**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # PScanChIP_DM05.txt 16 1 RSAT_peak-motifs_DM05.txt 17 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches in Database for Each Motif (Highest to Lowest) ***************************************************************** Dataset #: 1 Motif ID: 4 Motif name: Esrrb Original motif 0.290198 0.220264 0.271200 0.218337 0.184941 0.227810 0.376477 0.210772 0.115226 0.332236 0.331687 0.220850 0.070959 0.342466 0.122740 0.463836 0.084862 0.729264 0.171640 0.014235 0.909737 0.008753 0.067834 0.013676 0.975656 0.000547 0.016411 0.007385 0.008758 0.001368 0.981390 0.008484 0.005750 0.003286 0.986309 0.004655 0.049904 0.012613 0.066904 0.870579 0.002473 0.927473 0.046703 0.023352 0.951569 0.005504 0.035498 0.007430 Consensus sequence: VBBYCAAGGTCA Reserve complement motif 0.007430 0.005504 0.035498 0.951569 0.002473 0.046703 0.927473 0.023352 0.870579 0.012613 0.066904 0.049904 0.005750 0.986309 0.003286 0.004655 0.008758 0.981390 0.001368 0.008484 0.007385 0.000547 0.016411 0.975656 0.013676 0.008753 0.067834 0.909737 0.084862 0.171640 0.729264 0.014235 0.463836 0.342466 0.122740 0.070959 0.115226 0.331687 0.332236 0.220850 0.184941 0.376477 0.227810 0.210772 0.218337 0.220264 0.271200 0.290198 Consensus sequence: TGACCTTGMBBB ************************************************************************ Best Matches for Motif ID 4 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Reverse Complement Reverse Complement Forward 6 12 0.000000 Species: Mus musculus Original motif 0.212524 0.177958 0.293723 0.315796 0.420838 0.283140 0.144938 0.151084 0.198119 0.196347 0.260353 0.345181 0.117752 0.282184 0.137207 0.462857 0.070125 0.781439 0.138093 0.010344 0.965989 0.000956 0.023828 0.009227 0.977263 0.003066 0.019255 0.000416 0.007404 0.000267 0.938934 0.053395 0.007147 0.000287 0.983377 0.009190 0.039608 0.000730 0.040682 0.918981 0.000685 0.905345 0.021930 0.072040 0.800961 0.001126 0.195791 0.002121 0.245039 0.241263 0.038084 0.475614 0.265397 0.238316 0.304963 0.191325 0.203742 0.286208 0.231002 0.279048 0.194132 0.188854 0.346693 0.270322 0.310711 0.263840 0.184317 0.241132 Consensus sequence: DHDBCAAGGTCAHVBDH Reverse complement motif 0.241132 0.263840 0.184317 0.310711 0.194132 0.346693 0.188854 0.270322 0.203742 0.231002 0.286208 0.279048 0.265397 0.304963 0.238316 0.191325 0.475614 0.241263 0.038084 0.245039 0.002121 0.001126 0.195791 0.800961 0.000685 0.021930 0.905345 0.072040 0.918981 0.000730 0.040682 0.039608 0.007147 0.983377 0.000287 0.009190 0.007404 0.938934 0.000267 0.053395 0.000416 0.003066 0.019255 0.977263 0.009227 0.000956 0.023828 0.965989 0.070125 0.138093 0.781439 0.010344 0.462857 0.282184 0.137207 0.117752 0.345181 0.196347 0.260353 0.198119 0.151084 0.283140 0.144938 0.420838 0.315796 0.177958 0.293723 0.212524 Consensus sequence: HHBVHTGACCTTGVDHD Alignment: HHBVHTGACCTTGVDHD -----TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_primary Original Motif Original Motif Backward 5 12 0.020547 Species: Mus musculus Original motif 0.253408 0.181904 0.273186 0.291502 0.262827 0.381870 0.153734 0.201569 0.143383 0.243233 0.242562 0.370823 0.247498 0.336892 0.176114 0.239496 0.856654 0.037068 0.049492 0.056786 0.797369 0.012935 0.176463 0.013233 0.808222 0.001309 0.189796 0.000674 0.002583 0.000536 0.989167 0.007714 0.002421 0.000283 0.972777 0.024519 0.000270 0.003650 0.019038 0.977041 0.000184 0.956654 0.005329 0.037833 0.925587 0.000706 0.072434 0.001273 0.307028 0.327297 0.079126 0.286549 0.238576 0.245847 0.384025 0.131552 0.281599 0.234987 0.226211 0.257204 0.211511 0.212695 0.363980 0.211815 Consensus sequence: DHBHAAAGGTCAHVHB Reverse complement motif 0.211511 0.363980 0.212695 0.211815 0.257204 0.234987 0.226211 0.281599 0.238576 0.384025 0.245847 0.131552 0.307028 0.079126 0.327297 0.286549 0.001273 0.000706 0.072434 0.925587 0.000184 0.005329 0.956654 0.037833 0.977041 0.003650 0.019038 0.000270 0.002421 0.972777 0.000283 0.024519 0.002583 0.989167 0.000536 0.007714 0.000674 0.001309 0.189796 0.808222 0.013233 0.012935 0.176463 0.797369 0.056786 0.037068 0.049492 0.856654 0.247498 0.176114 0.336892 0.239496 0.370823 0.243233 0.242562 0.143383 0.262827 0.153734 0.381870 0.201569 0.291502 0.181904 0.273186 0.253408 Consensus sequence: BHVDTGACCTTTDVDD Alignment: DHBHAAAGGTCAHVHB VBBYCAAGGTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Original Motif Original Motif Backward 5 12 0.021437 Species: Mus musculus Original motif 0.222478 0.177331 0.266395 0.333797 0.276222 0.360097 0.118354 0.245327 0.106047 0.268455 0.234217 0.391281 0.244163 0.407141 0.146864 0.201832 0.852083 0.050643 0.039941 0.057332 0.814108 0.012894 0.165984 0.007015 0.905198 0.005648 0.088378 0.000776 0.002783 0.000555 0.988205 0.008457 0.001289 0.000626 0.898209 0.099877 0.002878 0.001631 0.008910 0.986582 0.000499 0.975550 0.005264 0.018687 0.963627 0.000883 0.034432 0.001058 0.181490 0.517766 0.077094 0.223650 0.183789 0.384790 0.308350 0.123071 0.229801 0.228801 0.224468 0.316930 0.218244 0.170273 0.366746 0.244736 Consensus sequence: DHBHAAAGGTCACVHD Reverse complement motif 0.218244 0.366746 0.170273 0.244736 0.316930 0.228801 0.224468 0.229801 0.183789 0.308350 0.384790 0.123071 0.181490 0.077094 0.517766 0.223650 0.001058 0.000883 0.034432 0.963627 0.000499 0.005264 0.975550 0.018687 0.986582 0.001631 0.008910 0.002878 0.001289 0.898209 0.000626 0.099877 0.002783 0.988205 0.000555 0.008457 0.000776 0.005648 0.088378 0.905198 0.007015 0.012894 0.165984 0.814108 0.057332 0.050643 0.039941 0.852083 0.244163 0.146864 0.407141 0.201832 0.391281 0.268455 0.234217 0.106047 0.276222 0.118354 0.360097 0.245327 0.333797 0.177331 0.266395 0.222478 Consensus sequence: HHVGTGACCTTTDVDD Alignment: DHBHAAAGGTCACVHD VBBYCAAGGTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_secondary Reverse Complement Reverse Complement Forward 5 12 0.043076 Species: Mus musculus Original motif 0.195749 0.435700 0.196915 0.171636 0.131070 0.131912 0.417834 0.319184 0.238959 0.441529 0.174973 0.144539 0.187749 0.189727 0.405849 0.216675 0.006751 0.541370 0.182092 0.269787 0.005388 0.590608 0.339869 0.064135 0.088153 0.004666 0.902351 0.004830 0.002459 0.004278 0.982637 0.010626 0.003618 0.002504 0.985275 0.008602 0.003325 0.004017 0.009244 0.983414 0.002547 0.972864 0.005345 0.019244 0.940260 0.002927 0.053632 0.003181 0.222459 0.390569 0.251497 0.135475 0.151824 0.258444 0.332866 0.256865 0.175811 0.290583 0.232086 0.301520 0.356690 0.198973 0.136050 0.308287 Consensus sequence: VBVBCSGGGTCAVBBH Reverse complement motif 0.308287 0.198973 0.136050 0.356690 0.301520 0.290583 0.232086 0.175811 0.151824 0.332866 0.258444 0.256865 0.222459 0.251497 0.390569 0.135475 0.003181 0.002927 0.053632 0.940260 0.002547 0.005345 0.972864 0.019244 0.983414 0.004017 0.009244 0.003325 0.003618 0.985275 0.002504 0.008602 0.002459 0.982637 0.004278 0.010626 0.088153 0.902351 0.004666 0.004830 0.005388 0.339869 0.590608 0.064135 0.006751 0.182092 0.541370 0.269787 0.187749 0.405849 0.189727 0.216675 0.238959 0.174973 0.441529 0.144539 0.131070 0.417834 0.131912 0.319184 0.195749 0.196915 0.435700 0.171636 Consensus sequence: HVBVTGACCCSGBVBV Alignment: HVBVTGACCCSGBVBV ----TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_primary Original Motif Original Motif Forward 1 12 0.045178 Species: Mus musculus Original motif 0.223704 0.280688 0.251889 0.243719 0.198683 0.190981 0.267970 0.342366 0.150012 0.319579 0.206063 0.324347 0.274896 0.302572 0.238597 0.183935 0.438853 0.331148 0.021186 0.208812 0.133937 0.027342 0.832490 0.006231 0.141462 0.002336 0.854359 0.001843 0.003464 0.000753 0.987433 0.008349 0.004388 0.000692 0.884494 0.110426 0.003808 0.001605 0.016793 0.977794 0.001992 0.976605 0.003739 0.017664 0.881237 0.089981 0.026017 0.002764 0.735041 0.106592 0.083260 0.075107 0.164419 0.315518 0.181031 0.339032 0.228285 0.176364 0.157583 0.437768 0.233407 0.193567 0.327076 0.245951 0.320479 0.312566 0.195701 0.171254 Consensus sequence: BDBVMGGGGTCAABHDV Reverse complement motif 0.171254 0.312566 0.195701 0.320479 0.233407 0.327076 0.193567 0.245951 0.437768 0.176364 0.157583 0.228285 0.339032 0.315518 0.181031 0.164419 0.075107 0.106592 0.083260 0.735041 0.002764 0.089981 0.026017 0.881237 0.001992 0.003739 0.976605 0.017664 0.977794 0.001605 0.016793 0.003808 0.004388 0.884494 0.000692 0.110426 0.003464 0.987433 0.000753 0.008349 0.141462 0.854359 0.002336 0.001843 0.133937 0.832490 0.027342 0.006231 0.208812 0.331148 0.021186 0.438853 0.274896 0.238597 0.302572 0.183935 0.324347 0.319579 0.206063 0.150012 0.342366 0.190981 0.267970 0.198683 0.223704 0.251889 0.280688 0.243719 Consensus sequence: BHHVTTGACCCCYVVDB Alignment: BDBVMGGGGTCAABHDV VBBYCAAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Original Motif Backward 6 12 0.048250 Species: Mus musculus Original motif 0.252126 0.268706 0.351590 0.127578 0.158171 0.083434 0.389646 0.368749 0.180010 0.290882 0.279192 0.249916 0.206905 0.249360 0.275438 0.268296 0.756588 0.046202 0.023921 0.173289 0.018262 0.022596 0.949143 0.010000 0.206468 0.046491 0.745475 0.001566 0.005511 0.001141 0.983152 0.010196 0.004791 0.001893 0.985951 0.007365 0.027643 0.001133 0.008565 0.962659 0.002459 0.970934 0.007826 0.018780 0.924387 0.003164 0.071225 0.001224 0.419387 0.230189 0.111588 0.238836 0.290954 0.163823 0.341233 0.203991 0.196768 0.281307 0.313868 0.208056 0.128428 0.260428 0.378607 0.232537 0.269305 0.378895 0.123480 0.228320 Consensus sequence: VKBBAGGGGTCAHDBBH Reverse complement motif 0.269305 0.123480 0.378895 0.228320 0.128428 0.378607 0.260428 0.232537 0.196768 0.313868 0.281307 0.208056 0.290954 0.341233 0.163823 0.203991 0.238836 0.230189 0.111588 0.419387 0.001224 0.003164 0.071225 0.924387 0.002459 0.007826 0.970934 0.018780 0.962659 0.001133 0.008565 0.027643 0.004791 0.985951 0.001893 0.007365 0.005511 0.983152 0.001141 0.010196 0.206468 0.745475 0.046491 0.001566 0.018262 0.949143 0.022596 0.010000 0.173289 0.046202 0.023921 0.756588 0.206905 0.275438 0.249360 0.268296 0.180010 0.279192 0.290882 0.249916 0.158171 0.389646 0.083434 0.368749 0.252126 0.351590 0.268706 0.127578 Consensus sequence: DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH VBBYCAAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Reverse Complement Original Motif Backward 1 12 0.049902 Species: Mus musculus Original motif 0.235299 0.222264 0.237416 0.305021 0.144778 0.278902 0.341673 0.234648 0.261127 0.261904 0.191591 0.285378 0.119943 0.410774 0.218940 0.250343 0.222672 0.075554 0.365253 0.336521 0.001838 0.046904 0.002828 0.948430 0.030410 0.006359 0.960821 0.002410 0.987391 0.007562 0.002810 0.002237 0.105188 0.888650 0.001163 0.004998 0.006475 0.987074 0.001793 0.004659 0.001816 0.765138 0.003092 0.229953 0.010354 0.846496 0.029899 0.113251 0.328732 0.039382 0.265510 0.366377 0.209638 0.262628 0.145613 0.382121 0.385390 0.177695 0.299828 0.137087 0.403452 0.268924 0.096028 0.231595 0.203082 0.231812 0.213520 0.351585 Consensus sequence: DBHBDTGACCCCDHVHB Reverse complement motif 0.351585 0.231812 0.213520 0.203082 0.231595 0.268924 0.096028 0.403452 0.137087 0.177695 0.299828 0.385390 0.382121 0.262628 0.145613 0.209638 0.366377 0.039382 0.265510 0.328732 0.010354 0.029899 0.846496 0.113251 0.001816 0.003092 0.765138 0.229953 0.006475 0.001793 0.987074 0.004659 0.105188 0.001163 0.888650 0.004998 0.002237 0.007562 0.002810 0.987391 0.030410 0.960821 0.006359 0.002410 0.948430 0.046904 0.002828 0.001838 0.222672 0.365253 0.075554 0.336521 0.119943 0.218940 0.410774 0.250343 0.285378 0.261904 0.191591 0.261127 0.144778 0.341673 0.278902 0.234648 0.305021 0.222264 0.237416 0.235299 Consensus sequence: VHBHDGGGGTCAHBHBD Alignment: VHBHDGGGGTCAHBHBD -----TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Reverse Complement Forward 8 12 0.052535 Species: Mus musculus Original motif 0.331499 0.188505 0.182841 0.297156 0.328961 0.213025 0.273530 0.184484 0.197213 0.129292 0.524914 0.148581 0.274491 0.226406 0.312118 0.186986 0.103231 0.393726 0.364988 0.138055 0.552594 0.166422 0.186262 0.094722 0.157618 0.064773 0.616497 0.161112 0.139166 0.176098 0.621185 0.063551 0.748420 0.062398 0.012447 0.176735 0.116584 0.009438 0.860326 0.013653 0.005030 0.003646 0.974877 0.016447 0.055257 0.007181 0.921760 0.015802 0.032748 0.058249 0.052709 0.856293 0.105606 0.872231 0.014370 0.007793 0.019480 0.497379 0.125899 0.357242 0.478582 0.269713 0.061464 0.190242 0.253985 0.287006 0.201320 0.257689 0.319384 0.210231 0.175842 0.294543 0.222123 0.287802 0.201294 0.288782 0.139951 0.376041 0.081133 0.402875 0.213450 0.343835 0.383676 0.059039 0.322294 0.355918 0.148062 0.173725 Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Reverse complement motif 0.322294 0.148062 0.355918 0.173725 0.213450 0.383676 0.343835 0.059039 0.402875 0.376041 0.081133 0.139951 0.288782 0.287802 0.201294 0.222123 0.294543 0.210231 0.175842 0.319384 0.253985 0.201320 0.287006 0.257689 0.190242 0.269713 0.061464 0.478582 0.019480 0.125899 0.497379 0.357242 0.105606 0.014370 0.872231 0.007793 0.856293 0.058249 0.052709 0.032748 0.055257 0.921760 0.007181 0.015802 0.005030 0.974877 0.003646 0.016447 0.116584 0.860326 0.009438 0.013653 0.176735 0.062398 0.012447 0.748420 0.139166 0.621185 0.176098 0.063551 0.157618 0.616497 0.064773 0.161112 0.094722 0.166422 0.186262 0.552594 0.103231 0.364988 0.393726 0.138055 0.274491 0.312118 0.226406 0.186986 0.197213 0.524914 0.129292 0.148581 0.184484 0.213025 0.273530 0.328961 0.297156 0.188505 0.182841 0.331499 Consensus sequence: DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH -------TGACCTTGMBBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_secondary Reverse Complement Reverse Complement Forward 5 12 0.058055 Species: Mus musculus Original motif 0.131680 0.169949 0.346277 0.352094 0.109910 0.144258 0.373681 0.372151 0.196671 0.411335 0.159689 0.232305 0.311086 0.307077 0.122332 0.259505 0.895155 0.013238 0.038874 0.052733 0.779629 0.018399 0.171269 0.030703 0.950546 0.002649 0.041825 0.004980 0.004769 0.002646 0.985847 0.006739 0.004458 0.002117 0.012011 0.981414 0.016789 0.969626 0.003890 0.009695 0.002468 0.982852 0.004754 0.009926 0.891448 0.003193 0.097548 0.007811 0.513330 0.308971 0.070467 0.107232 0.179371 0.115514 0.130898 0.574217 0.285826 0.277536 0.166982 0.269655 0.319407 0.227783 0.129020 0.323790 Consensus sequence: BBHHAAAGTCCAMTHH Reverse complement motif 0.323790 0.227783 0.129020 0.319407 0.269655 0.277536 0.166982 0.285826 0.574217 0.115514 0.130898 0.179371 0.107232 0.308971 0.070467 0.513330 0.007811 0.003193 0.097548 0.891448 0.002468 0.004754 0.982852 0.009926 0.016789 0.003890 0.969626 0.009695 0.981414 0.002117 0.012011 0.004458 0.004769 0.985847 0.002646 0.006739 0.004980 0.002649 0.041825 0.950546 0.030703 0.018399 0.171269 0.779629 0.052733 0.013238 0.038874 0.895155 0.259505 0.307077 0.122332 0.311086 0.196671 0.159689 0.411335 0.232305 0.109910 0.373681 0.144258 0.372151 0.352094 0.169949 0.346277 0.131680 Consensus sequence: HHAYTGGACTTTHDBV Alignment: HHAYTGGACTTTHDBV ----TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Reverse Complement Reverse Complement Forward 9 12 0.060974 Species: Mus musculus Original motif 0.314514 0.275352 0.257617 0.152518 0.126939 0.598294 0.130576 0.144192 0.102265 0.155334 0.177957 0.564445 0.129288 0.282678 0.326990 0.261044 0.318166 0.227823 0.175681 0.278330 0.109019 0.380838 0.278328 0.231815 0.226145 0.289206 0.291300 0.193348 0.035863 0.844339 0.072582 0.047216 0.223793 0.187244 0.088092 0.500871 0.039800 0.029681 0.026201 0.904317 0.298298 0.032147 0.654746 0.014809 0.014729 0.022023 0.944826 0.018422 0.485114 0.004925 0.013785 0.496176 0.035708 0.020381 0.240804 0.703108 0.951152 0.012738 0.017886 0.018224 0.023713 0.944394 0.009538 0.022355 0.291067 0.385205 0.232388 0.091339 0.340334 0.199588 0.311526 0.148552 0.198713 0.472138 0.178319 0.150830 0.321155 0.269932 0.311301 0.097612 0.412646 0.195252 0.231950 0.160152 0.297134 0.180928 0.250400 0.271538 0.151169 0.305386 0.358574 0.184871 Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Reverse complement motif 0.151169 0.358574 0.305386 0.184871 0.271538 0.180928 0.250400 0.297134 0.160152 0.195252 0.231950 0.412646 0.097612 0.269932 0.311301 0.321155 0.198713 0.178319 0.472138 0.150830 0.148552 0.199588 0.311526 0.340334 0.291067 0.232388 0.385205 0.091339 0.023713 0.009538 0.944394 0.022355 0.018224 0.012738 0.017886 0.951152 0.703108 0.020381 0.240804 0.035708 0.496176 0.004925 0.013785 0.485114 0.014729 0.944826 0.022023 0.018422 0.298298 0.654746 0.032147 0.014809 0.904317 0.029681 0.026201 0.039800 0.500871 0.187244 0.088092 0.223793 0.035863 0.072582 0.844339 0.047216 0.226145 0.291300 0.289206 0.193348 0.109019 0.278328 0.380838 0.231815 0.278330 0.227823 0.175681 0.318166 0.129288 0.326990 0.282678 0.261044 0.564445 0.155334 0.177957 0.102265 0.126939 0.130576 0.598294 0.144192 0.152518 0.275352 0.257617 0.314514 Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB --------TGACCTTGMBBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 5 Motif name: ZEB1 Original motif 0.024390 0.829268 0.024390 0.121951 0.926829 0.000000 0.048780 0.024390 0.000000 0.975610 0.024390 0.000000 0.000000 0.926829 0.073171 0.000000 0.000000 0.024390 0.000000 0.975610 0.243902 0.024390 0.390244 0.341463 Consensus sequence: CACCTD Reserve complement motif 0.243902 0.390244 0.024390 0.341463 0.975610 0.024390 0.000000 0.000000 0.000000 0.073171 0.926829 0.000000 0.000000 0.024390 0.975610 0.000000 0.024390 0.000000 0.048780 0.926829 0.024390 0.024390 0.829268 0.121951 Consensus sequence: HAGGTG ************************************************************************ Best Matches for Motif ID 5 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_secondary Original Motif Reverse Complement Backward 4 6 0.000000 Species: Mus musculus Original motif 0.253642 0.252604 0.298295 0.195458 0.112892 0.341342 0.341061 0.204704 0.297430 0.215095 0.343350 0.144125 0.241098 0.129378 0.421448 0.208076 0.894201 0.007299 0.061032 0.037468 0.052259 0.054303 0.856609 0.036829 0.005074 0.015048 0.966734 0.013144 0.003258 0.061529 0.002368 0.932845 0.017531 0.005025 0.973155 0.004289 0.116022 0.030172 0.047139 0.806667 0.027749 0.602513 0.009946 0.359792 0.018763 0.048982 0.794648 0.137608 0.177116 0.459591 0.284833 0.078460 0.121483 0.491485 0.148745 0.238287 0.152590 0.245835 0.214717 0.386857 0.221040 0.320773 0.249918 0.208270 Consensus sequence: VBVDAGGTGTYGVBBV Reverse complement motif 0.221040 0.249918 0.320773 0.208270 0.386857 0.245835 0.214717 0.152590 0.121483 0.148745 0.491485 0.238287 0.177116 0.284833 0.459591 0.078460 0.018763 0.794648 0.048982 0.137608 0.027749 0.009946 0.602513 0.359792 0.806667 0.030172 0.047139 0.116022 0.017531 0.973155 0.005025 0.004289 0.932845 0.061529 0.002368 0.003258 0.005074 0.966734 0.015048 0.013144 0.052259 0.856609 0.054303 0.036829 0.037468 0.007299 0.061032 0.894201 0.241098 0.421448 0.129378 0.208076 0.297430 0.343350 0.215095 0.144125 0.112892 0.341061 0.341342 0.204704 0.253642 0.298295 0.252604 0.195458 Consensus sequence: VVBVCKACACCTHVBV Alignment: VVBVCKACACCTHVBV -------CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00199 Six4 Reverse Complement Reverse Complement Forward 4 6 0.004331 Species: Mus musculus Original motif 0.523054 0.168817 0.140331 0.167798 0.187385 0.177009 0.246164 0.389442 0.414492 0.118547 0.308876 0.158085 0.345234 0.289795 0.130249 0.234723 0.611522 0.116948 0.098944 0.172586 0.016342 0.029436 0.015062 0.939161 0.014351 0.004796 0.962435 0.018418 0.987454 0.005228 0.002590 0.004727 0.007431 0.812214 0.005849 0.174506 0.969354 0.025386 0.002362 0.002898 0.005123 0.989068 0.003362 0.002447 0.001424 0.969981 0.012011 0.016585 0.209729 0.227411 0.210523 0.352337 0.341679 0.297940 0.104590 0.255792 0.126190 0.288862 0.245018 0.339930 0.173008 0.295896 0.252422 0.278674 0.409639 0.210750 0.296197 0.083415 Consensus sequence: ADDHATGACACCBHBBV Reverse complement motif 0.083415 0.210750 0.296197 0.409639 0.173008 0.252422 0.295896 0.278674 0.339930 0.288862 0.245018 0.126190 0.255792 0.297940 0.104590 0.341679 0.352337 0.227411 0.210523 0.209729 0.001424 0.012011 0.969981 0.016585 0.005123 0.003362 0.989068 0.002447 0.002898 0.025386 0.002362 0.969354 0.007431 0.005849 0.812214 0.174506 0.004727 0.005228 0.002590 0.987454 0.014351 0.962435 0.004796 0.018418 0.939161 