MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.2

INPUT

Input Parameters
Number of files: 4
Number of top significant motifs: 10
Number of best matches: 5
Similarity cutoff >= 0.75
Matching motif database: UniProbe Mus Musculus
Motif tree: Yes
Combined similar motifs: Yes
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
DREME_DM254.txt 45 1
MEME-CHIP_DM254.txt 24 2
PScanChIP_DM254.txt 63 3
RSAT_peak-motifs_DM254.txt 39 4

RESULTS

Best Matches in Database for Each Motif (Highest to Lowest)

Dataset #: 1 Motif ID: 1 Motif name: Motif 1

Original motif Reverse complement motif
Consensus sequence: AGRKGGCR Consensus sequence: KGCCYKCT

Best Matches for Motif ID 1 (Highest to Lowest)

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0

Alignment:
BVVHAGGGGGCGRDHHB
----AGRKGGCR-----

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00079
Motif name: Esrra_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0152094

Alignment:
VKBBAGGGGTCAHDBBH
----AGRKGGCR-----

Original motif Reverse complement motif
Consensus sequence: VKBBAGGGGTCAHDBBH Consensus sequence: DBBHHTGACCCCTBBYV


Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0160089

Alignment:
VHTGCGGGGGCGGH
----AGRKGGCR--

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH


Motif ID: UP00010
Motif name: Tcfap2b_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0244919

Alignment:
HTGCCMTVKGGCMD
-KGCCYKCT-----

Original motif Reverse complement motif
Consensus sequence: DYGCCYBARGGCAH Consensus sequence: HTGCCMTVKGGCMD


Motif ID: UP00070
Motif name: Gcm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0267457

Alignment:
DDBVHATAGGGGRBRMB
-------AGRKGGCR--

Original motif Reverse complement motif
Consensus sequence: DDBVHATAGGGGRBRMB Consensus sequence: BYMBKCCCCTATDVBHD


Dataset #: 1 Motif ID: 2 Motif name: Motif 2

Original motif Reverse complement motif
Consensus sequence: AAAAHAAA Consensus sequence: TTTDTTTT

Best Matches for Motif ID 2 (Highest to Lowest)

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0

Alignment:
DWAATRTAAACAAWVVB
------AAAAHAAA---

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD


Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.000495784

Alignment:
HBDDDAACAAAGRVBHH
---AAAAHAAA------

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH


Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.000916442

Alignment:
HBDDRAACAAAGRABHH
---AAAAHAAA------

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH


Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00246818

Alignment:
HDHADGTAAACAAAVVH
------AAAAHAAA---

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH


Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.00320862

Alignment:
DDAATGTAAACAAAVVB
------AAAAHAAA---

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD


Dataset #: 1 Motif ID: 3 Motif name: Motif 3

Original motif Reverse complement motif
Consensus sequence: CACACACA Consensus sequence: TGTGTGTG

Best Matches for Motif ID 3 (Highest to Lowest)

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0

Alignment:
HBGYGTGTGTGCVRVD
---TGTGTGTG-----

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD


Motif ID: UP00026
Motif name: Zscan4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0271943

Alignment:
BHHHTTGTGTGCKHVD
-----TGTGTGTG---

Original motif Reverse complement motif
Consensus sequence: HVHRGCACACAAHHHV Consensus sequence: BHHHTTGTGTGCKHVD


Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.0336839

Alignment:
DHVDTGTGCACAYAHDH
--------CACACACA-

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD


Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0355485

Alignment:
HVHBVTGTCTGGDDHDD
---TGTGTGTG------

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD


Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 12
Number of overlap: 8
Similarity score: 0.0404116

Alignment:
ABBBBVVRGACCACCCACRDBBM
-----------CACACACA----

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT


Dataset #: 1 Motif ID: 4 Motif name: Motif 4

Original motif Reverse complement motif
Consensus sequence: TTTWWAW Consensus sequence: WTWWAAA

Best Matches for Motif ID 4 (Highest to Lowest)

Motif ID: UP00207
Motif name: Hoxb9
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0

Alignment:
HDHHTTTTATRGCKMV
---TTTWWAW------

Original motif Reverse complement motif
Consensus sequence: VRRGCMATAAAAHHHD Consensus sequence: HDHHTTTTATRGCKMV


Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.000691918

Alignment:
VVVWTTGTTTAMATTWD
-------TTTWWAW---

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD


Motif ID: UP00134
Motif name: Hoxb13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0.00184871

Alignment:
VDHWTTTTATTGGDKB
---TTTWWAW------

Original motif Reverse complement motif
Consensus sequence: VRHCCAATAAAAWHHV Consensus sequence: VDHWTTTTATTGGDKB


Motif ID: UP00213
Motif name: Hoxa9
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0.00275206

Alignment:
WDTAWTTTWATGKCCGD
----TTTWWAW------

Original motif Reverse complement motif
Consensus sequence: DCGGYCATWAAAWTADW Consensus sequence: WDTAWTTTWATGKCCGD


Motif ID: UP00114
Motif name: Homez
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.00499979

Alignment:
AHWWMATCGTTTTBADD
---------TTTWWAW-

Original motif Reverse complement motif
Consensus sequence: AHWWMATCGTTTTBADD Consensus sequence: HDTVAAAACGATRWWHT


Dataset #: 1 Motif ID: 5 Motif name: Motif 5

Original motif Reverse complement motif
Consensus sequence: CCCCDCCC Consensus sequence: GGGDGGGG

Best Matches for Motif ID 5 (Highest to Lowest)

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0

Alignment:
HBDRCCMCGCCCHHHD
----CCCCDCCC----

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH


Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0165797

Alignment:
GKRGGGGGGGGGGBD
-----GGGDGGGG--

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD


Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.026633

Alignment:
BHHDYGGGGGGGGBVD
-----GGGDGGGG---

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0273225

Alignment:
MHHHWHYTMCCHCCCACVAABVH
-------CCCCDCCC--------

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0364166

Alignment:
VHTGCGGGGGCGGH
-----GGGDGGGG-

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH


Dataset #: 1 Motif ID: 6 Motif name: Motif 6

Original motif Reverse complement motif
Consensus sequence: CTGGRRA Consensus sequence: TMMCCAG

Best Matches for Motif ID 6 (Highest to Lowest)

Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 7
Similarity score: 0.00121838

Alignment:
HVHBVTGTCTGGDDHDD
--------CTGGRRA--

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD


Motif ID: UP00231
Motif name: Nkx2-2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.00386806

Alignment:
HDVRCCACTTGARADBD
-------CTGGRRA---

Original motif Reverse complement motif
Consensus sequence: HDVRCCACTTGARADBD Consensus sequence: DVDTKTCAAGTGGKBDH


Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.00420562

Alignment:
VBHHVCAGGTGCDVDHD
-TMMCCAG---------

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB


Motif ID: UP00161
Motif name: Hmbox1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00428647

Alignment:
BDDBTTAACTAGWDKHV
-----TMMCCAG-----

Original motif Reverse complement motif
Consensus sequence: VHRDWCTAGTTAABDDB Consensus sequence: BDDBTTAACTAGWDKHV


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 7
Similarity score: 0.010788

Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
--------TMMCCAG--------

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Dataset #: 1 Motif ID: 7 Motif name: Motif 7

Original motif Reverse complement motif
Consensus sequence: AGRAAA Consensus sequence: TTTMCT

Best Matches for Motif ID 7 (Highest to Lowest)

Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0

Alignment:
BDVTTTKTTTACWTWHH
-------TTTMCT----

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH


Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 6
Similarity score: 0.0125029

Alignment:
DVVTTTGTTTACDTHDH
-------TTTMCT----

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH


Motif ID: UP00090
Motif name: Elf3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0161149

Alignment:
DAHMMGGAARTDA
----AGRAAA---

Original motif Reverse complement motif
Consensus sequence: DAHMMGGAARTDA Consensus sequence: TDAMTTCCYYDTD


Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0165207

Alignment:
BBVTTTGTTTACATTDD
-------TTTMCT----

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD


Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0170044

Alignment:
HDHYYAATAAAAHHHH
------AGRAAA----

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD


Dataset #: 1 Motif ID: 8 Motif name: Motif 8

Original motif Reverse complement motif
Consensus sequence: AAATAH Consensus sequence: DTATTT

Best Matches for Motif ID 8 (Highest to Lowest)

Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0

Alignment:
HHWAWGTAAAYAAAVDB
-------AAATAH----

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH


Motif ID: UP00166
Motif name: Barhl1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.00310877

Alignment:
DDVKTAATTGGTTDTH
---DTATTT-------

Original motif Reverse complement motif
Consensus sequence: HAHAACCAATTARBDH Consensus sequence: DDVKTAATTGGTTDTH


Motif ID: UP00242
Motif name: Hoxc8
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.00420475

Alignment:
BHDDDGTAATTAHHDT
-------AAATAH---

Original motif Reverse complement motif
Consensus sequence: BHDDDGTAATTAHHDT Consensus sequence: AHDHTAATTACHHHHV


Motif ID: UP00179
Motif name: Pou2f3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.00508605

Alignment:
BHDTATGCAAATBHDV
--------AAATAH--

Original motif Reverse complement motif
Consensus sequence: BHDTATGCAAATBHDV Consensus sequence: BHHVATTTGCATAHHV


Motif ID: UP00202
Motif name: Dlx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.00517242

Alignment:
BHGVRDTAATTADY
-----DTATTT---

Original motif Reverse complement motif
Consensus sequence: BHGVRDTAATTADY Consensus sequence: MDTAATTAHMBCHB


Dataset #: 1 Motif ID: 9 Motif name: Motif 9

Original motif Reverse complement motif
Consensus sequence: GGTGGCWS Consensus sequence: SWGCCACC

Best Matches for Motif ID 9 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 11
Number of overlap: 8
Similarity score: 0

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
----------GGTGGCWS-----

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.0128982

Alignment:
HTBVVVDGGACCACCCRGRDBG
-------SWGCCACC-------

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 8
Similarity score: 0.0130995

Alignment:
HGDHVHKGACCACCCGGBGBGDB
------SWGCCACC---------

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00035
Motif name: Hic1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0142671

Alignment:
DBBATGCCAACCHVHH
---SWGCCACC-----

Original motif Reverse complement motif
Consensus sequence: DBBATGCCAACCHVHH Consensus sequence: DDBHGGTTGGCATVBD


Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0142765

Alignment:
HDGHHBHRGACCACCCGSVDVG
-------SWGCCACC-------

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH


Dataset #: 1 Motif ID: 10 Motif name: Motif 10

Original motif Reverse complement motif
Consensus sequence: CTGGCCTC Consensus sequence: GAGGCCAG

Best Matches for Motif ID 10 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0

Alignment:
TCDAMVBGACGCMAKDDDVBBD
-------GAGGCCAG-------

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD


Motif ID: UP00079
Motif name: Esrra_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.000107403

Alignment:
DBBHHTGACCCCTBBYV
----CTGGCCTC-----

Original motif Reverse complement motif
Consensus sequence: VKBBAGGGGTCAHDBBH Consensus sequence: DBBHHTGACCCCTBBYV


Motif ID: UP00020
Motif name: Atf1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.00300031

Alignment:
DMDMTGACGTCAKHBD
---CTGGCCTC-----

Original motif Reverse complement motif
Consensus sequence: DBDRTGACGTCAYHRD Consensus sequence: DMDMTGACGTCAKHBD


Motif ID: UP00053
Motif name: Rxra_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.00367302

Alignment:
DBHBDTGACCCCDHVHB
----CTGGCCTC-----

Original motif Reverse complement motif
Consensus sequence: DBHBDTGACCCCDHVHB Consensus sequence: VHBHDGGGGTCAHBHBD


Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.00526703

Alignment:
HHBVHTGACCTTGVDHD
----CTGGCCTC-----

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD


Dataset #: 1 Motif ID: 11 Motif name: Motif 11

Original motif Reverse complement motif
Consensus sequence: CTBCCTCY Consensus sequence: MGAGGBAG

Best Matches for Motif ID 11 (Highest to Lowest)

Motif ID: UP00085
Motif name: Sfpi1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0

Alignment:
HDACTTCCBCWTDV
---CTBCCTCY---

Original motif Reverse complement motif
Consensus sequence: BDAWGVGGAAGTDH Consensus sequence: HDACTTCCBCWTDV


Motif ID: UP00409
Motif name: Elf5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.000275689

Alignment:
BWAHSMGGAAGTWD
---MGAGGBAG---

Original motif Reverse complement motif
Consensus sequence: BWAHSMGGAAGTWD Consensus sequence: DWACTTCCRSDTWV


Motif ID: UP00419
Motif name: Spic
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.000518708

Alignment:
DWACTTCCRCTTTB
---CTBCCTCY---

Original motif Reverse complement motif
Consensus sequence: VAAAGMGGAAGTWD Consensus sequence: DWACTTCCRCTTTB


Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.00485464

Alignment:
BVVHAGGGGGCGRDHHB
----MGAGGBAG-----

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.00614662

Alignment:
DHHDGGGCGRGGKHBH
-------MGAGGBAG-

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH


Dataset #: 1 Motif ID: 12 Motif name: Motif 12

Original motif Reverse complement motif
Consensus sequence: GATGGCTC Consensus sequence: GAGCCATC

Best Matches for Motif ID 12 (Highest to Lowest)

Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0

Alignment:
HVDDVCAGATGKYHBBV
-------GATGGCTC--

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH


Motif ID: UP00033
Motif name: Zfp410_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.00155237

Alignment:
DVDDATGGGATGKMDDV
--------GATGGCTC-

Original motif Reverse complement motif
Consensus sequence: DVDDATGGGATGKMDDV Consensus sequence: BDDYYCATCCCATDDBD


Motif ID: UP00528
Motif name: Foxm1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.00582365

Alignment:
VHVRCAYGATGCATCDTVVADTH
-------GAGCCATC--------

Original motif Reverse complement motif
Consensus sequence: HADTBVADGATGCATCMTGMVHB Consensus sequence: VHVRCAYGATGCATCDTVVADTH


Motif ID: UP00103
Motif name: Jundm2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00695523

Alignment:
HDDKTGASTCAKHRDB
-----GAGCCATC---

Original motif Reverse complement motif
Consensus sequence: VDKDRTGASTCAYHDH Consensus sequence: HDDKTGASTCAKHRDB


Motif ID: UP00035
Motif name: Hic1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.00724333

Alignment:
DBBATGCCAACCHVHH
---GAGCCATC-----

Original motif Reverse complement motif
Consensus sequence: DBBATGCCAACCHVHH Consensus sequence: DDBHGGTTGGCATVBD


Dataset #: 1 Motif ID: 13 Motif name: Motif 13

Original motif Reverse complement motif
Consensus sequence: CAGYDCC Consensus sequence: GGDKCTG

Best Matches for Motif ID 13 (Highest to Lowest)

