**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 1 Number of top significant motifs: 10 Number of best matches: 5 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # CisFinder_DM721_Cluster.txt 153 1 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 108 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C108 C125 Original Motif Original Motif RBACWGASAWASVY SKASWYASAGRWASMS ASACAGASAWASMBSK Direction: Backward Position #: 1 Overlap #: 14 Alignment: --RBACWGASAWASVY SKASWYASAGRWASMS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif C021 Original Motif Original Motif ASACAGASAWASMBSK MKAGMVAGAKAGMK AKASASAGATASMKSK Direction: Forward Position #: 1 Overlap #: 14 Alignment: ASACAGASAWASMBSK MKAGMVAGAKAGMK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif C053 Original Motif Original Motif AKASASAGATASMKSK RMACRGAGAAAYCCTGKY RHACAGAGAAABCBBKKY Direction: Forward Position #: 1 Overlap #: 16 Alignment: AKASASAGATASMKSK-- RMACRGAGAAAYCCTGKY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C017 Combined Motif Reverse Complement Reverse Complement MRYVBGBTTTCTCTGTHK SWSTCTCTSWSTCTCWSW MRCWSKSTHTCTCTSTVTSW Direction: Forward Position #: 3 Overlap #: 16 Alignment: MRYVBGBTTTCTCTGTHK-- --SWSTCTCTSWSTCTCWSW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif C070 Original Motif Reverse Complement MRCWSKSTHTCTCTSTVTSW RBSTCTVTCTBTCVC VDSTSTSTBTSTCBSTVTSW Direction: Forward Position #: 1 Overlap #: 15 Alignment: MRCWSKSTHTCTCTSTVTSW RBSTCTVTCTBTCVC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 25 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C025 C078 Original Motif Original Motif KMGAKAGAGMGAKM YRGAYAGAGRGAYR KMGAKAGAGMGAKM Direction: Backward Position #: 1 Overlap #: 14 Alignment: KMGAKAGAGMGAKM YRGAYAGAGRGAYR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C012 Combined Motif Reverse Complement Reverse Complement YRTCYCTCTRTCYR YRTCTCTCTCTRYCTCTRR YRTVTCTCTMTCTRYCTCTRR Direction: Forward Position #: 3 Overlap #: 12 Alignment: YRTCYCTCTRTCYR------- --YRTCTCTCTCTRYCTCTRR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C011 Combined Motif Original Motif Reverse Complement YRTVTCTCTMTCTRYCTCTRR RRTCTCTCTCRRTCTCRR YRDVTCTCTCTCDRTCTCDRR Direction: Forward Position #: 3 Overlap #: 18 Alignment: YRTVTCTCTMTCTRYCTCTRR --RRTCTCTCTCRRTCTCRR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif C026 Original Motif Original Motif YRDVTCTCTCTCDRTCTCDRR KMGAGAKMKMGAGAKM KMDRKMTCKMKMGAKCTCDRR Direction: Forward Position #: 1 Overlap #: 16 Alignment: YRDVTCTCTCTCDRTCTCDRR KMGAGAKMKMGAGAKM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C070 Combined Motif Original Motif Reverse Complement KMDRKMTCKMKMGAKCTCDRR RBSTCTVTCTBTCVC KVBVKCTCTCKVBMBCTCDRR Direction: Forward Position #: 2 Overlap #: 15 Alignment: KMDRKMTCKMKMGAKCTCDRR -RBSTCTVTCTBTCVC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 70 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C070 C017 Original Motif Original Motif GVGABAGAVAGASVK WSWGAGASWSAGAGASWS WSWGRGASASAGAGASDB Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---GVGABAGAVAGASVK WSWGAGASWSAGAGASWS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C012 Combined Motif Reverse Complement Reverse Complement BDSTCTCTSTSTCKCWSW YRTCTCTCTCTRYCTCTRR BDSTVTCTCTCTCTVTCTCTRR Direction: Forward Position #: 4 Overlap #: 15 Alignment: BDSTCTCTSTSTCKCWSW---- ---YRTCTCTCTCTRYCTCTRR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C028 Combined Motif Original Motif Original Motif BDSTVTCTCTCTCTVTCTCTRR BVGASSCASAGVSABV BVSWVBCWSWSBCWVHCTCTRR Direction: Forward Position #: 1 Overlap #: 16 Alignment: BDSTVTCTCTCTCTVTCTCTRR BVGASSCASAGVSABV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C011 Combined Motif Reverse Complement Reverse Complement MKAGAGHVWGVSWSWGVVWSVB RRTCTCTCTCRRTCTCRR MKAGRRTCTSDCTSDRDCTCVV Direction: Forward Position #: 5 Overlap #: 18 Alignment: MKAGAGHVWGVSWSWGVVWSVB ----RRTCTCTCTCRRTCTCRR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C055 Combined Motif Reverse Complement Reverse Complement VVGAGDMDSAGDSAGAMKCTRR RYCTCTRRRRCTCTRR VVGARHCTSWRRVRSDCTVDRR Direction: Forward Position #: 5 Overlap #: 16 Alignment: VVGAGDMDSAGDSAGAMKCTRR ----RYCTCTRRRRCTCTRR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 78 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C078 C025 Original Motif Original Motif YRGAYAGAGRGAYR KMGAKAGAGMGAKM KMGAKAGAGMGAKM Direction: Backward Position #: 1 Overlap #: 14 Alignment: YRGAYAGAGRGAYR KMGAKAGAGMGAKM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C012 Combined Motif Reverse Complement Reverse Complement YRTCYCTCTRTCYR YRTCTCTCTCTRYCTCTRR YRTVTCTCTMTCTRYCTCTRR Direction: Forward Position #: 3 Overlap #: 12 Alignment: YRTCYCTCTRTCYR------- --YRTCTCTCTCTRYCTCTRR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif C070 Reverse Complement Original Motif MKAGAGMKAGARAGAGAVAKM GVGABAGAVAGASVK GVGAGAGABAGAVAGAGAVAKM Direction: Forward Position #: 2 Overlap #: 14 Alignment: -MKAGAGMKAGARAGAGAVAKM GVGABAGAVAGASVK------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C017 Combined Motif Reverse Complement Reverse Complement YRTVTCTCTVTCTBTCTCTCVC SWSTCTCTSWSTCTCWSW YRTSTCTCTCTCTSTCTCTCDC Direction: Forward Position #: 4 Overlap #: 18 Alignment: YRTVTCTCTVTCTBTCTCTCVC ---SWSTCTCTSWSTCTCWSW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif C011 Reverse Complement Original Motif GDGAGAGASAGAGAGAGASAKM KMGAGAKMGAGAGAGAKM KHGAGAGAGAGAGAGAKMSAKM Direction: Forward Position #: 1 Overlap #: 18 Alignment: GDGAGAGASAGAGAGAGASAKM KMGAGAKMGAGAGAGAKM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 23 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C023 C004 Reverse Complement Reverse Complement SSGGSGDBGSGGSS SSSSSSGSGGSSSSGGSSSSSGSSSSS SSSGGSGGSGSGGSSSSSSSSGSGGSS Direction: Backward Position #: 2 Overlap #: 14 Alignment: ------------SSGGSGDBGSGGSS- SSSSSSGSGGSSSSGGSSSSSGSSSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C104 Combined Motif Reverse Complement Original Motif SSCCSCSSSSSSSSCCSCSCCSCCSSS SSCCYCCCCDCCSS SSCCBCCCCVSCSSCCSCSCCSCCSSS Direction: Forward Position #: 1 Overlap #: 14 Alignment: SSCCSCSSSSSSSSCCSCSCCSCCSSS SSCCYCCCCDCCSS------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C054 Combined Motif Reverse Complement Reverse Complement SSSGGSGGSGSGGSSGSVGGGGBGGSS SSGGGGGGGHGGSS SSSGSSGGGGGGGVGGSSGGGGBGGSS Direction: Forward Position #: 5 Overlap #: 14 Alignment: SSSGGSGGSGSGGSSGSVGGGGBGGSS ----SSGGGGGGGHGGSS--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C003 Combined Motif Original Motif Reverse Complement SSSGSSGGGGGGGVGGSSGGGGBGGSS GSSGGGGGSSGGGGGGKGGVMGGSHGKGSC SSSGSGSSGGGGGSSGGGGGGGGGGVGGSHGKGSC Direction: Forward Position #: 6 Overlap #: 22 Alignment: SSSGSSGGGGGGGVGGSSGGGGBGGSS-------- -----GSSGGGGGSSGGGGGGKGGVMGGSHGKGSC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C008 Combined Motif Reverse Complement Original Motif GSCYCHSCCVCCCCCCCCCCSSCCCCCSSCSCSSS SSCCSSCCCCSSCCSS GSCYCBSCCSSCCCCSCCCCSSCCCCCSSCSCSSS Direction: Forward Position #: 6 Overlap #: 16 Alignment: GSCYCHSCCVCCCCCCCCCCSSCCCCCSSCSCSSS -----SSCCSSCCCCSSCCSS-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 