0.029436 0.015062 0.016342 0.172586 0.116948 0.098944 0.611522 0.234723 0.289795 0.130249 0.345234 0.158085 0.118547 0.308876 0.414492 0.389442 0.177009 0.246164 0.187385 0.167798 0.168817 0.140331 0.523054 Consensus sequence: BBVHVGGTGTCATHDDT Alignment: BBVHVGGTGTCATHDDT ---HAGGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_primary Original Motif Reverse Complement Forward 9 6 0.005241 Species: Mus musculus Original motif 0.186316 0.215541 0.297644 0.300499 0.300381 0.234276 0.266283 0.199061 0.317841 0.211418 0.183235 0.287507 0.482598 0.095323 0.245062 0.177017 0.654197 0.008988 0.261951 0.074864 0.095656 0.022883 0.843364 0.038097 0.002655 0.008355 0.976390 0.012600 0.003287 0.080755 0.001057 0.914900 0.006753 0.001517 0.989917 0.001813 0.039940 0.098800 0.003305 0.857955 0.009015 0.039036 0.844029 0.107921 0.984070 0.002369 0.008852 0.004709 0.789505 0.101528 0.029294 0.079672 0.649685 0.139882 0.090466 0.119966 0.421759 0.205595 0.073074 0.299573 0.214779 0.290522 0.134050 0.360649 0.202141 0.270323 0.176798 0.350738 Consensus sequence: BVHDAGGTGTGAAAHHH Reverse complement motif 0.350738 0.270323 0.176798 0.202141 0.360649 0.290522 0.134050 0.214779 0.299573 0.205595 0.073074 0.421759 0.119966 0.139882 0.090466 0.649685 0.079672 0.101528 0.029294 0.789505 0.004709 0.002369 0.008852 0.984070 0.009015 0.844029 0.039036 0.107921 0.857955 0.098800 0.003305 0.039940 0.006753 0.989917 0.001517 0.001813 0.914900 0.080755 0.001057 0.003287 0.002655 0.976390 0.008355 0.012600 0.095656 0.843364 0.022883 0.038097 0.074864 0.008988 0.261951 0.654197 0.177017 0.095323 0.245062 0.482598 0.287507 0.211418 0.183235 0.317841 0.199061 0.234276 0.266283 0.300381 0.300499 0.215541 0.297644 0.186316 Consensus sequence: HHHTTTCACACCTDHBV Alignment: HHHTTTCACACCTDHBV --------CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Reverse Complement Forward 7 6 0.009113 Species: Mus musculus Original motif 0.306209 0.232705 0.244475 0.216611 0.165668 0.171480 0.222584 0.440269 0.213008 0.429038 0.156385 0.201569 0.283226 0.329518 0.160795 0.226461 0.439156 0.283517 0.251270 0.026056 0.014994 0.980987 0.000714 0.003304 0.975741 0.020182 0.002909 0.001168 0.000926 0.191353 0.801648 0.006073 0.015382 0.090853 0.893043 0.000721 0.001549 0.005912 0.001713 0.990826 0.004000 0.000857 0.989667 0.005475 0.016957 0.663726 0.148127 0.171190 0.299047 0.091156 0.448649 0.161148 0.354701 0.214677 0.236757 0.193865 0.399446 0.174508 0.200036 0.226009 0.303545 0.277435 0.200094 0.218926 0.380242 0.148876 0.163367 0.307514 Consensus sequence: VBHHVCAGGTGCDVDHD Reverse complement motif 0.307514 0.148876 0.163367 0.380242 0.218926 0.277435 0.200094 0.303545 0.226009 0.174508 0.200036 0.399446 0.193865 0.214677 0.236757 0.354701 0.299047 0.448649 0.091156 0.161148 0.016957 0.148127 0.663726 0.171190 0.004000 0.989667 0.000857 0.005475 0.990826 0.005912 0.001713 0.001549 0.015382 0.893043 0.090853 0.000721 0.000926 0.801648 0.191353 0.006073 0.001168 0.020182 0.002909 0.975741 0.014994 0.000714 0.980987 0.003304 0.026056 0.283517 0.251270 0.439156 0.283226 0.160795 0.329518 0.226461 0.213008 0.156385 0.429038 0.201569 0.440269 0.171480 0.222584 0.165668 0.216611 0.232705 0.244475 0.306209 Consensus sequence: DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB ------CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_secondary Original Motif Original Motif Forward 9 6 0.023356 Species: Mus musculus Original motif 0.203365 0.307129 0.203712 0.285795 0.306328 0.182359 0.203143 0.308170 0.220878 0.174035 0.265341 0.339746 0.475421 0.085294 0.281054 0.158231 0.395971 0.330114 0.260810 0.013104 0.001970 0.006366 0.962058 0.029606 0.907785 0.081900 0.001279 0.009036 0.008745 0.981422 0.002970 0.006863 0.006791 0.966163 0.017605 0.009441 0.894233 0.081139 0.004949 0.019679 0.007553 0.970771 0.004892 0.016783 0.016719 0.797465 0.011842 0.173974 0.415678 0.189952 0.165207 0.229163 0.092707 0.182206 0.346121 0.378967 0.175722 0.130498 0.215118 0.478662 0.365762 0.163282 0.315788 0.155168 0.214734 0.272805 0.243194 0.269267 Consensus sequence: BDDRVGACCACCHBDVB Reverse complement motif 0.214734 0.243194 0.272805 0.269267 0.155168 0.163282 0.315788 0.365762 0.478662 0.130498 0.215118 0.175722 0.378967 0.182206 0.346121 0.092707 0.229163 0.189952 0.165207 0.415678 0.016719 0.011842 0.797465 0.173974 0.007553 0.004892 0.970771 0.016783 0.019679 0.081139 0.004949 0.894233 0.006791 0.017605 0.966163 0.009441 0.008745 0.002970 0.981422 0.006863 0.009036 0.081900 0.001279 0.907785 0.001970 0.962058 0.006366 0.029606 0.013104 0.330114 0.260810 0.395971 0.158231 0.085294 0.281054 0.475421 0.339746 0.174035 0.265341 0.220878 0.308170 0.182359 0.203143 0.306328 0.203365 0.203712 0.307129 0.285795 Consensus sequence: BBDVHGGTGGTCBKDDB Alignment: BDDRVGACCACCHBDVB --------CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Original Motif Backward 11 6 0.023393 Species: Mus musculus Original motif 0.204923 0.208846 0.365383 0.220848 0.294304 0.300143 0.167287 0.238266 0.109711 0.619514 0.117379 0.153396 0.178979 0.378580 0.230177 0.212264 0.159594 0.542602 0.118178 0.179627 0.125206 0.430074 0.151826 0.292894 0.097692 0.709845 0.116956 0.075506 0.148292 0.565912 0.037632 0.248164 0.077951 0.034190 0.855503 0.032356 0.001657 0.001061 0.971877 0.025405 0.001926 0.001084 0.991712 0.005278 0.033031 0.012001 0.057796 0.897171 0.002723 0.002647 0.993348 0.001281 0.003261 0.000963 0.987199 0.008577 0.000611 0.090925 0.074857 0.833608 0.015299 0.978878 0.004949 0.000874 0.013368 0.600902 0.033485 0.352245 0.231949 0.149575 0.118804 0.499672 0.267580 0.186002 0.371242 0.175176 0.264884 0.223483 0.110082 0.401551 0.221365 0.170121 0.179559 0.428955 0.112997 0.692930 0.139981 0.054092 0.460305 0.207883 0.155111 0.176702 Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Reverse complement motif 0.176702 0.207883 0.155111 0.460305 0.112997 0.139981 0.692930 0.054092 0.428955 0.170121 0.179559 0.221365 0.401551 0.223483 0.110082 0.264884 0.267580 0.371242 0.186002 0.175176 0.499672 0.149575 0.118804 0.231949 0.013368 0.033485 0.600902 0.352245 0.015299 0.004949 0.978878 0.000874 0.833608 0.090925 0.074857 0.000611 0.003261 0.987199 0.000963 0.008577 0.002723 0.993348 0.002647 0.001281 0.897171 0.012001 0.057796 0.033031 0.001926 0.991712 0.001084 0.005278 0.001657 0.971877 0.001061 0.025405 0.077951 0.855503 0.034190 0.032356 0.148292 0.037632 0.565912 0.248164 0.097692 0.116956 0.709845 0.075506 0.125206 0.151826 0.430074 0.292894 0.159594 0.118178 0.542602 0.179627 0.178979 0.230177 0.378580 0.212264 0.109711 0.117379 0.619514 0.153396 0.294304 0.167287 0.300143 0.238266 0.204923 0.365383 0.208846 0.220848 Consensus sequence: HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH -------HAGGTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Original Motif Original Motif Forward 12 6 0.025434 Species: Mus musculus Original motif 0.472795 0.179227 0.091251 0.256726 0.036521 0.159743 0.204840 0.598896 0.164582 0.312805 0.221324 0.301289 0.237069 0.249050 0.293048 0.220833 0.401949 0.225181 0.229401 0.143469 0.161422 0.494334 0.252207 0.092036 0.252940 0.177721 0.369400 0.199939 0.119630 0.024651 0.849920 0.005798 0.000962 0.002398 0.990616 0.006023 0.937852 0.027016 0.034535 0.000597 0.008963 0.987756 0.000629 0.002652 0.001584 0.992898 0.002349 0.003169 0.956822 0.027342 0.002484 0.013352 0.009873 0.987759 0.000988 0.001381 0.016397 0.980856 0.000369 0.002378 0.081761 0.758555 0.038572 0.121112 0.371713 0.091838 0.448027 0.088423 0.111617 0.121913 0.683885 0.082585 0.334562 0.102916 0.436488 0.126034 0.210362 0.101261 0.238339 0.450037 0.169041 0.271583 0.320799 0.238576 0.140316 0.049885 0.735236 0.074563 Consensus sequence: HTBVVVDGGACCACCCRGRDBG Reverse complement motif 0.140316 0.735236 0.049885 0.074563 0.169041 0.320799 0.271583 0.238576 0.450037 0.101261 0.238339 0.210362 0.334562 0.436488 0.102916 0.126034 0.111617 0.683885 0.121913 0.082585 0.371713 0.448027 0.091838 0.088423 0.081761 0.038572 0.758555 0.121112 0.016397 0.000369 0.980856 0.002378 0.009873 0.000988 0.987759 0.001381 0.013352 0.027342 0.002484 0.956822 0.001584 0.002349 0.992898 0.003169 0.008963 0.000629 0.987756 0.002652 0.000597 0.027016 0.034535 0.937852 0.000962 0.990616 0.002398 0.006023 0.119630 0.849920 0.024651 0.005798 0.252940 0.369400 0.177721 0.199939 0.161422 0.252207 0.494334 0.092036 0.143469 0.225181 0.229401 0.401949 0.237069 0.293048 0.249050 0.220833 0.164582 0.221324 0.312805 0.301289 0.598896 0.159743 0.204840 0.036521 0.256726 0.179227 0.091251 0.472795 Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH Alignment: HTBVVVDGGACCACCCRGRDBG -----------CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Original Motif Original Motif Backward 6 6 0.029014 Species: Mus musculus Original motif 0.180868 0.321661 0.134642 0.362829 0.232215 0.134289 0.315356 0.318141 0.065068 0.093681 0.569842 0.271408 0.370822 0.229680 0.154738 0.244759 0.323039 0.182873 0.173588 0.320500 0.175039 0.266898 0.276080 0.281984 0.412669 0.147730 0.146326 0.293275 0.325953 0.028805 0.629596 0.015646 0.003017 0.001766 0.979711 0.015507 0.888973 0.040666 0.069420 0.000941 0.017309 0.979155 0.000899 0.002637 0.001732 0.988816 0.004856 0.004596 0.889763 0.078125 0.010384 0.021729 0.007566 0.987081 0.001421 0.003932 0.027797 0.966593 0.000878 0.004731 0.025816 0.867003 0.065749 0.041433 0.220658 0.075256 0.582904 0.121182 0.088946 0.283695 0.565345 0.062015 0.328012 0.241332 0.305901 0.124755 0.307302 0.137589 0.375928 0.179181 0.298752 0.231470 0.315255 0.154524 0.094565 0.142901 0.705696 0.056838 Consensus sequence: HDGHHBHRGACCACCCGSVDVG Reverse complement motif 0.094565 0.705696 0.142901 0.056838 0.298752 0.315255 0.231470 0.154524 0.307302 0.375928 0.137589 0.179181 0.124755 0.241332 0.305901 0.328012 0.088946 0.565345 0.283695 0.062015 0.220658 0.582904 0.075256 0.121182 0.025816 0.065749 0.867003 0.041433 0.027797 0.000878 0.966593 0.004731 0.007566 0.001421 0.987081 0.003932 0.021729 0.078125 0.010384 0.889763 0.001732 0.004856 0.988816 0.004596 0.017309 0.000899 0.979155 0.002637 0.000941 0.040666 0.069420 0.888973 0.003017 0.979711 0.001766 0.015507 0.325953 0.629596 0.028805 0.015646 0.293275 0.147730 0.146326 0.412669 0.281984 0.266898 0.276080 0.175039 0.320500 0.182873 0.173588 0.323039 0.244759 0.229680 0.154738 0.370822 0.065068 0.569842 0.093681 0.271408 0.318141 0.134289 0.315356 0.232215 0.362829 0.321661 0.134642 0.180868 Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH Alignment: HDGHHBHRGACCACCCGSVDVG -----------CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_primary Reverse Complement Original Motif Backward 5 6 0.030967 Species: Mus musculus Original motif 0.249543 0.203739 0.394131 0.152587 0.349361 0.204136 0.321767 0.124736 0.386930 0.174655 0.250284 0.188131 0.173937 0.233501 0.412360 0.180201 0.663624 0.037653 0.264216 0.034507 0.717265 0.040761 0.206656 0.035318 0.004176 0.985948 0.003219 0.006657 0.967612 0.005543 0.008604 0.018241 0.080781 0.089857 0.746009 0.083354 0.019831 0.270961 0.409808 0.299401 0.019877 0.026996 0.014022 0.939105 0.005169 0.007980 0.978334 0.008518 0.115710 0.200514 0.226485 0.457291 0.032392 0.527196 0.128372 0.312041 0.202049 0.384912 0.106488 0.306551 0.181994 0.192975 0.425582 0.199448 Consensus sequence: VVDBAACAGBTGBYHB Reverse complement motif 0.181994 0.425582 0.192975 0.199448 0.202049 0.106488 0.384912 0.306551 0.032392 0.128372 0.527196 0.312041 0.457291 0.200514 0.226485 0.115710 0.005169 0.978334 0.007980 0.008518 0.939105 0.026996 0.014022 0.019877 0.019831 0.409808 0.270961 0.299401 0.080781 0.746009 0.089857 0.083354 0.018241 0.005543 0.008604 0.967612 0.004176 0.003219 0.985948 0.006657 0.035318 0.040761 0.206656 0.717265 0.034507 0.037653 0.264216 0.663624 0.173937 0.412360 0.233501 0.180201 0.188131 0.174655 0.250284 0.386930 0.124736 0.204136 0.321767 0.349361 0.249543 0.394131 0.203739 0.152587 Consensus sequence: BDKVCABCTGTTBDBV Alignment: VVDBAACAGBTGBYHB ------HAGGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Original Motif Original Motif Backward 6 6 0.031502 Species: Mus musculus Original motif 0.284346 0.280937 0.138180 0.296538 0.399663 0.110464 0.327481 0.162392 0.637560 0.029806 0.218321 0.114314 0.184898 0.144379 0.370828 0.299895 0.017459 0.862111 0.118223 0.002207 0.001004 0.958164 0.000888 0.039945 0.947796 0.011499 0.000413 0.040291 0.024268 0.973476 0.000709 0.001546 0.002616 0.001901 0.003337 0.992147 0.006742 0.071290 0.000276 0.921691 0.393078 0.093424 0.490620 0.022879 0.870162 0.007294 0.051952 0.070591 0.632449 0.156278 0.172644 0.038628 0.362798 0.126579 0.085796 0.424828 0.132810 0.206405 0.025084 0.635702 0.094708 0.272324 0.087702 0.545267 Consensus sequence: HDADCCACTTRAAWTT Reverse complement motif 0.545267 0.272324 0.087702 0.094708 0.635702 0.206405 0.025084 0.132810 0.424828 0.126579 0.085796 0.362798 0.038628 0.156278 0.172644 0.632449 0.070591 0.007294 0.051952 0.870162 0.393078 0.490620 0.093424 0.022879 0.921691 0.071290 0.000276 0.006742 0.992147 0.001901 0.003337 0.002616 0.024268 0.000709 0.973476 0.001546 0.040291 0.011499 0.000413 0.947796 0.001004 0.000888 0.958164 0.039945 0.017459 0.118223 0.862111 0.002207 0.184898 0.370828 0.144379 0.299895 0.114314 0.029806 0.218321 0.637560 0.162392 0.110464 0.327481 0.399663 0.296538 0.280937 0.138180 0.284346 Consensus sequence: AAWTTMAAGTGGHTDH Alignment: HDADCCACTTRAAWTT -----CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 6 Motif name: Mycn Original motif 0.349315 0.363014 0.143836 0.143836 0.089041 0.388128 0.447489 0.075342 0.015982 0.984018 0.000000 0.000000 0.945205 0.000000 0.041096 0.013699 0.000000 0.961187 0.018265 0.020548 0.070776 0.002283 0.924658 0.002283 0.054795 0.221461 0.004566 0.719178 0.000000 0.000000 0.938356 0.061644 0.061644 0.111872 0.739726 0.086758 0.139269 0.605023 0.091324 0.164384 Consensus sequence: HSCACGTGGC Reserve complement motif 0.139269 0.091324 0.605023 0.164384 0.061644 0.739726 0.111872 0.086758 0.000000 0.938356 0.000000 0.061644 0.719178 0.221461 0.004566 0.054795 0.070776 0.924658 0.002283 0.002283 0.000000 0.018265 0.961187 0.020548 0.013699 0.000000 0.041096 0.945205 0.015982 0.000000 0.984018 0.000000 0.089041 0.447489 0.388128 0.075342 0.349315 0.143836 0.363014 0.143836 Consensus sequence: GCCACGTGSD ************************************************************************ Best Matches for Motif ID 6 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Forward 3 10 0.000000 Species: Mus musculus Original motif 0.234855 0.152539 0.301720 0.310886 0.199226 0.147959 0.439250 0.213565 0.582926 0.274768 0.075866 0.066440 0.138829 0.475428 0.305884 0.079859 0.024979 0.969691 0.001811 0.003520 0.966345 0.003728 0.022320 0.007607 0.000598 0.907006 0.008160 0.084236 0.084236 0.008160 0.907006 0.000598 0.007607 0.022320 0.003728 0.966345 0.003520 0.001811 0.969691 0.024979 0.149140 0.241218 0.389598 0.220044 0.066440 0.075866 0.274768 0.582926 0.186990 0.346199 0.250066 0.216745 0.273437 0.225889 0.300738 0.199936 0.160893 0.111177 0.477963 0.249968 0.171790 0.101256 0.424580 0.302375 Consensus sequence: DDASCACGTGBTBVDD Reverse complement motif 0.171790 0.424580 0.101256 0.302375 0.160893 0.477963 0.111177 0.249968 0.273437 0.300738 0.225889 0.199936 0.186990 0.250066 0.346199 0.216745 0.582926 0.075866 0.274768 0.066440 0.149140 0.389598 0.241218 0.220044 0.003520 0.969691 0.001811 0.024979 0.966345 0.022320 0.003728 0.007607 0.084236 0.907006 0.008160 0.000598 0.000598 0.008160 0.907006 0.084236 0.007607 0.003728 0.022320 0.966345 0.024979 0.001811 0.969691 0.003520 0.138829 0.305884 0.475428 0.079859 0.066440 0.274768 0.075866 0.582926 0.199226 0.439250 0.147959 0.213565 0.310886 0.152539 0.301720 0.234855 Consensus sequence: HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD --HSCACGTGGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Backward 7 10 0.007838 Species: Mus musculus Original motif 0.120938 0.344851 0.124072 0.410138 0.220931 0.169844 0.422396 0.186829 0.127752 0.260812 0.103811 0.507625 0.140641 0.405473 0.287668 0.166218 0.296957 0.155579 0.301094 0.246370 0.219647 0.287193 0.154072 0.339087 0.049294 0.026059 0.121789 0.802859 0.520042 0.289284 0.173423 0.017251 0.049190 0.943472 0.004308 0.003030 0.902609 0.006767 0.074770 0.015854 0.003221 0.971329 0.005512 0.019937 0.019937 0.005512 0.971329 0.003221 0.015854 0.074770 0.006767 0.902609 0.003030 0.004308 0.943472 0.049190 0.003497 0.088920 0.685942 0.221641 0.802859 0.121789 0.026059 0.049294 0.334544 0.155170 0.275193 0.235092 0.275957 0.132104 0.454982 0.136957 0.134097 0.254352 0.422940 0.188611 0.396163 0.432784 0.051281 0.119772 0.276474 0.115627 0.419844 0.188056 0.160759 0.088061 0.649863 0.101318 0.203314 0.166595 0.106821 0.523270 Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Reverse complement motif 0.523270 0.166595 0.106821 0.203314 0.160759 0.649863 0.088061 0.101318 0.276474 0.419844 0.115627 0.188056 0.396163 0.051281 0.432784 0.119772 0.134097 0.422940 0.254352 0.188611 0.275957 0.454982 0.132104 0.136957 0.235092 0.155170 0.275193 0.334544 0.049294 0.121789 0.026059 0.802859 0.003497 0.685942 0.088920 0.221641 0.003030 0.943472 0.004308 0.049190 0.902609 0.074770 0.006767 0.015854 0.019937 0.971329 0.005512 0.003221 0.003221 0.005512 0.971329 0.019937 0.015854 0.006767 0.074770 0.902609 0.049190 0.004308 0.943472 0.003030 0.017251 0.289284 0.173423 0.520042 0.802859 0.026059 0.121789 0.049294 0.339087 0.287193 0.154072 0.219647 0.296957 0.301094 0.155579 0.246370 0.140641 0.287668 0.405473 0.166218 0.507625 0.260812 0.103811 0.127752 0.220931 0.422396 0.169844 0.186829 0.410138 0.344851 0.124072 0.120938 Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM -------GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Backward 7 10 0.013286 Species: Mus musculus Original motif 0.347837 0.112349 0.403713 0.136102 0.298329 0.175329 0.324534 0.201809 0.421791 0.222553 0.113615 0.242041 0.387506 0.130670 0.161435 0.320389 0.197183 0.244864 0.304611 0.253342 0.345884 0.188786 0.278290 0.187041 0.228203 0.142148 0.408269 0.221381 0.037126 0.006772 0.231775 0.724328 0.055214 0.942800 0.001192 0.000794 0.974119 0.004466 0.015535 0.005880 0.000300 0.958145 0.007498 0.034056 0.034056 0.007498 0.958145 0.000300 0.005880 0.015535 0.004466 0.974119 0.000794 0.001192 0.942800 0.055214 0.724328 0.231775 0.006772 0.037126 0.015720 0.466476 0.315208 0.202596 0.173670 0.355170 0.210710 0.260449 0.407419 0.261539 0.134430 0.196612 0.351478 0.209698 0.262426 0.176399 0.207869 0.284582 0.198951 0.308598 0.434482 0.113724 0.184408 0.267386 0.211144 0.363745 0.173978 0.251133 Consensus sequence: RDHDBVDTCACGTGASBHVHDH Reverse complement motif 0.211144 0.173978 0.363745 0.251133 0.267386 0.113724 0.184408 0.434482 0.308598 0.284582 0.198951 0.207869 0.176399 0.209698 0.262426 0.351478 0.196612 0.261539 0.134430 0.407419 0.173670 0.210710 0.355170 0.260449 0.015720 0.315208 0.466476 0.202596 0.037126 0.231775 0.006772 0.724328 0.000794 0.942800 0.001192 0.055214 0.974119 0.015535 0.004466 0.005880 0.034056 0.958145 0.007498 0.000300 0.000300 0.007498 0.958145 0.034056 0.005880 0.004466 0.015535 0.974119 0.055214 0.001192 0.942800 0.000794 0.724328 0.006772 0.231775 0.037126 0.228203 0.408269 0.142148 0.221381 0.187041 0.188786 0.278290 0.345884 0.197183 0.304611 0.244864 0.253342 0.320389 0.130670 0.161435 0.387506 0.242041 0.222553 0.113615 0.421791 0.298329 0.324534 0.175329 0.201809 0.347837 0.403713 0.112349 0.136102 Consensus sequence: DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM ------GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Original Motif Backward 5 10 0.022793 Species: Mus musculus Original motif 0.306209 0.232705 0.244475 0.216611 0.165668 0.171480 0.222584 0.440269 0.213008 0.429038 0.156385 0.201569 0.283226 0.329518 0.160795 0.226461 0.439156 0.283517 0.251270 0.026056 0.014994 0.980987 0.000714 0.003304 0.975741 0.020182 0.002909 0.001168 0.000926 0.191353 0.801648 0.006073 0.015382 0.090853 0.893043 0.000721 0.001549 0.005912 0.001713 0.990826 0.004000 0.000857 0.989667 0.005475 0.016957 0.663726 0.148127 0.171190 0.299047 0.091156 0.448649 0.161148 0.354701 0.214677 0.236757 0.193865 0.399446 0.174508 0.200036 0.226009 0.303545 0.277435 0.200094 0.218926 0.380242 0.148876 0.163367 0.307514 Consensus sequence: VBHHVCAGGTGCDVDHD Reverse complement motif 0.307514 0.148876 