**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # PScanChIP_DM05.txt 16 1 RSAT_peak-motifs_DM05.txt 17 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches in Database for Each Motif (Highest to Lowest) ***************************************************************** Dataset #: 1 Motif ID: 1 Motif name: HNF4A Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Original Motif Original Motif Backward 2 13 0.0357776 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: HHHASATCAAAGVRHHH ---RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Original Motif Original Motif Backward 2 13 0.0357792 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH ---RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Forward 4 13 0.0359011 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD ---RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Original Motif Reverse Complement Forward 4 13 0.0360786 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: BDDASATCAAAGGMDDD ---RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Original Motif Backward 4 13 0.0405764 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: HVDDVCAGATGKYHBBV -RGGBCAAAGKYCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Reverse Complement Reverse Complement Forward 2 13 0.0409915 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HHBBMCTTTGTTHDDBH -TGMYCTTTGBCCK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondary Reverse Complement Reverse Complement Forward 1 13 0.0413218 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: HDTMCTTTGTSTVDBB TGMYCTTTGBCCK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Reverse Complement Reverse Complement Backward 4 13 0.0421105 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HHBTMCTTTGTTMDDVH -TGMYCTTTGBCCK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00086 Irf3_secondary Original Motif Original Motif Forward 1 13 0.0442004 Species: Mus musculus Consensus sequence (original motif): DDAGAADGGDSCDV Consensus sequence (reverse complement motif): BHGSDCCDTTCTHH Alignment: DDAGAADGGDSCDV RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondary Original Motif Reverse Complement Backward 1 13 0.0446884 Species: Mus musculus Consensus sequence (original motif): DDGMCCTBGTCCHYHV Consensus sequence (reverse complement motif): VHMDGGACVAGGRCDH Alignment: VHMDGGACVAGGRCDH ---RGGBCAAAGKYCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: NR2F1 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Original Motif Original Motif Backward 3 14 0.0452364 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: DDDYCCTTTGATSTDDV -TGAMCTTTGMMCYT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Reverse Complement Reverse Complement Backward 2 14 0.0453449 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD --AKGYYCAAAGRTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Original Motif Reverse Complement Backward 2 14 0.0461358 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH -------TGAMCTTTGMMCYT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Reverse Complement Original Motif Backward 2 14 0.0461768 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH --AKGYYCAAAGRTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Reverse Complement Original Motif Backward 2 14 0.0473628 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: HHHASATCAAAGVRHHH --AKGYYCAAAGRTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondary Original Motif Original Motif Forward 1 14 0.0480188 Species: Mus musculus Consensus sequence (original motif): DDGMCCTBGTCCHYHV Consensus sequence (reverse complement motif): VHMDGGACVAGGRCDH Alignment: DDGMCCTBGTCCHYHV TGAMCTTTGMMCYT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Reverse Complement Forward 2 14 0.0495447 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HHBBMCTTTGTTHDDBH -TGAMCTTTGMMCYT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Reverse Complement Backward 3 14 0.0499033 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HHBTMCTTTGTTMDDVH -TGAMCTTTGMMCYT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00023 Sox30_primary Original Motif Original Motif Backward 1 14 0.0511534 Species: Mus musculus Consensus sequence (original motif): DHDBAACAATDRHHHH Consensus sequence (reverse complement motif): HHHHMHATTGTTBDHD Alignment: DHDBAACAATDRHHHH --TGAMCTTTGMMCYT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Reverse Complement Reverse Complement Backward 1 14 0.0516973 Species: Mus musculus Consensus sequence (original motif): HHRCCBBWGGDCDB Consensus sequence (reverse complement motif): BDGHCCWBVGGKDH Alignment: BDGHCCWBVGGKDH AKGYYCAAAGRTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 3 Motif name: ESR1 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV ************************************************************************ Best Matches for Motif ID 3 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Reverse Complement Backward 4 20 0.0658405 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH VDBHMAGGTCACCCTGACCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Original Motif Reverse Complement Forward 1 20 0.0689748 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB VDBHMAGGTCACCCTGACCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Reverse Complement Reverse Complement Backward 3 20 0.0701247 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH MGGTCAGGGTGACCTRDBHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Original Motif Backward 3 20 0.0711267 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH MGGTCAGGGTGACCTRDBHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Original Motif Reverse Complement Forward 2 20 0.0742427 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: CVHBSCGGGTGGTCMHVHHCDH -VDBHMAGGTCACCCTGACCY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Original Motif Original Motif Forward 3 20 0.0747053 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: ABBBBVVRGACCACCCACRDBBM --VDBHMAGGTCACCCTGACCY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Original Motif Original Motif Forward 4 20 0.0749165 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH ---VDBHMAGGTCACCCTGACCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Original Motif Original Motif Forward 2 20 0.0759307 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB -VDBHMAGGTCACCCTGACCY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Backward 3 20 0.0762689 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB -MGGTCAGGGTGACCTRDBHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Original Motif Forward 1 20 0.0780113 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB VDBHMAGGTCACCCTGACCY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 4 Motif name: Esrrb Consensus sequence (original motif): VBBYCAAGGTCA Consensus sequence (reverse complement motif): TGACCTTGMBBB ************************************************************************ Best Matches for Motif ID 4 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Reverse Complement Reverse Complement Forward 6 12 0 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: HHBVHTGACCTTGVDHD -----TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_primary Original Motif Original Motif Forward 1 12 0.0205471 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCAHVHB Consensus sequence (reverse complement motif): BHVDTGACCTTTDVDD Alignment: DHBHAAAGGTCAHVHB VBBYCAAGGTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Original Motif Original Motif Forward 1 12 0.0214372 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCACVHD Consensus sequence (reverse complement motif): HHVGTGACCTTTDVDD Alignment: DHBHAAAGGTCACVHD VBBYCAAGGTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_secondary Reverse Complement Reverse Complement Forward 5 12 0.0430759 Species: Mus musculus Consensus sequence (original motif): VBVBCSGGGTCAVBBH Consensus sequence (reverse complement motif): HVBVTGACCCSGBVBV Alignment: HVBVTGACCCSGBVBV ----TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_primary Original Motif Original Motif Forward 1 12 0.0451776 Species: Mus musculus Consensus sequence (original motif): BDBVMGGGGTCAABHDV Consensus sequence (reverse complement motif): BHHVTTGACCCCYVVDB Alignment: BDBVMGGGGTCAABHDV VBBYCAAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Original Motif Backward 6 12 0.0482496 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH VBBYCAAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Reverse Complement Original Motif Backward 1 12 0.0499025 Species: Mus musculus Consensus sequence (original motif): DBHBDTGACCCCDHVHB Consensus sequence (reverse complement motif): VHBHDGGGGTCAHBHBD Alignment: VHBHDGGGGTCAHBHBD -----TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Reverse Complement Forward 8 12 0.0525354 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH -------TGACCTTGMBBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_secondary Reverse Complement Reverse Complement Backward 1 12 0.0580553 Species: Mus musculus Consensus sequence (original motif): BBHHAAAGTCCAMTHH Consensus sequence (reverse complement motif): HHAYTGGACTTTHDBV Alignment: HHAYTGGACTTTHDBV ----TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Reverse Complement Reverse Complement Backward 4 12 0.0609738 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB --------TGACCTTGMBBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 5 Motif name: ZEB1 Consensus sequence (original motif): CACCTD Consensus sequence (reverse complement motif): HAGGTG ************************************************************************ Best Matches for Motif ID 5 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_secondary Original Motif Reverse Complement Backward 4 6 0 Species: Mus musculus Consensus sequence (original motif): VBVDAGGTGTYGVBBV Consensus sequence (reverse complement motif): VVBVCKACACCTHVBV Alignment: VVBVCKACACCTHVBV -------CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00199 Six4 Reverse Complement Reverse Complement Forward 4 6 0.00433068 Species: Mus musculus Consensus sequence (original motif): ADDHATGACACCBHBBV Consensus sequence (reverse complement motif): BBVHVGGTGTCATHDDT Alignment: BBVHVGGTGTCATHDDT ---HAGGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_primary Original Motif Reverse Complement Forward 9 6 0.00524081 Species: Mus musculus Consensus sequence (original motif): BVHDAGGTGTGAAAHHH Consensus sequence (reverse complement motif): HHHTTTCACACCTDHBV Alignment: HHHTTTCACACCTDHBV --------CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Reverse Complement Forward 7 6 0.00911301 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB ------CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_secondary Original Motif Original Motif Backward 4 6 0.0233556 Species: Mus musculus Consensus sequence (original motif): BDDRVGACCACCHBDVB Consensus sequence (reverse complement motif): BBDVHGGTGGTCBKDDB Alignment: BDDRVGACCACCHBDVB --------CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Original Motif Backward 11 6 0.0233928 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH -------HAGGTG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Original Motif Original Motif Forward 12 6 0.0254338 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: HTBVVVDGGACCACCCRGRDBG -----------CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Original Motif Original Motif Forward 12 6 0.0290143 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: HDGHHBHRGACCACCCGSVDVG -----------CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_primary Original Motif Reverse Complement Backward 7 6 0.0309673 Species: Mus musculus Consensus sequence (original motif): VVDBAACAGBTGBYHB Consensus sequence (reverse complement motif): BDKVCABCTGTTBDBV Alignment: BDKVCABCTGTTBDBV ----CACCTD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Original Motif Original Motif Backward 6 6 0.031502 Species: Mus musculus Consensus sequence (original motif): HDADCCACTTRAAWTT Consensus sequence (reverse complement motif): AAWTTMAAGTGGHTDH Alignment: HDADCCACTTRAAWTT -----CACCTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 6 Motif name: Mycn Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD ************************************************************************ Best Matches for Motif ID 6 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Forward 3 10 0 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD --HSCACGTGGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Backward 7 10 0.00783793 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM -------GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Backward 7 10 0.0132858 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM ------GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Original Motif Forward 4 10 0.0227933 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD ---GCCACGTGSD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Original Motif Forward 3 10 0.0257011 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD --HSCACGTGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Reverse Complement Original Motif Backward 4 10 0.0344833 Species: Mus musculus Consensus sequence (original motif): BVABCCACTTGAMHTT Consensus sequence (reverse complement motif): AAHYTCAAGTGGBTBV Alignment: BVABCCACTTGAMHTT ---GCCACGTGSD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Reverse Complement Original Motif Backward 5 10 0.035228 Species: Mus musculus Consensus sequence (original motif): HDVRCCACTTGARADBD Consensus sequence (reverse complement motif): DVDTKTCAAGTGGKBDH Alignment: HDVRCCACTTGARADBD ---GCCACGTGSD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_primary Reverse Complement Reverse Complement Backward 4 10 0.0358581 Species: Mus musculus Consensus sequence (original motif): BHBBKKACGTMMVDBVB Consensus sequence (reverse complement motif): BVVDVRYACGTRYVBHB Alignment: BVVDVRYACGTRYVBHB ----GCCACGTGSD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_secondary Original Motif Reverse Complement Backward 4 10 0.03725 Species: Mus musculus Consensus sequence (original motif): DGVBCRACGTYGTYHH Consensus sequence (reverse complement motif): HHMACKACGTMGBVCD Alignment: HHMACKACGTMGBVCD ---HSCACGTGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Original Motif Original Motif Forward 7 10 0.0383187 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: WHVBVVMACGCGCGTCDYHWDH ------HSCACGTGGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 7 Motif name: REST Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA ************************************************************************ Best Matches for Motif ID 7 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Original Motif Original Motif Forward 3 21 0.0699178 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB --TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Reverse Complement Forward 1 21 0.0734685 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH GGYGCTGTCCATGGTGCTGAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Original Motif Forward 2 21 0.0740652 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -TTCAGCACCATGGACAGCKCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Forward 3 21 0.0750152 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH --TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Original Motif Backward 3 21 0.0751449 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH GGYGCTGTCCATGGTGCTGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Reverse Complement Backward 2 21 0.075832 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH -TTCAGCACCATGGACAGCKCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Original Motif Original Motif Backward 1 21 0.0773446 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DTVBDDRGACCACCCAGDWDGBH --TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Original Motif Forward 3 21 0.0775367 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT --TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Reverse Complement Backward 1 21 0.077977 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR -GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Original Motif Backward 1 21 0.0785969 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB --GGYGCTGTCCATGGTGCTGAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 8 Motif name: Myc Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV ************************************************************************ Best Matches for Motif ID 8 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Backward 5 10 0 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD --VGCACGTGGH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Forward 8 10 0.00631885 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM -------DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Backward 7 10 0.00821668 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM ------DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Reverse Complement Backward 4 10 0.0140005 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB ----VGCACGTGGH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Original Motif Backward 3 10 0.0308912 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD --VGCACGTGGH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Reverse Complement Original Motif Forward 4 10 0.0311723 Species: Mus musculus Consensus sequence (original motif): BVABCCACTTGAMHTT Consensus sequence (reverse complement motif): AAHYTCAAGTGGBTBV Alignment: BVABCCACTTGAMHTT ---DCCACGTGCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Reverse Complement Original Motif Backward 4 10 0.031308 Species: Mus musculus Consensus sequence (original motif): HDADCCACTTRAAWTT Consensus sequence (reverse complement motif): AAWTTMAAGTGGHTDH Alignment: HDADCCACTTRAAWTT ---DCCACGTGCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Reverse Complement Original Motif Forward 4 10 0.0334845 Species: Mus musculus Consensus sequence (original motif): HDVRCCACTTGARADBD Consensus sequence (reverse complement motif): DVDTKTCAAGTGGKBDH Alignment: HDVRCCACTTGARADBD ---DCCACGTGCV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00147 Nkx2-6 Reverse Complement Original Motif Backward 4 10 0.0345548 Species: Mus musculus Consensus sequence (original motif): DDADCCACTTAAVHTT Consensus sequence (reverse complement motif): AAHVTTAAGTGGHTDD Alignment: DDADCCACTTAAVHTT ---DCCACGTGCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Original Motif Backward 8 10 0.0363818 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV -----VGCACGTGGH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 9 Motif name: ESR2 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV ************************************************************************ Best Matches for Motif ID 9 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Original Motif Forward 4 18 0.0443894 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB ---VHRGGTCABDBTGMCCTB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Reverse Complement Forward 4 18 0.049219 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH ---VHRGGTCABDBTGMCCTB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Reverse Complement Backward 3 18 0.0509182 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM --VHRGGTCABDBTGMCCTB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Original Motif Forward 2 18 0.0527075 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB -BAGGYCABHBTGACCKHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Reverse Complement Backward 4 18 0.0541044 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH -BAGGYCABHBTGACCKHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Reverse Complement Original Motif Forward 3 18 0.0541108 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: VCTBHBVCTTGGWTACVVVVVDB --BAGGYCABHBTGACCKHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Original Motif Forward 4 18 0.0543733 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV ---VHRGGTCABDBTGMCCTB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Original Motif Backward 5 18 0.0548087 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH -BAGGYCABHBTGACCKHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Original Motif Reverse Complement Forward 5 18 0.055453 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR ----VHRGGTCABDBTGMCCTB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Original Motif Original Motif Backward 4 18 0.0566426 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH -VHRGGTCABDBTGMCCTB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 10 Motif name: NR1H2RXRA Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT ************************************************************************ Best Matches for Motif ID 10 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Reverse Complement Backward 1 17 0.0538452 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH -----GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Original Motif Original Motif Backward 1 17 0.0545098 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: BDHDDADAGATAAGADHBDHVD -----AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Forward 2 16 0.521114 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD- -AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Reverse