**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # PScanChIP_DM05.txt 16 1 RSAT_peak-motifs_DM05.txt 17 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** *************************************************************** Combined Motifs for Top Best Match Motif ID 1 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A PPARGRXRA Original Motif Original Motif RGGBCAAAGKYCA BTRGGDCARAGGKCA BTRGGBCAAAGGTCA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --RGGBCAAAGKYCA BTRGGDCARAGGKCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif TGACCTTTGBCCKAB TGAMCTTTGMMCYT TGACCTTTGVMCBHB Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGACCTTTGBCCKAB TGAMCTTTGMMCYT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Reverse Complement Original Motif BHVGRVCAAAGGTCA AAAGGTCAAAGGTCAAC VAAGGTCAAAGGTCAAC Direction: Forward Position #: 1 Overlap #: 15 Alignment: BHVGRVCAAAGGTCA-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement GTTGACCTTTGACCTTB AGTGSWSCACTGTGAMAMCACAGTG AGTGBTGMMCTKTGACMHYACAGTG Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---GTTGACCTTTGACCTTB----- AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif CACTGTKHRGTCAYAGYRCAVCACT TGGAGCACTGTGACAVCACAGTGG TGGAGCACTGTGAVRBCACAGTGSAVCACT Direction: Forward Position #: 6 Overlap #: 19 Alignment: -----CACTGTKHRGTCAYAGYRCAVCACT TGGAGCACTGTGACAVCACAGTGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Reverse Complement TGGAGCACTGTGAVRBCACAGTGSAVCACT BAGGYCABHBTGACCKHV TRGRBCACTGTGACVBCACAGTGSAVCACT Direction: Forward Position #: 1 Overlap #: 18 Alignment: TGGAGCACTGTGAVRBCACAGTGSAVCACT BAGGYCABHBTGACCKHV------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement TRGRBCACTGTGACVBCACAGTGSAVCACT GGAGCACTGTGACACCACA GKAGVACWSTGWSACCDCACAGTGSAVCACT Direction: Forward Position #: 2 Overlap #: 18 Alignment: -TRGRBCACTGTGACVBCACAGTGSAVCACT GGAGCACTGTGACACCACA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif GKAGVACWSTGWSACCDCACAGTGSAVCACT VDBHMAGGTCACCCTGACCY GKAGVACDBYVAGRBCACHCWGHSCWVCACT Direction: Forward Position #: 7 Overlap #: 20 Alignment: GKAGVACWSTGWSACCDCACAGTGSAVCACT ------VDBHMAGGTCACCCTGACCY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif GKAGVACDBYVAGRBCACHCWGHSCWVCACT TTCAGCACCATGGACAGCKCC TTCAGBASCAHGGASAGVBCMCHCWGHSCWVCACT Direction: Forward Position #: 5 Overlap #: 17 Alignment: ----GKAGVACDBYVAGRBCACHCWGHSCWVCACT TTCAGCACCATGGACAGCKCC-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif AGTGBWGSHCWGHGRGVVCTSTCCDTGSTBCTGAA AGTGCTCCACTGTGGTGTCACAGT AGTGCTSCACTGTGGKGTCWSWSYDTGSTBCTGAA Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTGBWGSHCWGHGRGVVCTSTCCDTGSTBCTGAA AGTGCTCCACTGTGGTGTCACAGT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Reverse Complement Reverse Complement TTCAGBASCAHMSWSWGACRCCACAGTGSAGCACT BMSMGCCYMCTKSTGGMHM BHCAGCMCCCTDSTGDVHMRCCACAGTGSAGCACT Direction: Forward Position #: 1 Overlap #: 19 Alignment: TTCAGBASCAHMSWSWGACRCCACAGTGSAGCACT BMSMGCCYMCTKSTGGMHM---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 2 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 NR1H2RXRA Original Motif Reverse Complement TGAMCTTTGMMCYT GTTGACCTTTGACCTTT TTGACCTTTGACCTTGT Direction: Backward Position #: 2 Overlap #: 14 Alignment: --TGAMCTTTGMMCYT- GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif ACAAGGTCAAAGGTCAA BTRGGDCARAGGKCA ASDRGGKCAAAGGTCAA Direction: Forward Position #: 2 Overlap #: 15 Alignment: ACAAGGTCAAAGGTCAA -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement ASDRGGKCAAAGGTCAA AGTGSWSCACTGTGAMAMCACAGTG ASTGGRBCAMWGKKMMAMCACAGTG Direction: Forward Position #: 1 Overlap #: 17 Alignment: ASDRGGKCAAAGGTCAA-------- AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement ASTGGRBCAMWGKKMMAMCACAGTG BAGGYCABHBTGACCKHV ASBRGGBCAHHGTGAMMBYACAGTG Direction: Forward Position #: 3 Overlap #: 18 Alignment: ASTGGRBCAMWGKKMMAMCACAGTG --BAGGYCABHBTGACCKHV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif CACTGTKVRRTCACHDTGVCCKVST TTCAGCACCATGGACAGCKCC CCKTBAGVWCMHHGKRCASBDCACTGT Direction: Backward Position #: 3 Overlap #: 19 Alignment: CACTGTKVRRTCACHDTGVCCKVST-- ------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 3 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement VDBHMAGGTCACCCTGACCY CCACTGTGVTGTCACAGTGCTCCA ACTGTVRKGTCACMSTGMYCYCCA Direction: Backward Position #: 2 Overlap #: 20 Alignment: ---VDBHMAGGTCACCCTGACCY- CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Reverse Complement ACTGTVRKGTCACMSTGMYCYCCA AGTGSWSCACTGTGAMAMCACAGTG ACTRBKGKRKCACWGTGMCMHCMMAGTG Direction: Forward Position #: 4 Overlap #: 21 Alignment: ACTGTVRKGTCACMSTGMYCYCCA---- ---AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Original Motif ACTRBKGKRKCACWGTGMCMHCMMAGTG TGTGGTGTCACAGTGCTCC WVTGGTGTVDCASTGYKMCMHCMMAGTG Direction: Forward Position #: 1 Overlap #: 19 Alignment: ACTRBKGKRKCACWGTGMCMHCMMAGTG TGTGGTGTCACAGTGCTCC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Reverse Complement CACTYYGDRGRYMCASTGDVACACCAVW BMSMGCCYMCTKSTGGMHM CACTYYGVGVGCCCMCTGBDRSMBMAVW Direction: Forward Position #: 7 Overlap #: 19 Alignment: CACTYYGDRGRYMCASTGDVACACCAVW ------BMSMGCCYMCTKSTGGMHM--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement CACTYYGVGVGCCCMCTGBDRSMBMAVW BAGGYCABHBTGACCKHV CACTYYBAGGDCMCHSTGVCVBHBMAVW Direction: Forward Position #: 7 Overlap #: 18 Alignment: CACTYYGVGVGCCCMCTGBDRSMBMAVW ------BAGGYCABHBTGACCKHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Original Motif CACTYYBAGGDCMCHSTGVCVBHBMAVW TTCAGCACCATGGACAGCKCC CACTYYBMRGBMCCHBKGACAGHDCMVW Direction: Forward Position #: 6 Overlap #: 21 Alignment: CACTYYBAGGDCMCHSTGVCVBHBMAVW -----TTCAGCACCATGGACAGCKCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AmTGTGACACCACAGT Combined Motif Original Motif Reverse Complement CACTYYBMRGBMCCHBKGACAGHDCMVW ACTGTGGTGTCACART CACTBTGVWGTCMCABTGACAGHDCMVW Direction: Forward Position #: 2 Overlap #: 16 Alignment: CACTYYBMRGBMCCHBKGACAGHDCMVW -ACTGTGGTGTCACART----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AgTGCTCCACTGTGgTGTCACAgT Combined Motif Original Motif Reverse Complement CACTBTGVWGTCMCABTGACAGHDCMVW ACTGTGACACCACAGTGGAGCACT CACTGTGAHRYCACAGTGRMRSAVHMVW Direction: Forward Position #: 2 Overlap #: 24 Alignment: CACTBTGVWGTCMCABTGACAGHDCMVW -ACTGTGACACCACAGTGGAGCACT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Reverse Complement WVYHVTSMYMCACTGTGKKDTCACAGTG TGRCCTKTGHCCKAB TDVCCKTTVYCCDVBGTGKKDTCACAGTG Direction: Forward Position #: 2 Overlap #: 14 Alignment: -WVYHVTSMYMCACTGTGKKDTCACAGTG TGRCCTKTGHCCKAB-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Reverse Complement TDVCCKTTVYCCDVBGTGKKDTCACAGTG GTTGACCTTTGACCTTT GTTGACCTTTGACCTHTGTGKKDTCACAGTG Direction: Forward Position #: 3 Overlap #: 15 Alignment: --TDVCCKTTVYCCDVBGTGKKDTCACAGTG GTTGACCTTTGACCTTT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 4 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb NR2F1 Reverse Complement Original Motif TGACCTTGMBBB TGAMCTTTGMMCYT WSMYYTKRMCHBTG Direction: Backward Position #: 1 Overlap #: 12 Alignment: --TGACCTTGMBBB TGAMCTTTGMMCYT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Reverse Complement WSMYYTKRMCHBTG TGRCCTKTGHCCKAB TGMCCTKDVCCYTRB Direction: Forward Position #: 1 Overlap #: 14 Alignment: WSMYYTKRMCHBTG- TGRCCTKTGHCCKAB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Reverse Complement Original Motif BMAKGGVDRAGGYCA RGGBCAAAGKYCA BMRGGBCAAAGKYCA Direction: Forward Position #: 3 Overlap #: 13 Alignment: BMAKGGVDRAGGYCA --RGGBCAAAGKYCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Original Motif BMRGGBCAAAGKYCA AAAGGTCAAAGGTCAAC VMAGGTCAAAGGTCAAC Direction: Forward Position #: 1 Overlap #: 15 Alignment: BMRGGBCAAAGKYCA-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement VMAGGTCAAAGGTCAAC MGGTCAGGGTGACCTRDBHV VMAVGKYMARGGTSAMCTRDBHV Direction: Forward Position #: 4 Overlap #: 14 Alignment: VMAGGTCAAAGGTCAAC------ ---MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Reverse Complement VDBHMAGRTSACCKTRKYCVTYB BAGGYCABHBTGACCKHV BVGGHCABVBBRMCYTDDYCVTYB Direction: Forward Position #: 2 Overlap #: 17 Alignment: -VDBHMAGRTSACCKTRKYCVTYB BAGGYCABHBTGACCKHV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif BVGGHCABVBBRMCYTDDYCVTYB TTCAGCACCATGGACAGCKCC TBCRGBMMCVTGGACAKVDCCVTYB Direction: Forward Position #: 2 Overlap #: 20 Alignment: -BVGGHCABVBBRMCYTDDYCVTYB TTCAGCACCATGGACAGCKCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement TBCRGBMMCVTGGACAKVDCCVTYB GGAGCACTGTGACACCACA TBCRGBMMCVTGGACRGAGCMCTKTGACACCACA Direction: Forward Position #: 16 Overlap #: 10 Alignment: TBCRGBMMCVTGGACAKVDCCVTYB--------- ---------------GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Original Motif TBCRGBMMCVTGGACRGAGCMCTKTGACACCACA TGGAGCACTGTGACAVCACAGTGG TBCWGSASCAYKGWSASABCACWGTGRCACCACA Direction: Forward Position #: 4 Overlap #: 24 Alignment: TBCRGBMMCVTGGACRGAGCMCTKTGACACCACA ---TGGAGCACTGTGACAVCACAGTGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif TGTGGTGKCACWGTGBTSTSWCRKTGSTSCWGVA CACTGTGRTRTCACAGTGSWSCACT CACTGTGGTGTCACAGTGSTSYVHYRKTGSTSCWGVA Direction: Forward Position #: 4 Overlap #: 22 Alignment: ---TGTGGTGKCACWGTGBTSTSWCRKTGSTSCWGVA CACTGTGRTRTCACAGTGSWSCACT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 5 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ZEB1 CTCF Reverse Complement Original Motif HAGGTG YDRCCASYAGRKGGCRSYV YDRCCASYAGGTGGCRSYV Direction: Forward Position #: 8 Overlap #: 6 Alignment: -------HAGGTG------ YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RORA_1 