0.163367 0.380242 0.218926 0.277435 0.200094 0.303545 0.226009 0.174508 0.200036 0.399446 0.193865 0.214677 0.236757 0.354701 0.299047 0.448649 0.091156 0.161148 0.016957 0.148127 0.663726 0.171190 0.004000 0.989667 0.000857 0.005475 0.990826 0.005912 0.001713 0.001549 0.015382 0.893043 0.090853 0.000721 0.000926 0.801648 0.191353 0.006073 0.001168 0.020182 0.002909 0.975741 0.014994 0.000714 0.980987 0.003304 0.026056 0.283517 0.251270 0.439156 0.283226 0.160795 0.329518 0.226461 0.213008 0.156385 0.429038 0.201569 0.440269 0.171480 0.222584 0.165668 0.216611 0.232705 0.244475 0.306209 Consensus sequence: DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD ---GCCACGTGSD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Original Motif Forward 3 10 0.025701 Species: Mus musculus Original motif 0.127991 0.202889 0.399822 0.269298 0.156940 0.244015 0.182364 0.416681 0.046494 0.050598 0.744311 0.158596 0.196142 0.365183 0.183389 0.255286 0.019306 0.946805 0.015210 0.018680 0.924839 0.022113 0.027620 0.025428 0.007478 0.672138 0.027789 0.292595 0.046702 0.026044 0.906146 0.021107 0.117335 0.610863 0.025132 0.246670 0.044431 0.053581 0.722748 0.179240 0.543713 0.149809 0.190030 0.116447 0.241148 0.722386 0.022547 0.013919 0.265412 0.113032 0.270602 0.350954 0.226186 0.143504 0.332746 0.297564 Consensus sequence: BBGHCACGCGACDD Reverse complement motif 0.226186 0.332746 0.143504 0.297564 0.350954 0.113032 0.270602 0.265412 0.241148 0.022547 0.722386 0.013919 0.116447 0.149809 0.190030 0.543713 0.044431 0.722748 0.053581 0.179240 0.117335 0.025132 0.610863 0.246670 0.046702 0.906146 0.026044 0.021107 0.007478 0.027789 0.672138 0.292595 0.025428 0.022113 0.027620 0.924839 0.019306 0.015210 0.946805 0.018680 0.196142 0.183389 0.365183 0.255286 0.046494 0.744311 0.050598 0.158596 0.416681 0.244015 0.182364 0.156940 0.127991 0.399822 0.202889 0.269298 Consensus sequence: HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD --HSCACGTGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Reverse Complement Original Motif Backward 4 10 0.034483 Species: Mus musculus Original motif 0.142834 0.324493 0.147276 0.385397 0.404842 0.233186 0.227659 0.134313 0.677580 0.044952 0.178774 0.098695 0.137761 0.202622 0.469728 0.189889 0.069301 0.825888 0.093549 0.011262 0.003882 0.876858 0.000966 0.118295 0.904355 0.015154 0.001043 0.079449 0.018912 0.977464 0.001207 0.002417 0.003517 0.004393 0.002428 0.989662 0.007151 0.162279 0.000584 0.829986 0.192074 0.120883 0.670840 0.016203 0.881358 0.002039 0.013253 0.103349 0.450016 0.333144 0.184121 0.032719 0.342018 0.321148 0.066945 0.269889 0.209486 0.122118 0.046367 0.622029 0.174564 0.145894 0.048004 0.631539 Consensus sequence: BVABCCACTTGAMHTT Reverse complement motif 0.631539 0.145894 0.048004 0.174564 0.622029 0.122118 0.046367 0.209486 0.269889 0.321148 0.066945 0.342018 0.032719 0.333144 0.184121 0.450016 0.103349 0.002039 0.013253 0.881358 0.192074 0.670840 0.120883 0.016203 0.829986 0.162279 0.000584 0.007151 0.989662 0.004393 0.002428 0.003517 0.018912 0.001207 0.977464 0.002417 0.079449 0.015154 0.001043 0.904355 0.003882 0.000966 0.876858 0.118295 0.069301 0.093549 0.825888 0.011262 0.137761 0.469728 0.202622 0.189889 0.098695 0.044952 0.178774 0.677580 0.134313 0.233186 0.227659 0.404842 0.385397 0.324493 0.147276 0.142834 Consensus sequence: AAHYTCAAGTGGBTBV Alignment: BVABCCACTTGAMHTT ---GCCACGTGSD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Reverse Complement Original Motif Backward 5 10 0.035228 Species: Mus musculus Original motif 0.299323 0.258429 0.141957 0.300291 0.267631 0.143882 0.146933 0.441554 0.482614 0.212022 0.233631 0.071733 0.430836 0.073912 0.334439 0.160813 0.124944 0.704331 0.166815 0.003910 0.001941 0.876479 0.000828 0.120752 0.920202 0.005985 0.000456 0.073357 0.023544 0.974093 0.000859 0.001505 0.005010 0.003098 0.001328 0.990564 0.003250 0.198149 0.000490 0.798110 0.134659 0.104976 0.753464 0.006901 0.932490 0.000724 0.006140 0.060646 0.504530 0.106203 0.360995 0.028271 0.673257 0.074893 0.106536 0.145314 0.356324 0.097610 0.230142 0.315924 0.129483 0.188353 0.203623 0.478542 0.289071 0.157675 0.231909 0.321345 Consensus sequence: HDVRCCACTTGARADBD Reverse complement motif 0.321345 0.157675 0.231909 0.289071 0.478542 0.188353 0.203623 0.129483 0.315924 0.097610 0.230142 0.356324 0.145314 0.074893 0.106536 0.673257 0.028271 0.106203 0.360995 0.504530 0.060646 0.000724 0.006140 0.932490 0.134659 0.753464 0.104976 0.006901 0.798110 0.198149 0.000490 0.003250 0.990564 0.003098 0.001328 0.005010 0.023544 0.000859 0.974093 0.001505 0.073357 0.005985 0.000456 0.920202 0.001941 0.000828 0.876479 0.120752 0.124944 0.166815 0.704331 0.003910 0.160813 0.073912 0.334439 0.430836 0.071733 0.212022 0.233631 0.482614 0.441554 0.143882 0.146933 0.267631 0.300291 0.258429 0.141957 0.299323 Consensus sequence: DVDTKTCAAGTGGKBDH Alignment: HDVRCCACTTGARADBD ---GCCACGTGSD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_primary Reverse Complement Reverse Complement Backward 4 10 0.035858 Species: Mus musculus Original motif 0.166569 0.264627 0.345569 0.223235 0.335599 0.314451 0.153336 0.196615 0.105350 0.231839 0.348018 0.314793 0.131274 0.215623 0.291288 0.361815 0.125570 0.072341 0.404848 0.397242 0.049879 0.039110 0.325167 0.585844 0.705098 0.009202 0.284757 0.000943 0.003535 0.986983 0.004275 0.005207 0.005207 0.004275 0.986983 0.003535 0.000943 0.284757 0.009202 0.705098 0.585844 0.325167 0.039110 0.049879 0.397242 0.404848 0.072341 0.125570 0.206857 0.234555 0.371731 0.186857 0.435957 0.145115 0.181033 0.237896 0.176104 0.260127 0.230770 0.333000 0.272102 0.213365 0.312032 0.202501 0.237402 0.250982 0.266977 0.244639 Consensus sequence: BHBBKKACGTMMVDBVB Reverse complement motif 0.237402 0.266977 0.250982 0.244639 0.272102 0.312032 0.213365 0.202501 0.333000 0.260127 0.230770 0.176104 0.237896 0.145115 0.181033 0.435957 0.206857 0.371731 0.234555 0.186857 0.397242 0.072341 0.404848 0.125570 0.049879 0.325167 0.039110 0.585844 0.705098 0.284757 0.009202 0.000943 0.005207 0.986983 0.004275 0.003535 0.003535 0.004275 0.986983 0.005207 0.000943 0.009202 0.284757 0.705098 0.585844 0.039110 0.325167 0.049879 0.125570 0.404848 0.072341 0.397242 0.361815 0.215623 0.291288 0.131274 0.105350 0.348018 0.231839 0.314793 0.196615 0.314451 0.153336 0.335599 0.166569 0.345569 0.264627 0.223235 Consensus sequence: BVVDVRYACGTRYVBHB Alignment: BVVDVRYACGTRYVBHB ----GCCACGTGSD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_secondary Original Motif Reverse Complement Backward 4 10 0.037250 Species: Mus musculus Original motif 0.171801 0.139045 0.265726 0.423428 0.146597 0.118316 0.577770 0.157317 0.247220 0.191958 0.432935 0.127887 0.119277 0.232191 0.394786 0.253747 0.227546 0.664338 0.016991 0.091125 0.271290 0.146819 0.518707 0.063184 0.693351 0.120942 0.066863 0.118844 0.041459 0.895990 0.042253 0.020298 0.020298 0.042253 0.895990 0.041459 0.118844 0.066863 0.120942 0.693351 0.063184 0.518707 0.146819 0.271290 0.091125 0.016991 0.664338 0.227546 0.122589 0.186959 0.078274 0.612178 0.103039 0.274719 0.113320 0.508922 0.375945 0.289040 0.127861 0.207153 0.429989 0.189120 0.110127 0.270765 Consensus sequence: DGVBCRACGTYGTYHH Reverse complement motif 0.270765 0.189120 0.110127 0.429989 0.207153 0.289040 0.127861 0.375945 0.508922 0.274719 0.113320 0.103039 0.612178 0.186959 0.078274 0.122589 0.091125 0.664338 0.016991 0.227546 0.063184 0.146819 0.518707 0.271290 0.693351 0.066863 0.120942 0.118844 0.020298 0.895990 0.042253 0.041459 0.041459 0.042253 0.895990 0.020298 0.118844 0.120942 0.066863 0.693351 0.271290 0.518707 0.146819 0.063184 0.227546 0.016991 0.664338 0.091125 0.119277 0.394786 0.232191 0.253747 0.247220 0.432935 0.191958 0.127887 0.146597 0.577770 0.118316 0.157317 0.423428 0.139045 0.265726 0.171801 Consensus sequence: HHMACKACGTMGBVCD Alignment: HHMACKACGTMGBVCD ---HSCACGTGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Original Motif Original Motif Forward 7 10 0.038319 Species: Mus musculus Original motif 0.456612 0.057181 0.078281 0.407926 0.460529 0.185506 0.083106 0.270859 0.445717 0.179510 0.239355 0.135417 0.116339 0.145186 0.275331 0.463144 0.239398 0.142078 0.480004 0.138520 0.355157 0.217877 0.284296 0.142670 0.318602 0.444835 0.153321 0.083243 0.609569 0.055866 0.280349 0.054216 0.062297 0.769824 0.027844 0.140035 0.151868 0.019245 0.803188 0.025699 0.011842 0.952534 0.017959 0.017665 0.017665 0.017959 0.952534 0.011842 0.025699 0.803188 0.019245 0.151868 0.140035 0.027844 0.769824 0.062297 0.054216 0.280349 0.055866 0.609569 0.013084 0.624655 0.177956 0.184305 0.287647 0.183527 0.295753 0.233074 0.042309 0.345931 0.198458 0.413301 0.338138 0.266033 0.045367 0.350462 0.302850 0.155320 0.074662 0.467168 0.240926 0.068901 0.283055 0.407118 0.409954 0.183157 0.154186 0.252704 Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Reverse complement motif 0.252704 0.183157 0.154186 0.409954 0.407118 0.068901 0.283055 0.240926 0.467168 0.155320 0.074662 0.302850 0.350462 0.266033 0.045367 0.338138 0.413301 0.345931 0.198458 0.042309 0.287647 0.295753 0.183527 0.233074 0.013084 0.177956 0.624655 0.184305 0.609569 0.280349 0.055866 0.054216 0.140035 0.769824 0.027844 0.062297 0.025699 0.019245 0.803188 0.151868 0.017665 0.952534 0.017959 0.011842 0.011842 0.017959 0.952534 0.017665 0.151868 0.803188 0.019245 0.025699 0.062297 0.027844 0.769824 0.140035 0.054216 0.055866 0.280349 0.609569 0.318602 0.153321 0.444835 0.083243 0.142670 0.217877 0.284296 0.355157 0.239398 0.480004 0.142078 0.138520 0.463144 0.145186 0.275331 0.116339 0.135417 0.179510 0.239355 0.445717 0.270859 0.185506 0.083106 0.460529 0.407926 0.057181 0.078281 0.456612 Consensus sequence: HDWHMHGACGCGCGTRBVVBHW Alignment: WHVBVVMACGCGCGTCDYHWDH ------HSCACGTGGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 8 Motif name: Myc Original motif 0.295154 0.422907 0.158590 0.123348 0.149780 0.233480 0.572687 0.044053 0.035242 0.964758 0.000000 0.000000 0.955947 0.017621 0.022026 0.004405 0.000000 0.933921 0.013216 0.052863 0.083700 0.008811 0.898678 0.008811 0.039648 0.193833 0.000000 0.766520 0.000000 0.008811 0.951542 0.039648 0.000000 0.074890 0.806167 0.118943 0.198238 0.471366 0.105727 0.224670 Consensus sequence: VGCACGTGGH Reserve complement motif 0.198238 0.105727 0.471366 0.224670 0.000000 0.806167 0.074890 0.118943 0.000000 0.951542 0.008811 0.039648 0.766520 0.193833 0.000000 0.039648 0.083700 0.898678 0.008811 0.008811 0.000000 0.013216 0.933921 0.052863 0.004405 0.017621 0.022026 0.955947 0.035242 0.000000 0.964758 0.000000 0.149780 0.572687 0.233480 0.044053 0.295154 0.158590 0.422907 0.123348 Consensus sequence: DCCACGTGCV ************************************************************************ Best Matches for Motif ID 8 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Backward 5 10 0.000000 Species: Mus musculus Original motif 0.234855 0.152539 0.301720 0.310886 0.199226 0.147959 0.439250 0.213565 0.582926 0.274768 0.075866 0.066440 0.138829 0.475428 0.305884 0.079859 0.024979 0.969691 0.001811 0.003520 0.966345 0.003728 0.022320 0.007607 0.000598 0.907006 0.008160 0.084236 0.084236 0.008160 0.907006 0.000598 0.007607 0.022320 0.003728 0.966345 0.003520 0.001811 0.969691 0.024979 0.149140 0.241218 0.389598 0.220044 0.066440 0.075866 0.274768 0.582926 0.186990 0.346199 0.250066 0.216745 0.273437 0.225889 0.300738 0.199936 0.160893 0.111177 0.477963 0.249968 0.171790 0.101256 0.424580 0.302375 Consensus sequence: DDASCACGTGBTBVDD Reverse complement motif 0.171790 0.424580 0.101256 0.302375 0.160893 0.477963 0.111177 0.249968 0.273437 0.300738 0.225889 0.199936 0.186990 0.250066 0.346199 0.216745 0.582926 0.075866 0.274768 0.066440 0.149140 0.389598 0.241218 0.220044 0.003520 0.969691 0.001811 0.024979 0.966345 0.022320 0.003728 0.007607 0.084236 0.907006 0.008160 0.000598 0.000598 0.008160 0.907006 0.084236 0.007607 0.003728 0.022320 0.966345 0.024979 0.001811 0.969691 0.003520 0.138829 0.305884 0.475428 0.079859 0.066440 0.274768 0.075866 0.582926 0.199226 0.439250 0.147959 0.213565 0.310886 0.152539 0.301720 0.234855 Consensus sequence: HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD --VGCACGTGGH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Forward 8 10 0.006319 Species: Mus musculus Original motif 0.120938 0.344851 0.124072 0.410138 0.220931 0.169844 0.422396 0.186829 0.127752 0.260812 0.103811 0.507625 0.140641 0.405473 0.287668 0.166218 0.296957 0.155579 0.301094 0.246370 0.219647 0.287193 0.154072 0.339087 0.049294 0.026059 0.121789 0.802859 0.520042 0.289284 0.173423 0.017251 0.049190 0.943472 0.004308 0.003030 0.902609 0.006767 0.074770 0.015854 0.003221 0.971329 0.005512 0.019937 0.019937 0.005512 0.971329 0.003221 0.015854 0.074770 0.006767 0.902609 0.003030 0.004308 0.943472 0.049190 0.003497 0.088920 0.685942 0.221641 0.802859 0.121789 0.026059 0.049294 0.334544 0.155170 0.275193 0.235092 0.275957 0.132104 0.454982 0.136957 0.134097 0.254352 0.422940 0.188611 0.396163 0.432784 0.051281 0.119772 0.276474 0.115627 0.419844 0.188056 0.160759 0.088061 0.649863 0.101318 0.203314 0.166595 0.106821 0.523270 Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Reverse complement motif 0.523270 0.166595 0.106821 0.203314 0.160759 0.649863 0.088061 0.101318 0.276474 0.419844 0.115627 0.188056 0.396163 0.051281 0.432784 0.119772 0.134097 0.422940 0.254352 0.188611 0.275957 0.454982 0.132104 0.136957 0.235092 0.155170 0.275193 0.334544 0.049294 0.121789 0.026059 0.802859 0.003497 0.685942 0.088920 0.221641 0.003030 0.943472 0.004308 0.049190 0.902609 0.074770 0.006767 0.015854 0.019937 0.971329 0.005512 0.003221 0.003221 0.005512 0.971329 0.019937 0.015854 0.006767 0.074770 0.902609 0.049190 0.004308 0.943472 0.003030 0.017251 0.289284 0.173423 0.520042 0.802859 0.026059 0.121789 0.049294 0.339087 0.287193 0.154072 0.219647 0.296957 0.301094 0.155579 0.246370 0.140641 0.287668 0.405473 0.166218 0.507625 0.260812 0.103811 0.127752 0.220931 0.422396 0.169844 0.186829 0.410138 0.344851 0.124072 0.120938 Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM -------DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Backward 7 10 0.008217 Species: Mus musculus Original motif 0.347837 0.112349 0.403713 0.136102 0.298329 0.175329 0.324534 0.201809 0.421791 0.222553 0.113615 0.242041 0.387506 0.130670 0.161435 0.320389 0.197183 0.244864 0.304611 0.253342 0.345884 0.188786 0.278290 0.187041 0.228203 0.142148 0.408269 0.221381 0.037126 0.006772 0.231775 0.724328 0.055214 0.942800 0.001192 0.000794 0.974119 0.004466 0.015535 0.005880 0.000300 0.958145 0.007498 0.034056 0.034056 0.007498 0.958145 0.000300 0.005880 0.015535 0.004466 0.974119 0.000794 0.001192 0.942800 0.055214 0.724328 0.231775 0.006772 0.037126 0.015720 0.466476 0.315208 0.202596 0.173670 0.355170 0.210710 0.260449 0.407419 0.261539 0.134430 0.196612 0.351478 0.209698 0.262426 0.176399 0.207869 0.284582 0.198951 0.308598 0.434482 0.113724 0.184408 0.267386 0.211144 0.363745 0.173978 0.251133 Consensus sequence: RDHDBVDTCACGTGASBHVHDH Reverse complement motif 0.211144 0.173978 0.363745 0.251133 0.267386 0.113724 0.184408 0.434482 0.308598 0.284582 0.198951 0.207869 0.176399 0.209698 0.262426 0.351478 0.196612 0.261539 0.134430 0.407419 0.173670 0.210710 0.355170 0.260449 0.015720 0.315208 0.466476 0.202596 0.037126 0.231775 0.006772 0.724328 0.000794 0.942800 0.001192 0.055214 0.974119 0.015535 0.004466 0.005880 0.034056 0.958145 0.007498 0.000300 0.000300 0.007498 0.958145 0.034056 0.005880 0.004466 0.015535 0.974119 0.055214 0.001192 0.942800 0.000794 0.724328 0.006772 0.231775 0.037126 0.228203 0.408269 0.142148 0.221381 0.187041 0.188786 0.278290 0.345884 0.197183 0.304611 0.244864 0.253342 0.320389 0.130670 0.161435 0.387506 0.242041 0.222553 0.113615 0.421791 0.298329 0.324534 0.175329 0.201809 0.347837 0.403713 0.112349 0.136102 Consensus sequence: DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM ------DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Reverse Complement Backward 4 10 0.014001 Species: Mus musculus Original motif 0.306209 0.232705 0.244475 0.216611 0.165668 0.171480 0.222584 0.440269 0.213008 0.429038 0.156385 0.201569 0.283226 0.329518 0.160795 0.226461 0.439156 0.283517 0.251270 0.026056 0.014994 0.980987 0.000714 0.003304 0.975741 0.020182 0.002909 0.001168 0.000926 0.191353 0.801648 0.006073 0.015382 0.090853 0.893043 0.000721 0.001549 0.005912 0.001713 0.990826 0.004000 0.000857 0.989667 0.005475 0.016957 0.663726 0.148127 0.171190 0.299047 0.091156 0.448649 0.161148 0.354701 0.214677 0.236757 0.193865 0.399446 0.174508 0.200036 0.226009 0.303545 0.277435 0.200094 0.218926 0.380242 0.148876 0.163367 0.307514 Consensus sequence: VBHHVCAGGTGCDVDHD Reverse complement motif 0.307514 0.148876 0.163367 0.380242 0.218926 0.277435 0.200094 0.303545 0.226009 0.174508 0.200036 0.399446 0.193865 0.214677 0.236757 0.354701 0.299047 0.448649 0.091156 0.161148 0.016957 0.148127 0.663726 0.171190 0.004000 0.989667 0.000857 0.005475 0.990826 0.005912 0.001713 0.001549 0.015382 0.893043 0.090853 0.000721 0.000926 0.801648 0.191353 0.006073 0.001168 0.020182 0.002909 0.975741 0.014994 0.000714 0.980987 0.003304 0.026056 0.283517 0.251270 0.439156 0.283226 0.160795 0.329518 0.226461 0.213008 0.156385 0.429038 0.201569 0.440269 0.171480 0.222584 0.165668 0.216611 0.232705 0.244475 0.306209 Consensus sequence: DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB ----VGCACGTGGH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Original Motif Backward 3 10 0.030891 Species: Mus musculus Original motif 0.127991 0.202889 0.399822 0.269298 0.156940 0.244015 0.182364 0.416681 0.046494 0.050598 0.744311 0.158596 0.196142 0.365183 0.183389 0.255286 0.019306 0.946805 0.015210 0.018680 0.924839 0.022113 0.027620 0.025428 0.007478 0.672138 0.027789 0.292595 0.046702 0.026044 0.906146 0.021107 0.117335 0.610863 0.025132 0.246670 0.044431 0.053581 0.722748 0.179240 0.543713 0.149809 0.190030 0.116447 0.241148 0.722386 0.022547 0.013919 0.265412 0.113032 0.270602 0.350954 0.226186 0.143504 0.332746 0.297564 Consensus sequence: BBGHCACGCGACDD Reverse complement motif 0.226186 0.332746 0.143504 0.297564 0.350954 0.113032 0.270602 0.265412 0.241148 0.022547 0.722386 0.013919 0.116447 0.149809 0.190030 0.543713 0.044431 0.722748 0.053581 0.179240 0.117335 0.025132 0.610863 0.246670 0.046702 0.906146 0.026044 0.021107 0.007478 0.027789 0.672138 0.292595 0.025428 0.022113 0.027620 0.924839 0.019306 0.015210 0.946805 0.018680 0.196142 0.183389 0.365183 0.255286 0.046494 0.744311 0.050598 0.158596 0.416681 0.244015 0.182364 0.156940 0.127991 0.399822 0.202889 0.269298 Consensus sequence: HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD --VGCACGTGGH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Reverse Complement Original Motif Backward 4 10 0.031172 Species: Mus musculus Original motif 0.142834 0.324493 0.147276 0.385397 0.404842 0.233186 0.227659 0.134313 0.677580 0.044952 0.178774 0.098695 0.137761 0.202622 0.469728 0.189889 0.069301 0.825888 0.093549 0.011262 0.003882 0.876858 0.000966 0.118295 0.904355 0.015154 0.001043 0.079449 0.018912 0.977464 0.001207 0.002417 0.003517 0.004393 0.002428 0.989662 0.007151 0.162279 0.000584 0.829986 0.192074 0.120883 0.670840 0.016203 0.881358 0.002039 0.013253 0.103349 0.450016 0.333144 0.184121 0.032719 0.342018 0.321148 0.066945 0.269889 0.209486 0.122118 0.046367 0.622029 0.174564 0.145894 0.048004 0.631539 Consensus sequence: BVABCCACTTGAMHTT Reverse complement motif 0.631539 0.145894 0.048004 0.174564 0.622029 0.122118 0.046367 0.209486 0.269889 0.321148 0.066945 0.342018 0.032719 0.333144 0.184121 0.450016 0.103349 0.002039 0.013253 0.881358 0.192074 0.670840 0.120883 0.016203 0.829986 0.162279 0.000584 0.007151 0.989662 0.004393 0.002428 0.003517 0.018912 0.001207 0.977464 0.002417 0.079449 0.015154 0.001043 0.904355 0.003882 0.000966 0.876858 0.118295 0.069301 0.093549 0.825888 0.011262 0.137761 0.469728 0.202622 0.189889 0.098695 0.044952 0.178774 0.677580 0.134313 0.233186 0.227659 0.404842 0.385397 0.324493 0.147276 0.142834 Consensus sequence: AAHYTCAAGTGGBTBV Alignment: BVABCCACTTGAMHTT ---DCCACGTGCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Reverse Complement Original Motif Backward 4 10 0.031308 Species: Mus musculus Original motif 0.284346 0.280937 0.138180 0.296538 0.399663 0.110464 0.327481 0.162392 