Complement Original Motif Forward 2 16 0.527825 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: BDDASATCAAAGGMDDD- -GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Original Motif Original Motif Backward 2 16 0.531154 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: -BHHASATCAAAGGAHHH AAAGGTCAAAGGTCAAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Original Motif Original Motif Backward 2 16 0.531876 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: -HHHASATCAAAGVRHHH AAAGGTCAAAGGTCAAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Original Motif Forward 2 16 0.544403 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH- -AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Reverse Complement Reverse Complement Backward 2 16 0.544565 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: -HHBBMCTTTGTTHDDBH GTTGACCTTTGACCTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00019 Zbtb12_primary Reverse Complement Reverse Complement Backward 2 16 0.550511 Species: Mus musculus Consensus sequence (original motif): BDHRBGTTCTAGATCVB Consensus sequence (reverse complement motif): BBGATCTAGAACBKHDB Alignment: -BBGATCTAGAACBKHDB GTTGACCTTTGACCTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Original Motif Backward 2 16 0.552064 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: -HVDDVCAGATGKYHBBV AAAGGTCAAAGGTCAAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 11 Motif name: NR4A2 Consensus sequence (original motif): AAGGTCAC Consensus sequence (reverse complement motif): GTGACCTT ************************************************************************ Best Matches for Motif ID 11 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Reverse Complement Reverse Complement Forward 4 8 0 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCACVHD Consensus sequence (reverse complement motif): HHVGTGACCTTTDVDD Alignment: HHVGTGACCTTTDVDD ---GTGACCTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_primary Reverse Complement Reverse Complement Forward 4 8 0.0074527 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCAHVHB Consensus sequence (reverse complement motif): BHVDTGACCTTTDVDD Alignment: BHVDTGACCTTTDVDD ---GTGACCTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Original Motif Original Motif Forward 6 8 0.01542 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: DHDBCAAGGTCAHVBDH -----AAGGTCAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_secondary Original Motif Original Motif Forward 6 8 0.0395644 Species: Mus musculus Consensus sequence (original motif): VBVBCSGGGTCAVBBH Consensus sequence (reverse complement motif): HVBVTGACCCSGBVBV Alignment: VBVBCSGGGTCAVBBH -----AAGGTCAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondary Reverse Complement Original Motif Forward 1 8 0.0407874 Species: Mus musculus Consensus sequence (original motif): DDGMCCTBGTCCHYHV Consensus sequence (reverse complement motif): VHMDGGACVAGGRCDH Alignment: DDGMCCTBGTCCHYHV GTGACCTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Reverse Complement Original Motif Backward 6 8 0.0422933 Species: Mus musculus Consensus sequence (original motif): DBHBDTGACCCCDHVHB Consensus sequence (reverse complement motif): VHBHDGGGGTCAHBHBD Alignment: DBHBDTGACCCCDHVHB ----GTGACCTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Original Motif Backward 5 8 0.0447444 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH -----AAGGTCAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_secondary Original Motif Original Motif Forward 6 8 0.0481418 Species: Mus musculus Consensus sequence (original motif): BBHHAAAGTCCAMTHH Consensus sequence (reverse complement motif): HHAYTGGACTTTHDBV Alignment: BBHHAAAGTCCAMTHH -----AAGGTCAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00197 Hoxc9 Reverse Complement Reverse Complement Forward 8 8 0.0497679 Species: Mus musculus Consensus sequence (original motif): VDVGGTCATTAAHHDB Consensus sequence (reverse complement motif): VDHHTTAATGACCBHV Alignment: VDHHTTAATGACCBHV -------GTGACCTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_secondary Reverse Complement Original Motif Forward 5 8 0.0500062 Species: Mus musculus Consensus sequence (original motif): DBDDRTGCCCAWDHDV Consensus sequence (reverse complement motif): VHHDWTGGGCAMDHBH Alignment: DBDDRTGCCCAWDHDV ----GTGACCTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 12 Motif name: RORA_1 Consensus sequence (original motif): AWVDAGGTCA Consensus sequence (reverse complement motif): TGACCTDVWT ************************************************************************ Best Matches for Motif ID 12 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_primary Original Motif Original Motif Backward 5 10 0.0154749 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCAHVHB Consensus sequence (reverse complement motif): BHVDTGACCTTTDVDD Alignment: DHBHAAAGGTCAHVHB --AWVDAGGTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Reverse Complement Reverse Complement Forward 6 10 0.0176661 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: HHBVHTGACCTTGVDHD -----TGACCTDVWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Original Motif Original Motif Backward 5 10 0.0189599 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCACVHD Consensus sequence (reverse complement motif): HHVGTGACCTTTDVDD Alignment: DHBHAAAGGTCACVHD --AWVDAGGTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_secondary Original Motif Original Motif Backward 5 10 0.0331999 Species: Mus musculus Consensus sequence (original motif): VBVBCSGGGTCAVBBH Consensus sequence (reverse complement motif): HVBVTGACCCSGBVBV Alignment: VBVBCSGGGTCAVBBH --AWVDAGGTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_primary Original Motif Original Motif Forward 3 10 0.0341771 Species: Mus musculus Consensus sequence (original motif): BDBVMGGGGTCAABHDV Consensus sequence (reverse complement motif): BHHVTTGACCCCYVVDB Alignment: BDBVMGGGGTCAABHDV --AWVDAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Reverse Complement Original Motif Forward 6 10 0.0363566 Species: Mus musculus Consensus sequence (original motif): DBHBDTGACCCCDHVHB Consensus sequence (reverse complement motif): VHBHDGGGGTCAHBHBD Alignment: DBHBDTGACCCCDHVHB -----TGACCTDVWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Original Motif Backward 6 10 0.0391284 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH --AWVDAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_secondary Reverse Complement Original Motif Backward 2 10 0.0444205 Species: Mus musculus Consensus sequence (original motif): DBDDRTGCCCAWDHDV Consensus sequence (reverse complement motif): VHHDWTGGGCAMDHBH Alignment: DBDDRTGCCCAWDHDV -----TGACCTDVWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Reverse Complement Forward 1 10 0.0461434 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM AWVDAGGTCA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Original Motif Backward 3 10 0.0489571 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH -----------TGACCTDVWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 13 Motif name: MIZF Consensus sequence (original motif): BAACGTCCGC Consensus sequence (reverse complement motif): GCGGACGTTV ************************************************************************ Best Matches for Motif ID 13 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00419 Spic Original Motif Reverse Complement Forward 1 10 0 Species: Mus musculus Consensus sequence (original motif): VAAAGMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRCTTTB Alignment: DWACTTCCRCTTTB BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Original Motif Reverse Complement Forward 1 10 0.00379999 Species: Mus musculus Consensus sequence (original motif): BWAHSMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRSDTWV Alignment: BWAHSMGGAAGTWD BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Original Motif Original Motif Backward 5 10 0.0124101 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGKWTH Consensus sequence (reverse complement motif): HAWYCCGGAAGTHBBD Alignment: DBBHACTTCCGGKWTH --BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Original Motif Original Motif Forward 3 10 0.0128348 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGDWDB Consensus sequence (reverse complement motif): BDWDCCGGAAGTHBBD Alignment: DBBHACTTCCGGDWDB --BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00085 Sfpi1_primary Original Motif Reverse Complement Backward 5 10 0.0141516 Species: Mus musculus Consensus sequence (original motif): BDAWGVGGAAGTDH Consensus sequence (reverse complement motif): HDACTTCCBCWTDV Alignment: HDACTTCCBCWTDV BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00423 Gm5454 Reverse Complement Reverse Complement Forward 5 10 0.0144665 Species: Mus musculus Consensus sequence (original motif): VDHHACTTCCGGTHVH Consensus sequence (reverse complement motif): DVHACCGGAAGTHDDV Alignment: DVHACCGGAAGTHDDV ----GCGGACGTTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00412 Etv5 Reverse Complement Reverse Complement Forward 5 10 0.0155825 Species: Mus musculus Consensus sequence (original motif): VDHAACWTCCGGTHHH Consensus sequence (reverse complement motif): DHHACCGGAWGTTDDV Alignment: DHHACCGGAWGTTDDV ----GCGGACGTTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00015 Ehf_primary Reverse Complement Original Motif Forward 6 10 0.0162018 Species: Mus musculus Consensus sequence (original motif): VBDABCCGGAAGTDD Consensus sequence (reverse complement motif): DDACTTCCGGBTHBB Alignment: VBDABCCGGAAGTDD -----GCGGACGTTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00418 Etv6 Original Motif Original Motif Forward 4 10 0.0171234 Species: Mus musculus Consensus sequence (original motif): DVHBTACTTCCGGHTHB Consensus sequence (reverse complement motif): BHAHCCGGAAGTABDVD Alignment: DVHBTACTTCCGGHTHB ---BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00421 Etv1 Reverse Complement Original Motif Forward 6 10 0.0184147 Species: Mus musculus Consensus sequence (original motif): MVHBACCGGAAGTVDVH Consensus sequence (reverse complement motif): HBDBACTTCCGGTBHVY Alignment: MVHBACCGGAAGTVDVH -----GCGGACGTTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 14 Motif name: PPARGRXRA Consensus sequence (original motif): BTRGGDCARAGGKCA Consensus sequence (reverse complement motif): TGRCCTKTGHCCKAB ************************************************************************ Best Matches for Motif ID 14 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Backward 2 15 0.0304954 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Original Motif Original Motif Forward 2 15 0.0319475 