Combined Motif Original Motif Reverse Complement YDRCCASYAGGTGGCRSYV TGACCTDVWT YDRCCASYAGGTGRCSBHVWT Direction: Forward Position #: 12 Overlap #: 8 Alignment: YDRCCASYAGGTGGCRSYV-- -----------TGACCTDVWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif YDRCCASYAGGTGRCSBHVWT TTCAGCACCATGGACAGCKCC TTCAGCACCAYGGMCAGCASSTGRCSBHVWT Direction: Forward Position #: 11 Overlap #: 11 Alignment: ----------YDRCCASYAGGTGRCSBHVWT TTCAGCACCATGGACAGCKCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Reverse Complement Original Motif AWVHVSGKCASSTGCTGRCCMTGGTGCTGAA VBBYCAAGGTCA VBDTCAAGGTCASSTGCTGRCCMTGGTGCTGAA Direction: Forward Position #: 3 Overlap #: 10 Alignment: --AWVHVSGKCASSTGCTGRCCMTGGTGCTGAA VBBYCAAGGTCA--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Original Motif VBDTCAAGGTCASSTGCTGRCCMTGGTGCTGAA AAAGGTCAAAGGTCAAC AAAGGTCAAAGGTCAVCTGCTGRCCMTGGTGCTGAA Direction: Forward Position #: 4 Overlap #: 14 Alignment: ---VBDTCAAGGTCASSTGCTGRCCMTGGTGCTGAA AAAGGTCAAAGGTCAAC------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Original Motif AAAGGTCAAAGGTCAVCTGCTGRCCMTGGTGCTGAA BTRGGDCARAGGKCA BHRRGGBMAARGGYMAVCTGCTGRCCMTGGTGCTGAA Direction: Forward Position #: 2 Overlap #: 14 Alignment: -AAAGGTCAAAGGTCAVCTGCTGRCCMTGGTGCTGAA BTRGGDCARAGGKCA---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR4A2 Combined Motif Original Motif Original Motif BHRRGGBMAARGGYMAVCTGCTGRCCMTGGTGCTGAA AAGGTCAC BAAGGBCAMARGGYMAVCTGCTGRCCMTGGTGCTGAA Direction: Forward Position #: 2 Overlap #: 8 Alignment: BHRRGGBMAARGGYMAVCTGCTGRCCMTGGTGCTGAA -AAGGTCAC---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Original Motif BAAGGBCAMARGGYMAVCTGCTGRCCMTGGTGCTGAA VDBHMAGGTCACCCTGACCY VDBBHAGGTCAVMVKGHCMHCTGCTGRCCMTGGTGCTGAA Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---BAAGGBCAMARGGYMAVCTGCTGRCCMTGGTGCTGAA VDBHMAGGTCACCCTGACCY-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Original Motif VDBBHAGGTCAVMVKGHCMHCTGCTGRCCMTGGTGCTGAA HSCACGTGGC VBCACRKGKCAVMVKGHCMHCTGCTGRCCMTGGTGCTGAA Direction: Forward Position #: 1 Overlap #: 10 Alignment: VDBBHAGGTCAVMVKGHCMHCTGCTGRCCMTGGTGCTGAA HSCACGTGGC------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Original Motif VBCACRKGKCAVMVKGHCMHCTGCTGRCCMTGGTGCTGAA VGCACGTGGH VVCACGTGGCAVMVKGHCMHCTGCTGRCCMTGGTGCTGAA Direction: Forward Position #: 1 Overlap #: 10 Alignment: VBCACRKGKCAVMVKGHCMHCTGCTGRCCMTGGTGCTGAA VGCACGTGGH------------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 6 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Myc Reverse Complement Reverse Complement GCCACGTGSD DCCACGTGCV GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSD DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Reverse Complement Reverse Complement VSCACGTGGC SBCGCGGGGSB VSCRCGKGGVB Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCACGTGGC- SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Reverse Complement Original Motif BVCCYCGMGSV YDRCCASYAGRKGGCRSYV YBVCCHCGAGVKGGCRSYV Direction: Forward Position #: 2 Overlap #: 11 Alignment: -BVCCYCGMGSV------- YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCCCCGCSssk Original Motif Reverse Complement YBVCCHCGAGVKGGCRSYV BBSGGCGGGGBS YBSSSCSGRGVBGGCRSYV Direction: Forward Position #: 1 Overlap #: 12 Alignment: YBVCCHCGAGVKGGCRSYV BBSGGCGGGGBS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Original Motif BMSMGCCBVCMCSGSSSBM CACTGTGRTRTCACAGTGSWSCACT TCACAGTGSWSCACTBASYGYSVBSBMSMGCCBV Direction: Backward Position #: 16 Overlap #: 10 Alignment: BMSMGCCBVCMCSGSSSBM--------------- ---------CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 7 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif GGYGCTGTCCATGGTGCTGAA AGTGCTCCACTGTGGTGTCACAGT ACAGTRGTGCTSYMCWKKGKKSTSGG Direction: Backward Position #: 6 Overlap #: 19 Alignment: GGYGCTGTCCATGGTGCTGAA----- --AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif CCSASRRCRYWGRKSAGCACKACTGT VDBHMAGGTCACCCTGACCY CCSASVDCVHAGGKCAGCMYGACYKT Direction: Forward Position #: 6 Overlap #: 20 Alignment: CCSASRRCRYWGRKSAGCACKACTGT -----VDBHMAGGTCACCCTGACCY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Reverse Complement Original Motif AYMGTCMRGCTGRCCTDBGDBSTSGG CAGTGCTCCACTGTGBT AYMGYMVDGCTSMMCTGTGBTSTSGG Direction: Forward Position #: 5 Overlap #: 17 Alignment: AYMGTCMRGCTGRCCTDBGDBSTSGG ----CAGTGCTCCACTGTGBT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Reverse Complement Original Motif CCSASABCACAGYRSAGCDVRMCYKT AMTGTGACACCACAGT AMTSYGACACCACAGTRSAGCDVRMCYKT Direction: Forward Position #: 4 Overlap #: 13 Alignment: ---CCSASABCACAGYRSAGCDVRMCYKT AMTGTGACACCACAGT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement AMTSYGACACCACAGTRSAGCDVRMCYKT CCACTGTGVTGTCACAGTGCTCCA CCACTGTGAYRYCACAGTGSWSCAVRMCYKT Direction: Forward Position #: 3 Overlap #: 22 Alignment: --AMTSYGACACCACAGTRSAGCDVRMCYKT CCACTGTGVTGTCACAGTGCTCCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Reverse Complement AYMGYMVTGSWSCACTGTGMMMTCACAGTGG BAGGYCABHBTGACCKHV AHVGYCABBSTGMMCTDTGMMMTCACAGTGG Direction: Forward Position #: 1 Overlap #: 18 Alignment: AYMGYMVTGSWSCACTGTGMMMTCACAGTGG BAGGYCABHBTGACCKHV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Original Motif AHVGYCABBSTGMMCTDTGMMMTCACAGTGG RGGBCAAAGKYCA RVDGYMADGBTSAMCTDTGMMMTCACAGTGG Direction: Forward Position #: 1 Overlap #: 13 Alignment: AHVGYCABBSTGMMCTDTGMMMTCACAGTGG RGGBCAAAGKYCA------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Reverse Complement RVDGYMADGBTSAMCTDTGMMMTCACAGTGG TGRCCTKTGHCCKAB DGRSCHDTGBYCDMCTDTGMMMTCACAGTGG Direction: Forward Position #: 1 Overlap #: 15 Alignment: RVDGYMADGBTSAMCTDTGMMMTCACAGTGG TGRCCTKTGHCCKAB---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Original Motif CCACTGTGAYRYCAHAGYDGKBCADHGSKCD CACTGTGRTRTCACAGTGSWSCACT CCACTGTGRTRTCACAGTGSDSCAHTGSKCD Direction: Forward Position #: 2 Overlap #: 25 Alignment: CCACTGTGAYRYCAHAGYDGKBCADHGSKCD -CACTGTGRTRTCACAGTGSWSCACT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwCCAmAGTCmt Reverse Complement Reverse Complement DGRSCADTGSDSCACTGTGAMAKCACAGTGG VDGACTRTGGDD DDGACTRTGGDBCACTGTGAMAKCACAGTGG Direction: Forward Position #: 1 Overlap #: 12 Alignment: DGRSCADTGSDSCACTGTGAMAKCACAGTGG VDGACTRTGGDD------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 8 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Mycn Original Motif Original Motif VGCACGTGGH HSCACGTGGC VSCACGTGGC Direction: Backward Position #: 1 Overlap #: 10 Alignment: VGCACGTGGH HSCACGTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Original Motif Reverse Complement VSCACGTGGC SBCGCGGGGSB VSCRCGKGGVB Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCACGTGGC- SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCCCCGCSssk Reverse Complement Original Motif BVCCYCGMGSV SBCCCCGCCSBB SBCCCCGCSSBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BVCCYCGMGSV- SBCCCCGCCSBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement SBCCCCGCSSBB BMSMGCCYMCTKSTGGMHM SBYCSCGCCCVCTKSTGGMHM Direction: Forward Position #: 3 Overlap #: 10 Alignment: SBCCCCGCSSBB--------- --BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Reverse Complement SBYCSCGCCCVCTKSTGGMHM AGTGSWSCACTGTGAMAMCACAGTG SBYMSYGCHSCMYTGTGRMMMCACAGTG Direction: Forward Position #: 4 Overlap #: 18 Alignment: SBYCSCGCCCVCTKSTGGMHM------- ---AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Reverse Complement SBYMSYGCHSCMYTGTGRMMMCACAGTG TGMYCTTTGBCCK BGVHSTKYVBCCBTGTGRMMMCACAGTG Direction: Forward Position #: 1 Overlap #: 13 Alignment: SBYMSYGCHSCMYTGTGRMMMCACAGTG TGMYCTTTGBCCK--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Original Motif BGVHSTKYVBCCBTGTGRMMMCACAGTG VDBHMAGGTCACCCTGACCY BBVHCDGGBCMCBBKKRCCHMCACAGTG Direction: Forward Position #: 1 Overlap #: 20 Alignment: BGVHSTKYVBCCBTGTGRMMMCACAGTG VDBHMAGGTCACCCTGACCY-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Reverse Complement Reverse Complement CACTGTGYDGGMYRVBGYGVCCDGDVBB ABCACAGTGGAGCACTG ABCACWGTGBAGCACDVBGYGVCCDGDVBB Direction: Forward Position #: 3 Overlap #: 15 Alignment: --CACTGTGYDGGMYRVBGYGVCCDGDVBB ABCACAGTGGAGCACTG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement BBVHCDGGBCMCBVDGTGCTBCACWGTGBT BAGGYCABHBTGACCKHV BVGBHHRBBBWGHCHKTVCTBCACWGTGBT Direction: Forward Position #: 1 Overlap #: 18 Alignment: BBVHCDGGBCMCBVDGTGCTBCACWGTGBT BAGGYCABHBTGACCKHV------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement BVGBHHRBBBWGHCHKTVCTBCACWGTGBT CCACTGTGVTGTCACAGTGCTCCA CCASTBTGBTGTCACAGTGCTCCACWGTGBT Direction: Forward Position #: 2 Overlap #: 23 Alignment: -BVGBHHRBBBWGHCHKTVCTBCACWGTGBT CCACTGTGVTGTCACAGTGCTCCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 9 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement VHRGGTCABDBTGMCCTB CCACTGTGVTGTCACAGTGCTCCA CCACTGTDRKGTCACAGTGCYCYA Direction: Forward Position #: 7 Overlap #: 18 Alignment: ------VHRGGTCABDBTGMCCTB CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Reverse Complement Original Motif TKGMGCACTGTGACRMHACAGTGG CACTGTGRTRTCACAGTGSWSCACT TKGMGCACTGTGAYRHCACAGTGSWSCACT Direction: Forward Position #: 6 Overlap #: 19 Alignment: TKGMGCACTGTGACRMHACAGTGG------ -----CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif TKGMGCACTGTGAYRHCACAGTGSWSCACT TTCAGCACCATGGACAGCKCC CCKTSASVACMMWGKRSAGCATKGMGCACTGT Direction: Backward Position #: 3 Overlap #: 19 Alignment: TKGMGCACTGTGAYRHCACAGTGSWSCACT-- -----------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Original Motif CCKTSASVACMMWGKRSAGCATKGMGCACTGT VDBHMAGGTCACCCTGACCY