0.637560 0.029806 0.218321 0.114314 0.184898 0.144379 0.370828 0.299895 0.017459 0.862111 0.118223 0.002207 0.001004 0.958164 0.000888 0.039945 0.947796 0.011499 0.000413 0.040291 0.024268 0.973476 0.000709 0.001546 0.002616 0.001901 0.003337 0.992147 0.006742 0.071290 0.000276 0.921691 0.393078 0.093424 0.490620 0.022879 0.870162 0.007294 0.051952 0.070591 0.632449 0.156278 0.172644 0.038628 0.362798 0.126579 0.085796 0.424828 0.132810 0.206405 0.025084 0.635702 0.094708 0.272324 0.087702 0.545267 Consensus sequence: HDADCCACTTRAAWTT Reverse complement motif 0.545267 0.272324 0.087702 0.094708 0.635702 0.206405 0.025084 0.132810 0.424828 0.126579 0.085796 0.362798 0.038628 0.156278 0.172644 0.632449 0.070591 0.007294 0.051952 0.870162 0.393078 0.490620 0.093424 0.022879 0.921691 0.071290 0.000276 0.006742 0.992147 0.001901 0.003337 0.002616 0.024268 0.000709 0.973476 0.001546 0.040291 0.011499 0.000413 0.947796 0.001004 0.000888 0.958164 0.039945 0.017459 0.118223 0.862111 0.002207 0.184898 0.370828 0.144379 0.299895 0.114314 0.029806 0.218321 0.637560 0.162392 0.110464 0.327481 0.399663 0.296538 0.280937 0.138180 0.284346 Consensus sequence: AAWTTMAAGTGGHTDH Alignment: HDADCCACTTRAAWTT ---DCCACGTGCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Reverse Complement Original Motif Backward 5 10 0.033485 Species: Mus musculus Original motif 0.299323 0.258429 0.141957 0.300291 0.267631 0.143882 0.146933 0.441554 0.482614 0.212022 0.233631 0.071733 0.430836 0.073912 0.334439 0.160813 0.124944 0.704331 0.166815 0.003910 0.001941 0.876479 0.000828 0.120752 0.920202 0.005985 0.000456 0.073357 0.023544 0.974093 0.000859 0.001505 0.005010 0.003098 0.001328 0.990564 0.003250 0.198149 0.000490 0.798110 0.134659 0.104976 0.753464 0.006901 0.932490 0.000724 0.006140 0.060646 0.504530 0.106203 0.360995 0.028271 0.673257 0.074893 0.106536 0.145314 0.356324 0.097610 0.230142 0.315924 0.129483 0.188353 0.203623 0.478542 0.289071 0.157675 0.231909 0.321345 Consensus sequence: HDVRCCACTTGARADBD Reverse complement motif 0.321345 0.157675 0.231909 0.289071 0.478542 0.188353 0.203623 0.129483 0.315924 0.097610 0.230142 0.356324 0.145314 0.074893 0.106536 0.673257 0.028271 0.106203 0.360995 0.504530 0.060646 0.000724 0.006140 0.932490 0.134659 0.753464 0.104976 0.006901 0.798110 0.198149 0.000490 0.003250 0.990564 0.003098 0.001328 0.005010 0.023544 0.000859 0.974093 0.001505 0.073357 0.005985 0.000456 0.920202 0.001941 0.000828 0.876479 0.120752 0.124944 0.166815 0.704331 0.003910 0.160813 0.073912 0.334439 0.430836 0.071733 0.212022 0.233631 0.482614 0.441554 0.143882 0.146933 0.267631 0.300291 0.258429 0.141957 0.299323 Consensus sequence: DVDTKTCAAGTGGKBDH Alignment: HDVRCCACTTGARADBD ---DCCACGTGCV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00147 Nkx2-6 Reverse Complement Original Motif Backward 4 10 0.034555 Species: Mus musculus Original motif 0.217416 0.196318 0.223786 0.362479 0.398508 0.155537 0.270546 0.175410 0.791392 0.022106 0.126944 0.059558 0.211671 0.145452 0.349401 0.293476 0.023830 0.847357 0.127125 0.001688 0.001426 0.942475 0.000495 0.055604 0.969354 0.001012 0.000987 0.028646 0.017358 0.980969 0.000778 0.000894 0.001816 0.004181 0.001573 0.992430 0.000925 0.059099 0.000431 0.939544 0.670672 0.011130 0.312570 0.005628 0.757147 0.010903 0.032137 0.199813 0.335600 0.359053 0.277277 0.028070 0.440449 0.199116 0.111993 0.248442 0.126577 0.210049 0.039661 0.623714 0.088481 0.233166 0.032706 0.645647 Consensus sequence: DDADCCACTTAAVHTT Reverse complement motif 0.645647 0.233166 0.032706 0.088481 0.623714 0.210049 0.039661 0.126577 0.248442 0.199116 0.111993 0.440449 0.335600 0.277277 0.359053 0.028070 0.199813 0.010903 0.032137 0.757147 0.005628 0.011130 0.312570 0.670672 0.939544 0.059099 0.000431 0.000925 0.992430 0.004181 0.001573 0.001816 0.017358 0.000778 0.980969 0.000894 0.028646 0.001012 0.000987 0.969354 0.001426 0.000495 0.942475 0.055604 0.023830 0.127125 0.847357 0.001688 0.211671 0.349401 0.145452 0.293476 0.059558 0.022106 0.126944 0.791392 0.175410 0.155537 0.270546 0.398508 0.362479 0.196318 0.223786 0.217416 Consensus sequence: AAHVTTAAGTGGHTDD Alignment: DDADCCACTTAAVHTT ---DCCACGTGCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Original Motif Forward 6 10 0.036382 Species: Mus musculus Original motif 0.298336 0.418632 0.208054 0.074978 0.289907 0.015608 0.457100 0.237385 0.273583 0.077889 0.107860 0.540668 0.184954 0.161611 0.384390 0.269045 0.521826 0.156340 0.089019 0.232815 0.356716 0.131104 0.394857 0.117323 0.266669 0.108765 0.505273 0.119293 0.020778 0.047199 0.919524 0.012500 0.948536 0.018775 0.008113 0.024576 0.010822 0.964042 0.014701 0.010434 0.007428 0.019505 0.966351 0.006717 0.010025 0.975678 0.008648 0.005649 0.043796 0.120935 0.742979 0.092289 0.008252 0.250704 0.541132 0.199913 0.474428 0.044681 0.134430 0.346461 0.146597 0.421317 0.143166 0.288920 0.020540 0.181479 0.553811 0.244170 0.129612 0.173360 0.535219 0.161808 0.506084 0.158156 0.130983 0.204776 0.054872 0.103043 0.545792 0.296293 0.389882 0.171037 0.164162 0.274918 0.225861 0.314031 0.288872 0.171237 Consensus sequence: VDWDARRGACGCGGWHGGAKHV Reverse complement motif 0.225861 0.288872 0.314031 0.171237 0.274918 0.171037 0.164162 0.389882 0.054872 0.545792 0.103043 0.296293 0.204776 0.158156 0.130983 0.506084 0.129612 0.535219 0.173360 0.161808 0.020540 0.553811 0.181479 0.244170 0.146597 0.143166 0.421317 0.288920 0.346461 0.044681 0.134430 0.474428 0.008252 0.541132 0.250704 0.199913 0.043796 0.742979 0.120935 0.092289 0.010025 0.008648 0.975678 0.005649 0.007428 0.966351 0.019505 0.006717 0.010822 0.014701 0.964042 0.010434 0.024576 0.018775 0.008113 0.948536 0.020778 0.919524 0.047199 0.012500 0.266669 0.505273 0.108765 0.119293 0.356716 0.394857 0.131104 0.117323 0.232815 0.156340 0.089019 0.521826 0.184954 0.384390 0.161611 0.269045 0.540668 0.077889 0.107860 0.273583 0.289907 0.457100 0.015608 0.237385 0.298336 0.208054 0.418632 0.074978 Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV -----VGCACGTGGH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 11 Motif name: NR4A2 Original motif 0.615385 0.076923 0.230769 0.076923 0.928571 0.000000 0.071429 0.000000 0.000000 0.000000 0.928571 0.071429 0.214286 0.000000 0.785714 0.000000 0.142857 0.142857 0.000000 0.714286 0.000000 0.928571 0.000000 0.071429 1.000000 0.000000 0.000000 0.000000 0.230769 0.615385 0.153846 0.000000 Consensus sequence: AAGGTCAC Reserve complement motif 0.230769 0.153846 0.615385 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.928571 0.071429 0.714286 0.142857 0.000000 0.142857 0.214286 0.785714 0.000000 0.000000 0.000000 0.928571 0.000000 0.071429 0.000000 0.000000 0.071429 0.928571 0.076923 0.076923 0.230769 0.615385 Consensus sequence: GTGACCTT ************************************************************************ Best Matches for Motif ID 11 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Reverse Complement Reverse Complement Forward 4 8 0.000000 Species: Mus musculus Original motif 0.222478 0.177331 0.266395 0.333797 0.276222 0.360097 0.118354 0.245327 0.106047 0.268455 0.234217 0.391281 0.244163 0.407141 0.146864 0.201832 0.852083 0.050643 0.039941 0.057332 0.814108 0.012894 0.165984 0.007015 0.905198 0.005648 0.088378 0.000776 0.002783 0.000555 0.988205 0.008457 0.001289 0.000626 0.898209 0.099877 0.002878 0.001631 0.008910 0.986582 0.000499 0.975550 0.005264 0.018687 0.963627 0.000883 0.034432 0.001058 0.181490 0.517766 0.077094 0.223650 0.183789 0.384790 0.308350 0.123071 0.229801 0.228801 0.224468 0.316930 0.218244 0.170273 0.366746 0.244736 Consensus sequence: DHBHAAAGGTCACVHD Reverse complement motif 0.218244 0.366746 0.170273 0.244736 0.316930 0.228801 0.224468 0.229801 0.183789 0.308350 0.384790 0.123071 0.181490 0.077094 0.517766 0.223650 0.001058 0.000883 0.034432 0.963627 0.000499 0.005264 0.975550 0.018687 0.986582 0.001631 0.008910 0.002878 0.001289 0.898209 0.000626 0.099877 0.002783 0.988205 0.000555 0.008457 0.000776 0.005648 0.088378 0.905198 0.007015 0.012894 0.165984 0.814108 0.057332 0.050643 0.039941 0.852083 0.244163 0.146864 0.407141 0.201832 0.391281 0.268455 0.234217 0.106047 0.276222 0.118354 0.360097 0.245327 0.333797 0.177331 0.266395 0.222478 Consensus sequence: HHVGTGACCTTTDVDD Alignment: HHVGTGACCTTTDVDD ---GTGACCTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_primary Original Motif Original Motif Backward 4 8 0.007453 Species: Mus musculus Original motif 0.253408 0.181904 0.273186 0.291502 0.262827 0.381870 0.153734 0.201569 0.143383 0.243233 0.242562 0.370823 0.247498 0.336892 0.176114 0.239496 0.856654 0.037068 0.049492 0.056786 0.797369 0.012935 0.176463 0.013233 0.808222 0.001309 0.189796 0.000674 0.002583 0.000536 0.989167 0.007714 0.002421 0.000283 0.972777 0.024519 0.000270 0.003650 0.019038 0.977041 0.000184 0.956654 0.005329 0.037833 0.925587 0.000706 0.072434 0.001273 0.307028 0.327297 0.079126 0.286549 0.238576 0.245847 0.384025 0.131552 0.281599 0.234987 0.226211 0.257204 0.211511 0.212695 0.363980 0.211815 Consensus sequence: DHBHAAAGGTCAHVHB Reverse complement motif 0.211511 0.363980 0.212695 0.211815 0.257204 0.234987 0.226211 0.281599 0.238576 0.384025 0.245847 0.131552 0.307028 0.079126 0.327297 0.286549 0.001273 0.000706 0.072434 0.925587 0.000184 0.005329 0.956654 0.037833 0.977041 0.003650 0.019038 0.000270 0.002421 0.972777 0.000283 0.024519 0.002583 0.989167 0.000536 0.007714 0.000674 0.001309 0.189796 0.808222 0.013233 0.012935 0.176463 0.797369 0.056786 0.037068 0.049492 0.856654 0.247498 0.176114 0.336892 0.239496 0.370823 0.243233 0.242562 0.143383 0.262827 0.153734 0.381870 0.201569 0.291502 0.181904 0.273186 0.253408 Consensus sequence: BHVDTGACCTTTDVDD Alignment: DHBHAAAGGTCAHVHB -----AAGGTCAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Original Motif Original Motif Backward 5 8 0.015420 Species: Mus musculus Original motif 0.212524 0.177958 0.293723 0.315796 0.420838 0.283140 0.144938 0.151084 0.198119 0.196347 0.260353 0.345181 0.117752 0.282184 0.137207 0.462857 0.070125 0.781439 0.138093 0.010344 0.965989 0.000956 0.023828 0.009227 0.977263 0.003066 0.019255 0.000416 0.007404 0.000267 0.938934 0.053395 0.007147 0.000287 0.983377 0.009190 0.039608 0.000730 0.040682 0.918981 0.000685 0.905345 0.021930 0.072040 0.800961 0.001126 0.195791 0.002121 0.245039 0.241263 0.038084 0.475614 0.265397 0.238316 0.304963 0.191325 0.203742 0.286208 0.231002 0.279048 0.194132 0.188854 0.346693 0.270322 0.310711 0.263840 0.184317 0.241132 Consensus sequence: DHDBCAAGGTCAHVBDH Reverse complement motif 0.241132 0.263840 0.184317 0.310711 0.194132 0.346693 0.188854 0.270322 0.203742 0.231002 0.286208 0.279048 0.265397 0.304963 0.238316 0.191325 0.475614 0.241263 0.038084 0.245039 0.002121 0.001126 0.195791 0.800961 0.000685 0.021930 0.905345 0.072040 0.918981 0.000730 0.040682 0.039608 0.007147 0.983377 0.000287 0.009190 0.007404 0.938934 0.000267 0.053395 0.000416 0.003066 0.019255 0.977263 0.009227 0.000956 0.023828 0.965989 0.070125 0.138093 0.781439 0.010344 0.462857 0.282184 0.137207 0.117752 0.345181 0.196347 0.260353 0.198119 0.151084 0.283140 0.144938 0.420838 0.315796 0.177958 0.293723 0.212524 Consensus sequence: HHBVHTGACCTTGVDHD Alignment: DHDBCAAGGTCAHVBDH -----AAGGTCAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_secondary Original Motif Original Motif Forward 6 8 0.039564 Species: Mus musculus Original motif 0.195749 0.435700 0.196915 0.171636 0.131070 0.131912 0.417834 0.319184 0.238959 0.441529 0.174973 0.144539 0.187749 0.189727 0.405849 0.216675 0.006751 0.541370 0.182092 0.269787 0.005388 0.590608 0.339869 0.064135 0.088153 0.004666 0.902351 0.004830 0.002459 0.004278 0.982637 0.010626 0.003618 0.002504 0.985275 0.008602 0.003325 0.004017 0.009244 0.983414 0.002547 0.972864 0.005345 0.019244 0.940260 0.002927 0.053632 0.003181 0.222459 0.390569 0.251497 0.135475 0.151824 0.258444 0.332866 0.256865 0.175811 0.290583 0.232086 0.301520 0.356690 0.198973 0.136050 0.308287 Consensus sequence: VBVBCSGGGTCAVBBH Reverse complement motif 0.308287 0.198973 0.136050 0.356690 0.301520 0.290583 0.232086 0.175811 0.151824 0.332866 0.258444 0.256865 0.222459 0.251497 0.390569 0.135475 0.003181 0.002927 0.053632 0.940260 0.002547 0.005345 0.972864 0.019244 0.983414 0.004017 0.009244 0.003325 0.003618 0.985275 0.002504 0.008602 0.002459 0.982637 0.004278 0.010626 0.088153 0.902351 0.004666 0.004830 0.005388 0.339869 0.590608 0.064135 0.006751 0.182092 0.541370 0.269787 0.187749 0.405849 0.189727 0.216675 0.238959 0.174973 0.441529 0.144539 0.131070 0.417834 0.131912 0.319184 0.195749 0.196915 0.435700 0.171636 Consensus sequence: HVBVTGACCCSGBVBV Alignment: VBVBCSGGGTCAVBBH -----AAGGTCAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondary Reverse Complement Original Motif Forward 1 8 0.040787 Species: Mus musculus Original motif 0.173063 0.169680 0.440836 0.216421 0.353277 0.179996 0.249403 0.217325 0.307337 0.038055 0.616380 0.038228 0.316636 0.564670 0.023732 0.094962 0.015484 0.923764 0.019439 0.041313 0.011243 0.956300 0.009443 0.023014 0.062273 0.107531 0.010739 0.819456 0.126670 0.201521 0.192005 0.479803 0.093090 0.045924 0.835792 0.025194 0.020165 0.015483 0.009567 0.954786 0.010873 0.672448 0.004559 0.312121 0.018002 0.846860 0.017605 0.117533 0.335703 0.408170 0.104095 0.152031 0.150308 0.362296 0.067408 0.419988 0.286490 0.242211 0.176532 0.294767 0.265022 0.249655 0.272219 0.213104 Consensus sequence: DDGMCCTBGTCCHYHV Reverse complement motif 0.265022 0.272219 0.249655 0.213104 0.294767 0.242211 0.176532 0.286490 0.419988 0.362296 0.067408 0.150308 0.335703 0.104095 0.408170 0.152031 0.018002 0.017605 0.846860 0.117533 0.010873 0.004559 0.672448 0.312121 0.954786 0.015483 0.009567 0.020165 0.093090 0.835792 0.045924 0.025194 0.479803 0.201521 0.192005 0.126670 0.819456 0.107531 0.010739 0.062273 0.011243 0.009443 0.956300 0.023014 0.015484 0.019439 0.923764 0.041313 0.316636 0.023732 0.564670 0.094962 0.307337 0.616380 0.038055 0.038228 0.217325 0.179996 0.249403 0.353277 0.173063 0.440836 0.169680 0.216421 Consensus sequence: VHMDGGACVAGGRCDH Alignment: DDGMCCTBGTCCHYHV GTGACCTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Reverse Complement Original Motif Forward 5 8 0.042293 Species: Mus musculus Original motif 0.235299 0.222264 0.237416 0.305021 0.144778 0.278902 0.341673 0.234648 0.261127 0.261904 0.191591 0.285378 0.119943 0.410774 0.218940 0.250343 0.222672 0.075554 0.365253 0.336521 0.001838 0.046904 0.002828 0.948430 0.030410 0.006359 0.960821 0.002410 0.987391 0.007562 0.002810 0.002237 0.105188 0.888650 0.001163 0.004998 0.006475 0.987074 0.001793 0.004659 0.001816 0.765138 0.003092 0.229953 0.010354 0.846496 0.029899 0.113251 0.328732 0.039382 0.265510 0.366377 0.209638 0.262628 0.145613 0.382121 0.385390 0.177695 0.299828 0.137087 0.403452 0.268924 0.096028 0.231595 0.203082 0.231812 0.213520 0.351585 Consensus sequence: DBHBDTGACCCCDHVHB Reverse complement motif 0.351585 0.231812 0.213520 0.203082 0.231595 0.268924 0.096028 0.403452 0.137087 0.177695 0.299828 0.385390 0.382121 0.262628 0.145613 0.209638 0.366377 0.039382 0.265510 0.328732 0.010354 0.029899 0.846496 0.113251 0.001816 0.003092 0.765138 0.229953 0.006475 0.001793 0.987074 0.004659 0.105188 0.001163 0.888650 0.004998 0.002237 0.007562 0.002810 0.987391 0.030410 0.960821 0.006359 0.002410 0.948430 0.046904 0.002828 0.001838 0.222672 0.365253 0.075554 0.336521 0.119943 0.218940 0.410774 0.250343 0.285378 0.261904 0.191591 0.261127 0.144778 0.341673 0.278902 0.234648 0.305021 0.222264 0.237416 0.235299 Consensus sequence: VHBHDGGGGTCAHBHBD Alignment: DBHBDTGACCCCDHVHB ----GTGACCTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Original Motif Backward 5 8 0.044744 Species: Mus musculus Original motif 0.252126 0.268706 0.351590 0.127578 0.158171 0.083434 0.389646 0.368749 0.180010 0.290882 0.279192 0.249916 0.206905 0.249360 0.275438 0.268296 0.756588 0.046202 0.023921 0.173289 0.018262 0.022596 0.949143 0.010000 0.206468 0.046491 0.745475 0.001566 0.005511 0.001141 0.983152 0.010196 0.004791 0.001893 0.985951 0.007365 0.027643 0.001133 0.008565 0.962659 0.002459 0.970934 0.007826 0.018780 0.924387 0.003164 0.071225 0.001224 0.419387 0.230189 0.111588 0.238836 0.290954 0.163823 0.341233 0.203991 0.196768 0.281307 0.313868 0.208056 0.128428 0.260428 0.378607 0.232537 0.269305 0.378895 0.123480 0.228320 Consensus sequence: VKBBAGGGGTCAHDBBH Reverse complement motif 0.269305 0.123480 0.378895 0.228320 0.128428 0.378607 0.260428 0.232537 0.196768 0.313868 0.281307 0.208056 0.290954 0.341233 0.163823 0.203991 0.238836 0.230189 0.111588 0.419387 0.001224 0.003164 0.071225 0.924387 0.002459 0.007826 0.970934 0.018780 0.962659 0.001133 0.008565 0.027643 0.004791 0.985951 0.001893 0.007365 0.005511 0.983152 0.001141 0.010196 0.206468 0.745475 0.046491 0.001566 0.018262 0.949143 0.022596 0.010000 0.173289 0.046202 0.023921 0.756588 0.206905 0.275438 0.249360 0.268296 0.180010 0.279192 0.290882 0.249916 0.158171 0.389646 0.083434 0.368749 0.252126 0.351590 0.268706 0.127578 Consensus sequence: DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH -----AAGGTCAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_secondary Original Motif Original Motif Forward 6 8 0.048142 Species: Mus musculus Original motif 0.131680 0.169949 0.346277 0.352094 0.109910 0.144258 0.373681 0.372151 0.196671 0.411335 0.159689 0.232305 0.311086 0.307077 0.122332 0.259505 0.895155 0.013238 0.038874 0.052733 0.779629 0.018399 0.171269 0.030703 0.950546 0.002649 0.041825 0.004980 0.004769 0.002646 0.985847 0.006739 0.004458 0.002117 0.012011 0.981414 0.016789 0.969626 0.003890 0.009695 0.002468 0.982852 0.004754 0.009926 0.891448 0.003193 0.097548 0.007811 0.513330 0.308971 0.070467 0.107232 0.179371 0.115514 0.130898 0.574217 0.285826 0.277536 0.166982 0.269655 0.319407 0.227783 0.129020 0.323790 Consensus sequence: BBHHAAAGTCCAMTHH Reverse complement motif 0.323790 0.227783 0.129020 0.319407 0.269655 0.277536 0.166982 0.285826 0.574217 0.115514 0.130898 0.179371 0.107232 0.308971 0.070467 0.513330 0.007811 0.003193 0.097548 0.891448 0.002468 0.004754 0.982852 0.009926 0.016789 0.003890 0.969626 0.009695 0.981414 0.002117 0.012011 0.004458 0.004769 0.985847 0.002646 0.006739 0.004980 0.002649 0.041825 0.950546 0.030703 0.018399 0.171269 0.779629 0.052733 0.013238 0.038874 0.895155 0.259505 0.307077 0.122332 0.311086 0.196671 0.159689 0.411335 0.232305 0.109910 0.373681 0.144258 0.372151 0.352094 0.169949 0.346277 0.131680 Consensus sequence: HHAYTGGACTTTHDBV Alignment: BBHHAAAGTCCAMTHH -----AAGGTCAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00197 Hoxc9 Reverse Complement Reverse Complement Forward 8 8 0.049768 Species: Mus musculus Original motif 0.279588 0.205946 0.337877 0.176588 0.212819 0.121136 0.376165 0.289881 0.371836 0.224291 0.240111 0.163762 0.200999 0.056254 0.589311 0.153436 0.141203 0.048864 0.796449 0.013484 0.026376 0.197045 0.009146 0.767433 0.286968 0.688278 0.011985 0.012769 0.890619 0.006181 0.098071 0.005129 0.019680 0.011114 0.002539 0.966668 0.287238 0.007432 0.002166 0.703164 0.975510 0.006204 0.005667 0.012620 0.949137 0.017111 0.006224 0.027528 0.241729 0.296577 0.052768 0.408926 0.212400 0.269675 0.090007 0.427918 0.333376 0.091783 0.259582 0.315259 0.182024 0.203528 0.245531 0.368917 Consensus sequence: VDVGGTCATTAAHHDB Reverse complement motif 0.368917 0.203528 0.245531 0.182024 0.315259 0.091783 0.259582 0.333376 0.427918 0.269675 0.090007 0.212400 0.408926 0.296577 0.052768 0.241729 0.027528 0.017111 0.006224 0.949137 0.012620 0.006204 0.005667 0.975510 0.703164 0.007432 0.002166 0.287238 0.966668 0.011114 0.002539 0.019680 0.005129 0.006181 0.098071 0.890619 0.286968 0.011985 0.688278 0.012769 0.767433 0.197045 0.009146 0.026376 0.141203 0.796449 0.048864 0.013484 0.200999 0.589311 0.056254 0.153436 0.163762 0.224291 0.240111 0.371836 0.212819 0.376165 0.121136 0.289881 0.279588 0.337877 0.205946 0.176588 Consensus sequence: VDHHTTAATGACCBHV Alignment: VDHHTTAATGACCBHV -------GTGACCTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_secondary Reverse Complement Original Motif Forward 5 8 0.050006 Species: Mus musculus Original motif 0.204898 0.149951 0.363373 0.281778 0.112946 0.243700 0.437938 0.205417 0.205232 0.182319 0.383143 0.229305 0.242063 0.152491 0.296426 0.309020 0.312922 0.028523 0.585026 0.073529 0.006754 0.011178 0.005346 