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: HHHASATCAAAGVRHHH -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Original Motif Original Motif Backward 2 15 0.032779 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondary Original Motif Reverse Complement Backward 2 15 0.0334185 Species: Mus musculus Consensus sequence (original motif): DDGMCCTBGTCCHYHV Consensus sequence (reverse complement motif): VHMDGGACVAGGRCDH Alignment: VHMDGGACVAGGRCDH BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Original Motif Backward 2 15 0.0352539 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HBDDDAACAAAGRVBHH -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Original Motif Backward 2 15 0.0358782 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondary Reverse Complement Reverse Complement Backward 2 15 0.0374729 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: HDTMCTTTGTSTVDBB TGRCCTKTGHCCKAB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Original Motif Reverse Complement Forward 2 15 0.0379757 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: BDDASATCAAAGGMDDD -BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Reverse Complement Backward 2 15 0.0382733 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: DHHDGGGCGRGGKHBH BTRGGDCARAGGKCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_secondary Original Motif Reverse Complement Forward 1 15 0.0397168 Species: Mus musculus Consensus sequence (original motif): DDDYCCCATTGTVHABH Consensus sequence (reverse complement motif): HBTHVACAATGGGMDHD Alignment: DDDYCCCATTGTVHABH BTRGGDCARAGGKCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 15 Motif name: Tcfcp2l1 Consensus sequence (original motif): CCAGYYHVADCCRG Consensus sequence (reverse complement motif): CKGGDTBDMMCTGG ************************************************************************ Best Matches for Motif ID 15 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Original Motif Original Motif Backward 5 14 0.0527249 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH ----CCAGYYHVADCCRG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Original Motif Original Motif Backward 1 14 0.0551691 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH --------CCAGYYHVADCCRG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Original Motif Original Motif Forward 1 14 0.0560983 Species: Mus musculus Consensus sequence (original motif): HHRCCBBWGGDCDB Consensus sequence (reverse complement motif): BDGHCCWBVGGKDH Alignment: HHRCCBBWGGDCDB CCAGYYHVADCCRG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_secondary Original Motif Original Motif Backward 3 14 0.0566467 Species: Mus musculus Consensus sequence (original motif): CYDBYWTCCSMHBVVH Consensus sequence (reverse complement motif): DBVVDRSGGAWKVHKG Alignment: CYDBYWTCCSMHBVVH CCAGYYHVADCCRG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00075 Sox15_secondary Original Motif Reverse Complement Backward 1 14 0.0577636 Species: Mus musculus Consensus sequence (original motif): BBVAATGDMATTHVA Consensus sequence (reverse complement motif): TVDAATYDCATTVVV Alignment: TVDAATYDCATTVVV -CCAGYYHVADCCRG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00096 Sox13_secondary Reverse Complement Original Motif Forward 4 14 0.0587893 Species: Mus musculus Consensus sequence (original motif): DDDHTGGGTGGGHAHHD Consensus sequence (reverse complement motif): DHHTHCCCACCCAHDDH Alignment: DDDHTGGGTGGGHAHHD ---CKGGDTBDMMCTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Reverse Complement Forward 3 14 0.0590238 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC --CCAGYYHVADCCRG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Original Motif Forward 9 14 0.0596904 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH --------CCAGYYHVADCCRG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Original Motif Original Motif Backward 1 14 0.0597695 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB ---------CCAGYYHVADCCRG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Original Motif Backward 2 14 0.0598357 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH -------CKGGDTBDMMCTGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 16 Motif name: CTCF Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM ************************************************************************ Best Matches for Motif ID 16 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Original Motif Backward 1 19 0.0409369 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ----BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Original Motif Backward 4 19 0.0409815 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB -YDRCCASYAGRKGGCRSYV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Reverse Complement Backward 1 19 0.0431951 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH ---BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Reverse Complement Original Motif Forward 4 19 0.0469794 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ---BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Original Motif Original Motif Backward 5 19 0.0482204 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH YDRCCASYAGRKGGCRSYV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Reverse Complement Backward 4 19 0.0491604 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV -YDRCCASYAGRKGGCRSYV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Reverse Complement Original Motif Backward 2 19 0.0511535 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB ---BMSMGCCYMCTKSTGGMHM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Original Motif Original Motif Forward 1 19 0.0520741 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH YDRCCASYAGRKGGCRSYV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Reverse Complement Forward 1 19 0.0532334 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: DVVTTVGTGGGHGGYAMHWHHHY YDRCCASYAGRKGGCRSYV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Forward 3 19 0.0535675 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM --BMSMGCCYMCTKSTGGMHM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 17 Motif name: TgTGgTGTCACAGTGCTCC Consensus sequence (original motif): TGTGGTGTCACAGTGCTCC Consensus sequence (reverse complement motif): GGAGCACTGTGACACCACA ************************************************************************ Best Matches for Motif ID 17 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Original Motif Reverse Complement Backward 2 19 0.043204 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB ---TGTGGTGTCACAGTGCTCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Original Motif Forward 6 18 0.553914 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB- -----TGTGGTGTCACAGTGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00192 Six1 Reverse Complement Reverse Complement Forward 3 17 1.04528 Species: Mus musculus Consensus sequence (original motif): DHDRGGGTATCAHDHBT Consensus sequence (reverse complement motif): AVHDHTGATACCCMDHH Alignment: AVHDHTGATACCCMDHH-- --GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_2205.1 Original Motif Reverse Complement Backward 1 17 1.0459 Species: Mus musculus Consensus sequence (original motif): AVDHCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGHHVT Alignment: --WVVHWTWACAGCGHHVT TGTGGTGTCACAGTGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_1765.2 Original Motif Reverse Complement Backward 1 17 1.0462 Species: Mus musculus Consensus sequence (original motif): AVDVCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGBHBT Alignment: --WVVHWTWACAGCGBHBT TGTGGTGTCACAGTGCTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_primary Reverse Complement Original Motif Backward 3 17 1.04631 Species: Mus musculus Consensus sequence (original motif): BVHDAGGTGTGAAAHHH Consensus sequence (reverse complement motif): HHHTTTCACACCTDHBV Alignment: --HHHTTTCACACCTDHBV GGAGCACTGTGACACCACA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Reverse Complement Original Motif Forward 2 17 1.04807 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD-- -GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Reverse Complement Original Motif Forward 3 17 1.04831 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT-- --GGAGCACTGTGACACCACA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Original Motif Original Motif Backward 3 17 1.04867 Species: Mus musculus Consensus sequence (original motif): DBHBDTGACCCCDHVHB Consensus sequence (reverse complement motif): VHBHDGGGGTCAHBHBD Alignment: --DBHBDTGACCCCDHVHB TGTGGTGTCACAGTGCTCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00388 Six6_2267.4 Reverse Complement Reverse Complement Backward 1 17 1.0491 Species: Mus musculus Consensus sequence (original motif): DATRGGGTATCAHDWHT Consensus sequence (reverse complement motif): AHWDHTGATACCCKATD Alignment: --AHWDHTGATACCCKATD GGAGCACTGTGACACCACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 18 Motif name: sscCCCGCGcs Consensus sequence (original motif): BSCCCCGCGBS Consensus sequence (reverse complement motif): SBCGCGGGGSB ************************************************************************ Best Matches for Motif ID 18 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Reverse Complement Reverse Complement Forward 5 11 0.00934222 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: BHBHDTGGCGGGGBDHD ----SBCGCGGGGSB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_primary Reverse Complement Reverse Complement Backward 2 11 0.0105793 Species: Mus musculus Consensus sequence (original motif): BMCCCCCGGGGGGGB Consensus sequence (reverse complement motif): VCCCCCCCGGGGGRB Alignment: VCCCCCCCGGGGGRB ---SBCGCGGGGSB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_primary Original Motif Original Motif Backward 4 11 0.0112489 Species: Mus musculus Consensus sequence (original motif): BMCCCCCGGGGGGGB Consensus sequence (reverse complement motif): VCCCCCCCGGGGGRB Alignment: BMCCCCCGGGGGGGB -BSCCCCGCGBS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Backward 7 11 0.014467 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ------SBCGCGGGGSB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Reverse Complement Backward 4 11 0.0150561 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW --------SBCGCGGGGSB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Original Motif Reverse Complement Backward 4 11 0.0169049 Species: Mus musculus Consensus sequence (original motif): DDGCGCGCGCRCHYRD Consensus sequence (reverse complement motif): DMMDGMGCGCGCGCHD Alignment: DMMDGMGCGCGCGCHD --BSCCCCGCGBS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_primary