHBMCWSWSHAAAR Direction: Forward Position #: 6 Overlap #: 13 Alignment: RABHHMYHHVCWSMCWCWSHAAAR -----CTSTGTBKMCTGH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 93 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 TGGAGCACTGTGACAcCACAGTGg Original Motif Original Motif RAGKGMAGVRRGSRCASAGV TGGAGCACTGTGACAVCACAGTGG GGGAGBRCWGTGASAVCACAGTTG Direction: Backward Position #: 3 Overlap #: 20 Alignment: --RAGKGMAGVRRGSRCASAGV-- TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement GGGAGBRCWGTGASAVCACAGTTG AGTGSWSCACTGTGAMAMCACAGTG AGKGSAGCACTGTGACAVCACAGTKG Direction: Forward Position #: 3 Overlap #: 23 Alignment: --GGGAGBRCWGTGASAVCACAGTTG AGTGSWSCACTGTGAMAMCACAGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Original Motif AGKGSAGCACTGTGACAVCACAGTKG TTCAGCACCATGGACAGCKCC AGKGSAGCACTGTKHCAGCACMRTGGACAGCKCC Direction: Forward Position #: 14 Overlap #: 13 Alignment: AGKGSAGCACTGTGACAVCACAGTKG-------- -------------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif GGYGCTGTCCAMYGTGCTGHYACAGTGCTSCRCT VDBHMAGGTCACCCTGACCY GVHBCWGKYCAVYSTGMYSHYACAGTGCTSCRCT Direction: Forward Position #: 1 Overlap #: 20 Alignment: GGYGCTGTCCAMYGTGCTGHYACAGTGCTSCRCT VDBHMAGGTCACCCTGACCY-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Original Motif GVHBCWGKYCAVYSTGMYSHYACAGTGCTSCRCT YDRCCASYAGRKGGCRSYV GVHBCTGKCCACYRKGDGGCVVCAGTGCTSCRCT Direction: Forward Position #: 6 Overlap #: 19 Alignment: GVHBCWGKYCAVYSTGMYSHYACAGTGCTSCRCT -----YDRCCASYAGRKGGCRSYV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Reverse Complement GVHBCTGKCCACYRKGDGGCVVCAGTGCTSCRCT BAGGYCABHBTGACCKHV BVGBBCWBBCYRMCMKDVGGCVVCAGTGCTSCRCT Direction: Forward Position #: 2 Overlap #: 17 Alignment: -GVHBCTGKCCACYRKGDGGCVVCAGTGCTSCRCT BAGGYCABHBTGACCKHV----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif AGKGSAGCACTGBVGCCVHRRGYMMGBBWGVBCBB CHHCHBTCCTSCYTCTGC AGKGBHBCACTSYDGCYHCDGBYMMGBBWGVBCBB Direction: Forward Position #: 5 Overlap #: 18 Alignment: AGKGSAGCACTGBVGCCVHRRGYMMGBBWGVBCBB ----CHHCHBTCCTSCYTCTGC------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Original Motif AGKGBHBCACTSYDGCYHCDGBYMMGBBWGVBCBB TGTGGTGTCACAGTGCTCC TGTRGTGTCACASTGCTSCYHCDGBYMMGBBWGVBCBB Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---AGKGBHBCACTSYDGCYHCDGBYMMGBBWGVBCBB TGTGGTGTCACAGTGCTCC------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Original Motif TGTRGTGTCACASTGCTSCYHCDGBYMMGBBWGVBCBB TTTTTTTKTTKTTTAATTHW TTTTTKTDKTKTHWVABTVHTSCYHCDGBYMMGBBWGVBCBB Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----TGTRGTGTCACASTGCTSCYHCDGBYMMGBBWGVBCBB TTTTTTTKTTKTTTAATTHW---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AmTGTGACACCACAGT Combined Motif Original Motif Reverse Complement TTTTTKTDKTKTHWVABTVHTSCYHCDGBYMMGBBWGVBCBB ACTGTGGTGTCACART TTWYTKTGKTGTCACADTVHTSCYHCDGBYMMGBBWGVBCBB Direction: Forward Position #: 3 Overlap #: 16 Alignment: TTTTTKTDKTKTHWVABTVHTSCYHCDGBYMMGBBWGVBCBB --ACTGTGGTGTCACART------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 