0.976723 0.127589 0.005562 0.859436 0.007414 0.010046 0.974694 0.007001 0.008259 0.010262 0.974769 0.006069 0.008899 0.015122 0.966101 0.007970 0.010807 0.556511 0.167389 0.114635 0.161465 0.586459 0.044786 0.073450 0.295305 0.297710 0.194666 0.223655 0.283969 0.303202 0.250809 0.206475 0.239514 0.279338 0.160655 0.314457 0.245550 0.266477 0.266890 0.299970 0.166662 Consensus sequence: DBDDRTGCCCAWDHDV Reverse complement motif 0.266477 0.299970 0.266890 0.166662 0.279338 0.314457 0.160655 0.245550 0.239514 0.250809 0.206475 0.303202 0.283969 0.194666 0.223655 0.297710 0.295305 0.044786 0.073450 0.586459 0.161465 0.167389 0.114635 0.556511 0.015122 0.007970 0.966101 0.010807 0.010262 0.006069 0.974769 0.008899 0.010046 0.007001 0.974694 0.008259 0.127589 0.859436 0.005562 0.007414 0.976723 0.011178 0.005346 0.006754 0.312922 0.585026 0.028523 0.073529 0.309020 0.152491 0.296426 0.242063 0.205232 0.383143 0.182319 0.229305 0.112946 0.437938 0.243700 0.205417 0.204898 0.363373 0.149951 0.281778 Consensus sequence: VHHDWTGGGCAMDHBH Alignment: DBDDRTGCCCAWDHDV ----GTGACCTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 13 Motif name: MIZF Original motif 0.100000 0.300000 0.250000 0.350000 0.650000 0.050000 0.000000 0.300000 1.000000 0.000000 0.000000 0.000000 0.100000 0.850000 0.050000 0.000000 0.000000 0.000000 0.950000 0.050000 0.000000 0.050000 0.000000 0.950000 0.000000 0.950000 0.000000 0.050000 0.000000 0.900000 0.100000 0.000000 0.000000 0.000000 0.950000 0.050000 0.100000 0.650000 0.050000 0.200000 Consensus sequence: BAACGTCCGC Reserve complement motif 0.100000 0.050000 0.650000 0.200000 0.000000 0.950000 0.000000 0.050000 0.000000 0.100000 0.900000 0.000000 0.000000 0.000000 0.950000 0.050000 0.950000 0.050000 0.000000 0.000000 0.000000 0.950000 0.000000 0.050000 0.100000 0.050000 0.850000 0.000000 0.000000 0.000000 0.000000 1.000000 0.300000 0.050000 0.000000 0.650000 0.350000 0.300000 0.250000 0.100000 Consensus sequence: GCGGACGTTV ************************************************************************ Best Matches for Motif ID 13 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00419 Spic Original Motif Reverse Complement Forward 1 10 0.000000 Species: Mus musculus Original motif 0.372554 0.181557 0.296001 0.149888 0.734552 0.057250 0.044752 0.163446 0.707604 0.045049 0.110341 0.137006 0.637848 0.057252 0.071934 0.232966 0.125449 0.108933 0.689441 0.076176 0.266215 0.517339 0.207018 0.009428 0.015016 0.002582 0.979670 0.002732 0.004303 0.002322 0.989973 0.003401 0.982327 0.003552 0.003393 0.010727 0.974155 0.001662 0.003294 0.020889 0.040023 0.128522 0.821560 0.009894 0.027635 0.045828 0.016297 0.910239 0.317500 0.045635 0.172234 0.464631 0.342838 0.107812 0.284775 0.264576 Consensus sequence: VAAAGMGGAAGTWD Reverse complement motif 0.264576 0.107812 0.284775 0.342838 0.464631 0.045635 0.172234 0.317500 0.910239 0.045828 0.016297 0.027635 0.040023 0.821560 0.128522 0.009894 0.020889 0.001662 0.003294 0.974155 0.010727 0.003552 0.003393 0.982327 0.004303 0.989973 0.002322 0.003401 0.015016 0.979670 0.002582 0.002732 0.266215 0.207018 0.517339 0.009428 0.125449 0.689441 0.108933 0.076176 0.232966 0.057252 0.071934 0.637848 0.137006 0.045049 0.110341 0.707604 0.163446 0.057250 0.044752 0.734552 0.149888 0.181557 0.296001 0.372554 Consensus sequence: DWACTTCCRCTTTB Alignment: VAAAGMGGAAGTWD BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Original Motif Reverse Complement Forward 1 10 0.003800 Species: Mus musculus Original motif 0.179167 0.229135 0.279326 0.312372 0.421239 0.102900 0.145609 0.330252 0.791978 0.009721 0.028951 0.169350 0.237609 0.375543 0.161526 0.225321 0.145845 0.325411 0.516045 0.012699 0.431007 0.516333 0.051679 0.000982 0.005750 0.001408 0.990928 0.001915 0.002025 0.001886 0.992021 0.004068 0.986405 0.001705 0.001039 0.010851 0.950652 0.003619 0.000482 0.045248 0.165221 0.013897 0.819076 0.001805 0.032042 0.049374 0.014632 0.903953 0.285325 0.108010 0.127373 0.479292 0.366131 0.141246 0.290661 0.201963 Consensus sequence: BWAHSMGGAAGTWD Reverse complement motif 0.201963 0.141246 0.290661 0.366131 0.479292 0.108010 0.127373 0.285325 0.903953 0.049374 0.014632 0.032042 0.165221 0.819076 0.013897 0.001805 0.045248 0.003619 0.000482 0.950652 0.010851 0.001705 0.001039 0.986405 0.002025 0.992021 0.001886 0.004068 0.005750 0.990928 0.001408 0.001915 0.431007 0.051679 0.516333 0.000982 0.145845 0.516045 0.325411 0.012699 0.237609 0.161526 0.375543 0.225321 0.169350 0.009721 0.028951 0.791978 0.330252 0.102900 0.145609 0.421239 0.312372 0.229135 0.279326 0.179167 Consensus sequence: DWACTTCCRSDTWV Alignment: BWAHSMGGAAGTWD BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Original Motif Original Motif Backward 5 10 0.012410 Species: Mus musculus Original motif 0.349744 0.139466 0.209326 0.301464 0.080478 0.359482 0.307083 0.252956 0.145756 0.213763 0.350557 0.289924 0.317307 0.199359 0.096089 0.387245 0.868576 0.009724 0.088821 0.032878 0.001975 0.827004 0.014159 0.156862 0.045494 0.000985 0.001907 0.951615 0.011012 0.001203 0.002186 0.985599 0.002743 0.992908 0.002226 0.002123 0.001498 0.990840 0.001556 0.006106 0.000951 0.005138 0.880591 0.113319 0.003127 0.107962 0.867980 0.020930 0.156602 0.055355 0.396563 0.391480 0.421246 0.049379 0.084495 0.444880 0.223879 0.068063 0.203809 0.504249 0.144100 0.323579 0.131544 0.400777 Consensus sequence: DBBHACTTCCGGKWTH Reverse complement motif 0.400777 0.323579 0.131544 0.144100 0.504249 0.068063 0.203809 0.223879 0.444880 0.049379 0.084495 0.421246 0.156602 0.396563 0.055355 0.391480 0.003127 0.867980 0.107962 0.020930 0.000951 0.880591 0.005138 0.113319 0.001498 0.001556 0.990840 0.006106 0.002743 0.002226 0.992908 0.002123 0.985599 0.001203 0.002186 0.011012 0.951615 0.000985 0.001907 0.045494 0.001975 0.014159 0.827004 0.156862 0.032878 0.009724 0.088821 0.868576 0.387245 0.199359 0.096089 0.317307 0.145756 0.350557 0.213763 0.289924 0.080478 0.307083 0.359482 0.252956 0.301464 0.139466 0.209326 0.349744 Consensus sequence: HAWYCCGGAAGTHBBD Alignment: DBBHACTTCCGGKWTH --BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Original Motif Original Motif Forward 3 10 0.012835 Species: Mus musculus Original motif 0.381592 0.198656 0.201326 0.218426 0.091509 0.331644 0.302830 0.274017 0.165404 0.272650 0.352528 0.209418 0.322145 0.255685 0.129399 0.292771 0.853490 0.012857 0.078563 0.055090 0.002655 0.792907 0.026436 0.178002 0.058923 0.001063 0.002976 0.937038 0.014944 0.001369 0.002865 0.980822 0.003786 0.992305 0.002102 0.001807 0.001365 0.988969 0.001554 0.008111 0.001527 0.009592 0.891056 0.097824 0.003671 0.143708 0.836117 0.016503 0.242982 0.061527 0.305342 0.390148 0.426709 0.117673 0.096260 0.359357 0.202520 0.113885 0.262005 0.421589 0.137957 0.359367 0.163919 0.338758 Consensus sequence: DBBHACTTCCGGDWDB Reverse complement motif 0.137957 0.163919 0.359367 0.338758 0.421589 0.113885 0.262005 0.202520 0.359357 0.117673 0.096260 0.426709 0.390148 0.061527 0.305342 0.242982 0.003671 0.836117 0.143708 0.016503 0.001527 0.891056 0.009592 0.097824 0.001365 0.001554 0.988969 0.008111 0.003786 0.002102 0.992305 0.001807 0.980822 0.001369 0.002865 0.014944 0.937038 0.001063 0.002976 0.058923 0.002655 0.026436 0.792907 0.178002 0.055090 0.012857 0.078563 0.853490 0.292771 0.255685 0.129399 0.322145 0.165404 0.352528 0.272650 0.209418 0.091509 0.302830 0.331644 0.274017 0.218426 0.198656 0.201326 0.381592 Consensus sequence: BDWDCCGGAAGTHBBD Alignment: DBBHACTTCCGGDWDB --BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00085 Sfpi1_primary Original Motif Reverse Complement Forward 1 10 0.014152 Species: Mus musculus Original motif 0.211586 0.273653 0.234763 0.279998 0.298032 0.104818 0.290385 0.306764 0.593467 0.048056 0.154602 0.203875 0.459746 0.052697 0.169949 0.317608 0.188623 0.155357 0.591543 0.064477 0.402746 0.286227 0.290285 0.020742 0.048569 0.001240 0.946397 0.003793 0.004354 0.001387 0.990819 0.003441 0.974272 0.001416 0.001466 0.022847 0.938748 0.003090 0.000833 0.057329 0.045831 0.270321 0.674644 0.009204 0.055664 0.092552 0.026061 0.825722 0.301235 0.122653 0.267039 0.309073 0.278680 0.276099 0.219159 0.226061 Consensus sequence: BDAWGVGGAAGTDH Reverse complement motif 0.226061 0.276099 0.219159 0.278680 0.309073 0.122653 0.267039 0.301235 0.825722 0.092552 0.026061 0.055664 0.045831 0.674644 0.270321 0.009204 0.057329 0.003090 0.000833 0.938748 0.022847 0.001416 0.001466 0.974272 0.004354 0.990819 0.001387 0.003441 0.048569 0.946397 0.001240 0.003793 0.020742 0.286227 0.290285 0.402746 0.188623 0.591543 0.155357 0.064477 0.317608 0.052697 0.169949 0.459746 0.203875 0.048056 0.154602 0.593467 0.306764 0.104818 0.290385 0.298032 0.279998 0.273653 0.234763 0.211586 Consensus sequence: HDACTTCCBCWTDV Alignment: HDACTTCCBCWTDV BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00423 Gm5454 Reverse Complement Reverse Complement Forward 5 10 0.014467 Species: Mus musculus Original motif 0.189373 0.396200 0.238705 0.175722 0.271321 0.176458 0.265627 0.286594 0.266229 0.324575 0.201073 0.208123 0.468162 0.220280 0.143160 0.168399 0.828556 0.009006 0.155963 0.006475 0.000965 0.820477 0.022769 0.155789 0.259255 0.001186 0.002221 0.737339 0.006364 0.001548 0.002346 0.989741 0.002267 0.993010 0.002221 0.002502 0.002365 0.993176 0.001987 0.002473 0.000528 0.001790 0.953300 0.044382 0.002238 0.032836 0.958384 0.006542 0.230236 0.143256 0.029199 0.597309 0.285226 0.282789 0.207699 0.224286 0.271642 0.251065 0.289590 0.187703 0.219881 0.390525 0.157704 0.231890 Consensus sequence: VDHHACTTCCGGTHVH Reverse complement motif 0.219881 0.157704 0.390525 0.231890 0.271642 0.289590 0.251065 0.187703 0.224286 0.282789 0.207699 0.285226 0.597309 0.143256 0.029199 0.230236 0.002238 0.958384 0.032836 0.006542 0.000528 0.953300 0.001790 0.044382 0.002365 0.001987 0.993176 0.002473 0.002267 0.002221 0.993010 0.002502 0.989741 0.001548 0.002346 0.006364 0.737339 0.001186 0.002221 0.259255 0.000965 0.022769 0.820477 0.155789 0.006475 0.009006 0.155963 0.828556 0.168399 0.220280 0.143160 0.468162 0.266229 0.201073 0.324575 0.208123 0.286594 0.176458 0.265627 0.271321 0.189373 0.238705 0.396200 0.175722 Consensus sequence: DVHACCGGAAGTHDDV Alignment: DVHACCGGAAGTHDDV ----GCGGACGTTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00412 Etv5 Reverse Complement Reverse Complement Backward 3 10 0.015583 Species: Mus musculus Original motif 0.163863 0.478739 0.234818 0.122579 0.298203 0.128058 0.250907 0.322832 0.304907 0.352627 0.141386 0.201081 0.505689 0.209260 0.108917 0.176133 0.755659 0.019470 0.214957 0.009914 0.001392 0.808267 0.034638 0.155703 0.341720 0.002244 0.003969 0.652068 0.011512 0.000955 0.002369 0.985163 0.003522 0.992404 0.002813 0.001261 0.002303 0.993216 0.002157 0.002324 0.000502 0.002139 0.938005 0.059354 0.004246 0.041666 0.947484 0.006604 0.177758 0.143265 0.023436 0.655542 0.278473 0.235398 0.218872 0.267257 0.225212 0.275898 0.211908 0.286982 0.193184 0.385135 0.190634 0.231048 Consensus sequence: VDHAACWTCCGGTHHH Reverse complement motif 0.193184 0.190634 0.385135 0.231048 0.286982 0.275898 0.211908 0.225212 0.267257 0.235398 0.218872 0.278473 0.655542 0.143265 0.023436 0.177758 0.004246 0.947484 0.041666 0.006604 0.000502 0.938005 0.002139 0.059354 0.002303 0.002157 0.993216 0.002324 0.003522 0.002813 0.992404 0.001261 0.985163 0.000955 0.002369 0.011512 0.652068 0.002244 0.003969 0.341720 0.001392 0.034638 0.808267 0.155703 0.009914 0.019470 0.214957 0.755659 0.176133 0.209260 0.108917 0.505689 0.304907 0.141386 0.352627 0.201081 0.322832 0.128058 0.250907 0.298203 0.163863 0.234818 0.478739 0.122579 Consensus sequence: DHHACCGGAWGTTDDV Alignment: DHHACCGGAWGTTDDV ----GCGGACGTTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00015 Ehf_primary Reverse Complement Original Motif Forward 6 10 0.016202 Species: Mus musculus Original motif 0.327238 0.304037 0.232174 0.136551 0.198306 0.222758 0.316421 0.262515 0.252373 0.217079 0.267210 0.263337 0.633781 0.039800 0.036914 0.289504 0.160405 0.384709 0.220671 0.234215 0.134205 0.590541 0.266074 0.009179 0.210933 0.755978 0.030378 0.002710 0.011856 0.001472 0.984138 0.002533 0.003235 0.001605 0.989465 0.005695 0.984189 0.002418 0.002842 0.010551 0.884492 0.002651 0.002095 0.110762 0.249047 0.054607 0.690939 0.005407 0.124602 0.154669 0.047597 0.673132 0.375217 0.110561 0.230374 0.283848 0.402951 0.186789 0.219551 0.190710 Consensus sequence: VBDABCCGGAAGTDD Reverse complement motif 0.190710 0.186789 0.219551 0.402951 0.283848 0.110561 0.230374 0.375217 0.673132 0.154669 0.047597 0.124602 0.249047 0.690939 0.054607 0.005407 0.110762 0.002651 0.002095 0.884492 0.010551 0.002418 0.002842 0.984189 0.003235 0.989465 0.001605 0.005695 0.011856 0.984138 0.001472 0.002533 0.210933 0.030378 0.755978 0.002710 0.134205 0.266074 0.590541 0.009179 0.160405 0.220671 0.384709 0.234215 0.289504 0.039800 0.036914 0.633781 0.252373 0.267210 0.217079 0.263337 0.198306 0.316421 0.222758 0.262515 0.136551 0.304037 0.232174 0.327238 Consensus sequence: DDACTTCCGGBTHBB Alignment: VBDABCCGGAAGTDD -----GCGGACGTTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00418 Etv6 Original Motif Original Motif Forward 4 10 0.017123 Species: Mus musculus Original motif 0.354972 0.069107 0.299350 0.276571 0.209701 0.408003 0.227382 0.154914 0.284336 0.375266 0.162604 0.177794 0.176569 0.181438 0.342172 0.299820 0.106551 0.204378 0.060299 0.628772 0.884088 0.003252 0.103113 0.009546 0.001110 0.704391 0.006294 0.288205 0.014992 0.000892 0.001401 0.982714 0.004842 0.001887 0.002470 0.990801 0.002724 0.992864 0.002206 0.002206 0.001792 0.991200 0.001615 0.005393 0.005151 0.010157 0.940259 0.044433 0.017780 0.199839 0.761921 0.020459 0.230834 0.269936 0.119652 0.379577 0.233019 0.093692 0.034743 0.638546 0.194739 0.181763 0.175340 0.448159 0.145452 0.293709 0.335917 0.224922 Consensus sequence: DVHBTACTTCCGGHTHB Reverse complement motif 0.145452 0.335917 0.293709 0.224922 0.448159 0.181763 0.175340 0.194739 0.638546 0.093692 0.034743 0.233019 0.379577 0.269936 0.119652 0.230834 0.017780 0.761921 0.199839 0.020459 0.005151 0.940259 0.010157 0.044433 0.001792 0.001615 0.991200 0.005393 0.002724 0.002206 0.992864 0.002206 0.990801 0.001887 0.002470 0.004842 0.982714 0.000892 0.001401 0.014992 0.001110 0.006294 0.704391 0.288205 0.009546 0.003252 0.103113 0.884088 0.628772 0.204378 0.060299 0.106551 0.176569 0.342172 0.181438 0.299820 0.284336 0.162604 0.375266 0.177794 0.209701 0.227382 0.408003 0.154914 0.276571 0.069107 0.299350 0.354972 Consensus sequence: BHAHCCGGAAGTABDVD Alignment: DVHBTACTTCCGGHTHB ---BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00421 Etv1 Reverse Complement Original Motif Forward 6 10 0.018415 Species: Mus musculus Original motif 0.481848 0.274378 0.165047 0.078727 0.153123 0.322109 0.385794 0.138974 0.257711 0.198309 0.118559 0.425422 0.102329 0.255032 0.373097 0.269542 0.655995 0.027594 0.168796 0.147615 0.012836 0.906067 0.077134 0.003962 0.079806 0.917232 0.002438 0.000524 0.005217 0.001765 0.991859 0.001159 0.001691 0.002097 0.993588 0.002624 0.991087 0.001016 0.001937 0.005961 0.751484 0.005147 0.002324 0.241044 0.112494 0.076460 0.805095 0.005951 0.012019 0.198497 0.022413 0.767071 0.482843 0.140306 0.249898 0.126953 0.298792 0.191769 0.286874 0.222565 0.395216 0.302575 0.172247 0.129961 0.364642 0.219734 0.190320 0.225304 Consensus sequence: MVHBACCGGAAGTVDVH Reverse complement motif 0.225304 0.219734 0.190320 0.364642 0.129961 0.302575 0.172247 0.395216 0.222565 0.191769 0.286874 0.298792 0.126953 0.140306 0.249898 0.482843 0.767071 0.198497 0.022413 0.012019 0.112494 0.805095 0.076460 0.005951 0.241044 0.005147 0.002324 0.751484 0.005961 0.001016 0.001937 0.991087 0.001691 0.993588 0.002097 0.002624 0.005217 0.991859 0.001765 0.001159 0.079806 0.002438 0.917232 0.000524 0.012836 0.077134 0.906067 0.003962 0.147615 0.027594 0.168796 0.655995 0.102329 0.373097 0.255032 0.269542 0.425422 0.198309 0.118559 0.257711 0.153123 0.385794 0.322109 0.138974 0.078727 0.274378 0.165047 0.481848 Consensus sequence: HBDBACTTCCGGTBHVY Alignment: MVHBACCGGAAGTVDVH -----GCGGACGTTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 24 Motif name: ssCCCCGCSssk Original motif 0.000000 0.444444 0.370370 0.185185 0.111111 0.407407 0.333333 0.148148 0.000000 0.888889 0.037037 0.074074 0.000000 0.888889 0.074074 0.037037 0.000000 0.777778 0.222222 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.037037 0.888889 0.000000 0.074074 0.000000 0.703704 0.296296 0.000000 0.000000 0.518519 0.370370 0.111111 0.111111 0.407407 0.259259 0.222222 0.074074 0.222222 0.407407 0.296296 Consensus sequence: SBCCCCGCCSBB Reserve complement motif 0.074074 0.407407 0.222222 0.296296 0.111111 0.259259 0.407407 0.222222 0.000000 0.370370 0.518519 0.111111 0.000000 0.296296 0.703704 0.000000 0.037037 0.000000 0.888889 0.074074 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.222222 0.777778 0.000000 0.000000 0.074074 0.888889 0.037037 0.000000 0.037037 0.888889 0.074074 0.111111 0.333333 0.407407 0.148148 0.000000 0.370370 0.444444 0.185185 Consensus sequence: BBSGGCGGGGBS ************************************************************************ Best Matches for Motif ID 24 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Original Motif Backward 4 12 0.011485 Species: Mus musculus Original motif 0.150668 0.131779 0.245665 0.471887 0.316817 0.287314 0.150829 0.245040 0.256473 0.409066 0.109700 0.224761 0.210646 0.220222 0.345010 0.224122 0.166679 0.508939 0.081676 0.242705 0.049351 0.759380 0.088489 0.102780 0.047598 0.785546 0.121957 0.044898 0.004606 0.944933 0.034696 0.015764 0.040252 0.050652 0.890382 0.018713 0.003038 0.913699 0.022449 0.060814 0.028672 0.941477 0.012276 0.017575 0.635243 0.139731 0.110495 0.114531 0.240016 0.385948 0.182848 0.191188 0.210430 0.274127 0.085171 0.430272 0.088118 0.454598 0.208989 0.248295 0.181269 0.265028 0.149023 0.404680 0.101070 0.252682 0.368542 0.277706 Consensus sequence: DHHBCCCCGCCAHHBHB Reverse complement motif 0.101070 0.368542 0.252682 0.277706 0.404680 0.265028 0.149023 0.181269 0.088118 0.208989 0.454598 0.248295 0.430272 0.274127 0.085171 0.210430 0.240016 0.182848 0.385948 0.191188 0.114531 0.139731 0.110495 0.635243 0.028672 0.012276 0.941477 0.017575 0.003038 0.022449 0.913699 0.060814 0.040252 0.890382 0.050652 0.018713 0.004606 0.034696 0.944933 0.015764 0.047598 0.121957 0.785546 0.044898 0.049351 0.088489 0.759380 0.102780 0.166679 0.081676 0.508939 0.242705 0.210646 0.345010 0.220222 0.224122 0.256473 0.109700 0.409066 0.224761 0.245040 0.287314 0.150829 0.316817 0.471887 0.131779 0.245665 0.150668 Consensus sequence: BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB --SBCCCCGCCSBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Forward 3 12 0.016526 Species: Mus musculus Original motif 0.204514 0.198353 0.171218 0.425915 0.167188 0.296785 0.246082 0.289946 0.267330 0.148001 0.398674 0.185994 0.549386 0.060167 0.337100 0.053347 0.050746 0.900013 0.022169 0.027073 0.037905 0.920332 0.008360 0.033403 0.410356 0.566702 0.016267 0.006675 0.009526 0.982354 0.001060 0.007060 0.204292 0.001084 0.748567 0.046056 0.003955 0.988490 0.002821 0.004735 0.004264 0.988826 0.004311 0.002598 0.002758 0.929549 0.001244 0.066448 0.260332 0.421683 0.024720 0.293265 0.184798 0.247697 0.085237 0.482268 0.347537 0.197344 0.139961 0.315159 0.255281 0.166620 0.242297 0.335802 Consensus sequence: HBDRCCMCGCCCHHHD Reverse complement motif 0.335802 0.166620 0.242297 0.255281 0.315159 0.197344 0.139961 0.347537 0.482268 0.247697 0.085237 0.184798 0.260332 0.024720 0.421683 0.293265 0.002758 0.001244 0.929549 0.066448 0.004264 0.004311 0.988826 0.002598 0.003955 0.002821 0.988490 0.004735 0.204292 0.748567 0.001084 0.046056 0.009526 0.001060 0.982354 0.007060 0.410356 0.016267 0.566702 0.006675 0.037905 0.008360 0.920332 0.033403 0.050746 0.022169 0.900013 0.027073 0.053347 0.060167 0.337100 0.549386 0.267330 0.398674 0.148001 0.185994 0.167188 0.246082 0.296785 0.289946 0.425915 0.198353 0.171218 0.204514 Consensus sequence: DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD --SBCCCCGCCSBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Original Motif Backward 3 12 0.027614 Species: Mus musculus Original motif 0.136946 0.396508 0.135309 0.331236 0.185528 0.417538 0.215409 0.181525 0.171276 0.341901 0.172832 0.313991 0.145641 0.590572 0.146376 0.117412 0.138035 