Original Motif Original Motif Forward 2 11 0.0186112 Species: Mus musculus Consensus sequence (original motif): BHCCCCCGGGGGGG Consensus sequence (reverse complement motif): CCCCCCCGGGGGHB Alignment: BHCCCCCGGGGGGG -BSCCCCGCGBS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Reverse Complement Backward 8 11 0.0192401 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV ----BSCCCCGCGBS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Reverse Complement Reverse Complement Forward 3 11 0.0204596 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: BHHDYGGGGGGGGBVD --SBCGCGGGGSB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Reverse Complement Original Motif Backward 5 11 0.0232114 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB -------SBCGCGGGGSB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 19 Motif name: atactttggc Consensus sequence (original motif): ATACTTTGGC Consensus sequence (reverse complement motif): GCCAAAGTAT ************************************************************************ Best Matches for Motif ID 19 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00156 Msx2 Original Motif Reverse Complement Backward 4 10 0.0221581 Species: Mus musculus Consensus sequence (original motif): VVDGACYAATTAGYDHT Consensus sequence (reverse complement motif): ADHKCTAATTKGTCDBV Alignment: ADHKCTAATTKGTCDBV ----ATACTTTGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_secondary Original Motif Reverse Complement Backward 6 10 0.027519 Species: Mus musculus Consensus sequence (original motif): VVDBASACAAAGRADH Consensus sequence (reverse complement motif): HDTMCTTTGTSTVDBB Alignment: HDTMCTTTGTSTVDBB -ATACTTTGGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_secondary Reverse Complement Original Motif Backward 6 10 0.0285786 Species: Mus musculus Consensus sequence (original motif): BBHHAAAGTCCAMTHH Consensus sequence (reverse complement motif): HHAYTGGACTTTHDBV Alignment: BBHHAAAGTCCAMTHH -GCCAAAGTAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00418 Etv6 Reverse Complement Reverse Complement Forward 5 10 0.030488 Species: Mus musculus Consensus sequence (original motif): DVHBTACTTCCGGHTHB Consensus sequence (reverse complement motif): BHAHCCGGAAGTABDVD Alignment: BHAHCCGGAAGTABDVD ----GCCAAAGTAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Reverse Complement Reverse Complement Backward 3 10 0.0314685 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: BDDASATCAAAGGMDDD -----GCCAAAGTAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Reverse Complement Forward 3 10 0.0317293 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HHBTMCTTTGTTMDDVH --ATACTTTGGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Reverse Complement Forward 3 10 0.031914 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HHBBMCTTTGTTHDDBH --ATACTTTGGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_primary Reverse Complement Original Motif Forward 6 10 0.0323012 Species: Mus musculus Consensus sequence (original motif): DBBATGCCAACCHVHH Consensus sequence (reverse complement motif): DDBHGGTTGGCATVBD Alignment: DBBATGCCAACCHVHH -----GCCAAAGTAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00146 Pou6f1_3733.1 Original Motif Original Motif Backward 4 10 0.032571 Species: Mus musculus Consensus sequence (original motif): VHHVATAATGAGSTDDH Consensus sequence (reverse complement motif): DHDASCTCATTATVHHB Alignment: VHHVATAATGAGSTDDH ----ATACTTTGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Original Motif Backward 6 10 0.0330221 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: DDDYCCTTTGATCTDDV --ATACTTTGGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 20 Motif name: CagTGCTCCACTGTGgT Consensus sequence (original motif): CAGTGCTCCACTGTGBT Consensus sequence (reverse complement motif): ABCACAGTGGAGCACTG ************************************************************************ Best Matches for Motif ID 20 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Reverse Complement Reverse Complement Backward 4 17 0.0419306 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH --ABCACAGTGGAGCACTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Original Motif Backward 1 17 0.0501904 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW -----ABCACAGTGGAGCACTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Original Motif Reverse Complement Forward 3 17 0.0504778 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB --CAGTGCTCCACTGTGBT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_secondary Original Motif Original Motif Forward 1 17 0.0513094 Species: Mus musculus Consensus sequence (original motif): DDDTWCCCCCCGGDRVH Consensus sequence (reverse complement motif): HVKDCCGGGGGGWADDD Alignment: DDDTWCCCCCCGGDRVH CAGTGCTCCACTGTGBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Original Motif Reverse Complement Forward 2 17 0.0516506 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH -CAGTGCTCCACTGTGBT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_primary Reverse Complement Reverse Complement Forward 3 17 0.0523515 Species: Mus musculus Consensus sequence (original motif): HADTBVADGATGCATCMTGMVHB Consensus sequence (reverse complement motif): VHVRCAYGATGCATCDTVVADTH Alignment: VHVRCAYGATGCATCDTVVADTH --ABCACAGTGGAGCACTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Reverse Complement Reverse Complement Forward 3 17 0.053668 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: CVHBSCGGGTGGTCMHVHHCDH --ABCACAGTGGAGCACTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Original Motif Forward 6 17 0.0539016 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT -----ABCACAGTGGAGCACTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_primary Reverse Complement Reverse Complement Forward 1 17 0.0558205 Species: Mus musculus Consensus sequence (original motif): HHDATGTGCACATAMDH Consensus sequence (reverse complement motif): HHRTATGTGCACATHHD Alignment: HHRTATGTGCACATHHD ABCACAGTGGAGCACTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Original Motif Reverse Complement Forward 5 17 0.0558674 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: BDVBCDACGCKCGCGTBHRKHD ----CAGTGCTCCACTGTGBT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 21 Motif name: AmTGTGACACCACAGT Consensus sequence (original motif): AMTGTGACACCACAGT Consensus sequence (reverse complement motif): ACTGTGGTGTCACART ************************************************************************ Best Matches for Motif ID 21 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00020 Atf1_primary Original Motif Original Motif Forward 1 16 0.0273934 Species: Mus musculus Consensus sequence (original motif): DBDRTGACGTCAYHRD Consensus sequence (reverse complement motif): DMDMTGACGTCAKHBD Alignment: DBDRTGACGTCAYHRD AMTGTGACACCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00159 Six2 Original Motif Reverse Complement Forward 2 16 0.0303245 Species: Mus musculus Consensus sequence (original motif): DAKRGGGTATCACDWHT Consensus sequence (reverse complement motif): AHWDGTGATACCCMRTD Alignment: AHWDGTGATACCCMRTD -AMTGTGACACCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00103 Jundm2_primary Original Motif Original Motif Forward 1 16 0.0344928 Species: Mus musculus Consensus sequence (original motif): BBGATGACGTCAYCVH Consensus sequence (reverse complement motif): HVGMTGACGTCATCBB Alignment: BBGATGACGTCAYCVH AMTGTGACACCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00122 Tgif1 Reverse Complement Reverse Complement Forward 1 16 0.0348371 Species: Mus musculus Consensus sequence (original motif): DABWWTGACAGCTVVBD Consensus sequence (reverse complement motif): DBVVAGCTGTCAWWVTH Alignment: DBVVAGCTGTCAWWVTH ACTGTGGTGTCACART- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00195 Six3 Reverse Complement Original Motif Backward 2 16 0.0349083 Species: Mus musculus Consensus sequence (original motif): DATRGGGTATCAHHWHT Consensus sequence (reverse complement motif): AHWHDTGATACCCKATH Alignment: DATRGGGTATCAHHWHT ACTGTGGTGTCACART- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00388 Six6_2267.4 Reverse Complement Original Motif Backward 2 16 0.0354092 Species: Mus musculus Consensus sequence (original motif): DATRGGGTATCAHDWHT Consensus sequence (reverse complement motif): AHWDHTGATACCCKATD Alignment: DATRGGGTATCAHDWHT ACTGTGGTGTCACART- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00192 Six1 Reverse Complement Original Motif Forward 1 16 0.0354313 Species: Mus musculus Consensus sequence (original motif): DHDRGGGTATCAHDHBT Consensus sequence (reverse complement motif): AVHDHTGATACCCMDHH Alignment: DHDRGGGTATCAHDHBT ACTGTGGTGTCACART- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00199 Six4 Original Motif Original Motif Forward 2 16 0.0355151 Species: Mus musculus Consensus sequence (original motif): ADDHATGACACCBHBBV Consensus sequence (reverse complement motif): BBVHVGGTGTCATHDDT Alignment: ADDHATGACACCBHBBV -AMTGTGACACCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Original Motif Original Motif Forward 2 16 0.0362492 Species: Mus musculus Consensus sequence (original motif): DBHBDTGACCCCDHVHB Consensus sequence (reverse complement motif): VHBHDGGGGTCAHBHBD Alignment: DBHBDTGACCCCDHVHB -AMTGTGACACCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00388 Six6_2267.5 Original Motif Reverse Complement Backward 1 16 0.0374881 Species: Mus musculus Consensus sequence (original motif): DDDRGGGTATCAWHWHT Consensus sequence (reverse complement motif): AHWHWTGATACCCKDDD Alignment: DDDRGGGTATCAWHWHT -AMTGTGACACCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 22 Motif name: CACTGTGrYrtCACAGTGswsCAcT Consensus sequence (original motif): CACTGTGRTRTCACAGTGSWSCACT Consensus sequence (reverse complement motif): AGTGSWSCACTGTGAMAMCACAGTG ************************************************************************ Best Matches for Motif ID 22 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Backward 2 21 0.0558366 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: ----HHBDHDDAACAATDRHHHHHBW CACTGTGRTRTCACAGTGSWSCACT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Reverse Complement Backward 6 20 0.55477 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: -----VMYDHDGMCCHCCKBGVVAAVH AGTGSWSCACTGTGAMAMCACAGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Reverse Complement Original Motif Backward 5 19 1.05722 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: ------DTVBDDRGACCACCCAGDWDGBH AGTGSWSCACTGTGAMAMCACAGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Reverse Complement Forward 7 19 1.05946 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB------ ------AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Original