**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 4 Number of top significant motifs: 10 Number of best matches: 5 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # DREME_DM254.txt 45 1 MEME-CHIP_DM254.txt 24 2 PScanChIP_DM254.txt 63 3 RSAT_peak-motifs_DM254.txt 39 4 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches in Database for Each Motif (Highest to Lowest) ***************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Consensus sequence (original motif): AGRKGGCR Consensus sequence (reverse complement motif): KGCCYKCT ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Reverse Complement Backward 6 8 0 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB ----AGRKGGCR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Original Motif Forward 5 8 0.0152094 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH ----AGRKGGCR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Reverse Complement Backward 3 8 0.0160089 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: VHTGCGGGGGCGGH ----AGRKGGCR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_primary Reverse Complement Reverse Complement Backward 6 8 0.0244919 Species: Mus musculus Consensus sequence (original motif): DYGCCYBARGGCAH Consensus sequence (reverse complement motif): HTGCCMTVKGGCMD Alignment: HTGCCMTVKGGCMD -KGCCYKCT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_secondary Original Motif Original Motif Backward 3 8 0.0267457 Species: Mus musculus Consensus sequence (original motif): DDBVHATAGGGGRBRMB Consensus sequence (reverse complement motif): BYMBKCCCCTATDVBHD Alignment: DDBVHATAGGGGRBRMB -------AGRKGGCR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: Motif 2 Consensus sequence (original motif): AAAAHAAA Consensus sequence (reverse complement motif): TTTDTTTT ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Original Motif Backward 4 8 0 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: DWAATRTAAACAAWVVB ------AAAAHAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Original Motif Backward 7 8 0.000495784 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HBDDDAACAAAGRVBHH ---AAAAHAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Original Motif Forward 4 8 0.000916442 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH ---AAAAHAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Original Motif Original Motif Backward 4 8 0.00246818 Species: Mus musculus Consensus sequence (original motif): HDHADGTAAACAAAVVH Consensus sequence (reverse complement motif): DVVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH ------AAAAHAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Original Motif Original Motif Forward 7 8 0.00320862 Species: Mus musculus Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: DDAATGTAAACAAAVVB ------AAAAHAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 3 Motif name: Motif 3 Consensus sequence (original motif): CACACACA Consensus sequence (reverse complement motif): TGTGTGTG ************************************************************************ Best Matches for Motif ID 3 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Reverse Complement Reverse Complement Forward 4 8 0 Species: Mus musculus Consensus sequence (original motif): DVMVGCACACACKCVH Consensus sequence (reverse complement motif): HBGYGTGTGTGCVRVD Alignment: HBGYGTGTGTGCVRVD ---TGTGTGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_secondary Reverse Complement Reverse Complement Backward 4 8 0.0271943 Species: Mus musculus Consensus sequence (original motif): HVHRGCACACAAHHHV Consensus sequence (reverse complement motif): BHHHTTGTGTGCKHVD Alignment: BHHHTTGTGTGCKHVD -----TGTGTGTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_primary Original Motif Original Motif Forward 9 8 0.0336839 Species: Mus musculus Consensus sequence (original motif): DHVDTGTGCACAYAHDH Consensus sequence (reverse complement motif): HDHTMTGTGCACADVHD Alignment: DHVDTGTGCACAYAHDH --------CACACACA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Reverse Complement Reverse Complement Backward 7 8 0.0355485 Species: Mus musculus Consensus sequence (original motif): HDHDDCCAGACABBHVH Consensus sequence (reverse complement motif): HVHBVTGTCTGGDDHDD Alignment: HVHBVTGTCTGGDDHDD ---TGTGTGTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Original Motif Original Motif Forward 12 8 0.0404116 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: ABBBBVVRGACCACCCACRDBBM -----------CACACACA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 4 Motif name: Motif 4 Consensus sequence (original motif): TTTWWAW Consensus sequence (reverse complement motif): WTWWAAA ************************************************************************ Best Matches for Motif ID 4 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00207 Hoxb9 Original Motif Reverse Complement Forward 4 7 0 Species: Mus musculus Consensus sequence (original motif): VRRGCMATAAAAHHHD Consensus sequence (reverse complement motif): HDHHTTTTATRGCKMV Alignment: HDHHTTTTATRGCKMV ---TTTWWAW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Reverse Complement Forward 8 7 0.000691918 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: VVVWTTGTTTAMATTWD -------TTTWWAW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Original Motif Reverse Complement Backward 7 7 0.00184871 Species: Mus musculus Consensus sequence (original motif): VRHCCAATAAAAWHHV Consensus sequence (reverse complement motif): VDHWTTTTATTGGDKB Alignment: VDHWTTTTATTGGDKB ---TTTWWAW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00213 Hoxa9 Original Motif Reverse Complement Backward 7 7 0.00275206 Species: Mus musculus Consensus sequence (original motif): DCGGYCATWAAAWTADW Consensus sequence (reverse complement motif): WDTAWTTTWATGKCCGD Alignment: WDTAWTTTWATGKCCGD ----TTTWWAW------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00114 Homez Original Motif Original Motif Backward 2 7 0.00499979 Species: Mus musculus Consensus sequence (original motif): AHWWMATCGTTTTBADD Consensus sequence (reverse complement motif): HDTVAAAACGATRWWHT Alignment: AHWWMATCGTTTTBADD ---------TTTWWAW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 5 Motif name: Motif 5 Consensus sequence (original motif): CCCCDCCC Consensus sequence (reverse complement motif): GGGDGGGG ************************************************************************ Best Matches for Motif ID 5 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Backward 5 8 0 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD ----CCCCDCCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Reverse Complement Reverse Complement Backward 3 8 0.0165797 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD -----GGGDGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Reverse Complement Reverse Complement Forward 6 8 0.026633 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: BHHDYGGGGGGGGBVD -----GGGDGGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Forward 8 8 0.0273225 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH -------CCCCDCCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Reverse Complement Reverse Complement Forward 6 8 0.0364166 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: VHTGCGGGGGCGGH -----GGGDGGGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 6 Motif name: Motif 6 Consensus sequence (original motif): CTGGRRA Consensus sequence (reverse complement motif): TMMCCAG ************************************************************************ Best Matches for Motif ID 6 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Original Motif Reverse Complement Forward 9 7 0.00121838 Species: Mus musculus Consensus sequence (original motif): HDHDDCCAGACABBHVH Consensus sequence (reverse complement motif): HVHBVTGTCTGGDDHDD Alignment: HVHBVTGTCTGGDDHDD --------CTGGRRA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Original Motif Original Motif Forward 8 7 0.00386806 Species: Mus musculus Consensus sequence (original motif): HDVRCCACTTGARADBD Consensus sequence (reverse complement motif): DVDTKTCAAGTGGKBDH Alignment: HDVRCCACTTGARADBD -------CTGGRRA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Original Motif Forward 2 7 0.00420562 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD -TMMCCAG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00161 Hmbox1 Reverse Complement Reverse Complement Backward 6 7 0.00428647 Species: Mus musculus Consensus sequence (original motif): VHRDWCTAGTTAABDDB Consensus sequence (reverse complement motif): BDDBTTAACTAGWDKHV Alignment: BDDBTTAACTAGWDKHV -----TMMCCAG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Reverse Complement Reverse Complement Forward 9 7 0.010788 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB --------TMMCCAG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 7 Motif name: Motif 7 Consensus sequence (original motif): AGRAAA Consensus sequence (reverse complement motif): TTTMCT ************************************************************************ Best Matches for Motif ID 7 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Reverse Complement Reverse Complement Backward 5 6 0 Species: Mus musculus Consensus sequence (original motif): HHWAWGTAAAYAAAVDB Consensus sequence (reverse complement motif): BDVTTTKTTTACWTWHH Alignment: BDVTTTKTTTACWTWHH -------TTTMCT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Reverse Complement Reverse Complement Forward 8 6 0.0125029 Species: Mus musculus Consensus sequence (original motif): HDHADGTAAACAAAVVH Consensus sequence (reverse complement motif): DVVTTTGTTTACDTHDH Alignment: DVVTTTGTTTACDTHDH -------TTTMCT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_primary Original Motif Original Motif Backward 4 6 0.0161149 Species: Mus musculus Consensus sequence (original motif): DAHMMGGAARTDA Consensus sequence (reverse complement motif): TDAMTTCCYYDTD Alignment: DAHMMGGAARTDA ----AGRAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Reverse Complement Reverse Complement Backward 5 6 0.0165207 Species: Mus musculus Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: BBVTTTGTTTACATTDD -------TTTMCT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Original Motif Original Motif Backward 5 6 0.0170044 Species: Mus musculus Consensus sequence (original motif): HDHYYAATAAAAHHHH Consensus sequence (reverse complement motif): HDHHTTTTATTKKHDD Alignment: HDHYYAATAAAAHHHH ------AGRAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 8 Motif name: Motif 8 Consensus sequence (original motif): AAATAH Consensus sequence (reverse complement motif): DTATTT ************************************************************************ Best Matches for Motif ID 8 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Original Motif Original Motif Backward 5 6 0 Species: Mus musculus Consensus sequence (original motif): HHWAWGTAAAYAAAVDB Consensus sequence (reverse complement motif): BDVTTTKTTTACWTWHH Alignment: HHWAWGTAAAYAAAVDB -------AAATAH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00166 Barhl1 Reverse Complement Reverse Complement Backward 8 6 0.00310877 Species: Mus musculus Consensus sequence (original motif): HAHAACCAATTARBDH Consensus sequence (reverse complement motif): DDVKTAATTGGTTDTH Alignment: DDVKTAATTGGTTDTH ---DTATTT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00242 Hoxc8 Original Motif Original Motif Backward 4 6 0.00420475 Species: Mus musculus Consensus sequence (original motif): BHDDDGTAATTAHHDT Consensus sequence (reverse complement motif): AHDHTAATTACHHHHV Alignment: BHDDDGTAATTAHHDT -------AAATAH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00179 Pou2f3 Original Motif Original Motif Forward 9 6 0.00508605 Species: Mus musculus Consensus sequence (original motif): BHDTATGCAAATBHDV Consensus sequence (reverse complement motif): BHHVATTTGCATAHHV Alignment: BHDTATGCAAATBHDV --------AAATAH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00202 Dlx1 Reverse Complement Original Motif Backward 4 6 0.00517242 Species: Mus musculus Consensus sequence (original motif): BHGVRDTAATTADY Consensus sequence (reverse complement motif): MDTAATTAHMBCHB Alignment: BHGVRDTAATTADY -----DTATTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 9 Motif name: Motif 9 Consensus sequence (original motif): GGTGGCWS Consensus sequence (reverse complement motif): SWGCCACC ************************************************************************ Best Matches for Motif ID 9 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Original Motif Forward 11 8 0 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB ----------GGTGGCWS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Reverse Complement Original Motif Backward 8 8 0.0128982 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: HTBVVVDGGACCACCCRGRDBG -------SWGCCACC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Reverse Complement Backward 10 8 0.0130995 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB ------SWGCCACC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_primary Reverse Complement Original Motif Forward 4 8 0.0142671 Species: Mus musculus Consensus sequence (original motif): DBBATGCCAACCHVHH Consensus sequence (reverse complement motif): DDBHGGTTGGCATVBD Alignment: DBBATGCCAACCHVHH ---SWGCCACC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Reverse Complement Original Motif Forward 8 8 0.0142765 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: HDGHHBHRGACCACCCGSVDVG -------SWGCCACC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 10 Motif name: Motif 10 Consensus sequence (original motif): CTGGCCTC Consensus sequence (reverse complement motif): GAGGCCAG ************************************************************************ Best Matches for Motif ID 10 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Reverse Complement Reverse Complement Forward 8 8 0 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: TCDAMVBGACGCMAKDDDVBBD -------GAGGCCAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Reverse Complement Backward 6 8 0.000107403 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: DBBHHTGACCCCTBBYV ----CTGGCCTC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00020 Atf1_primary Original Motif Reverse Complement Forward 4 8 0.00300031 Species: Mus musculus Consensus sequence (original motif): DBDRTGACGTCAYHRD Consensus sequence (reverse complement motif): DMDMTGACGTCAKHBD Alignment: DMDMTGACGTCAKHBD ---CTGGCCTC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Original Motif Original Motif Backward 6 8 0.00367302 Species: Mus musculus Consensus sequence (original motif): DBHBDTGACCCCDHVHB Consensus sequence (reverse complement motif): VHBHDGGGGTCAHBHBD Alignment: DBHBDTGACCCCDHVHB ----CTGGCCTC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Original Motif Reverse Complement Forward 5 8 0.00526703 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: HHBVHTGACCTTGVDHD ----CTGGCCTC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 11 Motif name: Motif 11 Consensus sequence (original motif): CTBCCTCY Consensus sequence (reverse complement motif): MGAGGBAG ************************************************************************ Best Matches for Motif ID 11 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00085 Sfpi1_primary Original Motif Reverse Complement Forward 4 8 0 Species: Mus musculus Consensus sequence (original motif): BDAWGVGGAAGTDH Consensus sequence (reverse complement motif): HDACTTCCBCWTDV Alignment: HDACTTCCBCWTDV ---CTBCCTCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Reverse Complement Original Motif Backward 4 8 0.000275689 Species: Mus musculus Consensus sequence (original motif): BWAHSMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRSDTWV Alignment: BWAHSMGGAAGTWD ---MGAGGBAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00419 Spic Original Motif Reverse Complement Forward 4 8 0.000518708 Species: Mus musculus Consensus sequence (original motif): VAAAGMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRCTTTB Alignment: DWACTTCCRCTTTB ---CTBCCTCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Reverse Complement Backward 6 8 0.00485464 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB ----MGAGGBAG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Reverse Complement Reverse Complement Backward 2 8 0.00614662 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: DHHDGGGCGRGGKHBH -------MGAGGBAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 12 Motif name: Motif 12 Consensus sequence (original motif): GATGGCTC Consensus sequence (reverse complement motif): GAGCCATC ************************************************************************ Best Matches for Motif ID 12 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Original Motif Forward 8 8 0 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: HVDDVCAGATGKYHBBV -------GATGGCTC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_primary Original Motif Original Motif Backward 2 8 0.00155237 Species: Mus musculus Consensus sequence (original motif): DVDDATGGGATGKMDDV Consensus sequence (reverse complement motif): BDDYYCATCCCATDDBD Alignment: DVDDATGGGATGKMDDV --------GATGGCTC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_primary Reverse Complement Reverse Complement Forward 8 8 0.00582365 Species: Mus musculus Consensus sequence (original motif): HADTBVADGATGCATCMTGMVHB Consensus sequence (reverse complement motif): VHVRCAYGATGCATCDTVVADTH Alignment: VHVRCAYGATGCATCDTVVADTH -------GAGCCATC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00103 Jundm2_secondary Reverse Complement Reverse Complement Backward 4 8 0.00695523 Species: Mus musculus Consensus sequence (original motif): VDKDRTGASTCAYHDH Consensus sequence (reverse complement motif): HDDKTGASTCAKHRDB Alignment: HDDKTGASTCAKHRDB -----GAGCCATC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_primary Reverse Complement Original Motif Forward 4 8 0.00724333 Species: Mus musculus Consensus sequence (original motif): DBBATGCCAACCHVHH Consensus sequence (reverse complement motif): DDBHGGTTGGCATVBD Alignment: DBBATGCCAACCHVHH ---GAGCCATC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 13 Motif name: Motif 13 Consensus sequence (original motif): CAGYDCC Consensus sequence (reverse complement motif): GGDKCTG ************************************************************************ Best Matches for Motif ID 13 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00205 Pknox2 Original Motif Reverse Complement Backward 3 7 0.0202873 Species: Mus musculus Consensus sequence (original motif): HAVSRSCTGTCAATHB Consensus sequence (reverse complement motif): VHATTGACAGSKSVTH Alignment: VHATTGACAGSKSVTH -------CAGYDCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00122 Tgif1 Original Motif Original Motif Backward 3 7 0.022836 Species: Mus musculus Consensus sequence (original motif): DABWWTGACAGCTVVBD Consensus sequence (reverse complement motif): DBVVAGCTGTCAWWVTH Alignment: DABWWTGACAGCTVVBD --------CAGYDCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00258 Tgif2 Original Motif Reverse Complement Backward 3 7 0.0283472 Species: Mus musculus Consensus sequence (original motif): AABBAGCTGTCAAWVV Consensus sequence (reverse complement motif): VBWTTGACAGCTVBTT Alignment: VBWTTGACAGCTVBTT -------CAGYDCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00203 Pknox1 Original Motif Reverse Complement Backward 3 7 0.0289437 Species: Mus musculus Consensus sequence (original motif): DRVSASCTGTCAAWVV Consensus sequence (reverse complement motif): VVWTTGACAGSTSBKD Alignment: VVWTTGACAGSTSBKD -------CAGYDCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_2205.1 Original Motif Reverse Complement Forward 9 7 0.0291958 Species: Mus musculus Consensus sequence (original motif): AVDHCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGHHVT Alignment: WVVHWTWACAGCGHHVT --------CAGYDCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 14 Motif name: Motif 14 Consensus sequence (original motif): TSTGTR Consensus sequence (reverse complement motif): MACASA ************************************************************************ Best Matches for Motif ID 14 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_secondary Original Motif Reverse Complement Backward 6 6 0 Species: Mus musculus Consensus sequence (original motif): HVHRGCACACAAHHHV Consensus sequence (reverse complement motif): BHHHTTGTGTGCKHVD Alignment: BHHHTTGTGTGCKHVD -----TSTGTR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Reverse Complement Original Motif Backward 6 6 0.00200057 Species: Mus musculus Consensus sequence (original motif): DVMVGCACACACKCVH Consensus sequence (reverse complement motif): HBGYGTGTGTGCVRVD Alignment: DVMVGCACACACKCVH -----MACASA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_primary Reverse Complement Original Motif Backward 4 6 0.0148405 Species: Mus musculus Consensus sequence (original motif): DHVDTGTGCACAYAHDH Consensus sequence (reverse complement motif): HDHTMTGTGCACADVHD Alignment: DHVDTGTGCACAYAHDH --------MACASA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_primary Reverse Complement Original Motif Forward 9 6 0.0236149 Species: Mus musculus Consensus sequence (original motif): HHDATGTGCACATAMDH Consensus sequence (reverse complement motif): HHRTATGTGCACATHHD Alignment: HHDATGTGCACATAMDH --------MACASA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00041 Foxj1_primary Reverse Complement Original Motif Forward 7 6 0.0266195 Species: Mus musculus Consensus sequence (original motif): HDHRTAAACAAAHDDD Consensus sequence (reverse complement motif): DDDHTTTGTTTAMHDH Alignment: HDHRTAAACAAAHDDD ------MACASA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 15 Motif name: Motif 15 Consensus sequence (original motif): GCTCTTAA Consensus sequence (reverse complement motif): TTAAGAGC ************************************************************************ Best Matches for Motif ID 15 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00173 Hoxc13 Reverse Complement Reverse Complement Forward 6 8 0 Species: Mus musculus Consensus sequence (original motif): HHDBCTCRTAAAAWHD Consensus sequence (reverse complement motif): DHWTTTTAMGAGBDHH Alignment: DHWTTTTAMGAGBDHH -----TTAAGAGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00183 Hoxa13 Reverse Complement Reverse Complement Backward 4 8 0.00510293 Species: Mus musculus Consensus sequence (original motif): HDHBCTCGTAAAAWBD Consensus sequence (reverse complement motif): DVWTTTTACGAGBHDH Alignment: DVWTTTTACGAGBHDH -----TTAAGAGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00228 Bapx1 Reverse Complement Reverse Complement Backward 6 8 0.0182341 Species: Mus musculus Consensus sequence (original motif): VHHAACCACTTAAVVAH Consensus sequence (reverse complement motif): DTBVTTAAGTGGTTHHV Alignment: DTBVTTAAGTGGTTHHV ----TTAAGAGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00135 Hoxc12 Reverse Complement Reverse Complement Backward 4 8 0.0206445 Species: Mus musculus Consensus sequence (original motif): HHRGGTCGTAAAWHBDH Consensus sequence (reverse complement motif): DDVHWTTTACGACCKHH Alignment: DDVHWTTTACGACCKHH ------TTAAGAGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00177 Hoxd12 Reverse Complement Reverse Complement Forward 7 8 0.023305 Species: Mus musculus Consensus sequence (original motif): HHDVGTCGTAAAAHHHD Consensus sequence (reverse complement motif): DHDHTTTTACGACVDHD Alignment: DHDHTTTTACGACVDHD ------TTAAGAGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 16 Motif name: Motif 16 Consensus sequence (original motif): GGAAGRR Consensus sequence (reverse complement motif): MMCTTCC ************************************************************************ Best Matches for Motif ID 16 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Reverse Complement Reverse Complement Forward 2 7 0 Species: Mus musculus Consensus sequence (original motif): BWAHSMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRSDTWV Alignment: DWACTTCCRSDTWV -MMCTTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_primary Reverse Complement Reverse Complement Backward 8 7 0.00097547 Species: Mus musculus Consensus sequence (original motif): HVHHACCGGAAGTDHHV Consensus sequence (reverse complement motif): BHHHACTTCCGGTHHBD Alignment: BHHHACTTCCGGTHHBD ---MMCTTCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00420 Elk3 Reverse Complement Reverse Complement Forward 4 7 0.00131169 Species: Mus musculus Consensus sequence (original motif): DVBBACCGGAAGYDVVV Consensus sequence (reverse complement motif): VBVDMCTTCCGGTVBVD Alignment: VBVDMCTTCCGGTVBVD ---MMCTTCC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00419 Spic Reverse Complement Reverse Complement Forward 2 7 0.00204701 Species: Mus musculus Consensus sequence (original motif): VAAAGMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRCTTTB Alignment: DWACTTCCRCTTTB -MMCTTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Reverse Complement Original Motif Backward 7 7 0.00230178 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGDWDB Consensus sequence (reverse complement motif): BDWDCCGGAAGTHBBD Alignment: DBBHACTTCCGGDWDB ---MMCTTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 17 Motif name: Motif 17 Consensus sequence (original motif): CCDCCTCC Consensus sequence (reverse complement motif): GGAGGDGG ************************************************************************ Best Matches for Motif ID 17 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Reverse Complement Reverse Complement Backward 5 8 0.00331161 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD ---GGAGGDGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Original Motif Forward 2 8 0.00990566 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB -CCDCCTCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Original Motif Backward 6 8 0.0127556 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB ----CCDCCTCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Reverse Complement Reverse Complement Forward 6 8 0.0192546 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: BHHDYGGGGGGGGBVD -----GGAGGDGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Forward 10 8 0.0193256 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH ---------CCDCCTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 18 Motif name: Motif 18 Consensus sequence (original motif): CATGYATG Consensus sequence (reverse complement motif): CATKCATG ************************************************************************ Best Matches for Motif ID 18 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00236 Irx2 Original Motif Reverse Complement Backward 3 8 0.0094584 Species: Mus musculus Consensus sequence (original motif): WDDDTACATGTADDWBW Consensus sequence (reverse complement motif): WVWDDTACATGTADDDW Alignment: WVWDDTACATGTADDDW -------CATGYATG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00051 Sox8_secondary Reverse Complement Original Motif Backward 6 8 0.0108518 Species: Mus musculus Consensus sequence (original motif): DHATTCATGHVABV Consensus sequence (reverse complement motif): VBTVHCATGAATDD Alignment: DHATTCATGHVABV -CATKCATG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_primary Reverse Complement Reverse Complement Backward 7 8 0.0133688 Species: Mus musculus Consensus sequence (original motif): HHDWTSAATGAATDDB Consensus sequence (reverse complement motif): VDHATTCATTSAWDDH Alignment: VDHATTCATTSAWDDH --CATKCATG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_2226.1 Original Motif Reverse Complement Forward 8 8 0.0143625 Species: Mus musculus Consensus sequence (original motif): DDDHTACATGTAVWDHD Consensus sequence (reverse complement motif): DHDWBTACATGTAHDDD Alignment: DHDWBTACATGTAHDDD -------CATGYATG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_0920.1 Original Motif Reverse Complement Forward 8 8 0.0163294 Species: Mus musculus Consensus sequence (original motif): DDDDTACATGTAVWWHD Consensus sequence (reverse complement motif): DDWWBTACATGTADDDD Alignment: DDWWBTACATGTADDDD -------CATGYATG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 19 Motif name: Motif 19 Consensus sequence (original motif): CAGSCAG Consensus sequence (reverse complement motif): CTGSCTG ************************************************************************ Best Matches for Motif ID 19 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Original Motif Original Motif Backward 5 7 0 Species: Mus musculus Consensus sequence (original motif): HDHDDCCAGACABBHVH Consensus sequence (reverse complement motif): HVHBVTGTCTGGDDHDD Alignment: HDHDDCCAGACABBHVH ------CAGSCAG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_secondary Reverse Complement Reverse Complement Forward 4 7 0.0064943 Species: Mus musculus Consensus sequence (original motif): DDDCACAGCAKGHVD Consensus sequence (reverse complement motif): DVHCYTGCTGTGHDH Alignment: DVHCYTGCTGTGHDH ---CTGSCTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Reverse Complement Reverse Complement Backward 6 7 0.00786726 Species: Mus musculus Consensus sequence (original motif): HHDCVCAGCAKGVVD Consensus sequence (reverse complement motif): DVBCYTGCTGBGDDD Alignment: DVBCYTGCTGBGDDD ---CTGSCTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00092 Myb_secondary Original Motif Reverse Complement Backward 8 7 0.0123596 Species: Mus musculus Consensus sequence (original motif): BDACCAACTGCCRBBH Consensus sequence (reverse complement motif): DBVKGGCAGTTGGTHB Alignment: DBVKGGCAGTTGGTHB --CAGSCAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_secondary Reverse Complement Reverse Complement Forward 4 7 0.0127545 Species: Mus musculus Consensus sequence (original motif): BHDCVCAGCAGGHVD Consensus sequence (reverse complement motif): DVHCCTGCTGBGDDB Alignment: DVHCCTGCTGBGDDB ---CTGSCTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 20 Motif name: Motif 20 Consensus sequence (original motif): CACGTR Consensus sequence (reverse complement motif): MACGTG ************************************************************************ Best Matches for Motif ID 20 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Reverse Complement Backward 9 6 0 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM --------CACGTR-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Reverse Complement Backward 5 6 0.00504882 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: HHVBABCACGTGSTHD ------CACGTR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Reverse Complement Backward 9 6 0.0050835 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM ---------CACGTR-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Reverse Complement Forward 7 6 0.0336216 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB ------CACGTR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Original Motif Original Motif Backward 6 6 0.0339468 Species: Mus musculus Consensus sequence (original motif): HDADCCACTTRAAWTT Consensus sequence (reverse complement motif): AAWTTMAAGTGGHTDH Alignment: HDADCCACTTRAAWTT -----CACGTR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 21 Motif name: Motif 21 Consensus sequence (original motif): CCACYAGG Consensus sequence (reverse complement motif): CCTKGTGG ************************************************************************ Best Matches for Motif ID 21 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Original Motif Reverse Complement Backward 7 8 0 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB ---------CCACYAGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Reverse Complement Reverse Complement Backward 11 8 0.00212209 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH ----CCTKGTGG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Reverse Complement Reverse Complement Forward 5 8 0.00654113 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: CVHBSCGGGTGGTCMHVHHCDH ----CCTKGTGG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_secondary Original Motif Original Motif Backward 3 8 0.00890824 Species: Mus musculus Consensus sequence (original motif): BDDRVGACCACCHBDVB Consensus sequence (reverse complement motif): BBDVHGGTGGTCBKDDB Alignment: BDDRVGACCACCHBDVB -------CCACYAGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_secondary Reverse Complement Reverse Complement Forward 4 8 0.0167011 Species: Mus musculus Consensus sequence (original motif): BHDCVCAGCAGGHVD Consensus sequence (reverse complement motif): DVHCCTGCTGBGDDB Alignment: DVHCCTGCTGBGDDB ---CCTKGTGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 22 Motif name: Motif 22 Consensus sequence (original motif): CAGATYCC Consensus sequence (reverse complement motif): GGKATCTG ************************************************************************ Best Matches for Motif ID 22 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00232 Dobox4 Reverse Complement Reverse Complement Forward 6 8 0 Species: Mus musculus Consensus sequence (original motif): HWHWTAGATACCCYWTD Consensus sequence (reverse complement motif): DAWKGGGTATCTAWHWH Alignment: DAWKGGGTATCTAWHWH -----GGKATCTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00159 Six2 Reverse Complement Original Motif Backward 5 8 0.0241128 Species: Mus musculus Consensus sequence (original motif): DAKRGGGTATCACDWHT Consensus sequence (reverse complement motif): AHWDGTGATACCCMRTD Alignment: DAKRGGGTATCACDWHT -----GGKATCTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00388 Six6_2267.4 Reverse Complement Original Motif Forward 6 8 0.0250604 Species: Mus musculus Consensus sequence (original