0.660416 0.114016 0.087533 0.222728 0.750532 0.007528 0.019212 0.024633 0.963314 0.001894 0.010159 0.009557 0.979956 0.000642 0.009844 0.010416 0.977424 0.000541 0.011619 0.026401 0.956740 0.001544 0.015314 0.195502 0.755959 0.011060 0.037480 0.491291 0.364785 0.025613 0.118311 0.305153 0.398160 0.071680 0.225008 0.253497 0.232647 0.213246 0.300610 0.156964 0.297876 0.144683 0.400477 0.179549 0.292514 0.319462 0.208475 Consensus sequence: HVBCCCCCCCCMHHHB Reverse complement motif 0.179549 0.319462 0.292514 0.208475 0.400477 0.297876 0.144683 0.156964 0.300610 0.232647 0.213246 0.253497 0.305153 0.071680 0.398160 0.225008 0.118311 0.364785 0.025613 0.491291 0.195502 0.011060 0.755959 0.037480 0.026401 0.001544 0.956740 0.015314 0.010416 0.000541 0.977424 0.011619 0.009557 0.000642 0.979956 0.009844 0.024633 0.001894 0.963314 0.010159 0.222728 0.007528 0.750532 0.019212 0.138035 0.114016 0.660416 0.087533 0.145641 0.146376 0.590572 0.117412 0.171276 0.172832 0.341901 0.313991 0.185528 0.215409 0.417538 0.181525 0.136946 0.135309 0.396508 0.331236 Consensus sequence: BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB --SBCCCCGCCSBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Original Motif Reverse Complement Forward 2 12 0.032858 Species: Mus musculus Original motif 0.358868 0.212371 0.263565 0.165196 0.303014 0.253580 0.111217 0.332189 0.420933 0.110957 0.210958 0.257152 0.769724 0.062662 0.032155 0.135459 0.311973 0.051319 0.408669 0.228039 0.097916 0.141153 0.719697 0.041234 0.009980 0.014044 0.971955 0.004021 0.014425 0.974798 0.008373 0.002404 0.000891 0.013228 0.983966 0.001915 0.000827 0.938560 0.059548 0.001065 0.007071 0.102005 0.872378 0.018546 0.020099 0.897653 0.014151 0.068097 0.114080 0.346724 0.409037 0.130159 0.331439 0.279041 0.085030 0.304491 0.319846 0.136792 0.043641 0.499722 Consensus sequence: VHDADGGCGCGCSHW Reverse complement motif 0.499722 0.136792 0.043641 0.319846 0.304491 0.279041 0.085030 0.331439 0.114080 0.409037 0.346724 0.130159 0.020099 0.014151 0.897653 0.068097 0.007071 0.872378 0.102005 0.018546 0.000827 0.059548 0.938560 0.001065 0.000891 0.983966 0.013228 0.001915 0.014425 0.008373 0.974798 0.002404 0.009980 0.971955 0.014044 0.004021 0.097916 0.719697 0.141153 0.041234 0.311973 0.408669 0.051319 0.228039 0.135459 0.062662 0.032155 0.769724 0.257152 0.110957 0.210958 0.420933 0.332189 0.253580 0.111217 0.303014 0.165196 0.212371 0.263565 0.358868 Consensus sequence: WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB -SBCCCCGCCSBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Original Motif Original Motif Backward 5 12 0.033673 Species: Mus musculus Original motif 0.162979 0.284781 0.237433 0.314807 0.182449 0.447584 0.069464 0.300502 0.298973 0.261014 0.213211 0.226802 0.136039 0.433062 0.144274 0.286625 0.180084 0.395933 0.158565 0.265418 0.069354 0.748510 0.068898 0.113238 0.060485 0.717828 0.075333 0.146354 0.023280 0.071762 0.645500 0.259457 0.166896 0.749762 0.062730 0.020612 0.050401 0.775248 0.089072 0.085279 0.103847 0.767557 0.068804 0.059791 0.064815 0.748318 0.114588 0.072280 0.340921 0.071942 0.242981 0.344157 0.301967 0.263512 0.165927 0.268594 0.479800 0.222955 0.118441 0.178803 0.229469 0.283621 0.143099 0.343811 0.261733 0.180191 0.169905 0.388170 Consensus sequence: BHHBHCCGCCCCDHHHH Reverse complement motif 0.388170 0.180191 0.169905 0.261733 0.343811 0.283621 0.143099 0.229469 0.178803 0.222955 0.118441 0.479800 0.268594 0.263512 0.165927 0.301967 0.344157 0.071942 0.242981 0.340921 0.064815 0.114588 0.748318 0.072280 0.103847 0.068804 0.767557 0.059791 0.050401 0.089072 0.775248 0.085279 0.166896 0.062730 0.749762 0.020612 0.023280 0.645500 0.071762 0.259457 0.060485 0.075333 0.717828 0.146354 0.069354 0.068898 0.748510 0.113238 0.180084 0.158565 0.395933 0.265418 0.136039 0.144274 0.433062 0.286625 0.226802 0.261014 0.213211 0.298973 0.182449 0.069464 0.447584 0.300502 0.314807 0.284781 0.237433 0.162979 Consensus sequence: HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH -SBCCCCGCCSBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_primary Original Motif Reverse Complement Backward 3 12 0.034574 Species: Mus musculus Original motif 0.305970 0.214348 0.269312 0.210370 0.279551 0.218276 0.140576 0.361597 0.391304 0.162239 0.193916 0.252541 0.701667 0.102206 0.041580 0.154547 0.427655 0.068368 0.324706 0.179271 0.144368 0.191048 0.609772 0.054812 0.014295 0.020613 0.958397 0.006695 0.019783 0.962982 0.013403 0.003831 0.001189 0.023882 0.973231 0.001697 0.001343 0.919840 0.077728 0.001089 0.011293 0.097945 0.865194 0.025568 0.039106 0.864604 0.025189 0.071100 0.147663 0.328105 0.407118 0.117115 0.462769 0.203531 0.107986 0.225714 0.293396 0.229650 0.082819 0.394135 Consensus sequence: VHDARGGCGCGCVHH Reverse complement motif 0.394135 0.229650 0.082819 0.293396 0.225714 0.203531 0.107986 0.462769 0.147663 0.407118 0.328105 0.117115 0.039106 0.025189 0.864604 0.071100 0.011293 0.865194 0.097945 0.025568 0.001343 0.077728 0.919840 0.001089 0.001189 0.973231 0.023882 0.001697 0.019783 0.013403 0.962982 0.003831 0.014295 0.958397 0.020613 0.006695 0.144368 0.609772 0.191048 0.054812 0.179271 0.068368 0.324706 0.427655 0.154547 0.102206 0.041580 0.701667 0.252541 0.162239 0.193916 0.391304 0.361597 0.218276 0.140576 0.279551 0.210370 0.214348 0.269312 0.305970 Consensus sequence: HHVGCGCGCCKTDHB Alignment: HHVGCGCGCCKTDHB -SBCCCCGCCSBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondary Reverse Complement Reverse Complement Backward 3 12 0.034747 Species: Mus musculus Original motif 0.114462 0.345602 0.289353 0.250583 0.192593 0.250844 0.116250 0.440313 0.338838 0.304929 0.195843 0.160390 0.312051 0.115094 0.162465 0.410390 0.143975 0.600492 0.123348 0.132185 0.078751 0.715072 0.135182 0.070995 0.146191 0.685571 0.069799 0.098439 0.137287 0.646078 0.126428 0.090207 0.335099 0.092260 0.371510 0.201131 0.033090 0.631176 0.074278 0.261456 0.117516 0.619336 0.100946 0.162202 0.114769 0.627362 0.089839 0.168031 0.195787 0.252057 0.220803 0.331353 0.415355 0.120731 0.281372 0.182542 0.111178 0.217079 0.245769 0.425974 0.191517 0.296952 0.153370 0.358162 Consensus sequence: BHVDCCCCDCCCBDBH Reverse complement motif 0.358162 0.296952 0.153370 0.191517 0.425974 0.217079 0.245769 0.111178 0.182542 0.120731 0.281372 0.415355 0.331353 0.252057 0.220803 0.195787 0.114769 0.089839 0.627362 0.168031 0.117516 0.100946 0.619336 0.162202 0.033090 0.074278 0.631176 0.261456 0.335099 0.371510 0.092260 0.201131 0.137287 0.126428 0.646078 0.090207 0.146191 0.069799 0.685571 0.098439 0.078751 0.135182 0.715072 0.070995 0.143975 0.123348 0.600492 0.132185 0.410390 0.115094 0.162465 0.312051 0.160390 0.304929 0.195843 0.338838 0.440313 0.250844 0.116250 0.192593 0.114462 0.289353 0.345602 0.250583 Consensus sequence: HVDVGGGHGGGGDBHB Alignment: HVDVGGGHGGGGDBHB --BBSGGCGGGGBS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Reverse Complement Reverse Complement Forward 3 12 0.035812 Species: Mus musculus Original motif 0.316572 0.278382 0.152556 0.252490 0.167141 0.257034 0.259894 0.315931 0.175523 0.325956 0.259996 0.238525 0.165052 0.385677 0.239449 0.209822 0.069489 0.782718 0.072454 0.075339 0.049943 0.800636 0.031988 0.117433 0.223382 0.060306 0.552691 0.163621 0.072944 0.818252 0.034406 0.074398 0.070535 0.845127 0.062712 0.021626 0.031035 0.859354 0.055424 0.054187 0.063668 0.798503 0.067274 0.070554 0.348488 0.030697 0.197179 0.423636 0.307220 0.256470 0.181009 0.255301 0.460933 0.285057 0.090258 0.163752 0.315798 0.228431 0.171135 0.284637 0.374527 0.268328 0.198810 0.158335 Consensus sequence: HBBBCCGCCCCWHHHV Reverse complement motif 0.158335 0.268328 0.198810 0.374527 0.284637 0.228431 0.171135 0.315798 0.163752 0.285057 0.090258 0.460933 0.255301 0.256470 0.181009 0.307220 0.423636 0.030697 0.197179 0.348488 0.063668 0.067274 0.798503 0.070554 0.031035 0.055424 0.859354 0.054187 0.070535 0.062712 0.845127 0.021626 0.072944 0.034406 0.818252 0.074398 0.223382 0.552691 0.060306 0.163621 0.049943 0.031988 0.800636 0.117433 0.069489 0.072454 0.782718 0.075339 0.165052 0.239449 0.385677 0.209822 0.175523 0.259996 0.325956 0.238525 0.315931 0.257034 0.259894 0.167141 0.252490 0.278382 0.152556 0.316572 Consensus sequence: BHHHWGGGGCGGBBVH Alignment: BHHHWGGGGCGGBBVH --BBSGGCGGGGBS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Original Motif Forward 9 12 0.036535 Species: Mus musculus Original motif 0.104824 0.412716 0.254506 0.227955 0.644922 0.065476 0.140479 0.149122 0.201205 0.166164 0.347131 0.285501 0.360606 0.256316 0.150766 0.232313 0.199831 0.240681 0.279350 0.280137 0.234308 0.204076 0.321306 0.240310 0.274112 0.462435 0.111425 0.152028 0.067070 0.717501 0.073934 0.141496 0.106745 0.084442 0.658566 0.150247 0.025128 0.967053 0.003585 0.004234 0.006412 0.982989 0.003227 0.007371 0.009588 0.877620 0.002571 0.110221 0.621521 0.355443 0.015669 0.007366 0.002600 0.980275 0.004191 0.012934 0.118773 0.026658 0.783843 0.070725 0.022358 0.822101 0.024684 0.130857 0.713212 0.080912 0.128793 0.077084 0.166568 0.250955 0.107934 0.474544 0.225040 0.222494 0.163301 0.389166 0.268976 0.223206 0.265314 0.242504 0.137052 0.229058 0.148439 0.485451 0.135819 0.304550 0.141994 0.417637 0.272440 0.319501 0.230580 0.177478 Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Reverse complement motif 0.272440 0.230580 0.319501 0.177478 0.417637 0.304550 0.141994 0.135819 0.485451 0.229058 0.148439 0.137052 0.242504 0.223206 0.265314 0.268976 0.389166 0.222494 0.163301 0.225040 0.474544 0.250955 0.107934 0.166568 0.077084 0.080912 0.128793 0.713212 0.022358 0.024684 0.822101 0.130857 0.118773 0.783843 0.026658 0.070725 0.002600 0.004191 0.980275 0.012934 0.007366 0.355443 0.015669 0.621521 0.009588 0.002571 0.877620 0.110221 0.006412 0.003227 0.982989 0.007371 0.025128 0.003585 0.967053 0.004234 0.106745 0.658566 0.084442 0.150247 0.067070 0.073934 0.717501 0.141496 0.274112 0.111425 0.462435 0.152028 0.234308 0.321306 0.204076 0.240310 0.280137 0.240681 0.279350 0.199831 0.232313 0.256316 0.150766 0.360606 0.201205 0.347131 0.166164 0.285501 0.149122 0.065476 0.140479 0.644922 0.104824 0.254506 0.412716 0.227955 Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV --------SBCCCCGCCSBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Reverse Complement Backward 6 12 0.038973 Species: Mus musculus Original motif 0.456612 0.057181 0.078281 0.407926 0.460529 0.185506 0.083106 0.270859 0.445717 0.179510 0.239355 0.135417 0.116339 0.145186 0.275331 0.463144 0.239398 0.142078 0.480004 0.138520 0.355157 0.217877 0.284296 0.142670 0.318602 0.444835 0.153321 0.083243 0.609569 0.055866 0.280349 0.054216 0.062297 0.769824 0.027844 0.140035 0.151868 0.019245 0.803188 0.025699 0.011842 0.952534 0.017959 0.017665 0.017665 0.017959 0.952534 0.011842 0.025699 0.803188 0.019245 0.151868 0.140035 0.027844 0.769824 0.062297 0.054216 0.280349 0.055866 0.609569 0.013084 0.624655 0.177956 0.184305 0.287647 0.183527 0.295753 0.233074 0.042309 0.345931 0.198458 0.413301 0.338138 0.266033 0.045367 0.350462 0.302850 0.155320 0.074662 0.467168 0.240926 0.068901 0.283055 0.407118 0.409954 0.183157 0.154186 0.252704 Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Reverse complement motif 0.252704 0.183157 0.154186 0.409954 0.407118 0.068901 0.283055 0.240926 0.467168 0.155320 0.074662 0.302850 0.350462 0.266033 0.045367 0.338138 0.413301 0.345931 0.198458 0.042309 0.287647 0.295753 0.183527 0.233074 0.013084 0.177956 0.624655 0.184305 0.609569 0.280349 0.055866 0.054216 0.140035 0.769824 0.027844 0.062297 0.025699 0.019245 0.803188 0.151868 0.017665 0.952534 0.017959 0.011842 0.011842 0.017959 0.952534 0.017665 0.151868 0.803188 0.019245 0.025699 0.062297 0.027844 0.769824 0.140035 0.054216 0.055866 0.280349 0.609569 0.318602 0.153321 0.444835 0.083243 0.142670 0.217877 0.284296 0.355157 0.239398 0.480004 0.142078 0.138520 0.463144 0.145186 0.275331 0.116339 0.135417 0.179510 0.239355 0.445717 0.270859 0.185506 0.083106 0.460529 0.407926 0.057181 0.078281 0.456612 Consensus sequence: HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW -----BBSGGCGGGGBS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 25 Motif name: wwCCAmAGTCmt Original motif 0.454545 0.045455 0.227273 0.272727 0.363636 0.136364 0.136364 0.363636 0.000000 1.000000 0.000000 0.000000 0.000000 0.954545 0.045455 0.000000 1.000000 0.000000 0.000000 0.000000 0.409091 0.590909 0.000000 0.000000 0.909091 0.045455 0.045455 0.000000 0.000000 0.000000 1.000000 0.000000 0.045455 0.000000 0.000000 0.954545 0.045455 0.909091 0.000000 0.045455 0.272727 0.318182 0.181818 0.227273 0.181818 0.227273 0.227273 0.363636 Consensus sequence: DDCCAMAGTCHB Reserve complement motif 0.363636 0.227273 0.227273 0.181818 0.272727 0.181818 0.318182 0.227273 0.045455 0.000000 0.909091 0.045455 0.954545 0.000000 0.000000 0.045455 0.000000 1.000000 0.000000 0.000000 0.000000 0.045455 0.045455 0.909091 0.409091 0.000000 0.590909 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.045455 0.954545 0.000000 0.000000 0.000000 1.000000 0.000000 0.363636 0.136364 0.136364 0.363636 0.272727 0.045455 0.227273 0.454545 Consensus sequence: VDGACTRTGGDD ************************************************************************ Best Matches for Motif ID 25 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Original Motif Original Motif Backward 5 12 0.009273 Species: Mus musculus Original motif 0.212524 0.177958 0.293723 0.315796 0.420838 0.283140 0.144938 0.151084 0.198119 0.196347 0.260353 0.345181 0.117752 0.282184 0.137207 0.462857 0.070125 0.781439 0.138093 0.010344 0.965989 0.000956 0.023828 0.009227 0.977263 0.003066 0.019255 0.000416 0.007404 0.000267 0.938934 0.053395 0.007147 0.000287 0.983377 0.009190 0.039608 0.000730 0.040682 0.918981 0.000685 0.905345 0.021930 0.072040 0.800961 0.001126 0.195791 0.002121 0.245039 0.241263 0.038084 0.475614 0.265397 0.238316 0.304963 0.191325 0.203742 0.286208 0.231002 0.279048 0.194132 0.188854 0.346693 0.270322 0.310711 0.263840 0.184317 0.241132 Consensus sequence: DHDBCAAGGTCAHVBDH Reverse complement motif 0.241132 0.263840 0.184317 0.310711 0.194132 0.346693 0.188854 0.270322 0.203742 0.231002 0.286208 0.279048 0.265397 0.304963 0.238316 0.191325 0.475614 0.241263 0.038084 0.245039 0.002121 0.001126 0.195791 0.800961 0.000685 0.021930 0.905345 0.072040 0.918981 0.000730 0.040682 0.039608 0.007147 0.983377 0.000287 0.009190 0.007404 0.938934 0.000267 0.053395 0.000416 0.003066 0.019255 0.977263 0.009227 0.000956 0.023828 0.965989 0.070125 0.138093 0.781439 0.010344 0.462857 0.282184 0.137207 0.117752 0.345181 0.196347 0.260353 0.198119 0.151084 0.283140 0.144938 0.420838 0.315796 0.177958 0.293723 0.212524 Consensus sequence: HHBVHTGACCTTGVDHD Alignment: DHDBCAAGGTCAHVBDH -DDCCAMAGTCHB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_secondary Original Motif Original Motif Forward 1 12 0.015755 Species: Mus musculus Original motif 0.131680 0.169949 0.346277 0.352094 0.109910 0.144258 0.373681 0.372151 0.196671 0.411335 0.159689 0.232305 0.311086 0.307077 0.122332 0.259505 0.895155 0.013238 0.038874 0.052733 0.779629 0.018399 0.171269 0.030703 0.950546 0.002649 0.041825 0.004980 0.004769 0.002646 0.985847 0.006739 0.004458 0.002117 0.012011 0.981414 0.016789 0.969626 0.003890 0.009695 0.002468 0.982852 0.004754 0.009926 0.891448 0.003193 0.097548 0.007811 0.513330 0.308971 0.070467 0.107232 0.179371 0.115514 0.130898 0.574217 0.285826 0.277536 0.166982 0.269655 0.319407 0.227783 0.129020 0.323790 Consensus sequence: BBHHAAAGTCCAMTHH Reverse complement motif 0.323790 0.227783 0.129020 0.319407 0.269655 0.277536 0.166982 0.285826 0.574217 0.115514 0.130898 0.179371 0.107232 0.308971 0.070467 0.513330 0.007811 0.003193 0.097548 0.891448 0.002468 0.004754 0.982852 0.009926 0.016789 0.003890 0.969626 0.009695 0.981414 0.002117 0.012011 0.004458 0.004769 0.985847 0.002646 0.006739 0.004980 0.002649 0.041825 0.950546 0.030703 0.018399 0.171269 0.779629 0.052733 0.013238 0.038874 0.895155 0.259505 0.307077 0.122332 0.311086 0.196671 0.159689 0.411335 0.232305 0.109910 0.373681 0.144258 0.372151 0.352094 0.169949 0.346277 0.131680 Consensus sequence: HHAYTGGACTTTHDBV Alignment: BBHHAAAGTCCAMTHH DDCCAMAGTCHB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00023 Sox30_primary Reverse Complement Original Motif Forward 3 12 0.021894 Species: Mus musculus Original motif 0.372432 0.102933 0.322145 0.202491 0.328072 0.182071 0.157347 0.332510 0.289417 0.084511 0.292873 0.333198 0.157571 0.227851 0.441662 0.172917 0.716832 0.049010 0.201411 0.032747 0.957368 0.003162 0.004402 0.035068 0.003907 0.862678 0.009407 0.124008 0.977231 0.007658 0.004263 0.010847 0.976481 0.004510 0.015225 0.003784 0.067568 0.004353 0.005071 0.923008 0.158205 0.108442 0.467023 0.266330 0.334549 0.091557 0.510241 0.063654 0.456431 0.182602 0.150234 0.210732 0.387485 0.241062 0.151504 0.219950 0.188387 0.269857 0.176514 0.365242 0.175680 0.243984 0.165833 0.414502 Consensus sequence: DHDBAACAATDRHHHH Reverse complement motif 0.414502 0.243984 0.165833 0.175680 0.365242 0.269857 0.176514 0.188387 0.219950 0.241062 0.151504 0.387485 0.210732 0.182602 0.150234 0.456431 0.334549 0.510241 0.091557 0.063654 0.158205 0.467023 0.108442 0.266330 0.923008 0.004353 0.005071 0.067568 0.003784 0.004510 0.015225 0.976481 0.010847 0.007658 0.004263 0.977231 0.003907 0.009407 0.862678 0.124008 0.035068 0.003162 0.004402 0.957368 0.032747 0.049010 0.201411 0.716832 0.157571 0.441662 0.227851 0.172917 0.333198 0.084511 0.292873 0.289417 0.332510 0.182071 0.157347 0.328072 0.202491 0.102933 0.322145 0.372432 Consensus sequence: HHHHMHATTGTTBDHD Alignment: DHDBAACAATDRHHHH --VDGACTRTGGDD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00028 Tcfap2e_primary Original Motif Reverse Complement Backward 2 12 0.023236 Species: Mus musculus Original motif 0.369517 0.172742 0.163174 0.294567 0.260541 0.211816 0.194359 0.333284 0.292862 0.281323 0.073013 0.352801 0.011777 0.272676 0.697188 0.018359 0.005160 0.983588 0.005917 0.005335 0.002256 0.960488 0.005733 0.031524 0.003735 0.283214 0.123762 0.589290 0.024383 0.379981 0.542999 0.052638 0.589290 0.123762 0.283214 0.003735 0.031524 0.005733 0.960488 0.002256 0.005335 0.005917 0.983588 0.005160 0.018359 0.697188 0.272676 0.011777 0.328286 0.093173 0.334133 0.244408 0.563777 0.145250 0.140240 0.150733 0.263206 0.222321 0.242153 0.272320 Consensus sequence: HHHGCCTSAGGCDAD Reverse complement motif 0.272320 0.222321 0.242153 0.263206 0.150733 0.145250 0.140240 0.563777 0.328286 0.334133 0.093173 0.244408 0.018359 0.272676 0.697188 0.011777 0.005335 0.983588 0.005917 0.005160 0.031524 0.960488 0.005733 0.002256 0.003735 0.123762 0.283214 0.589290 0.024383 0.542999 0.379981 0.052638 0.589290 0.283214 0.123762 0.003735 0.002256 0.005733 0.960488 0.031524 0.005160 0.005917 0.983588 0.005335 0.011777 0.697188 0.272676 0.018359 0.352801 0.281323 0.073013 0.292862 0.333284 0.211816 0.194359 0.260541 0.294567 0.172742 0.163174 0.369517 Consensus sequence: DTHGCCTSAGGCHHH Alignment: DTHGCCTSAGGCHHH --DDCCAMAGTCHB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Original Motif Backward 6 12 0.023587 Species: Mus musculus Original motif 0.360997 0.300272 0.115555 0.223177 0.309749 0.228429 0.166233 0.295589 0.149419 0.176868 0.240155 0.433558 0.379704 0.095791 0.276373 0.248133 0.394549 0.174184 0.130641 0.300626 0.443749 0.070776 0.211081 0.274393 0.364301 0.074356 0.370406 0.190936 0.791976 0.038475 0.093390 0.076159 0.963721 0.001826 0.002456 0.031997 0.004516 0.954596 0.008092 0.032796 0.981080 0.002062 0.002161 0.014697 0.986185 0.001846 0.006976 0.004992 0.059567 0.003649 0.002189 0.934595 0.495328 0.024257 0.240450 0.239965 0.305027 0.094878 0.526069 0.074025 0.418442 0.196237 0.158323 0.226998 0.336713 0.220452 0.191155 0.251680 0.192296 0.300342 0.169047 0.338315 0.240387 0.144634 0.128513 0.486465 0.290763 0.271259 0.116600 0.321377 0.224825 0.296233 0.229255 0.249687 0.493240 0.171285 0.075148 0.260326 Consensus sequence: HHBDHDDAACAATDRHHHHHBW Reverse complement motif 0.260326 0.171285 0.075148 0.493240 0.224825 0.229255 0.296233 0.249687 0.321377 0.271259 0.116600 0.290763 0.486465 0.144634 0.128513 0.240387 0.338315 0.300342 0.169047 0.192296 0.251680 0.220452 0.191155 0.336713 0.226998 0.196237 0.158323 0.418442 0.305027 0.526069 0.094878 0.074025 0.239965 0.024257 0.240450 0.495328 0.934595 0.003649 