Motif ID: UP00205
Motif name: Pknox2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0202873

Alignment:
VHATTGACAGSKSVTH
-------CAGYDCC--

Original motif Reverse complement motif
Consensus sequence: HAVSRSCTGTCAATHB Consensus sequence: VHATTGACAGSKSVTH


Motif ID: UP00122
Motif name: Tgif1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.022836

Alignment:
DABWWTGACAGCTVVBD
--------CAGYDCC--

Original motif Reverse complement motif
Consensus sequence: DABWWTGACAGCTVVBD Consensus sequence: DBVVAGCTGTCAWWVTH


Motif ID: UP00258
Motif name: Tgif2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0283472

Alignment:
VBWTTGACAGCTVBTT
-------CAGYDCC--

Original motif Reverse complement motif
Consensus sequence: AABBAGCTGTCAAWVV Consensus sequence: VBWTTGACAGCTVBTT


Motif ID: UP00203
Motif name: Pknox1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0289437

Alignment:
VVWTTGACAGSTSBKD
-------CAGYDCC--

Original motif Reverse complement motif
Consensus sequence: DRVSASCTGTCAAWVV Consensus sequence: VVWTTGACAGSTSBKD


Motif ID: UP00193
Motif name: Rhox11_2205.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 7
Similarity score: 0.0291958

Alignment:
WVVHWTWACAGCGHHVT
--------CAGYDCC--

Original motif Reverse complement motif
Consensus sequence: AVDHCGCTGTWAWDVVW Consensus sequence: WVVHWTWACAGCGHHVT


Dataset #: 1 Motif ID: 14 Motif name: Motif 14

Original motif Reverse complement motif
Consensus sequence: TSTGTR Consensus sequence: MACASA

Best Matches for Motif ID 14 (Highest to Lowest)

Motif ID: UP00026
Motif name: Zscan4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0

Alignment:
BHHHTTGTGTGCKHVD
-----TSTGTR-----

Original motif Reverse complement motif
Consensus sequence: HVHRGCACACAAHHHV Consensus sequence: BHHHTTGTGTGCKHVD


Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.00200057

Alignment:
DVMVGCACACACKCVH
-----MACASA-----

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD


Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0148405

Alignment:
DHVDTGTGCACAYAHDH
--------MACASA---

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD


Motif ID: UP00042
Motif name: Gm397_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.0236149

Alignment:
HHDATGTGCACATAMDH
--------MACASA---

Original motif Reverse complement motif
Consensus sequence: HHDATGTGCACATAMDH Consensus sequence: HHRTATGTGCACATHHD


Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0266195

Alignment:
HDHRTAAACAAAHDDD
------MACASA----

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH


Dataset #: 1 Motif ID: 15 Motif name: Motif 15

Original motif Reverse complement motif
Consensus sequence: GCTCTTAA Consensus sequence: TTAAGAGC

Best Matches for Motif ID 15 (Highest to Lowest)

Motif ID: UP00173
Motif name: Hoxc13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0

Alignment:
DHWTTTTAMGAGBDHH
-----TTAAGAGC---

Original motif Reverse complement motif
Consensus sequence: HHDBCTCRTAAAAWHD Consensus sequence: DHWTTTTAMGAGBDHH


Motif ID: UP00183
Motif name: Hoxa13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00510293

Alignment:
DVWTTTTACGAGBHDH
-----TTAAGAGC---

Original motif Reverse complement motif
Consensus sequence: HDHBCTCGTAAAAWBD Consensus sequence: DVWTTTTACGAGBHDH


Motif ID: UP00228
Motif name: Bapx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0182341

Alignment:
DTBVTTAAGTGGTTHHV
----TTAAGAGC-----

Original motif Reverse complement motif
Consensus sequence: VHHAACCACTTAAVVAH Consensus sequence: DTBVTTAAGTGGTTHHV


Motif ID: UP00135
Motif name: Hoxc12
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0206445

Alignment:
DDVHWTTTACGACCKHH
------TTAAGAGC---

Original motif Reverse complement motif
Consensus sequence: HHRGGTCGTAAAWHBDH Consensus sequence: DDVHWTTTACGACCKHH


Motif ID: UP00177
Motif name: Hoxd12
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.023305

Alignment:
DHDHTTTTACGACVDHD
------TTAAGAGC---

Original motif Reverse complement motif
Consensus sequence: HHDVGTCGTAAAAHHHD Consensus sequence: DHDHTTTTACGACVDHD


Dataset #: 1 Motif ID: 16 Motif name: Motif 16

Original motif Reverse complement motif
Consensus sequence: GGAAGRR Consensus sequence: MMCTTCC

Best Matches for Motif ID 16 (Highest to Lowest)

Motif ID: UP00409
Motif name: Elf5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0

Alignment:
DWACTTCCRSDTWV
-MMCTTCC------

Original motif Reverse complement motif
Consensus sequence: BWAHSMGGAAGTWD Consensus sequence: DWACTTCCRSDTWV


Motif ID: UP00013
Motif name: Gabpa_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 7
Similarity score: 0.00097547

Alignment:
BHHHACTTCCGGTHHBD
---MMCTTCC-------

Original motif Reverse complement motif
Consensus sequence: HVHHACCGGAAGTDHHV Consensus sequence: BHHHACTTCCGGTHHBD


Motif ID: UP00420
Motif name: Elk3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.00131169

Alignment:
VBVDMCTTCCGGTVBVD
---MMCTTCC-------

Original motif Reverse complement motif
Consensus sequence: DVBBACCGGAAGYDVVV Consensus sequence: VBVDMCTTCCGGTVBVD


Motif ID: UP00419
Motif name: Spic
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.00204701

Alignment:
DWACTTCCRCTTTB
-MMCTTCC------

Original motif Reverse complement motif
Consensus sequence: VAAAGMGGAAGTWD Consensus sequence: DWACTTCCRCTTTB


Motif ID: UP00404
Motif name: Elf2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0.00230178

Alignment:
DBBHACTTCCGGDWDB
---MMCTTCC------

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGDWDB Consensus sequence: BDWDCCGGAAGTHBBD


Dataset #: 1 Motif ID: 17 Motif name: Motif 17

Original motif Reverse complement motif
Consensus sequence: CCDCCTCC Consensus sequence: GGAGGDGG

Best Matches for Motif ID 17 (Highest to Lowest)

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.00331161

Alignment:
GKRGGGGGGGGGGBD
---GGAGGDGG----

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD


Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.00990566

Alignment:
HCCGCCCCCGCAHB
-CCDCCTCC-----

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH


Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0127556

Alignment:
BDHHMCGCCCCCTHVBB
----CCDCCTCC-----

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0192546

Alignment:
BHHDYGGGGGGGGBVD
-----GGAGGDGG---

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 8
Similarity score: 0.0193256

Alignment:
MHHHWHYTMCCHCCCACVAABVH
---------CCDCCTCC------

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Dataset #: 1 Motif ID: 18 Motif name: Motif 18

Original motif Reverse complement motif
Consensus sequence: CATGYATG Consensus sequence: CATKCATG

Best Matches for Motif ID 18 (Highest to Lowest)

Motif ID: UP00236
Motif name: Irx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0094584

Alignment:
WVWDDTACATGTADDDW
-------CATGYATG--

Original motif Reverse complement motif
Consensus sequence: WDDDTACATGTADDWBW Consensus sequence: WVWDDTACATGTADDDW


Motif ID: UP00051
Motif name: Sox8_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0108518

Alignment:
DHATTCATGHVABV
-CATKCATG-----

Original motif Reverse complement motif
Consensus sequence: DHATTCATGHVABV Consensus sequence: VBTVHCATGAATDD


Motif ID: UP00055
Motif name: Hbp1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0133688

Alignment:
VDHATTCATTSAWDDH
--CATKCATG------

Original motif Reverse complement motif
Consensus sequence: HHDWTSAATGAATDDB Consensus sequence: VDHATTCATTSAWDDH


Motif ID: UP00223
Motif name: Irx3_2226.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0143625

Alignment:
DHDWBTACATGTAHDDD
-------CATGYATG--

Original motif Reverse complement motif
Consensus sequence: DDDHTACATGTAVWDHD Consensus sequence: DHDWBTACATGTAHDDD


Motif ID: UP00223
Motif name: Irx3_0920.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0163294

Alignment:
DDWWBTACATGTADDDD
-------CATGYATG--

Original motif Reverse complement motif
Consensus sequence: DDDDTACATGTAVWWHD Consensus sequence: DDWWBTACATGTADDDD


Dataset #: 1 Motif ID: 19 Motif name: Motif 19

Original motif Reverse complement motif
Consensus sequence: CAGSCAG Consensus sequence: CTGSCTG

Best Matches for Motif ID 19 (Highest to Lowest)

Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0

Alignment:
HDHDDCCAGACABBHVH
------CAGSCAG----

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD


Motif ID: UP00006
Motif name: Zic3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0064943

Alignment:
DVHCYTGCTGTGHDH
---CTGSCTG-----

Original motif Reverse complement motif
Consensus sequence: DDDCACAGCAKGHVD Consensus sequence: DVHCYTGCTGTGHDH


Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00786726

Alignment:
DVBCYTGCTGBGDDD
---CTGSCTG-----

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD


Motif ID: UP00092
Motif name: Myb_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 7
Similarity score: 0.0123596

Alignment:
DBVKGGCAGTTGGTHB
--CAGSCAG-------

Original motif Reverse complement motif
Consensus sequence: BDACCAACTGCCRBBH Consensus sequence: DBVKGGCAGTTGGTHB


Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0127545

Alignment:
DVHCCTGCTGBGDDB
---CTGSCTG-----

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB


Dataset #: 1 Motif ID: 20 Motif name: Motif 20

Original motif Reverse complement motif
Consensus sequence: CACGTR Consensus sequence: MACGTG

Best Matches for Motif ID 20 (Highest to Lowest)

Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0

Alignment:
DDHBHBSTCACGTGAHBBDHHM
--------CACGTR--------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM


Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.00504882

Alignment:
HHVBABCACGTGSTHD
------CACGTR----

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0050835

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
---------CACGTR--------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0336216

Alignment:
DHDBHGCACCTGBDDVB
------CACGTR-----

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB


Motif ID: UP00249
Motif name: Nkx2-5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0339468

Alignment:
HDADCCACTTRAAWTT
-----CACGTR-----

Original motif Reverse complement motif
Consensus sequence: HDADCCACTTRAAWTT Consensus sequence: AAWTTMAAGTGGHTDH


Dataset #: 1 Motif ID: 21 Motif name: Motif 21

Original motif Reverse complement motif
Consensus sequence: CCACYAGG Consensus sequence: CCTKGTGG

Best Matches for Motif ID 21 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0

Alignment:
HGDHVHKGACCACCCGGBGBGDB
---------CCACYAGG------

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 8
Similarity score: 0.00212209

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
----CCTKGTGG----------

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH


Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.00654113

Alignment:
CVHBSCGGGTGGTCMHVHHCDH
----CCTKGTGG----------

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH


Motif ID: UP00047
Motif name: Zbtb7b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.00890824

Alignment:
BDDRVGACCACCHBDVB
-------CCACYAGG--

Original motif Reverse complement motif
Consensus sequence: BDDRVGACCACCHBDVB Consensus sequence: BBDVHGGTGGTCBKDDB


Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0167011

Alignment:
DVHCCTGCTGBGDDB
---CCTKGTGG----

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB


Dataset #: 1 Motif ID: 22 Motif name: Motif 22

Original motif Reverse complement motif
Consensus sequence: CAGATYCC Consensus sequence: GGKATCTG

Best Matches for Motif ID 22 (Highest to Lowest)

Motif ID: UP00232
Motif name: Dobox4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0

Alignment:
DAWKGGGTATCTAWHWH
-----GGKATCTG----

Original motif Reverse complement motif
Consensus sequence: HWHWTAGATACCCYWTD Consensus sequence: DAWKGGGTATCTAWHWH


Motif ID: UP00159
Motif name: Six2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0241128

Alignment:
DAKRGGGTATCACDWHT
-----GGKATCTG----

Original motif Reverse complement motif
Consensus sequence: DAKRGGGTATCACDWHT Consensus sequence: AHWDGTGATACCCMRTD


Motif ID: UP00388
Motif name: Six6_2267.4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0250604

Alignment:
DATRGGGTATCAHDWHT
-----GGKATCTG----

Original motif Reverse complement motif
Consensus sequence: DATRGGGTATCAHDWHT Consensus sequence: AHWDHTGATACCCKATD


Motif ID: UP00195
Motif name: Six3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0259075

Alignment:
DATRGGGTATCAHHWHT
-----GGKATCTG----

Original motif Reverse complement motif
Consensus sequence: DATRGGGTATCAHHWHT Consensus sequence: AHWHDTGATACCCKATH


Motif ID: UP00192
Motif name: Six1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0264035

Alignment:
DHDRGGGTATCAHDHBT
-----GGKATCTG----

Original motif Reverse complement motif
Consensus sequence: DHDRGGGTATCAHDHBT Consensus sequence: AVHDHTGATACCCMDHH


Dataset #: 1 Motif ID: 23 Motif name: Motif 23

Original motif Reverse complement motif
Consensus sequence: GASAGAGA Consensus sequence: TCTCTSTC

Best Matches for Motif ID 23 (Highest to Lowest)

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0

Alignment:
HBHDVHDTCTTATCTHTDDHDV
----------TCTCTSTC----

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00040
Motif name: Irf5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.00356941

Alignment:
BHDAHCGAGARTHBV
--GASAGAGA-----

Original motif Reverse complement motif
Consensus sequence: BHDAHCGAGARTHBV Consensus sequence: VBHAKTCTCGHTHHV


Motif ID: UP00258
Motif name: Tgif2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0059307

Alignment:
AABBAGCTGTCAAWVV
---TCTCTSTC-----

Original motif Reverse complement motif
Consensus sequence: AABBAGCTGTCAAWVV Consensus sequence: VBWTTGACAGCTVBTT


Motif ID: UP00080
Motif name: Gata5_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.00994332

Alignment:
VVHHWGATATCTMHBBV
-------TCTCTSTC--

Original motif Reverse complement motif
Consensus sequence: VVBHRAGATATCWDHBB Consensus sequence: VVHHWGATATCTMHBBV


Motif ID: UP00186
Motif name: Meis1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0114008

Alignment:
WAVBASCTGTCAAWVH
---TCTCTSTC-----

Original motif Reverse complement motif
Consensus sequence: WAVBASCTGTCAAWVH Consensus sequence: DBWTTGACAGSTBVTW


Dataset #: 1 Motif ID: 24 Motif name: Motif 24

Original motif Reverse complement motif
Consensus sequence: TGTGGGTG Consensus sequence: CACCCACA

Best Matches for Motif ID 24 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 12
Number of overlap: 8
Similarity score: 0