motif): DATRGGGTATCAHDWHT Consensus sequence (reverse complement motif): AHWDHTGATACCCKATD Alignment: DATRGGGTATCAHDWHT -----GGKATCTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00195 Six3 Reverse Complement Original Motif Forward 6 8 0.0259075 Species: Mus musculus Consensus sequence (original motif): DATRGGGTATCAHHWHT Consensus sequence (reverse complement motif): AHWHDTGATACCCKATH Alignment: DATRGGGTATCAHHWHT -----GGKATCTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00192 Six1 Reverse Complement Original Motif Forward 6 8 0.0264035 Species: Mus musculus Consensus sequence (original motif): DHDRGGGTATCAHDHBT Consensus sequence (reverse complement motif): AVHDHTGATACCCMDHH Alignment: DHDRGGGTATCAHDHBT -----GGKATCTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 23 Motif name: Motif 23 Consensus sequence (original motif): GASAGAGA Consensus sequence (reverse complement motif): TCTCTSTC ************************************************************************ Best Matches for Motif ID 23 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Reverse Complement Backward 5 8 0 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: HBHDVHDTCTTATCTHTDDHDV ----------TCTCTSTC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00040 Irf5_secondary Original Motif Original Motif Forward 3 8 0.00356941 Species: Mus musculus Consensus sequence (original motif): BHDAHCGAGARTHBV Consensus sequence (reverse complement motif): VBHAKTCTCGHTHHV Alignment: BHDAHCGAGARTHBV --GASAGAGA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00258 Tgif2 Reverse Complement Original Motif Backward 6 8 0.0059307 Species: Mus musculus Consensus sequence (original motif): AABBAGCTGTCAAWVV Consensus sequence (reverse complement motif): VBWTTGACAGCTVBTT Alignment: AABBAGCTGTCAAWVV ---TCTCTSTC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00080 Gata5_secondary Reverse Complement Reverse Complement Forward 8 8 0.00994332 Species: Mus musculus Consensus sequence (original motif): VVBHRAGATATCWDHBB Consensus sequence (reverse complement motif): VVHHWGATATCTMHBBV Alignment: VVHHWGATATCTMHBBV -------TCTCTSTC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00186 Meis1 Reverse Complement Original Motif Forward 4 8 0.0114008 Species: Mus musculus Consensus sequence (original motif): WAVBASCTGTCAAWVH Consensus sequence (reverse complement motif): DBWTTGACAGSTBVTW Alignment: WAVBASCTGTCAAWVH ---TCTCTSTC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 24 Motif name: Motif 24 Consensus sequence (original motif): TGTGGGTG Consensus sequence (reverse complement motif): CACCCACA ************************************************************************ Best Matches for Motif ID 24 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Reverse Complement Original Motif Forward 12 8 0 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: ABBBBVVRGACCACCCACRDBBM -----------CACCCACA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_primary Original Motif Reverse Complement Forward 6 8 0.00199912 Species: Mus musculus Consensus sequence (original motif): HVVHACCCGCATVDHD Consensus sequence (reverse complement motif): DHDVATGCGGGTHVVH Alignment: DHDVATGCGGGTHVVH -----TGTGGGTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Reverse Complement Original Motif Backward 6 8 0.00682225 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH ----------CACCCACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Reverse Complement Original Motif Forward 11 8 0.0105432 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DTVBDDRGACCACCCAGDWDGBH ----------CACCCACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_secondary Reverse Complement Original Motif Backward 6 8 0.011455 Species: Mus musculus Consensus sequence (original motif): DKKWDACCCCCAHTDDV Consensus sequence (reverse complement motif): VDDAHTGGGGGTHWYYD Alignment: DKKWDACCCCCAHTDDV ----CACCCACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 25 Motif name: Motif 25 Consensus sequence (original motif): CTGRGTTC Consensus sequence (reverse complement motif): GAACKCAG ************************************************************************ Best Matches for Motif ID 25 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00019 Zbtb12_primary Original Motif Original Motif Backward 9 8 0.015191 Species: Mus musculus Consensus sequence (original motif): BDHRBGTTCTAGATCVB Consensus sequence (reverse complement motif): BBGATCTAGAACBKHDB Alignment: BDHRBGTTCTAGATCVB -CTGRGTTC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_secondary Reverse Complement Original Motif Backward 8 8 0.0235944 Species: Mus musculus Consensus sequence (original motif): DDDCACAGCAKGHVD Consensus sequence (reverse complement motif): DVHCYTGCTGTGHDH Alignment: DDDCACAGCAKGHVD GAACKCAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_secondary Reverse Complement Original Motif Backward 8 8 0.0252114 Species: Mus musculus Consensus sequence (original motif): BHDCVCAGCAGGHVD Consensus sequence (reverse complement motif): DVHCCTGCTGBGDDB Alignment: BHDCVCAGCAGGHVD GAACKCAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_primary Original Motif Original Motif Forward 4 8 0.0255154 Species: Mus musculus Consensus sequence (original motif): BDBVMGGGGTCAABHDV Consensus sequence (reverse complement motif): BHHVTTGACCCCYVVDB Alignment: BDBVMGGGGTCAABHDV ---CTGRGTTC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00148 Hdx Original Motif Reverse Complement Forward 5 8 0.0260414 Species: Mus musculus Consensus sequence (original motif): DDKDHGAAATCAHHBHV Consensus sequence (reverse complement motif): BDBDHTGATTTCDHYDD Alignment: BDBDHTGATTTCDHYDD ----CTGRGTTC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 26 Motif name: Motif 26 Consensus sequence (original motif): CAGAGGAY Consensus sequence (reverse complement motif): KTCCTCTG ************************************************************************ Best Matches for Motif ID 26 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Original Motif Forward 6 8 0 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: HVDDVCAGATGKYHBBV -----CAGAGGAY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Reverse Complement Original Motif Backward 8 8 0.00361871 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: DDDYCCTTTGATCTDDV --KTCCTCTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Reverse Complement Original Motif Backward 8 8 0.00571944 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: DDDYCCTTTGATSTDDV --KTCCTCTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Reverse Complement Reverse Complement Backward 8 8 0.00988532 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HHBTMCTTTGTTMDDVH --KTCCTCTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Reverse Complement Reverse Complement Forward 3 8 0.0118578 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HHBBMCTTTGTTHDDBH --KTCCTCTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 27 Motif name: Motif 27 Consensus sequence (original motif): CSGCCGCC Consensus sequence (reverse complement motif): GGCGGCSG ************************************************************************ Best Matches for Motif ID 27 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Original Motif Forward 2 8 0.012469 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB -CSGCCGCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Original Motif Backward 6 8 0.012605 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB ----CSGCCGCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Original Motif Reverse Complement Forward 6 8 0.024557 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: TCDAMVBGACGCMAKDDDVBBD -----CSGCCGCC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Original Motif Backward 7 8 0.0251911 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB ---CSGCCGCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Original Motif Forward 5 8 0.026934 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC ----CSGCCGCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 28 Motif name: Motif 28 Consensus sequence (original motif): CTTCCTG Consensus sequence (reverse complement motif): CAGGAAG ************************************************************************ Best Matches for Motif ID 28 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Original Motif Original Motif Backward 5 7 0 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGKWTH Consensus sequence (reverse complement motif): HAWYCCGGAAGTHBBD Alignment: DBBHACTTCCGGKWTH -----CTTCCTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Original Motif Original Motif Forward 6 7 0.00352958 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGDWDB Consensus sequence (reverse complement motif): BDWDCCGGAAGTHBBD Alignment: DBBHACTTCCGGDWDB -----CTTCCTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_primary Reverse Complement Original Motif Backward 6 7 0.00394394 Species: Mus musculus Consensus sequence (original motif): HVHHACCGGAAGTDHHV Consensus sequence (reverse complement motif): BHHHACTTCCGGTHHBD Alignment: HVHHACCGGAAGTDHHV -----CAGGAAG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00420 Elk3 Reverse Complement Original Motif Backward 6 7 0.00419952 Species: Mus musculus Consensus sequence (original motif): DVBBACCGGAAGYDVVV Consensus sequence (reverse complement motif): VBVDMCTTCCGGTVBVD Alignment: DVBBACCGGAAGYDVVV -----CAGGAAG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00410 Elk1 Reverse Complement Original Motif Forward 6 7 0.006051 Species: Mus musculus Consensus sequence (original motif): VVHBACCGGAAGTDBHD Consensus sequence (reverse complement motif): DHBDACTTCCGGTVHVB Alignment: VVHBACCGGAAGTDBHD -----CAGGAAG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 29 Motif name: Motif 29 Consensus sequence (original motif): CATTTCY Consensus sequence (reverse complement motif): MGAAATG ************************************************************************ Best Matches for Motif ID 29 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00411 Erg Original Motif Original Motif Forward 4 7 0 Species: Mus musculus Consensus sequence (original motif): VBBVAYTTCCGGTDDB Consensus sequence (reverse complement motif): BDDACCGGAAKTVBVB Alignment: VBBVAYTTCCGGTDDB ---CATTTCY------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00424 Gm4881 Original Motif Original Motif Forward 4 7 3.61876e-06 Species: Mus musculus Consensus sequence (original motif): VBBHAYTTCCGGTDDD Consensus sequence (reverse complement motif): DHDACCGGAAMTHBVB Alignment: VBBHAYTTCCGGTDDD ---CATTTCY------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00148 Hdx Reverse Complement Original Motif Forward 5 7 0.000285971 Species: Mus musculus Consensus sequence (original motif): DDKDHGAAATCAHHBHV Consensus sequence (reverse complement motif): BDBDHTGATTTCDHYDD Alignment: DDKDHGAAATCAHHBHV ----MGAAATG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00418 Etv6 Original Motif Original Motif Forward 5 7 0.00137994 Species: Mus musculus Consensus sequence (original motif): DVHBTACTTCCGGHTHB Consensus sequence (reverse complement motif): BHAHCCGGAAGTABDVD Alignment: DVHBTACTTCCGGHTHB ----CATTTCY------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00422 Etv3 Original Motif Original Motif Forward 4 7 0.00221043 Species: Mus musculus Consensus sequence (original motif): VBBHAYTTCCGGTHDH Consensus sequence (reverse complement motif): DHHACCGGAAKTHBBB Alignment: VBBHAYTTCCGGTHDH ---CATTTCY------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 30 Motif name: Motif 30 Consensus sequence (original motif): CWGCAGC Consensus sequence (reverse complement motif): GCTGCWG ************************************************************************ Best Matches for Motif ID 30 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00052 Osr2_primary Reverse Complement Reverse Complement Forward 5 7 0 Species: Mus musculus Consensus sequence (original motif): HHVHACRGTAGCHHHD Consensus sequence (reverse complement motif): HHHHGCTACKGTHVHH Alignment: HHHHGCTACKGTHVHH ----GCTGCWG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00027 Osr1_primary Reverse Complement Reverse Complement Backward 6 7 0.00152865 Species: Mus musculus Consensus sequence (original motif): HHDHACRGTAGCHVHD Consensus sequence (reverse complement motif): DHBHGCTACKGTHDHH Alignment: DHBHGCTACKGTHDHH ----GCTGCWG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Original Motif Reverse Complement Backward 8 7 0.00352181 Species: Mus musculus Consensus sequence (original motif): BBYVVCAGCTGCBVHHD Consensus sequence (reverse complement motif): HHDVVGCAGCTGVBKVB Alignment: HHDVVGCAGCTGVBKVB ---CWGCAGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_secondary Reverse Complement Reverse Complement Forward 4 7 0.0201867 Species: Mus musculus Consensus sequence (original motif): BHDCVCAGCAGGHVD Consensus sequence (reverse complement motif): DVHCCTGCTGBGDDB Alignment: DVHCCTGCTGBGDDB ---GCTGCWG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Original Motif Original Motif Forward 6 7 0.0241363 Species: Mus musculus Consensus sequence (original motif): HHDCVCAGCAKGVVD Consensus sequence (reverse complement motif): DVBCYTGCTGBGDDD Alignment: HHDCVCAGCAKGVVD -----CWGCAGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 31 Motif name: Motif 31 Consensus sequence (original motif): CATGYACA Consensus sequence (reverse complement motif): TGTKCATG ************************************************************************ Best Matches for Motif ID 31 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00150 Irx6 Original Motif Original Motif Backward 4 8 0.00505399 Species: Mus musculus Consensus sequence (original motif): HAHDTACATGTAVDWHT Consensus sequence (reverse complement motif): AHWDBTACATGTADHTH Alignment: HAHDTACATGTAVDWHT ------CATGYACA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Original Motif Reverse Complement Forward 3 8 0.00507655 Species: Mus musculus Consensus sequence (original motif): DBDHCGTGTGCAAMDH Consensus sequence (reverse complement motif): HDYTTGCACACGDHBH Alignment: HDYTTGCACACGDHBH --CATGYACA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_2226.1 Original Motif Reverse Complement Forward 8 8 0.00836655 Species: Mus musculus Consensus sequence (original motif): DDDHTACATGTAVWDHD Consensus sequence (reverse complement motif): DHDWBTACATGTAHDDD Alignment: DHDWBTACATGTAHDDD -------CATGYACA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00179 Pou2f3 Original Motif Original Motif Backward 6 8 0.00847056 Species: Mus musculus Consensus sequence (original motif): BHDTATGCAAATBHDV Consensus sequence (reverse complement motif): BHHVATTTGCATAHHV Alignment: BHDTATGCAAATBHDV ---CATGYACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00191 Pou2f2 Original Motif Original Motif Forward 4 8 0.00973489 Species: Mus musculus Consensus sequence (original motif): BHDTATGCAAATDHDV Consensus sequence (reverse complement motif): BHHDATTTGCATAHHV Alignment: BHDTATGCAAATDHDV ---CATGYACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 32 Motif name: Motif 32 Consensus sequence (original motif): KAATAAA Consensus sequence (reverse complement motif): TTTATTY ************************************************************************ Best Matches for Motif ID 32 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Original Motif Original Motif Backward 6 7 0 Species: Mus musculus Consensus sequence (original motif): HDHYYAATAAAAHHHH Consensus sequence (reverse complement motif): HDHHTTTTATTKKHDD Alignment: HDHYYAATAAAAHHHH ----KAATAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00133 Cdx2 Reverse Complement Reverse Complement Backward 6 7 0.000531578 Species: Mus musculus Consensus sequence (original motif): DVVGGYMATAAAAHKH Consensus sequence (reverse complement motif): HRHTTTTATYMCCVBD Alignment: HRHTTTTATYMCCVBD ----TTTATTY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Original Motif Original Motif Backward 6 7 0.00373425 Species: Mus musculus Consensus sequence (original motif): VRHCCAATAAAAWHHV Consensus sequence (reverse complement motif): VDHWTTTTATTGGDKB Alignment: VRHCCAATAAAAWHHV ----KAATAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Reverse Complement Forward 7 7 0.00617561 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB ------TTTATTY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00217 Hoxa10 Original Motif Original Motif Backward 6 7 0.00873461 Species: Mus musculus Consensus sequence (original motif): DHBGYAATAAAATDHW Consensus sequence (reverse complement motif): WDDATTTTATTMCBHD Alignment: DHBGYAATAAAATDHW ----KAATAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 33 Motif name: Motif 33 Consensus sequence (original motif): CTGGCTWC Consensus sequence (reverse complement motif): GWAGCCAG ************************************************************************ Best Matches for Motif ID 33 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Reverse Complement Reverse Complement Forward 8 8 0 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: TCDAMVBGACGCMAKDDDVBBD -------GWAGCCAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Reverse Complement Reverse Complement Forward 3 8 0.00527751 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: DMTWDGTCAGCADWTTH --GWAGCCAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Reverse Complement Original Motif Forward 2 8 0.0073813 Species: Mus musculus Consensus sequence (original motif): HDHDDCCAGACABBHVH Consensus sequence (reverse complement motif): HVHBVTGTCTGGDDHDD Alignment: HDHDDCCAGACABBHVH -GWAGCCAG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00052 Osr2_primary Reverse Complement Original Motif Backward 2 8 0.00888762 Species: Mus musculus Consensus sequence (original motif): HHVHACRGTAGCHHHD Consensus sequence (reverse complement motif): HHHHGCTACKGTHVHH Alignment: HHVHACRGTAGCHHHD -------GWAGCCAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00027 Osr1_primary Reverse Complement Original Motif Backward 2 8 0.00951832 Species: Mus musculus Consensus sequence (original motif): HHDHACRGTAGCHVHD Consensus sequence (reverse complement motif): DHBHGCTACKGTHDHH Alignment: HHDHACRGTAGCHVHD -------GWAGCCAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 34 Motif name: Motif 34 Consensus sequence (original motif): TGKCCACA Consensus sequence (reverse complement motif): TGTGGYCA ************************************************************************ Best Matches for Motif ID 34 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_primary Original Motif Reverse Complement Backward 5 8 0 Species: Mus musculus Consensus sequence (original motif): DHVDTGTGCACAYAHDH Consensus sequence (reverse complement motif): HDHTMTGTGCACADVHD Alignment: HDHTMTGTGCACADVHD -----TGKCCACA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_primary Original Motif Reverse Complement Backward 5 8 0.00132554 Species: Mus musculus Consensus sequence (original motif): HHDATGTGCACATAMDH Consensus sequence (reverse complement motif): HHRTATGTGCACATHHD Alignment: HHRTATGTGCACATHHD -----TGKCCACA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Reverse Complement Reverse Complement Backward 7 8 0.0066252 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DBCDWHCTGGGTGGTCMDHBBAH ---------TGTGGYCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Reverse Complement Reverse Complement Forward 10 8 0.00683926 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BTBVTCVTGGGTGGTCMVVDVBB ---------TGTGGYCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Reverse Complement Reverse Complement Forward 5 8 0.00716059 Species: Mus musculus Consensus sequence (original motif): DBHBDTGACCCCDHVHB Consensus sequence (reverse complement motif): VHBHDGGGGTCAHBHBD Alignment: VHBHDGGGGTCAHBHBD ----TGTGGYCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 35 Motif name: Motif 35 Consensus sequence (original motif): ACAACCAY Consensus sequence (reverse complement motif): KTGGTTGT ************************************************************************ Best Matches for Motif ID 35 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_secondary Original Motif Original Motif Forward 7 8 0 Species: Mus musculus Consensus sequence (original motif): BDDRVGACCACCHBDVB Consensus sequence (reverse complement motif): BBDVHGGTGGTCBKDDB Alignment: BDDRVGACCACCHBDVB ------ACAACCAY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00227 Duxl Reverse Complement Reverse Complement Forward 6 8 0.00363031 Species: Mus musculus Consensus sequence (original motif): YRACCCAATCAACVVHV Consensus sequence (reverse complement motif): VHVVGTTGATTGGGTMK Alignment: VHVVGTTGATTGGGTMK -----KTGGTTGT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00166 Barhl1 Reverse Complement Reverse Complement Forward 8 8 0.00780833 Species: Mus musculus Consensus sequence (original motif): HAHAACCAATTARBDH Consensus sequence (reverse complement motif): DDVKTAATTGGTTDTH Alignment: DDVKTAATTGGTTDTH -------KTGGTTGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Reverse Complement Reverse Complement Backward 10 8 0.0118241 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT ------KTGGTTGT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Reverse Complement Reverse Complement Forward 6 8 0.0118666 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH -----KTGGTTGT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 36 Motif name: Motif 36 Consensus sequence (original motif): TCCTGGRA Consensus sequence (reverse complement motif): TMCCAGGA ************************************************************************ Best Matches for Motif ID 36 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_primary Original Motif Reverse Complement Backward 4 8 0 Species: Mus musculus Consensus sequence (original motif): DCTTTCKAGGAATHHV Consensus sequence (reverse complement motif): VHHATTCCTYGAAAGD Alignment: VHHATTCCTYGAAAGD -----TCCTGGRA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00038 Spdef_secondary Reverse Complement Reverse Complement Forward 2 8 0.00573581 Species: Mus musculus Consensus sequence (original motif): DDBHACATCCTAKWDV Consensus sequence (reverse complement motif): VDWYTAGGATGTHVDH Alignment: VDWYTAGGATGTHVDH -TMCCAGGA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Original Motif Reverse Complement Forward 3 8 0.00675491 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGKWTH Consensus sequence (reverse complement motif): HAWYCCGGAAGTHBBD Alignment: HAWYCCGGAAGTHBBD --TCCTGGRA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_primary Reverse Complement Reverse Complement Forward 8 8 0.0109341 Species: Mus musculus Consensus sequence (original motif): DVDDATGGGATGKMDDV Consensus sequence (reverse complement motif): BDDYYCATCCCATDDBD Alignment: BDDYYCATCCCATDDBD -------TMCCAGGA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00410 Elk1 Original Motif Reverse Complement Backward 3 8 0.012227 Species: Mus musculus Consensus sequence (original motif): VVHBACCGGAAGTDBHD Consensus sequence (reverse complement motif): DHBDACTTCCGGTVHVB Alignment: DHBDACTTCCGGTVHVB -------TCCTGGRA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 37 Motif name: Motif 37 Consensus sequence (original motif): CTGAGCYA Consensus sequence (reverse complement motif): TKGCTCAG ************************************************************************ Best Matches for Motif ID 37 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Reverse Complement Reverse Complement Backward 8 8 0 Species: Mus musculus Consensus sequence (original motif): HDTBHHCCHTAGCAACVVDHHHH Consensus sequence (reverse complement motif): HHHHDVVGTTGCTAHGGDHBAHH Alignment: HHHHDVVGTTGCTAHGGDHBAHH --------TKGCTCAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00103 Jundm2_secondary Reverse Complement Reverse Complement Backward 5 8 0.00321157 Species: Mus musculus Consensus sequence (original motif): VDKDRTGASTCAYHDH Consensus sequence (reverse complement motif): HDDKTGASTCAKHRDB Alignment: HDDKTGASTCAKHRDB ----TKGCTCAG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00076 Rfxdc2_primary Reverse Complement Reverse Complement Forward 5 8 0.00414765 Species: Mus musculus Consensus sequence (original motif): BBVCHTAGCAACSVD Consensus sequence (reverse complement motif): DVSGTTGCTAHGVBB Alignment: DVSGTTGCTAHGVBB ----TKGCTCAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00056 Rfx4_primary Reverse Complement Reverse Complement Backward 4 8 0.00415736 Species: Mus musculus Consensus sequence (original motif): BHCCHTAGCAACSVD Consensus sequence (reverse complement motif): DVSGTTGCTAHGGHV Alignment: DVSGTTGCTAHGGHV ----TKGCTCAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Reverse Complement Reverse Complement Forward 3 8 0.0106486 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: DMTWDGTCAGCADWTTH --TKGCTCAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 38 Motif name: Motif 38 Consensus sequence (original motif): GAGTTACA Consensus sequence (reverse complement motif): TGTAACTC ************************************************************************ Best Matches for Motif ID 38 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00056 Rfx4_secondary Original Motif Original Motif Backward 3 8 0 Species: Mus musculus Consensus sequence (original motif): HHBCHTRGWTACVVH Consensus sequence (reverse complement motif): HVVGTAWCKADGBHH Alignment: HHBCHTRGWTACVVH -----GAGTTACA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00103 Jundm2_secondary Original Motif Original Motif Backward 3 8 0.00296274 Species: Mus musculus Consensus sequence (original motif): VDKDRTGASTCAYHDH Consensus sequence (reverse complement motif): HDDKTGASTCAKHRDB Alignment: VDKDRTGASTCAYHDH ------GAGTTACA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_1765.2 Reverse Complement Original Motif Backward 3 8 0.00944938 Species: Mus musculus Consensus sequence (original motif): AVDVCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGBHBT Alignment: AVDVCGCTGTWAWDVVW -------TGTAACTC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00205 Pknox2 Reverse Complement Original Motif Backward 2 8 0.00964683 Species: Mus musculus Consensus sequence (original motif): HAVSRSCTGTCAATHB Consensus sequence (reverse complement motif): VHATTGACAGSKSVTH Alignment: HAVSRSCTGTCAATHB -------TGTAACTC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00236 Irx2 Original Motif Reverse Complement Forward 2 8 0.00974779 Species: Mus musculus Consensus sequence (original motif): WDDDTACATGTADDWBW Consensus sequence (reverse complement motif): WVWDDTACATGTADDDW Alignment: WVWDDTACATGTADDDW -GAGTTACA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 39 Motif name: Motif 39 Consensus sequence (original motif): BAGAAA Consensus sequence (reverse complement motif): TTTCTB ************************************************************************ Best Matches for Motif ID 39 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00040 Irf5_primary Reverse Complement Reverse Complement Backward 6 6 0 Species: Mus musculus Consensus sequence (original motif): DDDWAYCGAAACYDV Consensus sequence (reverse complement motif): BDKGTTTCGKTWDDD Alignment: BDKGTTTCGKTWDDD ----TTTCTB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00018 Irf4_primary Original Motif Original Motif Forward 5 6 0.00208221 Species: Mus musculus Consensus sequence (original motif): VDDAYCGAAACYDVA Consensus sequence (reverse complement motif): TBDKGTTTCGMTDHV Alignment: VDDAYCGAAACYDVA ----BAGAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Original Motif Original Motif Forward 7 6 0.00450619 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: BDHDDADAGATAAGADHBDHVD ------BAGAAA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00074 Isgf3g_primary Reverse Complement Reverse Complement Backward 6 6 0.00517682 Species: Mus musculus Consensus sequence (original motif): VDRAAWCGAAACTDA Consensus sequence (reverse complement motif): TDAGTTTCGWTTKDV Alignment: TDAGTTTCGWTTKDV ----TTTCTB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00011 Irf6_primary Original Motif Original Motif Backward 8 6 0.00721031 Species: Mus musculus Consensus sequence (original motif): HDDAHCGAAACYAVDDD Consensus sequence (reverse complement motif): DHDBTKGTTTCGHTHDD Alignment: HDDAHCGAAACYAVDDD ----BAGAAA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 40 Motif name: Motif 40 Consensus sequence (original motif): ARTCCCAG Consensus sequence (reverse complement motif): CTGGGAMT ************************************************************************ Best Matches for Motif ID 40 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00216 Obox1 Original Motif Reverse Complement Backward 4 8 0 Species: Mus musculus Consensus sequence (original motif): DDARGGGGATTAACDHH Consensus sequence (reverse complement motif): DHDGTTAATCCCCKTDD Alignment: DHDGTTAATCCCCKTDD ------ARTCCCAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00229 Otx1 Original Motif Reverse Complement Forward 8 8 0.00997246 Species: Mus musculus Consensus sequence (original motif): DDDRGGGATTAATWHHB Consensus sequence (reverse complement motif): VHHWATTAATCCCMDHH Alignment: VHHWATTAATCCCMDHH -------ARTCCCAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00160 Obox3 Original Motif Reverse Complement Forward 7 8 0.0101137 Species: Mus musculus Consensus sequence (original motif): HBVGGGGGATTAACWHH Consensus sequence (reverse complement motif): HHWGTTAATCCCCCBBH Alignment: HHWGTTAATCCCCCBBH ------ARTCCCAG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_primary Original Motif Reverse Complement Backward 5 8 0.0101427 Species: Mus musculus Consensus sequence (original motif): DVDDATGGGATGKMDDV Consensus sequence (reverse complement motif): BDDYYCATCCCATDDBD Alignment: BDDYYCATCCCATDDBD -----ARTCCCAG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00208 Obox5_2284.1 Original Motif Reverse Complement Backward 3 8 0.0112114 Species: Mus musculus Consensus sequence (original motif): HDVRGGGATTAAHTHHH Consensus sequence (reverse complement motif): DHHAHTTAATCCCKVDH Alignment: DHHAHTTAATCCCKVDH -------ARTCCCAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 41 Motif name: Motif 41 Consensus sequence (original motif): CCTGCTGK Consensus sequence (reverse complement motif): YCAGCAGG ************************************************************************ Best Matches for Motif ID 41 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_secondary Original Motif Reverse Complement Forward 4 8 0 Species: Mus musculus Consensus sequence (original motif): BHDCVCAGCAGGHVD Consensus sequence (reverse complement motif): DVHCCTGCTGBGDDB Alignment: DVHCCTGCTGBGDDB ---CCTGCTGK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Original Motif Reverse Complement Backward 5 8 0.0043517 Species: Mus musculus Consensus sequence (original motif): HHDCVCAGCAKGVVD Consensus sequence (reverse complement motif): DVBCYTGCTGBGDDD Alignment: DVBCYTGCTGBGDDD ---CCTGCTGK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_secondary Original Motif Reverse Complement Backward 5 8 0.00761363 Species: Mus musculus Consensus sequence (original motif): DDDCACAGCAKGHVD Consensus sequence (reverse complement motif): DVHCYTGCTGTGHDH Alignment: DVHCYTGCTGTGHDH ---CCTGCTGK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Reverse Complement Reverse Complement Forward 7 8 0.0402767 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: DMTWDGTCAGCADWTTH ------YCAGCAGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Original Motif Forward 2 8 0.0490068 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD -YCAGCAGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 42 Motif name: Motif 42 Consensus sequence (original motif): CGCGCSG Consensus sequence (reverse complement motif): CSGCGCG ************************************************************************ Best Matches for Motif ID 42 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Reverse Complement Reverse Complement Backward 8 7 0 Species: Mus musculus Consensus sequence (original motif): VHDADGGCGCGCSHW Consensus sequence (reverse complement motif): WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB -CSGCGCG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_primary Original Motif Reverse Complement Forward 5 7 0.000129734 Species: Mus musculus Consensus sequence (original motif): VHDARGGCGCGCVHH Consensus sequence (reverse complement motif): HHVGCGCGCCKTDHB Alignment: HHVGCGCGCCKTDHB ----CGCGCSG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Original Motif Reverse Complement Forward 8 7 0.0145336 Species: Mus musculus Consensus sequence (original motif): DDGCGCGCGCRCHYRD Consensus sequence (reverse complement motif): DMMDGMGCGCGCGCHD Alignment: DMMDGMGCGCGCGCHD -------CGCGCSG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_secondary Reverse Complement Reverse Complement Backward 3 7 0.016879 Species: Mus musculus Consensus sequence (original motif): GYCGCGCARBGCVB Consensus sequence (reverse complement motif): VVGCVMTGCGCGKC Alignment: VVGCVMTGCGCGKC -----CSGCGCG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Reverse Complement Forward 8 7 0.0219936 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW -------CSGCGCG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 43 Motif name: Motif 43 Consensus sequence (original motif): ACATYTA Consensus sequence (reverse complement motif): TAMATGT ************************************************************************ Best Matches for Motif ID 43 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00236 