Motif Reverse Complement Forward 8 18 1.5496 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: HTBVVVDGGACCACCCRGRDBG------- -------CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_primary Original Motif Reverse Complement Forward 8 18 1.55149 Species: Mus musculus Consensus sequence (original motif): HADTBVADGATGCATCMTGMVHB Consensus sequence (reverse complement motif): VHVRCAYGATGCATCDTVVADTH Alignment: HADTBVADGATGCATCMTGMVHB------- -------CACTGTGRTRTCACAGTGSWSCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Reverse Complement Original Motif Forward 5 18 1.55607 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: HDGHHBHRGACCACCCGSVDVG------- ----AGTGSWSCACTGTGAMAMCACAGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00228 Bapx1 Reverse Complement Original Motif Backward 8 17 2.04247 Species: Mus musculus Consensus sequence (original motif): VHHAACCACTTAAVVAH Consensus sequence (reverse complement motif): DTBVTTAAGTGGTTHHV Alignment: --------DTBVTTAAGTGGTTHHV AGTGSWSCACTGTGAMAMCACAGTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Original Motif Reverse Complement Backward 3 17 2.04316 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: --------DDBBBCACTGCABTBBB CACTGTGRTRTCACAGTGSWSCACT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_1765.2 Reverse Complement Original Motif Backward 6 17 2.04346 Species: Mus musculus Consensus sequence (original motif): AVDVCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGBHBT Alignment: --------WVVHWTWACAGCGBHBT AGTGSWSCACTGTGAMAMCACAGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 23 Motif name: TGGAGCACTGTGACAcCACAGTGg Consensus sequence (original motif): TGGAGCACTGTGACAVCACAGTGG Consensus sequence (reverse complement motif): CCACTGTGVTGTCACAGTGCTCCA ************************************************************************ Best Matches for Motif ID 23 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Reverse Complement Reverse Complement Forward 4 21 0.0391954 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB--- ---CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Reverse Complement Reverse Complement Forward 3 21 0.0400271 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT--- --CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Reverse Complement Reverse Complement Backward 5 20 0.535486 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: ----DBCDWHCTGGGTGGTCMDHBBAH CCACTGTGVTGTCACAGTGCTCCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Reverse Complement Reverse Complement Backward 5 20 0.536069 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: ----BTBVTCVTGGGTGGTCMVVDVBB CCACTGTGVTGTCACAGTGCTCCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Original Motif Reverse Complement Backward 4 20 0.539704 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: ----HGDHVHKGACCACCCGGBGBGDB TGGAGCACTGTGACAVCACAGTGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Original Motif Reverse Complement Backward 7 18 1.53819 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: ------DVTTVVCVYGGHGGYCHHDMYB TGGAGCACTGTGACAVCACAGTGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00122 Tgif1 Original Motif Original Motif Forward 6 17 2.02534 Species: Mus musculus Consensus sequence (original motif): DABWWTGACAGCTVVBD Consensus sequence (reverse complement motif): DBVVAGCTGTCAWWVTH Alignment: DABWWTGACAGCTVVBD------- -----TGGAGCACTGTGACAVCACAGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00159 Six2 Reverse Complement Original Motif Backward 6 17 2.02571 Species: Mus musculus Consensus sequence (original motif): DAKRGGGTATCACDWHT Consensus sequence (reverse complement motif): AHWDGTGATACCCMRTD Alignment: -------AHWDGTGATACCCMRTD CCACTGTGVTGTCACAGTGCTCCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00192 Six1 Reverse Complement Original Motif Forward 3 17 2.02892 Species: Mus musculus Consensus sequence (original motif): DHDRGGGTATCAHDHBT Consensus sequence (reverse complement motif): AVHDHTGATACCCMDHH Alignment: AVHDHTGATACCCMDHH------- --CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00076 Rfxdc2_secondary Reverse Complement Reverse Complement Forward 4 17 2.0292 Species: Mus musculus Consensus sequence (original motif): BBVCDTRGAKACSVDDH Consensus sequence (reverse complement motif): HDDVSGTRTCMADGBVB Alignment: HDDVSGTRTCMADGBVB------- ---CCACTGTGVTGTCACAGTGCTCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 24 Motif name: ssCCCCGCSssk Consensus sequence (original motif): SBCCCCGCCSBB Consensus sequence (reverse complement motif): BBSGGCGGGGBS ************************************************************************ Best Matches for Motif ID 24 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Original Motif Backward 4 12 0.0114847 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB --SBCCCCGCCSBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Forward 3 12 0.0165262 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD --SBCCCCGCCSBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Original Motif Backward 3 12 0.0276137 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB --SBCCCCGCCSBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Original Motif Reverse Complement Forward 2 12 0.0328578 Species: Mus musculus Consensus sequence (original motif): VHDADGGCGCGCSHW Consensus sequence (reverse complement motif): WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB -SBCCCCGCCSBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Original Motif Original Motif Forward 2 12 0.0336734 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH -SBCCCCGCCSBB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_primary Original Motif Reverse Complement Forward 2 12 0.0345737 Species: Mus musculus Consensus sequence (original motif): VHDARGGCGCGCVHH Consensus sequence (reverse complement motif): HHVGCGCGCCKTDHB Alignment: HHVGCGCGCCKTDHB -SBCCCCGCCSBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondary Reverse Complement Reverse Complement Backward 3 12 0.0347468 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: HVDVGGGHGGGGDBHB --BBSGGCGGGGBS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Reverse Complement Reverse Complement Forward 3 12 0.0358124 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: BHHHWGGGGCGGBBVH --BBSGGCGGGGBS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Original Motif Forward 9 12 0.0365354 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV --------SBCCCCGCCSBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Reverse Complement Backward 6 12 0.0389727 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW -----BBSGGCGGGGBS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 25 Motif name: wwCCAmAGTCmt Consensus sequence (original motif): DDCCAMAGTCHB Consensus sequence (reverse complement motif): VDGACTRTGGDD ************************************************************************ Best Matches for Motif ID 25 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Original Motif Original Motif Backward 5 12 0.00927341 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: DHDBCAAGGTCAHVBDH -DDCCAMAGTCHB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_secondary Original Motif Original Motif Forward 1 12 0.0157554 Species: Mus musculus Consensus sequence (original motif): BBHHAAAGTCCAMTHH Consensus sequence (reverse complement motif): HHAYTGGACTTTHDBV Alignment: BBHHAAAGTCCAMTHH DDCCAMAGTCHB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00023 Sox30_primary Reverse Complement Original Motif Forward 3 12 0.0218941 Species: Mus musculus Consensus sequence (original motif): DHDBAACAATDRHHHH Consensus sequence (reverse complement motif): HHHHMHATTGTTBDHD Alignment: DHDBAACAATDRHHHH --VDGACTRTGGDD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00028 Tcfap2e_primary Original Motif Reverse Complement Backward 2 12 0.023236 Species: Mus musculus Consensus sequence (original motif): HHHGCCTSAGGCDAD Consensus sequence (reverse complement motif): DTHGCCTSAGGCHHH Alignment: DTHGCCTSAGGCHHH --DDCCAMAGTCHB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Original Motif Backward 6 12 0.0235871 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW -----VDGACTRTGGDD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00095 Zfp691_secondary Original Motif Reverse Complement Backward 4 12 0.0240897 Species: Mus musculus Consensus sequence (original motif): DABBWGACTCCTHDVHV Consensus sequence (reverse complement motif): VHBDDAGGAGTCWBBTD Alignment: VHBDDAGGAGTCWBBTD --DDCCAMAGTCHB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00004 Sox14_secondary Reverse Complement Original Motif Backward 2 12 0.025783 Species: Mus musculus Consensus sequence (original motif): BKBASACAATRGHBB Consensus sequence (reverse complement motif): BBDCMATTGTSTBRB Alignment: BKBASACAATRGHBB --VDGACTRTGGDD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00081 Mybl1_primary Reverse Complement Original Motif Backward 3 12 0.026472 Species: Mus musculus Consensus sequence (original motif): HDDDHAACCGTTAHHHD Consensus sequence (reverse complement motif): DHHHTAACGGTTHDHDH Alignment: HDDDHAACCGTTAHHHD ---VDGACTRTGGDD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00052 Osr2_primary Original Motif Reverse Complement Backward 2 12 0.027027 Species: Mus musculus Consensus sequence (original motif): HHVHACRGTAGCHHHD Consensus sequence (reverse complement motif): HHHHGCTACKGTHVHH Alignment: HHHHGCTACKGTHVHH ---DDCCAMAGTCHB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Reverse Complement Reverse Complement Forward 3 12 0.0270662 Species: Mus musculus Consensus sequence (original motif): HDHDDCCAGACABBHVH Consensus sequence (reverse complement motif): HVHBVTGTCTGGDDHDD Alignment: HVHBVTGTCTGGDDHDD --VDGACTRTGGDD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 26 Motif name: CAcCACAGTGGAGCAct Consensus sequence (original motif): CAHCACAGTGGAGCACT Consensus sequence (reverse complement motif): AGTGCTCCACTGTGDTG ************************************************************************ Best Matches for Motif ID 26 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Original Motif Reverse Complement Forward 2 17 0.0381337 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH -CAHCACAGTGGAGCACT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Reverse Complement Reverse Complement Forward 1 17 0.0393208 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: BBBAVTGCAGTGBBVDD AGTGCTCCACTGTGDTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Backward 2 17 0.0441166 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW ----CAHCACAGTGGAGCACT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Reverse