CCKTSASVDCMMAGGDCASCVTGRCVYACTGT Direction: Forward Position #: 8 Overlap #: 20 Alignment: CCKTSASVACMMWGKRSAGCATKGMGCACTGT -------VDBHMAGGTCACCCTGACCY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Reverse Complement ACAGTKVGMCABGSTGDCCTRRGDVSTSAYGG GGAGCACTGTGACACCACA ACAGTGGRVCACKGTGACMBVASHVSTSAYGG Direction: Forward Position #: 6 Overlap #: 19 Alignment: ACAGTKVGMCABGSTGDCCTRRGDVSTSAYGG -----GGAGCACTGTGACACCACA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Reverse Complement CCKTSASVHSTVBYGTCACRGTGVKCCACTGT TGRCCTKTGHCCKAB TGVCBTBWGVHCKVBYGTCACRGTGVKCCACTGT Direction: Forward Position #: 3 Overlap #: 13 Alignment: --CCKTSASVHSTVBYGTCACRGTGVKCCACTGT TGRCCTKTGHCCKAB------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Original Motif TGVCBTBWGVHCKVBYGTCACRGTGVKCCACTGT TGAMCTTTGMMCYT TGACCTTTGVMCBBBYGTCACRGTGVKCCACTGT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGVCBTBWGVHCKVBYGTCACRGTGVKCCACTGT TGAMCTTTGMMCYT-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Reverse Complement Original Motif ACAGTGGRVCACKGTGACMBVVGRBCAAAGGTCA CCAGYYHVADCCRG MCAGTBBRRHMCDGTGACMBVVGRBCAAAGGTCA Direction: Forward Position #: 1 Overlap #: 14 Alignment: ACAGTGGRVCACKGTGACMBVVGRBCAAAGGTCA CCAGYYHVADCCRG-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Original Motif Original Motif MCAGTBBRRHMCDGTGACMBVVGRBCAAAGGTCA YDRCCASYAGRKGGCRSYV YDRCCASYAGRDGVCRSTGACMBVVGRBCAAAGGTCA Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---MCAGTBBRRHMCDGTGACMBVVGRBCAAAGGTCA YDRCCASYAGRKGGCRSYV------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Reverse Complement Reverse Complement TGACCTTTGVMCBBBYGTCASMGVCHMCTMSTGGMHM TGMYCTTTGBCCK TGACCTTTGVHCBBBYGTCASMGVCHMCTMSTGGMHM Direction: Forward Position #: 1 Overlap #: 13 Alignment: TGACCTTTGVMCBBBYGTCASMGVCHMCTMSTGGMHM TGMYCTTTGBCCK------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 10 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA REST Reverse Complement Reverse Complement GTTGACCTTTGACCTTT GGYGCTGTCCATGGTGCTGAA GGYGYTGWCCTTKGWSCTKWA Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---GTTGACCTTTGACCTTT- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Original Motif Reverse Complement GGYGYTGWCCTTKGWSCTKWA TGRCCTKTGHCCKAB TGRSCKYTGHCCTWBGWSCTKWA Direction: Forward Position #: 3 Overlap #: 13 Alignment: --GGYGYTGWCCTTKGWSCTKWA TGRCCTKTGHCCKAB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Original Motif TGRSCKYTGHCCTWBGWSCTKWA VDBHMAGGTCACCCTGACCY DBVBCDKKKCMCBHTGACCTKWA Direction: Forward Position #: 1 Overlap #: 20 Alignment: TGRSCKYTGHCCTWBGWSCTKWA VDBHMAGGTCACCCTGACCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Original Motif TWYAGGTCADVGYGYRYDGBVBD AGTGCTCCACTGTGGTGTCACAGT AGTGCTCCACTKTBVKGTCABAGTGYRYDGBVBD Direction: Forward Position #: 12 Overlap #: 13 Alignment: -----------TWYAGGTCADVGYGYRYDGBVBD AGTGCTCCACTGTGGTGTCACAGT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif AGTGCTCCACTKTBVKGTCABAGTGYRYDGBVBD AMTGTGACACCACAGT AVTGYKMCACYRYVGTGTCABAGTGYRYDGBVBD Direction: Forward Position #: 1 Overlap #: 16 Alignment: AGTGCTCCACTKTBVKGTCABAGTGYRYDGBVBD AMTGTGACACCACAGT------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif AVTGYKMCACYRYVGTGTCABAGTGYRYDGBVBD CAGTGCTCCACTGTGBT CAGTGCTCCACTRTGGTGTCABAGTGYRYDGBVBD Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AVTGYKMCACYRYVGTGTCABAGTGYRYDGBVBD CAGTGCTCCACTGTGBT------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement CAGTGCTCCACTRTGGTGTCABAGTGYRYDGBVBD BAGGYCABHBTGACCKHV CAGTGCBMSRCYRYVBTGWCMBHGTGYRYDGBVBD Direction: Forward Position #: 7 Overlap #: 18 Alignment: CAGTGCTCCACTRTGGTGTCABAGTGYRYDGBVBD ------BAGGYCABHBTGACCKHV----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Combined Motif Reverse Complement Original Motif DBVBCDKKKCACHVYGWCABVMKKGKSYVGCACTG BAACGTCCGC DBVBCDKKKCABWACGTCMGCMKKGKSYVGCACTG Direction: Forward Position #: 12 Overlap #: 10 Alignment: DBVBCDKKKCACHVYGWCABVMKKGKSYVGCACTG -----------BAACGTCCGC-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Original Motif DBVBCDKKKCABWACGTCMGCMKKGKSYVGCACTG TGAMCTTTGMMCYT TGAMCTTTGVMCHDCGTCMGCMKKGKSYVGCACTG Direction: Forward Position #: 1 Overlap #: 14 Alignment: DBVBCDKKKCABWACGTCMGCMKKGKSYVGCACTG TGAMCTTTGMMCYT--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif CAGTGCBMSRCYRYGCRGACGDHGYVCAAAGRTCA TGGAGCACTGTGACAVCACAGTGG TGGAGCASTGYGACACCACASDGRCGDHGYVCAAAGRTCA Direction: Forward Position #: 6 Overlap #: 19 Alignment: -----CAGTGCBMSRCYRYGCRGACGDHGYVCAAAGRTCA TGGAGCACTGTGACAVCACAGTGG---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 11 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR4A2 NR1H2RXRA Original Motif Original Motif AAGGTCAC AAAGGTCAAAGGTCAAC AGGTCAACAAGGTCAMA Direction: Backward Position #: 9 Overlap #: 8 Alignment: -AAGGTCAC-------- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Reverse Complement AGGTCAACAAGGTCAMA MGGTCAGGGTGACCTRDBHV AGGTCARSRWGRYCWVVBHV Direction: Forward Position #: 1 Overlap #: 17 Alignment: AGGTCAACAAGGTCAMA--- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement VDBBBWGKMCWKSKTGACCT BAGGYCABHBTGACCKHV VDBBBWGGHCABBBTGACCTHV Direction: Forward Position #: 5 Overlap #: 16 Alignment: VDBBBWGKMCWKSKTGACCT-- ----BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PPARGRXRA Reverse Complement Original Motif VHAGGTCAVBVTGDCCWVVBHV BTRGGDCARAGGKCA VHRGGTCARRGKKBMCWVVBHV Direction: Forward Position #: 1 Overlap #: 15 Alignment: VHAGGTCAVBVTGDCCWVVBHV BTRGGDCARAGGKCA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif VHRGGTCARRGKKBMCWVVBHV CACTGTGRTRTCACAGTGSWSCACT CACTGTKRKGTCACAGTGSWCCAVTHV Direction: Forward Position #: 6 Overlap #: 20 Alignment: -----VHRGGTCARRGKKBMCWVVBHV CACTGTGRTRTCACAGTGSWSCACT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Reverse Complement Reverse Complement VDAVTGGWSCACTGTGACYKYACAGTG AKGYYCAAAGRTCA VDAVKGBHCMAMKRTSACYKYACAGTG Direction: Forward Position #: 4 Overlap #: 14 Alignment: VDAVTGGWSCACTGTGACYKYACAGTG ---AKGYYCAAAGRTCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Original Motif VDAVKGBHCMAMKRTSACYKYACAGTG TTCAGCACCATGGACAGCKCC VDHCAGBACCAHGGWCASYKCMCAGTG Direction: Forward Position #: 2 Overlap #: 21 Alignment: VDAVKGBHCMAMKRTSACYKYACAGTG -TTCAGCACCATGGACAGCKCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement CACTGRGYKSTGWCCDTGGTBCTGHDV CCACTGTGVTGTCACAGTGCTCCA CCACTGTGBTGTSACMGTGSTSCWGHDV Direction: Forward Position #: 2 Overlap #: 23 Alignment: -CACTGRGYKSTGWCCDTGGTBCTGHDV CCACTGTGVTGTCACAGTGCTCCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Reverse Complement Original Motif VDHCWGSASCACYGTSACABCACAGTGG AMTGTGACACCACAGT AVTGTKRCACCACAGTSACABCACAGTGG Direction: Forward Position #: 2 Overlap #: 15 Alignment: -VDHCWGSASCACYGTSACABCACAGTGG AMTGTGACACCACAGT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement AVTGTKRCACCACAGTSACABCACAGTGG GGAGCACTGTGACACCACA AVTGTKRSASCACWGTGACABCACAGTGG Direction: Forward Position #: 7 Overlap #: 19 Alignment: AVTGTKRCACCACAGTSACABCACAGTGG ------GGAGCACTGTGACACCACA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 12 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RORA_1 Esrrb Original Motif Original Motif AWVDAGGTCA VBBYCAAGGTCA DTCAAGGTCAVB Direction: Backward Position #: 1 Overlap #: 10 Alignment: --AWVDAGGTCA VBBYCAAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Original Motif DTCAAGGTCAVB VDBHMAGGTCACCCTGACCY VDBCHAGGTCAVBCTGACCY Direction: Forward Position #: 2 Overlap #: 12 Alignment: -DTCAAGGTCAVB------- VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Original Motif Reverse Complement VDBCHAGGTCAVBCTGACCY GTTGACCTTTGACCTTT VDBCHAGGTCAVBYTGACCTTTGACCTTT Direction: Forward Position #: 13 Overlap #: 8 Alignment: VDBCHAGGTCAVBCTGACCY--------- ------------GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Reverse Complement Reverse Complement AAAGGTCAAAGGTCAMBVTGACCTHGVDV AKGYYCAAAGRTCA AARGGTCAAAGGTCAMBVTGACCTHGVDV Direction: Forward Position #: 2 Overlap #: 14 Alignment: AAAGGTCAAAGGTCAMBVTGACCTHGVDV -AKGYYCAAAGRTCA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif VDBCHAGGTCAVBYTGACCTTTGACCKTT BTRGGDCARAGGKCA VDBBHAGGKCAVVGKGMMCTTTGACCKTT Direction: Forward Position #: 4 Overlap #: 15 Alignment: VDBCHAGGTCAVBYTGACCTTTGACCKTT ---BTRGGDCARAGGKCA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement VDBBHAGGKCAVVGKGMMCTTTGACCKTT GGYGCTGTCCATGGTGCTGAA CCATGGTGCTGAAKSAVCTGKVDBBHAGGKCAVVGKGMMCTT Direction: Backward Position #: 14 Overlap #: 8 Alignment: VDBBHAGGKCAVVGKGMMCTTTGACCKTT------------- ---------------------GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 13 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF ESR2 Reverse Complement Reverse Complement GCGGACGTTV BAGGYCABHBTGACCKHV BCKGACSTWVBAGGYCAB Direction: Backward Position #: 1 Overlap #: 10 Alignment: --------GCGGACGTTV BAGGYCABHBTGACCKHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement BTGMCCTBVWASGTCRGB MGGTCAGGGTGACCTRDBHV MGGTCAGGGTKRCCYDBVHASGTCRGB Direction: Forward Position #: 10 Overlap #: 11 Alignment: ---------BTGMCCTBVWASGTCRGB MGGTCAGGGTGACCTRDBHV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR1H2RXRA Combined Motif Original Motif Original Motif MGGTCAGGGTKRCCYDBVHASGTCRGB AAAGGTCAAAGGTCAAC MGGTCAGGGTKRCCYDBVAAGGTCARAGGTCAAC Direction: Forward Position #: 18 Overlap #: 10 Alignment: MGGTCAGGGTKRCCYDBVHASGTCRGB------- -----------------AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 14 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA NR1H2RXRA Original Motif Original