94 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 TFM11 Reverse Complement Original Motif WHAATTAAARAARAAAAAAA CAMACACACACAYDCACACA AAHAVWYAMAMAMRMAMAMAC Direction: Backward Position #: 2 Overlap #: 19 Alignment: -WHAATTAAARAARAAAAAAA -CAMACACACACAYDCACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Reverse Complement Original Motif GTYTYTYKYTRTYTKWVTDTT KTTTTTTKTTTTTTDAAB KKTTTYTBTTTDTTTAAVTDTT Direction: Forward Position #: 2 Overlap #: 17 Alignment: -GTYTYTYKYTRTYTKWVTDTT KTTTTTTKTTTTTTDAAB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif AAHAVTTAAADAAAVAMAAARR RAGKGMAGVRRGSRCASAGV AAHAVWDDRAARAARRVAMARAGV Direction: Forward Position #: 5 Overlap #: 18 Alignment: AAHAVTTAAADAAAVAMAAARR-- ----RAGKGMAGVRRGSRCASAGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Reverse Complement VCTMTRTBKMTTKTTMDHWVTDTT TGTGTGWGTGTGTGTGTG VCTMTRTKTSTDTKTVTBTRTGTT Direction: Forward Position #: 5 Overlap #: 18 Alignment: VCTMTRTBKMTTKTTMDHWVTDTT ----TGTGTGWGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 49 Combined Motif Original Motif Reverse Complement VCTMTRTKTSTDTKTVTBTRTGTT ATTTTTTTTTTTTT VCTMTRTKTSTDTKTVTBTATTTTTTTTTTTTT Direction: Forward Position #: 20 Overlap #: 5 Alignment: VCTMTRTKTSTDTKTVTBTRTGTT--------- -------------------ATTTTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Reverse Complement Original Motif AAAAAAAAAAAAATABAVAYADASAYAMARAGV HAAAAHAAARMAAA AAAAAAAAAAAAAWAAAMAAADASAYAMARAGV Direction: Forward Position #: 8 Overlap #: 14 Alignment: AAAAAAAAAAAAATABAVAYADASAYAMARAGV -------HAAAAHAAARMAAA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 33 Combined Motif Original Motif Reverse Complement AAAAAAAAAAAAAWAAAMAAADASAYAMARAGV TWAAAKACATTAAA AAWAAAADAMAWWAAAAMAAADASAYAMARAGV Direction: Forward Position #: 3 Overlap #: 14 Alignment: AAAAAAAAAAAAAWAAAMAAADASAYAMARAGV --TWAAAKACATTAAA----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement AAWAAAADAMAWWAAAAMAAADASAYAMARAGV GGAGCACTGTGACACCACA AAWAAAADAMAWWAAAAMAAADASAYAMRGAGCACTGTGACACCACA Direction: Forward Position #: 29 Overlap #: 5 Alignment: AAWAAAADAMAWWAAAAMAAADASAYAMARAGV-------------- ----------------------------GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 45 Original Motif Reverse Complement AAWAAAADAMAWWAAAAMAAADASAYAMRGAGCACTGTGACACCACA TTAAAAWAGASTTA TWAAAAAAGASWTAAAAAMAAADASAYAMRGAGCACTGTGACACCACA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -AAWAAAADAMAWWAAAAMAAADASAYAMRGAGCACTGTGACACCACA TTAAAAWAGASTTA---------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Reverse Complement TGTGGTGTCACAGTGCTCKRTKTSTDTTTRTTTTTAWSTCTTTTTTWA TGRCCTKTGHCCKAB TGDSSTKTSACMGWVCTCKRTKTSTDTTTRTTTTTAWSTCTTTTTTWA Direction: Forward Position #: 1 Overlap #: 15 Alignment: TGTGGTGTCACAGTGCTCKRTKTSTDTTTRTTTTTAWSTCTTTTTTWA TGRCCTKTGHCCKAB--------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-18-2018 15:05:43 Runtime: 848.838 seconds MOTIFSIM is written by Ngoc Tam L. Tran