Complement Forward 4 17 0.0477617 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB ---AGTGCTCCACTGTGDTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Original Motif Original Motif Forward 1 17 0.0479423 Species: Mus musculus Consensus sequence (original motif): HDVRCCACTTGARADBD Consensus sequence (reverse complement motif): DVDTKTCAAGTGGKBDH Alignment: HDVRCCACTTGARADBD CAHCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_primary Original Motif Reverse Complement Backward 6 17 0.0484681 Species: Mus musculus Consensus sequence (original motif): HADTBVADGATGCATCMTGMVHB Consensus sequence (reverse complement motif): VHVRCAYGATGCATCDTVVADTH Alignment: VHVRCAYGATGCATCDTVVADTH -CAHCACAGTGGAGCACT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Reverse Complement Reverse Complement Forward 1 17 0.0487437 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV AGTGCTCCACTGTGDTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Reverse Complement Forward 1 17 0.048891 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB AGTGCTCCACTGTGDTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Original Motif Reverse Complement Backward 5 17 0.0491352 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: CVHBSCGGGTGGTCMHVHHCDH -CAHCACAGTGGAGCACT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Original Motif Original Motif Forward 4 17 0.0515016 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB ---CAHCACAGTGGAGCACT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 27 Motif name: AgTGCTCCACTGTGgTGTCACAgT Consensus sequence (original motif): AGTGCTCCACTGTGGTGTCACAGT Consensus sequence (reverse complement motif): ACTGTGACACCACAGTGGAGCACT ************************************************************************ Best Matches for Motif ID 27 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Reverse Complement Original Motif Forward 1 23 0.0509731 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB- ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Original Motif Reverse Complement Forward 4 21 1.0488 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DTVBDDRGACCACCCAGDWDGBH--- ---AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Reverse Complement Forward 3 21 1.05087 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB--- --ACTGTGACACCACAGTGGAGCACT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Reverse Complement Reverse Complement Backward 5 18 2.54748 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: ------CBDMCMGGGTGGTCCHVBVBAH ACTGTGACACCACAGTGGAGCACT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Original Motif Original Motif Backward 1 17 3.0367 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: -------HAAWDTGCTGACDWARH AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_secondary Original Motif Original Motif Backward 7 17 3.04028 Species: Mus musculus Consensus sequence (original motif): DDDYCCCATTGTVHABH Consensus sequence (reverse complement motif): HBTHVACAATGGGMDHD Alignment: -------DDDYCCCATTGTVHABH AGTGCTCCACTGTGGTGTCACAGT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Original Motif Reverse Complement Forward 1 17 3.04347 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: DDBBBCACTGCABTBBB------- AGTGCTCCACTGTGGTGTCACAGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Reverse Complement Reverse Complement Backward 5 17 3.04662 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: -------VDDAGATCAAAGGKDDD ACTGTGACACCACAGTGGAGCACT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_secondary Original Motif Reverse Complement Backward 7 17 3.04663 Species: Mus musculus Consensus sequence (original motif): DDBVHATAGGGGRBRMB Consensus sequence (reverse complement motif): BYMBKCCCCTATDVBHD Alignment: -------DDBVHATAGGGGRBRMB AGTGCTCCACTGTGGTGTCACAGT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00148 Hdx Reverse Complement Original Motif Backward 8 17 3.04907 Species: Mus musculus Consensus sequence (original motif): DDKDHGAAATCAHHBHV Consensus sequence (reverse complement motif): BDBDHTGATTTCDHYDD Alignment: -------BDBDHTGATTTCDHYDD ACTGTGACACCACAGTGGAGCACT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 28 Motif name: ssGCkTGCssk Consensus sequence (original motif): SSGCKTGCSSK Consensus sequence (reverse complement motif): YSSGCAYGCSS ************************************************************************ Best Matches for Motif ID 28 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Original Motif Original Motif Backward 1 11 0.00463328 Species: Mus musculus Consensus sequence (original motif): VHDADGGCGCGCSHW Consensus sequence (reverse complement motif): WHSGCGCGCCHTDHB Alignment: VHDADGGCGCGCSHW ----SSGCKTGCSSK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00094 Zfp128_primary Original Motif Original Motif Backward 3 11 0.00482124 Species: Mus musculus Consensus sequence (original motif): BHHDKGGCGTACCCBHD Consensus sequence (reverse complement motif): DHVGGGTACGCCRDHDV Alignment: BHHDKGGCGTACCCBHD ----SSGCKTGCSSK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_secondary Reverse Complement Reverse Complement Backward 1 11 0.00562779 Species: Mus musculus Consensus sequence (original motif): DBDDRTGCCCAWDHDV Consensus sequence (reverse complement motif): VHHDWTGGGCAMDHBH Alignment: VHHDWTGGGCAMDHBH -----YSSGCAYGCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Original Motif Original Motif Forward 3 11 0.00595984 Species: Mus musculus Consensus sequence (original motif): DDGCGCGCGCRCHYRD Consensus sequence (reverse complement motif): DMMDGMGCGCGCGCHD Alignment: DDGCGCGCGCRCHYRD --SSGCKTGCSSK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_primary Original Motif Reverse Complement Forward 2 11 0.00821725 Species: Mus musculus Consensus sequence (original motif): VHDARGGCGCGCVHH Consensus sequence (reverse complement motif): HHVGCGCGCCKTDHB Alignment: HHVGCGCGCCKTDHB -SSGCKTGCSSK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Reverse Complement Backward 1 11 0.0109259 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD ---SSGCKTGCSSK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Reverse Complement Backward 4 11 0.0150199 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV --------SSGCKTGCSSK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Reverse Complement Reverse Complement Forward 2 11 0.0160778 Species: Mus musculus Consensus sequence (original motif): BDWAGGCGTGBCHHD Consensus sequence (reverse complement motif): HHDGBCACGCCTWDB Alignment: HHDGBCACGCCTWDB -YSSGCAYGCSS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Original Motif Reverse Complement Backward 3 11 0.0171602 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW ---------SSGCKTGCSSK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Reverse Complement Forward 7 11 0.0172713 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR ------YSSGCAYGCSS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 29 Motif name: cCGCGGrCACG Consensus sequence (original motif): CCGCGGRCACG Consensus sequence (reverse complement motif): CGTGKCCGCGG ************************************************************************ Best Matches for Motif ID 29 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Original Motif Original Motif Backward 2 11 0.0220206 Species: Mus musculus Consensus sequence (original motif): DDGCGCGCGCRCHYRD Consensus sequence (reverse complement motif): DMMDGMGCGCGCGCHD Alignment: DDGCGCGCGCRCHYRD ----CCGCGGRCACG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Reverse Complement Reverse Complement Backward 9 11 0.024575 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV ---CGTGKCCGCGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Original Motif Original Motif Forward 3 11 0.0279366 Species: Mus musculus Consensus sequence (original motif): DVMVGCACACACKCVH Consensus sequence (reverse complement motif): HBGYGTGTGTGCVRVD Alignment: DVMVGCACACACKCVH --CCGCGGRCACG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Reverse Complement Forward 2 11 0.0285381 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: VHTGCGGGGGCGGH -CCGCGGRCACG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Reverse Complement Forward 9 11 0.0335378 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM --------CCGCGGRCACG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Reverse Complement Backward 6 11 0.0340428 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB -------CCGCGGRCACG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_secondary Original Motif Original Motif Forward 2 11 0.0345855 Species: Mus musculus Consensus sequence (original motif): GYCGCGCARBGCVB Consensus sequence (reverse complement motif): VVGCVMTGCGCGKC Alignment: GYCGCGCARBGCVB -CCGCGGRCACG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Original Motif Original Motif Backward 3 11 0.0350434 Species: Mus musculus Consensus sequence (original motif): DBDHCGTGTGCAAMDH Consensus sequence (reverse complement motif): HDYTTGCACACGDHBH Alignment: DBDHCGTGTGCAAMDH ---CCGCGGRCACG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00076 Rfxdc2_secondary Reverse Complement Reverse Complement Backward 3 11 0.0359928 Species: Mus musculus Consensus sequence (original motif): BBVCDTRGAKACSVDDH Consensus sequence (reverse complement motif): HDDVSGTRTCMADGBVB Alignment: HDDVSGTRTCMADGBVB ----CGTGKCCGCGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Original Motif Reverse Complement Backward 3 11 0.0361963 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW ---------CCGCGGRCACG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 30 Motif name: taaacgatgcc Consensus sequence (original motif): TAAACGATGCC Consensus sequence (reverse complement motif): GGCATCGTTTA ************************************************************************ Best Matches for Motif ID 30 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00114 Homez Original Motif Reverse Complement Backward 3 11 0.0207645 Species: Mus musculus Consensus sequence (original motif): AHWWMATCGTTTTBADD Consensus sequence (reverse complement motif): HDTVAAAACGATRWWHT Alignment: HDTVAAAACGATRWWHT ----TAAACGATGCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Reverse Complement Reverse Complement Forward 1 11 0.0294316 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: VVVWTTGTTTAMATTWD GGCATCGTTTA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Original Motif Original Motif Backward 1 11 0.030091 Species: Mus musculus Consensus sequence (original motif): HDHADGTAAACAAAVVH Consensus sequence (reverse complement motif): DVVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH ------TAAACGATGCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Reverse