Motif BTRGGDCARAGGKCA AAAGGTCAAAGGTCAAC ACVDRGGTCAAAGGTCA Direction: Backward Position #: 3 Overlap #: 15 Alignment: BTRGGDCARAGGKCA-- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Reverse Complement TGACCTTTGACCKDBGT BAGGYCABHBTGACCKHV BAGKBMMCTBTGACCKDBGT Direction: Forward Position #: 4 Overlap #: 15 Alignment: ---TGACCTTTGACCKDBGT BAGGYCABHBTGACCKHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif ACBDRGGTCAVAGRYBRCTB VDBHMAGGTCACCCTGACCY ABBHVRGKYMAVBVTGACYB Direction: Forward Position #: 1 Overlap #: 20 Alignment: ACBDRGGTCAVAGRYBRCTB VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT Combined Motif Original Motif Reverse Complement ABBHVRGKYMAVBVTGACYB AGTGSWSCACTGTGAMAMCACAGTG ABVVDGGDSCACTGTGACMHCACAGTG Direction: Forward Position #: 3 Overlap #: 18 Alignment: ABBHVRGKYMAVBVTGACYB------- --AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Original Motif CACTGTGDYGTCACAGTGSDCCDVBBT YDRCCASYAGRKGGCRSYV CACTKTGCCRBCASRGKGCRCCVVBBT Direction: Forward Position #: 5 Overlap #: 19 Alignment: CACTGTGDYGTCACAGTGSDCCDVBBT ----YDRCCASYAGRKGGCRSYV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Reverse Complement ABVVBGGMGCYCKSTGBKGGCAYAGTG GGYGCTGTCCATGGTGCTGAA RBHGCTGTCCHHGGTGCTGVHAYAGTG Direction: Forward Position #: 1 Overlap #: 21 Alignment: ABVVBGGMGCYCKSTGBKGGCAYAGTG GGYGCTGTCCATGGTGCTGAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement CACTKTDBCAGCACCHDGGACAGCHBM CCACTGTGVTGTCACAGTGCTCCA CCACTGTGBYRKCACMVTGSWCMRCHBM Direction: Forward Position #: 2 Overlap #: 23 Alignment: -CACTKTDBCAGCACCHDGGACAGCHBM CCACTGTGVTGTCACAGTGCTCCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement CCACTGTGBYRKCACMVTGSWCMRCHBM GGAGCACTGTGACACCACA GGASCACTGTGACABCACAVTGSWCMRCHBM Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---CCACTGTGBYRKCACMVTGSWCMRCHBM GGAGCACTGTGACACCACA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Original Motif GGASCACTGTGACABCACAVTGSWCMRCHBM TGAMCTTTGMMCYT KGAVCWYTGHVVYDBCACAVTGSWCMRCHBM Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGASCACTGTGACABCACAVTGSWCMRCHBM TGAMCTTTGMMCYT----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Reverse Complement Reverse Complement RBHGKRGWSCAVTGTGBDKVVHCAKWGVTCY CKGGDTBDMMCTGG CDGGDTDGAVCDGKGTGBDKVVHCAKWGVTCY Direction: Forward Position #: 2 Overlap #: 13 Alignment: -RBHGKRGWSCAVTGTGBDKVVHCAKWGVTCY CKGGDTBDMMCTGG------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 15 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tcfcp2l1 ESR1 Original Motif Reverse Complement CCAGYYHVADCCRG MGGTCAGGGTGACCTRDBHV MGGYCAGBBTGAVCYRGBHV Direction: Forward Position #: 4 Overlap #: 14 Alignment: ---CCAGYYHVADCCRG--- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Original Motif VDBCKKGVTCAVVCTGKCCY YDRCCASYAGRKGGCRSYV VDBYDDSCWCHAGVKGGCVBYV Direction: Forward Position #: 4 Overlap #: 17 Alignment: VDBCKKGVTCAVVCTGKCCY-- ---YDRCCASYAGRKGGCRSYV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement BMBVGCCRVCTDGWGSHHKBHV BAGGYCABHBTGACCKHV BVVGGYCAVCBTGASCBHDBHV Direction: Forward Position #: 2 Overlap #: 18 Alignment: BMBVGCCRVCTDGWGSHHKBHV -BAGGYCABHBTGACCKHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement BVVGGYCAVCBTGASCBHDBHV TGRCCTKTGHCCKAB BVVGKBMMCYKTGHCCKHBBHV Direction: Forward Position #: 5 Overlap #: 15 Alignment: BVVGGYCAVCBTGASCBHDBHV ----TGRCCTKTGHCCKAB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT Combined Motif Original Motif Original Motif BVVGKBMMCYKTGHCCKHBBHV CAGTGCTCCACTGTGBT BVVGKBMMCYKTGHCMDTGCTCCACTGTGBT Direction: Forward Position #: 15 Overlap #: 8 Alignment: BVVGKBMMCYKTGHCCKHBBHV--------- --------------CAGTGCTCCACTGTGBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement ABCACAGTGGAGCAHRGHCARMGRRBRCBVV AGTGSWSCACTGTGAMAMCACAGTG AGTGSASCACWGTGVMVCMAVRBYRRMGRRBRCBVV Direction: Forward Position #: 6 Overlap #: 20 Alignment: -----ABCACAGTGGAGCAHRGHCARMGRRBRCBVV AGTGSWSCACTGTGAMAMCACAGTG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif BVVGKBMMCYKKMBKVTRGBYBCACWGTGSTSCACT TTCAGCACCATGGACAGCKCC TTCAGBACCHTGGACWGYDVBYBCACWGTGSTSCACT Direction: Forward Position #: 2 Overlap #: 20 Alignment: -BVVGKBMMCYKKMBKVTRGBYBCACWGTGSTSCACT TTCAGCACCATGGACAGCKCC---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HNF4A Combined Motif Original Motif Original Motif TTCAGBACCHTGGACWGYDVBYBCACWGTGSTSCACT RGGBCAAAGKYCA TTCAGBACVVBBSAMAGBBCHYBCACWGTGSTSCACT Direction: Forward Position #: 9 Overlap #: 13 Alignment: TTCAGBACCHTGGACWGYDVBYBCACWGTGSTSCACT --------RGGBCAAAGKYCA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Reverse Complement AGTGSASCACWGTGVMHGVVCTYTSBVVVGTBCTGAA AGTGCTCCACTGTGDTG AGTGCWCCACTGTGVHBGVVCTYTSBVVVGTBCTGAA Direction: Forward Position #: 1 Overlap #: 17 Alignment: AGTGSASCACWGTGVMHGVVCTYTSBVVVGTBCTGAA AGTGCTCCACTGTGDTG-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- NR2F1 Combined Motif Reverse Complement Reverse Complement TTCAGBACVVBBSAMAGBBCBHVCACAGTGGWGCACT AKGYYCAAAGRTCA TTMDGBHCAAHGVWCAGBBCBHVCACAGTGGWGCACT Direction: Forward Position #: 3 Overlap #: 14 Alignment: TTCAGBACVVBBSAMAGBBCBHVCACAGTGGWGCACT --AKGYYCAAAGRTCA--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 16 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF ESR1 Original Motif Reverse Complement YDRCCASYAGRKGGCRSYV MGGTCAGGGTGACCTRDBHV MBGDCMRSBWGRBSKVRSHV Direction: Forward Position #: 2 Overlap #: 19 Alignment: -YDRCCASYAGRKGGCRSYV MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif MBGDCMRSBWGRBSKVRSHV AGTGCTCCACTGTGGTGTCACAGT AGTGCTCCACTGTGVTGTCAVVBTGRBSKVRSHV Direction: Forward Position #: 15 Overlap #: 10 Alignment: --------------MBGDCMRSBWGRBSKVRSHV AGTGCTCCACTGTGGTGTCACAGT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement AGTGCTCCACTGTGVTGTCAVVBTGRBSKVRSHV AGTGSWSCACTGTGAMAMCACAGTG AGTGCTSCACTGTGVHRHCACAGTGRBSKVRSHV Direction: Forward Position #: 1 Overlap #: 25 Alignment: AGTGCTCCACTGTGVTGTCAVVBTGRBSKVRSHV AGTGSWSCACTGTGAMAMCACAGTG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif AGTGCTSCACTGTGVHRHCACAGTGRBSKVRSHV CAGTGCTCCACTGTGBT CAGTGCTCCACTGTGVTRHCACAGTGRBSKVRSHV Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AGTGCTSCACTGTGVHRHCACAGTGRBSKVRSHV CAGTGCTCCACTGTGBT------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Original Motif Original Motif CAGTGCTCCACTGTGVTRHCACAGTGRBSKVRSHV CAHCACAGTGGAGCACT CAGTGCWCCACWGTGGWGCMMYAGTGRBSKVRSHV Direction: Forward Position #: 6 Overlap #: 17 Alignment: CAGTGCTCCACTGTGVTRHCACAGTGRBSKVRSHV -----CAHCACAGTGGAGCACT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement CAGTGCWCCACWGTGGWGCMMYAGTGRBSKVRSHV CCACTGTGVTGTCACAGTGCTCCA CCACYRKKGYDYCACAGTGSWSCAMYAGTGRBSKVRSHV Direction: Forward Position #: 5 Overlap #: 20 Alignment: ----CAGTGCWCCACWGTGGWGCMMYAGTGRBSKVRSHV CCACTGTGVTGTCACAGTGCTCCA--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Reverse Complement Original Motif BDSMVYSBKCACTKYTGSWSCACTGTGMHMCRRMMGTGG CCAGYYHVADCCRG CCDGHBYVVDCMVKKYTGSWSCACTGTGMHMCRRMMGTGG Direction: Forward Position #: 2 Overlap #: 13 Alignment: -BDSMVYSBKCACTKYTGSWSCACTGTGMHMCRRMMGTGG CCAGYYHVADCCRG-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif CCDGHBYVVDCMVKKYTGSWSCACTGTGMHMCRRMMGTGG VHRGGTCABDBTGMCCTB CHRGBTCAVDCHVDBCTGSWSCACTGTGMHMCRRMMGTGG Direction: Forward Position #: 1 Overlap #: 18 Alignment: CCDGHBYVVDCMVKKYTGSWSCACTGTGMHMCRRMMGTGG VHRGGTCABDBTGMCCTB---------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif CHRGBTCAVDCHVDBCTGSWSCACTGTGMHMCRRMMGTGG BTRGGDCARAGGKCA CHRGGBCAVRGDBBHCTGSWSCACTGTGMHMCRRMMGTGG Direction: Forward Position #: 1 Overlap #: 15 Alignment: CHRGBTCAVDCHVDBCTGSWSCACTGTGMHMCRRMMGTGG BTRGGDCARAGGKCA------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCCCCGCSssk Original Motif Reverse Complement CHRGGBCAVRGDBBHCTGSWSCACTGTGMHMCRRMMGTGG BBSGGCGGGGBS BBVGGCSRGGSBBBHCTGSWSCACTGTGMHMCRRMMGTGG Direction: Forward Position #: 1 Overlap #: 12 Alignment: CHRGGBCAVRGDBBHCTGSWSCACTGTGMHMCRRMMGTGG BBSGGCGGGGBS---------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 17 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement TGTGGTGTCACAGTGCTCC CCACTGTGVTGTCACAGTGCTCCA CCACTGTGGTGTCACAGTGCTCCA Direction: Forward Position #: 5 Overlap #: 19 Alignment: ----TGTGGTGTCACAGTGCTCC- CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement TGGAGCACTGTGACACCACAGTGG AGTGSWSCACTGTGAMAMCACAGTG AGTGGAGCACTGTGACAVCACAGTGG Direction: Forward Position #: 3 Overlap #: 23 Alignment: --TGGAGCACTGTGACACCACAGTGG AGTGSWSCACTGTGAMAMCACAGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif AGTGGAGCACTGTGACAVCACAGTGG AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGRYRTCACAGTGG Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTGGAGCACTGTGACAVCACAGTGG AGTGCTCCACTGTGGTGTCACAGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Original Motif Original Motif AGTGSWSCACTGTGRYRTCACAGTGG VDBHMAGGTCACCCTGACCY VDVVYRSKBCACYSTGACVYCACAGTGG Direction: Forward Position #: 3 Overlap #: 18 Alignment: --AGTGSWSCACTGTGRYRTCACAGTGG VDBHMAGGTCACCCTGACCY-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Original Motif CCACTGTGMVGTCASMGTGVYSMMVBHV VHRGGTCABDBTGMCCTB CCACTGTDAGGTCABVGTGVCCYVVBHV Direction: Forward Position #: 7 Overlap #: 18 Alignment: CCACTGTGMVGTCASMGTGVYSMMVBHV ------VHRGGTCABDBTGMCCTB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Reverse Complement CCACTGTDAGGTCABVGTGVCCYVVBHV ABCACAGTGGAGCACTG ACCACWGTGRRGYMMBDGTGVCCYVVBHV Direction: Forward Position #: 2 Overlap #: 16 Alignment: -CCACTGTDAGGTCABVGTGVCCYVVBHV ABCACAGTGGAGCACTG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AmTGTGACACCACAGT