Irx2 Reverse Complement Reverse Complement Backward 6 7 0 Species: Mus musculus Consensus sequence (original motif): WDDDTACATGTADDWBW Consensus sequence (reverse complement motif): WVWDDTACATGTADDDW Alignment: WVWDDTACATGTADDDW -----TAMATGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00150 Irx6 Reverse Complement Reverse Complement Backward 6 7 3.6652e-05 Species: Mus musculus Consensus sequence (original motif): HAHDTACATGTAVDWHT Consensus sequence (reverse complement motif): AHWDBTACATGTADHTH Alignment: AHWDBTACATGTADHTH -----TAMATGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_2226.1 Reverse Complement Reverse Complement Forward 6 7 0.000501187 Species: Mus musculus Consensus sequence (original motif): DDDHTACATGTAVWDHD Consensus sequence (reverse complement motif): DHDWBTACATGTAHDDD Alignment: DHDWBTACATGTAHDDD -----TAMATGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_0920.1 Reverse Complement Reverse Complement Backward 6 7 0.00389424 Species: Mus musculus Consensus sequence (original motif): DDDDTACATGTAVWWHD Consensus sequence (reverse complement motif): DDWWBTACATGTADDDD Alignment: DDWWBTACATGTADDDD -----TAMATGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00250 Irx5 Reverse Complement Reverse Complement Backward 6 7 0.0071841 Species: Mus musculus Consensus sequence (original motif): DDDHWACATGTWHDABW Consensus sequence (reverse complement motif): WVTDHWACATGTWHDDD Alignment: WVTDHWACATGTWHDDD -----TAMATGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 44 Motif name: Motif 44 Consensus sequence (original motif): GDAAACA Consensus sequence (reverse complement motif): TGTTTDC ************************************************************************ Best Matches for Motif ID 44 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_primary Original Motif Original Motif Backward 6 7 0 Species: Mus musculus Consensus sequence (original motif): DDAATGTAAACAAAVVB Consensus sequence (reverse complement motif): BBVTTTGTTTACATTDD Alignment: DDAATGTAAACAAAVVB -----GDAAACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Reverse Complement Reverse Complement Forward 6 7 0.00709733 Species: Mus musculus Consensus sequence (original motif): HHWAWGTAAAYAAAVDB Consensus sequence (reverse complement motif): BDVTTTKTTTACWTWHH Alignment: BDVTTTKTTTACWTWHH -----TGTTTDC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Original Motif Backward 6 7 0.00723594 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: DWAATRTAAACAAWVVB -----GDAAACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Original Motif Original Motif Backward 6 7 0.0079365 Species: Mus musculus Consensus sequence (original motif): HDHADGTAAACAAAVVH Consensus sequence (reverse complement motif): DVVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH -----GDAAACA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00041 Foxj1_primary Original Motif Original Motif Backward 7 7 0.0162324 Species: Mus musculus Consensus sequence (original motif): HDHRTAAACAAAHDDD Consensus sequence (reverse complement motif): DDDHTTTGTTTAMHDH Alignment: HDHRTAAACAAAHDDD ---GDAAACA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 45 Motif name: Motif 45 Consensus sequence (original motif): GSAGAGA Consensus sequence (reverse complement motif): TCTCTSC ************************************************************************ Best Matches for Motif ID 45 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Reverse Complement Original Motif Forward 5 7 0 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: DDBBBCACTGCABTBBB ----TCTCTSC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00018 Irf4_secondary Original Motif Reverse Complement Backward 6 7 0.00147657 Species: Mus musculus Consensus sequence (original motif): VVBAYTCTCGGWHDB Consensus sequence (reverse complement motif): BHHWCCGAGAMTVVB Alignment: BHHWCCGAGAMTVVB ---GSAGAGA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00040 Irf5_secondary Original Motif Original Motif Backward 6 7 0.00225471 Species: Mus musculus Consensus sequence (original motif): BHDAHCGAGARTHBV Consensus sequence (reverse complement motif): VBHAKTCTCGHTHHV Alignment: BHDAHCGAGARTHBV ---GSAGAGA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_primary Reverse Complement Reverse Complement Forward 4 7 0.00336112 Species: Mus musculus Consensus sequence (original motif): DHVDTGTGCACAYAHDH Consensus sequence (reverse complement motif): HDHTMTGTGCACADVHD Alignment: HDHTMTGTGCACADVHD ---TCTCTSC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Original Motif Original Motif Forward 6 7 0.00351001 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: BDHDDADAGATAAGADHBDHVD -----GSAGAGA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 46 Motif name: Motif 46 Consensus sequence (original motif): AGRKGGCR Consensus sequence (reverse complement motif): KGCCYKCT ************************************************************************ Best Matches for Motif ID 46 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Reverse Complement Backward 6 8 0 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB ----AGRKGGCR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Original Motif Forward 5 8 0.0154192 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH ----AGRKGGCR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Reverse Complement Backward 3 8 0.0160089 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: VHTGCGGGGGCGGH ----AGRKGGCR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_primary Reverse Complement Reverse Complement Backward 6 8 0.0241611 Species: Mus musculus Consensus sequence (original motif): DYGCCYBARGGCAH Consensus sequence (reverse complement motif): HTGCCMTVKGGCMD Alignment: HTGCCMTVKGGCMD -KGCCYKCT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_secondary Original Motif Original Motif Backward 3 8 0.0267457 Species: Mus musculus Consensus sequence (original motif): DDBVHATAGGGGRBRMB Consensus sequence (reverse complement motif): BYMBKCCCCTATDVBHD Alignment: DDBVHATAGGGGRBRMB -------AGRKGGCR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 47 Motif name: Motif 47 Consensus sequence (original motif): CAGYDCC Consensus sequence (reverse complement motif): GGDKCTG ************************************************************************ Best Matches for Motif ID 47 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00205 Pknox2 Reverse Complement Original Motif Forward 3 7 0.0213831 Species: Mus musculus Consensus sequence (original motif): HAVSRSCTGTCAATHB Consensus sequence (reverse complement motif): VHATTGACAGSKSVTH Alignment: HAVSRSCTGTCAATHB --GGDKCTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00122 Tgif1 Original Motif Original Motif Backward 3 7 0.0245571 Species: Mus musculus Consensus sequence (original motif): DABWWTGACAGCTVVBD Consensus sequence (reverse complement motif): DBVVAGCTGTCAWWVTH Alignment: DABWWTGACAGCTVVBD --------CAGYDCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00203 Pknox1 Original Motif Reverse Complement Backward 3 7 0.0300471 Species: Mus musculus Consensus sequence (original motif): DRVSASCTGTCAAWVV Consensus sequence (reverse complement motif): VVWTTGACAGSTSBKD Alignment: VVWTTGACAGSTSBKD -------CAGYDCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00258 Tgif2 Original Motif Reverse Complement Backward 3 7 0.0300683 Species: Mus musculus Consensus sequence (original motif): AABBAGCTGTCAAWVV Consensus sequence (reverse complement motif): VBWTTGACAGCTVBTT Alignment: VBWTTGACAGCTVBTT -------CAGYDCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_2205.1 Original Motif Reverse Complement Forward 9 7 0.0305033 Species: Mus musculus Consensus sequence (original motif): AVDHCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGHHVT Alignment: WVVHWTWACAGCGHHVT --------CAGYDCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 48 Motif name: Motif 48 Consensus sequence (original motif): CCACYAGR Consensus sequence (reverse complement motif): MCTKGTGG ************************************************************************ Best Matches for Motif ID 48 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Original Motif Reverse Complement Backward 7 8 0 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB ---------CCACYAGR------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Reverse Complement Reverse Complement Backward 11 8 0.000875703 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH ----MCTKGTGG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_secondary Original Motif Original Motif Forward 8 8 0.00261558 Species: Mus musculus Consensus sequence (original motif): BDDRVGACCACCHBDVB Consensus sequence (reverse complement motif): BBDVHGGTGGTCBKDDB Alignment: BDDRVGACCACCHBDVB -------CCACYAGR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Reverse Complement Reverse Complement Forward 5 8 0.00296024 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: CVHBSCGGGTGGTCMHVHHCDH ----MCTKGTGG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Original Motif Forward 5 8 0.0161251 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD ----MCTKGTGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 49 Motif name: Motif 49 Consensus sequence (original motif): CTGGCCTC Consensus sequence (reverse complement motif): GAGGCCAG ************************************************************************ Best Matches for Motif ID 49 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Reverse Complement Reverse Complement Forward 8 8 0 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: TCDAMVBGACGCMAKDDDVBBD -------GAGGCCAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Reverse Complement Backward 6 8 0.00199504 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: DBBHHTGACCCCTBBYV ----CTGGCCTC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_primary Original Motif Reverse Complement Backward 3 8 0.0108368 Species: Mus musculus Consensus sequence (original motif): DBBATGCCAACCHVHH Consensus sequence (reverse complement motif): DDBHGGTTGGCATVBD Alignment: DDBHGGTTGGCATVBD ------CTGGCCTC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Reverse Complement Reverse Complement Backward 8 8 0.0117596 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: DMTWDGTCAGCADWTTH --GAGGCCAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Reverse Complement Reverse Complement Forward 6 8 0.0118075 Species: Mus musculus Consensus sequence (original motif): DBHBDTGACCCCDHVHB Consensus sequence (reverse complement motif): VHBHDGGGGTCAHBHBD Alignment: VHBHDGGGGTCAHBHBD -----GAGGCCAG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 50 Motif name: Motif 50 Consensus sequence (original motif): AGRAA Consensus sequence (reverse complement motif): TTMCT ************************************************************************ Best Matches for Motif ID 50 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_primary Original Motif Original Motif Forward 8 5 0 Species: Mus musculus Consensus sequence (original motif): DCTTTCKAGGAATHHV Consensus sequence (reverse complement motif): VHHATTCCTYGAAAGD Alignment: DCTTTCKAGGAATHHV -------AGRAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Original Motif Original Motif Backward 5 5 0.00150766 Species: Mus musculus Consensus sequence (original motif): BWAHSMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRSDTWV Alignment: BWAHSMGGAAGTWD -----AGRAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00090 Elf3_primary Reverse Complement Reverse Complement Forward 5 5 0.00378425 Species: Mus musculus Consensus sequence (original motif): DAHMMGGAARTDA Consensus sequence (reverse complement motif): TDAMTTCCYYDTD Alignment: TDAMTTCCYYDTD ----TTMCT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00181 Barx1 Reverse Complement Reverse Complement Backward 3 5 0.00386973 Species: Mus musculus Consensus sequence (original motif): MHRVYAATTRSYDHAW Consensus sequence (reverse complement motif): WTHHMSKAATTMVKHY Alignment: WTHHMSKAATTMVKHY ---------TTMCT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00085 Sfpi1_primary Original Motif Original Motif Backward 5 5 0.00623266 Species: Mus musculus Consensus sequence (original motif): BDAWGVGGAAGTDH Consensus sequence (reverse complement motif): HDACTTCCBCWTDV Alignment: BDAWGVGGAAGTDH -----AGRAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 51 Motif name: Motif 51 Consensus sequence (original motif): GAGTTACA Consensus sequence (reverse complement motif): TGTAACTC ************************************************************************ Best Matches for Motif ID 51 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00103 Jundm2_secondary Original Motif Original Motif Backward 3 8 0 Species: Mus musculus Consensus sequence (original motif): VDKDRTGASTCAYHDH Consensus sequence (reverse complement motif): HDDKTGASTCAKHRDB Alignment: VDKDRTGASTCAYHDH ------GAGTTACA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_1765.2 Reverse Complement Original Motif Forward 8 8 0.00122205 Species: Mus musculus Consensus sequence (original motif): AVDVCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGBHBT Alignment: AVDVCGCTGTWAWDVVW -------TGTAACTC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00205 Pknox2 Reverse Complement Original Motif Backward 2 8 0.0014195 Species: Mus musculus Consensus sequence (original motif): HAVSRSCTGTCAATHB Consensus sequence (reverse complement motif): VHATTGACAGSKSVTH Alignment: HAVSRSCTGTCAATHB -------TGTAACTC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00236 Irx2 Original Motif Reverse Complement Forward 2 8 0.00152046 Species: Mus musculus Consensus sequence (original motif): WDDDTACATGTADDWBW Consensus sequence (reverse complement motif): WVWDDTACATGTADDDW Alignment: WVWDDTACATGTADDDW -GAGTTACA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00193 Rhox11_2205.1 Reverse Complement Original Motif Backward 3 8 0.00217941 Species: Mus musculus Consensus sequence (original motif): AVDHCGCTGTWAWDVVW Consensus sequence (reverse complement motif): WVVHWTWACAGCGHHVT Alignment: AVDHCGCTGTWAWDVVW -------TGTAACTC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 52 Motif name: Motif 52 Consensus sequence (original motif): AAATAAAW Consensus sequence (reverse complement motif): WTTTATTT ************************************************************************ Best Matches for Motif ID 52 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00133 Cdx2 Original Motif Original Motif Forward 6 8 0 Species: Mus musculus Consensus sequence (original motif): DVVGGYMATAAAAHKH Consensus sequence (reverse complement motif): HRHTTTTATYMCCVBD Alignment: DVVGGYMATAAAAHKH -----AAATAAAW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Original Motif Original Motif Backward 5 8 0.00105399 Species: Mus musculus Consensus sequence (original motif): HDHYYAATAAAAHHHH Consensus sequence (reverse complement motif): HDHHTTTTATTKKHDD Alignment: HDHYYAATAAAAHHHH ----AAATAAAW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Reverse Complement Reverse Complement Forward 5 8 0.00468315 Species: Mus musculus Consensus sequence (original motif): VRHCCAATAAAAWHHV Consensus sequence (reverse complement motif): VDHWTTTTATTGGDKB Alignment: VDHWTTTTATTGGDKB ----WTTTATTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00217 Hoxa10 Original Motif Original Motif Forward 5 8 0.00632827 Species: Mus musculus Consensus sequence (original motif): DHBGYAATAAAATDHW Consensus sequence (reverse complement motif): WDDATTTTATTMCBHD Alignment: DHBGYAATAAAATDHW ----AAATAAAW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Reverse Complement Forward 6 8 0.00650679 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB -----WTTTATTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 53 Motif name: Motif 53 Consensus sequence (original motif): CAGATCCC Consensus sequence (reverse complement motif): GGGATCTG ************************************************************************ Best Matches for Motif ID 53 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00232 Dobox4 Original Motif Original Motif Backward 6 8 0 Species: Mus musculus Consensus sequence (original motif): HWHWTAGATACCCYWTD Consensus sequence (reverse complement motif): DAWKGGGTATCTAWHWH Alignment: HWHWTAGATACCCYWTD ----CAGATCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_primary Reverse Complement Original Motif Forward 7 8 0.0114177 Species: Mus musculus Consensus sequence (original motif): DVDDATGGGATGKMDDV Consensus sequence (reverse complement motif): BDDYYCATCCCATDDBD Alignment: DVDDATGGGATGKMDDV ------GGGATCTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00019 Zbtb12_primary Reverse Complement Original Motif Forward 4 8 0.0161888 Species: Mus musculus Consensus sequence (original motif): BDHRBGTTCTAGATCVB Consensus sequence (reverse complement motif): BBGATCTAGAACBKHDB Alignment: BDHRBGTTCTAGATCVB ---GGGATCTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00265 Pitx3 Reverse Complement Original Motif Backward 6 8 0.0173992 Species: Mus musculus Consensus sequence (original motif): VGGGGGATTAGCDDBC Consensus sequence (reverse complement motif): GBHDGCTAATCCCCCB Alignment: VGGGGGATTAGCDDBC ---GGGATCTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00024 Glis2_primary Original Motif Original Motif Forward 3 8 0.0190616 Species: Mus musculus Consensus sequence (original motif): HHHVGACCCCCCVBRD Consensus sequence (reverse complement motif): HKBBGGGGGGTCVHHH Alignment: HHHVGACCCCCCVBRD --CAGATCCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 54 Motif name: Motif 54 Consensus sequence (original motif): ATTYY Consensus sequence (reverse complement motif): MKAAT ************************************************************************ Best Matches for Motif ID 54 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00253 Rax Reverse Complement Reverse Complement Forward 6 5 0 Species: Mus musculus Consensus sequence (original motif): WSCVYTAATTARYBSVH Consensus sequence (reverse complement motif): DBSBKMTAATTAKBGSW Alignment: DBSBKMTAATTAKBGSW -----MKAAT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00163 En2 Reverse Complement Reverse Complement Forward 6 5 0.00258272 Species: Mus musculus Consensus sequence (original motif): WGHVYTAATTARTBVHH Consensus sequence (reverse complement motif): HHVBAMTAATTAKBDCW Alignment: HHVBAMTAATTAKBDCW -----MKAAT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00178 Og2x Reverse Complement Reverse Complement Forward 6 5 0.00347324 Species: Mus musculus Consensus sequence (original motif): CGVVYYAATTRRBHDHB Consensus sequence (reverse complement motif): BHDHBMKAATTMKVVCG Alignment: BHDHBMKAATTMKVVCG -----MKAAT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00108 Alx3 Reverse Complement Reverse Complement Backward 8 5 0.00511465 Species: Mus musculus Consensus sequence (original motif): WVHAYTAATTARYTVHV Consensus sequence (reverse complement motif): VHVAKMTAATTAKTHBW Alignment: VHVAKMTAATTAKTHBW -----MKAAT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00139 Nkx1-2 Reverse Complement Reverse Complement Backward 9 5 0.0054602 Species: Mus musculus Consensus sequence (original motif): DDBVRYTAATTARTDCW Consensus sequence (reverse complement motif): WGHAMTAATTAKKVBDH Alignment: WGHAMTAATTAKKVBDH ----MKAAT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 55 Motif name: Motif 55 Consensus sequence (original motif): GCTCACAA Consensus sequence (reverse complement motif): TTGTGAGC ************************************************************************ Best Matches for Motif ID 55 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_secondary Reverse Complement Reverse Complement Backward 5 8 0 Species: Mus musculus Consensus sequence (original motif): HVHRGCACACAAHHHV Consensus sequence (reverse complement motif): BHHHTTGTGTGCKHVD Alignment: BHHHTTGTGTGCKHVD ----TTGTGAGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Original Motif Original Motif Forward 5 8 0.0097578 Species: Mus musculus Consensus sequence (original motif): DVMVGCACACACKCVH Consensus sequence (reverse complement motif): HBGYGTGTGTGCVRVD Alignment: DVMVGCACACACKCVH ----GCTCACAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00095 Zfp691_primary Original Motif Original Motif Backward 2 8 0.0133529 Species: Mus musculus Consensus sequence (original motif): BDHVCAGTGCTCMBHDD Consensus sequence (reverse complement motif): DDHBYGAGCACTGBHHB Alignment: BDHVCAGTGCTCMBHDD --------GCTCACAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00258 Tgif2 Reverse Complement Reverse Complement Backward 6 8 0.0172769 Species: Mus musculus Consensus sequence (original motif): AABBAGCTGTCAAWVV Consensus sequence (reverse complement motif): VBWTTGACAGCTVBTT Alignment: VBWTTGACAGCTVBTT ---TTGTGAGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Original Motif Original Motif Backward 4 8 0.0197606 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: HAAWDTGCTGACDWARH ------GCTCACAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 56 Motif name: Motif 56 Consensus sequence (original motif): CCACATGG Consensus sequence (reverse complement motif): CCATGTGG ************************************************************************ Best Matches for Motif ID 56 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_primary Reverse Complement Reverse Complement Backward 4 8 0 Species: Mus musculus Consensus sequence (original motif): DYGCCYBARGGCAH Consensus sequence (reverse complement motif): HTGCCMTVKGGCMD Alignment: HTGCCMTVKGGCMD ---CCATGTGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Original Motif Backward 9 8 0.000569341 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT -------CCACATGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Forward 4 8 0.0020225 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD ---CCACATGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Original Motif Forward 5 8 0.00356885 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: HVDDVCAGATGKYHBBV ----CCACATGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Original Motif Original Motif Forward 11 8 0.00437787 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: HTBVVVDGGACCACCCRGRDBG ----------CCACATGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 57 Motif name: Motif 57 Consensus sequence (original motif): ACACACAY Consensus sequence (reverse complement motif): KTGTGTGT ************************************************************************ Best Matches for Motif ID 57 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Reverse Complement Reverse Complement Forward 3 8 0 Species: Mus musculus Consensus sequence (original motif): DVMVGCACACACKCVH Consensus sequence (reverse complement motif): HBGYGTGTGTGCVRVD Alignment: HBGYGTGTGTGCVRVD --KTGTGTGT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_secondary Reverse Complement Reverse Complement Backward 3 8 0.0175328 Species: Mus musculus Consensus sequence (original motif): HVHRGCACACAAHHHV Consensus sequence (reverse complement motif): BHHHTTGTGTGCKHVD Alignment: BHHHTTGTGTGCKHVD ------KTGTGTGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00041 Foxj1_primary Original Motif Original Motif Forward 6 8 0.0353784 Species: Mus musculus Consensus sequence (original motif): HDHRTAAACAAAHDDD Consensus sequence (reverse complement motif): DDDHTTTGTTTAMHDH Alignment: HDHRTAAACAAAHDDD -----ACACACAY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00026 Zscan4_primary Original Motif Original Motif Backward 3 8 0.0359654 Species: Mus musculus Consensus sequence (original motif): DHVDTGTGCACAYAHDH Consensus sequence (reverse complement motif): HDHTMTGTGCACADVHD Alignment: DHVDTGTGCACAYAHDH -------ACACACAY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Reverse Complement Reverse Complement Forward 3 8 0.0382549 Species: Mus musculus Consensus sequence (original motif): HDHADGTAAACAAAVVH Consensus sequence (reverse complement motif): DVVTTTGTTTACDTHDH Alignment: DVVTTTGTTTACDTHDH --KTGTGTGT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 58 Motif name: Motif 58 Consensus sequence (original motif): TACATGCA Consensus sequence (reverse complement motif): TGCATGTA ************************************************************************ Best Matches for Motif ID 58 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00150 Irx6 Original Motif Reverse Complement Backward 5 8 0 Species: Mus musculus Consensus sequence (original motif): HAHDTACATGTAVDWHT Consensus sequence (reverse complement motif): AHWDBTACATGTADHTH Alignment: AHWDBTACATGTADHTH -----TACATGCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00236 Irx2 Original Motif Reverse Complement Backward 5 8 0.000109499 Species: Mus musculus Consensus sequence (original motif): WDDDTACATGTADDWBW Consensus sequence (reverse complement motif): WVWDDTACATGTADDDW Alignment: WVWDDTACATGTADDDW -----TACATGCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_2226.1 Original Motif Reverse Complement Backward 5 8 0.000755361 Species: Mus musculus Consensus sequence (original motif): DDDHTACATGTAVWDHD Consensus sequence (reverse complement motif): DHDWBTACATGTAHDDD Alignment: DHDWBTACATGTAHDDD -----TACATGCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_0920.1 Reverse Complement Original Motif Backward 6 8 0.00254146 Species: Mus musculus Consensus sequence (original motif): DDDDTACATGTAVWWHD Consensus sequence (reverse complement motif): DDWWBTACATGTADDDD Alignment: DDDDTACATGTAVWWHD ----TGCATGTA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00250 Irx5 Original Motif Reverse Complement Backward 5 8 0.0106901 Species: Mus musculus Consensus sequence (original motif): DDDHWACATGTWHDABW Consensus sequence (reverse complement motif): WVTDHWACATGTWHDDD Alignment: WVTDHWACATGTWHDDD -----TACATGCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 59 Motif name: Motif 59 Consensus sequence (original motif): CCCCRCCC Consensus sequence (reverse complement motif): GGGKGGGG ************************************************************************ Best Matches for Motif ID 59 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Backward 5 8 0 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD ----CCCCRCCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Reverse Complement Reverse Complement Backward 3 8 0.0189858 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD -----GGGKGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Reverse Complement Reverse Complement Backward 4 8 0.0254924 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: BHHDYGGGGGGGGBVD -----GGGKGGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Forward 8 8 0.0331118 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH -------CCCCRCCC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Reverse Complement Reverse Complement Forward 6 8 0.0351247 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: VHTGCGGGGGCGGH -----GGGKGGGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 60 Motif name: Motif 60 Consensus sequence (original motif): CTGGAR Consensus sequence (reverse complement motif): MTCCAG ************************************************************************ Best Matches for Motif ID 60 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Reverse Complement Reverse Complement Forward 5 6 0 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: BBBAVTGCAGTGBBVDD ----MTCCAG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Reverse Complement Original Motif Forward 4 6 0.00563465 Species: Mus musculus Consensus sequence (original motif): HDHDDCCAGACABBHVH Consensus sequence (reverse complement motif): HVHBVTGTCTGGDDHDD Alignment: HDHDDCCAGACABBHVH ---MTCCAG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00416 Fli1 Original Motif Reverse Complement Backward 7 6 0.00856965 Species: Mus musculus Consensus sequence (original motif): VBBVAYTTCCGGTDDH Consensus sequence (reverse complement motif): DHDACCGGAAKTBBVV Alignment: DHDACCGGAAKTBBVV ----CTGGAR------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00411 Erg Original Motif Reverse Complement Backward 7 6 0.00868366 Species: Mus musculus Consensus sequence (original motif): VBBVAYTTCCGGTDDB Consensus sequence (reverse complement motif): BDDACCGGAAKTVBVB Alignment: BDDACCGGAAKTVBVB ----CTGGAR------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Original Motif Original Motif Forward 8 6 0.0091158 Species: Mus musculus Consensus sequence (original motif): HDVRCCACTTGARADBD Consensus sequence (reverse complement motif): DVDTKTCAAGTGGKBDH Alignment: HDVRCCACTTGARADBD -------CTGGAR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 61 Motif name: Motif 61 Consensus sequence (original motif): AGATGGY Consensus sequence (reverse complement motif): KCCATCT ************************************************************************ Best Matches for Motif ID 61 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Original Motif Forward 7 7 0 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: HVDDVCAGATGKYHBBV ------AGATGGY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_primary Reverse Complement Reverse Complement Backward 8 7 0.0380154 Species: Mus musculus Consensus sequence (original motif): VVDBAACAGBTGBYHB Consensus sequence (reverse complement motif): BDKVCABCTGTTBDBV Alignment: BDKVCABCTGTTBDBV --KCCATCT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00081 Mybl1_secondary Original Motif Reverse Complement Forward 7 7 0.0385991 Species: Mus musculus Consensus sequence (original motif): BBVCCAACTGCCGHB Consensus sequence (reverse complement motif): BHCGGCAGTTGGBBB Alignment: BHCGGCAGTTGGBBB ------AGATGGY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_primary Reverse Complement Reverse Complement Forward 4 7 0.0422018 Species: Mus musculus Consensus sequence (original motif): DVDDATGGGATGKMDDV Consensus sequence (reverse complement motif): BDDYYCATCCCATDDBD Alignment: BDDYYCATCCCATDDBD ---KCCATCT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00092 Myb_secondary Original Motif Reverse Complement Backward 3 7 0.0463999 Species: Mus musculus Consensus sequence (original motif): BDACCAACTGCCRBBH Consensus sequence (reverse complement motif): DBVKGGCAGTTGGTHB Alignment: DBVKGGCAGTTGGTHB -------AGATGGY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 62 Motif name: Motif 62 Consensus sequence (original motif): CGCCVCC Consensus sequence (reverse complement motif): GGVGGCG ************************************************************************ Best Matches for Motif ID 62 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Reverse Complement Backward 6 7 0 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB -----GGVGGCG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Reverse Complement Reverse Complement Backward 3 7 0.0105671 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: VHTGCGGGGGCGGH -----GGVGGCG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Backward 6 7 0.0302678 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD ----CGCCVCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Original Motif Forward 8 7 0.0347726 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV -------CGCCVCC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Original Motif Forward 8 7 0.0384581 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB -------CGCCVCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 63 Motif name: Motif 63 Consensus sequence (original motif): AGAGGGWG Consensus sequence (reverse complement motif): CWCCCTCT ************************************************************************ Best Matches for Motif ID 63 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Reverse Complement Backward 6 8 0 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB ----AGAGGGWG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Reverse Complement Backward 11 8 0.00709886 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: DVVTTVGTGGGHGGYAMHWHHHY -----AGAGGGWG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Original Motif Reverse Complement Backward 12 8 0.0107485 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT ----AGAGGGWG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Reverse Complement Backward 3 8 0.0126141 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: VHTGCGGGGGCGGH ----AGAGGGWG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Reverse Complement Backward 6 8 0.0180504 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD --AGAGGGWG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 64 Motif name: Motif 64 Consensus sequence (original motif): CATATRCA Consensus sequence (reverse complement motif): TGMATATG ************************************************************************ Best Matches for Motif ID 64 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00211 Pou3f3 Reverse Complement Original Motif Backward 4 8 0 Species: Mus musculus Consensus sequence (original motif): HADDTATGCATAATDDA Consensus sequence (reverse complement motif): TDDATTATGCATADDTH Alignment: HADDTATGCATAATDDA ------TGMATATG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00179 Pou2f3 Reverse Complement Original Motif Backward 4 8 0.00980027 Species: Mus musculus Consensus sequence (original motif): BHDTATGCAAATBHDV Consensus sequence (reverse complement motif): BHHVATTTGCATAHHV Alignment: BHDTATGCAAATBHDV -----TGMATATG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00191 Pou2f2 Reverse Complement Original Motif Backward 4 8 0.011527 Species: Mus musculus Consensus sequence (original motif): BHDTATGCAAATDHDV Consensus sequence (reverse