104 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C104 C023 Reverse Complement Reverse Complement SSGGHGGGGKGGSS SSGGSGDBGSGGSS SSGGSGGGGGGGSS Direction: Forward Position #: 1 Overlap #: 14 Alignment: SSGGHGGGGKGGSS SSGGSGDBGSGGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C008 Combined Motif Reverse Complement Original Motif SSCCCCCCCSCCSS SSCCSSCCCCSSCCSS SSCSCCCCCCCCSSCCSS Direction: Forward Position #: 3 Overlap #: 12 Alignment: SSCCCCCCCSCCSS---- --SSCCSSCCCCSSCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif C054 Original Motif Original Motif SSCSCCCCCCCCSSCCSS SSCCDCCCCCCCSS SSCCBCCCCCCCSSCCSS Direction: Forward Position #: 1 Overlap #: 14 Alignment: SSCSCCCCCCCCSSCCSS SSCCDCCCCCCCSS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif C004 Reverse Complement Reverse Complement SSGGSSGGGGGGGBGGSS SSSSSSGSGGSSSSGGSSSSSGSSSSS SSSSSSSGGSSGGSGGGGSSGSSSSSS Direction: Forward Position #: 6 Overlap #: 18 Alignment: -----SSGGSSGGGGGGGBGGSS---- SSSSSSGSGGSSSSGGSSSSSGSSSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif C037 Reverse Complement Original Motif SSSSSSCSSCCCCSCCSSCCSSSSSSS SVCCGBCMCCSYCMCCVB SSCCSSCCCCSCCMCCSSSCCSSSSSSS Direction: Forward Position #: 2 Overlap #: 17 Alignment: -SSSSSSCSSCCCCSCCSSCCSSSSSSS SVCCGBCMCCSYCMCCVB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 18 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C018 C024 Reverse Complement Reverse Complement THTTTTTTTMYTT THTTDMWTTTTWKMTTDA ATMTTTTTTTMTTDTHTT Direction: Backward Position #: 2 Overlap #: 13 Alignment: ----THTTTTTTTMYTT- THTTDMWTTTTWKMTTDA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif C033 Original Motif Reverse Complement ATMTTTTTTTMTTDTHTT WTTTWKYTTTMWTTWW WTHTTTYTTTMTTTHWTT Direction: Forward Position #: 1 Overlap #: 16 Alignment: ATMTTTTTTTMTTDTHTT WTTTWKYTTTMWTTWW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C010 Combined Motif Original Motif Reverse Complement WTHTTTYTTTMTTTHWTT WWTTTTTTTTTTWWTTTTWWW WTHWTTTTTTHTTTTWTTTTTWWW Direction: Forward Position #: 4 Overlap #: 15 Alignment: WTHTTTYTTTMTTTHWTT------ ---WWTTTTTTTTTTWWTTTTWWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C131 Combined Motif Reverse Complement Original Motif WWWAAAAAWAAAAHAAAAAAWHAW WWAADAARVHAAWW WWWAAWAAWAAAAHAAAAAAWHAW Direction: Forward Position #: 5 Overlap #: 14 Alignment: WWWAAAAAWAAAAHAAAAAAWHAW ----WWAADAARVHAAWW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif C030 Original Motif Original Motif WWWAAWAAWAAAAHAAAAAAWHAW WYAAAAAMAAAAAAAAWAM WWAAAAAAAAAAAAAAWAAAWHAW Direction: Forward Position #: 1 Overlap #: 19 Alignment: WWWAAWAAWAAAAHAAAAAAWHAW WYAAAAAMAAAAAAAAWAM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 65 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C065 C007 Reverse Complement Reverse Complement YSTRGAWCTCASR SAGGCTGYCCTVGAACTCASAAY SAGGCTGYCCTRGAACTCASRAY Direction: Forward Position #: 9 Overlap #: 13 Alignment: --------YSTRGAWCTCASR-- SAGGCTGYCCTVGAACTCASAAY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif C040 Original Motif Reverse Complement SAGGCTGYCCTRGAACTCASRAY KCTGMSKTYGAMSTCASM KCTGAGGYTGHMCTCRRMCTCASRAY Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---SAGGCTGYCCTRGAACTCASRAY KCTGMSKTYGAMSTCASM-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif C013 Reverse Complement Reverse Complement KTKSTGAGYKKGAGRHCAMCCTCAGY YCCTGGTCTACADAGTGAGTTCCAGVW YCCTGGTYYWSAGWGTGAGKTCMASSWCAGY Direction: Forward Position #: 6 Overlap #: 22 Alignment: -----KTKSTGAGYKKGAGRHCAMCCTCAGY