Alignment:
ABBBBVVRGACCACCCACRDBBM
-----------CACCCACA----

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT


Motif ID: UP00070
Motif name: Gcm1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.00199912

Alignment:
DHDVATGCGGGTHVVH
-----TGTGGGTG---

Original motif Reverse complement motif
Consensus sequence: HVVHACCCGCATVDHD Consensus sequence: DHDVATGCGGGTHVVH


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.00682225

Alignment:
MHHHWHYTMCCHCCCACVAABVH
----------CACCCACA-----

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 11
Number of overlap: 8
Similarity score: 0.0105432

Alignment:
DTVBDDRGACCACCCAGDWDGBH
----------CACCCACA-----

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH


Motif ID: UP00021
Motif name: Zfp281_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.011455

Alignment:
DKKWDACCCCCAHTDDV
----CACCCACA-----

Original motif Reverse complement motif
Consensus sequence: DKKWDACCCCCAHTDDV Consensus sequence: VDDAHTGGGGGTHWYYD


Dataset #: 1 Motif ID: 25 Motif name: Motif 25

Original motif Reverse complement motif
Consensus sequence: CTGRGTTC Consensus sequence: GAACKCAG

Best Matches for Motif ID 25 (Highest to Lowest)

Motif ID: UP00019
Motif name: Zbtb12_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 8
Similarity score: 0.015191

Alignment:
BDHRBGTTCTAGATCVB
-CTGRGTTC--------

Original motif Reverse complement motif
Consensus sequence: BDHRBGTTCTAGATCVB Consensus sequence: BBGATCTAGAACBKHDB


Motif ID: UP00006
Motif name: Zic3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.0235944

Alignment:
DDDCACAGCAKGHVD
GAACKCAG-------

Original motif Reverse complement motif
Consensus sequence: DDDCACAGCAKGHVD Consensus sequence: DVHCYTGCTGTGHDH


Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.0252114

Alignment:
BHDCVCAGCAGGHVD
GAACKCAG-------

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB


Motif ID: UP00066
Motif name: Hnf4a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0255154

Alignment:
BDBVMGGGGTCAABHDV
---CTGRGTTC------

Original motif Reverse complement motif
Consensus sequence: BDBVMGGGGTCAABHDV Consensus sequence: BHHVTTGACCCCYVVDB


Motif ID: UP00148
Motif name: Hdx
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0260414

Alignment:
BDBDHTGATTTCDHYDD
----CTGRGTTC-----

Original motif Reverse complement motif
Consensus sequence: DDKDHGAAATCAHHBHV Consensus sequence: BDBDHTGATTTCDHYDD


Dataset #: 1 Motif ID: 26 Motif name: Motif 26

Original motif Reverse complement motif
Consensus sequence: CAGAGGAY Consensus sequence: KTCCTCTG

Best Matches for Motif ID 26 (Highest to Lowest)

Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0

Alignment:
HVDDVCAGATGKYHBBV
-----CAGAGGAY----

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH


Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.00361871

Alignment:
DDDYCCTTTGATCTDDV
--KTCCTCTG-------

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD


Motif ID: UP00083
Motif name: Tcf7l2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.00571944

Alignment:
DDDYCCTTTGATSTDDV
--KTCCTCTG-------

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATSTDDV Consensus sequence: BDDASATCAAAGGMDDD


Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.00988532

Alignment:
HHBTMCTTTGTTMDDVH
--KTCCTCTG-------

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH


Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0118578

Alignment:
HHBBMCTTTGTTHDDBH
--KTCCTCTG-------

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH


Dataset #: 1 Motif ID: 27 Motif name: Motif 27

Original motif Reverse complement motif
Consensus sequence: CSGCCGCC Consensus sequence: GGCGGCSG

Best Matches for Motif ID 27 (Highest to Lowest)

Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.012469

Alignment:
HCCGCCCCCGCAHB
-CSGCCGCC-----

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH


Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.012605

Alignment:
BDHHMCGCCCCCTHVBB
----CSGCCGCC-----

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.024557

Alignment:
TCDAMVBGACGCMAKDDDVBBD
-----CSGCCGCC---------

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD


Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0251911

Alignment:
DHHBCCCCGCCAHHBHB
---CSGCCGCC------

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD


Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.026934

Alignment:
DBCCCCCCCCCCMYC
----CSGCCGCC---

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD


Dataset #: 1 Motif ID: 28 Motif name: Motif 28

Original motif Reverse complement motif
Consensus sequence: CTTCCTG Consensus sequence: CAGGAAG

Best Matches for Motif ID 28 (Highest to Lowest)

Motif ID: UP00413
Motif name: Elf4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0

Alignment:
DBBHACTTCCGGKWTH
-----CTTCCTG----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGKWTH Consensus sequence: HAWYCCGGAAGTHBBD


Motif ID: UP00404
Motif name: Elf2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.00352958

Alignment:
DBBHACTTCCGGDWDB
-----CTTCCTG----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGDWDB Consensus sequence: BDWDCCGGAAGTHBBD


Motif ID: UP00013
Motif name: Gabpa_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00394394

Alignment:
HVHHACCGGAAGTDHHV
-----CAGGAAG-----

Original motif Reverse complement motif
Consensus sequence: HVHHACCGGAAGTDHHV Consensus sequence: BHHHACTTCCGGTHHBD


Motif ID: UP00420
Motif name: Elk3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00419952

Alignment:
DVBBACCGGAAGYDVVV
-----CAGGAAG-----

Original motif Reverse complement motif
Consensus sequence: DVBBACCGGAAGYDVVV Consensus sequence: VBVDMCTTCCGGTVBVD


Motif ID: UP00410
Motif name: Elk1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.006051

Alignment:
VVHBACCGGAAGTDBHD
-----CAGGAAG-----

Original motif Reverse complement motif
Consensus sequence: VVHBACCGGAAGTDBHD Consensus sequence: DHBDACTTCCGGTVHVB


Dataset #: 1 Motif ID: 29 Motif name: Motif 29

Original motif Reverse complement motif
Consensus sequence: CATTTCY Consensus sequence: MGAAATG

Best Matches for Motif ID 29 (Highest to Lowest)

Motif ID: UP00411
Motif name: Erg
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0

Alignment:
VBBVAYTTCCGGTDDB
---CATTTCY------

Original motif Reverse complement motif
Consensus sequence: VBBVAYTTCCGGTDDB Consensus sequence: BDDACCGGAAKTVBVB


Motif ID: UP00424
Motif name: Gm4881
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 3.61876e-06

Alignment:
VBBHAYTTCCGGTDDD
---CATTTCY------

Original motif Reverse complement motif
Consensus sequence: VBBHAYTTCCGGTDDD Consensus sequence: DHDACCGGAAMTHBVB


Motif ID: UP00148
Motif name: Hdx
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.000285971

Alignment:
DDKDHGAAATCAHHBHV
----MGAAATG------

Original motif Reverse complement motif
Consensus sequence: DDKDHGAAATCAHHBHV Consensus sequence: BDBDHTGATTTCDHYDD


Motif ID: UP00418
Motif name: Etv6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.00137994

Alignment:
DVHBTACTTCCGGHTHB
----CATTTCY------

Original motif Reverse complement motif
Consensus sequence: DVHBTACTTCCGGHTHB Consensus sequence: BHAHCCGGAAGTABDVD


Motif ID: UP00422
Motif name: Etv3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.00221043

Alignment:
VBBHAYTTCCGGTHDH
---CATTTCY------

Original motif Reverse complement motif
Consensus sequence: VBBHAYTTCCGGTHDH Consensus sequence: DHHACCGGAAKTHBBB


Dataset #: 1 Motif ID: 30 Motif name: Motif 30

Original motif Reverse complement motif
Consensus sequence: CWGCAGC Consensus sequence: GCTGCWG

Best Matches for Motif ID 30 (Highest to Lowest)

Motif ID: UP00052
Motif name: Osr2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0

Alignment:
HHHHGCTACKGTHVHH
----GCTGCWG-----

Original motif Reverse complement motif
Consensus sequence: HHVHACRGTAGCHHHD Consensus sequence: HHHHGCTACKGTHVHH


Motif ID: UP00027
Motif name: Osr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00152865

Alignment:
DHBHGCTACKGTHDHH
----GCTGCWG-----

Original motif Reverse complement motif
Consensus sequence: HHDHACRGTAGCHVHD Consensus sequence: DHBHGCTACKGTHDHH


Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 7
Similarity score: 0.00352181

Alignment:
HHDVVGCAGCTGVBKVB
---CWGCAGC-------

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB


Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0201867

Alignment:
DVHCCTGCTGBGDDB
---GCTGCWG-----

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB


Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0241363

Alignment:
HHDCVCAGCAKGVVD
-----CWGCAGC---

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD


Dataset #: 1 Motif ID: 31 Motif name: Motif 31

Original motif Reverse complement motif
Consensus sequence: CATGYACA Consensus sequence: TGTKCATG

Best Matches for Motif ID 31 (Highest to Lowest)

Motif ID: UP00150
Motif name: Irx6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00505399

Alignment:
HAHDTACATGTAVDWHT
------CATGYACA---

Original motif Reverse complement motif
Consensus sequence: HAHDTACATGTAVDWHT Consensus sequence: AHWDBTACATGTADHTH


Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.00507655

Alignment:
HDYTTGCACACGDHBH
--CATGYACA------

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH


Motif ID: UP00223
Motif name: Irx3_2226.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.00836655

Alignment:
DHDWBTACATGTAHDDD
-------CATGYACA--

Original motif Reverse complement motif
Consensus sequence: DDDHTACATGTAVWDHD Consensus sequence: DHDWBTACATGTAHDDD


Motif ID: UP00179
Motif name: Pou2f3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.00847056

Alignment:
BHDTATGCAAATBHDV
---CATGYACA-----

Original motif Reverse complement motif
Consensus sequence: BHDTATGCAAATBHDV Consensus sequence: BHHVATTTGCATAHHV


Motif ID: UP00191
Motif name: Pou2f2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.00973489

Alignment:
BHDTATGCAAATDHDV
---CATGYACA-----

Original motif Reverse complement motif
Consensus sequence: BHDTATGCAAATDHDV Consensus sequence: BHHDATTTGCATAHHV


Dataset #: 1 Motif ID: 32 Motif name: Motif 32

Original motif Reverse complement motif
Consensus sequence: KAATAAA Consensus sequence: TTTATTY

Best Matches for Motif ID 32 (Highest to Lowest)

Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0

Alignment:
HDHYYAATAAAAHHHH
----KAATAAA-----

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD


Motif ID: UP00133
Motif name: Cdx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.000531578

Alignment:
HRHTTTTATYMCCVBD
----TTTATTY-----

Original motif Reverse complement motif
Consensus sequence: DVVGGYMATAAAAHKH Consensus sequence: HRHTTTTATYMCCVBD


Motif ID: UP00134
Motif name: Hoxb13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00373425

Alignment:
VRHCCAATAAAAWHHV
----KAATAAA-----

Original motif Reverse complement motif
Consensus sequence: VRHCCAATAAAAWHHV Consensus sequence: VDHWTTTTATTGGDKB


Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 7
Similarity score: 0.00617561

Alignment:
HDDDATTTTATTKVRDB
------TTTATTY----

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB


Motif ID: UP00217
Motif name: Hoxa10
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00873461

Alignment:
DHBGYAATAAAATDHW
----KAATAAA-----

Original motif Reverse complement motif
Consensus sequence: DHBGYAATAAAATDHW Consensus sequence: WDDATTTTATTMCBHD


Dataset #: 1 Motif ID: 33 Motif name: Motif 33

Original motif Reverse complement motif
Consensus sequence: CTGGCTWC Consensus sequence: GWAGCCAG

Best Matches for Motif ID 33 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0

Alignment:
TCDAMVBGACGCMAKDDDVBBD
-------GWAGCCAG-------

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD


Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.00527751

Alignment:
DMTWDGTCAGCADWTTH
--GWAGCCAG-------

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH


Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0073813

Alignment:
HDHDDCCAGACABBHVH
-GWAGCCAG--------

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD


Motif ID: UP00052
Motif name: Osr2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.00888762

Alignment:
HHVHACRGTAGCHHHD
-------GWAGCCAG-

Original motif Reverse complement motif
Consensus sequence: HHVHACRGTAGCHHHD Consensus sequence: HHHHGCTACKGTHVHH


Motif ID: UP00027
Motif name: Osr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.00951832

Alignment:
HHDHACRGTAGCHVHD
-------GWAGCCAG-

Original motif Reverse complement motif
Consensus sequence: HHDHACRGTAGCHVHD Consensus sequence: DHBHGCTACKGTHDHH


Dataset #: 1 Motif ID: 34 Motif name: Motif 34

Original motif Reverse complement motif
Consensus sequence: TGKCCACA Consensus sequence: TGTGGYCA

Best Matches for Motif ID 34 (Highest to Lowest)

Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0

Alignment:
HDHTMTGTGCACADVHD
-----TGKCCACA----

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD


Motif ID: UP00042
Motif name: Gm397_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.00132554

Alignment:
HHRTATGTGCACATHHD
-----TGKCCACA----

Original motif Reverse complement motif
Consensus sequence: HHDATGTGCACATAMDH Consensus sequence: HHRTATGTGCACATHHD


Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0066252

Alignment:
DBCDWHCTGGGTGGTCMDHBBAH
---------TGTGGYCA------

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH


Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 8
Similarity score: 0.00683926

Alignment:
BTBVTCVTGGGTGGTCMVVDVBB
---------TGTGGYCA------

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB


Motif ID: UP00053
Motif name: Rxra_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.00716059

Alignment:
VHBHDGGGGTCAHBHBD
----TGTGGYCA-----

Original motif Reverse complement motif
Consensus sequence: DBHBDTGACCCCDHVHB Consensus sequence: VHBHDGGGGTCAHBHBD


Dataset #: 1 Motif ID: 35 Motif name: Motif 35

Original motif Reverse complement motif
Consensus sequence: ACAACCAY Consensus sequence: KTGGTTGT

Best Matches for Motif ID 35 (Highest to Lowest)

Motif ID: UP00047
Motif name: Zbtb7b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0

Alignment:
BDDRVGACCACCHBDVB
------ACAACCAY---

Original motif Reverse complement motif
Consensus sequence: BDDRVGACCACCHBDVB Consensus sequence: BBDVHGGTGGTCBKDDB


Motif ID: UP00227
Motif name: Duxl
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.00363031

Alignment:
VHVVGTTGATTGGGTMK
-----KTGGTTGT----

Original motif Reverse complement motif
Consensus sequence: YRACCCAATCAACVVHV Consensus sequence: VHVVGTTGATTGGGTMK


Motif ID: UP00166
Motif name: Barhl1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.00780833