complement motif): BHHDATTTGCATAHHV Alignment: BHDTATGCAAATDHDV -----TGMATATG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Reverse Complement Reverse Complement Backward 5 8 0.0243027 Species: Mus musculus Consensus sequence (original motif): DBDHCGTGTGCAAMDH Consensus sequence (reverse complement motif): HDYTTGCACACGDHBH Alignment: HDYTTGCACACGDHBH ----TGMATATG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_primary Original Motif Reverse Complement Forward 4 8 0.0250687 Species: Mus musculus Consensus sequence (original motif): HHDATGTGCACATAMDH Consensus sequence (reverse complement motif): HHRTATGTGCACATHHD Alignment: HHRTATGTGCACATHHD ---CATATRCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 65 Motif name: Motif 65 Consensus sequence (original motif): ARAACA Consensus sequence (reverse complement motif): TGTTMT ************************************************************************ Best Matches for Motif ID 65 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00101 Sox12_primary Reverse Complement Original Motif Backward 5 6 0 Species: Mus musculus Consensus sequence (original motif): THATTGTTVTHAWH Consensus sequence (reverse complement motif): DWTHAVAACAATHA Alignment: THATTGTTVTHAWH ----TGTTMT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Original Motif Forward 4 6 0.000395587 Species: Mus musculus Consensus sequence (original motif): HBDDRAACAAAGRABHH Consensus sequence (reverse complement motif): HHBTMCTTTGTTMDDVH Alignment: HBDDRAACAAAGRABHH ---ARAACA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Reverse Complement Reverse Complement Forward 9 6 0.00357565 Species: Mus musculus Consensus sequence (original motif): HBDDDAACAAAGRVBHH Consensus sequence (reverse complement motif): HHBBMCTTTGTTHDDBH Alignment: HHBBMCTTTGTTHDDBH --------TGTTMT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Reverse Complement Backward 6 6 0.00753019 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH -----------TGTTMT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_secondary Reverse Complement Reverse Complement Forward 6 6 0.0083324 Species: Mus musculus Consensus sequence (original motif): HDBAHCAWAACADWDVD Consensus sequence (reverse complement motif): DVHWDTGTTWTGDTBDH Alignment: DVHWDTGTTWTGDTBDH -----TGTTMT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 66 Motif name: Motif 66 Consensus sequence (original motif): TATAAATR Consensus sequence (reverse complement motif): KATTTATA ************************************************************************ Best Matches for Motif ID 66 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00118 Pou4f3 Original Motif Original Motif Forward 4 8 0 Species: Mus musculus Consensus sequence (original motif): HVTTATTAATKADKHC Consensus sequence (reverse complement motif): GHYHTYATTAATAAVH Alignment: HVTTATTAATKADKHC ---TATAAATR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_primary Original Motif Original Motif Backward 6 8 0.00672344 Species: Mus musculus Consensus sequence (original motif): DWAATRTAAACAAWVVB Consensus sequence (reverse complement motif): VVVWTTGTTTAMATTWD Alignment: DWAATRTAAACAAWVVB ----TATAAATR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00154 Dlx3 Original Motif Original Motif Backward 6 8 0.00785197 Species: Mus musculus Consensus sequence (original motif): BHVVDATAATTACMVHH Consensus sequence (reverse complement motif): DHVRGTAATTATHVVDV Alignment: BHVVDATAATTACMVHH ----TATAAATR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00016 Sry_primary Original Motif Reverse Complement Forward 7 8 0.00840021 Species: Mus musculus Consensus sequence (original motif): BHDHATTATAATDDDV Consensus sequence (reverse complement motif): VDDDATTATAATHDHV Alignment: VDDDATTATAATHDHV ------TATAAATR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00110 Dlx4 Reverse Complement Reverse Complement Forward 6 8 0.011539 Species: Mus musculus Consensus sequence (original motif): BCVVDATAATTACMVHC Consensus sequence (reverse complement motif): GHVRGTAATTATDVVGV Alignment: GHVRGTAATTATDVVGV -----KATTTATA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 67 Motif name: Motif 67 Consensus sequence (original motif): SYGCCCYCTDSTGG Consensus sequence (reverse complement motif): CCASHAGKGGGCKS ************************************************************************ Best Matches for Motif ID 67 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Reverse Complement Reverse Complement Forward 1 14 0.036534 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: BHHDYGGGGGGGGBVD CCASHAGKGGGCKS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Original Motif Original Motif Forward 6 14 0.0371579 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH -----SYGCCCYCTDSTGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Forward 4 14 0.0410702 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ---CCASHAGKGGGCKS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_secondary Original Motif Original Motif Backward 2 14 0.0411664 Species: Mus musculus Consensus sequence (original motif): DDDTWCCCCCCGGDRVH Consensus sequence (reverse complement motif): HVKDCCGGGGGGWADDD Alignment: DDDTWCCCCCCGGDRVH --SYGCCCYCTDSTGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondary Reverse Complement Original Motif Backward 3 14 0.0419746 Species: Mus musculus Consensus sequence (original motif): BBHBGAGTGGGAHHDB Consensus sequence (reverse complement motif): BHHDTCCCACTCBDBV Alignment: BBHBGAGTGGGAHHDB CCASHAGKGGGCKS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 68 Motif name: Motif 68 Consensus sequence (original motif): WAAWAAAWAWWWAA Consensus sequence (reverse complement motif): TTWWWTWTTTWTTW ************************************************************************ Best Matches for Motif ID 68 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Original Motif Original Motif Forward 4 14 0.0252297 Species: Mus musculus Consensus sequence (original motif): HHWAWGTAAAYAAAVDB Consensus sequence (reverse complement motif): BDVTTTKTTTACWTWHH Alignment: HHWAWGTAAAYAAAVDB ---WAAWAAAWAWWWAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondary Reverse Complement Reverse Complement Forward 1 14 0.0252358 Species: Mus musculus Consensus sequence (original motif): ADDDYAWAACAAMAHH Consensus sequence (reverse complement motif): HDTYTTGTTWTKDDDT Alignment: HDTYTTGTTWTKDDDT TTWWWTWTTTWTTW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Original Motif Original Motif Forward 4 14 0.0267996 Species: Mus musculus Consensus sequence (original motif): HDHADGTAAACAAAVVH Consensus sequence (reverse complement motif): DVVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH ---WAAWAAAWAWWWAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00244 Tlx2 Reverse Complement Reverse Complement Backward 2 14 0.0275942 Species: Mus musculus Consensus sequence (original motif): BAATHAATTAATAAHWW Consensus sequence (reverse complement motif): WWDTTATTAATTHATTV Alignment: WWDTTATTAATTHATTV --TTWWWTWTTTWTTW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00041 Foxj1_primary Original Motif Original Motif Backward 2 14 0.0288501 Species: Mus musculus Consensus sequence (original motif): HDHRTAAACAAAHDDD Consensus sequence (reverse complement motif): DDDHTTTGTTTAMHDH Alignment: HDHRTAAACAAAHDDD -WAAWAAAWAWWWAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 69 Motif name: Motif 69 Consensus sequence (original motif): CCTGGARCTGGAGT Consensus sequence (reverse complement motif): ACTCCAGMTCCAGG ************************************************************************ Best Matches for Motif ID 69 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondary Reverse Complement Reverse Complement Backward 1 14 0.0303891 Species: Mus musculus Consensus sequence (original motif): BBHBGAGTGGGAHHDB Consensus sequence (reverse complement motif): BHHDTCCCACTCBDBV Alignment: BHHDTCCCACTCBDBV --ACTCCAGMTCCAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Reverse Complement Original Motif Backward 3 14 0.031849 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: DHDBCAAGGTCAHVBDH -ACTCCAGMTCCAGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Reverse Complement Reverse Complement Backward 1 14 0.0328055 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: TCDAMVBGACGCMAKDDDVBBD --------ACTCCAGMTCCAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Original Motif Reverse Complement Forward 2 14 0.0343241 Species: Mus musculus Consensus sequence (original motif): HDHDDCCAGACABBHVH Consensus sequence (reverse complement motif): HVHBVTGTCTGGDDHDD Alignment: HVHBVTGTCTGGDDHDD -CCTGGARCTGGAGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00076 Rfxdc2_secondary Reverse Complement Reverse Complement Backward 4 14 0.0347793 Species: Mus musculus Consensus sequence (original motif): BBVCDTRGAKACSVDDH Consensus sequence (reverse complement motif): HDDVSGTRTCMADGBVB Alignment: HDDVSGTRTCMADGBVB ACTCCAGMTCCAGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 70 Motif name: Ar Consensus sequence (original motif): HWDAGHACRHHVTGTHCCHVMV Consensus sequence (reverse complement motif): VRVDGGHACAVDDKGTHCTDWH ************************************************************************ Best Matches for Motif ID 70 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Original Motif Original Motif Backward 1 22 0.0676991 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Reverse Complement Reverse Complement Backward 1 22 0.0692146 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: VVYDDDCHCAVACAATTDBVAC VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Forward 1 22 0.0695612 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Reverse Complement Forward 2 22 0.0771346 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM -HWDAGHACRHHVTGTHCCHVMV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Original Motif Forward 1 22 0.0772045 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW VRVDGGHACAVDDKGTHCTDWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 71 Motif name: Arnt Consensus sequence (original motif): CACGTG Consensus sequence (reverse complement motif): CACGTG ************************************************************************ Best Matches for Motif ID 71 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Original Motif Backward 9 6 0 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: RDHDBVDTCACGTGASBHVHDH --------CACGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Backward 9 6 0.0026425 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM ---------CACGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Forward 5 6 0.0044422 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD ----CACGTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Reverse Complement Forward 7 6 0.0342153 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB ------CACGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Reverse Complement Reverse Complement Forward 9 6 0.0471928 Species: Mus musculus Consensus sequence (original motif): DBDHCGTGTGCAAMDH Consensus sequence (reverse complement motif): HDYTTGCACACGDHBH Alignment: HDYTTGCACACGDHBH --------CACGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 72 Motif name: ArntAhr Consensus sequence (original motif): YGCGTG Consensus sequence (reverse complement motif): CACGCM ************************************************************************ Best Matches for Motif ID 72 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Reverse Complement Forward 7 6 0 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ------YGCGTG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Reverse Complement Reverse Complement Forward 6 6 0.00183587 Species: Mus musculus Consensus sequence (original motif): BDWAGGCGTGBCHHD Consensus sequence (reverse complement motif): HHDGBCACGCCTWDB Alignment: HHDGBCACGCCTWDB -----CACGCM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Reverse Complement Backward 5 6 0.00348048 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: HDGTCGCGTGDCVB ----YGCGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Reverse Complement Reverse Complement Forward 8 6 0.00526158 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: TCDAMVBGACGCMAKDDDVBBD -------CACGCM--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00042 Gm397_second Original Motif Reverse Complement Backward 8 6 0.00558171 Species: Mus musculus Consensus sequence (original motif): DVMVGCACACACKCVH Consensus sequence (reverse complement motif): HBGYGTGTGTGCVRVD Alignment: HBGYGTGTGTGCVRVD ---YGCGTG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 73 Motif name: CREB1 Consensus sequence (original motif): TGACGTCA Consensus sequence (reverse complement motif): TGACGTCA ************************************************************************ Best Matches for Motif ID 73 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00103 Jundm2_primary Original Motif Original Motif Backward 5 8 0 Species: Mus musculus Consensus sequence (original motif): BBGATGACGTCAYCVH Consensus sequence (reverse complement motif): HVGMTGACGTCATCBB Alignment: BBGATGACGTCAYCVH ----TGACGTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00020 Atf1_primary Original Motif Original Motif Forward 5 8 2.53244e-05 Species: Mus musculus Consensus sequence (original motif): DBDRTGACGTCAYHRD Consensus sequence (reverse complement motif): DMDMTGACGTCAKHBD Alignment: DBDRTGACGTCAYHRD ----TGACGTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Original Motif Reverse Complement Backward 9 8 0.029362 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: TCDAMVBGACGCMAKDDDVBBD ------TGACGTCA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00020 Atf1_secondary Reverse Complement Reverse Complement Backward 4 8 0.0350871 Species: Mus musculus Consensus sequence (original motif): VDATGACGADYADH Consensus sequence (reverse complement motif): DDTMDTCGTCATDV Alignment: DDTMDTCGTCATDV ---TGACGTCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_primary Original Motif Original Motif Backward 6 8 0.0378098 Species: Mus musculus Consensus sequence (original motif): BHBBKKACGTMMVDBVB Consensus sequence (reverse complement motif): BVVDVRYACGTRYVBHB Alignment: BHBBKKACGTMMVDBVB ----TGACGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 74 Motif name: CTCF Consensus sequence (original motif): YDRCCASYAGRKGGCRSYV Consensus sequence (reverse complement motif): BMSMGCCYMCTKSTGGMHM ************************************************************************ Best Matches for Motif ID 74 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Original Motif Backward 1 19 0.0409369 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV ----BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Original Motif Backward 4 19 0.0409815 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB -YDRCCASYAGRKGGCRSYV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Reverse Complement Backward 1 19 0.0431951 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH ---BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Reverse Complement Original Motif Forward 4 19 0.0469794 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ---BMSMGCCYMCTKSTGGMHM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Original Motif Original Motif Backward 5 19 0.0482204 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH YDRCCASYAGRKGGCRSYV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 75 Motif name: Ddit3Cebpa Consensus sequence (original motif): VDRTGCAATMCC Consensus sequence (reverse complement motif): GGRATTGCAKHB ************************************************************************ Best Matches for Motif ID 75 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Original Motif Reverse Complement Backward 4 12 0.026968 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: BBBAVTGCAGTGBBVDD --VDRTGCAATMCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_primary Reverse Complement Reverse Complement Backward 2 12 0.0308236 Species: Mus musculus Consensus sequence (original motif): DBBATGCCAACCHVHH Consensus sequence (reverse complement motif): DDBHGGTTGGCATVBD Alignment: DDBHGGTTGGCATVBD ---GGRATTGCAKHB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_secondary Original Motif Original Motif Backward 4 12 0.0323758 Species: Mus musculus Consensus sequence (original motif): VDVVATCAATCRBBHD Consensus sequence (reverse complement motif): DHVBKGATTGATVBDV Alignment: VDVVATCAATCRBBHD -VDRTGCAATMCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00016 Sry_secondary Original Motif Original Motif Forward 4 12 0.0357538 Species: Mus musculus Consensus sequence (original motif): HHDHDRAACAATDDVHV Consensus sequence (reverse complement motif): VHVHDATTGTTMHDDDH Alignment: HHDHDRAACAATDDVHV ---VDRTGCAATMCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_secondary Original Motif Original Motif Backward 4 12 0.0387064 Species: Mus musculus Consensus sequence (original motif): VDVVATCAATCAHBHD Consensus sequence (reverse complement motif): DHVDTGATTGATVBDV Alignment: VDVVATCAATCAHBHD -VDRTGCAATMCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 76 Motif name: E2F1 Consensus sequence (original motif): TTTSGCGC Consensus sequence (reverse complement motif): GCGCSAAA ************************************************************************ Best Matches for Motif ID 76 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_secondary Original Motif Reverse Complement Backward 7 8 0 Species: Mus musculus Consensus sequence (original motif): HVBWYGGCGCCAADVBB Consensus sequence (reverse complement motif): BBBDTTGGCGCCKWVVD Alignment: BBBDTTGGCGCCKWVVD ---TTTSGCGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_secondary Reverse Complement Original Motif Backward 4 8 0.00182028 Species: Mus musculus Consensus sequence (original motif): HBHWYGGCGCCAMDVBB Consensus sequence (reverse complement motif): BBBDYTGGCGCCKWDBD Alignment: HBHWYGGCGCCAMDVBB ------GCGCSAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00072 IRC900814_primary Reverse Complement Original Motif Forward 5 8 0.0237639 Species: Mus musculus Consensus sequence (original motif): DDHTACGACAAAWDDB Consensus sequence (reverse complement motif): BHDWTTTGTCGTAHDD Alignment: DDHTACGACAAAWDDB ----GCGCSAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Reverse Complement Reverse Complement Backward 3 8 0.0275636 Species: Mus musculus Consensus sequence (original motif): VHDADGGCGCGCSHW Consensus sequence (reverse complement motif): WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB -----GCGCSAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Reverse Complement Reverse Complement Forward 9 8 0.028109 Species: Mus musculus Consensus sequence (original motif): DDGCGCGCGCRCHYRD Consensus sequence (reverse complement motif): DMMDGMGCGCGCGCHD Alignment: DMMDGMGCGCGCGCHD --------GCGCSAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 77 Motif name: EBF1 Consensus sequence (original motif): MCCCMAGGGA Consensus sequence (reverse complement motif): TCCCTYGGGY ************************************************************************ Best Matches for Motif ID 77 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_primary Original Motif Reverse Complement Forward 4 10 0.0191678 Species: Mus musculus Consensus sequence (original motif): BMCCCCCGGGGGGGB Consensus sequence (reverse complement motif): VCCCCCCCGGGGGRB Alignment: VCCCCCCCGGGGGRB ---MCCCMAGGGA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_primary Original Motif Reverse Complement Backward 3 10 0.0198894 Species: Mus musculus Consensus sequence (original motif): BHCCCCCGGGGGGG Consensus sequence (reverse complement motif): CCCCCCCGGGGGHB Alignment: CCCCCCCGGGGGHB --MCCCMAGGGA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_primary Original Motif Reverse Complement Forward 4 10 0.0208394 Species: Mus musculus Consensus sequence (original motif): BMCCCCCGGGGGGGB Consensus sequence (reverse complement motif): VCCCCCCCGGGGGRB Alignment: VCCCCCCCGGGGGRB ---MCCCMAGGGA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_primary Reverse Complement Reverse Complement Backward 3 10 0.0215181 Species: Mus musculus Consensus sequence (original motif): DYGCCYBARGGCAH Consensus sequence (reverse complement motif): HTGCCMTVKGGCMD Alignment: HTGCCMTVKGGCMD --TCCCTYGGGY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Original Motif Original Motif Backward 13 10 0.0271543 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: HTBVVVDGGACCACCCRGRDBG MCCCMAGGGA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 78 Motif name: Egr1 Consensus sequence (original motif): TTTSGCGC Consensus sequence (reverse complement motif): GCGCSAAA ************************************************************************ Best Matches for Motif ID 78 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_secondary Original Motif Reverse Complement Backward 7 8 0 Species: Mus musculus Consensus sequence (original motif): HVBWYGGCGCCAADVBB Consensus sequence (reverse complement motif): BBBDTTGGCGCCKWVVD Alignment: BBBDTTGGCGCCKWVVD ---TTTSGCGC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_secondary Reverse Complement Original Motif Backward 4 8 0.00182028 Species: Mus musculus Consensus sequence (original motif): HBHWYGGCGCCAMDVBB Consensus sequence (reverse complement motif): BBBDYTGGCGCCKWDBD Alignment: HBHWYGGCGCCAMDVBB ------GCGCSAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00072 IRC900814_primary Reverse Complement Original Motif Forward 5 8 0.0237639 Species: Mus musculus Consensus sequence (original motif): DDHTACGACAAAWDDB Consensus sequence (reverse complement motif): BHDWTTTGTCGTAHDD Alignment: DDHTACGACAAAWDDB ----GCGCSAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Reverse Complement Reverse Complement Backward 3 8 0.0275636 Species: Mus musculus Consensus sequence (original motif): VHDADGGCGCGCSHW Consensus sequence (reverse complement motif): WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB -----GCGCSAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Reverse Complement Reverse Complement Forward 9 8 0.028109 Species: Mus musculus Consensus sequence (original motif): DDGCGCGCGCRCHYRD Consensus sequence (reverse complement motif): DMMDGMGCGCGCGCHD Alignment: DMMDGMGCGCGCGCHD --------GCGCSAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 79 Motif name: ELK1 Consensus sequence (original motif): VDDCCGGAAR Consensus sequence (reverse complement motif): MTTCCGGHBV ************************************************************************ Best Matches for Motif ID 79 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00414 Ets1 Original Motif Original Motif Forward 4 10 0.00796762 Species: Mus musculus Consensus sequence (original motif): BDDDHACCGGAARTVDD Consensus sequence (reverse complement motif): DDBAMTTCCGGTDHDHB Alignment: BDDDHACCGGAARTVDD ---VDDCCGGAAR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00015 Ehf_primary Reverse Complement Reverse Complement Backward 3 10 0.0101295 Species: Mus musculus Consensus sequence (original motif): VBDABCCGGAAGTDD Consensus sequence (reverse complement motif): DDACTTCCGGBTHBB Alignment: DDACTTCCGGBTHBB ---MTTCCGGHBV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00411 Erg Original Motif Reverse Complement Backward 6 10 0.0105752 Species: Mus musculus Consensus sequence (original motif): VBBVAYTTCCGGTDDB Consensus sequence (reverse complement motif): BDDACCGGAAKTVBVB Alignment: BDDACCGGAAKTVBVB -VDDCCGGAAR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Original Motif Reverse Complement Forward 2 10 0.010693 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGDWDB Consensus sequence (reverse complement motif): BDWDCCGGAAGTHBBD Alignment: BDWDCCGGAAGTHBBD -VDDCCGGAAR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00423 Gm5454 Original Motif Reverse Complement Backward 6 10 0.011366 Species: Mus musculus Consensus sequence (original motif): VDHHACTTCCGGTHVH Consensus sequence (reverse complement motif): DVHACCGGAAGTHDDV Alignment: DVHACCGGAAGTHDDV -VDDCCGGAAR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 80 Motif name: ELK4 Consensus sequence (original motif): ACCGGAAGT Consensus sequence (reverse complement motif): ACTTCCGGT ************************************************************************ Best Matches for Motif ID 80 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_primary Original Motif Original Motif Backward 5 9 0 Species: Mus musculus Consensus sequence (original motif): HVHHACCGGAAGTDHHV Consensus sequence (reverse complement motif): BHHHACTTCCGGTHHBD Alignment: HVHHACCGGAAGTDHHV ----ACCGGAAGT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00414 Ets1 Reverse Complement Reverse Complement Forward 4 9 0.0025276 Species: Mus musculus Consensus sequence (original motif): BDDDHACCGGAARTVDD Consensus sequence (reverse complement motif): DDBAMTTCCGGTDHDHB Alignment: DDBAMTTCCGGTDHDHB ---ACTTCCGGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00421 Etv1 Original Motif Original Motif Backward 5 9 0.00356917 Species: Mus musculus Consensus sequence (original motif): MVHBACCGGAAGTVDVH Consensus sequence (reverse complement motif): HBDBACTTCCGGTBHVY Alignment: MVHBACCGGAAGTVDVH ----ACCGGAAGT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00410 Elk1 Original Motif Original Motif Forward 5 9 0.00371937 Species: Mus musculus Consensus sequence (original motif): VVHBACCGGAAGTDBHD Consensus sequence (reverse complement motif): DHBDACTTCCGGTVHVB Alignment: VVHBACCGGAAGTDBHD ----ACCGGAAGT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00420 Elk3 Original Motif Original Motif Backward 5 9 0.0045671 Species: Mus musculus Consensus sequence (original motif): DVBBACCGGAAGYDVVV Consensus sequence (reverse complement motif): VBVDMCTTCCGGTVBVD Alignment: DVBBACCGGAAGYDVVV ----ACCGGAAGT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 81 Motif name: ESR1 Consensus sequence (original motif): VDBHMAGGTCACCCTGACCY Consensus sequence (reverse complement motif): MGGTCAGGGTGACCTRDBHV ************************************************************************ Best Matches for Motif ID 81 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Reverse Complement Backward 4 20 0.0658405 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH VDBHMAGGTCACCCTGACCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Original Motif Reverse Complement Forward 1 20 0.0689748 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: VCTBHBVCTTGGWTACVVVVVDB VDBHMAGGTCACCCTGACCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Reverse Complement Reverse Complement Backward 3 20 0.0701247 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: CBDMCMGGGTGGTCCHVBVBAH MGGTCAGGGTGACCTRDBHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Original Motif Backward 3 20 0.0711267 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH MGGTCAGGGTGACCTRDBHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_primary Original Motif Reverse Complement Forward 2 20 0.0742427 Species: Mus musculus Consensus sequence (original motif): HDGHHBHRGACCACCCGSVDVG Consensus sequence (reverse complement motif): CVHBSCGGGTGGTCMHVHHCDH Alignment: CVHBSCGGGTGGTCMHVHHCDH -VDBHMAGGTCACCCTGACCY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 82 Motif name: ESR2 Consensus sequence (original motif): VHRGGTCABDBTGMCCTB Consensus sequence (reverse complement motif): BAGGYCABHBTGACCKHV ************************************************************************ Best Matches for Motif ID 82 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Original Motif Forward 4 18 0.0443894 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB ---VHRGGTCABDBTGMCCTB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Reverse Complement Forward 4 18 0.049219 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH ---VHRGGTCABDBTGMCCTB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Reverse Complement Backward 3 18 0.0509182 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM --VHRGGTCABDBTGMCCTB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Original Motif Forward 2 18 0.0527075 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB -BAGGYCABHBTGACCKHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Reverse Complement Backward 4 18 0.0541044 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH -BAGGYCABHBTGACCKHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 83 Motif name: Esrrb Consensus sequence (original motif): VBBYCAAGGTCA Consensus sequence (reverse complement motif): TGACCTTGMBBB ************************************************************************ Best Matches for Motif ID 83 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Reverse Complement Reverse Complement Forward 6 12 0 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: HHBVHTGACCTTGVDHD -----TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_primary Original Motif Original Motif Forward 1 12 0.0205471 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCAHVHB Consensus sequence (reverse complement motif): BHVDTGACCTTTDVDD Alignment: DHBHAAAGGTCAHVHB VBBYCAAGGTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Original Motif Original Motif Forward 1 12 0.0214372 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCACVHD Consensus sequence (reverse complement motif): HHVGTGACCTTTDVDD Alignment: DHBHAAAGGTCACVHD VBBYCAAGGTCA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_secondary Reverse Complement Reverse Complement Forward 5 12 0.0430759 Species: Mus musculus Consensus sequence (original motif): VBVBCSGGGTCAVBBH Consensus sequence (reverse complement motif): HVBVTGACCCSGBVBV Alignment: HVBVTGACCCSGBVBV ----TGACCTTGMBBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_primary Original Motif Original Motif Forward 1 12 0.0451776 Species: Mus musculus Consensus sequence (original motif): BDBVMGGGGTCAABHDV Consensus sequence (reverse complement motif): BHHVTTGACCCCYVVDB Alignment: BDBVMGGGGTCAABHDV VBBYCAAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 84 Motif name: GABPA Consensus sequence (original motif): CCGGAAGTGVV Consensus sequence (reverse complement motif): VVCACTTCCGG ************************************************************************ Best Matches for Motif ID 84 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_primary Reverse Complement Reverse Complement Forward 2 11 0 Species: Mus musculus Consensus sequence (original motif): HVHHACCGGAAGTDHHV Consensus sequence (reverse complement motif): BHHHACTTCCGGTHHBD Alignment: BHHHACTTCCGGTHHBD -VVCACTTCCGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00410 Elk1 Original Motif Original Motif Forward 6 11 0.000136484 Species: Mus musculus Consensus sequence (original motif): VVHBACCGGAAGTDBHD Consensus sequence (reverse complement motif): DHBDACTTCCGGTVHVB Alignment: VVHBACCGGAAGTDBHD -----CCGGAAGTGVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00420 Elk3 Original Motif Original Motif Forward 6 11 0.000219706 Species: Mus musculus Consensus sequence (original motif): DVBBACCGGAAGYDVVV Consensus sequence (reverse complement motif): VBVDMCTTCCGGTVBVD Alignment: DVBBACCGGAAGYDVVV -----CCGGAAGTGVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00421 Etv1 Original Motif Original Motif Backward 2 11 0.000932023 Species: Mus musculus Consensus sequence (original motif): MVHBACCGGAAGTVDVH Consensus sequence (reverse complement motif): HBDBACTTCCGGTBHVY Alignment: MVHBACCGGAAGTVDVH -----CCGGAAGTGVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Reverse Complement Original Motif Forward 2 11 0.00527483 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGDWDB Consensus sequence (reverse complement motif): BDWDCCGGAAGTHBBD Alignment: DBBHACTTCCGGDWDB -VVCACTTCCGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 85 Motif name: Hand1Tcfe2a Consensus sequence (original motif): BRTCTGGMWT Consensus sequence (reverse complement motif): AWRCCAGAMB ************************************************************************ Best Matches for Motif ID 85 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_primary Original Motif Reverse Complement Backward 3 10 0 Species: Mus musculus Consensus sequence (original motif): HDHDDCCAGACABBHVH Consensus sequence (reverse complement motif): HVHBVTGTCTGGDDHDD Alignment: HVHBVTGTCTGGDDHDD -----BRTCTGGMWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Reverse Complement Reverse Complement Forward 2 10 0.0172295 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGDWDB Consensus sequence (reverse complement motif): BDWDCCGGAAGTHBBD Alignment: BDWDCCGGAAGTHBBD -AWRCCAGAMB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Reverse Complement Backward 2 10 0.0178635 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: VBBDMYCATCTGVHHBH ------BRTCTGGMWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00040 Irf5_secondary Original Motif Reverse Complement Backward 3 10 0.022871 Species: Mus musculus Consensus sequence (original motif): BHDAHCGAGARTHBV Consensus sequence (reverse complement motif): VBHAKTCTCGHTHHV Alignment: VBHAKTCTCGHTHHV ---BRTCTGGMWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00038 Spdef_primary Original Motif Original Motif Backward 4 10 0.0241958 Species: Mus musculus Consensus sequence (original motif): VHRCATCCGGATHHBB Consensus sequence (reverse complement motif): VVHHATCCGGATGKHV Alignment: VHRCATCCGGATHHBB ---BRTCTGGMWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 86 Motif name: HIF1AARNT Consensus sequence (original motif): VBACGTGV Consensus sequence (reverse complement motif): VCACGTBV ************************************************************************ Best Matches for Motif ID 86 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00097 Mtf1_primary Reverse Complement Reverse Complement Forward 8 8 0 Species: Mus musculus Consensus sequence (original motif): DBDHCGTGTGCAAMDH Consensus sequence (reverse complement motif): HDYTTGCACACGDHBH Alignment: HDYTTGCACACGDHBH -------VCACGTBV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Forward 4 8 0.000574345 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD ---VBACGTGV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Original Motif Backward 9 8 0.00642455 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT -------VBACGTGV-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00084 Gmeb1_primary Original Motif Reverse Complement Backward 5 8 0.0131171 Species: Mus musculus Consensus sequence (original motif): BHBBKKACGTMMVDBVB Consensus sequence (reverse complement motif): BVVDVRYACGTRYVBHB Alignment: BVVDVRYACGTRYVBHB -----VBACGTGV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Original Motif Backward 8 8 0.014006 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: RDHDBVDTCACGTGASBHVHDH -------VCACGTBV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 87 Motif name: HNF4A Consensus sequence (original motif): RGGBCAAAGKYCA Consensus sequence (reverse complement motif): TGMYCTTTGBCCK ************************************************************************ Best Matches for Motif ID 87 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Original Motif Original Motif Backward 2 13 0.0357776 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: HHHASATCAAAGVRHHH ---RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Original Motif Original Motif Backward 2 13 0.0357792 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH ---RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Original Motif Reverse Complement Forward 4 13 0.0359011 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD ---RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Original Motif Reverse Complement Backward 2 13 0.0360786 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: BDDASATCAAAGGMDDD ---RGGBCAAAGKYCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Original Motif Backward 4 13 0.0405764 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: HVDDVCAGATGKYHBBV -RGGBCAAAGKYCA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 88 Motif name: INSM1 Consensus sequence (original motif): TGYCAGGGGGCR Consensus sequence (reverse complement motif): MGCCCCCTGMCA ************************************************************************ Best Matches for Motif ID 88 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_secondary Original Motif Reverse Complement Backward 4 12 0.00085101 Species: Mus musculus Consensus sequence (original motif): DDDTWCCCCCCGGDRVH Consensus sequence (reverse complement motif): HVKDCCGGGGGGWADDD Alignment: HVKDCCGGGGGGWADDD --TGYCAGGGGGCR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Reverse Complement Backward 6 12 0.00406431 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB TGYCAGGGGGCR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_primary Original Motif Reverse Complement Forward 3 12 0.00486866 Species: Mus musculus Consensus sequence (original motif): DDVCCCCCCHAAWHB Consensus sequence (reverse complement motif): VHWTTHGGGGGGVDD Alignment: VHWTTHGGGGGGVDD --TGYCAGGGGGCR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Original Motif Backward 6 12 0.00862553 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH TGYCAGGGGGCR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00024 Glis2_primary Original Motif Reverse Complement Forward 2 12 0.00936306 Species: Mus musculus Consensus sequence (original motif): HHHVGACCCCCCVBRD Consensus sequence (reverse complement motif): HKBBGGGGGGTCVHHH Alignment: HKBBGGGGGGTCVHHH -TGYCAGGGGGCR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 89 Motif name: Klf4 Consensus sequence (original motif): DGGGYGKGGC Consensus sequence (reverse complement motif): GCCYCMCCCD ************************************************************************ Best Matches for Motif ID 89 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Reverse Complement Forward 4 10 0 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: DHHDGGGCGRGGKHBH ---DGGGYGKGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Reverse Complement Original Motif Forward 4 10 0.0153308 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC ---GCCYCMCCCD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Original Motif Original Motif Forward 3 10 0.0186791 Species: Mus musculus Consensus sequence (original motif): BDWAGGCGTGBCHHD Consensus sequence (reverse complement motif): HHDGBCACGCCTWDB Alignment: BDWAGGCGTGBCHHD --DGGGYGKGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Reverse Complement Original Motif Forward 3 10 0.0218399 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB --GCCYCMCCCD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Reverse Complement Original Motif Forward 1 10 0.0249586 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: VHTGCGGGGGCGGH GCCYCMCCCD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 90 Motif name: Mafb Consensus sequence (original motif): GCTGACDB Consensus sequence (reverse complement motif): BHGTCAGC ************************************************************************ Best Matches for Motif ID 90 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00044 Mafk_primary Original Motif Original Motif Backward 1 8 0.00415984 Species: Mus musculus Consensus sequence (original motif): DWAAAWTGCTGACTH Consensus sequence (reverse complement motif): HAGTCAGCAWTTTWD Alignment: DWAAAWTGCTGACTH -------GCTGACDB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Original Motif Original Motif Forward 7 8 0.012743 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: HAAWDTGCTGACDWARH ------GCTGACDB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Original Motif Reverse Complement Forward 9 8 0.0222535 Species: Mus musculus Consensus sequence (original motif): BBYVVCAGCTGCBVHHD Consensus sequence (reverse complement motif): HHDVVGCAGCTGVBKVB Alignment: HHDVVGCAGCTGVBKVB --------GCTGACDB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Reverse Complement Reverse Complement Forward 5 8 0.0269322 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VHYTCCDWCCGCGTCMMTHWHV ----BHGTCAGC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Forward 5 8 0.0319883 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM ----BHGTCAGC----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 91 Motif name: MAX Consensus sequence (original motif): DAHCACGTGD Consensus sequence (reverse complement motif): BCACGTGDTD ************************************************************************ Best Matches for Motif ID 91 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Reverse Complement Backward 4 10 0 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: HHVBABCACGTGSTHD ---DAHCACGTGD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Forward 8 10 0.018544 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM -------BCACGTGDTD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Reverse Complement Forward 7 10 0.0267839 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM ------DAHCACGTGD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Reverse Complement Backward 3 10 0.0321448 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB -----BCACGTGDTD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_primary Original Motif Original Motif Backward 4 10 0.042685 Species: Mus musculus Consensus sequence (original motif): VVDBAACAGBTGBYHB Consensus sequence (reverse complement motif): BDKVCABCTGTTBDBV Alignment: VVDBAACAGBTGBYHB ---DAHCACGTGD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 92 Motif name: MIZF Consensus sequence (original motif): BAACGTCCGC Consensus sequence (reverse complement motif): GCGGACGTTV ************************************************************************ Best Matches for Motif ID 92 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00419 Spic Original Motif Reverse Complement Forward 1 10 0 Species: Mus musculus Consensus sequence (original motif): VAAAGMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRCTTTB Alignment: DWACTTCCRCTTTB BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00409 Elf5 Original Motif Reverse Complement Backward 5 10 0.00379999 Species: Mus musculus Consensus sequence (original motif): BWAHSMGGAAGTWD Consensus sequence (reverse complement motif): DWACTTCCRSDTWV Alignment: DWACTTCCRSDTWV BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Original Motif Original Motif Backward 5 10 0.0124101 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGKWTH Consensus sequence (reverse complement motif): HAWYCCGGAAGTHBBD Alignment: DBBHACTTCCGGKWTH --BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Original Motif Original Motif Forward 3 10 0.0128348 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGDWDB Consensus sequence (reverse complement motif): BDWDCCGGAAGTHBBD Alignment: DBBHACTTCCGGDWDB --BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00085 Sfpi1_primary Original Motif Reverse Complement Forward 1 10 0.0141516 Species: Mus musculus Consensus sequence (original motif): BDAWGVGGAAGTDH Consensus sequence (reverse complement motif): HDACTTCCBCWTDV Alignment: HDACTTCCBCWTDV BAACGTCCGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 93 Motif name: Myb Consensus sequence (original motif): GRCVGTTG Consensus sequence (reverse complement motif): CAACVGMC ************************************************************************ Best Matches for Motif ID 93 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00081 Mybl1_secondary Original Motif Reverse Complement Backward 5 8 0 Species: Mus musculus Consensus sequence (original motif): BBVCCAACTGCCGHB Consensus sequence (reverse complement motif): BHCGGCAGTTGGBBB Alignment: BHCGGCAGTTGGBBB ---GRCVGTTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00092 Myb_secondary Original Motif Reverse Complement Forward 5 8 0.00802457 Species: Mus musculus Consensus sequence (original motif): BDACCAACTGCCRBBH Consensus sequence (reverse complement motif): DBVKGGCAGTTGGTHB Alignment: DBVKGGCAGTTGGTHB ----GRCVGTTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Reverse Complement Original Motif Backward 4 8 0.0217124 Species: Mus musculus Consensus sequence (original motif): HDTBHHCCHTAGCAACVVDHHHH Consensus sequence (reverse complement motif): HHHHDVVGTTGCTAHGGDHBAHH Alignment: HDTBHHCCHTAGCAACVVDHHHH ------------CAACVGMC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00227 Duxl Original Motif Reverse Complement Forward 1 8 0.035989 Species: Mus musculus Consensus sequence (original motif): YRACCCAATCAACVVHV Consensus sequence (reverse complement motif): VHVVGTTGATTGGGTMK Alignment: YRACCCAATCAACVVHV GRCVGTTG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00081 Mybl1_primary Original Motif Original Motif Forward 6 8 0.0421486 Species: Mus musculus Consensus sequence (original motif): HDDDHAACCGTTAHHHD Consensus sequence (reverse complement motif): DHHHTAACGGTTHDHDH Alignment: HDDDHAACCGTTAHHHD -----GRCVGTTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 94 Motif name: Myc Consensus sequence (original motif): VGCACGTGGH Consensus sequence (reverse complement motif): DCCACGTGCV ************************************************************************ Best Matches for Motif ID 94 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Forward 3 10 0 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD --VGCACGTGGH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Forward 8 10 0.00631885 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM -------DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Backward 7 10 0.00821668 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM ------DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Reverse Complement Backward 4 10 0.0140005 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB ----VGCACGTGGH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Original Motif Backward 3 10 0.0308912 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD --VGCACGTGGH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 95 Motif name: MYCMAX Consensus sequence (original motif): RASCACGTGGT Consensus sequence (reverse complement motif): ACCACGTGSTM ************************************************************************ Best Matches for Motif ID 95 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Reverse Complement Backward 3 11 0 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: HHVBABCACGTGSTHD ---RASCACGTGGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Forward 8 11 0.025477 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM -------ACCACGTGSTM----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Original Motif Backward 7 11 0.033078 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: RDHDBVDTCACGTGASBHVHDH -----RASCACGTGGT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Original Motif Forward 4 11 0.0375583 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD ---ACCACGTGSTM--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Original Motif Forward 3 11 0.0452419 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: HVDDVCAGATGKYHBBV --RASCACGTGGT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 96 Motif name: Mycn Consensus sequence (original motif): HSCACGTGGC Consensus sequence (reverse complement motif): GCCACGTGSD ************************************************************************ Best Matches for Motif ID 96 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Forward 3 10 0 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD --HSCACGTGGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Backward 7 10 0.00783793 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM -------GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Backward 7 10 0.0132858 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM ------GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Original Motif Forward 4 10 0.0227933 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD ---GCCACGTGSD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Original Motif Forward 3 10 0.0257011 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD --HSCACGTGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 97 Motif name: Myf Consensus sequence (original motif): MRGCARCWGSWG Consensus sequence (reverse complement motif): CWSCWGMTGCKR ************************************************************************ Best Matches for Motif ID 97 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Reverse Complement Original Motif Backward 4 12 0 Species: Mus musculus Consensus sequence (original motif): BBYVVCAGCTGCBVHHD Consensus sequence (reverse complement motif): HHDVVGCAGCTGVBKVB Alignment: BBYVVCAGCTGCBVHHD --CWSCWGMTGCKR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Original Motif Forward 3 12 0.0150333 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD --CWSCWGMTGCKR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_primary Original Motif Original Motif Backward 5 12 0.0199226 Species: Mus musculus Consensus sequence (original motif): VVDBAACAGBTGBYHB Consensus sequence (reverse complement motif): BDKVCABCTGTTBDBV Alignment: VVDBAACAGBTGBYHB MRGCARCWGSWG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00081 Mybl1_secondary Original Motif Original Motif Forward 2 12 0.0255212 Species: Mus musculus Consensus sequence (original motif): BBVCCAACTGCCGHB Consensus sequence (reverse complement motif): BHCGGCAGTTGGBBB Alignment: BBVCCAACTGCCGHB -MRGCARCWGSWG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Reverse Complement Reverse Complement Forward 2 12 0.0289533 Species: Mus musculus Consensus sequence (original motif): HHDCVCAGCAKGVVD Consensus sequence (reverse complement motif): DVBCYTGCTGBGDDD Alignment: DVBCYTGCTGBGDDD -CWSCWGMTGCKR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 98 Motif name: MZF1_1-4 Consensus sequence (original motif): BGGGGA Consensus sequence (reverse complement motif): TCCCCV ************************************************************************ Best Matches for Motif ID 98 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00176 Crx Original Motif Original Motif Forward 4 6 0 Species: Mus musculus Consensus sequence (original motif): YBWDGGGGATTARCCD Consensus sequence (reverse complement motif): DGGMTAATCCCCDWBK Alignment: YBWDGGGGATTARCCD ---BGGGGA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00265 Pitx3 Reverse Complement Reverse Complement Backward 2 6 0.00193291 Species: Mus musculus Consensus sequence (original motif): VGGGGGATTAGCDDBC Consensus sequence (reverse complement motif): GBHDGCTAATCCCCCB Alignment: GBHDGCTAATCCCCCB ---------TCCCCV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00239 Obox2 Reverse Complement Reverse Complement Forward 9 6 0.00284735 Species: Mus musculus Consensus sequence (original motif): DBRGGGGGATTAAMTAH Consensus sequence (reverse complement motif): HTARTTAATCCCCCKBD Alignment: HTARTTAATCCCCCKBD --------TCCCCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00216 Obox1 Original Motif Original Motif Forward 4 6 0.00461976 Species: Mus musculus Consensus sequence (original motif): DDARGGGGATTAACDHH Consensus sequence (reverse complement motif): DHDGTTAATCCCCKTDD Alignment: DDARGGGGATTAACDHH ---BGGGGA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00160 Obox3 Reverse Complement Reverse Complement Forward 9 6 0.00641818 Species: Mus musculus Consensus sequence (original motif): HBVGGGGGATTAACWHH Consensus sequence (reverse complement motif): HHWGTTAATCCCCCBBH Alignment: HHWGTTAATCCCCCBBH --------TCCCCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 99 Motif name: MZF1_5-13 Consensus sequence (original motif): BKAGGGGDAD Consensus sequence (reverse complement motif): BTHCCCCTYB ************************************************************************ Best Matches for Motif ID 99 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_secondary Reverse Complement Original Motif Forward 4 10 0.0090535 Species: Mus musculus Consensus sequence (original motif): DDDTWCCCCCCGGDRVH Consensus sequence (reverse complement motif): HVKDCCGGGGGGWADDD Alignment: DDDTWCCCCCCGGDRVH ---BTHCCCCTYB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondary Original Motif Original Motif Forward 4 10 0.00910178 Species: Mus musculus Consensus sequence (original motif): BBHBGAGTGGGAHHDB Consensus sequence (reverse complement motif): BHHDTCCCACTCBDBV Alignment: BBHBGAGTGGGAHHDB ---BKAGGGGDAD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_secondary Original Motif Original Motif Forward 6 10 0.0101177 Species: Mus musculus Consensus sequence (original motif): DDBVHATAGGGGRBRMB Consensus sequence (reverse complement motif): BYMBKCCCCTATDVBHD Alignment: DDBVHATAGGGGRBRMB -----BKAGGGGDAD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Reverse Complement Forward 1 10 0.0103225 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD BKAGGGGDAD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondary Original Motif Reverse Complement Forward 6 10 0.0126235 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: HVDVGGGHGGGGDBHB -----BKAGGGGDAD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 100 Motif name: NFE2L2 Consensus sequence (original motif): RTGACWHAGCA Consensus sequence (reverse complement motif): TGCTDWGTCAK ************************************************************************ Best Matches for Motif ID 100 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00103 Jundm2_secondary Original Motif Reverse Complement Forward 4 11 0.0252843 Species: Mus musculus Consensus sequence (original motif): VDKDRTGASTCAYHDH Consensus sequence (reverse complement motif): HDDKTGASTCAKHRDB Alignment: HDDKTGASTCAKHRDB ---RTGACWHAGCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00020 Atf1_secondary Original Motif Original Motif Backward 2 11 0.0449032 Species: Mus musculus Consensus sequence (original motif): VDATGACGADYADH Consensus sequence (reverse complement motif): DDTMDTCGTCATDV Alignment: VDATGACGADYADH --RTGACWHAGCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_secondary Original Motif Reverse Complement Forward 4 11 0.0453065 Species: Mus musculus Consensus sequence (original motif): VBVBCSGGGTCAVBBH Consensus sequence (reverse complement motif): HVBVTGACCCSGBVBV Alignment: HVBVTGACCCSGBVBV ---RTGACWHAGCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Reverse Complement Original Motif Backward 2 11 0.04674 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: HAAWDTGCTGACDWARH -----TGCTDWGTCAK- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Reverse Complement Backward 1 11 0.0473193 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: RDHDBVDTCACGTGASBHVHDH -----------RTGACWHAGCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 101 Motif name: NFIC Consensus sequence (original motif): TTGGCD Consensus sequence (reverse complement motif): DGCCAA ************************************************************************ Best Matches for Motif ID 101 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_primary Original Motif Reverse Complement Forward 7 6 0 Species: Mus musculus Consensus sequence (original motif): DBBATGCCAACCHVHH Consensus sequence (reverse complement motif): DDBHGGTTGGCATVBD Alignment: DDBHGGTTGGCATVBD ------TTGGCD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Reverse Complement Reverse Complement Forward 7 6 0.0174701 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH ------DGCCAA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_secondary Original Motif Reverse Complement Forward 5 6 0.0231918 Species: Mus musculus Consensus sequence (original motif): HBHWYGGCGCCAMDVBB Consensus sequence (reverse complement motif): BBBDYTGGCGCCKWDBD Alignment: BBBDYTGGCGCCKWDBD ----TTGGCD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_secondary Original Motif Reverse Complement Forward 5 6 0.0258343 Species: Mus musculus Consensus sequence (original motif): HVBWYGGCGCCAADVBB Consensus sequence (reverse complement motif): BBBDTTGGCGCCKWVVD Alignment: BBBDTTGGCGCCKWVVD ----TTGGCD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Reverse Complement Backward 2 6 0.0266372 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: HDGTCGCGTGDCVB -------TTGGCD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 102 Motif name: NF-kappaB Consensus sequence (original motif): GGGRMTTYCC Consensus sequence (reverse complement motif): GGMAAYKCCC ************************************************************************ Best Matches for Motif ID 102 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_secondary Original Motif Reverse Complement Backward 1 10 0.0379362 Species: Mus musculus Consensus sequence (original motif): DKKWDACCCCCAHTDDV Consensus sequence (reverse complement motif): VDDAHTGGGGGTHWYYD Alignment: VDDAHTGGGGGTHWYYD -------GGGRMTTYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00176 Crx Reverse Complement Reverse Complement Forward 2 10 0.0387084 Species: Mus musculus Consensus sequence (original motif): YBWDGGGGATTARCCD Consensus sequence (reverse complement motif): DGGMTAATCCCCDWBK Alignment: DGGMTAATCCCCDWBK -GGMAAYKCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00265 Pitx3 Reverse Complement Reverse Complement Backward 4 10 0.0428696 Species: Mus musculus Consensus sequence (original motif): VGGGGGATTAGCDDBC Consensus sequence (reverse complement motif): GBHDGCTAATCCCCCB Alignment: GBHDGCTAATCCCCCB ---GGMAAYKCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00422 Etv3 Original Motif Reverse Complement Forward 6 10 0.0433644 Species: Mus musculus Consensus sequence (original motif): VBBHAYTTCCGGTHDH Consensus sequence (reverse complement motif): DHHACCGGAAKTHBBB Alignment: DHHACCGGAAKTHBBB -----GGGRMTTYCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_secondary Reverse Complement Original Motif Backward 7 10 0.0443841 Species: Mus musculus Consensus sequence (original motif): DBDDRTGCCCAWDHDV Consensus sequence (reverse complement motif): VHHDWTGGGCAMDHBH Alignment: DBDDRTGCCCAWDHDV GGMAAYKCCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 103 Motif name: NFKB1 Consensus sequence (original motif): GGGGRTTCCCC Consensus sequence (reverse complement motif): GGGGAAKCCCC ************************************************************************ Best Matches for Motif ID 103 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_secondary Original Motif Reverse Complement Backward 1 11 0.0371794 Species: Mus musculus Consensus sequence (original motif): DKKWDACCCCCAHTDDV Consensus sequence (reverse complement motif): VDDAHTGGGGGTHWYYD Alignment: VDDAHTGGGGGTHWYYD ------GGGGRTTCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00088 Plagl1_secondary Original Motif Original Motif Backward 3 11 0.0407901 Species: Mus musculus Consensus sequence (original motif): DBHGGGGGGTACCHHHD Consensus sequence (reverse complement motif): DHDDGGTACCCCCCHBH Alignment: DBHGGGGGGTACCHHHD ----GGGGRTTCCCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00088 Plagl1_primary Original Motif Original Motif Forward 3 11 0.0459696 Species: Mus musculus Consensus sequence (original motif): BHDGGGGSSCCCCBVV Consensus sequence (reverse complement motif): VBVGGGGSSCCCCHHV Alignment: BHDGGGGSSCCCCBVV --GGGGRTTCCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00176 Crx Reverse Complement Reverse Complement Forward 2 11 0.0464973 Species: Mus musculus Consensus sequence (original motif): YBWDGGGGATTARCCD Consensus sequence (reverse complement motif): DGGMTAATCCCCDWBK Alignment: DGGMTAATCCCCDWBK -GGGGAAKCCCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00265 Pitx3 Reverse Complement Reverse Complement Backward 3 11 0.048533 Species: Mus musculus Consensus sequence (original motif): VGGGGGATTAGCDDBC Consensus sequence (reverse complement motif): GBHDGCTAATCCCCCB Alignment: GBHDGCTAATCCCCCB ---GGGGAAKCCCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 104 Motif name: NFYA Consensus sequence (original motif): VBBRRCCAATSRGVDB Consensus sequence (reverse complement motif): BHVCKSATTGGMKBVV ************************************************************************ Best Matches for Motif ID 104 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_secondary Reverse Complement Reverse Complement Forward 1 16 0.0368059 Species: Mus musculus Consensus sequence (original motif): VDVVATCAATCRBBHD Consensus sequence (reverse complement motif): DHVBKGATTGATVBDV Alignment: DHVBKGATTGATVBDV BHVCKSATTGGMKBVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00220 Nkx1-1 Reverse Complement Original Motif Backward 1 16 0.0372416 Species: Mus musculus Consensus sequence (original motif): WGHRCYAATTRGYGSDV Consensus sequence (reverse complement motif): BHSCMCKAATTMGMDCW Alignment: WGHRCYAATTRGYGSDV -BHVCKSATTGGMKBVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00156 Msx2 Original Motif Original Motif Backward 2 16 0.0372531 Species: Mus musculus Consensus sequence (original motif): VVDGACYAATTAGYDHT Consensus sequence (reverse complement motif): ADHKCTAATTKGTCDBV Alignment: VVDGACYAATTAGYDHT VBBRRCCAATSRGVDB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00055 Hbp1_secondary Original Motif Reverse Complement Backward 2 16 0.0374245 Species: Mus musculus Consensus sequence (original motif): DDDYCCCATTGTVHABH Consensus sequence (reverse complement motif): HBTHVACAATGGGMDHD Alignment: HBTHVACAATGGGMDHD VBBRRCCAATSRGVDB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00162 Evx1 Reverse Complement Original Motif Forward 2 16 0.0384724 Species: Mus musculus Consensus sequence (original motif): WVHVCTAATTAGYBVDV Consensus sequence (reverse complement motif): VDVBMCTAATTAGBHVW Alignment: WVHVCTAATTAGYBVDV -BHVCKSATTGGMKBVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 105 Motif name: NHLH1 Consensus sequence (original motif): VCGCAGCTGCGB Consensus sequence (reverse complement motif): VCGCAGCTGCGV ************************************************************************ Best Matches for Motif ID 105 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Original Motif Reverse Complement Backward 3 12 0 Species: Mus musculus Consensus sequence (original motif): BBYVVCAGCTGCBVHHD Consensus sequence (reverse complement motif): HHDVVGCAGCTGVBKVB Alignment: HHDVVGCAGCTGVBKVB ---VCGCAGCTGCGB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Original Motif Backward 4 12 0.0128197 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD --VCGCAGCTGCGV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Reverse Complement Forward 4 12 0.0308854 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: VBBDMYCATCTGVHHBH ---VCGCAGCTGCGB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_primary Original Motif Original Motif Forward 4 12 0.0327062 Species: Mus musculus Consensus sequence (original motif): VVDBAACAGBTGBYHB Consensus sequence (reverse complement motif): BDKVCABCTGTTBDBV Alignment: VVDBAACAGBTGBYHB ---VCGCAGCTGCGB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_secondary Reverse Complement Reverse Complement Forward 2 12 0.0363264 Species: Mus musculus Consensus sequence (original motif): BHDCVCAGCAGGHVD Consensus sequence (reverse complement motif): DVHCCTGCTGBGDDB Alignment: DVHCCTGCTGBGDDB -VCGCAGCTGCGV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 106 Motif name: Nkx3-2 Consensus sequence (original motif): BTRAGTGVV Consensus sequence (reverse complement motif): BVCACTKAH ************************************************************************ Best Matches for Motif ID 106 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00147 Nkx2-6 Original Motif Reverse Complement Backward 4 9 0 Species: Mus musculus Consensus sequence (original motif): DDADCCACTTAAVHTT Consensus sequence (reverse complement motif): AAHVTTAAGTGGHTDD Alignment: AAHVTTAAGTGGHTDD ----BTRAGTGVV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00228 Bapx1 Reverse Complement Original Motif Backward 5 9 0.00188665 Species: Mus musculus Consensus sequence (original motif): VHHAACCACTTAAVVAH Consensus sequence (reverse complement motif): DTBVTTAAGTGGTTHHV Alignment: VHHAACCACTTAAVVAH ----BVCACTKAH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Reverse Complement Original Motif Forward 4 9 0.00571144 Species: Mus musculus Consensus sequence (original motif): HDADCCACTTRAAWTT Consensus sequence (reverse complement motif): AAWTTMAAGTGGHTDH Alignment: HDADCCACTTRAAWTT ---BVCACTKAH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00107 Nkx2-4 Reverse Complement Original Motif Forward 4 9 0.00990848 Species: Mus musculus Consensus sequence (original motif): HDAVCCACTTRAMWTT Consensus sequence (reverse complement motif): AAWYTMAAGTGGVTDH Alignment: HDAVCCACTTRAMWTT ---BVCACTKAH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Reverse Complement Original Motif Forward 4 9 0.0125254 Species: Mus musculus Consensus sequence (original motif): BVABCCACTTGAMHTT Consensus sequence (reverse complement motif): AAHYTCAAGTGGBTBV Alignment: BVABCCACTTGAMHTT ---BVCACTKAH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 107 Motif name: NR2F1 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA ************************************************************************ Best Matches for Motif ID 107 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00083 Tcf7l2_primary Original Motif Original Motif Backward 3 14 0.0452364 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATSTDDV Consensus sequence (reverse complement motif): BDDASATCAAAGGMDDD Alignment: DDDYCCTTTGATSTDDV -TGAMCTTTGMMCYT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00067 Lef1_primary Reverse Complement Reverse Complement Backward 2 14 0.0453449 Species: Mus musculus Consensus sequence (original motif): DDDYCCTTTGATCTDDV Consensus sequence (reverse complement motif): VDDAGATCAAAGGKDDD Alignment: VDDAGATCAAAGGKDDD --AKGYYCAAAGRTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Original Motif Reverse Complement Forward 8 14 0.0461358 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH -------TGAMCTTTGMMCYT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00054 Tcf7_primary Reverse Complement Original Motif Backward 2 14 0.0461768 Species: Mus musculus Consensus sequence (original motif): BHHASATCAAAGGAHHH Consensus sequence (reverse complement motif): HHHTCCTTTGATSTHHV Alignment: BHHASATCAAAGGAHHH --AKGYYCAAAGRTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00058 Tcf3_primary Reverse Complement Original Motif Backward 2 14 0.0473628 Species: Mus musculus Consensus sequence (original motif): HHHASATCAAAGVRHHH Consensus sequence (reverse complement motif): HHHKVCTTTGATSTHHH Alignment: HHHASATCAAAGVRHHH --AKGYYCAAAGRTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 108 Motif name: NR4A2 Consensus sequence (original motif): AAGGTCAC Consensus sequence (reverse complement motif): GTGACCTT ************************************************************************ Best Matches for Motif ID 108 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Original Motif Original Motif Backward 4 8 0 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCACVHD Consensus sequence (reverse complement motif): HHVGTGACCTTTDVDD Alignment: DHBHAAAGGTCACVHD -----AAGGTCAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_primary