0.002189 0.059567 0.004992 0.001846 0.006976 0.986185 0.014697 0.002062 0.002161 0.981080 0.004516 0.008092 0.954596 0.032796 0.031997 0.001826 0.002456 0.963721 0.076159 0.038475 0.093390 0.791976 0.364301 0.370406 0.074356 0.190936 0.274393 0.070776 0.211081 0.443749 0.300626 0.174184 0.130641 0.394549 0.248133 0.095791 0.276373 0.379704 0.433558 0.176868 0.240155 0.149419 0.295589 0.228429 0.166233 0.309749 0.223177 0.300272 0.115555 0.360997 Consensus sequence: WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW -----VDGACTRTGGDD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00095 Zfp691_secondary Original Motif Reverse Complement Backward 4 12 0.024090 Species: Mus musculus Original motif 0.236868 0.155338 0.295091 0.312703 0.522782 0.133021 0.177386 0.166812 0.192915 0.374870 0.221406 0.210809 0.146546 0.199196 0.418035 0.236223 0.454326 0.095049 0.151770 0.298855 0.027956 0.023096 0.878335 0.070614 0.916030 0.020358 0.039894 0.023717 0.010595 0.938036 0.039415 0.011954 0.007271 0.014948 0.007990 0.969792 0.014291 0.964878 0.011126 0.009705 0.154586 0.759294 0.050151 0.035969 0.051021 0.268239 0.053410 0.627330 0.158293 0.386843 0.113152 0.341713 0.281766 0.184139 0.187916 0.346179 0.292444 0.267259 0.241323 0.198974 0.425732 0.262331 0.149076 0.162861 0.205385 0.384164 0.267912 0.142538 Consensus sequence: DABBWGACTCCTHDVHV Reverse complement motif 0.205385 0.267912 0.384164 0.142538 0.162861 0.262331 0.149076 0.425732 0.198974 0.267259 0.241323 0.292444 0.346179 0.184139 0.187916 0.281766 0.158293 0.113152 0.386843 0.341713 0.627330 0.268239 0.053410 0.051021 0.154586 0.050151 0.759294 0.035969 0.014291 0.011126 0.964878 0.009705 0.969792 0.014948 0.007990 0.007271 0.010595 0.039415 0.938036 0.011954 0.023717 0.020358 0.039894 0.916030 0.027956 0.878335 0.023096 0.070614 0.298855 0.095049 0.151770 0.454326 0.146546 0.418035 0.199196 0.236223 0.192915 0.221406 0.374870 0.210809 0.166812 0.133021 0.177386 0.522782 0.312703 0.155338 0.295091 0.236868 Consensus sequence: VHBDDAGGAGTCWBBTD Alignment: VHBDDAGGAGTCWBBTD --DDCCAMAGTCHB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00004 Sox14_secondary Reverse Complement Original Motif Backward 2 12 0.025783 Species: Mus musculus Original motif 0.191264 0.345487 0.212142 0.251106 0.105033 0.130838 0.338939 0.425191 0.126539 0.333031 0.233364 0.307066 0.641901 0.114039 0.195933 0.048127 0.153349 0.532437 0.272427 0.041786 0.934680 0.009395 0.019668 0.036257 0.013611 0.927298 0.037729 0.021361 0.964293 0.018416 0.006724 0.010568 0.962181 0.018004 0.014592 0.005223 0.229593 0.016301 0.007632 0.746474 0.268456 0.030092 0.519349 0.182102 0.201484 0.107350 0.588833 0.102334 0.253726 0.259057 0.242924 0.244293 0.168663 0.203061 0.347898 0.280378 0.175853 0.339716 0.301724 0.182707 Consensus sequence: BKBASACAATRGHBB Reverse complement motif 0.175853 0.301724 0.339716 0.182707 0.168663 0.347898 0.203061 0.280378 0.253726 0.242924 0.259057 0.244293 0.201484 0.588833 0.107350 0.102334 0.268456 0.519349 0.030092 0.182102 0.746474 0.016301 0.007632 0.229593 0.005223 0.018004 0.014592 0.962181 0.010568 0.018416 0.006724 0.964293 0.013611 0.037729 0.927298 0.021361 0.036257 0.009395 0.019668 0.934680 0.153349 0.272427 0.532437 0.041786 0.048127 0.114039 0.195933 0.641901 0.126539 0.233364 0.333031 0.307066 0.425191 0.130838 0.338939 0.105033 0.191264 0.212142 0.345487 0.251106 Consensus sequence: BBDCMATTGTSTBRB Alignment: BKBASACAATRGHBB --VDGACTRTGGDD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00081 Mybl1_primary Reverse Complement Original Motif Backward 3 12 0.026472 Species: Mus musculus Original motif 0.219490 0.243488 0.196239 0.340783 0.242096 0.094435 0.234242 0.429226 0.242319 0.155536 0.366023 0.236122 0.369837 0.185801 0.219486 0.224876 0.390568 0.211210 0.098244 0.299978 0.782192 0.011783 0.158354 0.047671 0.837985 0.006254 0.084522 0.071239 0.027255 0.965067 0.001360 0.006318 0.006706 0.831051 0.151462 0.010782 0.003491 0.002829 0.991758 0.001921 0.004195 0.009136 0.009776 0.976893 0.009860 0.166761 0.002159 0.821220 0.709623 0.006957 0.204415 0.079005 0.316262 0.239384 0.140024 0.304330 0.254660 0.237146 0.090326 0.417868 0.289939 0.309708 0.068038 0.332316 0.262670 0.214791 0.217375 0.305164 Consensus sequence: HDDDHAACCGTTAHHHD Reverse complement motif 0.305164 0.214791 0.217375 0.262670 0.332316 0.309708 0.068038 0.289939 0.417868 0.237146 0.090326 0.254660 0.304330 0.239384 0.140024 0.316262 0.079005 0.006957 0.204415 0.709623 0.821220 0.166761 0.002159 0.009860 0.976893 0.009136 0.009776 0.004195 0.003491 0.991758 0.002829 0.001921 0.006706 0.151462 0.831051 0.010782 0.027255 0.001360 0.965067 0.006318 0.071239 0.006254 0.084522 0.837985 0.047671 0.011783 0.158354 0.782192 0.299978 0.211210 0.098244 0.390568 0.224876 0.185801 0.219486 0.369837 0.242319 0.366023 0.155536 0.236122 0.429226 0.094435 0.234242 0.242096 0.340783 0.243488 0.196239 0.219490 Consensus sequence: DHHHTAACGGTTHDHDH Alignment: HDDDHAACCGTTAHHHD ---VDGACTRTGGDD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00052 Osr2_primary Original Motif Reverse Complement Backward 2 12 0.027027 Species: Mus musculus Original motif 0.295210 0.230759 0.178832 0.295199 0.286163 0.186772 0.186150 0.340915 0.287577 0.235045 0.329453 0.147924 0.263264 0.191325 0.081978 0.463433 0.839420 0.118123 0.018788 0.023669 0.005488 0.984397 0.000830 0.009284 0.660134 0.001532 0.336574 0.001760 0.003020 0.001773 0.993144 0.002063 0.039664 0.001060 0.005054 0.954222 0.980339 0.000636 0.016776 0.002249 0.003849 0.001418 0.992166 0.002568 0.000858 0.950172 0.007228 0.041743 0.342840 0.230712 0.133570 0.292878 0.342486 0.316980 0.167294 0.173240 0.362426 0.178913 0.146709 0.311952 0.266586 0.140406 0.435643 0.157365 Consensus sequence: HHVHACRGTAGCHHHD Reverse complement motif 0.266586 0.435643 0.140406 0.157365 0.311952 0.178913 0.146709 0.362426 0.173240 0.316980 0.167294 0.342486 0.292878 0.230712 0.133570 0.342840 0.000858 0.007228 0.950172 0.041743 0.003849 0.992166 0.001418 0.002568 0.002249 0.000636 0.016776 0.980339 0.954222 0.001060 0.005054 0.039664 0.003020 0.993144 0.001773 0.002063 0.001760 0.001532 0.336574 0.660134 0.005488 0.000830 0.984397 0.009284 0.023669 0.118123 0.018788 0.839420 0.463433 0.191325 0.081978 0.263264 0.287577 0.329453 0.235045 0.147924 0.340915 0.186772 0.186150 0.286163 0.295199 0.230759 0.178832 0.295210 Consensus sequence: HHHHGCTACKGTHVHH Alignment: HHHHGCTACKGTHVHH ---DDCCAMAGTCHB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Reverse Complement Reverse Complement Forward 3 12 0.027066 Species: Mus musculus Original motif 0.282316 0.413385 0.114930 0.189369 0.341654 0.135011 0.267943 0.255392 0.399523 0.173081 0.168845 0.258551 0.365086 0.196360 0.211856 0.226699 0.243321 0.177839 0.224206 0.354635 0.029873 0.808479 0.036309 0.125339 0.004945 0.815465 0.040635 0.138955 0.934557 0.058944 0.005027 0.001471 0.005099 0.003998 0.986148 0.004755 0.969304 0.020594 0.001929 0.008173 0.008189 0.984816 0.004199 0.002795 0.669579 0.012182 0.282153 0.036085 0.130511 0.171241 0.334041 0.364207 0.198982 0.289660 0.252392 0.258966 0.423172 0.190978 0.164411 0.221440 0.213519 0.287388 0.294414 0.204679 0.371956 0.285061 0.150191 0.192792 Consensus sequence: HDHDDCCAGACABBHVH Reverse complement motif 0.192792 0.285061 0.150191 0.371956 0.213519 0.294414 0.287388 0.204679 0.221440 0.190978 0.164411 0.423172 0.198982 0.252392 0.289660 0.258966 0.364207 0.171241 0.334041 0.130511 0.036085 0.012182 0.282153 0.669579 0.008189 0.004199 0.984816 0.002795 0.008173 0.020594 0.001929 0.969304 0.005099 0.986148 0.003998 0.004755 0.001471 0.058944 0.005027 0.934557 0.004945 0.040635 0.815465 0.138955 0.029873 0.036309 0.808479 0.125339 0.354635 0.177839 0.224206 0.243321 0.226699 0.196360 0.211856 0.365086 0.258551 0.173081 0.168845 0.399523 0.255392 0.135011 0.267943 0.341654 0.282316 0.114930 0.413385 0.189369 Consensus sequence: HVHBVTGTCTGGDDHDD Alignment: HVHBVTGTCTGGDDHDD --VDGACTRTGGDD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 28 Motif name: ssGCkTGCssk Original motif 0.000000 0.500000 0.500000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.500000 0.500000 Consensus sequence: SSGCKTGCSSK Reserve complement motif 0.000000 0.500000 0.000000 0.500000 0.000000 0.500000 0.500000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.500000 0.500000 0.000000 Consensus sequence: YSSGCAYGCSS ************************************************************************ Best Matches for Motif ID 28 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Original Motif Original Motif Backward 1 11 0.004633 Species: Mus musculus Original motif 0.358868 0.212371 0.263565 0.165196 0.303014 0.253580 0.111217 0.332189 0.420933 0.110957 0.210958 0.257152 0.769724 0.062662 0.032155 0.135459 0.311973 0.051319 0.408669 0.228039 0.097916 0.141153 0.719697 0.041234 0.009980 0.014044 0.971955 0.004021 0.014425 0.974798 0.008373 0.002404 0.000891 0.013228 0.983966 0.001915 0.000827 0.938560 0.059548 0.001065 0.007071 0.102005 0.872378 0.018546 0.020099 0.897653 0.014151 0.068097 0.114080 0.346724 0.409037 0.130159 0.331439 0.279041 0.085030 0.304491 0.319846 0.136792 0.043641 0.499722 Consensus sequence: VHDADGGCGCGCSHW Reverse complement motif 0.499722 0.136792 0.043641 0.319846 0.304491 0.279041 0.085030 0.331439 0.114080 0.409037 0.346724 0.130159 0.020099 0.014151 0.897653 0.068097 0.007071 0.872378 0.102005 0.018546 0.000827 0.059548 0.938560 0.001065 0.000891 0.983966 0.013228 0.001915 0.014425 0.008373 0.974798 0.002404 0.009980 0.971955 0.014044 0.004021 0.097916 0.719697 0.141153 0.041234 0.311973 0.408669 0.051319 0.228039 0.135459 0.062662 0.032155 0.769724 0.257152 0.110957 0.210958 0.420933 0.332189 0.253580 0.111217 0.303014 0.165196 0.212371 0.263565 0.358868 Consensus sequence: WHSGCGCGCCHTDHB Alignment: VHDADGGCGCGCSHW ----SSGCKTGCSSK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00094 Zfp128_primary Original Motif Original Motif Backward 3 11 0.004821 Species: Mus musculus Original motif 0.194238 0.221898 0.264007 0.319857 0.288200 0.308426 0.101010 0.302365 0.285270 0.161574 0.132609 0.420548 0.252760 0.126943 0.276148 0.344149 0.220972 0.026248 0.366825 0.385955 0.016419 0.006845 0.879910 0.096825 0.185479 0.004691 0.730552 0.079278 0.003651 0.988022 0.001666 0.006661 0.067428 0.001276 0.928472 0.002824 0.004284 0.002407 0.001922 0.991387 0.990094 0.001414 0.004941 0.003550 0.005452 0.989161 0.001844 0.003543 0.149564 0.620887 0.192873 0.036677 0.100768 0.559974 0.113427 0.225831 0.177258 0.260019 0.181462 0.381261 0.425243 0.223937 0.143942 0.206878 0.451743 0.122626 0.218322 0.207309 Consensus sequence: BHHDKGGCGTACCCBHD Reverse complement motif 0.207309 0.122626 0.218322 0.451743 0.206878 0.223937 0.143942 0.425243 0.381261 0.260019 0.181462 0.177258 0.100768 0.113427 0.559974 0.225831 0.149564 0.192873 0.620887 0.036677 0.005452 0.001844 0.989161 0.003543 0.003550 0.001414 0.004941 0.990094 0.991387 0.002407 0.001922 0.004284 0.067428 0.928472 0.001276 0.002824 0.003651 0.001666 0.988022 0.006661 0.185479 0.730552 0.004691 0.079278 0.016419 0.879910 0.006845 0.096825 0.385955 0.026248 0.366825 0.220972 0.344149 0.126943 0.276148 0.252760 0.420548 0.161574 0.132609 0.285270 0.288200 0.101010 0.308426 0.302365 0.319857 0.221898 0.264007 0.194238 Consensus sequence: DHVGGGTACGCCRDHDV Alignment: BHHDKGGCGTACCCBHD ----SSGCKTGCSSK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_secondary Reverse Complement Reverse Complement Forward 6 11 0.005628 Species: Mus musculus Original motif 0.204898 0.149951 0.363373 0.281778 0.112946 0.243700 0.437938 0.205417 0.205232 0.182319 0.383143 0.229305 0.242063 0.152491 0.296426 0.309020 0.312922 0.028523 0.585026 0.073529 0.006754 0.011178 0.005346 0.976723 0.127589 0.005562 0.859436 0.007414 0.010046 0.974694 0.007001 0.008259 0.010262 0.974769 0.006069 0.008899 0.015122 0.966101 0.007970 0.010807 0.556511 0.167389 0.114635 0.161465 0.586459 0.044786 0.073450 0.295305 0.297710 0.194666 0.223655 0.283969 0.303202 0.250809 0.206475 0.239514 0.279338 0.160655 0.314457 0.245550 0.266477 0.266890 0.299970 0.166662 Consensus sequence: DBDDRTGCCCAWDHDV Reverse complement motif 0.266477 0.299970 0.266890 0.166662 0.279338 0.314457 0.160655 0.245550 0.239514 0.250809 0.206475 0.303202 0.283969 0.194666 0.223655 0.297710 0.295305 0.044786 0.073450 0.586459 0.161465 0.167389 0.114635 0.556511 0.015122 0.007970 0.966101 0.010807 0.010262 0.006069 0.974769 0.008899 0.010046 0.007001 0.974694 0.008259 0.127589 0.859436 0.005562 0.007414 0.976723 0.011178 0.005346 0.006754 0.312922 0.585026 0.028523 0.073529 0.309020 0.152491 0.296426 0.242063 0.205232 0.383143 0.182319 0.229305 0.112946 0.437938 0.243700 0.205417 0.204898 0.363373 0.149951 0.281778 Consensus sequence: VHHDWTGGGCAMDHBH Alignment: VHHDWTGGGCAMDHBH -----YSSGCAYGCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Original Motif Original Motif Forward 3 11 0.005960 Species: Mus musculus Original motif 0.142624 0.111294 0.283688 0.462394 0.221170 0.081404 0.499138 0.198288 0.290070 0.042114 0.604904 0.062912 0.109755 0.559510 0.215454 0.115281 0.111745 0.022727 0.850580 0.014948 0.015907 0.942291 0.005561 0.036241 0.088509 0.003729 0.902805 0.004957 0.004957 0.902805 0.003729 0.088509 0.036241 0.005561 0.942291 0.015907 0.014948 0.850580 0.022727 0.111745 0.325358 0.049424 0.519652 0.105566 0.062912 0.604904 0.042114 0.290070 0.214335 0.388248 0.125912 0.271505 0.128984 0.372787 0.092390 0.405839 0.269058 0.098422 0.484016 0.148504 0.362176 0.156050 0.188642 0.293132 Consensus sequence: DDGCGCGCGCRCHYRD Reverse complement motif 0.293132 0.156050 0.188642 0.362176 0.269058 0.484016 0.098422 0.148504 0.405839 0.372787 0.092390 0.128984 0.214335 0.125912 0.388248 0.271505 0.062912 0.042114 0.604904 0.290070 0.325358 0.519652 0.049424 0.105566 0.014948 0.022727 0.850580 0.111745 0.036241 0.942291 0.005561 0.015907 0.004957 0.003729 0.902805 0.088509 0.088509 0.902805 0.003729 0.004957 0.015907 0.005561 0.942291 0.036241 0.111745 0.850580 0.022727 0.014948 0.109755 0.215454 0.559510 0.115281 0.290070 0.604904 0.042114 0.062912 0.221170 0.499138 0.081404 0.198288 0.462394 0.111294 0.283688 0.142624 Consensus sequence: DMMDGMGCGCGCGCHD Alignment: DDGCGCGCGCRCHYRD --SSGCKTGCSSK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_primary Original Motif Reverse Complement Forward 2 11 0.008217 Species: Mus musculus Original motif 0.305970 0.214348 0.269312 0.210370 0.279551 0.218276 0.140576 0.361597 0.391304 0.162239 0.193916 0.252541 0.701667 0.102206 0.041580 0.154547 0.427655 0.068368 0.324706 0.179271 0.144368 0.191048 0.609772 0.054812 0.014295 0.020613 0.958397 0.006695 0.019783 0.962982 0.013403 0.003831 0.001189 0.023882 0.973231 0.001697 0.001343 0.919840 0.077728 0.001089 0.011293 0.097945 0.865194 0.025568 0.039106 0.864604 0.025189 0.071100 0.147663 0.328105 0.407118 0.117115 0.462769 0.203531 0.107986 0.225714 0.293396 0.229650 0.082819 0.394135 Consensus sequence: VHDARGGCGCGCVHH Reverse complement motif 0.394135 0.229650 0.082819 0.293396 0.225714 0.203531 0.107986 0.462769 0.147663 0.407118 0.328105 0.117115 0.039106 0.025189 0.864604 0.071100 0.011293 0.865194 0.097945 0.025568 0.001343 0.077728 0.919840 0.001089 0.001189 0.973231 0.023882 0.001697 0.019783 0.013403 0.962982 0.003831 0.014295 0.958397 0.020613 0.006695 0.144368 0.609772 0.191048 0.054812 0.179271 0.068368 0.324706 0.427655 0.154547 0.102206 0.041580 0.701667 0.252541 0.162239 0.193916 0.391304 0.361597 0.218276 0.140576 0.279551 0.210370 0.214348 0.269312 0.305970 Consensus sequence: HHVGCGCGCCKTDHB Alignment: HHVGCGCGCCKTDHB -SSGCKTGCSSK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Reverse Complement Original Motif Forward 1 11 0.010926 Species: Mus musculus Original motif 0.127991 0.202889 0.399822 0.269298 0.156940 0.244015 0.182364 0.416681 0.046494 0.050598 0.744311 0.158596 0.196142 0.365183 0.183389 0.255286 0.019306 0.946805 0.015210 0.018680 0.924839 0.022113 0.027620 0.025428 0.007478 0.672138 0.027789 0.292595 0.046702 0.026044 0.906146 0.021107 0.117335 0.610863 0.025132 0.246670 0.044431 0.053581 0.722748 0.179240 0.543713 0.149809 0.190030 0.116447 0.241148 0.722386 0.022547 0.013919 0.265412 0.113032 0.270602 0.350954 0.226186 0.143504 0.332746 0.297564 Consensus sequence: BBGHCACGCGACDD Reverse complement motif 0.226186 0.332746 0.143504 0.297564 0.350954 0.113032 0.270602 0.265412 0.241148 0.022547 0.722386 0.013919 0.116447 0.149809 0.190030 0.543713 0.044431 0.722748 0.053581 0.179240 0.117335 0.025132 0.610863 0.246670 0.046702 0.906146 0.026044 0.021107 0.007478 0.027789 0.672138 0.292595 0.025428 0.022113 0.027620 0.924839 0.019306 0.015210 0.946805 0.018680 0.196142 0.183389 0.365183 0.255286 0.046494 0.744311 0.050598 0.158596 0.416681 0.244015 0.182364 0.156940 0.127991 0.399822 0.202889 0.269298 Consensus sequence: HDGTCGCGTGDCVB Alignment: HDGTCGCGTGDCVB YSSGCAYGCSS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Reverse Complement Original Motif Forward 4 11 0.015020 Species: Mus musculus Original motif 0.298336 0.418632 0.208054 0.074978 0.289907 0.015608 0.457100 0.237385 0.273583 0.077889 0.107860 0.540668 0.184954 0.161611 0.384390 0.269045 0.521826 0.156340 0.089019 0.232815 0.356716 0.131104 0.394857 0.117323 0.266669 0.108765 0.505273 0.119293 0.020778 0.047199 0.919524 0.012500 0.948536 0.018775 0.008113 0.024576 0.010822 0.964042 0.014701 0.010434 0.007428 0.019505 0.966351 0.006717 0.010025 0.975678 0.008648 0.005649 0.043796 0.120935 0.742979 0.092289 0.008252 0.250704 0.541132 0.199913 0.474428 0.044681 0.134430 0.346461 0.146597 0.421317 0.143166 0.288920 0.020540 0.181479 0.553811 0.244170 0.129612 0.173360 0.535219 0.161808 0.506084 0.158156 0.130983 0.204776 0.054872 0.103043 0.545792 0.296293 0.389882 0.171037 0.164162 0.274918 0.225861 0.314031 0.288872 0.171237 Consensus sequence: VDWDARRGACGCGGWHGGAKHV Reverse complement motif 0.225861 0.288872 0.314031 0.171237 0.274918 0.171037 0.164162 0.389882 0.054872 0.545792 0.103043 0.296293 0.204776 0.158156 0.130983 0.506084 0.129612 0.535219 0.173360 0.161808 0.020540 0.553811 0.181479 0.244170 0.146597 0.143166 0.421317 0.288920 0.346461 0.044681 0.134430 0.474428 0.008252 0.541132 0.250704 0.199913 0.043796 0.742979 0.120935 0.092289 0.010025 0.008648 0.975678 0.005649 0.007428 0.966351 0.019505 0.006717 0.010822 0.014701 0.964042 0.010434 0.024576 0.018775 0.008113 0.948536 0.020778 0.919524 0.047199 0.012500 0.266669 0.505273 0.108765 0.119293 0.356716 0.394857 0.131104 0.117323 0.232815 0.156340 0.089019 0.521826 0.184954 0.384390 0.161611 0.269045 0.540668 0.077889 0.107860 0.273583 0.289907 0.457100 0.015608 0.237385 0.298336 0.208054 0.418632 0.074978 Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV ---YSSGCAYGCSS-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Reverse Complement Reverse Complement Forward 2 11 0.016078 Species: Mus musculus Original motif 0.146334 0.312326 0.244281 0.297060 0.493155 0.092609 0.162506 0.251729 0.503593 0.059863 0.077561 0.358984 0.763321 0.015264 0.213114 0.008301 0.012415 0.025932 0.945502 0.016151 0.006713 0.015221 0.950098 0.027968 0.062415 0.834303 0.054500 0.048782 0.011010 0.020677 0.928821 0.039493 0.012785 0.024162 0.145822 0.817231 0.133595 0.033962 0.787876 0.044567 0.140697 0.180481 0.428253 0.250570 0.036281 0.806412 0.033510 0.123797 0.157910 0.408607 0.122427 0.311055 0.292185 0.260017 0.197515 0.250283 0.251107 0.124480 0.359447 0.264967 Consensus sequence: BDWAGGCGTGBCHHD Reverse complement motif 0.251107 0.359447 0.124480 0.264967 0.250283 0.260017 0.197515 0.292185 0.157910 0.122427 0.408607 0.311055 0.036281 0.033510 0.806412 0.123797 0.140697 0.428253 0.180481 0.250570 0.133595 0.787876 0.033962 0.044567 0.817231 0.024162 0.145822 0.012785 0.011010 0.928821 0.020677 0.039493 0.062415 0.054500 0.834303 0.048782 0.006713 0.950098 0.015221 0.027968 0.012415 0.945502 0.025932 0.016151 0.008301 0.015264 0.213114 0.763321 0.358984 0.059863 0.077561 0.503593 0.251729 0.092609 0.162506 0.493155 0.146334 0.244281 0.312326 0.297060 Consensus sequence: HHDGBCACGCCTWDB Alignment: HHDGBCACGCCTWDB -YSSGCAYGCSS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Original Motif Reverse Complement Backward 3 11 0.017160 Species: Mus musculus Original motif 0.456612 0.057181 0.078281 0.407926 0.460529 0.185506 0.083106 0.270859 0.445717 