Alignment:
DDVKTAATTGGTTDTH
-------KTGGTTGT-

Original motif Reverse complement motif
Consensus sequence: HAHAACCAATTARBDH Consensus sequence: DDVKTAATTGGTTDTH


Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 8
Similarity score: 0.0118241

Alignment:
YBVDMGTGGGTGGTCKVVBVBBT
------KTGGTTGT---------

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT


Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0118666

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
-----KTGGTTGT---------

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH


Dataset #: 1 Motif ID: 36 Motif name: Motif 36

Original motif Reverse complement motif
Consensus sequence: TCCTGGRA Consensus sequence: TMCCAGGA

Best Matches for Motif ID 36 (Highest to Lowest)

Motif ID: UP00043
Motif name: Bcl6b_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0

Alignment:
VHHATTCCTYGAAAGD
-----TCCTGGRA---

Original motif Reverse complement motif
Consensus sequence: DCTTTCKAGGAATHHV Consensus sequence: VHHATTCCTYGAAAGD


Motif ID: UP00038
Motif name: Spdef_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.00573581

Alignment:
VDWYTAGGATGTHVDH
-TMCCAGGA-------

Original motif Reverse complement motif
Consensus sequence: DDBHACATCCTAKWDV Consensus sequence: VDWYTAGGATGTHVDH


Motif ID: UP00413
Motif name: Elf4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.00675491

Alignment:
HAWYCCGGAAGTHBBD
--TCCTGGRA------

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGKWTH Consensus sequence: HAWYCCGGAAGTHBBD


Motif ID: UP00033
Motif name: Zfp410_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0109341

Alignment:
BDDYYCATCCCATDDBD
-------TMCCAGGA--

Original motif Reverse complement motif
Consensus sequence: DVDDATGGGATGKMDDV Consensus sequence: BDDYYCATCCCATDDBD


Motif ID: UP00410
Motif name: Elk1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.012227

Alignment:
DHBDACTTCCGGTVHVB
-------TCCTGGRA--

Original motif Reverse complement motif
Consensus sequence: VVHBACCGGAAGTDBHD Consensus sequence: DHBDACTTCCGGTVHVB


Dataset #: 1 Motif ID: 37 Motif name: Motif 37

Original motif Reverse complement motif
Consensus sequence: CTGAGCYA Consensus sequence: TKGCTCAG

Best Matches for Motif ID 37 (Highest to Lowest)

Motif ID: UP00098
Motif name: Rfx3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0

Alignment:
HHHHDVVGTTGCTAHGGDHBAHH
--------TKGCTCAG-------

Original motif Reverse complement motif
Consensus sequence: HDTBHHCCHTAGCAACVVDHHHH Consensus sequence: HHHHDVVGTTGCTAHGGDHBAHH


Motif ID: UP00103
Motif name: Jundm2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.00321157

Alignment:
HDDKTGASTCAKHRDB
----TKGCTCAG----

Original motif Reverse complement motif
Consensus sequence: VDKDRTGASTCAYHDH Consensus sequence: HDDKTGASTCAKHRDB


Motif ID: UP00076
Motif name: Rfxdc2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.00414765

Alignment:
DVSGTTGCTAHGVBB
----TKGCTCAG---

Original motif Reverse complement motif
Consensus sequence: BBVCHTAGCAACSVD Consensus sequence: DVSGTTGCTAHGVBB


Motif ID: UP00056
Motif name: Rfx4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00415736

Alignment:
DVSGTTGCTAHGGHV
----TKGCTCAG---

Original motif Reverse complement motif
Consensus sequence: BHCCHTAGCAACSVD Consensus sequence: DVSGTTGCTAHGGHV


Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0106486

Alignment:
DMTWDGTCAGCADWTTH
--TKGCTCAG-------

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH


Dataset #: 1 Motif ID: 38 Motif name: Motif 38

Original motif Reverse complement motif
Consensus sequence: GAGTTACA Consensus sequence: TGTAACTC

Best Matches for Motif ID 38 (Highest to Lowest)

Motif ID: UP00056
Motif name: Rfx4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0

Alignment:
HHBCHTRGWTACVVH
-----GAGTTACA--

Original motif Reverse complement motif
Consensus sequence: HHBCHTRGWTACVVH Consensus sequence: HVVGTAWCKADGBHH


Motif ID: UP00103
Motif name: Jundm2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.00296274

Alignment:
VDKDRTGASTCAYHDH
------GAGTTACA--

Original motif Reverse complement motif
Consensus sequence: VDKDRTGASTCAYHDH Consensus sequence: HDDKTGASTCAKHRDB


Motif ID: UP00193
Motif name: Rhox11_1765.2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.00944938

Alignment:
AVDVCGCTGTWAWDVVW
-------TGTAACTC--

Original motif Reverse complement motif
Consensus sequence: AVDVCGCTGTWAWDVVW Consensus sequence: WVVHWTWACAGCGBHBT


Motif ID: UP00205
Motif name: Pknox2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.00964683

Alignment:
HAVSRSCTGTCAATHB
-------TGTAACTC-

Original motif Reverse complement motif
Consensus sequence: HAVSRSCTGTCAATHB Consensus sequence: VHATTGACAGSKSVTH


Motif ID: UP00236
Motif name: Irx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.00974779

Alignment:
WVWDDTACATGTADDDW
-GAGTTACA--------

Original motif Reverse complement motif
Consensus sequence: WDDDTACATGTADDWBW Consensus sequence: WVWDDTACATGTADDDW


Dataset #: 1 Motif ID: 39 Motif name: Motif 39

Original motif Reverse complement motif
Consensus sequence: BAGAAA Consensus sequence: TTTCTB

Best Matches for Motif ID 39 (Highest to Lowest)

Motif ID: UP00040
Motif name: Irf5_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0

Alignment:
BDKGTTTCGKTWDDD
----TTTCTB-----

Original motif Reverse complement motif
Consensus sequence: DDDWAYCGAAACYDV Consensus sequence: BDKGTTTCGKTWDDD


Motif ID: UP00018
Motif name: Irf4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.00208221

Alignment:
VDDAYCGAAACYDVA
----BAGAAA-----

Original motif Reverse complement motif
Consensus sequence: VDDAYCGAAACYDVA Consensus sequence: TBDKGTTTCGMTDHV


Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.00450619

Alignment:
BDHDDADAGATAAGADHBDHVD
------BAGAAA----------

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Motif ID: UP00074
Motif name: Isgf3g_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.00517682

Alignment:
TDAGTTTCGWTTKDV
----TTTCTB-----

Original motif Reverse complement motif
Consensus sequence: VDRAAWCGAAACTDA Consensus sequence: TDAGTTTCGWTTKDV


Motif ID: UP00011
Motif name: Irf6_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.00721031

Alignment:
HDDAHCGAAACYAVDDD
----BAGAAA-------

Original motif Reverse complement motif
Consensus sequence: HDDAHCGAAACYAVDDD Consensus sequence: DHDBTKGTTTCGHTHDD


Dataset #: 1 Motif ID: 40 Motif name: Motif 40

Original motif Reverse complement motif
Consensus sequence: ARTCCCAG Consensus sequence: CTGGGAMT

Best Matches for Motif ID 40 (Highest to Lowest)

Motif ID: UP00216
Motif name: Obox1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0

Alignment:
DHDGTTAATCCCCKTDD
------ARTCCCAG---

Original motif Reverse complement motif
Consensus sequence: DDARGGGGATTAACDHH Consensus sequence: DHDGTTAATCCCCKTDD


Motif ID: UP00229
Motif name: Otx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.00997246

Alignment:
VHHWATTAATCCCMDHH
-------ARTCCCAG--

Original motif Reverse complement motif
Consensus sequence: DDDRGGGATTAATWHHB Consensus sequence: VHHWATTAATCCCMDHH


Motif ID: UP00160
Motif name: Obox3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0101137

Alignment:
HHWGTTAATCCCCCBBH
------ARTCCCAG---

Original motif Reverse complement motif
Consensus sequence: HBVGGGGGATTAACWHH Consensus sequence: HHWGTTAATCCCCCBBH


Motif ID: UP00033
Motif name: Zfp410_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0101427

Alignment:
BDDYYCATCCCATDDBD
-----ARTCCCAG----

Original motif Reverse complement motif
Consensus sequence: DVDDATGGGATGKMDDV Consensus sequence: BDDYYCATCCCATDDBD


Motif ID: UP00208
Motif name: Obox5_2284.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0112114

Alignment:
DHHAHTTAATCCCKVDH
-------ARTCCCAG--

Original motif Reverse complement motif
Consensus sequence: HDVRGGGATTAAHTHHH Consensus sequence: DHHAHTTAATCCCKVDH


Dataset #: 1 Motif ID: 41 Motif name: Motif 41

Original motif Reverse complement motif
Consensus sequence: CCTGCTGK Consensus sequence: YCAGCAGG

Best Matches for Motif ID 41 (Highest to Lowest)

Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0

Alignment:
DVHCCTGCTGBGDDB
---CCTGCTGK----

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB


Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0043517

Alignment:
DVBCYTGCTGBGDDD
---CCTGCTGK----

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD


Motif ID: UP00006
Motif name: Zic3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.00761363

Alignment:
DVHCYTGCTGTGHDH
---CCTGCTGK----

Original motif Reverse complement motif
Consensus sequence: DDDCACAGCAKGHVD Consensus sequence: DVHCYTGCTGTGHDH


Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0402767

Alignment:
DMTWDGTCAGCADWTTH
------YCAGCAGG---

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH


Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0490068

Alignment:
VBHHVCAGGTGCDVDHD
-YCAGCAGG--------

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB


Dataset #: 1 Motif ID: 42 Motif name: Motif 42

Original motif Reverse complement motif
Consensus sequence: CGCGCSG Consensus sequence: CSGCGCG

Best Matches for Motif ID 42 (Highest to Lowest)

Motif ID: UP00003
Motif name: E2F3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 7
Similarity score: 0

Alignment:
WHSGCGCGCCHTDHB
-CSGCGCG-------

Original motif Reverse complement motif
Consensus sequence: VHDADGGCGCGCSHW Consensus sequence: WHSGCGCGCCHTDHB


Motif ID: UP00001
Motif name: E2F2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.000129734

Alignment:
HHVGCGCGCCKTDHB
----CGCGCSG----

Original motif Reverse complement motif
Consensus sequence: VHDARGGCGCGCVHH Consensus sequence: HHVGCGCGCCKTDHB


Motif ID: UP00065
Motif name: Zfp161_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.0145336

Alignment:
DMMDGMGCGCGCGCHD
-------CGCGCSG--

Original motif Reverse complement motif
Consensus sequence: DDGCGCGCGCRCHYRD Consensus sequence: DMMDGMGCGCGCGCHD


Motif ID: UP00065
Motif name: Zfp161_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.016879

Alignment:
VVGCVMTGCGCGKC
-----CSGCGCG--

Original motif Reverse complement motif
Consensus sequence: GYCGCGCARBGCVB Consensus sequence: VVGCVMTGCGCGKC


Motif ID: UP00526
Motif name: Foxn1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.0219936

Alignment:
HDWHMHGACGCGCGTRBVVBHW
-------CSGCGCG--------

Original motif Reverse complement motif
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Consensus sequence: HDWHMHGACGCGCGTRBVVBHW


Dataset #: 1 Motif ID: 43 Motif name: Motif 43

Original motif Reverse complement motif
Consensus sequence: ACATYTA Consensus sequence: TAMATGT

Best Matches for Motif ID 43 (Highest to Lowest)

Motif ID: UP00236
Motif name: Irx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0

Alignment:
WVWDDTACATGTADDDW
-----TAMATGT-----

Original motif Reverse complement motif
Consensus sequence: WDDDTACATGTADDWBW Consensus sequence: WVWDDTACATGTADDDW


Motif ID: UP00150
Motif name: Irx6
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 3.6652e-05

Alignment:
AHWDBTACATGTADHTH
-----TAMATGT-----

Original motif Reverse complement motif
Consensus sequence: HAHDTACATGTAVDWHT Consensus sequence: AHWDBTACATGTADHTH


Motif ID: UP00223
Motif name: Irx3_2226.1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.000501187

Alignment:
DHDWBTACATGTAHDDD
-----TAMATGT-----

Original motif Reverse complement motif
Consensus sequence: DDDHTACATGTAVWDHD Consensus sequence: DHDWBTACATGTAHDDD


Motif ID: UP00223
Motif name: Irx3_0920.1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00389424

Alignment:
DDWWBTACATGTADDDD
-----TAMATGT-----

Original motif Reverse complement motif
Consensus sequence: DDDDTACATGTAVWWHD Consensus sequence: DDWWBTACATGTADDDD


Motif ID: UP00250
Motif name: Irx5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.0071841

Alignment:
WVTDHWACATGTWHDDD
-----TAMATGT-----

Original motif Reverse complement motif
Consensus sequence: DDDHWACATGTWHDABW Consensus sequence: WVTDHWACATGTWHDDD


Dataset #: 1 Motif ID: 44 Motif name: Motif 44

Original motif Reverse complement motif
Consensus sequence: GDAAACA Consensus sequence: TGTTTDC

Best Matches for Motif ID 44 (Highest to Lowest)

Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0

Alignment:
DDAATGTAAACAAAVVB
-----GDAAACA-----

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD


Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.00709733

Alignment:
BDVTTTKTTTACWTWHH
-----TGTTTDC-----

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH


Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00723594

Alignment:
DWAATRTAAACAAWVVB
-----GDAAACA-----

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD


Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.0079365

Alignment:
HDHADGTAAACAAAVVH
-----GDAAACA-----

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH


Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0.0162324

Alignment:
HDHRTAAACAAAHDDD
---GDAAACA------

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH


Dataset #: 1 Motif ID: 45 Motif name: Motif 45

Original motif Reverse complement motif
Consensus sequence: GSAGAGA Consensus sequence: TCTCTSC

Best Matches for Motif ID 45 (Highest to Lowest)

Motif ID: UP00031
Motif name: Zbtb3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0

Alignment:
DDBBBCACTGCABTBBB
----TCTCTSC------

Original motif Reverse complement motif
Consensus sequence: DDBBBCACTGCABTBBB Consensus sequence: BBBAVTGCAGTGBBVDD


Motif ID: UP00018
Motif name: Irf4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00147657

Alignment:
BHHWCCGAGAMTVVB
---GSAGAGA-----

Original motif Reverse complement motif
Consensus sequence: VVBAYTCTCGGWHDB Consensus sequence: BHHWCCGAGAMTVVB


Motif ID: UP00040
Motif name: Irf5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00225471

Alignment:
BHDAHCGAGARTHBV
---GSAGAGA-----

Original motif Reverse complement motif
Consensus sequence: BHDAHCGAGARTHBV Consensus sequence: VBHAKTCTCGHTHHV


Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.00336112

Alignment:
HDHTMTGTGCACADVHD
---TCTCTSC-------

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD


Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.00351001

Alignment:
BDHDDADAGATAAGADHBDHVD
-----GSAGAGA----------

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV


Dataset #: 2 Motif ID: 46 Motif name: Motif 46

Original motif Reverse complement motif
Consensus sequence: AGRKGGCR Consensus sequence: KGCCYKCT

Best Matches for Motif ID 46 (Highest to Lowest)

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0

Alignment:
BVVHAGGGGGCGRDHHB
----AGRKGGCR-----

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00079
Motif name: Esrra_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0154192

Alignment:
VKBBAGGGGTCAHDBBH
----AGRKGGCR-----

Original motif Reverse complement motif
Consensus sequence: VKBBAGGGGTCAHDBBH Consensus sequence: DBBHHTGACCCCTBBYV


Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0160089

Alignment:
VHTGCGGGGGCGGH
----AGRKGGCR--

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH


Motif ID: UP00010
Motif name: Tcfap2b_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0241611

Alignment:
HTGCCMTVKGGCMD
-KGCCYKCT-----

Original motif Reverse complement motif
Consensus sequence: DYGCCYBARGGCAH Consensus sequence: HTGCCMTVKGGCMD


Motif ID: UP00070
Motif name: Gcm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0267457

Alignment:
DDBVHATAGGGGRBRMB
-------AGRKGGCR--

Original motif Reverse complement motif
Consensus sequence: DDBVHATAGGGGRBRMB Consensus sequence: BYMBKCCCCTATDVBHD


Dataset #: 2 Motif ID: 47 Motif name: Motif 47

Original motif Reverse complement motif
Consensus sequence: CAGYDCC Consensus sequence: GGDKCTG

Best Matches for Motif ID 47 (Highest to Lowest)

Motif ID: UP00205
Motif name: Pknox2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 7
Similarity score: 0.0213831

Alignment:
HAVSRSCTGTCAATHB
--GGDKCTG-------

Original motif Reverse complement motif
Consensus sequence: HAVSRSCTGTCAATHB Consensus sequence: VHATTGACAGSKSVTH


Motif ID: UP00122
Motif name: Tgif1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0245571

Alignment:
DABWWTGACAGCTVVBD
--------CAGYDCC--

Original motif Reverse complement motif
Consensus sequence: DABWWTGACAGCTVVBD Consensus sequence: DBVVAGCTGTCAWWVTH


Motif ID: UP00203
Motif name: Pknox1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0300471

Alignment:
VVWTTGACAGSTSBKD
-------CAGYDCC--

Original motif Reverse complement motif
Consensus sequence: DRVSASCTGTCAAWVV Consensus sequence: VVWTTGACAGSTSBKD


Motif ID: UP00258
Motif name: Tgif2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0300683

Alignment:
VBWTTGACAGCTVBTT
-------CAGYDCC--

Original motif Reverse complement motif
Consensus sequence: AABBAGCTGTCAAWVV Consensus sequence: VBWTTGACAGCTVBTT


Motif ID: UP00193
Motif name: Rhox11_2205.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 7
Similarity score: 0.0305033

Alignment:
WVVHWTWACAGCGHHVT
--------CAGYDCC--

Original motif Reverse complement motif
Consensus sequence: AVDHCGCTGTWAWDVVW Consensus sequence: WVVHWTWACAGCGHHVT


Dataset #: 2 Motif ID: 48 Motif name: Motif 48

Original motif Reverse complement motif
Consensus sequence: CCACYAGR Consensus sequence: MCTKGTGG

Best Matches for Motif ID 48 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0

Alignment:
HGDHVHKGACCACCCGGBGBGDB
---------CCACYAGR------

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 8
Similarity score: 0.000875703

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
----MCTKGTGG----------

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH


Motif ID: UP00047
Motif name: Zbtb7b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.00261558

Alignment:
BDDRVGACCACCHBDVB
-------CCACYAGR--

Original motif Reverse complement motif
Consensus sequence: BDDRVGACCACCHBDVB Consensus sequence: BBDVHGGTGGTCBKDDB


Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.00296024

Alignment:
CVHBSCGGGTGGTCMHVHHCDH
----MCTKGTGG----------

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH


Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0161251

Alignment:
VBHHVCAGGTGCDVDHD
----MCTKGTGG-----

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB


Dataset #: 2 Motif ID: 49 Motif name: Motif 49

Original motif Reverse complement motif
Consensus sequence: CTGGCCTC Consensus sequence: GAGGCCAG

Best Matches for Motif ID 49 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0

Alignment:
TCDAMVBGACGCMAKDDDVBBD
-------GAGGCCAG-------

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD


Motif ID: UP00079
Motif name: Esrra_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.00199504

Alignment:
DBBHHTGACCCCTBBYV
----CTGGCCTC-----

Original motif Reverse complement motif
Consensus sequence: VKBBAGGGGTCAHDBBH Consensus sequence: DBBHHTGACCCCTBBYV


Motif ID: UP00035
Motif name: Hic1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0108368

Alignment:
DDBHGGTTGGCATVBD
------CTGGCCTC--

Original motif Reverse complement motif
Consensus sequence: DBBATGCCAACCHVHH Consensus sequence: DDBHGGTTGGCATVBD


Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.0117596

Alignment:
DMTWDGTCAGCADWTTH
--GAGGCCAG-------

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH


Motif ID: UP00053
Motif name: Rxra_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0118075

Alignment:
VHBHDGGGGTCAHBHBD
-----GAGGCCAG----

Original motif Reverse complement motif
Consensus sequence: DBHBDTGACCCCDHVHB Consensus sequence: VHBHDGGGGTCAHBHBD


Dataset #: 2 Motif ID: 50 Motif name: Motif 50

Original motif Reverse complement motif
Consensus sequence: AGRAA Consensus sequence: TTMCT

Best Matches for Motif ID 50 (Highest to Lowest)

Motif ID: UP00043
Motif name: Bcl6b_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 5
Similarity score: 0

Alignment:
DCTTTCKAGGAATHHV
-------AGRAA----

Original motif Reverse complement motif
Consensus sequence: DCTTTCKAGGAATHHV Consensus sequence: VHHATTCCTYGAAAGD


Motif ID: UP00409
Motif name: Elf5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 5
Similarity score: 0.00150766

Alignment:
BWAHSMGGAAGTWD
-----AGRAA----

Original motif Reverse complement motif
Consensus sequence: BWAHSMGGAAGTWD Consensus sequence: DWACTTCCRSDTWV


Motif ID: UP00090
Motif name: Elf3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 5
Similarity score: 0.00378425

Alignment:
TDAMTTCCYYDTD
----TTMCT----

Original motif Reverse complement motif
Consensus sequence: DAHMMGGAARTDA Consensus sequence: TDAMTTCCYYDTD


Motif ID: UP00181
Motif name: Barx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 5
Similarity score: 0.00386973

Alignment:
WTHHMSKAATTMVKHY
---------TTMCT--

Original motif Reverse complement motif
Consensus sequence: MHRVYAATTRSYDHAW Consensus sequence: WTHHMSKAATTMVKHY


Motif ID: UP00085
Motif name: Sfpi1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 5
Similarity score: 0.00623266

Alignment:
BDAWGVGGAAGTDH
-----AGRAA----

Original motif Reverse complement motif
Consensus sequence: BDAWGVGGAAGTDH Consensus sequence: HDACTTCCBCWTDV


Dataset #: 2 Motif ID: 51 Motif name: Motif 51

Original motif Reverse complement motif
Consensus sequence: GAGTTACA Consensus sequence: TGTAACTC

Best Matches for Motif ID 51 (Highest to Lowest)

Motif ID: UP00103
Motif name: Jundm2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0

Alignment:
VDKDRTGASTCAYHDH
------GAGTTACA--

Original motif Reverse complement motif
Consensus sequence: VDKDRTGASTCAYHDH Consensus sequence: HDDKTGASTCAKHRDB


Motif ID: UP00193
Motif name: Rhox11_1765.2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.00122205

Alignment:
AVDVCGCTGTWAWDVVW
-------TGTAACTC--

Original motif Reverse complement motif
Consensus sequence: AVDVCGCTGTWAWDVVW Consensus sequence: WVVHWTWACAGCGBHBT


Motif ID: UP00205
Motif name: Pknox2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0014195

Alignment:
HAVSRSCTGTCAATHB
-------TGTAACTC-

Original motif Reverse complement motif
Consensus sequence: HAVSRSCTGTCAATHB Consensus sequence: VHATTGACAGSKSVTH


Motif ID: UP00236
Motif name: Irx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.00152046

Alignment:
WVWDDTACATGTADDDW
-GAGTTACA--------

Original motif Reverse complement motif
Consensus sequence: WDDDTACATGTADDWBW Consensus sequence: WVWDDTACATGTADDDW


Motif ID: UP00193
Motif name: Rhox11_2205.1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.00217941

Alignment:
AVDHCGCTGTWAWDVVW
-------TGTAACTC--

Original motif Reverse complement motif
Consensus sequence: AVDHCGCTGTWAWDVVW Consensus sequence: WVVHWTWACAGCGHHVT


Dataset #: 2 Motif ID: 52 Motif name: Motif 52

Original motif Reverse complement motif
Consensus sequence: AAATAAAW Consensus sequence: WTTTATTT

Best Matches for Motif ID 52 (Highest to Lowest)

Motif ID: UP00133
Motif name: Cdx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0

Alignment:
DVVGGYMATAAAAHKH
-----AAATAAAW---

Original motif Reverse complement motif
Consensus sequence: DVVGGYMATAAAAHKH Consensus sequence: HRHTTTTATYMCCVBD


Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.00105399

Alignment:
HDHYYAATAAAAHHHH
----AAATAAAW----

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD


Motif ID: UP00134
Motif name: Hoxb13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.00468315

Alignment:
VDHWTTTTATTGGDKB
----WTTTATTT----

Original motif Reverse complement motif
Consensus sequence: VRHCCAATAAAAWHHV Consensus sequence: VDHWTTTTATTGGDKB


Motif ID: UP00217
Motif name: Hoxa10
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.00632827

Alignment:
DHBGYAATAAAATDHW
----AAATAAAW----

Original motif Reverse complement motif
Consensus sequence: DHBGYAATAAAATDHW Consensus sequence: WDDATTTTATTMCBHD


Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.00650679

Alignment:
HDDDATTTTATTKVRDB
-----WTTTATTT----

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB


Dataset #: 2 Motif ID: 53 Motif name: Motif 53

Original motif Reverse complement motif
Consensus sequence: CAGATCCC Consensus sequence: GGGATCTG

Best Matches for Motif ID 53 (Highest to Lowest)

Motif ID: UP00232
Motif name: Dobox4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0

Alignment:
HWHWTAGATACCCYWTD
----CAGATCCC-----

Original motif Reverse complement motif
Consensus sequence: HWHWTAGATACCCYWTD Consensus sequence: DAWKGGGTATCTAWHWH


Motif ID: UP00033
Motif name: Zfp410_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0114177

Alignment:
DVDDATGGGATGKMDDV
------GGGATCTG---

Original motif Reverse complement motif
Consensus sequence: DVDDATGGGATGKMDDV Consensus sequence: BDDYYCATCCCATDDBD


Motif ID: UP00019
Motif name: Zbtb12_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0161888

Alignment:
BDHRBGTTCTAGATCVB
---GGGATCTG------

Original motif Reverse complement motif
Consensus sequence: BDHRBGTTCTAGATCVB Consensus sequence: BBGATCTAGAACBKHDB


Motif ID: UP00265
Motif name: Pitx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0173992

Alignment:
VGGGGGATTAGCDDBC
---GGGATCTG-----

Original motif Reverse complement motif
Consensus sequence: VGGGGGATTAGCDDBC Consensus sequence: GBHDGCTAATCCCCCB


Motif ID: UP00024
Motif name: Glis2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0190616

Alignment:
HHHVGACCCCCCVBRD
--CAGATCCC------

Original motif Reverse complement motif
Consensus sequence: HHHVGACCCCCCVBRD Consensus sequence: HKBBGGGGGGTCVHHH


Dataset #: 2 Motif ID: 54 Motif name: Motif 54

Original motif Reverse complement motif
Consensus sequence: ATTYY Consensus sequence: MKAAT

Best Matches for Motif ID 54 (Highest to Lowest)

Motif ID: UP00253
Motif name: Rax
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0

Alignment:
DBSBKMTAATTAKBGSW
-----MKAAT-------

Original motif Reverse complement motif
Consensus sequence: WSCVYTAATTARYBSVH Consensus sequence: DBSBKMTAATTAKBGSW


Motif ID: UP00163
Motif name: En2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.00258272

Alignment:
HHVBAMTAATTAKBDCW
-----MKAAT-------

Original motif Reverse complement motif
Consensus sequence: WGHVYTAATTARTBVHH Consensus sequence: HHVBAMTAATTAKBDCW


Motif ID: UP00178
Motif name: Og2x
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.00347324

Alignment:
BHDHBMKAATTMKVVCG
-----MKAAT-------

Original motif Reverse complement motif
Consensus sequence: CGVVYYAATTRRBHDHB Consensus sequence: BHDHBMKAATTMKVVCG


Motif ID: UP00108
Motif name: Alx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 5
Similarity score: 0.00511465

Alignment:
VHVAKMTAATTAKTHBW
-----MKAAT-------

Original motif Reverse complement motif
Consensus sequence: WVHAYTAATTARYTVHV Consensus sequence: VHVAKMTAATTAKTHBW


Motif ID: UP00139
Motif name: Nkx1-2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 5
Similarity score: 0.0054602

Alignment:
WGHAMTAATTAKKVBDH
----MKAAT--------

Original motif Reverse complement motif
Consensus sequence: DDBVRYTAATTARTDCW Consensus sequence: WGHAMTAATTAKKVBDH


Dataset #: 2 Motif ID: 55 Motif name: Motif 55

Original motif Reverse complement motif
Consensus sequence: GCTCACAA Consensus sequence: TTGTGAGC

Best Matches for Motif ID 55 (Highest to Lowest)

Motif ID: UP00026
Motif name: Zscan4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0

Alignment:
BHHHTTGTGTGCKHVD
----TTGTGAGC----

Original motif Reverse complement motif
Consensus sequence: HVHRGCACACAAHHHV Consensus sequence: BHHHTTGTGTGCKHVD


Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0097578

Alignment:
DVMVGCACACACKCVH
----GCTCACAA----

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD


Motif ID: UP00095
Motif name: Zfp691_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0133529

Alignment:
BDHVCAGTGCTCMBHDD
--------GCTCACAA-

Original motif Reverse complement motif
Consensus sequence: BDHVCAGTGCTCMBHDD Consensus sequence: DDHBYGAGCACTGBHHB