Original Motif Original Motif Backward 4 8 0.0074527 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCAHVHB Consensus sequence (reverse complement motif): BHVDTGACCTTTDVDD Alignment: DHBHAAAGGTCAHVHB -----AAGGTCAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Original Motif Original Motif Backward 5 8 0.01542 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: DHDBCAAGGTCAHVBDH -----AAGGTCAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_secondary Original Motif Original Motif Forward 6 8 0.0395644 Species: Mus musculus Consensus sequence (original motif): VBVBCSGGGTCAVBBH Consensus sequence (reverse complement motif): HVBVTGACCCSGBVBV Alignment: VBVBCSGGGTCAVBBH -----AAGGTCAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00082 Zfp187_secondary Reverse Complement Original Motif Forward 1 8 0.0407874 Species: Mus musculus Consensus sequence (original motif): DDGMCCTBGTCCHYHV Consensus sequence (reverse complement motif): VHMDGGACVAGGRCDH Alignment: DDGMCCTBGTCCHYHV GTGACCTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 109 Motif name: Pax5 Consensus sequence (original motif): DGVBCABTGDWGCGKRRCSR Consensus sequence (reverse complement motif): MSGKKRCGCWDCABTGBBCD ************************************************************************ Best Matches for Motif ID 109 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Original Motif Original Motif Backward 2 20 0.0499537 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB -DGVBCABTGDWGCGKRRCSR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Original Motif Reverse Complement Forward 1 20 0.0520196 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW DGVBCABTGDWGCGKRRCSR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Original Motif Reverse Complement Backward 2 20 0.0542764 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK -DGVBCABTGDWGCGKRRCSR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Reverse Complement Reverse Complement Forward 3 20 0.0560636 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR --MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Reverse Complement Forward 1 20 0.0595671 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: HHBSHTCGTGRGTGGKGDBVWMV DGVBCABTGDWGCGKRRCSR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 110 Motif name: PLAG1 Consensus sequence (original motif): GGGGCCCAAGGGGG Consensus sequence (reverse complement motif): CCCCCTTGGGCCCC ************************************************************************ Best Matches for Motif ID 110 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_primary Reverse Complement Reverse Complement Forward 1 14 0.0499525 Species: Mus musculus Consensus sequence (original motif): BHCCCCCGGGGGGG Consensus sequence (reverse complement motif): CCCCCCCGGGGGHB Alignment: CCCCCCCGGGGGHB CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Reverse Complement Original Motif Backward 1 14 0.0540613 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB ---------CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_primary Reverse Complement Original Motif Backward 1 14 0.0548411 Species: Mus musculus Consensus sequence (original motif): BMCCCCCGGGGGGGB Consensus sequence (reverse complement motif): VCCCCCCCGGGGGRB Alignment: VCCCCCCCGGGGGRB -CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Original Motif Reverse Complement Backward 1 14 0.0556785 Species: Mus musculus Consensus sequence (original motif): HHRCCBBWGGDCDB Consensus sequence (reverse complement motif): BDGHCCWBVGGKDH Alignment: HHRCCBBWGGDCDB GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_primary Reverse Complement Original Motif Backward 1 14 0.056976 Species: Mus musculus Consensus sequence (original motif): BMCCCCCGGGGGGGB Consensus sequence (reverse complement motif): VCCCCCCCGGGGGRB Alignment: VCCCCCCCGGGGGRB -CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 111 Motif name: PPARG Consensus sequence (original motif): STAGGTCACBGTGACCYABT Consensus sequence (reverse complement motif): ABTMGGTCACBGTGACCTAS ************************************************************************ Best Matches for Motif ID 111 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_secondary Reverse Complement Reverse Complement Backward 2 20 0.0610439 Species: Mus musculus Consensus sequence (original motif): VCTBHBVCTTGGWTACVVVVVDB Consensus sequence (reverse complement motif): BDBBVBVGTAWCCAAGVBHBAGB Alignment: BDBBVBVGTAWCCAAGVBHBAGB --ABTMGGTCACBGTGACCTAS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Reverse Complement Original Motif Forward 3 20 0.0641524 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB --ABTMGGTCACBGTGACCTAS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Reverse Complement Original Motif Backward 1 20 0.0680441 Species: Mus musculus Consensus sequence (original motif): VDWDARRGACGCGGWHGGAKHV Consensus sequence (reverse complement motif): VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV --ABTMGGTCACBGTGACCTAS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Reverse Complement Reverse Complement Forward 3 20 0.0685319 Species: Mus musculus Consensus sequence (original motif): HDTBHHCCHTAGCAACVVDHHHH Consensus sequence (reverse complement motif): HHHHDVVGTTGCTAHGGDHBAHH Alignment: HHHHDVVGTTGCTAHGGDHBAHH --ABTMGGTCACBGTGACCTAS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Reverse Complement Forward 4 20 0.0686444 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH ---STAGGTCACBGTGACCYABT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 112 Motif name: RELA Consensus sequence (original motif): GGGRATTTCC Consensus sequence (reverse complement motif): GGAAATKCCC ************************************************************************ Best Matches for Motif ID 112 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00424 Gm4881 Original Motif Original Motif Forward 1 10 0.0152117 Species: Mus musculus Consensus sequence (original motif): VBBHAYTTCCGGTDDD Consensus sequence (reverse complement motif): DHDACCGGAAMTHBVB Alignment: VBBHAYTTCCGGTDDD GGGRATTTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00416 Fli1 Original Motif Original Motif Backward 7 10 0.0156652 Species: Mus musculus Consensus sequence (original motif): VBBVAYTTCCGGTDDH Consensus sequence (reverse complement motif): DHDACCGGAAKTBBVV Alignment: VBBVAYTTCCGGTDDH GGGRATTTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00422 Etv3 Original Motif Original Motif Forward 1 10 0.0163451 Species: Mus musculus Consensus sequence (original motif): VBBHAYTTCCGGTHDH Consensus sequence (reverse complement motif): DHHACCGGAAKTHBBB Alignment: VBBHAYTTCCGGTHDH GGGRATTTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00415 Elk4 Original Motif Original Motif Backward 7 10 0.018032 Species: Mus musculus Consensus sequence (original motif): VBBHRYTTCCGGTDDH Consensus sequence (reverse complement motif): DHDACCGGAAKKHBVB Alignment: VBBHRYTTCCGGTDDH GGGRATTTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00411 Erg Original Motif Original Motif Forward 1 10 0.0206291 Species: Mus musculus Consensus sequence (original motif): VBBVAYTTCCGGTDDB Consensus sequence (reverse complement motif): BDDACCGGAAKTVBVB Alignment: VBBVAYTTCCGGTDDB GGGRATTTCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 113 Motif name: REST Consensus sequence (original motif): TTCAGCACCATGGACAGCKCC Consensus sequence (reverse complement motif): GGYGCTGTCCATGGTGCTGAA ************************************************************************ Best Matches for Motif ID 113 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Original Motif Original Motif Forward 3 21 0.0699178 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB --TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Reverse Complement Forward 1 21 0.0734685 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH GGYGCTGTCCATGGTGCTGAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v016060_secondary Original Motif Original Motif Forward 2 21 0.0740652 Species: Mus musculus Consensus sequence (original motif): VYWVVHCRCCACMCACGAHSBHH Consensus sequence (reverse complement motif): HHBSHTCGTGRGTGGKGDBVWMV Alignment: VYWVVHCRCCACMCACGAHSBHH -TTCAGCACCATGGACAGCKCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Backward 1 21 0.0750152 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH --TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Original Motif Backward 3 21 0.0751449 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: BHCBCBCCGGGTGGTCYHVHDCH GGYGCTGTCCATGGTGCTGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 114 Motif name: RUNX1 Consensus sequence (original motif): BBYTGTGGTTT Consensus sequence (reverse complement motif): AAACCACAKVB ************************************************************************ Best Matches for Motif ID 114 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_primary Reverse Complement Original Motif Forward 4 11 0.0126586 Species: Mus musculus Consensus sequence (original motif): HVVHACCCGCATVDHD Consensus sequence (reverse complement motif): DHDVATGCGGGTHVVH Alignment: HVVHACCCGCATVDHD ---AAACCACAKVB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_secondary Original Motif Reverse Complement Forward 3 11 0.0139444 Species: Mus musculus Consensus sequence (original motif): VVDAATAACAAAVVB Consensus sequence (reverse complement motif): BVVTTTGTTATTDBB Alignment: BVVTTTGTTATTDBB --BBYTGTGGTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Original Motif Original Motif Forward 7 11 0.0141619 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB ------BBYTGTGGTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_secondary Original Motif Reverse Complement Forward 3 11 0.015194 Species: Mus musculus Consensus sequence (original motif): BDDRVGACCACCHBDVB Consensus sequence (reverse complement motif): BBDVHGGTGGTCBKDDB Alignment: BBDVHGGTGGTCBKDDB --BBYTGTGGTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00025 Foxk1_secondary Reverse Complement Original Motif Backward 1 11 0.0158291 Species: Mus musculus Consensus sequence (original motif): HHHAYAAYAACAHHH Consensus sequence (reverse complement motif): HDDTGTTKTTKTHHD Alignment: HHHAYAAYAACAHHH ----AAACCACAKVB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 115 Motif name: RXRRAR_DR5 Consensus sequence (original motif): RGKTCABVVRGAGGTCA Consensus sequence (reverse complement motif): TGACCTCKVVBTGAYCK ************************************************************************ Best Matches for Motif ID 115 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Original Motif Original Motif Forward 1 17 0.0585087 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB RGKTCABVVRGAGGTCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_secondary Original Motif Original Motif Backward 1 17 0.0709955 Species: Mus musculus Consensus sequence (original motif): GTVBDAATTGTVTGHGDDHKVB Consensus sequence (reverse complement motif): VVYDDDCHCAVACAATTDBVAC Alignment: GTVBDAATTGTVTGHGDDHKVB -----RGKTCABVVRGAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Reverse Complement Forward 1 17 0.075055 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: DVVTTVGTGGGHGGYAMHWHHHY RGKTCABVVRGAGGTCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Original Motif Original Motif Forward 7 17 0.0758824 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB ------RGKTCABVVRGAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Reverse Complement Original Motif Backward 6 17 0.0759953 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH TGACCTCKVVBTGAYCK----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 116 Motif name: SP1 Consensus sequence (original motif): CCCCKCCCCC Consensus sequence (reverse complement motif): GGGGGYGGGG ************************************************************************ Best Matches for Motif ID 116 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Original Motif Original Motif Backward 4 10 0.0231018 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: DBCCCCCCCCCCMYC --CCCCKCCCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Backward 3 10 0.0303207 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD ----CCCCKCCCCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Reverse Complement Reverse Complement Forward 5 10 0.0323007 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: HHHHDGGGGCGGDBHDV ----GGGGGYGGGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_secondary Reverse Complement Reverse Complement Forward 3 10 0.0340973 Species: Mus musculus Consensus sequence (original motif): BHVDCCCCDCCCBDBH Consensus sequence (reverse complement motif): HVDVGGGHGGGGDBHB Alignment: HVDVGGGHGGGGDBHB --GGGGGYGGGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Reverse Complement Reverse Complement Backward 3 10 0.0351051 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: BHHHWGGGGCGGBBVH ----GGGGGYGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 117 Motif name: Spz1 Consensus sequence (original motif): AGGGTAWCAGC Consensus sequence (reverse complement motif): GCTGWTACCCT ************************************************************************ Best Matches for Motif ID 117 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00388 Six6_2267.4 Reverse Complement Reverse Complement Forward 4 11 0.00457598 Species: Mus musculus Consensus sequence (original motif): DATRGGGTATCAHDWHT Consensus sequence (reverse complement motif): AHWDHTGATACCCKATD Alignment: AHWDHTGATACCCKATD ---GCTGWTACCCT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00195 Six3 Original Motif Original Motif Backward 4 11 0.00651969 Species: Mus musculus Consensus sequence (original motif): DATRGGGTATCAHHWHT Consensus sequence (reverse complement motif): AHWHDTGATACCCKATH Alignment: DATRGGGTATCAHHWHT ---AGGGTAWCAGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00388 Six6_2267.5 Reverse Complement Reverse Complement Forward 4 11 0.0083787 Species: Mus musculus Consensus sequence (original motif): DDDRGGGTATCAWHWHT Consensus sequence (reverse complement motif): AHWHWTGATACCCKDDD Alignment: AHWHWTGATACCCKDDD ---GCTGWTACCCT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00192 Six1 Original Motif Original Motif Backward 4 11 0.0113267 Species: Mus musculus Consensus sequence (original motif): DHDRGGGTATCAHDHBT Consensus sequence (reverse complement motif): AVHDHTGATACCCMDHH Alignment: DHDRGGGTATCAHDHBT ---AGGGTAWCAGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00159 Six2 Original Motif Original Motif Backward 4 11 0.0117598 Species: Mus musculus Consensus sequence (original motif): DAKRGGGTATCACDWHT Consensus sequence (reverse complement motif): AHWDGTGATACCCMRTD Alignment: DAKRGGGTATCACDWHT ---AGGGTAWCAGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 118 Motif name: SRF Consensus sequence (original motif): GCCCATATATGG Consensus sequence (reverse complement motif): CCATATATGGGC ************************************************************************ Best Matches for Motif ID 118 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_primary Reverse Complement Reverse Complement Backward 1 12 0 Species: Mus musculus Consensus sequence (original motif): HHCCWTATAWGGHA Consensus sequence (reverse complement motif): THCCWTATAWGGHH Alignment: THCCWTATAWGGHH --CCATATATGGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_secondary Original Motif Reverse Complement Backward 2 12 0.0318541 Species: Mus musculus Consensus sequence (original motif): DDBVHATAGGGGRBRMB Consensus sequence (reverse complement motif): BYMBKCCCCTATDVBHD Alignment: BYMBKCCCCTATDVBHD ----GCCCATATATGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00080 Gata5_primary Reverse Complement Original Motif Backward 3 12 0.0503431 Species: Mus musculus Consensus sequence (original motif): HDDDCTGATAAGRVDDD Consensus sequence (reverse complement motif): DDHBKCTTATCAGDDDH Alignment: HDDDCTGATAAGRVDDD ---CCATATATGGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00133 Cdx2 Original Motif Original Motif Backward 2 12 0.0528496 Species: Mus musculus Consensus sequence (original motif): DVVGGYMATAAAAHKH Consensus sequence (reverse complement motif): HRHTTTTATYMCCVBD Alignment: DVVGGYMATAAAAHKH ---GCCCATATATGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00213 Hoxa9 Reverse Complement Reverse Complement Backward 3 12 0.0533104 Species: Mus musculus Consensus sequence (original motif): DCGGYCATWAAAWTADW Consensus sequence (reverse complement motif): WDTAWTTTWATGKCCGD Alignment: WDTAWTTTWATGKCCGD ---CCATATATGGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 119 Motif name: Stat3 Consensus sequence (original motif): TTCCAGGAAG Consensus sequence (reverse complement motif): CTTCCTGGAA ************************************************************************ Best Matches for Motif ID 119 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_primary Reverse Complement Reverse Complement Forward 4 10 0 Species: Mus musculus Consensus sequence (original motif): DCTTTCKAGGAATHHV Consensus sequence (reverse complement motif): VHHATTCCTYGAAAGD Alignment: VHHATTCCTYGAAAGD ---CTTCCTGGAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00413 Elf4 Reverse Complement Original Motif Backward 2 10 0.00702689 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGKWTH Consensus sequence (reverse complement motif): HAWYCCGGAAGTHBBD Alignment: DBBHACTTCCGGKWTH -----CTTCCTGGAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00410 Elk1 Reverse Complement Reverse Complement Forward 6 10 0.00785398 Species: Mus musculus Consensus sequence (original motif): VVHBACCGGAAGTDBHD Consensus sequence (reverse complement motif): DHBDACTTCCGGTVHVB Alignment: DHBDACTTCCGGTVHVB -----CTTCCTGGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_primary Reverse Complement Reverse Complement Backward 3 10 0.00988664 Species: Mus musculus Consensus sequence (original motif): HVHHACCGGAAGTDHHV Consensus sequence (reverse complement motif): BHHHACTTCCGGTHHBD Alignment: BHHHACTTCCGGTHHBD -----CTTCCTGGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Reverse Complement Original Motif Forward 6 10 0.0105941 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGDWDB Consensus sequence (reverse complement motif): BDWDCCGGAAGTHBBD Alignment: DBBHACTTCCGGDWDB -----CTTCCTGGAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 120 Motif name: T Consensus sequence (original motif): CTAGGTGTGAA Consensus sequence (reverse complement motif): TTCACACCTAG ************************************************************************ Best Matches for Motif ID 120 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_primary Original Motif Original Motif Forward 3 11 0 Species: Mus musculus Consensus sequence (original motif): BVHDAGGTGTGAAAHHH Consensus sequence (reverse complement motif): HHHTTTCACACCTDHBV Alignment: BVHDAGGTGTGAAAHHH --CTAGGTGTGAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00258 Tgif2 Reverse Complement Reverse Complement Forward 4 11 0.0253823 Species: Mus musculus Consensus sequence (original motif): AABBAGCTGTCAAWVV Consensus sequence (reverse complement motif): VBWTTGACAGCTVBTT Alignment: VBWTTGACAGCTVBTT ---TTCACACCTAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00199 Six4 Original Motif Reverse Complement Forward 3 11 0.0278802 Species: Mus musculus Consensus sequence (original motif): ADDHATGACACCBHBBV Consensus sequence (reverse complement motif): BBVHVGGTGTCATHDDT Alignment: BBVHVGGTGTCATHDDT --CTAGGTGTGAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00186 Meis1 Original Motif Original Motif Backward 4 11 0.0349057 Species: Mus musculus Consensus sequence (original motif): WAVBASCTGTCAAWVH Consensus sequence (reverse complement motif): DBWTTGACAGSTBVTW Alignment: WAVBASCTGTCAAWVH --CTAGGTGTGAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Original Motif Backward 3 11 0.0381312 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD ----CTAGGTGTGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 121 Motif name: TAL1TCF3 Consensus sequence (original motif): HVAMCATCTGKT Consensus sequence (reverse complement motif): ARCAGATGRTVD ************************************************************************ Best Matches for Motif ID 121 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Reverse Complement Forward 3 12 0.0117104 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: VBBDMYCATCTGVHHBH --HVAMCATCTGKT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_primary Original Motif Reverse Complement Forward 1 12 0.0121214 Species: Mus musculus Consensus sequence (original motif): VVDBAACAGBTGBYHB Consensus sequence (reverse complement motif): BDKVCABCTGTTBDBV Alignment: VVDBAACAGBTGBYHB HVAMCATCTGKT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Reverse Complement Reverse Complement Backward 1 12 0.024819 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: HHVBABCACGTGSTHD ----ARCAGATGRTVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Reverse Complement Reverse Complement Backward 2 12 0.025362 Species: Mus musculus Consensus sequence (original motif): BBYVVCAGCTGCBVHHD Consensus sequence (reverse complement motif): HHDVVGCAGCTGVBKVB Alignment: HHDVVGCAGCTGVBKVB ----ARCAGATGRTVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Original Motif Backward 3 12 0.0322545 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD ---ARCAGATGRTVD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 122 Motif name: Tcfcp2l1 Consensus sequence (original motif): CCAGYYHVADCCRG Consensus sequence (reverse complement motif): CKGGDTBDMMCTGG ************************************************************************ Best Matches for Motif ID 122 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_secondary Original Motif Original Motif Backward 5 14 0.0527249 Species: Mus musculus Consensus sequence (original motif): HBHDVBWGATHBTATCRVBHHH Consensus sequence (reverse complement motif): HHHBBMGATAVHATCWVVDHVH Alignment: HBHDVBWGATHBTATCRVBHHH ----CCAGYYHVADCCRG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Original Motif Original Motif Backward 1 14 0.0551691 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH --------CCAGYYHVADCCRG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Original Motif Original Motif Backward 1 14 0.0560983 Species: Mus musculus Consensus sequence (original motif): HHRCCBBWGGDCDB Consensus sequence (reverse complement motif): BDGHCCWBVGGKDH Alignment: HHRCCBBWGGDCDB CCAGYYHVADCCRG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_secondary Original Motif Original Motif Backward 3 14 0.0566467 Species: Mus musculus Consensus sequence (original motif): CYDBYWTCCSMHBVVH Consensus sequence (reverse complement motif): DBVVDRSGGAWKVHKG Alignment: CYDBYWTCCSMHBVVH CCAGYYHVADCCRG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00075 Sox15_secondary Original Motif Reverse Complement Backward 1 14 0.0577636 Species: Mus musculus Consensus sequence (original motif): BBVAATGDMATTHVA Consensus sequence (reverse complement motif): TVDAATYDCATTVVV Alignment: BBVAATGDMATTHVA -CCAGYYHVADCCRG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 123 Motif name: TFAP2A Consensus sequence (original motif): GCCBBVRGS Consensus sequence (reverse complement motif): SCMVBBGGC ************************************************************************ Best Matches for Motif ID 123 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_secondary Original Motif Reverse Complement Forward 4 9 0.0115546 Species: Mus musculus Consensus sequence (original motif): DTWGCCKSMGGCRHH Consensus sequence (reverse complement motif): HHKGCCYSRGGCWAD Alignment: HHKGCCYSRGGCWAD ---GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_primary Original Motif Original Motif Forward 3 9 0.0150447 Species: Mus musculus Consensus sequence (original motif): DYGCCYBARGGCAH Consensus sequence (reverse complement motif): HTGCCMTVKGGCMD Alignment: DYGCCYBARGGCAH --GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_primary Original Motif Original Motif Forward 4 9 0.0151527 Species: Mus musculus Consensus sequence (original motif): WDHSCCYSRGGSRAD Consensus sequence (reverse complement motif): DTMSCCKSMGGSHDW Alignment: WDHSCCYSRGGSRAD ---GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_primary Original Motif Original Motif Backward 4 9 0.016909 Species: Mus musculus Consensus sequence (original motif): WHHSCCYSRGGSDAD Consensus sequence (reverse complement motif): DTHSCCKSMGGSHHW Alignment: WHHSCCYSRGGSDAD ---GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_secondary Original Motif Original Motif Forward 3 9 0.0170259 Species: Mus musculus Consensus sequence (original motif): BHGCCCDAGGGCWD Consensus sequence (reverse complement motif): HWGCCCTDGGGCDB Alignment: BHGCCCDAGGGCWD --GCCBBVRGS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 124 Motif name: TLX1NFIC Consensus sequence (original motif): TGGCASBDHGCCAA Consensus sequence (reverse complement motif): TTGGCHDBSTGCCA ************************************************************************ Best Matches for Motif ID 124 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_primary Reverse Complement Reverse Complement Forward 1 14 0.0679595 Species: Mus musculus Consensus sequence (original motif): DYGCCYBARGGCAH Consensus sequence (reverse complement motif): HTGCCMTVKGGCMD Alignment: HTGCCMTVKGGCMD TTGGCHDBSTGCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00010 Tcfap2b_secondary Original Motif Reverse Complement Forward 2 14 0.0689546 Species: Mus musculus Consensus sequence (original motif): DTWGCCKSMGGCRHH Consensus sequence (reverse complement motif): HHKGCCYSRGGCWAD Alignment: HHKGCCYSRGGCWAD -TGGCASBDHGCCAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00098 Rfx3_primary Original Motif Original Motif Backward 1 14 0.0749445 Species: Mus musculus Consensus sequence (original motif): HDTBHHCCHTAGCAACVVDHHHH Consensus sequence (reverse complement motif): HHHHDVVGTTGCTAHGGDHBAHH Alignment: HDTBHHCCHTAGCAACVVDHHHH ---------TGGCASBDHGCCAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_secondary Reverse Complement Reverse Complement Backward 1 14 0.0753915 Species: Mus musculus Consensus sequence (original motif): BHGCCCDAGGGCWD Consensus sequence (reverse complement motif): HWGCCCTDGGGCDB Alignment: HWGCCCTDGGGCDB TTGGCHDBSTGCCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Original Motif Forward 3 14 0.0779719 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB --TTGGCHDBSTGCCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 125 Motif name: TP53 Consensus sequence (original motif): MSGGACATGYCCGGGCATGT Consensus sequence (reverse complement motif): ACATGCCCGGKCATGTCCSR ************************************************************************ Best Matches for Motif ID 125 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Backward 1 20 0.0503863 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ---ACATGCCCGGKCATGTCCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Reverse Complement Backward 4 20 0.0537648 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM MSGGACATGYCCGGGCATGT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Original Motif Original Motif Backward 3 20 0.0545224 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB MSGGACATGYCCGGGCATGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Original Motif Forward 2 19 0.554849 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB- -ACATGCCCGGKCATGTCCSR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Reverse Complement Reverse Complement Backward 2 19 0.5552 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: -BTBVTCVTGGGTGGTCMVVDVBB ---ACATGCCCGGKCATGTCCSR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 126 Motif name: USF1 Consensus sequence (original motif): CACGTGR Consensus sequence (reverse complement motif): MCACGTG ************************************************************************ Best Matches for Motif ID 126 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Backward 6 7 0 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD ----CACGTGR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Reverse Complement Backward 9 7 0.00626993 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM --------MCACGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Original Motif Reverse Complement Forward 9 7 0.00965663 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM --------CACGTGR------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Original Motif Forward 5 7 0.0311072 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD ----MCACGTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Reverse Complement Original Motif Backward 5 7 0.0449596 Species: Mus musculus Consensus sequence (original motif): BBGHCACGCGACDD Consensus sequence (reverse complement motif): HDGTCGCGTGDCVB Alignment: BBGHCACGCGACDD ---MCACGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 127 Motif name: YY1 Consensus sequence (original motif): RCCATB Consensus sequence (reverse complement motif): BATGGM ************************************************************************ Best Matches for Motif ID 127 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_primary Reverse Complement Original Motif Forward 9 6 0 Species: Mus musculus Consensus sequence (original motif): DVDDATGGGATGKMDDV Consensus sequence (reverse complement motif): BDDYYCATCCCATDDBD Alignment: DVDDATGGGATGKMDDV --------BATGGM--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Reverse Complement Original Motif Forward 8 6 0.00378844 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: HVDDVCAGATGKYHBBV -------BATGGM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00207 Hoxb9 Original Motif Original Motif Forward 4 6 0.0208704 Species: Mus musculus Consensus sequence (original motif): VRRGCMATAAAAHHHD Consensus sequence (reverse complement motif): HDHHTTTTATRGCKMV Alignment: VRRGCMATAAAAHHHD ---RCCATB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00077 Srf_primary Reverse Complement Original Motif Backward 2 6 0.023319 Species: Mus musculus Consensus sequence (original motif): HHCCWTATAWGGHA Consensus sequence (reverse complement motif): THCCWTATAWGGHH Alignment: HHCCWTATAWGGHA -------BATGGM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00213 Hoxa9 Original Motif Original Motif Forward 4 6 0.0242984 Species: Mus musculus Consensus sequence (original motif): DCGGYCATWAAAWTADW Consensus sequence (reverse complement motif): WDTAWTTTWATGKCCGD Alignment: DCGGYCATWAAAWTADW ---RCCATB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 128 Motif name: ZEB1 Consensus sequence (original motif): CACCTD Consensus sequence (reverse complement motif): HAGGTG ************************************************************************ Best Matches for Motif ID 128 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_secondary Original Motif Reverse Complement Backward 4 6 0 Species: Mus musculus Consensus sequence (original motif): VBVDAGGTGTYGVBBV Consensus sequence (reverse complement motif): VVBVCKACACCTHVBV Alignment: VVBVCKACACCTHVBV -------CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00199 Six4 Reverse Complement Reverse Complement Forward 4 6 0.00433068 Species: Mus musculus Consensus sequence (original motif): ADDHATGACACCBHBBV Consensus sequence (reverse complement motif): BBVHVGGTGTCATHDDT Alignment: BBVHVGGTGTCATHDDT ---HAGGTG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_primary Original Motif Reverse Complement Forward 9 6 0.00524081 Species: Mus musculus Consensus sequence (original motif): BVHDAGGTGTGAAAHHH Consensus sequence (reverse complement motif): HHHTTTCACACCTDHBV Alignment: HHHTTTCACACCTDHBV --------CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Reverse Complement Original Motif Backward 7 6 0.00911301 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD -----HAGGTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_secondary Original Motif Original Motif Backward 4 6 0.0233556 Species: Mus musculus Consensus sequence (original motif): BDDRVGACCACCHBDVB Consensus sequence (reverse complement motif): BBDVHGGTGGTCBKDDB Alignment: BDDRVGACCACCHBDVB --------CACCTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 129 Motif name: Zfp423 Consensus sequence (original motif): GSMMCCYARGGKKKC Consensus sequence (reverse complement motif): GYRYCCMTKGGYRSC ************************************************************************ Best Matches for Motif ID 129 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_primary Original Motif Original Motif Backward 1 15 0.0178077 Species: Mus musculus Consensus sequence (original motif): BMCCCCCGGGGGGGB Consensus sequence (reverse complement motif): VCCCCCCCGGGGGRB Alignment: BMCCCCCGGGGGGGB GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_primary Original Motif Original Motif Backward 1 15 0.0213948 Species: Mus musculus Consensus sequence (original motif): BMCCCCCGGGGGGGB Consensus sequence (reverse complement motif): VCCCCCCCGGGGGRB Alignment: BMCCCCCGGGGGGGB GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Reverse Complement Backward 2 15 0.0255241 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH -------GSMMCCYARGGKKKC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_primary Original Motif Original Motif Backward 1 15 0.0261399 Species: Mus musculus Consensus sequence (original motif): WHHSCCYSRGGSDAD Consensus sequence (reverse complement motif): DTHSCCKSMGGSHHW Alignment: WHHSCCYSRGGSDAD GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_primary Original Motif Original Motif Backward 1 15 0.0266201 Species: Mus musculus Consensus sequence (original motif): WDHSCCYSRGGSRAD Consensus sequence (reverse complement motif): DTMSCCKSMGGSHDW Alignment: WDHSCCYSRGGSRAD GSMMCCYARGGKKKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 130 Motif name: Zfx Consensus sequence (original motif): BBVGCCBVGGCCTV Consensus sequence (reverse complement motif): VAGGCCBBGGCVBB ************************************************************************ Best Matches for Motif ID 130 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_secondary Original Motif Original Motif Forward 1 14 0.0596136 Species: Mus musculus Consensus sequence (original motif): HHRCCBBWGGDCDB Consensus sequence (reverse complement motif): BDGHCCWBVGGKDH Alignment: HHRCCBBWGGDCDB BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Original Motif Original Motif Backward 10 14 0.0603516 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: ABBBBVVRGACCACCCACRDBBM BBVGCCBVGGCCTV--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Original Motif Forward 4 14 0.0604694 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB ---VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Backward 3 14 0.0606067 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD BBVGCCBVGGCCTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Original Motif Forward 9 14 0.0606878 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH --------VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 131 Motif name: znf143 Consensus sequence (original motif): BAHYTCCCAKMATGCMWYGC Consensus sequence (reverse complement motif): GCMWRGCATYRTGGGAMHTB ************************************************************************ Best Matches for Motif ID 131 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Original Motif Backward 1 20 0.0673743 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH ---BAHYTCCCAKMATGCMWYGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Original Motif Forward 1 20 0.0687663 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB GCMWRGCATYRTGGGAMHTB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Reverse Complement Original Motif Forward 2 20 0.0697414 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB -GCMWRGCATYRTGGGAMHTB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Reverse Complement Reverse Complement Forward 1 20 0.0698272 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DBCDWHCTGGGTGGTCMDHBBAH GCMWRGCATYRTGGGAMHTB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Original Motif Backward 2 20 0.072957 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW -GCMWRGCATYRTGGGAMHTB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 132 Motif name: ZNF354C Consensus sequence (original motif): MTCCAC Consensus sequence (reverse complement motif): GTGGAY ************************************************************************ Best Matches for Motif ID 132 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Original Motif Original Motif Forward 3 6 0 Species: Mus musculus Consensus sequence (original motif): HDADCCACTTRAAWTT Consensus sequence (reverse complement motif): AAWTTMAAGTGGHTDH Alignment: HDADCCACTTRAAWTT --MTCCAC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Reverse Complement Original Motif Forward 12 6 0.00247916 Species: Mus musculus Consensus sequence (original motif): YDYBDHTMCACGTGGADDBMDGT Consensus sequence (reverse complement motif): ACHRBHDTCCACGTGYAHHBMHM Alignment: YDYBDHTMCACGTGGADDBMDGT -----------GTGGAY------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00147 Nkx2-6 Original Motif Original Motif Forward 3 6 0.00337038 Species: Mus musculus Consensus sequence (original motif): DDADCCACTTAAVHTT Consensus sequence (reverse complement motif): AAHVTTAAGTGGHTDD Alignment: DDADCCACTTAAVHTT --MTCCAC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00228 Bapx1 Original Motif Original Motif Backward 9 6 0.00628534 Species: Mus musculus Consensus sequence (original motif): VHHAACCACTTAAVVAH Consensus sequence (reverse complement motif): DTBVTTAAGTGGTTHHV Alignment: VHHAACCACTTAAVVAH ---MTCCAC-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Original Motif Original Motif Backward 10 6 0.0113442 Species: Mus musculus Consensus sequence (original motif): HDVRCCACTTGARADBD Consensus sequence (reverse complement motif): DVDTKTCAAGTGGKBDH Alignment: HDVRCCACTTGARADBD --MTCCAC--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 133 Motif name: shAGrGGGCAgy Consensus sequence (original motif): SHAGRGGGCABH Consensus sequence (reverse complement motif): DBTGCCCKCTDS ************************************************************************ Best Matches for Motif ID 133 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Original Motif Forward 3 12 0 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH --SHAGRGGGCABH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00009 Nr2f2_primary Original Motif Original Motif Forward 3 12 0.0084293 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCAHVHB Consensus sequence (reverse complement motif): BHVDTGACCTTTDVDD Alignment: DHBHAAAGGTCAHVHB --SHAGRGGGCABH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Original Motif Original Motif Backward 3 12 0.00844318 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCACVHD Consensus sequence (reverse complement motif): HHVGTGACCTTTDVDD Alignment: DHBHAAAGGTCACVHD --SHAGRGGGCABH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Reverse Complement Backward 4 12 0.00952396 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB --SHAGRGGGCABH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_primary Original Motif Original Motif Backward 4 12 0.011648 Species: Mus musculus Consensus sequence (original motif): BDBVMGGGGTCAABHDV Consensus sequence (reverse complement motif): BHHVTTGACCCCYVVDB Alignment: BDBVMGGGGTCAABHDV --SHAGRGGGCABH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 134 Motif name: ssCGwGCGss Consensus sequence (original motif): BSCGWGCGBV Consensus sequence (reverse complement motif): VBCGCWCGSB ************************************************************************ Best Matches for Motif ID 134 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Original Motif Original Motif Forward 4 10 0 Species: Mus musculus Consensus sequence (original motif): DDGCGCGCGCRCHYRD Consensus sequence (reverse complement motif): DMMDGMGCGCGCGCHD Alignment: DDGCGCGCGCRCHYRD ---BSCGWGCGBV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Original Motif Original Motif Forward 8 10 0.00413791 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB -------BSCGWGCGBV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Reverse Complement Forward 7 10 0.013065 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ------BSCGWGCGBV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Original Motif Reverse Complement Backward 7 10 0.0147607 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW ------BSCGWGCGBV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_primary Original Motif Original Motif Backward 3 10 0.0160468 Species: Mus musculus Consensus sequence (original motif): VHDARGGCGCGCVHH Consensus sequence (reverse complement motif): HHVGCGCGCCKTDHB Alignment: VHDARGGCGCGCVHH ---BSCGWGCGBV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 135 Motif name: ssCGGCCGss Consensus sequence (original motif): BSCGGCCGSV Consensus sequence (reverse complement motif): VSCGGCCGSB ************************************************************************ Best Matches for Motif ID 135 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Reverse Complement Reverse Complement Backward 4 10 0.013915 Species: Mus musculus Consensus sequence (original motif): BBYVVCAGCTGCBVHHD Consensus sequence (reverse complement motif): HHDVVGCAGCTGVBKVB Alignment: HHDVVGCAGCTGVBKVB ----VSCGGCCGSB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Reverse Complement Forward 4 10 0.0179182 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: BHBHDTGGCGGGGBDHD ---BSCGGCCGSV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00036 Myf6_secondary Original Motif Original Motif Backward 3 10 0.0197811 Species: Mus musculus Consensus sequence (original motif): VVVRACAGVCBCDCC Consensus sequence (reverse complement motif): GGDGBGVCTGTKVVB Alignment: VVVRACAGVCBCDCC ---BSCGGCCGSV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Original Motif Original Motif Forward 4 10 0.0198393 Species: Mus musculus Consensus sequence (original motif): BHHBHCCGCCCCDHHHH Consensus sequence (reverse complement motif): HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH ---BSCGGCCGSV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00094 Zfp128_primary Original Motif Reverse Complement Forward 3 10 0.0205643 Species: Mus musculus Consensus sequence (original motif): BHHDKGGCGTACCCBHD Consensus sequence (reverse complement motif): DHVGGGTACGCCRDHDV Alignment: DHVGGGTACGCCRDHDV --BSCGGCCGSV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 136 Motif name: dwCAGAAGwh Consensus sequence (original motif): DHCAGAAGDH Consensus sequence (reverse complement motif): HDCTTCTGHD ************************************************************************ Best Matches for Motif ID 136 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Original Motif Backward 5 10 0 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: HVDDVCAGATGKYHBBV ---DHCAGAAGDH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00404 Elf2 Original Motif Reverse Complement Backward 4 10 0.00342014 Species: Mus musculus Consensus sequence (original motif): DBBHACTTCCGGDWDB Consensus sequence (reverse complement motif): BDWDCCGGAAGTHBBD Alignment: BDWDCCGGAAGTHBBD ---DHCAGAAGDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00052 Osr2_primary Reverse Complement Reverse Complement Backward 4 10 0.00452111 Species: Mus musculus Consensus sequence (original motif): HHVHACRGTAGCHHHD Consensus sequence (reverse complement motif): HHHHGCTACKGTHVHH Alignment: HHHHGCTACKGTHVHH ---HDCTTCTGHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00027 Osr1_primary Reverse Complement Reverse Complement Forward 4 10 0.00483126 Species: Mus musculus Consensus sequence (original motif): HHDHACRGTAGCHVHD Consensus sequence (reverse complement motif): DHBHGCTACKGTHDHH Alignment: DHBHGCTACKGTHDHH ---HDCTTCTGHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00015 Ehf_primary Reverse Complement Reverse Complement Backward 5 10 0.00574168 Species: Mus musculus Consensus sequence (original motif): VBDABCCGGAAGTDD Consensus sequence (reverse complement motif): DDACTTCCGGBTHBB Alignment: DDACTTCCGGBTHBB -HDCTTCTGHD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 137 Motif name: rgCGCCmyCTgs Consensus sequence (original motif): VGCGCCCYCTDS Consensus sequence (reverse complement motif): SHAGKGGGCGCB ************************************************************************ Best Matches for Motif ID 137 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Reverse Complement Backward 4 12 0 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB --SHAGKGGGCGCB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_secondary Original Motif Reverse Complement Forward 3 12 0.0223356 Species: Mus musculus Consensus sequence (original motif): VBVDAGGTGTYGVBBV Consensus sequence (reverse complement motif): VVBVCKACACCTHVBV Alignment: VVBVCKACACCTHVBV --VGCGCCCYCTDS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Original Motif Reverse Complement Forward 3 12 0.0255543 Species: Mus musculus Consensus sequence (original motif): VHDADGGCGCGCSHW Consensus sequence (reverse complement motif): WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB --VGCGCCCYCTDS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Reverse Complement Original Motif Backward 4 12 0.027032 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH --SHAGKGGGCGCB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_primary Reverse Complement Original Motif Backward 3 12 0.0274822 Species: Mus musculus Consensus sequence (original motif): VHDARGGCGCGCVHH Consensus sequence (reverse complement motif): HHVGCGCGCCKTDHB Alignment: VHDARGGCGCGCVHH -SHAGKGGGCGCB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 138 Motif name: grCCACyAGAkG Consensus sequence (original motif): DDCCACYAGAKG Consensus sequence (reverse complement motif): CYTCTMGTGGHH ************************************************************************ Best Matches for Motif ID 138 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Reverse Complement Reverse Complement Backward 3 12 0 Species: Mus musculus Consensus sequence (original motif): BVABCCACTTGAMHTT Consensus sequence (reverse complement motif): AAHYTCAAGTGGBTBV Alignment: AAHYTCAAGTGGBTBV --CYTCTMGTGGHH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Original Motif Original Motif Forward 3 12 0.00409843 Species: Mus musculus Consensus sequence (original motif): HDVRCCACTTGARADBD Consensus sequence (reverse complement motif): DVDTKTCAAGTGGKBDH Alignment: HDVRCCACTTGARADBD --DDCCACYAGAKG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00107 Nkx2-4 Reverse Complement Reverse Complement Forward 3 12 0.00589166 Species: Mus musculus Consensus sequence (original motif): HDAVCCACTTRAMWTT Consensus sequence (reverse complement motif): AAWYTMAAGTGGVTDH Alignment: AAWYTMAAGTGGVTDH --CYTCTMGTGGHH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Reverse Complement Reverse Complement Backward 3 12 0.00660985 Species: Mus musculus Consensus sequence (original motif): HDADCCACTTRAAWTT Consensus sequence (reverse complement motif): AAWTTMAAGTGGHTDH Alignment: AAWTTMAAGTGGHTDH --CYTCTMGTGGHH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Forward 6 12 0.00783877 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM -----CYTCTMGTGGHH----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 139 Motif name: mkCTyTTCsg Consensus sequence (original motif): HBCTTTTCBD Consensus sequence (reverse complement motif): HBGAAAAGBD ************************************************************************ Best Matches for Motif ID 139 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00100 Gata6_primary Reverse Complement Original Motif Backward 4 10 0 Species: Mus musculus Consensus sequence (original motif): DHDVDWGATAAGADDHV Consensus sequence (reverse complement motif): VHDDTCTTATCWHBDHD Alignment: DHDVDWGATAAGADDHV ----HBGAAAAGBD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00080 Gata5_primary Original Motif Reverse Complement Backward 5 10 0.000223307 Species: Mus musculus Consensus sequence (original motif): HDDDCTGATAAGRVDDD Consensus sequence (reverse complement motif): DDHBKCTTATCAGDDDH Alignment: DDHBKCTTATCAGDDDH ---HBCTTTTCBD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Original Motif Backward 7 10 0.00555961 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: BDHDDADAGATAAGADHBDHVD ------HBGAAAAGBD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00018 Irf4_primary Original Motif Reverse Complement Forward 2 10 0.0104391 Species: Mus musculus Consensus sequence (original motif): VDDAYCGAAACYDVA Consensus sequence (reverse complement motif): TBDKGTTTCGMTDHV Alignment: TBDKGTTTCGMTDHV -HBCTTTTCBD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00422 Etv3 Original Motif Original Motif Forward 2 10 0.012889 Species: Mus musculus Consensus sequence (original motif): VBBHAYTTCCGGTHDH Consensus sequence (reverse complement motif): DHHACCGGAAKTHBBB Alignment: VBBHAYTTCCGGTHDH -HBCTTTTCBD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 140 Motif name: vkCKCTkCGk Consensus sequence (original motif): VDCTCTKCGB Consensus sequence (reverse complement motif): BCGYAGAGDV ************************************************************************ Best Matches for Motif ID 140 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Original Motif Original Motif Backward 5 10 0 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: DDBBBCACTGCABTBBB ---VDCTCTKCGB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_secondary Original Motif Reverse Complement Backward 4 10 0.00813165 Species: Mus musculus Consensus sequence (original motif): GYCGCGCARBGCVB Consensus sequence (reverse complement motif): VVGCVMTGCGCGKC Alignment: VVGCVMTGCGCGKC -VDCTCTKCGB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Original Motif Original Motif Forward 2 10 0.0158498 Species: Mus musculus Consensus sequence (original motif): HHDCVCAGCAKGVVD Consensus sequence (reverse complement motif): DVBCYTGCTGBGDDD Alignment: HHDCVCAGCAKGVVD -VDCTCTKCGB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00102 Zic1_secondary Original Motif Original Motif Forward 2 10 0.0176179 Species: Mus musculus Consensus sequence (original motif): BHDCVCAGCAGGHVD Consensus sequence (reverse complement motif): DVHCCTGCTGBGDDB Alignment: BHDCVCAGCAGGHVD -VDCTCTKCGB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00006 Zic3_secondary Original Motif Original Motif Forward 2 10 0.0202331 Species: Mus musculus Consensus sequence (original motif): DDDCACAGCAKGHVD Consensus sequence (reverse complement motif): DVHCYTGCTGTGHDH Alignment: DDDCACAGCAKGHVD -VDCTCTKCGB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 141 Motif name: raCAAAACam Consensus sequence (original motif): DACAAAACAH Consensus sequence (reverse complement motif): HTGTTTTGTD ************************************************************************ Best Matches for Motif ID 141 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_secondary Reverse Complement Reverse Complement Backward 4 10 0 Species: Mus musculus Consensus sequence (original motif): HDBAHCAWAACADWDVD Consensus sequence (reverse complement motif): DVHWDTGTTWTGDTBDH Alignment: DVHWDTGTTWTGDTBDH ----HTGTTTTGTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00040 Irf5_primary Reverse Complement Reverse Complement Backward 5 10 0.00529846 Species: Mus musculus Consensus sequence (original motif): DDDWAYCGAAACYDV Consensus sequence (reverse complement motif): BDKGTTTCGKTWDDD Alignment: BDKGTTTCGKTWDDD -HTGTTTTGTD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00018 Irf4_primary Reverse Complement Reverse Complement Backward 4 10 0.010321 Species: Mus musculus Consensus sequence (original motif): VDDAYCGAAACYDVA Consensus sequence (reverse complement motif): TBDKGTTTCGMTDHV Alignment: TBDKGTTTCGMTDHV --HTGTTTTGTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00061 Foxl1_secondary Reverse Complement Reverse Complement Forward 5 10 0.0116411 Species: Mus musculus Consensus sequence (original motif): ADDDYAWAACAAMAHH Consensus sequence (reverse complement motif): HDTYTTGTTWTKDDDT Alignment: HDTYTTGTTWTKDDDT ----HTGTTTTGTD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00011 Irf6_primary Reverse Complement Reverse Complement Forward 5 10 0.0133918 Species: Mus musculus Consensus sequence (original motif): HDDAHCGAAACYAVDDD Consensus sequence (reverse complement motif): DHDBTKGTTTCGHTHDD Alignment: DHDBTKGTTTCGHTHDD ----HTGTTTTGTD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 142 Motif name: ctCTTAACyw Consensus sequence (original motif): HHCTTAACHD Consensus sequence (reverse complement motif): DDGTTAAGHD ************************************************************************ Best Matches for Motif ID 142 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00100 Gata6_primary Reverse Complement Original Motif Backward 4 10 0 Species: Mus musculus Consensus sequence (original motif): DHDVDWGATAAGADDHV Consensus sequence (reverse complement motif): VHDDTCTTATCWHBDHD Alignment: DHDVDWGATAAGADDHV ----DDGTTAAGHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00390 Tcf1 Original Motif Original Motif Forward 4 10 0.00372807 Species: Mus musculus Consensus sequence (original motif): HSKBVGTTAACTAADDB Consensus sequence (reverse complement motif): VDDTTAGTTAACBVRSD Alignment: HSKBVGTTAACTAADDB ---HHCTTAACHD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00222 Tcf2 Original Motif Original Motif Backward 6 10 0.00564182 Species: Mus musculus Consensus sequence (original motif): DBBBGTTAACTAGBHBT Consensus sequence (reverse complement motif): ABDBCTAGTTAACVBBD Alignment: DBBBGTTAACTAGBHBT --HHCTTAACHD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00032 Gata3_primary Reverse Complement Original Motif Backward 7 10 0.00635188 Species: Mus musculus Consensus sequence (original motif): BDHDDADAGATAAGADHBDHVD Consensus sequence (reverse complement motif): HBHDVHDTCTTATCTHTDDHDV Alignment: BDHDDADAGATAAGADHBDHVD ------DDGTTAAGHD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00012 Bbx_secondary Reverse Complement Original Motif Backward 5 10 0.00788123 Species: Mus musculus Consensus sequence (original motif): HVWHBGTTAACABHBDV Consensus sequence (reverse complement motif): VHVHBTGTTAACVHWVH Alignment: HVWHBGTTAACABHBDV ---DDGTTAAGHD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 143 Motif name: AgmAGAGGGCrscAGak Consensus sequence (original motif): AGMAGAGGGCASCAGAK Consensus sequence (reverse complement motif): RTCTGSTGCCCTCTYCT ************************************************************************ Best Matches for Motif ID 143 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Original Motif Forward 2 17 0.0294896 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV -RTCTGSTGCCCTCTYCT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Original Motif Original Motif Backward 3 17 0.0339644 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH ---AGMAGAGGGCASCAGAK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Original Motif Backward 1 17 0.0353444 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB ------AGMAGAGGGCASCAGAK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Original Motif Reverse Complement Backward 3 17 0.0356077 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: TCDAMVBGACGCMAKDDDVBBD ---AGMAGAGGGCASCAGAK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00088 Plagl1_secondary Original Motif Original Motif Forward 1 17 0.0356806 Species: Mus musculus Consensus sequence (original motif): DBHGGGGGGTACCHHHD Consensus sequence (reverse complement motif): DHDDGGTACCCCCCHBH Alignment: DBHGGGGGGTACCHHHD AGMAGAGGGCASCAGAK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 144 Motif name: ctCTrsyGCCmCCTast Consensus sequence (original motif): HDCTGSYGCCMCCTAST Consensus sequence (reverse complement motif): ASTAGGYGGCMSCAGDD ************************************************************************ Best Matches for Motif ID 144 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Reverse Complement Reverse Complement Forward 6 17 0.0268744 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BTBVTCVTGGGTGGTCMVVDVBB -----ASTAGGYGGCMSCAGDD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Reverse Complement Backward 7 17 0.0280132 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH HDCTGSYGCCMCCTAST------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Reverse Complement Reverse Complement Forward 6 17 0.0281897 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: DVVTTVGTGGGHGGYAMHWHHHY -----ASTAGGYGGCMSCAGDD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Reverse Complement Reverse Complement Backward 3 17 0.0307583 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT ----ASTAGGYGGCMSCAGDD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_primary Reverse Complement Reverse Complement Forward 6 17 0.033913 Species: Mus musculus Consensus sequence (original motif): DTVBDDRGACCACCCAGDWDGBH Consensus sequence (reverse complement motif): DBCDWHCTGGGTGGTCMDHBBAH Alignment: DBCDWHCTGGGTGGTCMDHBBAH -----ASTAGGYGGCMSCAGDD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 145 Motif name: grCCACyAGAkG Consensus sequence (original motif): DDCCACYAGAKG Consensus sequence (reverse complement motif): CYTCTKGTGGHH ************************************************************************ Best Matches for Motif ID 145 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Original Motif Original Motif Forward 3 12 0 Species: Mus musculus Consensus sequence (original motif): HDVRCCACTTGARADBD Consensus sequence (reverse complement motif): DVDTKTCAAGTGGKBDH Alignment: HDVRCCACTTGARADBD --DDCCACYAGAKG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Reverse Complement Reverse Complement Backward 3 12 0.00595864 Species: Mus musculus Consensus sequence (original motif): BVABCCACTTGAMHTT Consensus sequence (reverse complement motif): AAHYTCAAGTGGBTBV Alignment: AAHYTCAAGTGGBTBV --CYTCTKGTGGHH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Original Motif Original Motif Forward 3 12 0.00794079 Species: Mus musculus Consensus sequence (original motif): HDADCCACTTRAAWTT Consensus sequence (reverse complement motif): AAWTTMAAGTGGHTDH Alignment: HDADCCACTTRAAWTT --DDCCACYAGAKG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Original Motif Reverse Complement Forward 8 12 0.0107822 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB -------DDCCACYAGAKG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Backward 6 12 0.0113877 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM -----CYTCTKGTGGHH----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 146 Motif name: myrGYGCCmCCTast Consensus sequence (original motif): VBAGCGCCMCCTAST Consensus sequence (reverse complement motif): ASTAGGYGGCGCTBB ************************************************************************ Best Matches for Motif ID 146 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Original Motif Forward 2 15 0.015769 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB -VBAGCGCCMCCTAST- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_secondary Reverse Complement Original Motif Forward 2 15 0.0179196 Species: Mus musculus Consensus sequence (original motif): VBVDAGGTGTYGVBBV Consensus sequence (reverse complement motif): VVBVCKACACCTHVBV Alignment: VBVDAGGTGTYGVBBV -ASTAGGYGGCGCTBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Reverse Complement Backward 7 15 0.020063 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH --VBAGCGCCMCCTAST------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_primary Original Motif Original Motif Forward 5 15 0.0236839 Species: Mus musculus Consensus sequence (original motif): HTBVVVDGGACCACCCRGRDBG Consensus sequence (reverse complement motif): CBDMCMGGGTGGTCCHVBVBAH Alignment: HTBVVVDGGACCACCCRGRDBG ----VBAGCGCCMCCTAST--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Original Motif Reverse Complement Backward 1 15 0.0240418 Species: Mus musculus Consensus sequence (original motif): VHDADGGCGCGCSHW Consensus sequence (reverse complement motif): WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB VBAGCGCCMCCTAST ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 147 Motif name: asCAGrkGGCrsy Consensus sequence (original motif): ASCAGRGGGCRSB Consensus sequence (reverse complement motif): BSKGCCCMCTGST ************************************************************************ Best Matches for Motif ID 147 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Reverse Complement Backward 4 13 4.36149e-05 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB -ASCAGRGGGCRSB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Original Motif Forward 4 13 0.00629602 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: HVDDVCAGATGKYHBBV ---ASCAGRGGGCRSB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Reverse Complement Reverse Complement Forward 4 13 0.0114104 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: DBBHHTGACCCCTBBYV ---BSKGCCCMCTGST- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Reverse Complement Forward 2 13 0.0149411 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: VHTGCGGGGGCGGH -ASCAGRGGGCRSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Original Motif Original Motif Backward 2 13 0.0154138 Species: Mus musculus Consensus sequence (original motif): BBYVVCAGCTGCBVHHD Consensus sequence (reverse complement motif): HHDVVGCAGCTGVBKVB Alignment: BBYVVCAGCTGCBVHHD ---ASCAGRGGGCRSB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 148 Motif name: wwTwAAAAww Consensus sequence (original motif): DDTWAAAAHH Consensus sequence (reverse complement motif): HHTTTTWADD ************************************************************************ Best Matches for Motif ID 148 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Reverse Complement Forward 3 10 0.0170004 Species: Mus musculus Consensus sequence (original motif): HDHYYAATAAAAHHHH Consensus sequence (reverse complement motif): HDHHTTTTATTKKHDD Alignment: HDHHTTTTATTKKHDD --HHTTTTWADD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Reverse Complement Reverse Complement Forward 2 10 0.0201634 Species: Mus musculus Consensus sequence (original motif): VRHCCAATAAAAWHHV Consensus sequence (reverse complement motif): VDHWTTTTATTGGDKB Alignment: VDHWTTTTATTGGDKB -HHTTTTWADD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Reverse Complement Backward 5 10 0.0216837 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB ---HHTTTTWADD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00213 Hoxa9 Reverse Complement Reverse Complement Forward 3 10 0.0217118 Species: Mus musculus Consensus sequence (original motif): DCGGYCATWAAAWTADW Consensus sequence (reverse complement motif): WDTAWTTTWATGKCCGD Alignment: WDTAWTTTWATGKCCGD --HHTTTTWADD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00078 Arid3a_primary Original Motif Original Motif Forward 7 10 0.0227023 Species: Mus musculus Consensus sequence (original motif): VBBHTTAATTAAAMHHH Consensus sequence (reverse complement motif): DHHYTTTAATTAAHBBV Alignment: VBBHTTAATTAAAMHHH ------DDTWAAAAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 149 Motif name: asmAGRGGGCrCTGsmkc Consensus sequence (original motif): ASMAGAGGGCRCTGSABH Consensus sequence (reverse complement motif): DBTSCAGMGCCCTCTRST ************************************************************************ Best Matches for Motif ID 149 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Original Motif Original Motif Backward 2 18 0.0559948 Species: Mus musculus Consensus sequence (original motif): MWSMBAARRATGCDCABHATGD Consensus sequence (reverse complement motif): DCATDBTGHGCATKMTTBRSWR Alignment: MWSMBAARRATGCDCABHATGD ---ASMAGAGGGCRCTGSABH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Original Motif Original Motif Backward 1 18 0.0570957 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB ----ASMAGAGGGCRCTGSABH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Original Motif Original Motif Backward 2 18 0.0582215 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH ---ASMAGAGGGCRCTGSABH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_primary Original Motif Reverse Complement Backward 5 18 0.0613486 Species: Mus musculus Consensus sequence (original motif): ABBBBVVRGACCACCCACRDBBM Consensus sequence (reverse complement motif): YBVDMGTGGGTGGTCKVVBVBBT Alignment: YBVDMGTGGGTGGTCKVVBVBBT -ASMAGAGGGCRCTGSABH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Reverse Complement Original Motif Forward 4 18 0.0613771 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: MHHHWHYTMCCHCCCACVAABVH ---DBTSCAGMGCCCTCTRST-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 150 Motif name: waATwAAAATAww Consensus sequence (original motif): DHATWAAAATAHD Consensus sequence (reverse complement motif): DHTATTTTWATHD ************************************************************************ Best Matches for Motif ID 150 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00071 Sox21_primary Original Motif Original Motif Backward 2 13 0.00363797 Species: Mus musculus Consensus sequence (original motif): HHHHATTATAATWDDD Consensus sequence (reverse complement motif): HDDWATTATAATHHHH Alignment: HHHHATTATAATWDDD --DHATWAAAATAHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00016 Sry_primary Reverse Complement Reverse Complement Backward 3 13 0.0060438 Species: Mus musculus Consensus sequence (original motif): BHDHATTATAATDDDV Consensus sequence (reverse complement motif): VDDDATTATAATHDHV Alignment: VDDDATTATAATHDHV -DHTATTTTWATHD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00004 Sox14_primary Reverse Complement Reverse Complement Backward 3 13 0.008022 Species: Mus musculus Consensus sequence (original motif): DHHAATTATAATWDDH Consensus sequence (reverse complement motif): DDDWATTATAATTHDH Alignment: DDDWATTATAATTHDH -DHTATTTTWATHD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00213 Hoxa9 Original Motif Original Motif Backward 1 13 0.00895732 Species: Mus musculus Consensus sequence (original motif): DCGGYCATWAAAWTADW Consensus sequence (reverse complement motif): WDTAWTTTWATGKCCGD Alignment: DCGGYCATWAAAWTADW ----DHATWAAAATAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Reverse Complement Forward 1 13 0.0122884 Species: Mus musculus Consensus sequence (original motif): VDKVYAATAAAATDDDH Consensus sequence (reverse complement motif): HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB DHTATTTTWATHD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 151 Motif name: agrCCAGmAGrg Consensus sequence (original motif): HVGCCAGMAGRG Consensus sequence (reverse complement motif): CKCTRCTGGCVH ************************************************************************ Best Matches for Motif ID 151 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00052 Osr2_primary Reverse Complement Reverse Complement Backward 2 12 0.00527025 Species: Mus musculus Consensus sequence (original motif): HHVHACRGTAGCHHHD Consensus sequence (reverse complement motif): HHHHGCTACKGTHVHH