YCCTGGTCTACADAGTGAGTTCCAGVW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif C036 Original Motif Original Motif YCCTGGTYYWSAGWGTGAGKTCMASSWCAGY MKAGMKMGAGAKMKAGMK MKABCBHGRBHKHBAGMKTGAGKTCMASSWCAGY Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---YCCTGGTYYWSAGWGTGAGKTCMASSWCAGY MKAGMKMGAGAKMKAGMK---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C132 Combined Motif Original Motif Original Motif MKABCBHGRBHKHBAGMKTGAGKTCMASSWCAGY WCAGRGWGAGAWCYAGGW MKABCBHSAGVKHGAGADYBAGGTCMASSWCAGY Direction: Forward Position #: 7 Overlap #: 18 Alignment: MKABCBHGRBHKHBAGMKTGAGKTCMASSWCAGY ------WCAGRGWGAGAWCYAGGW---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 84 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C084 C076 Original Motif Original Motif SCTGCMKCTGCVB ASCTRCCTCYBCSB SCTGCCKCYGCSBA Direction: Backward Position #: 1 Overlap #: 13 Alignment: -SCTGCMKCTGCVB ASCTRCCTCYBCSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif C075 Original Motif Reverse Complement SCTGCCKCYGCSBA YGSCTGCSYCTGCCY YGSCTGCCTCTGCCHA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --SCTGCCKCYGCSBA YGSCTGCSYCTGCCY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif C118 Reverse Complement Reverse Complement THGGCAGAGGCAGSCK GRGGCASWSGCAGYC KVGGCAGASGCAGBCK Direction: Forward Position #: 1 Overlap #: 15 Alignment: THGGCAGAGGCAGSCK GRGGCASWSGCAGYC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif C106 Reverse Complement Original Motif YGBCTGCSTCTGCCBY MSGCAGWGGCASK MSGCWGHGDCWGBCBY Direction: Forward Position #: 1 Overlap #: 13 Alignment: YGBCTGCSTCTGCCBY MSGCAGWGGCASK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif C060 Reverse Complement Original Motif KVGBCWGHCDCWGCSR SMGGCAKMGGCAKS SMGGCAGMSGCAGCSR Direction: Forward Position #: 1 Overlap #: 14 Alignment: KVGBCWGHCDCWGCSR SMGGCAKMGGCAKS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 54 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C054 C003 Reverse Complement Reverse Complement SSGGGGGGGHGGSS GSSGGGGGSSGGGGGGKGGVMGGSHGKGSC GSGGGGGGGVGGGGGGKGGVMGGSHGKGSC Direction: Forward Position #: 1 Overlap #: 14 Alignment: SSGGGGGGGHGGSS---------------- GSSGGGGGSSGGGGGGKGGVMGGSHGKGSC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C023 Combined Motif Reverse Complement Original Motif GSCYCHSCCYVCCYCCCCCCVCCCCCCCSC SSCCSCBHCSCCSS GSCYCHSCCYSCCHCSCCCCVCCCCCCCSC Direction: Forward Position #: 7 Overlap #: 14 Alignment: GSCYCHSCCYVCCYCCCCCCVCCCCCCCSC ------SSCCSCBHCSCCSS---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C008 Combined Motif Original Motif Original Motif GSCYCHSCCYSCCHCSCCCCVCCCCCCCSC SSCCSSCCCCSSCCSS GSCYCHSSCCSCCCCCSCCCSSCCCCCCSC Direction: Forward Position #: 7 Overlap #: 16 Alignment: GSCYCHSCCYSCCHCSCCCCVCCCCCCCSC ------SSCCSSCCCCSSCCSS-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C104 Combined Motif Reverse Complement Reverse Complement GSGGGGGGSSGGGSGGGGGSGGSSHGKGSC SSGGHGGGGKGGSS GSGGGGGGGVGGGGGGGSSSGGSSHGKGSC Direction: Forward Position #: 6 Overlap #: 14 Alignment: GSGGGGGGSSGGGSGGGGGSGGSSHGKGSC -----SSGGHGGGGKGGSS----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- C004 Combined Motif Reverse Complement Original Motif GSCYCHSSCCSSSCCCCCCCVCCCCCCCSC SSSSSCSSSSSCCSSSSCCSCSSSSSS GSCYCHSSCCSSSCCCCCCSSCCCCCCSSSSSS Direction: Forward Position #: 7 Overlap #: 24 Alignment: GSCYCHSSCCSSSCCCCCCCVCCCCCCCSC--- ------SSSSSCSSSSSCCSSSSCCSCSSSSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-18-2018 16:00:12 Runtime: 1179.17 seconds MOTIFSIM is written by Ngoc Tam L. 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