Motif ID: UP00258
Motif name: Tgif2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0172769

Alignment:
VBWTTGACAGCTVBTT
---TTGTGAGC-----

Original motif Reverse complement motif
Consensus sequence: AABBAGCTGTCAAWVV Consensus sequence: VBWTTGACAGCTVBTT


Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0197606

Alignment:
HAAWDTGCTGACDWARH
------GCTCACAA---

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH


Dataset #: 2 Motif ID: 56 Motif name: Motif 56

Original motif Reverse complement motif
Consensus sequence: CCACATGG Consensus sequence: CCATGTGG

Best Matches for Motif ID 56 (Highest to Lowest)

Motif ID: UP00010
Motif name: Tcfap2b_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0

Alignment:
HTGCCMTVKGGCMD
---CCATGTGG---

Original motif Reverse complement motif
Consensus sequence: DYGCCYBARGGCAH Consensus sequence: HTGCCMTVKGGCMD


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 8
Similarity score: 0.000569341

Alignment:
YDYBDHTMCACGTGGADDBMDGT
-------CCACATGG--------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0020225

Alignment:
DDASCACGTGBTBVDD
---CCACATGG-----

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD


Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.00356885

Alignment:
HVDDVCAGATGKYHBBV
----CCACATGG-----

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH


Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 11
Number of overlap: 8
Similarity score: 0.00437787

Alignment:
HTBVVVDGGACCACCCRGRDBG
----------CCACATGG----

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH


Dataset #: 2 Motif ID: 57 Motif name: Motif 57

Original motif Reverse complement motif
Consensus sequence: ACACACAY Consensus sequence: KTGTGTGT

Best Matches for Motif ID 57 (Highest to Lowest)

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0

Alignment:
HBGYGTGTGTGCVRVD
--KTGTGTGT------

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD


Motif ID: UP00026
Motif name: Zscan4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0175328

Alignment:
BHHHTTGTGTGCKHVD
------KTGTGTGT--

Original motif Reverse complement motif
Consensus sequence: HVHRGCACACAAHHHV Consensus sequence: BHHHTTGTGTGCKHVD


Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0353784

Alignment:
HDHRTAAACAAAHDDD
-----ACACACAY---

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH


Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0359654

Alignment:
DHVDTGTGCACAYAHDH
-------ACACACAY--

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD


Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0382549

Alignment:
DVVTTTGTTTACDTHDH
--KTGTGTGT-------

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH


Dataset #: 2 Motif ID: 58 Motif name: Motif 58

Original motif Reverse complement motif
Consensus sequence: TACATGCA Consensus sequence: TGCATGTA

Best Matches for Motif ID 58 (Highest to Lowest)

Motif ID: UP00150
Motif name: Irx6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0

Alignment:
AHWDBTACATGTADHTH
-----TACATGCA----

Original motif Reverse complement motif
Consensus sequence: HAHDTACATGTAVDWHT Consensus sequence: AHWDBTACATGTADHTH


Motif ID: UP00236
Motif name: Irx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.000109499

Alignment:
WVWDDTACATGTADDDW
-----TACATGCA----

Original motif Reverse complement motif
Consensus sequence: WDDDTACATGTADDWBW Consensus sequence: WVWDDTACATGTADDDW


Motif ID: UP00223
Motif name: Irx3_2226.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.000755361

Alignment:
DHDWBTACATGTAHDDD
-----TACATGCA----

Original motif Reverse complement motif
Consensus sequence: DDDHTACATGTAVWDHD Consensus sequence: DHDWBTACATGTAHDDD


Motif ID: UP00223
Motif name: Irx3_0920.1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.00254146

Alignment:
DDDDTACATGTAVWWHD
----TGCATGTA-----

Original motif Reverse complement motif
Consensus sequence: DDDDTACATGTAVWWHD Consensus sequence: DDWWBTACATGTADDDD


Motif ID: UP00250
Motif name: Irx5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0106901

Alignment:
WVTDHWACATGTWHDDD
-----TACATGCA----

Original motif Reverse complement motif
Consensus sequence: DDDHWACATGTWHDABW Consensus sequence: WVTDHWACATGTWHDDD


Dataset #: 2 Motif ID: 59 Motif name: Motif 59

Original motif Reverse complement motif
Consensus sequence: CCCCRCCC Consensus sequence: GGGKGGGG

Best Matches for Motif ID 59 (Highest to Lowest)

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0

Alignment:
HBDRCCMCGCCCHHHD
----CCCCRCCC----

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH


Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0189858

Alignment:
GKRGGGGGGGGGGBD
-----GGGKGGGG--

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD


Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0254924

Alignment:
BHHDYGGGGGGGGBVD
-----GGGKGGGG---

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0331118

Alignment:
MHHHWHYTMCCHCCCACVAABVH
-------CCCCRCCC--------

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0351247

Alignment:
VHTGCGGGGGCGGH
-----GGGKGGGG-

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH


Dataset #: 2 Motif ID: 60 Motif name: Motif 60

Original motif Reverse complement motif
Consensus sequence: CTGGAR Consensus sequence: MTCCAG

Best Matches for Motif ID 60 (Highest to Lowest)

Motif ID: UP00031
Motif name: Zbtb3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0

Alignment:
BBBAVTGCAGTGBBVDD
----MTCCAG-------

Original motif Reverse complement motif
Consensus sequence: DDBBBCACTGCABTBBB Consensus sequence: BBBAVTGCAGTGBBVDD


Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.00563465

Alignment:
HDHDDCCAGACABBHVH
---MTCCAG--------

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD


Motif ID: UP00416
Motif name: Fli1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.00856965

Alignment:
DHDACCGGAAKTBBVV
----CTGGAR------

Original motif Reverse complement motif
Consensus sequence: VBBVAYTTCCGGTDDH Consensus sequence: DHDACCGGAAKTBBVV


Motif ID: UP00411
Motif name: Erg
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.00868366

Alignment:
BDDACCGGAAKTVBVB
----CTGGAR------

Original motif Reverse complement motif
Consensus sequence: VBBVAYTTCCGGTDDB Consensus sequence: BDDACCGGAAKTVBVB


Motif ID: UP00231
Motif name: Nkx2-2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 6
Similarity score: 0.0091158

Alignment:
HDVRCCACTTGARADBD
-------CTGGAR----

Original motif Reverse complement motif
Consensus sequence: HDVRCCACTTGARADBD Consensus sequence: DVDTKTCAAGTGGKBDH


Dataset #: 2 Motif ID: 61 Motif name: Motif 61

Original motif Reverse complement motif
Consensus sequence: AGATGGY Consensus sequence: KCCATCT

Best Matches for Motif ID 61 (Highest to Lowest)

Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 7
Similarity score: 0

Alignment:
HVDDVCAGATGKYHBBV
------AGATGGY----

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH


Motif ID: UP00036
Motif name: Myf6_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 7
Similarity score: 0.0380154

Alignment:
BDKVCABCTGTTBDBV
--KCCATCT-------

Original motif Reverse complement motif
Consensus sequence: VVDBAACAGBTGBYHB Consensus sequence: BDKVCABCTGTTBDBV


Motif ID: UP00081
Motif name: Mybl1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 7
Similarity score: 0.0385991

Alignment:
BHCGGCAGTTGGBBB
------AGATGGY--

Original motif Reverse complement motif
Consensus sequence: BBVCCAACTGCCGHB Consensus sequence: BHCGGCAGTTGGBBB


Motif ID: UP00033
Motif name: Zfp410_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0422018

Alignment:
BDDYYCATCCCATDDBD
---KCCATCT-------

Original motif Reverse complement motif
Consensus sequence: DVDDATGGGATGKMDDV Consensus sequence: BDDYYCATCCCATDDBD


Motif ID: UP00092
Motif name: Myb_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0463999

Alignment:
DBVKGGCAGTTGGTHB
-------AGATGGY--

Original motif Reverse complement motif
Consensus sequence: BDACCAACTGCCRBBH Consensus sequence: DBVKGGCAGTTGGTHB


Dataset #: 2 Motif ID: 62 Motif name: Motif 62

Original motif Reverse complement motif
Consensus sequence: CGCCVCC Consensus sequence: GGVGGCG

Best Matches for Motif ID 62 (Highest to Lowest)

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0

Alignment:
BVVHAGGGGGCGRDHHB
-----GGVGGCG-----

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.0105671

Alignment:
VHTGCGGGGGCGGH
-----GGVGGCG--

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH


Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.0302678

Alignment:
HBDRCCMCGCCCHHHD
----CGCCVCC-----

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.0347726

Alignment:
BADHBDHCGCCCMCGCAHHDBBV
-------CGCCVCC---------

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.0384581

Alignment:
DHHBCCCCGCCAHHBHB
-------CGCCVCC---

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD


Dataset #: 2 Motif ID: 63 Motif name: Motif 63

Original motif Reverse complement motif
Consensus sequence: AGAGGGWG Consensus sequence: CWCCCTCT

Best Matches for Motif ID 63 (Highest to Lowest)

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0

Alignment:
BVVHAGGGGGCGRDHHB
----AGAGGGWG-----

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 8
Similarity score: 0.00709886

Alignment:
DVVTTVGTGGGHGGYAMHWHHHY
-----AGAGGGWG----------

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY


Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 12
Number of overlap: 8
Similarity score: 0.0107485

Alignment:
YBVDMGTGGGTGGTCKVVBVBBT
----AGAGGGWG-----------

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT


Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0126141

Alignment:
VHTGCGGGGGCGGH
----AGAGGGWG--

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH


Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0180504

Alignment:
GKRGGGGGGGGGGBD
--AGAGGGWG-----

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD


Dataset #: 2 Motif ID: 64 Motif name: Motif 64

Original motif Reverse complement motif
Consensus sequence: CATATRCA Consensus sequence: TGMATATG

Best Matches for Motif ID 64 (Highest to Lowest)

Motif ID: UP00211
Motif name: Pou3f3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0

Alignment:
HADDTATGCATAATDDA
------TGMATATG---

Original motif Reverse complement motif
Consensus sequence: HADDTATGCATAATDDA Consensus sequence: TDDATTATGCATADDTH


Motif ID: UP00179
Motif name: Pou2f3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00980027

Alignment:
BHDTATGCAAATBHDV
-----TGMATATG---

Original motif Reverse complement motif
Consensus sequence: BHDTATGCAAATBHDV Consensus sequence: BHHVATTTGCATAHHV


Motif ID: UP00191
Motif name: Pou2f2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.011527

Alignment:
BHDTATGCAAATDHDV
-----TGMATATG---

Original motif Reverse complement motif
Consensus sequence: BHDTATGCAAATDHDV Consensus sequence: BHHDATTTGCATAHHV


Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0243027

Alignment:
HDYTTGCACACGDHBH
----TGMATATG----

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH


Motif ID: UP00042
Motif name: Gm397_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0250687

Alignment:
HHRTATGTGCACATHHD
---CATATRCA------

Original motif Reverse complement motif
Consensus sequence: HHDATGTGCACATAMDH Consensus sequence: HHRTATGTGCACATHHD


Dataset #: 2 Motif ID: 65 Motif name: Motif 65

Original motif Reverse complement motif
Consensus sequence: ARAACA Consensus sequence: TGTTMT

Best Matches for Motif ID 65 (Highest to Lowest)

Motif ID: UP00101
Motif name: Sox12_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0

Alignment:
THATTGTTVTHAWH
----TGTTMT----

Original motif Reverse complement motif
Consensus sequence: THATTGTTVTHAWH Consensus sequence: DWTHAVAACAATHA


Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.000395587

Alignment:
HBDDRAACAAAGRABHH
---ARAACA--------

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH


Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.00357565

Alignment:
HHBBMCTTTGTTHDDBH
--------TGTTMT---

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH


Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.00753019

Alignment:
WBHHHHHMDATTGTTHDHDVHH
-----------TGTTMT-----

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH


Motif ID: UP00039
Motif name: Foxj3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0083324

Alignment:
DVHWDTGTTWTGDTBDH
-----TGTTMT------

Original motif Reverse complement motif
Consensus sequence: HDBAHCAWAACADWDVD Consensus sequence: DVHWDTGTTWTGDTBDH


Dataset #: 2 Motif ID: 66 Motif name: Motif 66

Original motif Reverse complement motif
Consensus sequence: TATAAATR Consensus sequence: KATTTATA

Best Matches for Motif ID 66 (Highest to Lowest)

Motif ID: UP00118
Motif name: Pou4f3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0

Alignment:
HVTTATTAATKADKHC
---TATAAATR-----

Original motif Reverse complement motif
Consensus sequence: HVTTATTAATKADKHC Consensus sequence: GHYHTYATTAATAAVH


Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.00672344

Alignment:
DWAATRTAAACAAWVVB
----TATAAATR-----

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD


Motif ID: UP00154
Motif name: Dlx3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.00785197

Alignment:
BHVVDATAATTACMVHH
----TATAAATR-----

Original motif Reverse complement motif
Consensus sequence: BHVVDATAATTACMVHH Consensus sequence: DHVRGTAATTATHVVDV


Motif ID: UP00016
Motif name: Sry_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.00840021

Alignment:
VDDDATTATAATHDHV
------TATAAATR--

Original motif Reverse complement motif
Consensus sequence: BHDHATTATAATDDDV Consensus sequence: VDDDATTATAATHDHV


Motif ID: UP00110
Motif name: Dlx4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.011539

Alignment:
GHVRGTAATTATDVVGV
-----KATTTATA----

Original motif Reverse complement motif
Consensus sequence: BCVVDATAATTACMVHC Consensus sequence: GHVRGTAATTATDVVGV


Dataset #: 2 Motif ID: 67 Motif name: Motif 67

Original motif Reverse complement motif
Consensus sequence: SYGCCCYCTDSTGG Consensus sequence: CCASHAGKGGGCKS

Best Matches for Motif ID 67 (Highest to Lowest)

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.036534

Alignment:
BHHDYGGGGGGGGBVD
CCASHAGKGGGCKS--

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 14
Similarity score: 0.0371579

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
-----SYGCCCYCTDSTGG---

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0410702

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
---CCASHAGKGGGCKS------

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00022
Motif name: Zfp740_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0411664

Alignment:
DDDTWCCCCCCGGDRVH
--SYGCCCYCTDSTGG-

Original motif Reverse complement motif
Consensus sequence: DDDTWCCCCCCGGDRVH Consensus sequence: HVKDCCGGGGGGWADDD


Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0419746

Alignment:
BBHBGAGTGGGAHHDB
CCASHAGKGGGCKS--

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV


Dataset #: 2 Motif ID: 68 Motif name: Motif 68

Original motif Reverse complement motif
Consensus sequence: WAAWAAAWAWWWAA Consensus sequence: TTWWWTWTTTWTTW

Best Matches for Motif ID 68 (Highest to Lowest)

Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0252297

Alignment:
HHWAWGTAAAYAAAVDB
---WAAWAAAWAWWWAA

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH


Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0252358

Alignment:
HDTYTTGTTWTKDDDT
TTWWWTWTTTWTTW--

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT


Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0267996

Alignment:
HDHADGTAAACAAAVVH
---WAAWAAAWAWWWAA

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH


Motif ID: UP00244
Motif name: Tlx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0275942

Alignment:
WWDTTATTAATTHATTV
--TTWWWTWTTTWTTW-

Original motif Reverse complement motif
Consensus sequence: BAATHAATTAATAAHWW Consensus sequence: WWDTTATTAATTHATTV


Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0288501

Alignment:
HDHRTAAACAAAHDDD
-WAAWAAAWAWWWAA-

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH


Dataset #: 2 Motif ID: 69 Motif name: Motif 69

Original motif Reverse complement motif
Consensus sequence: CCTGGARCTGGAGT Consensus sequence: ACTCCAGMTCCAGG

Best Matches for Motif ID 69 (Highest to Lowest)

Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0303891

Alignment:
BHHDTCCCACTCBDBV
--ACTCCAGMTCCAGG

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV


Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.031849

Alignment:
DHDBCAAGGTCAHVBDH
-ACTCCAGMTCCAGG--

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD


Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0328055

Alignment:
TCDAMVBGACGCMAKDDDVBBD
--------ACTCCAGMTCCAGG

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD


Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0343241

Alignment:
HVHBVTGTCTGGDDHDD
-CCTGGARCTGGAGT--

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD


Motif ID: UP00076
Motif name: Rfxdc2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0347793

Alignment:
HDDVSGTRTCMADGBVB
ACTCCAGMTCCAGG---

Original motif Reverse complement motif
Consensus sequence: BBVCDTRGAKACSVDDH Consensus sequence: HDDVSGTRTCMADGBVB


Dataset #: 3 Motif ID: 70 Motif name: Ar

Original motif Reverse complement motif
Consensus sequence: HWDAGHACRHHVTGTHCCHVMV Consensus sequence: VRVDGGHACAVDDKGTHCTDWH

Best Matches for Motif ID 70 (Highest to Lowest)

Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 22
Similarity score: 0.0676991

Alignment:
HBHDVBWGATHBTATCRVBHHH
HWDAGHACRHHVTGTHCCHVMV

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH


Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 22
Similarity score: 0.0692146

Alignment:
VVYDDDCHCAVACAATTDBVAC
VRVDGGHACAVDDKGTHCTDWH

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.0695612

Alignment:
DDHBHBSTCACGTGAHBBDHHM
VRVDGGHACAVDDKGTHCTDWH

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 22
Similarity score: 0.0771346

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
-HWDAGHACRHHVTGTHCCHVMV

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00526
Motif name: Foxn1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 22
Similarity score: 0.0772045

Alignment:
HDWHMHGACGCGCGTRBVVBHW
VRVDGGHACAVDDKGTHCTDWH

Original motif Reverse complement motif
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Consensus sequence: HDWHMHGACGCGCGTRBVVBHW


Dataset #: 3 Motif ID: 71 Motif name: Arnt

Original motif Reverse complement motif
Consensus sequence: CACGTG Consensus sequence: CACGTG

Best Matches for Motif ID 71 (Highest to Lowest)

Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0

Alignment:
RDHDBVDTCACGTGASBHVHDH
--------CACGTG--------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0026425

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
---------CACGTG--------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0044422

Alignment:
DDASCACGTGBTBVDD
----CACGTG------

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD


Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0342153

Alignment:
DHDBHGCACCTGBDDVB
------CACGTG-----

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB


Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.0471928

Alignment:
HDYTTGCACACGDHBH
--------CACGTG--

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH


Dataset #: 3 Motif ID: 72 Motif name: ArntAhr

Original motif Reverse complement motif
Consensus sequence: YGCGTG Consensus sequence: CACGCM

Best Matches for Motif ID 72 (Highest to Lowest)

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
------YGCGTG-----------

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00002
Motif name: Sp4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.00183587

Alignment:
HHDGBCACGCCTWDB
-----CACGCM----

Original motif Reverse complement motif
Consensus sequence: BDWAGGCGTGBCHHD Consensus sequence: HHDGBCACGCCTWDB


Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.00348048

Alignment:
HDGTCGCGTGDCVB
----YGCGTG----

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB


Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 6
Similarity score: 0.00526158

Alignment:
TCDAMVBGACGCMAKDDDVBBD
-------CACGCM---------

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD


Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.00558171

Alignment:
HBGYGTGTGTGCVRVD
---YGCGTG-------

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD


Dataset #: 3 Motif ID: 73 Motif name: CREB1

Original motif Reverse complement motif
Consensus sequence: TGACGTCA Consensus sequence: TGACGTCA

Best Matches for Motif ID 73 (Highest to Lowest)

Motif ID: UP00103
Motif name: Jundm2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0

Alignment:
BBGATGACGTCAYCVH
----TGACGTCA----

Original motif Reverse complement motif
Consensus sequence: BBGATGACGTCAYCVH Consensus sequence: HVGMTGACGTCATCBB


Motif ID: UP00020
Motif name: Atf1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 2.53244e-05

Alignment:
DBDRTGACGTCAYHRD
----TGACGTCA----

Original motif Reverse complement motif
Consensus sequence: DBDRTGACGTCAYHRD Consensus sequence: DMDMTGACGTCAKHBD


Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 8
Similarity score: 0.029362

Alignment:
TCDAMVBGACGCMAKDDDVBBD
------TGACGTCA--------

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD


Motif ID: UP00020
Motif name: Atf1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0350871

Alignment:
DDTMDTCGTCATDV
---TGACGTCA---

Original motif Reverse complement motif
Consensus sequence: VDATGACGADYADH Consensus sequence: DDTMDTCGTCATDV


Motif ID: UP00084
Motif name: Gmeb1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0378098

Alignment:
BHBBKKACGTMMVDBVB
----TGACGTCA-----

Original motif Reverse complement motif
Consensus sequence: BHBBKKACGTMMVDBVB Consensus sequence: BVVDVRYACGTRYVBHB


Dataset #: 3 Motif ID: 74 Motif name: CTCF

Original motif Reverse complement motif
Consensus sequence: YDRCCASYAGRKGGCRSYV Consensus sequence: BMSMGCCYMCTKSTGGMHM

Best Matches for Motif ID 74 (Highest to Lowest)

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 19
Similarity score: 0.0409369

Alignment:
BADHBDHCGCCCMCGCAHHDBBV
----BMSMGCCYMCTKSTGGMHM

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 19
Similarity score: 0.0409815

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
-YDRCCASYAGRKGGCRSYV---

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 19
Similarity score: 0.0431951

Alignment:
VMYDHDGMCCHCCKBGVVAAVH
---BMSMGCCYMCTKSTGGMHM

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH


Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 19
Similarity score: 0.0469794

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
---BMSMGCCYMCTKSTGGMHM

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK


Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 19
Similarity score: 0.0482204

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
YDRCCASYAGRKGGCRSYV----

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB


Dataset #: 3 Motif ID: 75 Motif name: Ddit3Cebpa

Original motif Reverse complement motif
Consensus sequence: VDRTGCAATMCC Consensus sequence: GGRATTGCAKHB

Best Matches for Motif ID 75 (Highest to Lowest)

Motif ID: UP00031
Motif name: Zbtb3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.026968

Alignment:
BBBAVTGCAGTGBBVDD
--VDRTGCAATMCC---

Original motif Reverse complement motif
Consensus sequence: DDBBBCACTGCABTBBB Consensus sequence: BBBAVTGCAGTGBBVDD


Motif ID: UP00035
Motif name: Hic1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0308236

Alignment:
DDBHGGTTGGCATVBD
---GGRATTGCAKHB-

Original motif Reverse complement motif
Consensus sequence: DBBATGCCAACCHVHH Consensus sequence: DDBHGGTTGGCATVBD


Motif ID: UP00083
Motif name: Tcf7l2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.0323758

Alignment:
VDVVATCAATCRBBHD
-VDRTGCAATMCC---

Original motif Reverse complement motif
Consensus sequence: VDVVATCAATCRBBHD Consensus sequence: DHVBKGATTGATVBDV


Motif ID: UP00016
Motif name: Sry_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0357538

Alignment:
HHDHDRAACAATDDVHV
---VDRTGCAATMCC--

Original motif Reverse complement motif
Consensus sequence: HHDHDRAACAATDDVHV Consensus sequence: VHVHDATTGTTMHDDDH


Motif ID: UP00067
Motif name: Lef1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.0387064

Alignment:
VDVVATCAATCAHBHD
-VDRTGCAATMCC---

Original motif Reverse complement motif
Consensus sequence: VDVVATCAATCAHBHD Consensus sequence: DHVDTGATTGATVBDV


Dataset #: 3 Motif ID: 76 Motif name: E2F1

Original motif Reverse complement motif
Consensus sequence: TTTSGCGC Consensus sequence: GCGCSAAA

Best Matches for Motif ID 76 (Highest to Lowest)

Motif ID: UP00001
Motif name: E2F2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0

Alignment:
BBBDTTGGCGCCKWVVD
---TTTSGCGC------

Original motif Reverse complement motif
Consensus sequence: HVBWYGGCGCCAADVBB Consensus sequence: BBBDTTGGCGCCKWVVD


Motif ID: UP00003
Motif name: E2F3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00182028

Alignment:
HBHWYGGCGCCAMDVBB
------GCGCSAAA---

Original motif Reverse complement motif
Consensus sequence: HBHWYGGCGCCAMDVBB Consensus sequence: BBBDYTGGCGCCKWDBD


Motif ID: UP00072
Motif name: IRC900814_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0237639

Alignment:
DDHTACGACAAAWDDB
----GCGCSAAA----

Original motif Reverse complement motif
Consensus sequence: DDHTACGACAAAWDDB Consensus sequence: BHDWTTTGTCGTAHDD


Motif ID: UP00003
Motif name: E2F3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0275636

Alignment:
WHSGCGCGCCHTDHB
-----GCGCSAAA--

Original motif Reverse complement motif
Consensus sequence: VHDADGGCGCGCSHW Consensus sequence: WHSGCGCGCCHTDHB


Motif ID: UP00065
Motif name: Zfp161_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.028109

Alignment:
DMMDGMGCGCGCGCHD
--------GCGCSAAA

Original motif Reverse complement motif
Consensus sequence: DDGCGCGCGCRCHYRD Consensus sequence: DMMDGMGCGCGCGCHD


Dataset #: 3 Motif ID: 77 Motif name: EBF1

Original motif Reverse complement motif
Consensus sequence: MCCCMAGGGA Consensus sequence: TCCCTYGGGY

Best Matches for Motif ID 77 (Highest to Lowest)

Motif ID: UP00057
Motif name: Zic2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0191678

Alignment:
VCCCCCCCGGGGGRB
---MCCCMAGGGA--

Original motif Reverse complement motif
Consensus sequence: BMCCCCCGGGGGGGB Consensus sequence: VCCCCCCCGGGGGRB


Motif ID: UP00102
Motif name: Zic1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0198894

Alignment:
CCCCCCCGGGGGHB
--MCCCMAGGGA--

Original motif Reverse complement motif
Consensus sequence: BHCCCCCGGGGGGG Consensus sequence: CCCCCCCGGGGGHB


Motif ID: UP00006
Motif name: Zic3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0208394

Alignment:
VCCCCCCCGGGGGRB
---MCCCMAGGGA--

Original motif Reverse complement motif
Consensus sequence: BMCCCCCGGGGGGGB Consensus sequence: VCCCCCCCGGGGGRB


Motif ID: UP00010
Motif name: Tcfap2b_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0215181

Alignment:
HTGCCMTVKGGCMD
--TCCCTYGGGY--

Original motif Reverse complement motif
Consensus sequence: DYGCCYBARGGCAH Consensus sequence: HTGCCMTVKGGCMD


Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 13
Number of overlap: 10
Similarity score: 0.0271543

Alignment:
HTBVVVDGGACCACCCRGRDBG
MCCCMAGGGA------------

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH


Dataset #: 3 Motif ID: 78 Motif name: Egr1

Original motif Reverse complement motif
Consensus sequence: TTTSGCGC Consensus sequence: GCGCSAAA

Best Matches for Motif ID 78 (Highest to Lowest)

Motif ID: UP00001
Motif name: E2F2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0

Alignment:
BBBDTTGGCGCCKWVVD
---TTTSGCGC------

Original motif Reverse complement motif
Consensus sequence: HVBWYGGCGCCAADVBB Consensus sequence: BBBDTTGGCGCCKWVVD


Motif ID: UP00003
Motif name: E2F3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00182028

Alignment:
HBHWYGGCGCCAMDVBB
------GCGCSAAA---

Original motif Reverse complement motif
Consensus sequence: HBHWYGGCGCCAMDVBB Consensus sequence: BBBDYTGGCGCCKWDBD


Motif ID: UP00072
Motif name: IRC900814_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0237639

Alignment:
DDHTACGACAAAWDDB
----GCGCSAAA----

Original motif Reverse complement motif
Consensus sequence: DDHTACGACAAAWDDB Consensus sequence: BHDWTTTGTCGTAHDD


Motif ID: UP00003
Motif name: E2F3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0275636

Alignment:
WHSGCGCGCCHTDHB
-----GCGCSAAA--

Original motif Reverse complement motif
Consensus sequence: VHDADGGCGCGCSHW Consensus sequence: WHSGCGCGCCHTDHB


Motif ID: UP00065
Motif name: Zfp161_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.028109

Alignment:
DMMDGMGCGCGCGCHD
--------GCGCSAAA

Original motif Reverse complement motif
Consensus sequence: DDGCGCGCGCRCHYRD Consensus sequence: DMMDGMGCGCGCGCHD


Dataset #: 3 Motif ID: 79 Motif name: ELK1

Original motif Reverse complement motif
Consensus sequence: VDDCCGGAAR Consensus sequence: MTTCCGGHBV

Best Matches for Motif ID 79 (Highest to Lowest)

Motif ID: UP00414
Motif name: Ets1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.00796762

Alignment:
BDDDHACCGGAARTVDD
---VDDCCGGAAR----

Original motif Reverse complement motif
Consensus sequence: BDDDHACCGGAARTVDD Consensus sequence: DDBAMTTCCGGTDHDHB


Motif ID: UP00015
Motif name: Ehf_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0101295

Alignment:
DDACTTCCGGBTHBB
---MTTCCGGHBV--

Original motif Reverse complement motif
Consensus sequence: VBDABCCGGAAGTDD Consensus sequence: DDACTTCCGGBTHBB


Motif ID: UP00411
Motif name: Erg
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.0105752