Complement Reverse Complement Backward 7 11 0.0306614 Species: Mus musculus Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: BBVTTTGTTTACATTDD GGCATCGTTTA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Reverse Complement Original Motif Forward 10 11 0.0342477 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: DBBVDDDRTRGCGTCBBYTHGA ---------GGCATCGTTTA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00040 Irf5_primary Reverse Complement Reverse Complement Forward 3 11 0.0345017 Species: Mus musculus Consensus sequence (original motif): DDDWAYCGAAACYDV Consensus sequence (reverse complement motif): BDKGTTTCGKTWDDD Alignment: BDKGTTTCGKTWDDD --GGCATCGTTTA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_primary Original Motif Reverse Complement Forward 3 11 0.0351616 Species: Mus musculus Consensus sequence (original motif): HADTBVADGATGCATCMTGMVHB Consensus sequence (reverse complement motif): VHVRCAYGATGCATCDTVVADTH Alignment: VHVRCAYGATGCATCDTVVADTH --TAAACGATGCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00232 Dobox4 Reverse Complement Reverse Complement Backward 2 11 0.0371486 Species: Mus musculus Consensus sequence (original motif): HWHWTAGATACCCYWTD Consensus sequence (reverse complement motif): DAWKGGGTATCTAWHWH Alignment: DAWKGGGTATCTAWHWH -----GGCATCGTTTA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Reverse Complement Reverse Complement Backward 7 11 0.0384798 Species: Mus musculus Consensus sequence (original motif): HHWAWGTAAAYAAAVDB Consensus sequence (reverse complement motif): BDVTTTKTTTACWTWHH Alignment: BDVTTTKTTTACWTWHH GGCATCGTTTA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00011 Irf6_primary Reverse Complement Reverse Complement Forward 6 11 0.0388532 Species: Mus musculus Consensus sequence (original motif): HDDAHCGAAACYAVDDD Consensus sequence (reverse complement motif): DHDBTKGTTTCGHTHDD Alignment: DHDBTKGTTTCGHTHDD -----GGCATCGTTTA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 31 Motif name: ctatacggacg Consensus sequence (original motif): CTATACGGACG Consensus sequence (reverse complement motif): CGTCCGTATAG ************************************************************************ Best Matches for Motif ID 31 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00038 Spdef_primary Original Motif Reverse Complement Forward 3 11 0.027939 Species: Mus musculus Consensus sequence (original motif): VHRCATCCGGATHHBB Consensus sequence (reverse complement motif): VVHHATCCGGATGKHV Alignment: VVHHATCCGGATGKHV --CTATACGGACG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Original Motif Forward 1 11 0.0308121 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV CTATACGGACG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Original Motif Reverse Complement Forward 1 11 0.0328673 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGKWTH Consensus sequence (reverse complement motif): HAWYCCGGAAGTHBBD Alignment: DBBHACTTCCGGKWTH CTATACGGACG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00418 Etv6 Reverse Complement Original Motif Backward 1 11 0.0334005 Species: Mus musculus Consensus sequence (original motif): DVHBTACTTCCGGHTHB Consensus sequence (reverse complement motif): BHAHCCGGAAGTABDVD Alignment: BHAHCCGGAAGTABDVD ------CGTCCGTATAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Original Motif Original Motif Forward 1 11 0.0336391 Species: Mus musculus Consensus sequence (original motif): BWAHSMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRSDTWV Alignment: BWAHSMGGAAGTWD CTATACGGACG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Reverse Complement Original Motif Backward 2 11 0.0346533 Species: Mus musculus Consensus sequence (original motif): DBDHCGTGTGCAAMDH Consensus sequence (reverse complement motif): HDYTTGCACACGDHBH Alignment: DBDHCGTGTGCAAMDH ----CGTCCGTATAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00135 Hoxc12 Original Motif Reverse Complement Forward 5 11 0.0360998 Species: Mus musculus Consensus sequence (original motif): HHRGGTCGTAAAWHBDH Consensus sequence (reverse complement motif): DDVHWTTTACGACCKHH Alignment: DDVHWTTTACGACCKHH ----CTATACGGACG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_primary Reverse Complement Reverse Complement Backward 3 11 0.0365466 Species: Mus musculus Consensus sequence (original motif): BHBBKKACGTMMVDBVB Consensus sequence (reverse complement motif): BVVDVRYACGTRYVBHB Alignment: BVVDVRYACGTRYVBHB ----CGTCCGTATAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00015 Ehf_primary Original Motif Original Motif Forward 2 11 0.0367131 Species: Mus musculus Consensus sequence (original motif): VBDABCCGGAAGTDD Consensus sequence (reverse complement motif): DDACTTCCGGBTHBB Alignment: VBDABCCGGAAGTDD -CTATACGGACG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00421 Etv1 Reverse Complement Reverse Complement Backward 2 11 0.0373 Species: Mus musculus Consensus sequence (original motif): MVHBACCGGAAGTVDVH Consensus sequence (reverse complement motif): HBDBACTTCCGGTBHVY Alignment: HBDBACTTCCGGTBHVY -----CGTCCGTATAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 32 Motif name: gCGCGCsCgsG Consensus sequence (original motif): GCGCGCSCGCG Consensus sequence (reverse complement motif): CGCGSGCGCGC ************************************************************************ Best Matches for Motif ID 32 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Original Motif Reverse Complement Backward 2 11 0 Species: Mus musculus Consensus sequence (original motif): DDGCGCGCGCRCHYRD Consensus sequence (reverse complement motif): DMMDGMGCGCGCGCHD Alignment: DMMDGMGCGCGCGCHD ----GCGCGCSCGCG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Reverse Complement Reverse Complement Backward 5 11 0.0102009 Species: Mus musculus Consensus sequence (original motif): VHDADGGCGCGCSHW Consensus sequence (reverse complement motif): WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB CGCGSGCGCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_primary Reverse Complement Reverse Complement Forward 1 11 0.0124455 Species: Mus musculus Consensus sequence (original motif): VHDARGGCGCGCVHH Consensus sequence (reverse complement motif): HHVGCGCGCCKTDHB Alignment: HHVGCGCGCCKTDHB CGCGSGCGCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Original Motif Backward 8 11 0.0192204 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: WHVBVVMACGCGCGTCDYHWDH ----CGCGSGCGCGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Reverse Complement Original Motif Forward 8 11 0.0231982 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB -------CGCGSGCGCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Original Motif Backward 3 11 0.0289369 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB -GCGCGCSCGCG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Original Motif Forward 7 11 0.0297254 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV ------GCGCGCSCGCG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00088 Plagl1_primary Reverse Complement Original Motif Forward 2 11 0.0316913 Species: Mus musculus Consensus sequence (original motif): BHDGGGGSSCCCCBVV Consensus sequence (reverse complement motif): VBVGGGGSSCCCCHHV Alignment: BHDGGGGSSCCCCBVV -CGCGSGCGCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Reverse Complement Backward 3 11 0.0323627 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB ----CGCGSGCGCGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Reverse Complement Reverse Complement Backward 7 11 0.039112 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV -----CGCGSGCGCGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 33 Motif name: srACyCCGAyr Consensus sequence (original motif): SRACYCCGAYR Consensus sequence (reverse complement motif): KKTCGGKGTKS ************************************************************************ Best Matches for Motif ID 33 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00024 Glis2_primary Reverse Complement Reverse Complement Backward 4 11 0.0129914 Species: Mus musculus Consensus sequence (original motif): HHHVGACCCCCCVBRD Consensus sequence (reverse complement motif): HKBBGGGGGGTCVHHH Alignment: HKBBGGGGGGTCVHHH --KKTCGGKGTKS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Original Motif Forward 7 11 0.013032 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV ------SRACYCCGAYR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_secondary Original Motif Reverse Complement Backward 5 11 0.0132459 Species: Mus musculus Consensus sequence (original motif): DDBVHATAGGGGRBRMB Consensus sequence (reverse complement motif): BYMBKCCCCTATDVBHD Alignment: BYMBKCCCCTATDVBHD --SRACYCCGAYR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_primary Original Motif Original Motif Forward 3 11 0.0135374 Species: Mus musculus Consensus sequence (original motif): HVVHACCCGCATVDHD Consensus sequence (reverse complement motif): DHDVATGCGGGTHVVH Alignment: HVVHACCCGCATVDHD --SRACYCCGAYR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_secondary Original Motif Original Motif Forward 4 11 0.0136908 Species: Mus musculus Consensus sequence (original motif): DKKWDACCCCCAHTDDV Consensus sequence (reverse complement motif): VDDAHTGGGGGTHWYYD Alignment: DKKWDACCCCCAHTDDV ---SRACYCCGAYR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_primary Reverse Complement Reverse Complement Forward 3 11 0.0146089 Species: Mus musculus Consensus sequence (original motif): DDVCCCCCCHAAWHB Consensus sequence (reverse complement motif): VHWTTHGGGGGGVDD Alignment: VHWTTHGGGGGGVDD --KKTCGGKGTKS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00040 Irf5_primary Reverse Complement Reverse Complement Forward 5 11 0.0148195 Species: Mus musculus Consensus sequence (original motif): DDDWAYCGAAACYDV Consensus sequence (reverse complement motif): BDKGTTTCGKTWDDD Alignment: BDKGTTTCGKTWDDD ----KKTCGGKGTKS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Original Motif Original Motif Forward 9 11 0.014859 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: ABBBBVVRGACCACCCACRDBBM --------SRACYCCGAYR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Reverse Complement Reverse Complement Backward 5 11 0.0153296 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD KKTCGGKGTKS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Reverse Complement Reverse Complement Backward 10 11 0.0155548 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DBCDWHCTGGGTGGTCMDHBBAH ---KKTCGGKGTKS--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-18-2018 13:12:37 Runtime: 641.554 seconds MOTIFSIM is written by Ngoc Tam L. 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