Combined Motif Reverse Complement Original Motif VDVVBMGGBCACHVYRKCKMCACWGTGGT AMTGTGACACCACAGT VDAVTVKGACACCAYAGYKMCACWGTGGT Direction: Forward Position #: 3 Overlap #: 16 Alignment: VDVVBMGGBCACHVYRKCKMCACWGTGGT --AMTGTGACACCACAGT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Original Motif VDAVTVKGACACCAYAGYKMCACWGTGGT BTRGGDCARAGGKCA VDAVTVTGRSACMAHRGYBMCACWGTGGT Direction: Forward Position #: 6 Overlap #: 15 Alignment: VDAVTVKGACACCAYAGYKMCACWGTGGT -----BTRGGDCARAGGKCA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Original Motif ACCACWGTGYBMCMHTYGTSMCAVAVTHV CAHCACAGTGGAGCACT CACCACWGTGKAGCAYTYGTSMCAVAVTHV Direction: Forward Position #: 2 Overlap #: 16 Alignment: -ACCACWGTGYBMCMHTYGTSMCAVAVTHV CAHCACAGTGGAGCACT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Reverse Complement Reverse Complement VDAVTVTGRSACMAKTGCTYCACWGTGGTG TGACCTTGMBBB TGACYTTGVSVBMAKTGCTYCACWGTGGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: VDAVTVTGRSACMAKTGCTYCACWGTGGTG TGACCTTGMBBB------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 18 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sscCCCGCGcs ssCCCCGCSssk Original Motif Original Motif BSCCCCGCGBS SBCCCCGCCSBB SSCCCCGCSSSB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BSCCCCGCGBS- SBCCCCGCCSBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- gCGCGCsCgsG Combined Motif Original Motif Original Motif SSCCCCGCSSSB GCGCGCSCGCG SSSCSCGCSCSSG Direction: Forward Position #: 3 Overlap #: 10 Alignment: SSCCCCGCSSSB- --GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCkTGCssk Original Motif Original Motif SSSCSCGCSCSSG SSGCKTGCSSK SSGCGYGCSSKSG Direction: Forward Position #: 1 Overlap #: 11 Alignment: SSSCSCGCSCSSG SSGCKTGCSSK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement SSGCGYGCSSKSG BMSMGCCYMCTKSTGGMHM SSBCGYGCCCVCKKSTGGMHM Direction: Forward Position #: 3 Overlap #: 11 Alignment: SSGCGYGCSSKSG-------- --BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Reverse Complement YDRCCASYRGVGGGCKCGBSS MGGTCAGGGTGACCTRDBHV HGGYCASBRKGDSSYGBVBVS Direction: Forward Position #: 1 Overlap #: 20 Alignment: YDRCCASYRGVGGGCKCGBSS MGGTCAGGGTGACCTRDBHV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cCGCGGrCACG Combined Motif Reverse Complement Original Motif SVBVBCKSSHCRMBSTGKCCD CCGCGGRCACG SVBCCGCGGVCACGSTGKCCD Direction: Forward Position #: 4 Overlap #: 11 Alignment: SVBVBCKSSHCRMBSTGKCCD ---CCGCGGRCACG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif SVBCCGCGGVCACGSTGKCCD TTCAGCACCATGGACAGCKCC TTCAGSACCVYGGACASVBYSKCCD Direction: Forward Position #: 5 Overlap #: 17 Alignment: ----SVBCCGCGGVCACGSTGKCCD TTCAGCACCATGGACAGCKCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement TTCAGSACCVYGGACASVBYSKCCD DCCACGTGCV DYCASGWSCVYGGACASVBYSKCCD Direction: Forward Position #: 1 Overlap #: 10 Alignment: TTCAGSACCVYGGACASVBYSKCCD DCCACGTGCV--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement DYCASGWSCVYGGACASVBYSKCCD GCCACGTGSD DCCACGTGCVYGGACASVBYSKCCD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DYCASGWSCVYGGACASVBYSKCCD GCCACGTGSD--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- srACyCCGAyr Combined Motif Original Motif Original Motif DCCACGTGCVYGGACASVBYSKCCD SRACYCCGAYR DCCACGTGCVYGGACASVBYSRMCBCCGAYR Direction: Forward Position #: 21 Overlap #: 5 Alignment: DCCACGTGCVYGGACASVBYSKCCD------ --------------------SRACYCCGAYR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 19 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- atactttggc wwCCAmAGTCmt Reverse Complement Original Motif GCCAAAGTAT DDCCAMAGTCHB BGCCAAAGTMTD Direction: Backward Position #: 2 Overlap #: 10 Alignment: -GCCAAAGTAT- DDCCAMAGTCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif taaacgatgcc Reverse Complement Original Motif DAYACTTTGGCV TAAACGATGCC TAWACKWTGSCV Direction: Forward Position #: 1 Overlap #: 11 Alignment: DAYACTTTGGCV TAAACGATGCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR1H2RXRA Original Motif Reverse Complement TAWACKWTGSCV GTTGACCTTTGACCTTT GTTRAMCTTTGVCCTTT Direction: Forward Position #: 3 Overlap #: 12 Alignment: --TAWACKWTGSCV--- GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement GTTRAMCTTTGVCCTTT GGAGCACTGTGACACCACA GKWGMACTKTGACMYYWCA Direction: Forward Position #: 1 Overlap #: 17 Alignment: GTTRAMCTTTGVCCTTT-- GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement GKWGMACTKTGACMYYWCA AGTGSWSCACTGTGAMAMCACAGTG AGTDGHVCWBTGWSAHHHCACAGTG Direction: Forward Position #: 2 Overlap #: 19 Alignment: -GKWGMACTKTGACMYYWCA----- AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Reverse Complement Reverse Complement CACTGTGHHDTSWCABWGBHCHACT TGMYCTTTGBCCK TGMHCTKTGBHBTSWCABWGBHCHACT Direction: Forward Position #: 3 Overlap #: 11 Alignment: --CACTGTGHHDTSWCABWGBHCHACT TGMYCTTTGBCCK-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Original Motif Original Motif TGMHCTKTGBHBTSWCABWGBHCHACT TGAMCTTTGMMCYT TGAMCTTTGVHCHBWCABWGBHCHACT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGMHCTKTGBHBTSWCABWGBHCHACT TGAMCTTTGMMCYT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Original Motif AGTDGHVCWBTGWBHGDBCAAAGYTCA TGGAGCACTGTGACAVCACAGTGG WGKAGMACWGTGACABVACARWGBTCA Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTDGHVCWBTGWBHGDBCAAAGYTCA TGGAGCACTGTGACAVCACAGTGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif WGKAGMACWGTGACABVACARWGBTCA AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGDYRTCACAGTGBTCA Direction: Forward Position #: 3 Overlap #: 22 Alignment: --WGKAGMACWGTGACABVACARWGBTCA AGTGCTCCACTGTGGTGTCACAGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Original Motif Reverse Complement AGTGSWSCACTGTGDYRTCACAGTGBTCA AGTGCTCCACTGTGDTG AGTGCTCCACTGTGDTGTCACAGTGBTCA Direction: Forward Position #: 1 Overlap #: 17 Alignment: AGTGSWSCACTGTGDYRTCACAGTGBTCA AGTGCTCCACTGTGDTG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 20 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CagTGCTCCACTGTGgT CTCF Original Motif Reverse Complement CAGTGCTCCACTGTGBT BMSMGCCYMCTKSTGGMHM SMGYSCYCYACTGKGBHBM Direction: Backward Position #: 1 Overlap #: 17 Alignment: --CAGTGCTCCACTGTGBT BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement SMGYSCYCYACTGKGBHBM GGYGCTGTCCATGGTGCTGAA GSMGCTSTCCABKGTGCTGAA Direction: Forward Position #: 2 Overlap #: 19 Alignment: -SMGYSCYCYACTGKGBHBM- GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Reverse Complement Reverse Complement TTCAGCACYBTGGASAGCRSC GGAGCACTGTGACACCACA TTCAGCACYBTGGAGMRCWGYGACACCACA Direction: Forward Position #: 12 Overlap #: 10 Alignment: TTCAGCACYBTGGASAGCRSC--------- -----------GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Reverse Complement Reverse Complement TGTGGTGTCMCWGKRCTCCABKGTGCTGAA ACTGTGACACCACAGTGGAGCACT ACTGTGRYRYCACAGTGSWSCACTGTGCTGAA Direction: Forward Position #: 3 Overlap #: 22 Alignment: --TGTGGTGTCMCWGKRCTCCABKGTGCTGAA ACTGTGACACCACAGTGGAGCACT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif ACTGTGRYRYCACAGTGSWSCACTGTGCTGAA CACTGTGRTRTCACAGTGSWSCACT CACTGTGRYRTCACAGTGSWSCACTGTGCTGAA Direction: Forward Position #: 2 Overlap #: 24 Alignment: -ACTGTGRYRYCACAGTGSWSCACTGTGCTGAA CACTGTGRTRTCACAGTGSWSCACT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement CACTGTGRYRTCACAGTGSWSCACTGTGCTGAA CCACTGTGVTGTCACAGTGCTCCA CCACTGTGVTGTCACAGTGCTCCACTGTGCTGAA Direction: Forward Position #: 2 Overlap #: 23 Alignment: -CACTGTGRYRTCACAGTGSWSCACTGTGCTGAA CCACTGTGVTGTCACAGTGCTCCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Reverse Complement TTCAGCACAGTGGAGCACTGTGACAVCACAGTGG AGTGCTCCACTGTGDTG AGTKCWSCACWGTGGWGCACTGTGACAVCACAGTGG Direction: Forward Position #: 3 Overlap #: 15 Alignment: --TTCAGCACAGTGGAGCACTGTGACAVCACAGTGG AGTGCTCCACTGTGDTG------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Original Motif AGTKCWSCACWGTGGWGCACTGTGACAVCACAGTGG AMTGTGACACCACAGT AMTRKKACACCACAGTGGWGCACTGTGACAVCACAGTGG Direction: Forward Position #: 4 Overlap #: 13 Alignment: ---AGTKCWSCACWGTGGWGCACTGTGACAVCACAGTGG AMTGTGACACCACAGT----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Tcfcp2l1 Original Motif Original Motif AMTRKKACACCACAGTGGWGCACTGTGACAVCACAGTGG CCAGYYHVADCCRG CMVKDTBDMACCASAGTGGWGCACTGTGACAVCACAGTGG Direction: Forward Position #: 2 Overlap #: 13 Alignment: -AMTRKKACACCACAGTGGWGCACTGTGACAVCACAGTGG CCAGYYHVADCCRG-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwCCAmAGTCmt Reverse Complement Reverse Complement CCACTGTGVTGTCACAGTGCWCCACTSTGGTRDBADYBRG VDGACTRTGGDD VVSACTGTGGTDTCACAGTGCWCCACTSTGGTRDBADYBRG Direction: Forward Position #: 2 Overlap #: 11 Alignment: -CCACTGTGVTGTCACAGTGCWCCACTSTGGTRDBADYBRG VDGACTRTGGDD----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 21 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AmTGTGACACCACAGT AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement AMTGTGACACCACAGT ACTGTGACACCACAGTGGAGCACT ACTGTGACACCACAGTGGAGCACT Direction: Forward Position #: 1 Overlap #: 16 Alignment: AMTGTGACACCACAGT-------- ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement ACTGTGACACCACAGTGGAGCACT CCACTGTGVTGTCACAGTGCTCCA CCACTGTGAYRYCACAGTGSWSCACT Direction: Forward Position #: 3 Overlap #: 22 Alignment: --ACTGTGACACCACAGTGGAGCACT CCACTGTGVTGTCACAGTGCTCCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement AGTGSWSCACTGTGMKMTCACAGTGG AGTGSWSCACTGTGAMAMCACAGTG AGTGSWSCACTGTGAHMHCACAGTGG Direction: Forward Position #: 1 Overlap #: 25 Alignment: AGTGSWSCACTGTGMKMTCACAGTGG AGTGSWSCACTGTGAMAMCACAGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Original Motif AGTGSWSCACTGTGAHMHCACAGTGG TGTGGTGTCACAGTGCTCC TRKKGYDKCACWGTGMTMCCACAGTGG Direction: Forward Position #: 2 Overlap #: 18 Alignment: -AGTGSWSCACTGTGAHMHCACAGTGG TGTGGTGTCACAGTGCTCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif TRKKGYDKCACWGTGMTMCCACAGTGG CAGTGCTCCACTGTGBT YAKTGCTYCACTGTGVTMCCACAGTGG Direction: Forward Position #: 1 Overlap #: 17 Alignment: TRKKGYDKCACWGTGMTMCCACAGTGG CAGTGCTCCACTGTGBT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Original Motif CCACTGTGGRAVCACAGTGKAGCAYTM CAHCACAGTGGAGCACT CACCACWGTGGARCMMYAGTGKAGCAYTM Direction: Forward Position #: 3 Overlap #: 15 Alignment: --CCACTGTGGRAVCACAGTGKAGCAYTM CAHCACAGTGGAGCACT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif YAKTGCTYCACTKYRGMTCCACWGTGGTG VDBHMAGGTCACCCTGACCY VBVBBRSKYCACHBTGVCYYCACWGTGGTG Direction: Forward Position #: 2 Overlap #: 19 Alignment: -YAKTGCTYCACTKYRGMTCCACWGTGGTG VDBHMAGGTCACCCTGACCY---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement VBVBBRSKYCACHBTGVCYYCACWGTGGTG GGYGCTGTCCATGGTGCTGAA AASRCBCTGDCCHYRSTGYKGVBVBBRSKYCA Direction: Backward Position #: 3 Overlap #: 19 Alignment: VBVBBRSKYCACHBTGVCYYCACWGTGGTG-- -----------GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 22 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTGTGrYrtCACAGTGswsCAcT AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement CACTGTGRTRTCACAGTGSWSCACT ACTGTGACACCACAGTGGAGCACT ACTGTGAYAYCACAGTGSAGCACTC Direction: Backward Position #: 1 Overlap #: 24 Alignment: CACTGTGRTRTCACAGTGSWSCACT -ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement ACTGTGAYAYCACAGTGSAGCACTC CCACTGTGVTGTCACAGTGCTCCA CCACTGTGRTRTCACAGTGSWSCACTC Direction: Forward Position #: 3 Overlap #: 22 Alignment: --ACTGTGAYAYCACAGTGSAGCACTC CCACTGTGVTGTCACAGTGCTCCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif GAGTGSWSCACTGTGAMAKCACAGTGG VDBHMAGGTCACCCTGACCY VGVVYRGRBCACYSTGACMBCACAGTGG Direction: Forward Position #: 2 Overlap #: 19 Alignment: -GAGTGSWSCACTGTGAMAKCACAGTGG VDBHMAGGTCACCCTGACCY-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Reverse Complement Original Motif CCACTGTGVRGTCASMGTGBMCMMVBCV YDRCCASYAGRKGGCRSYV YDVCMMYBWGRGGKCASHVTGBMCMMVBCV Direction: Forward Position #: 3 Overlap #: 17 Alignment: --CCACTGTGVRGTCASMGTGBMCMMVBCV YDRCCASYAGRKGGCRSYV----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Reverse Complement YDVCMMYBWGRGGKCASHVTGBMCMMVBCV GGAGCACTGTGACACCACA GBAGCACTGTGABRBCACAVTGBMCMMVBCV Direction: Forward Position #: 2 Overlap #: 18 Alignment: -YDVCMMYBWGRGGKCASHVTGBMCMMVBCV GGAGCACTGTGACACCACA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Original Motif Reverse Complement GBAGCACTGTGABRBCACAVTGBMCMMVBCV AGTGCTCCACTGTGDTG AGTGCWSCACTGTGRBRBCACAVTGBMCMMVBCV Direction: Forward Position #: 4 Overlap #: 14 Alignment: ---GBAGCACTGTGABRBCACAVTGBMCMMVBCV AGTGCTCCACTGTGDTG----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif AGTGCWSCACTGTGRBRBCACAVTGBMCMMVBCV CAGTGCTCCACTGTGBT CAGTGCTCCACTGTGDTRBCACAVTGBMCMMVBCV Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AGTGCWSCACTGTGRBRBCACAVTGBMCMMVBCV CAGTGCTCCACTGTGBT------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Reverse Complement VGVVYRGRBCAVTGTGBMAHCACAGTGGAGCACTG BAGGYCABHBTGACCKHV VGVVBRGGBCAHHBTGVCMBCACAGTGGAGCACTG Direction: Forward Position #: 5 Overlap #: 18 Alignment: VGVVYRGRBCAVTGTGBMAHCACAGTGGAGCACTG ----BAGGYCABHBTGACCKHV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Original Motif Reverse Complement VGVVBRGGBCAHHBTGVCMBCACAGTGGAGCACTG ACTGTGGTGTCACART AVKDTGRKGTCACAVTGVCMBCACAGTGGAGCACTG Direction: Forward Position #: 2 Overlap #: 15 Alignment: -VGVVBRGGBCAHHBTGVCMBCACAGTGGAGCACTG ACTGTGGTGTCACART-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Original Motif AVKDTGRKGTCACAVTGVCMBCACAGTGGAGCACTG TTCAGCACCATGGACAGCKCC AVKDTKSDGYMMCABKGACAGCDCMGTGGAGCACTG Direction: Forward Position #: 5 Overlap #: 21 Alignment: AVKDTGRKGTCACAVTGVCMBCACAGTGGAGCACTG ----TTCAGCACCATGGACAGCKCC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 23 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement TGGAGCACTGTGACAVCACAGTGG AGTGSWSCACTGTGAMAMCACAGTG GGAG Direction: Backward Position #: 3 Overlap #: 23 Alignment: ---TGGAGCACTGTGACAVCACAGTGG-------------------------- --AGTGSWSCACTGTGAMAMCACAGTG-------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Original Motif GGAG AGTGCTCCACTGTGGTGTCACAGT RGWGCTCCACTGTGGTGTCACAGT Direction: Forward Position #: 1 Overlap #: 4 Alignment: GGAG-------------------- AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Original Motif RGWGCTCCACTGTGGTGTCACAGT VHRGGTCABDBTGMCCTB RGWGCTCCACTGTGRKGTCACABTGMCCTB Direction: Forward Position #: 13 Overlap #: 12 Alignment: RGWGCTCCACTGTGGTGTCACAGT------ ------------VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif BAGGYCABTGTGACRMCACAGTGGAGCWCM VDBHMAGGTCACCCTGACCY VDBHVAGGTCACBSTGACVYCACAGTGGAGCWCM Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----BAGGYCABTGTGACRMCACAGTGGAGCWCM VDBHMAGGTCACCCTGACCY-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Reverse Complement Original Motif RGWGCTCCACTGTGKVGTCASVGTGACCTVDBHV TGTGGTGTCACAGTGCTCC TGTGGTGYYMCASTGYKBCGTCASVGTGACCTVDBHV Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---RGWGCTCCACTGTGKVGTCASVGTGACCTVDBHV TGTGGTGTCACAGTGCTCC------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Original Motif TGTGGTGYYMCASTGYKBCGTCASVGTGACCTVDBHV CAGTGCTCCACTGTGBT YDKKGYKCCACWGTGBTBCGTCASVGTGACCTVDBHV Direction: Forward Position #: 1 Overlap #: 17 Alignment: TGTGGTGYYMCASTGYKBCGTCASVGTGACCTVDBHV CAGTGCTCCACTGTGBT-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Original Motif Reverse Complement YDKKGYKCCACWGTGBTBCGTCASVGTGACCTVDBHV AGTGCTCCACTGTGDTG YAKTGCTCCACWGTGBTGCGTCASVGTGACCTVDBHV Direction: Forward Position #: 2 Overlap #: 17 Alignment: YDKKGYKCCACWGTGBTBCGTCASVGTGACCTVDBHV -AGTGCTCCACTGTGDTG------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Original Motif Reverse Complement YAKTGCTCCACWGTGBTGCGTCASVGTGACCTVDBHV BMSMGCCYMCTKSTGGMHM BVGHGCYCCMYTGTGGHBMGTCASVGTGACCTVDBHV Direction: Forward Position #: 1 Overlap #: 19 Alignment: YAKTGCTCCACWGTGBTGCGTCASVGTGACCTVDBHV BMSMGCCYMCTKSTGGMHM------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Reverse Complement VDBHVAGGTCACBSTGACRBHCCACAMRGGKGCHCBV TGRCCTKTGHCCKAB VDBHVAGKBMMCTBTGMCVBHSCACAMRGGKGCHCBV Direction: Forward Position #: 8 Overlap #: 15 Alignment: VDBHVAGGTCACBSTGACRBHCCACAMRGGKGCHCBV -------TGRCCTKTGHCCKAB--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Reverse Complement BVGHGCYCCMYTGTGSHBVGYCAVAGYRBRCTVDBHV GGYGCTGTCCATGGTGCTGAA BDGHGCTSYCCDBKGTBCKGHVAVAGYRBRCTVDBHV Direction: Forward Position #: 2 Overlap #: 21 Alignment: BVGHGCYCCMYTGTGSHBVGYCAVAGYRBRCTVDBHV -GGYGCTGTCCATGGTGCTGAA--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 24 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk ESR1 Reverse Complement Reverse Complement BBSGGCGGGGBS MGGTCAGGGTGACCTRDBHV MGGTCAGBBKGRCSKGGBBV Direction: Forward Position #: 8 Overlap #: 12 Alignment: -------BBSGGCGGGGBS- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Reverse Complement VBBCCYSGMCRBBCTGACCY BMSMGCCYMCTKSTGGMHM VBVSCBCSCCCTBSTGRCCH Direction: Forward Position #: 2 Overlap #: 19 Alignment: VBBCCYSGMCRBBCTGACCY -BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Reverse Complement Original Motif DGGMCASBAGGGSGBGSVVV BTRGGDCARAGGKCA DBDVSRBCARRGGKCRSVVV Direction: Forward Position #: 2 Overlap #: 15 Alignment: DGGMCASBAGGGSGBGSVVV -BTRGGDCARAGGKCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Reverse Complement Reverse Complement VBVSKGYCCKMTGBKSBHBH BAGGYCABHBTGACCKHV BAGGHCDBBSYGAYBBDSBHBH Direction: Forward Position #: 3 Overlap #: 16 Alignment: --VBVSKGYCCKMTGBKSBHBH BAGGYCABHBTGACCKHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif DBDVSDBBKTCMSBBDGDCCTB TTCAGCACCATGGACAGCKCC TTCAGSACCABGGWCAGBBHSDCCTB Direction: Forward Position #: 5 Overlap #: 17 Alignment: ----DBDVSDBBKTCMSBBDGDCCTB TTCAGCACCATGGACAGCKCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Reverse Complement Reverse Complement BAGGHSDBBCTGWCCVTGGTSCTGAA SBCGCGGGGSB SBMGCBGGBSSTGWCCVTGGTSCTGAA Direction: Forward Position #: 2 Overlap #: 10 Alignment: -BAGGHSDBBCTGWCCVTGGTSCTGAA SBCGCGGGGSB---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- gCGCGCsCgsG Combined Motif Original Motif Reverse Complement SBMGCBGGBSSTGWCCVTGGTSCTGAA CGCGSGCGCGC SBMGCCGSGSGYGCSCVTGGTSCTGAA Direction: Forward Position #: 6 Overlap #: 11 Alignment: SBMGCBGGBSSTGWCCVTGGTSCTGAA -----CGCGSGCGCGC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCkTGCssk Original Motif Reverse Complement SBMGCCGSGSGYGCSCVTGGTSCTGAA YSSGCAYGCSS YSCGCABGSSSYGCSCVTGGTSCTGAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: SBMGCCGSGSGYGCSCVTGGTSCTGAA YSSGCAYGCSS---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cCGCGGrCACG Original Motif Reverse Complement YSCGCABGSSSYGCSCVTGGTSCTGAA CGTGKCCGCGG CGBGBMCGCGGYGCSCVTGGTSCTGAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: YSCGCABGSSSYGCSCVTGGTSCTGAA CGTGKCCGCGG---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Reverse Complement Original Motif TTCAGSACCABGSGCKCCGCGRBCVCG VBBYCAAGGTCA VBBTCARGGYCABGSGCKCCGCGRBCVCG Direction: Forward Position #: 3 Overlap #: 10 Alignment: --TTCAGSACCABGSGCKCCGCGRBCVCG VBBYCAAGGTCA----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 25 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwCCAmAGTCmt CACTGTGrYrtCACAGTGswsCAcT