Alignment: HHHHGCTACKGTHVHH ---CKCTRCTGGCVH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00013 Gabpa_primary Original Motif Original Motif Backward 4 12 0.00879859 Species: Mus musculus Consensus sequence (original motif): HVHHACCGGAAGTDHHV Consensus sequence (reverse complement motif): BHHHACTTCCGGTHHBD Alignment: HVHHACCGGAAGTDHHV --HVGCCAGMAGRG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00027 Osr1_primary Reverse Complement Reverse Complement Backward 2 12 0.0106437 Species: Mus musculus Consensus sequence (original motif): HHDHACRGTAGCHVHD Consensus sequence (reverse complement motif): DHBHGCTACKGTHDHH Alignment: DHBHGCTACKGTHDHH ---CKCTRCTGGCVH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00045 Mafb_primary Original Motif Reverse Complement Backward 3 12 0.0125184 Species: Mus musculus Consensus sequence (original motif): HAAWDTGCTGACDWARH Consensus sequence (reverse complement motif): DMTWDGTCAGCADWTTH Alignment: DMTWDGTCAGCADWTTH ---HVGCCAGMAGRG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Reverse Complement Reverse Complement Backward 2 12 0.0127651 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: VBBDMYCATCTGVHHBH ----CKCTRCTGGCVH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 152 Motif name: yrCATGCAyr Consensus sequence (original motif): BRCATGCABD Consensus sequence (reverse complement motif): HVTGCATGKV ************************************************************************ Best Matches for Motif ID 152 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00236 Irx2 Original Motif Reverse Complement Forward 6 10 0 Species: Mus musculus Consensus sequence (original motif): WDDDTACATGTADDWBW Consensus sequence (reverse complement motif): WVWDDTACATGTADDDW Alignment: WVWDDTACATGTADDDW -----BRCATGCABD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_2226.1 Original Motif Reverse Complement Forward 6 10 0.000793267 Species: Mus musculus Consensus sequence (original motif): DDDHTACATGTAVWDHD Consensus sequence (reverse complement motif): DHDWBTACATGTAHDDD Alignment: DHDWBTACATGTAHDDD -----BRCATGCABD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_0920.1 Original Motif Reverse Complement Backward 3 10 0.00151885 Species: Mus musculus Consensus sequence (original motif): DDDDTACATGTAVWWHD Consensus sequence (reverse complement motif): DDWWBTACATGTADDDD Alignment: DDWWBTACATGTADDDD -----BRCATGCABD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00150 Irx6 Reverse Complement Original Motif Forward 3 10 0.00440523 Species: Mus musculus Consensus sequence (original motif): HAHDTACATGTAVDWHT Consensus sequence (reverse complement motif): AHWDBTACATGTADHTH Alignment: HAHDTACATGTAVDWHT --HVTGCATGKV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00250 Irx5 Original Motif Reverse Complement Backward 3 10 0.00456694 Species: Mus musculus Consensus sequence (original motif): DDDHWACATGTWHDABW Consensus sequence (reverse complement motif): WVTDHWACATGTWHDDD Alignment: WVTDHWACATGTWHDDD -----BRCATGCABD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 153 Motif name: scAGrkGGCGcy Consensus sequence (original motif): SHAGRGGGCGCB Consensus sequence (reverse complement motif): VGCGCCCMCTDS ************************************************************************ Best Matches for Motif ID 153 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Original Motif Forward 4 12 0 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB ---VGCGCCCMCTDS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Reverse Complement Original Motif Forward 1 12 0.0220034 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB VGCGCCCMCTDS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00068 Eomes_secondary Original Motif Original Motif Forward 3 12 0.0243258 Species: Mus musculus Consensus sequence (original motif): VBVDAGGTGTYGVBBV Consensus sequence (reverse complement motif): VVBVCKACACCTHVBV Alignment: VBVDAGGTGTYGVBBV --SHAGRGGGCGCB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Reverse Complement Reverse Complement Backward 3 12 0.0256904 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: DBBHHTGACCCCTBBYV ---VGCGCCCMCTDS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Reverse Complement Reverse Complement Backward 2 12 0.0276084 Species: Mus musculus Consensus sequence (original motif): VHDADGGCGCGCSHW Consensus sequence (reverse complement motif): WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB --VGCGCCCMCTDS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 154 Motif name: csCsCCTCCcc Consensus sequence (original motif): VBCCCCTCCHB Consensus sequence (reverse complement motif): BDGGAGGGGBV ************************************************************************ Best Matches for Motif ID 154 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Reverse Complement Reverse Complement Forward 5 11 0 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: BHBHDTGGCGGGGBDHD ----BDGGAGGGGBV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Original Motif Forward 3 11 0.000861882 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB --VBCCCCTCCHB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Reverse Complement Reverse Complement Backward 3 11 0.00225908 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: DHHDGGGCGRGGKHBH ---BDGGAGGGGBV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Original Motif Forward 4 11 0.00928712 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB ---VBCCCCTCCHB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_primary Reverse Complement Reverse Complement Forward 5 11 0.0113601 Species: Mus musculus Consensus sequence (original motif): DDVCCCCCCHAAWHB Consensus sequence (reverse complement motif): VHWTTHGGGGGGVDD Alignment: VHWTTHGGGGGGVDD ----BDGGAGGGGBV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 155 Motif name: csCSCCdCCCcs Consensus sequence (original motif): VBCCCCDCCCHV Consensus sequence (reverse complement motif): VDGGGDGGGGBV ************************************************************************ Best Matches for Motif ID 155 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Original Motif Original Motif Backward 3 12 0 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD --VBCCCCDCCCHV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_primary Reverse Complement Reverse Complement Backward 3 12 0.00350351 Species: Mus musculus Consensus sequence (original motif): DBCCCCCCCCCCMYC Consensus sequence (reverse complement motif): GKRGGGGGGGGGGBD Alignment: GKRGGGGGGGGGGBD -VDGGGDGGGGBV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Reverse Complement Reverse Complement Backward 2 12 0.00591405 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: BHHDYGGGGGGGGBVD ---VDGGGDGGGGBV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Original Motif Forward 3 12 0.0128691 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB --VBCCCCDCCCHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Original Motif Original Motif Backward 5 12 0.0153192 Species: Mus musculus Consensus sequence (original motif): HBBBCCGCCCCWHHHV Consensus sequence (reverse complement motif): BHHHWGGGGCGGBBVH Alignment: HBBBCCGCCCCWHHHV VBCCCCDCCCHV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 156 Motif name: rgyGCCMyCTksTGGccd Consensus sequence (original motif): RVYGCCCYCTKSTGGCHD Consensus sequence (reverse complement motif): DDGCCASYAGMGGGCKVM ************************************************************************ Best Matches for Motif ID 156 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Original Motif Backward 1 18 0.0420151 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV -----RVYGCCCYCTKSTGGCHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Original Motif Reverse Complement Backward 1 18 0.0449867 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH ----RVYGCCCYCTKSTGGCHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Original Motif Original Motif Backward 1 18 0.0484904 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH ----RVYGCCCYCTKSTGGCHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Original Motif Forward 1 18 0.0486343 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB RVYGCCCYCTKSTGGCHD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Forward 5 18 0.0531558 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM ----DDGCCASYAGMGGGCKVM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 157 Motif name: wtATTTTTAww Consensus sequence (original motif): DTATTTTTAWW Consensus sequence (reverse complement motif): WWTAAAAATAD ************************************************************************ Best Matches for Motif ID 157 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00051 Sox8_primary Reverse Complement Reverse Complement Backward 5 11 0 Species: Mus musculus Consensus sequence (original motif): DDATBWATTGTTHHDDD Consensus sequence (reverse complement motif): DDDHDAACAATWBATDD Alignment: DDDHDAACAATWBATDD --WWTAAAAATAD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Reverse Complement Backward 5 11 1.71331e-05 Species: Mus musculus Consensus sequence (original motif): HHBDHDDAACAATDRHHHHHBW Consensus sequence (reverse complement motif): WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH -------DTATTTTTAWW---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00096 Sox13_primary Reverse Complement Original Motif Forward 3 11 0.00013394 Species: Mus musculus Consensus sequence (original motif): DHDRGAACAATWWDHW Consensus sequence (reverse complement motif): WHDWWATTGTTCKDHD Alignment: DHDRGAACAATWWDHW --WWTAAAAATAD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00091 Sox5_primary Original Motif Reverse Complement Backward 3 11 0.00179252 Species: Mus musculus Consensus sequence (original motif): DHDDGAACAATWDDHD Consensus sequence (reverse complement motif): DHDDWATTGTTCDDHD Alignment: DHDDWATTGTTCDDHD ---DTATTTTTAWW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00213 Hoxa9 Original Motif Reverse Complement Backward 6 11 0.00180638 Species: Mus musculus Consensus sequence (original motif): DCGGYCATWAAAWTADW Consensus sequence (reverse complement motif): WDTAWTTTWATGKCCGD Alignment: WDTAWTTTWATGKCCGD -DTATTTTTAWW----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 158 Motif name: grCCACwAGrk Consensus sequence (original motif): DDCCACWAGRK Consensus sequence (reverse complement motif): YMCTWGTGGHH ************************************************************************ Best Matches for Motif ID 158 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00231 Nkx2-2 Original Motif Original Motif Forward 3 11 0 Species: Mus musculus Consensus sequence (original motif): HDVRCCACTTGARADBD Consensus sequence (reverse complement motif): DVDTKTCAAGTGGKBDH Alignment: HDVRCCACTTGARADBD --DDCCACWAGRK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_primary Original Motif Original Motif Forward 2 11 0.00190925 Species: Mus musculus Consensus sequence (original motif): DDASCACGTGBTBVDD Consensus sequence (reverse complement motif): HHVBABCACGTGSTHD Alignment: DDASCACGTGBTBVDD -DDCCACWAGRK---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_secondary Original Motif Reverse Complement Forward 4 11 0.00460463 Species: Mus musculus Consensus sequence (original motif): DDBVHATAGGGGRBRMB Consensus sequence (reverse complement motif): BYMBKCCCCTATDVBHD Alignment: BYMBKCCCCTATDVBHD ---DDCCACWAGRK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00165 Titf1 Reverse Complement Reverse Complement Forward 4 11 0.00482349 Species: Mus musculus Consensus sequence (original motif): BVABCCACTTGAMHTT Consensus sequence (reverse complement motif): AAHYTCAAGTGGBTBV Alignment: AAHYTCAAGTGGBTBV ---YMCTWGTGGHH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00249 Nkx2-5 Original Motif Original Motif Backward 4 11 0.00533429 Species: Mus musculus Consensus sequence (original motif): HDADCCACTTRAAWTT Consensus sequence (reverse complement motif): AAWTTMAAGTGGHTDH Alignment: HDADCCACTTRAAWTT --DDCCACWAGRK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 159 Motif name: kkAAGAGCAsy Consensus sequence (original motif): DBAAGAGCAVH Consensus sequence (reverse complement motif): HVTGCTCTTBH ************************************************************************ Best Matches for Motif ID 159 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00095 Zfp691_primary Original Motif Reverse Complement Backward 6 11 0 Species: Mus musculus Consensus sequence (original motif): BDHVCAGTGCTCMBHDD Consensus sequence (reverse complement motif): DDHBYGAGCACTGBHHB Alignment: DDHBYGAGCACTGBHHB -DBAAGAGCAVH----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00048 Rara Reverse Complement Reverse Complement Forward 3 11 0.00374756 Species: Mus musculus Consensus sequence (original motif): DHBHAAAGGTCACVHD Consensus sequence (reverse complement motif): HHVGTGACCTTTDVDD Alignment: HHVGTGACCTTTDVDD --HVTGCTCTTBH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_secondary Original Motif Reverse Complement Forward 3 11 0.00417461 Species: Mus musculus Consensus sequence (original motif): DBDDRTGCCCAWDHDV Consensus sequence (reverse complement motif): VHHDWTGGGCAMDHBH Alignment: VHHDWTGGGCAMDHBH --DBAAGAGCAVH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_secondary Reverse Complement Reverse Complement Backward 4 11 0.00430492 Species: Mus musculus Consensus sequence (original motif): BBHHAAAGTCCAMTHH Consensus sequence (reverse complement motif): HHAYTGGACTTTHDBV Alignment: HHAYTGGACTTTHDBV --HVTGCTCTTBH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Reverse Complement Reverse Complement Forward 4 11 0.00467336 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: HHBVHTGACCTTGVDHD ---HVTGCTCTTBH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 160 Motif name: brCAGGGCCrs Consensus sequence (original motif): BVCAGGGCCVB Consensus sequence (reverse complement motif): BBGGCCCTGBB ************************************************************************ Best Matches for Motif ID 160 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Original Motif Forward 4 11 0.00628499 Species: Mus musculus Consensus sequence (original motif): VBHHVCAGGTGCDVDHD Consensus sequence (reverse complement motif): DHDBHGCACCTGBDDVB Alignment: VBHHVCAGGTGCDVDHD ---BVCAGGGCCVB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00095 Zfp691_primary Original Motif Original Motif Forward 3 11 0.00878794 Species: Mus musculus Consensus sequence (original motif): BDHVCAGTGCTCMBHDD Consensus sequence (reverse complement motif): DDHBYGAGCACTGBHHB Alignment: BDHVCAGTGCTCMBHDD --BVCAGGGCCVB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Original Motif Reverse Complement Forward 6 11 0.00959728 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: BBBAVTGCAGTGBBVDD -----BVCAGGGCCVB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_primary Original Motif Original Motif Backward 5 11 0.0163402 Species: Mus musculus Consensus sequence (original motif): DHDBCAAGGTCAHVBDH Consensus sequence (reverse complement motif): HHBVHTGACCTTGVDHD Alignment: DHDBCAAGGTCAHVBDH --BVCAGGGCCVB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Reverse Complement Reverse Complement Forward 7 11 0.0177751 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: DVMHHDHKGACCCTCCTSVCBH ------BBGGCCCTGBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 161 Motif name: ssCGCwGCGss Consensus sequence (original motif): VSCGCDGCGSB Consensus sequence (reverse complement motif): BSCGCDGCGSV ************************************************************************ Best Matches for Motif ID 161 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_secondary Original Motif Reverse Complement Backward 3 11 0 Species: Mus musculus Consensus sequence (original motif): GYCGCGCARBGCVB Consensus sequence (reverse complement motif): VVGCVMTGCGCGKC Alignment: VVGCVMTGCGCGKC -VSCGCDGCGSB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Original Motif Original Motif Forward 4 11 0.00206218 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: DDBBBCACTGCABTBBB ---VSCGCDGCGSB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Original Motif Reverse Complement Forward 4 11 0.010781 Species: Mus musculus Consensus sequence (original motif): WHVBVVMACGCGCGTCDYHWDH Consensus sequence (reverse complement motif): HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW ---VSCGCDGCGSB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_secondary Original Motif Original Motif Backward 7 11 0.0140886 Species: Mus musculus Consensus sequence (original motif): HBHWYGGCGCCAMDVBB Consensus sequence (reverse complement motif): BBBDYTGGCGCCKWDBD Alignment: HBHWYGGCGCCAMDVBB VSCGCDGCGSB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_secondary Original Motif Original Motif Forward 1 11 0.0150699 Species: Mus musculus Consensus sequence (original motif): HVBWYGGCGCCAADVBB Consensus sequence (reverse complement motif): BBBDTTGGCGCCKWVVD Alignment: HVBWYGGCGCCAADVBB VSCGCDGCGSB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 162 Motif name: ccAsCCCCAcc Consensus sequence (original motif): HVASCCCCABH Consensus sequence (reverse complement motif): DBTGGGGSTVD ************************************************************************ Best Matches for Motif ID 162 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00021 Zfp281_secondary Reverse Complement Reverse Complement Backward 4 11 0.00452097 Species: Mus musculus Consensus sequence (original motif): DKKWDACCCCCAHTDDV Consensus sequence (reverse complement motif): VDDAHTGGGGGTHWYYD Alignment: VDDAHTGGGGGTHWYYD ---DBTGGGGSTVD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00024 Glis2_primary Reverse Complement Reverse Complement Backward 4 11 0.00896029 Species: Mus musculus Consensus sequence (original motif): HHHVGACCCCCCVBRD Consensus sequence (reverse complement motif): HKBBGGGGGGTCVHHH Alignment: HKBBGGGGGGTCVHHH --DBTGGGGSTVD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_primary Original Motif Original Motif Backward 3 11 0.010641 Species: Mus musculus Consensus sequence (original motif): HVBCCCCCCCCMHHHB Consensus sequence (reverse complement motif): BHHDYGGGGGGGGBVD Alignment: HVBCCCCCCCCMHHHB ---HVASCCCCABH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_primary Original Motif Original Motif Backward 4 11 0.0169652 Species: Mus musculus Consensus sequence (original motif): HVVHACCCGCATVDHD Consensus sequence (reverse complement motif): DHDVATGCGGGTHVVH Alignment: HVVHACCCGCATVDHD --HVASCCCCABH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_primary Reverse Complement Reverse Complement Backward 1 11 0.0172076 Species: Mus musculus Consensus sequence (original motif): DDVCCCCCCHAAWHB Consensus sequence (reverse complement motif): VHWTTHGGGGGGVDD Alignment: VHWTTHGGGGGGVDD ----DBTGGGGSTVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 163 Motif name: gwGGCCAGmAGAGGGCrby Consensus sequence (original motif): VHGGCCAGMAGAGGGCRBY Consensus sequence (reverse complement motif): KBKGCCCTCTYCTGGCCHV ************************************************************************ Best Matches for Motif ID 163 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Original Motif Forward 1 19 0.0596242 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB VHGGCCAGMAGAGGGCRBY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Reverse Complement Forward 5 19 0.0616662 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB ----KBKGCCCTCTYCTGGCCHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Reverse Complement Forward 4 19 0.0653251 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: VMYDHDGMCCHCCKBGVVAAVH ---KBKGCCCTCTYCTGGCCHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Reverse Complement Original Motif Forward 5 19 0.0654989 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BBBDVVRGACCACCCAVGABBAB ----KBKGCCCTCTYCTGGCCHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Forward 1 19 0.066254 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM KBKGCCCTCTYCTGGCCHV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 164 Motif name: asyAGrkGGCRGCAga Consensus sequence (original motif): ASYAGRKGGCAGCABH Consensus sequence (reverse complement motif): HBTGCTGCCYMCTKST ************************************************************************ Best Matches for Motif ID 164 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Reverse Complement Forward 2 16 0.0281944 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB -ASYAGRKGGCAGCABH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Reverse Complement Reverse Complement Forward 1 16 0.0303833 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: DBBHHTGACCCCTBBYV HBTGCTGCCYMCTKST- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Original Motif Backward 2 16 0.0375379 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB ------ASYAGRKGGCAGCABH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00088 Plagl1_secondary Original Motif Original Motif Backward 2 16 0.0402795 Species: Mus musculus Consensus sequence (original motif): DBHGGGGGGTACCHHHD Consensus sequence (reverse complement motif): DHDDGGTACCCCCCHBH Alignment: DBHGGGGGGTACCHHHD ASYAGRKGGCAGCABH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_primary Original Motif Original Motif Forward 2 16 0.0412697 Species: Mus musculus Consensus sequence (original motif): BDBVMGGGGTCAABHDV Consensus sequence (reverse complement motif): BHHVTTGACCCCYVVDB Alignment: BDBVMGGGGTCAABHDV -ASYAGRKGGCAGCABH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 165 Motif name: wgGCCAshAGrGGGCrsy Consensus sequence (original motif): HDGCCACHAGRGGGCRBY Consensus sequence (reverse complement motif): KBKGCCCKCTHGTGGCHH ************************************************************************ Best Matches for Motif ID 165 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Original Motif Backward 5 18 0.042684 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB -HDGCCACHAGRGGGCRBY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Original Motif Backward 1 18 0.0461274 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: BADHBDHCGCCCMCGCAHHDBBV -----KBKGCCCKCTHGTGGCHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_primary Reverse Complement Reverse Complement Backward 5 18 0.0469346 Species: Mus musculus Consensus sequence (original motif): RDHDBVDTCACGTGASBHVHDH Consensus sequence (reverse complement motif): DDHBHBSTCACGTGAHBBDHHM Alignment: DDHBHBSTCACGTGAHBBDHHM KBKGCCCKCTHGTGGCHH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Original Motif Original Motif Backward 5 18 0.0477902 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH HDGCCACHAGRGGGCRBY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Reverse Complement Reverse Complement Backward 2 18 0.0484261 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB ----KBKGCCCKCTHGTGGCHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 166 Motif name: CasCAGrGGGCrsy Consensus sequence (original motif): CACCAGRGGGCRSB Consensus sequence (reverse complement motif): BSKGCCCKCTGGTG ************************************************************************ Best Matches for Motif ID 166 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Reverse Complement Backward 4 14 0.0233864 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BVVHAGGGGGCGRDHHB CACCAGRGGGCRSB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_secondary Original Motif Original Motif Forward 3 14 0.0278012 Species: Mus musculus Consensus sequence (original motif): HVDDVCAGATGKYHBBV Consensus sequence (reverse complement motif): VBBDMYCATCTGVHHBH Alignment: HVDDVCAGATGKYHBBV --CACCAGRGGGCRSB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Original Motif Forward 1 14 0.0324879 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: VKBBAGGGGTCAHDBBH CACCAGRGGGCRSB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Reverse Complement Forward 1 14 0.0369901 Species: Mus musculus Consensus sequence (original motif): HCCGCCCCCGCAHB Consensus sequence (reverse complement motif): VHTGCGGGGGCGGH Alignment: VHTGCGGGGGCGGH CACCAGRGGGCRSB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Original Motif Original Motif Forward 3 14 0.0370867 Species: Mus musculus Consensus sequence (original motif): BBYVVCAGCTGCBVHHD Consensus sequence (reverse complement motif): HHDVVGCAGCTGVBKVB Alignment: BBYVVCAGCTGCBVHHD --CACCAGRGGGCRSB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 167 Motif name: rsyAGrkGGCGCCmyCTrsy Consensus sequence (original motif): DSYAGRKGGCGCCMYCTRSH Consensus sequence (reverse complement motif): HSKAGKYGGCGCCRMCTMSD ************************************************************************ Best Matches for Motif ID 167 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Reverse Complement Original Motif Backward 1 20 0.0437543 Species: Mus musculus Consensus sequence (original motif): DBBVDDDRTRGCGTCBBYTHGA Consensus sequence (reverse complement motif): TCDAMVBGACGCMAKDDDVBBD Alignment: DBBVDDDRTRGCGTCBBYTHGA --HSKAGKYGGCGCCRMCTMSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v015681_secondary Original Motif Original Motif Backward 1 20 0.0440401 Species: Mus musculus Consensus sequence (original motif): HVGVSAGGAGGGTCYHHHHYVH Consensus sequence (reverse complement motif): DVMHHDHKGACCCTCCTSVCBH Alignment: HVGVSAGGAGGGTCYHHHHYVH --DSYAGRKGGCGCCMYCTRSH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_secondary Original Motif Reverse Complement Backward 2 20 0.0496059 Species: Mus musculus Consensus sequence (original motif): MHHHWHYTMCCHCCCACVAABVH Consensus sequence (reverse complement motif): DVVTTVGTGGGHGGYAMHWHHHY Alignment: DVVTTVGTGGGHGGYAMHWHHHY --DSYAGRKGGCGCCMYCTRSH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Reverse Complement Reverse Complement Forward 3 20 0.0498167 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK --HSKAGKYGGCGCCRMCTMSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Original Motif Reverse Complement Backward 4 20 0.05124 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: BDDHVDKGCCACCCVCGCTDBVH DSYAGRKGGCGCCMYCTRSH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 168 Motif name: yrcrGYGCCMyCTGGtG Consensus sequence (original motif): HVCAGCGCCCYCTGGTG Consensus sequence (reverse complement motif): CACCAGMGGGCGCTGBD ************************************************************************ Best Matches for Motif ID 168 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Original Motif Forward 1 17 0.0436291 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB HVCAGCGCCCYCTGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_primary Original Motif Reverse Complement Forward 3 17 0.0524589 Species: Mus musculus Consensus sequence (original motif): BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence (reverse complement motif): HGDHVHKGACCACCCGGBGBGDB Alignment: HGDHVHKGACCACCCGGBGBGDB --HVCAGCGCCCYCTGGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Reverse Complement Original Motif Backward 3 17 0.0526806 Species: Mus musculus Consensus sequence (original motif): DDRMHBACGCGYGCGTDGBBDB Consensus sequence (reverse complement motif): BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB ---CACCAGMGGGCGCTGBD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Forward 5 17 0.0534316 Species: Mus musculus Consensus sequence (original motif): BADHBDHCGCCCMCGCAHHDBBV Consensus sequence (reverse complement motif): VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ----CACCAGMGGGCGCTGBD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Original Motif Reverse Complement Backward 1 17 0.0549193 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: DBBHHTGACCCCTBBYV HVCAGCGCCCYCTGGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 169 Motif name: yvTGCyGCCmCCwGgtG Consensus sequence (original motif): BVTGCTGCCACCWGGDG Consensus sequence (reverse complement motif): CDCCWGGTGGCAGCAVV ************************************************************************ Best Matches for Motif ID 169 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Original Motif Original Motif Backward 1 17 0.0458967 Species: Mus musculus Consensus sequence (original motif): BDHHMCGCCCCCTHVBB Consensus sequence (reverse complement motif): BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB BVTGCTGCCACCWGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Reverse Complement Original Motif Forward 5 17 0.0491494 Species: Mus musculus Consensus sequence (original motif): DVTTVVCVYGGHGGYCHHDMYB Consensus sequence (reverse complement motif): VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB ----CDCCWGGTGGCAGCAVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00047 Zbtb7b_secondary Original Motif Original Motif Forward 1 17 0.0516119 Species: Mus musculus Consensus sequence (original motif): BDDRVGACCACCHBDVB Consensus sequence (reverse complement motif): BBDVHGGTGGTCBKDDB Alignment: BDDRVGACCACCHBDVB BVTGCTGCCACCWGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v016060_secondary Reverse Complement Original Motif Forward 6 17 0.0546478 Species: Mus musculus Consensus sequence (original motif): HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence (reverse complement motif): BDDHVDKGCCACCCVCGCTDBVH Alignment: HVBDAGCGBGGGTGGCRDBDDDB -----CDCCWGGTGGCAGCAVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Original Motif Original Motif Backward 5 17 0.0549421 Species: Mus musculus Consensus sequence (original motif): RTHBSYCGCCMCMYVCGBTVDH Consensus sequence (reverse complement motif): HDBABCGBKRGYGGCGMSBHAK Alignment: RTHBSYCGCCMCMYVCGBTVDH -BVTGCTGCCACCWGGDG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 170 Motif name: ssGGCrsTGCrs Consensus sequence (original motif): VVGGCRSTGCVB Consensus sequence (reverse complement motif): BVGCASMGCCVV ************************************************************************ Best Matches for Motif ID 170 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Original Motif Original Motif Forward 2 12 0.00823722 Species: Mus musculus Consensus sequence (original motif): DDBBBCACTGCABTBBB Consensus sequence (reverse complement motif): BBBAVTGCAGTGBBVDD Alignment: DDBBBCACTGCABTBBB -VVGGCRSTGCVB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Reverse Complement Original Motif Forward 2 12 0.0121624 Species: Mus musculus Consensus sequence (original motif): DHHBCCCCGCCAHHBHB Consensus sequence (reverse complement motif): BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB -BVGCASMGCCVV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00093 Klf7_primary Reverse Complement Original Motif Forward 2 12 0.0151043 Species: Mus musculus Consensus sequence (original motif): HBDRCCMCGCCCHHHD Consensus sequence (reverse complement motif): DHHDGGGCGRGGKHBH Alignment: HBDRCCMCGCCCHHHD -BVGCASMGCCVV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_secondary Reverse Complement Original Motif Forward 2 12 0.0208726 Species: Mus musculus Consensus sequence (original motif): HVBWYGGCGCCAADVBB Consensus sequence (reverse complement motif): BBBDTTGGCGCCKWVVD Alignment: HVBWYGGCGCCAADVBB -BVGCASMGCCVV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_secondary Reverse Complement Original Motif Forward 2 12 0.0216248 Species: Mus musculus Consensus sequence (original motif): HBHWYGGCGCCAMDVBB Consensus sequence (reverse complement motif): BBBDYTGGCGCCKWDBD Alignment: HBHWYGGCGCCAMDVBB -BVGCASMGCCVV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 171 Motif name: ysGTGGCCACsr Consensus sequence (original motif): BVGTGGCCACBV Consensus sequence (reverse complement motif): VBGTGGCCACVB ************************************************************************ Best Matches for Motif ID 171 (Highest to Lowest) ************************************************************************* Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00053 Rxra_primary Reverse Complement Reverse Complement Backward 3 12 0 Species: Mus musculus Consensus sequence (original motif): DBHBDTGACCCCDHVHB Consensus sequence (reverse complement motif): VHBHDGGGGTCAHBHBD Alignment: VHBHDGGGGTCAHBHBD ---VBGTGGCCACVB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00035 Hic1_secondary Original Motif Reverse Complement Backward 3 12 0.00337191 Species: Mus musculus Consensus sequence (original motif): DBDDRTGCCCAWDHDV Consensus sequence (reverse complement motif): VHHDWTGGGCAMDHBH Alignment: VHHDWTGGGCAMDHBH --BVGTGGCCACBV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00079 Esrra_secondary Reverse Complement Reverse Complement Forward 3 12 0.0057729 Species: Mus musculus Consensus sequence (original motif): VKBBAGGGGTCAHDBBH Consensus sequence (reverse complement motif): DBBHHTGACCCCTBBYV Alignment: DBBHHTGACCCCTBBYV --VBGTGGCCACVB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00538 Gli1_v015681_primary Original Motif Reverse Complement Forward 9 12 0.00780464 Species: Mus musculus Consensus sequence (original motif): BBBDVVRGACCACCCAVGABBAB Consensus sequence (reverse complement motif): BTBVTCVTGGGTGGTCMVVDVBB Alignment: BTBVTCVTGGGTGGTCMVVDVBB --------BVGTGGCCACBV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00066 Hnf4a_primary Original Motif Reverse Complement Forward 3 12 0.00915211 Species: Mus musculus Consensus sequence (original motif): BDBVMGGGGTCAABHDV Consensus sequence (reverse complement motif): BHHVTTGACCCCYVVDB Alignment: BHHVTTGACCCCYVVDB --BVGTGGCCACBV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-18-2018 16:50:38 Runtime: 1017.73 seconds MOTIFSIM is written by Ngoc Tam L. 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