Alignment:
BDDACCGGAAKTVBVB
-VDDCCGGAAR-----

Original motif Reverse complement motif
Consensus sequence: VBBVAYTTCCGGTDDB Consensus sequence: BDDACCGGAAKTVBVB


Motif ID: UP00404
Motif name: Elf2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.010693

Alignment:
BDWDCCGGAAGTHBBD
-VDDCCGGAAR-----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGDWDB Consensus sequence: BDWDCCGGAAGTHBBD


Motif ID: UP00423
Motif name: Gm5454
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.011366

Alignment:
DVHACCGGAAGTHDDV
-VDDCCGGAAR-----

Original motif Reverse complement motif
Consensus sequence: VDHHACTTCCGGTHVH Consensus sequence: DVHACCGGAAGTHDDV


Dataset #: 3 Motif ID: 80 Motif name: ELK4

Original motif Reverse complement motif
Consensus sequence: ACCGGAAGT Consensus sequence: ACTTCCGGT

Best Matches for Motif ID 80 (Highest to Lowest)

Motif ID: UP00013
Motif name: Gabpa_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 9
Similarity score: 0

Alignment:
HVHHACCGGAAGTDHHV
----ACCGGAAGT----

Original motif Reverse complement motif
Consensus sequence: HVHHACCGGAAGTDHHV Consensus sequence: BHHHACTTCCGGTHHBD


Motif ID: UP00414
Motif name: Ets1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 9
Similarity score: 0.0025276

Alignment:
DDBAMTTCCGGTDHDHB
---ACTTCCGGT-----

Original motif Reverse complement motif
Consensus sequence: BDDDHACCGGAARTVDD Consensus sequence: DDBAMTTCCGGTDHDHB


Motif ID: UP00421
Motif name: Etv1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 9
Similarity score: 0.00356917

Alignment:
MVHBACCGGAAGTVDVH
----ACCGGAAGT----

Original motif Reverse complement motif
Consensus sequence: MVHBACCGGAAGTVDVH Consensus sequence: HBDBACTTCCGGTBHVY


Motif ID: UP00410
Motif name: Elk1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 9
Similarity score: 0.00371937

Alignment:
VVHBACCGGAAGTDBHD
----ACCGGAAGT----

Original motif Reverse complement motif
Consensus sequence: VVHBACCGGAAGTDBHD Consensus sequence: DHBDACTTCCGGTVHVB


Motif ID: UP00420
Motif name: Elk3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 9
Similarity score: 0.0045671

Alignment:
DVBBACCGGAAGYDVVV
----ACCGGAAGT----

Original motif Reverse complement motif
Consensus sequence: DVBBACCGGAAGYDVVV Consensus sequence: VBVDMCTTCCGGTVBVD


Dataset #: 3 Motif ID: 81 Motif name: ESR1

Original motif Reverse complement motif
Consensus sequence: VDBHMAGGTCACCCTGACCY Consensus sequence: MGGTCAGGGTGACCTRDBHV

Best Matches for Motif ID 81 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 20
Similarity score: 0.0658405

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
VDBHMAGGTCACCCTGACCY---

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 20
Similarity score: 0.0689748

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
VDBHMAGGTCACCCTGACCY---

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB


Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 20
Similarity score: 0.0701247

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
MGGTCAGGGTGACCTRDBHV--

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH


Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 20
Similarity score: 0.0711267

Alignment:
HVGVSAGGAGGGTCYHHHHYVH
MGGTCAGGGTGACCTRDBHV--

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH


Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 20
Similarity score: 0.0742427

Alignment:
CVHBSCGGGTGGTCMHVHHCDH
-VDBHMAGGTCACCCTGACCY-

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH


Dataset #: 3 Motif ID: 82 Motif name: ESR2

Original motif Reverse complement motif
Consensus sequence: VHRGGTCABDBTGMCCTB Consensus sequence: BAGGYCABHBTGACCKHV

Best Matches for Motif ID 82 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.0443894

Alignment:
GTVBDAATTGTVTGHGDDHKVB
---VHRGGTCABDBTGMCCTB-

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC


Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 18
Similarity score: 0.049219

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
---VHRGGTCABDBTGMCCTB--

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH


Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 18
Similarity score: 0.0509182

Alignment:
DDHBHBSTCACGTGAHBBDHHM
--VHRGGTCABDBTGMCCTB--

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM


Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 18
Similarity score: 0.0527075

Alignment:
DVTTVVCVYGGHGGYCHHDMYB
-BAGGYCABHBTGACCKHV---

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH


Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 18
Similarity score: 0.0541044

Alignment:
WBHHHHHMDATTGTTHDHDVHH
-BAGGYCABHBTGACCKHV---

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH


Dataset #: 3 Motif ID: 83 Motif name: Esrrb

Original motif Reverse complement motif
Consensus sequence: VBBYCAAGGTCA Consensus sequence: TGACCTTGMBBB

Best Matches for Motif ID 83 (Highest to Lowest)

Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 12
Similarity score: 0

Alignment:
HHBVHTGACCTTGVDHD
-----TGACCTTGMBBB

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD


Motif ID: UP00009
Motif name: Nr2f2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0205471

Alignment:
DHBHAAAGGTCAHVHB
VBBYCAAGGTCA----

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCAHVHB Consensus sequence: BHVDTGACCTTTDVDD


Motif ID: UP00048
Motif name: Rara
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0214372

Alignment:
DHBHAAAGGTCACVHD
VBBYCAAGGTCA----

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCACVHD Consensus sequence: HHVGTGACCTTTDVDD


Motif ID: UP00009
Motif name: Nr2f2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.0430759

Alignment:
HVBVTGACCCSGBVBV
----TGACCTTGMBBB

Original motif Reverse complement motif
Consensus sequence: VBVBCSGGGTCAVBBH Consensus sequence: HVBVTGACCCSGBVBV


Motif ID: UP00066
Motif name: Hnf4a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0451776

Alignment:
BDBVMGGGGTCAABHDV
VBBYCAAGGTCA-----

Original motif Reverse complement motif
Consensus sequence: BDBVMGGGGTCAABHDV Consensus sequence: BHHVTTGACCCCYVVDB


Dataset #: 3 Motif ID: 84 Motif name: GABPA

Original motif Reverse complement motif
Consensus sequence: CCGGAAGTGVV Consensus sequence: VVCACTTCCGG

Best Matches for Motif ID 84 (Highest to Lowest)

Motif ID: UP00013
Motif name: Gabpa_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0

Alignment:
BHHHACTTCCGGTHHBD
-VVCACTTCCGG-----

Original motif Reverse complement motif
Consensus sequence: HVHHACCGGAAGTDHHV Consensus sequence: BHHHACTTCCGGTHHBD


Motif ID: UP00410
Motif name: Elk1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.000136484

Alignment:
VVHBACCGGAAGTDBHD
-----CCGGAAGTGVV-

Original motif Reverse complement motif
Consensus sequence: VVHBACCGGAAGTDBHD Consensus sequence: DHBDACTTCCGGTVHVB


Motif ID: UP00420
Motif name: Elk3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.000219706

Alignment:
DVBBACCGGAAGYDVVV
-----CCGGAAGTGVV-

Original motif Reverse complement motif
Consensus sequence: DVBBACCGGAAGYDVVV Consensus sequence: VBVDMCTTCCGGTVBVD


Motif ID: UP00421
Motif name: Etv1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.000932023

Alignment:
MVHBACCGGAAGTVDVH
-----CCGGAAGTGVV-

Original motif Reverse complement motif
Consensus sequence: MVHBACCGGAAGTVDVH Consensus sequence: HBDBACTTCCGGTBHVY


Motif ID: UP00404
Motif name: Elf2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.00527483

Alignment:
DBBHACTTCCGGDWDB
-VVCACTTCCGG----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGDWDB Consensus sequence: BDWDCCGGAAGTHBBD


Dataset #: 3 Motif ID: 85 Motif name: Hand1Tcfe2a

Original motif Reverse complement motif
Consensus sequence: BRTCTGGMWT Consensus sequence: AWRCCAGAMB

Best Matches for Motif ID 85 (Highest to Lowest)

Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0

Alignment:
HVHBVTGTCTGGDDHDD
-----BRTCTGGMWT--

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD


Motif ID: UP00404
Motif name: Elf2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0172295

Alignment:
BDWDCCGGAAGTHBBD
-AWRCCAGAMB-----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGDWDB Consensus sequence: BDWDCCGGAAGTHBBD


Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0178635

Alignment:
VBBDMYCATCTGVHHBH
------BRTCTGGMWT-

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH


Motif ID: UP00040
Motif name: Irf5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.022871

Alignment:
VBHAKTCTCGHTHHV
---BRTCTGGMWT--

Original motif Reverse complement motif
Consensus sequence: BHDAHCGAGARTHBV Consensus sequence: VBHAKTCTCGHTHHV


Motif ID: UP00038
Motif name: Spdef_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0241958

Alignment:
VHRCATCCGGATHHBB
---BRTCTGGMWT---

Original motif Reverse complement motif
Consensus sequence: VHRCATCCGGATHHBB Consensus sequence: VVHHATCCGGATGKHV


Dataset #: 3 Motif ID: 86 Motif name: HIF1AARNT

Original motif Reverse complement motif
Consensus sequence: VBACGTGV Consensus sequence: VCACGTBV

Best Matches for Motif ID 86 (Highest to Lowest)

Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0

Alignment:
HDYTTGCACACGDHBH
-------VCACGTBV-

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH


Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.000574345

Alignment:
DDASCACGTGBTBVDD
---VBACGTGV-----

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 8
Similarity score: 0.00642455

Alignment:
YDYBDHTMCACGTGGADDBMDGT
-------VBACGTGV--------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00084
Motif name: Gmeb1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0131171

Alignment:
BVVDVRYACGTRYVBHB
-----VBACGTGV----

Original motif Reverse complement motif
Consensus sequence: BHBBKKACGTMMVDBVB Consensus sequence: BVVDVRYACGTRYVBHB


Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.014006

Alignment:
RDHDBVDTCACGTGASBHVHDH
-------VCACGTBV-------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM


Dataset #: 3 Motif ID: 87 Motif name: HNF4A

Original motif Reverse complement motif
Consensus sequence: RGGBCAAAGKYCA Consensus sequence: TGMYCTTTGBCCK

Best Matches for Motif ID 87 (Highest to Lowest)

Motif ID: UP00058
Motif name: Tcf3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0357776

Alignment:
HHHASATCAAAGVRHHH
---RGGBCAAAGKYCA-

Original motif Reverse complement motif
Consensus sequence: HHHASATCAAAGVRHHH Consensus sequence: HHHKVCTTTGATSTHHH


Motif ID: UP00054
Motif name: Tcf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0357792

Alignment:
BHHASATCAAAGGAHHH
---RGGBCAAAGKYCA-

Original motif Reverse complement motif
Consensus sequence: BHHASATCAAAGGAHHH Consensus sequence: HHHTCCTTTGATSTHHV


Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 13
Similarity score: 0.0359011

Alignment:
VDDAGATCAAAGGKDDD
---RGGBCAAAGKYCA-

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD


Motif ID: UP00083
Motif name: Tcf7l2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0360786

Alignment:
BDDASATCAAAGGMDDD
---RGGBCAAAGKYCA-

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATSTDDV Consensus sequence: BDDASATCAAAGGMDDD


Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.0405764

Alignment:
HVDDVCAGATGKYHBBV
-RGGBCAAAGKYCA---

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH


Dataset #: 3 Motif ID: 88 Motif name: INSM1

Original motif Reverse complement motif
Consensus sequence: TGYCAGGGGGCR Consensus sequence: MGCCCCCTGMCA

Best Matches for Motif ID 88 (Highest to Lowest)

Motif ID: UP00022
Motif name: Zfp740_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.00085101

Alignment:
HVKDCCGGGGGGWADDD
--TGYCAGGGGGCR---

Original motif Reverse complement motif
Consensus sequence: DDDTWCCCCCCGGDRVH Consensus sequence: HVKDCCGGGGGGWADDD


Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 12
Similarity score: 0.00406431

Alignment:
BVVHAGGGGGCGRDHHB
TGYCAGGGGGCR-----

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB


Motif ID: UP00047
Motif name: Zbtb7b_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.00486866

Alignment:
VHWTTHGGGGGGVDD
--TGYCAGGGGGCR-

Original motif Reverse complement motif
Consensus sequence: DDVCCCCCCHAAWHB Consensus sequence: VHWTTHGGGGGGVDD


Motif ID: UP00079
Motif name: Esrra_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 12
Similarity score: 0.00862553

Alignment:
VKBBAGGGGTCAHDBBH
TGYCAGGGGGCR-----

Original motif Reverse complement motif
Consensus sequence: VKBBAGGGGTCAHDBBH Consensus sequence: DBBHHTGACCCCTBBYV


Motif ID: UP00024
Motif name: Glis2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.00936306

Alignment:
HKBBGGGGGGTCVHHH
-TGYCAGGGGGCR---

Original motif Reverse complement motif
Consensus sequence: HHHVGACCCCCCVBRD Consensus sequence: HKBBGGGGGGTCVHHH


Dataset #: 3 Motif ID: 89 Motif name: Klf4

Original motif Reverse complement motif
Consensus sequence: DGGGYGKGGC Consensus sequence: GCCYCMCCCD

Best Matches for Motif ID 89 (Highest to Lowest)

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0

Alignment:
DHHDGGGCGRGGKHBH
---DGGGYGKGGC---

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH


Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0153308

Alignment:
DBCCCCCCCCCCMYC
---GCCYCMCCCD--

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD


Motif ID: UP00002
Motif name: Sp4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0186791

Alignment:
BDWAGGCGTGBCHHD
--DGGGYGKGGC---

Original motif Reverse complement motif
Consensus sequence: BDWAGGCGTGBCHHD Consensus sequence: HHDGBCACGCCTWDB


Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0218399

Alignment:
HVBCCCCCCCCMHHHB
--GCCYCMCCCD----

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD


Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0249586

Alignment:
VHTGCGGGGGCGGH
GCCYCMCCCD----

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH


Dataset #: 3 Motif ID: 90 Motif name: Mafb

Original motif Reverse complement motif
Consensus sequence: GCTGACDB Consensus sequence: BHGTCAGC

Best Matches for Motif ID 90 (Highest to Lowest)

Motif ID: UP00044
Motif name: Mafk_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.00415984

Alignment:
DWAAAWTGCTGACTH
-------GCTGACDB

Original motif Reverse complement motif
Consensus sequence: DWAAAWTGCTGACTH Consensus sequence: HAGTCAGCAWTTTWD


Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.012743

Alignment:
HAAWDTGCTGACDWARH
------GCTGACDB---

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH


Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.0222535

Alignment:
HHDVVGCAGCTGVBKVB
--------GCTGACDB-

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB


Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0269322

Alignment:
VHYTCCDWCCGCGTCMMTHWHV
----BHGTCAGC----------

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching forma