Original Motif Original Motif DDCCAMAGTCHB CACTGTGRTRTCACAGTGSWSCACT CACTGTGRHDYCACAGTSBWSCACT Direction: Forward Position #: 9 Overlap #: 12 Alignment: --------DDCCAMAGTCHB----- CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Reverse Complement Original Motif AGTGSWBSACTGTGKHHMCACAGTG CAGTGCTCCACTGTGBT CAGTGCTCCACTGTGKHHMCACAGTG Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AGTGSWBSACTGTGKHHMCACAGTG CAGTGCTCCACTGTGBT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct Combined Motif Original Motif Original Motif CAGTGCTCCACTGTGKHHMCACAGTG CAHCACAGTGGAGCACT CAGTGCWCCACWGTGGAGCMMYAGTG Direction: Forward Position #: 6 Overlap #: 17 Alignment: CAGTGCTCCACTGTGKHHMCACAGTG -----CAHCACAGTGGAGCACT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement CAGTGCWCCACWGTGGAGCMMYAGTG ACTGTGACACCACAGTGGAGCACT ACYRKKRCACCACAGTGGAGCAMYAGTG Direction: Forward Position #: 3 Overlap #: 22 Alignment: --CAGTGCWCCACWGTGGAGCMMYAGTG ACTGTGACACCACAGTGGAGCACT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Reverse Complement ACYRKKRCACCACAGTGGAGCAMYAGTG TGMYCTTTGBCCK TGAYCKTTGCHCBACAGTGGAGCAMYAGTG Direction: Forward Position #: 3 Overlap #: 11 Alignment: --ACYRKKRCACCACAGTGGAGCAMYAGTG TGMYCTTTGBCCK----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement TGAYCKTTGCHCBACAGTGGAGCAMYAGTG CCACTGTGVTGTCACAGTGCTCCA BSACYGTKGTDYCACAGTGSWSCAMYAGTG Direction: Forward Position #: 1 Overlap #: 24 Alignment: TGAYCKTTGCHCBACAGTGGAGCAMYAGTG CCACTGTGVTGTCACAGTGCTCCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Reverse Complement Original Motif CACTMRTGSWSCACTGTGMHACYACMGTSB TTCAGCACCATGGACAGCKCC CACTMRTGSWSCACTGTKHCASCACMDTGGACAGCKCC Direction: Forward Position #: 18 Overlap #: 13 Alignment: CACTMRTGSWSCACTGTGMHACYACMGTSB-------- -----------------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement CACTMRTGSWSCACTGTKHCASCACMDTGGACAGCKCC GGAGCACTGTGACACCACA CACTMRTGGAGCACTGTGACASCACMDTGGACAGCKCC Direction: Forward Position #: 8 Overlap #: 19 Alignment: CACTMRTGSWSCACTGTKHCASCACMDTGGACAGCKCC -------GGAGCACTGTGACACCACA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR1 Reverse Complement Original Motif GGYGCTGTCCAHYGTGSTGTCACAGTGCTCCAMYAGTG VDBHMAGGTCACCCTGACCY GVHBCWGKYCAVYSTGVYSTCACAGTGCTCCAMYAGTG Direction: Forward Position #: 1 Overlap #: 20 Alignment: GGYGCTGTCCAHYGTGSTGTCACAGTGCTCCAMYAGTG VDBHMAGGTCACCCTGACCY------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 26 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAcCACAGTGGAGCAct AgTGCTCCACTGTGgTGTCACAgT Original Motif Reverse Complement CAHCACAGTGGAGCACT ACTGTGACACCACAGTGGAGCACT ACTGTGACACCACAGTGGAGCACT Direction: Forward Position #: 8 Overlap #: 17 Alignment: -------CAHCACAGTGGAGCACT ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Reverse Complement Reverse Complement AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGAMAMCACAGTG AGTGCTSCACTGTGVYRTCACAGTG Direction: Forward Position #: 1 Overlap #: 24 Alignment: AGTGCTCCACTGTGGTGTCACAGT- AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Reverse Complement AGTGCTSCACTGTGVYRTCACAGTG GGYGCTGTCCATGGTGCTGAA GGHGYKSTCCAYKGTGCTGHMACAGTG Direction: Forward Position #: 3 Overlap #: 19 Alignment: --AGTGCTSCACTGTGVYRTCACAGTG GGYGCTGTCCATGGTGCTGAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement GGHGYKSTCCAYKGTGCTGHMACAGTG GGAGCACTGTGACACCACA GGHGYGGWSCACTGTGMYRHCACAGTG Direction: Forward Position #: 6 Overlap #: 19 Alignment: GGHGYKSTCCAYKGTGCTGHMACAGTG -----GGAGCACTGTGACACCACA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement GGHGYGGWSCACTGTGMYRHCACAGTG BMSMGCCYMCTKSTGGMHM GBMGCGSMBCMYKGTGRYVHCACAGTG Direction: Forward Position #: 2 Overlap #: 19 Alignment: GGHGYGGWSCACTGTGMYRHCACAGTG -BMSMGCCYMCTKSTGGMHM------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Reverse Complement Reverse Complement CACTGTGHBKMCACRMRGBRSCGCYBC CCACTGTGVTGTCACAGTGCTCCA CCACTGTGBTGHCACAVDGSTSCRCYBC Direction: Forward Position #: 2 Overlap #: 23 Alignment: -CACTGTGHBKMCACRMRGBRSCGCYBC CCACTGTGVTGTCACAGTGCTCCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Original Motif Reverse Complement CCACTGTGBTGHCACAVDGSTSCRCYBC ABCACAGTGGAGCACTG ACCACWGTGGWGYMMYRVDGSTSCRCYBC Direction: Forward Position #: 2 Overlap #: 16 Alignment: -CCACTGTGBTGHCACAVDGSTSCRCYBC ABCACAGTGGAGCACTG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AmTGTGACACCACAGT Combined Motif Original Motif Reverse Complement ACCACWGTGGWGYMMYRVDGSTSCRCYBC ACTGTGGTGTCACART ACCACTGTGGTGTCACAVTGSTSCRCYBC Direction: Forward Position #: 4 Overlap #: 16 Alignment: ACCACWGTGGWGYMMYRVDGSTSCRCYBC ---ACTGTGGTGTCACART---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwCCAmAGTCmt Original Motif Reverse Complement ACCACTGTGGTGTCACAVTGSTSCRCYBC VDGACTRTGGDD AVSACTGTGGWGTCACAVTGSTSCRCYBC Direction: Forward Position #: 1 Overlap #: 12 Alignment: ACCACTGTGGTGTCACAVTGSTSCRCYBC VDGACTRTGGDD----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Original Motif Reverse Complement AVSACTGTGGWGTCACAVTGSTSCRCYBC TGMYCTTTGBCCK DBVMCTKTGGHBTCACAVTGSTSCRCYBC Direction: Forward Position #: 1 Overlap #: 13 Alignment: AVSACTGTGGWGTCACAVTGSTSCRCYBC TGMYCTTTGBCCK---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 27 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AgTGCTCCACTGTGgTGTCACAgT CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGAMAMCACAGTG ARKKGMKCMMYKKKRVWVYMMMRKK Direction: Forward Position #: 2 Overlap #: 24 Alignment: -AGTGCTCCACTGTGGTGTCACAGT AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGCACTGTGACAcCACAGTGg Combined Motif Original Motif Original Motif ARKKGMKCMMYKKKRVWVYMMMRKK TGGAGCACTGTGACAVCACAGTGG ARTGGAKCACTGTGACAVCACAGTGG Direction: Forward Position #: 3 Overlap #: 23 Alignment: ARKKGMKCMMYKKKRVWVYMMMRKK- --TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Original Motif ARTGGAKCACTGTGACAVCACAGTGG TTCAGCACCATGGACAGCKCC ARTGGAKCACTGTKDCAGCACMRTGGACAGCKCC Direction: Forward Position #: 14 Overlap #: 13 Alignment: ARTGGAKCACTGTGACAVCACAGTGG-------- -------------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TgTGgTGTCACAGTGCTCC Original Motif Original Motif ARTGGAKCACTGTKDCAGCACMRTGGACAGCKCC TGTGGTGTCACAGTGCTCC TGTRGTGKMDCASTGYTHCAGCACMRTGGACAGCKCC Direction: Forward Position #: 4 Overlap #: 16 Alignment: ---ARTGGAKCACTGTKDCAGCACMRTGGACAGCKCC TGTGGTGTCACAGTGCTCC------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Reverse Complement Original Motif GGYGCTGTCCAKRGTGCTGDAMCASTGDRRCACMACA YDRCCASYAGRKGGCRSYV GGYGCTGKCCABVRKGBKGBRVYASTGDRRCACMACA Direction: Forward Position #: 6 Overlap #: 19 Alignment: GGYGCTGTCCAKRGTGCTGDAMCASTGDRRCACMACA -----YDRCCASYAGRKGGCRSYV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CAcCACAGTGGAGCAct Reverse Complement Original Motif TGTRGTGKMDCASTKVKBCYBCYKVBTGGRCAGCKCC CAHCACAGTGGAGCACT CAHYRYAGTGKAGCASTKVKBCYBCYKVBTGGRCAGCKCC Direction: Forward Position #: 4 Overlap #: 14 Alignment: ---TGTRGTGKMDCASTKVKBCYBCYKVBTGGRCAGCKCC CAHCACAGTGGAGCACT----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Reverse Complement Original Motif GGYGCTGKCCABVRKGBKGBRVYASTGCTYCACTKKKDTG CAGTGCTCCACTGTGBT CRGTGCTSCMCWGTGKKBKGBRVYASTGCTYCACTKKKDTG Direction: Forward Position #: 2 Overlap #: 16 Alignment: -GGYGCTGKCCABVRKGBKGBRVYASTGCTYCACTKKKDTG CAGTGCTCCACTGTGBT------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AmTGTGACACCACAGT Combined Motif Reverse Complement Reverse Complement CAHYRYAGTGKAGCASTKVKBCYBRYCACWGYGSAGCACKG ACTGTGGTGTCACART CACTRTRGTGTMACAVTKVKBCYBRYCACWGYGSAGCACKG Direction: Forward Position #: 2 Overlap #: 16 Alignment: CAHYRYAGTGKAGCASTKVKBCYBRYCACWGYGSAGCACKG -ACTGTGGTGTCACART------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Original Motif Reverse Complement CACTRTRGTGTMACAVTKVKBCYBRYCACWGYGSAGCACKG MGGTCAGGGTGACCTRDBHV CAVKDYAGKGTSACMBDGVBVCYBRYCACWGYGSAGCACKG Direction: Forward Position #: 2 Overlap #: 20 Alignment: CACTRTRGTGTMACAVTKVKBCYBRYCACWGYGSAGCACKG -MGGTCAGGGTGACCTRDBHV-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Original Motif Reverse Complement CAVKDYAGKGTSACMBDGVBVCYBRYCACWGYGSAGCACKG BAGGYCABHBTGACCKHV CAGGBCABBGTGACCKDDVBVCYBRYCACWGYGSAGCACKG Direction: Forward Position #: 1 Overlap #: 18 Alignment: CAVKDYAGKGTSACMBDGVBVCYBRYCACWGYGSAGCACKG BAGGYCABHBTGACCKHV----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 28 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGCkTGCssk gCGCGCsCgsG Original Motif Original Motif SSGCKTGCSSK GCGCGCSCGCG SCGCGYGCSSG Direction: Backward Position #: 1 Overlap #: 11 Alignment: SSGCKTGCSSK GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk Combined Motif Reverse Complement Original Motif CSSGCKCGCGS SBCCCCGCCSBB CSSSCBCGCSSBB Direction: Forward Position #: 2 Overlap #: 10 Alignment: CSSGCKCGCGS-- -SBCCCCGCCSBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Reverse Complement Original Motif BBSSGCGBGSSSG BSCCCCGCGBS BBSCSCGCGSSSG Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBSSGCGBGSSSG BSCCCCGCGBS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cCGCGGrCACG Combined Motif Original Motif Original Motif BBSCSCGCGSSSG CCGCGGRCACG BBSCGCGSGCRCG Direction: Forward Position #: 3 Overlap #: 11 Alignment: BBSCSCGCGSSSG --CCGCGGRCACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCF Combined Motif Original Motif Reverse Complement BBSCGCGSGCRCG BMSMGCCYMCTKSTGGMHM BBBCGCGCSCMCKKSTGGMHM Direction: Forward Position #: 3 Overlap #: 11 Alignment: BBSCGCGSGCRCG-------- --BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Esrrb Reverse Complement Reverse