0.179510 0.239355 0.135417 0.116339 0.145186 0.275331 0.463144 0.239398 0.142078 0.480004 0.138520 0.355157 0.217877 0.284296 0.142670 0.318602 0.444835 0.153321 0.083243 0.609569 0.055866 0.280349 0.054216 0.062297 0.769824 0.027844 0.140035 0.151868 0.019245 0.803188 0.025699 0.011842 0.952534 0.017959 0.017665 0.017665 0.017959 0.952534 0.011842 0.025699 0.803188 0.019245 0.151868 0.140035 0.027844 0.769824 0.062297 0.054216 0.280349 0.055866 0.609569 0.013084 0.624655 0.177956 0.184305 0.287647 0.183527 0.295753 0.233074 0.042309 0.345931 0.198458 0.413301 0.338138 0.266033 0.045367 0.350462 0.302850 0.155320 0.074662 0.467168 0.240926 0.068901 0.283055 0.407118 0.409954 0.183157 0.154186 0.252704 Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Reverse complement motif 0.252704 0.183157 0.154186 0.409954 0.407118 0.068901 0.283055 0.240926 0.467168 0.155320 0.074662 0.302850 0.350462 0.266033 0.045367 0.338138 0.413301 0.345931 0.198458 0.042309 0.287647 0.295753 0.183527 0.233074 0.013084 0.177956 0.624655 0.184305 0.609569 0.280349 0.055866 0.054216 0.140035 0.769824 0.027844 0.062297 0.025699 0.019245 0.803188 0.151868 0.017665 0.952534 0.017959 0.011842 0.011842 0.017959 0.952534 0.017665 0.151868 0.803188 0.019245 0.025699 0.062297 0.027844 0.769824 0.140035 0.054216 0.055866 0.280349 0.609569 0.318602 0.153321 0.444835 0.083243 0.142670 0.217877 0.284296 0.355157 0.239398 0.480004 0.142078 0.138520 0.463144 0.145186 0.275331 0.116339 0.135417 0.179510 0.239355 0.445717 0.270859 0.185506 0.083106 0.460529 0.407926 0.057181 0.078281 0.456612 Consensus sequence: HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW ---------SSGCKTGCSSK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Reverse Complement Forward 7 11 0.017271 Species: Mus musculus Original motif 0.399785 0.446658 0.111435 0.042122 0.535175 0.103991 0.089706 0.271128 0.078171 0.387987 0.375083 0.158759 0.309001 0.519142 0.070618 0.101239 0.201844 0.255818 0.323149 0.219190 0.534101 0.109845 0.235026 0.121028 0.656038 0.037473 0.261484 0.045006 0.315713 0.164290 0.471815 0.048182 0.651960 0.009412 0.328237 0.010391 0.937365 0.017313 0.007516 0.037807 0.019983 0.044238 0.012387 0.923392 0.061195 0.021485 0.881645 0.035675 0.017521 0.952998 0.013139 0.016342 0.254160 0.029735 0.493023 0.223082 0.239200 0.593324 0.114503 0.052973 0.610822 0.071539 0.099169 0.218470 0.166610 0.389712 0.204400 0.239278 0.227752 0.361626 0.178497 0.232125 0.537030 0.182466 0.026035 0.254470 0.235902 0.151006 0.043788 0.569304 0.081851 0.250397 0.590059 0.077693 0.340417 0.189613 0.272075 0.197895 Consensus sequence: MWSMBAARRATGCDCABHATGD Reverse complement motif 0.197895 0.189613 0.272075 0.340417 0.081851 0.590059 0.250397 0.077693 0.569304 0.151006 0.043788 0.235902 0.254470 0.182466 0.026035 0.537030 0.227752 0.178497 0.361626 0.232125 0.166610 0.204400 0.389712 0.239278 0.218470 0.071539 0.099169 0.610822 0.239200 0.114503 0.593324 0.052973 0.254160 0.493023 0.029735 0.223082 0.017521 0.013139 0.952998 0.016342 0.061195 0.881645 0.021485 0.035675 0.923392 0.044238 0.012387 0.019983 0.037807 0.017313 0.007516 0.937365 0.010391 0.009412 0.328237 0.651960 0.315713 0.471815 0.164290 0.048182 0.045006 0.037473 0.261484 0.656038 0.121028 0.109845 0.235026 0.534101 0.201844 0.323149 0.255818 0.219190 0.309001 0.070618 0.519142 0.101239 0.078171 0.375083 0.387987 0.158759 0.271128 0.103991 0.089706 0.535175 0.399785 0.111435 0.446658 0.042122 Consensus sequence: DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR ------YSSGCAYGCSS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 29 Motif name: cCGCGGrCACG Original motif 0.000000 0.600000 0.200000 0.200000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 0.800000 0.200000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.800000 0.200000 0.000000 0.200000 0.000000 0.800000 0.000000 Consensus sequence: CCGCGGRCACG Reserve complement motif 0.200000 0.800000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.200000 0.600000 0.200000 Consensus sequence: CGTGKCCGCGG ************************************************************************ Best Matches for Motif ID 29 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Original Motif Original Motif Backward 2 11 0.022021 Species: Mus musculus Original motif 0.142624 0.111294 0.283688 0.462394 0.221170 0.081404 0.499138 0.198288 0.290070 0.042114 0.604904 0.062912 0.109755 0.559510 0.215454 0.115281 0.111745 0.022727 0.850580 0.014948 0.015907 0.942291 0.005561 0.036241 0.088509 0.003729 0.902805 0.004957 0.004957 0.902805 0.003729 0.088509 0.036241 0.005561 0.942291 0.015907 0.014948 0.850580 0.022727 0.111745 0.325358 0.049424 0.519652 0.105566 0.062912 0.604904 0.042114 0.290070 0.214335 0.388248 0.125912 0.271505 0.128984 0.372787 0.092390 0.405839 0.269058 0.098422 0.484016 0.148504 0.362176 0.156050 0.188642 0.293132 Consensus sequence: DDGCGCGCGCRCHYRD Reverse complement motif 0.293132 0.156050 0.188642 0.362176 0.269058 0.484016 0.098422 0.148504 0.405839 0.372787 0.092390 0.128984 0.214335 0.125912 0.388248 0.271505 0.062912 0.042114 0.604904 0.290070 0.325358 0.519652 0.049424 0.105566 0.014948 0.022727 0.850580 0.111745 0.036241 0.942291 0.005561 0.015907 0.004957 0.003729 0.902805 0.088509 0.088509 0.902805 0.003729 0.004957 0.015907 0.005561 0.942291 0.036241 0.111745 0.850580 0.022727 0.014948 0.109755 0.215454 0.559510 0.115281 0.290070 0.604904 0.042114 0.062912 0.221170 0.499138 0.081404 0.198288 0.462394 0.111294 0.283688 0.142624 Consensus sequence: DMMDGMGCGCGCGCHD Alignment: DDGCGCGCGCRCHYRD ----CCGCGGRCACG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Reverse Complement Reverse Complement Backward 9 11 0.024575 Species: Mus musculus Original motif 0.298336 0.418632 0.208054 0.074978 0.289907 0.015608 0.457100 0.237385 0.273583 0.077889 0.107860 0.540668 0.184954 0.161611 0.384390 0.269045 0.521826 0.156340 0.089019 0.232815 0.356716 0.131104 0.394857 0.117323 0.266669 0.108765 0.505273 0.119293 0.020778 0.047199 0.919524 0.012500 0.948536 0.018775 0.008113 0.024576 0.010822 0.964042 0.014701 0.010434 0.007428 0.019505 0.966351 0.006717 0.010025 0.975678 0.008648 0.005649 0.043796 0.120935 0.742979 0.092289 0.008252 0.250704 0.541132 0.199913 0.474428 0.044681 0.134430 0.346461 0.146597 0.421317 0.143166 0.288920 0.020540 0.181479 0.553811 0.244170 0.129612 0.173360 0.535219 0.161808 0.506084 0.158156 0.130983 0.204776 0.054872 0.103043 0.545792 0.296293 0.389882 0.171037 0.164162 0.274918 0.225861 0.314031 0.288872 0.171237 Consensus sequence: VDWDARRGACGCGGWHGGAKHV Reverse complement motif 0.225861 0.288872 0.314031 0.171237 0.274918 0.171037 0.164162 0.389882 0.054872 0.545792 0.103043 0.296293 0.204776 0.158156 0.130983 0.506084 0.129612 0.535219 0.173360 0.161808 0.020540 0.553811 0.181479 0.244170 0.146597 0.143166 0.421317 0.288920 0.346461 0.044681 0.134430 0.474428 0.008252 0.541132 0.250704 0.199913 0.043796 0.742979 0.120935 0.092289 0.010025 0.008648 0.975678 0.005649 0.007428 0.966351 0.019505 0.006717 0.010822 0.014701 0.964042 0.010434 0.024576 0.018775 0.008113 0.948536 0.020778 0.919524 0.047199 0.012500 0.266669 0.505273 0.108765 0.119293 0.356716 0.394857 0.131104 0.117323 0.232815 0.156340 0.089019 0.521826 0.184954 0.384390 0.161611 0.269045 0.540668 0.077889 0.107860 0.273583 0.289907 0.457100 0.015608 0.237385 0.298336 0.208054 0.418632 0.074978 Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV ---CGTGKCCGCGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Original Motif Original Motif Backward 4 11 0.027937 Species: Mus musculus Original motif 0.360404 0.193218 0.248888 0.197490 0.286498 0.224597 0.426555 0.062349 0.347032 0.440548 0.033161 0.179259 0.337062 0.193658 0.385751 0.083529 0.108793 0.005723 0.878300 0.007184 0.015151 0.973406 0.009324 0.002118 0.972117 0.003915 0.019783 0.004185 0.010144 0.980912 0.003106 0.005839 0.974864 0.007532 0.015914 0.001691 0.012441 0.939195 0.029256 0.019108 0.759620 0.106164 0.073819 0.060397 0.157234 0.818234 0.007449 0.017083 0.050076 0.063608 0.505171 0.381144 0.131903 0.538163 0.124608 0.205325 0.367623 0.286526 0.240931 0.104919 0.357798 0.317606 0.097711 0.226885 Consensus sequence: DVMVGCACACACKCVH Reverse complement motif 0.226885 0.317606 0.097711 0.357798 0.104919 0.286526 0.240931 0.367623 0.131903 0.124608 0.538163 0.205325 0.050076 0.505171 0.063608 0.381144 0.157234 0.007449 0.818234 0.017083 0.060397 0.106164 0.073819 0.759620 0.012441 0.029256 0.939195 0.019108 0.001691 0.007532 0.015914 0.974864 0.010144 0.003106 0.980912 0.005839 0.004185 0.003915 0.019783 0.972117 0.015151 0.009324 0.973406 0.002118 0.108793 0.878300 0.005723 0.007184 0.337062 0.385751 0.193658 0.083529 0.347032 0.033161 0.440548 0.179259 0.286498 0.426555 0.224597 0.062349 0.197490 0.193218 0.248888 0.360404 Consensus sequence: HBGYGTGTGTGCVRVD Alignment: DVMVGCACACACKCVH --CCGCGGRCACG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Reverse Complement Forward 2 11 0.028538 Species: Mus musculus Original motif 0.211547 0.282708 0.203472 0.302273 0.141988 0.722437 0.054854 0.080721 0.032605 0.877172 0.012432 0.077792 0.115126 0.070606 0.781290 0.032979 0.003516 0.990021 0.002265 0.004198 0.004715 0.982482 0.009897 0.002906 0.001627 0.975937 0.001662 0.020774 0.262352 0.731732 0.002730 0.003187 0.005890 0.985756 0.002081 0.006273 0.022893 0.090460 0.649322 0.237324 0.023038 0.859949 0.037913 0.079101 0.567633 0.057394 0.166792 0.208181 0.176597 0.331265 0.125308 0.366830 0.183049 0.183774 0.226793 0.406384 Consensus sequence: HCCGCCCCCGCAHB Reverse complement motif 0.406384 0.183774 0.226793 0.183049 0.366830 0.331265 0.125308 0.176597 0.208181 0.057394 0.166792 0.567633 0.023038 0.037913 0.859949 0.079101 0.022893 0.649322 0.090460 0.237324 0.005890 0.002081 0.985756 0.006273 0.262352 0.002730 0.731732 0.003187 0.001627 0.001662 0.975937 0.020774 0.004715 0.009897 0.982482 0.002906 0.003516 0.002265 0.990021 0.004198 0.115126 0.781290 0.070606 0.032979 0.032605 0.012432 0.877172 0.077792 0.141988 0.054854 0.722437 0.080721 0.302273 0.282708 0.203472 0.211547 Consensus sequence: VHTGCGGGGGCGGH Alignment: VHTGCGGGGGCGGH -CCGCGGRCACG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Reverse Complement Forward 9 11 0.033538 Species: Mus musculus Original motif 0.120938 0.344851 0.124072 0.410138 0.220931 0.169844 0.422396 0.186829 0.127752 0.260812 0.103811 0.507625 0.140641 0.405473 0.287668 0.166218 0.296957 0.155579 0.301094 0.246370 0.219647 0.287193 0.154072 0.339087 0.049294 0.026059 0.121789 0.802859 0.520042 0.289284 0.173423 0.017251 0.049190 0.943472 0.004308 0.003030 0.902609 0.006767 0.074770 0.015854 0.003221 0.971329 0.005512 0.019937 0.019937 0.005512 0.971329 0.003221 0.015854 0.074770 0.006767 0.902609 0.003030 0.004308 0.943472 0.049190 0.003497 0.088920 0.685942 0.221641 0.802859 0.121789 0.026059 0.049294 0.334544 0.155170 0.275193 0.235092 0.275957 0.132104 0.454982 0.136957 0.134097 0.254352 0.422940 0.188611 0.396163 0.432784 0.051281 0.119772 0.276474 0.115627 0.419844 0.188056 0.160759 0.088061 0.649863 0.101318 0.203314 0.166595 0.106821 0.523270 Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Reverse complement motif 0.523270 0.166595 0.106821 0.203314 0.160759 0.649863 0.088061 0.101318 0.276474 0.419844 0.115627 0.188056 0.396163 0.051281 0.432784 0.119772 0.134097 0.422940 0.254352 0.188611 0.275957 0.454982 0.132104 0.136957 0.235092 0.155170 0.275193 0.334544 0.049294 0.121789 0.026059 0.802859 0.003497 0.685942 0.088920 0.221641 0.003030 0.943472 0.004308 0.049190 0.902609 0.074770 0.006767 0.015854 0.019937 0.971329 0.005512 0.003221 0.003221 0.005512 0.971329 0.019937 0.015854 0.006767 0.074770 0.902609 0.049190 0.004308 0.943472 0.003030 0.017251 0.289284 0.173423 0.520042 0.802859 0.026059 0.121789 0.049294 0.339087 0.287193 0.154072 0.219647 0.296957 0.301094 0.155579 0.246370 0.140641 0.287668 0.405473 0.166218 0.507625 0.260812 0.103811 0.127752 0.220931 0.422396 0.169844 0.186829 0.410138 0.344851 0.124072 0.120938 Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM --------CCGCGGRCACG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Reverse Complement Backward 6 11 0.034043 Species: Mus musculus Original motif 0.104824 0.412716 0.254506 0.227955 0.644922 0.065476 0.140479 0.149122 0.201205 0.166164 0.347131 0.285501 0.360606 0.256316 0.150766 0.232313 0.199831 0.240681 0.279350 0.280137 0.234308 0.204076 0.321306 0.240310 0.274112 0.462435 0.111425 0.152028 0.067070 0.717501 0.073934 0.141496 0.106745 0.084442 0.658566 0.150247 0.025128 0.967053 0.003585 0.004234 0.006412 0.982989 0.003227 0.007371 0.009588 0.877620 0.002571 0.110221 0.621521 0.355443 0.015669 0.007366 0.002600 0.980275 0.004191 0.012934 0.118773 0.026658 0.783843 0.070725 0.022358 0.822101 0.024684 0.130857 0.713212 0.080912 0.128793 0.077084 0.166568 0.250955 0.107934 0.474544 0.225040 0.222494 0.163301 0.389166 0.268976 0.223206 0.265314 0.242504 0.137052 0.229058 0.148439 0.485451 0.135819 0.304550 0.141994 0.417637 0.272440 0.319501 0.230580 0.177478 Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Reverse complement motif 0.272440 0.230580 0.319501 0.177478 0.417637 0.304550 0.141994 0.135819 0.485451 0.229058 0.148439 0.137052 0.242504 0.223206 0.265314 0.268976 0.389166 0.222494 0.163301 0.225040 0.474544 0.250955 0.107934 0.166568 0.077084 0.080912 0.128793 0.713212 0.022358 0.024684 0.822101 0.130857 0.118773 0.783843 0.026658 0.070725 0.002600 0.004191 0.980275 0.012934 0.007366 0.355443 0.015669 0.621521 0.009588 0.002571 0.877620 0.110221 0.006412 0.003227 0.982989 0.007371 0.025128 0.003585 0.967053 0.004234 0.106745 0.658566 0.084442 0.150247 0.067070 0.073934 0.717501 0.141496 0.274112 0.111425 0.462435 0.152028 0.234308 0.321306 0.204076 0.240310 0.280137 0.240681 0.279350 0.199831 0.232313 0.256316 0.150766 0.360606 0.201205 0.347131 0.166164 0.285501 0.149122 0.065476 0.140479 0.644922 0.104824 0.254506 0.412716 0.227955 Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB -------CCGCGGRCACG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_secondary Original Motif Original Motif Forward 2 11 0.034586 Species: Mus musculus Original motif 0.142646 0.070072 0.573757 0.213525 0.142215 0.493588 0.067040 0.297157 0.024280 0.923170 0.017567 0.034984 0.015569 0.033118 0.937202 0.014111 0.039447 0.888724 0.020074 0.051755 0.016404 0.008157 0.963367 0.012073 0.063620 0.860169 0.044753 0.031458 0.787911 0.122939 0.024389 0.064761 0.260517 0.103413 0.509585 0.126484 0.203752 0.216621 0.251506 0.328121 0.081075 0.040917 0.820854 0.057154 0.096434 0.760303 0.054942 0.088321 0.266016 0.190184 0.384583 0.159217 0.223960 0.243225 0.228688 0.304127 Consensus sequence: GYCGCGCARBGCVB Reverse complement motif 0.304127 0.243225 0.228688 0.223960 0.266016 0.384583 0.190184 0.159217 0.096434 0.054942 0.760303 0.088321 0.081075 0.820854 0.040917 0.057154 0.328121 0.216621 0.251506 0.203752 0.260517 0.509585 0.103413 0.126484 0.064761 0.122939 0.024389 0.787911 0.063620 0.044753 0.860169 0.031458 0.016404 0.963367 0.008157 0.012073 0.039447 0.020074 0.888724 0.051755 0.015569 0.937202 0.033118 0.014111 0.024280 0.017567 0.923170 0.034984 0.142215 0.067040 0.493588 0.297157 0.142646 0.573757 0.070072 0.213525 Consensus sequence: VVGCVMTGCGCGKC Alignment: GYCGCGCARBGCVB -CCGCGGRCACG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Original Motif Original Motif Backward 3 11 0.035043 Species: Mus musculus Original motif 0.220880 0.102939 0.418146 0.258035 0.154303 0.210788 0.420671 0.214238 0.229141 0.160788 0.412818 0.197253 0.167193 0.404248 0.092489 0.336070 0.025978 0.931335 0.023830 0.018857 0.009150 0.002023 0.977342 0.011485 0.044768 0.024113 0.039091 0.892028 0.007577 0.008370 0.973767 0.010286 0.005251 0.264996 0.004018 0.725735 0.009165 0.002428 0.980566 0.007841 0.021296 0.956027 0.008893 0.013784 0.982532 0.003341 0.005773 0.008353 0.500983 0.226027 0.143944 0.129045 0.544466 0.285936 0.044719 0.124879 0.321158 0.168428 0.261827 0.248587 0.271460 0.263221 0.199083 0.266236 Consensus sequence: DBDHCGTGTGCAAMDH Reverse complement motif 0.266236 0.263221 0.199083 0.271460 0.248587 0.168428 0.261827 0.321158 0.124879 0.285936 0.044719 0.544466 0.129045 0.226027 0.143944 0.500983 0.008353 0.003341 0.005773 0.982532 0.021296 0.008893 0.956027 0.013784 0.009165 0.980566 0.002428 0.007841 0.725735 0.264996 0.004018 0.005251 0.007577 0.973767 0.008370 0.010286 0.892028 0.024113 0.039091 0.044768 0.009150 0.977342 0.002023 0.011485 0.025978 0.023830 0.931335 0.018857 0.167193 0.092489 0.404248 0.336070 0.229141 0.412818 0.160788 0.197253 0.154303 0.420671 0.210788 0.214238 0.220880 0.418146 0.102939 0.258035 Consensus sequence: HDYTTGCACACGDHBH Alignment: DBDHCGTGTGCAAMDH ---CCGCGGRCACG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00076 Rfxdc2_secondary Reverse Complement Reverse Complement Backward 3 11 0.035993 Species: Mus musculus Original motif 0.120124 0.369052 0.280026 0.230798 0.153013 0.175278 0.321983 0.349726 0.426573 0.206846 0.272112 0.094469 0.067213 0.665712 0.165815 0.101259 0.213424 0.152912 0.229260 0.404404 0.042427 0.193675 0.034144 0.729754 0.359927 0.038767 0.588911 0.012395 0.015079 0.017884 0.948607 0.018430 0.699438 0.007004 0.014579 0.278979 0.017282 0.022228 0.369181 0.591308 0.948823 0.011471 0.018805 0.020901 0.016175 0.947649 0.007710 0.028466 0.114584 0.334989 0.511562 0.038865 0.219114 0.247229 0.396478 0.137179 0.308087 0.178171 0.248356 0.265386 0.479300 0.125168 0.134837 0.260696 0.323493 0.230502 0.108189 0.337815 Consensus sequence: BBVCDTRGAKACSVDDH Reverse complement motif 0.337815 0.230502 0.108189 0.323493 0.260696 0.125168 0.134837 0.479300 0.265386 0.178171 0.248356 0.308087 0.219114 0.396478 0.247229 0.137179 0.114584 0.511562 0.334989 0.038865 0.016175 0.007710 0.947649 0.028466 0.020901 0.011471 0.018805 0.948823 0.591308 0.022228 0.369181 0.017282 0.278979 0.007004 0.014579 0.699438 0.015079 0.948607 0.017884 0.018430 0.359927 0.588911 0.038767 0.012395 0.729754 0.193675 0.034144 0.042427 0.404404 0.152912 0.229260 0.213424 0.067213 0.165815 0.665712 0.101259 0.094469 0.206846 0.272112 0.426573 0.349726 0.175278 0.321983 0.153013 0.120124 0.280026 0.369052 0.230798 Consensus sequence: HDDVSGTRTCMADGBVB Alignment: HDDVSGTRTCMADGBVB ----CGTGKCCGCGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Original Motif Reverse Complement Backward 3 11 0.036196 Species: Mus musculus Original motif 0.456612 0.057181 0.078281 0.407926 0.460529 0.185506 0.083106 0.270859 0.445717 0.179510 0.239355 0.135417 0.116339 0.145186 0.275331 0.463144 0.239398 0.142078 0.480004 0.138520 0.355157 0.217877 0.284296 0.142670 0.318602 0.444835 0.153321 0.083243 0.609569 0.055866 0.280349 0.054216 0.062297 0.769824 0.027844 0.140035 0.151868 0.019245 0.803188 0.025699 0.011842 0.952534 0.017959 0.017665 0.017665 0.017959 0.952534 0.011842 0.025699 0.803188 0.019245 0.151868 0.140035 0.027844 0.769824 0.062297 0.054216 0.280349 0.055866 0.609569 0.013084 0.624655 0.177956 0.184305 0.287647 0.183527 0.295753 0.233074 0.042309 0.345931 0.198458 0.413301 0.338138 0.266033 0.045367 0.350462 0.302850 0.155320 0.074662 0.467168 0.240926 0.068901 0.283055 0.407118 0.409954 0.183157 0.154186 0.252704 Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Reverse complement motif 0.252704 0.183157 0.154186 0.409954 0.407118 0.068901 0.283055 0.240926 0.467168 0.155320 0.074662 0.302850 0.350462 0.266033 0.045367 0.338138 0.413301 0.345931 0.198458 0.042309 0.287647 0.295753 0.183527 0.233074 0.013084 0.177956 0.624655 0.184305 0.609569 0.280349 0.055866 0.054216 0.140035 0.769824 0.027844 0.062297 0.025699 0.019245 0.803188 0.151868 0.017665 0.952534 0.017959 0.011842 0.011842 0.017959 0.952534 0.017665 0.151868 0.803188 0.019245 0.025699 0.062297 0.027844 0.769824 0.140035 0.054216 0.055866 0.280349 0.609569 0.318602 0.153321 0.444835 0.083243 0.142670 0.217877 0.284296 0.355157 0.239398 0.480004 0.142078 0.138520 0.463144 0.145186 0.275331 0.116339 0.135417 0.179510 0.239355 0.445717 0.270859 0.185506 0.083106 0.460529 0.407926 0.057181 0.078281 0.456612 Consensus sequence: HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW ---------CCGCGGRCACG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-18-2018 13:12:37 Runtime: 641.553922 seconds MOTIFSIM is written by Ngoc Tam L. 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