Complement YDRCCASYRGYGSGCGCGBBB TGACCTTGMBBB TGACCWYBRGBBSGCGCGBBB Direction: Forward Position #: 1 Overlap #: 12 Alignment: YDRCCASYRGYGSGCGCGBBB TGACCTTGMBBB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ESR2 Original Motif Original Motif TGACCWYBRGBBSGCGCGBBB VHRGGTCABDBTGMCCTB VHDGRYCABBVKBVCSYGCGBBB Direction: Forward Position #: 3 Overlap #: 16 Alignment: --TGACCWYBRGBBSGCGCGBBB VHRGGTCABDBTGMCCTB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Original Motif VHDGRYCABBVKBVCSYGCGBBB TTCAGCACCATGGACAGCKCC VDTSRSCACCDTGGMCMGCDBCB Direction: Forward Position #: 2 Overlap #: 21 Alignment: VHDGRYCABBVKBVCSYGCGBBB -TTCAGCACCATGGACAGCKCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PPARGRXRA Combined Motif Original Motif Reverse Complement VDTSRSCACCDTGGMCMGCDBCB TGRCCTKTGHCCKAB VDTSWGMMCYDTGVMCDRSDBCB Direction: Forward Position #: 5 Overlap #: 15 Alignment: VDTSRSCACCDTGGMCMGCDBCB ----TGRCCTKTGHCCKAB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HNF4A Reverse Complement Original Motif BGBHSMDGRVCADMGYRCWSADV RGGBCAAAGKYCA VGBBSAARGBYMAMGYRCWSADV Direction: Forward Position #: 1 Overlap #: 13 Alignment: BGBHSMDGRVCADMGYRCWSADV RGGBCAAAGKYCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 29 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cCGCGGrCACG gCGCGCsCgsG Original Motif Original Motif CCGCGGRCACG GCGCGCSCGCG SCGCGSRCRCG Direction: Backward Position #: 1 Overlap #: 11 Alignment: CCGCGGRCACG GCGCGCSCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Reverse Complement Original Motif CGKGMSCGCGS TTCAGCACCATGGACAGCKCC CMBGGASMGCGSTTCAGCACC Direction: Backward Position #: 2 Overlap #: 11 Alignment: ---------CGKGMSCGCGS- TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 30 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- taaacgatgcc NR1H2RXRA Reverse Complement Original Motif GGCATCGTTTA AAAGGTCAAAGGTCAAC CAACRGSWYMRWKKWAA Direction: Backward Position #: 5 Overlap #: 11 Alignment: --GGCATCGTTTA---- AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif NR2F1 Reverse Complement Original Motif TTWYYWMYKWSCMGTTG TGAMCTTTGMMCYT TKACCTYTGHVCMKTTG Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTWYYWMYKWSCMGTTG TGAMCTTTGMMCYT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- atactttggc Combined Motif Original Motif Original Motif TKACCTYTGHVCMKTTG ATACTTTGGC TKACCTYTGATMCTTTGGC Direction: Forward Position #: 10 Overlap #: 8 Alignment: TKACCTYTGHVCMKTTG-- ---------ATACTTTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ctatacggacg Combined Motif Original Motif Reverse Complement TKACCTYTGATMCTTTGGC CGTCCGTATAG TKACCTYTGATMCTTYGKCCGTATAG Direction: Forward Position #: 16 Overlap #: 4 Alignment: TKACCTYTGATMCTTTGGC------- ---------------CGTCCGTATAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AgTGCTCCACTGTGgTGTCACAgT Combined Motif Original Motif Reverse Complement TKACCTYTGATMCTTYGKCCGTATAG ACTGTGACACCACAGTGGAGCACT TKACCTYTGATACTKTGDCMSYAYAGTGGAGCACT Direction: Forward Position #: 12 Overlap #: 15 Alignment: TKACCTYTGATMCTTYGKCCGTATAG--------- -----------ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AmTGTGACACCACAGT Reverse Complement Original Motif AGTGCTCCACTMTMSRGDCARAGTATCAMAGGTYA AMTGTGACACCACAGT AVTGYKMCACYAYASDGDCARAGTATCAMAGGTYA Direction: Forward Position #: 1 Overlap #: 16 Alignment: AGTGCTCCACTMTMSRGDCARAGTATCAMAGGTYA AMTGTGACACCACAGT------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cCGCGGrCACG Combined Motif Original Motif Reverse Complement AVTGYKMCACYAYASDGDCARAGTATCAMAGGTYA CGTGKCCGCGG AVTGYKMCACYAYMGTGKCMGMGKATCAMAGGTYA Direction: Forward Position #: 14 Overlap #: 11 Alignment: AVTGYKMCACYAYASDGDCARAGTATCAMAGGTYA -------------CGTGKCCGCGG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- srACyCCGAyr Combined Motif Reverse Complement Original Motif TKACCTYTGATRCRCRGRCACRMTMGTGYRMCAVT SRACYCCGAYR TSAACYCYGAYRCRCRGRCACRMTMGTGYRMCAVT Direction: Forward Position #: 2 Overlap #: 11 Alignment: TKACCTYTGATRCRCRGRCACRMTMGTGYRMCAVT -SRACYCCGAYR----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Original Motif Original Motif TSAACYCYGAYRCRCRGRCACRMTMGTGYRMCAVT YDRCCASYAGRKGGCRSYV TBRMCWCYRRDDSGCRSDCACRMTMGTGYRMCAVT Direction: Forward Position #: 1 Overlap #: 19 Alignment: TSAACYCYGAYRCRCRGRCACRMTMGTGYRMCAVT YDRCCASYAGRKGGCRSYV---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CagTGCTCCACTGTGgT Reverse Complement Original Motif AVTGYKMCACYAYMGTGDSMGCSHHMKKGWGRKBA CAGTGCTCCACTGTGBT CAGTGCTCCACTRTSGTGDSMGCSHHMKKGWGRKBA Direction: Forward Position #: 2 Overlap #: 16 Alignment: -AVTGYKMCACYAYMGTGDSMGCSHHMKKGWGRKBA CAGTGCTCCACTGTGBT------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 31 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ctatacggacg srACyCCGAyr Original Motif Original Motif CTATACGGACG SRACYCCGAYR CDAYHCSGACG Direction: Backward Position #: 1 Overlap #: 11 Alignment: CTATACGGACG SRACYCCGAYR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif taaacgatgcc Original Motif Original Motif CDAYHCSGACG TAAACGATGCC TAAACGATDCCGACG Direction: Forward Position #: 5 Overlap #: 7 Alignment: ----CDAYHCSGACG TAAACGATGCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Combined Motif Original Motif Reverse Complement TAAACGATDCCGACG GCGGACGTTV TAAACGATGCSGACGTTV Direction: Forward Position #: 9 Overlap #: 7 Alignment: TAAACGATDCCGACG--- --------GCGGACGTTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif atactttggc Reverse Complement Original Motif BAACGTCSGCATCGTTTA ATACTTTGGC ATACKTYGGCATCGTTTA Direction: Forward Position #: 1 Overlap #: 10 Alignment: BAACGTCSGCATCGTTTA ATACTTTGGC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cCGCGGrCACG Original Motif Reverse Complement ATACKTYGGCATCGTTTA CGTGKCCGCGG CGCGGSGYRTCATACKTYGGCAT Direction: Backward Position #: 6 Overlap #: 6 Alignment: ATACKTYGGCATCGTTTA----- ------------CGTGKCCGCGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 32 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- gCGCGCsCgsG cCGCGGrCACG Original Motif Original Motif GCGCGCSCGCG CCGCGGRCACG SCGCGSRCRCG Direction: Backward Position #: 1 Overlap #: 11 Alignment: GCGCGCSCGCG CCGCGGRCACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssGCkTGCssk Reverse Complement Reverse Complement CGKGMSCGCGS YSSGCAYGCSS CSBGCRCGCGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: CGKGMSCGCGS YSSGCAYGCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sscCCCGCGcs Original Motif Reverse Complement CSBGCRCGCGS SBCGCGGGGSB CSCGCGSGSGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: CSBGCRCGCGS SBCGCGGGGSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCCCCGCSssk Combined Motif Original Motif Original Motif CSCGCGSGSGS SBCCCCGCCSBB CSSSCSCGCSSBB Direction: Forward Position #: 2 Overlap #: 10 Alignment: CSCGCGSGSGS-- -SBCCCCGCCSBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CTCF Reverse Complement Reverse Complement BBSSGCGSGSSSG BMSMGCCYMCTKSTGGMHM BVSSGCSBSCKBGTGGMHM Direction: Forward Position #: 1 Overlap #: 13 Alignment: BBSSGCGSGSSSG------ BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR1 Combined Motif Reverse Complement Original Motif YDRCCACBRGSBSGCSSVV VDBHMAGGTCACCCTGACCY YDRCCVCHAGGKSRCVSTGACCY Direction: Forward Position #: 4 Overlap #: 16 Alignment: YDRCCACBRGSBSGCSSVV---- ---VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Combined Motif Original Motif Reverse Complement YDRCCVCHAGGKSRCVSTGACCY GCGGACGTTV ACCYGSGGACGTTVYDRCCVCHA Direction: Backward Position #: 5 Overlap #: 10 Alignment: YDRCCVCHAGGKSRCVSTGACCY ---------GCGGACGTTV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 33 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- srACyCCGAyr ESR1 Reverse Complement Reverse Complement KKTCGGKGTKS MGGTCAGGGTGACCTRDBHV CCTRDBHVKGTCRGKGTGVM Direction: Backward Position #: 9 Overlap #: 11 Alignment: -KKTCGGKGTKS-------- MGGTCAGGGTGACCTRDBHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TGGAGCACTGTGACAcCACAGTGg Original Motif Reverse Complement CCTRDBHVKGTCRGKGTGVM CCACTGTGVTGTCACAGTGCTCCA CCMYTGTVVKGTCASDGTGCWCCA Direction: Forward Position #: 2 Overlap #: 20 Alignment: -CCTRDBHVKGTCRGKGTGVM--- CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ESR2 Combined Motif Reverse Complement Original Motif TGGWGCACDSTGACRVVACAKYGG VHRGGTCABDBTGMCCTB TGGWGCAVKGTSACRBYRMHBYGG Direction: Forward Position #: 6 Overlap #: 18 Alignment: TGGWGCACDSTGACRVVACAKYGG -----VHRGGTCABDBTGMCCTB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TgTGgTGTCACAGTGCTCC Combined Motif Original Motif Reverse Complement TGGWGCAVKGTSACRBYRMHBYGG GGAGCACTGTGACACCACA TGGAGCACTGTGACABYACABYGG Direction: Forward Position #: 2 Overlap #: 19 Alignment: TGGWGCAVKGTSACRBYRMHBYGG -GGAGCACTGTGACACCACA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACTGTGrYrtCACAGTGswsCAcT Original Motif Reverse Complement TGGAGCACTGTGACABYACABYGG AGTGSWSCACTGTGAMAMCACAGTG AGTGGAGCACTGTGACAVCACASTGG Direction: Forward Position #: 3 Overlap #: 23 Alignment: --TGGAGCACTGTGACABYACABYGG AGTGSWSCACTGTGAMAMCACAGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- REST Combined Motif Original Motif Original Motif AGTGGAGCACTGTGACAVCACASTGG TTCAGCACCATGGACAGCKCC AGTGGAGCACTGTKWCAGCACMVTGGACAGCKCC Direction: Forward Position #: 14 Overlap #: 13 Alignment: AGTGGAGCACTGTGACAVCACASTGG-------- -------------TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-18-2018 13:12:37 Runtime: 641.554 seconds MOTIFSIM is written by Ngoc Tam L. 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