**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 4 Number of top significant motifs: 10 Number of best matches: 5 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # DREME_DM254.txt 45 1 MEME-CHIP_DM254.txt 24 2 PScanChIP_DM254.txt 63 3 RSAT_peak-motifs_DM254.txt 39 4 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ****************************************************************** Top 10 Significant Motifs - Global Matching (Highest to Lowest) ****************************************************************** Dataset #: 2 Motif ID: 46 Motif name: Motif 46 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.525949 0.000000 0.474051 0.000000 0.000000 0.000000 0.647468 0.352532 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.568987 0.000000 0.431013 0.000000 Consensus sequence: AGRKGGCR Reverse complement motif 0.000000 0.000000 0.431013 0.568987 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.647468 0.000000 0.352532 0.000000 0.000000 0.474051 0.525949 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: KGCCYKCT *************************************************************** Best Matches for Top Significant Motif ID 46 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 Motif 1 Original Motif Original Motif Forward 1 8 0.000000 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.519374 0.000000 0.480626 0.000000 0.000000 0.000000 0.651617 0.348383 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.572343 0.000000 0.427657 0.000000 Consensus sequence: AGRKGGCR Reverse complement motif 0.000000 0.000000 0.427657 0.572343 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.651617 0.000000 0.348383 0.000000 0.000000 0.480626 0.519374 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: KGCCYKCT Alignment: AGRKGGCR AGRKGGCR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 147 asCAGrkGGCrsy Original Motif Original Motif Forward 4 8 0.006515 Original motif 0.587983 0.098712 0.191416 0.121888 0.103863 0.382833 0.461803 0.051502 0.003433 0.969099 0.014592 0.012876 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.454077 0.000000 0.545923 0.000000 0.000000 0.000000 0.674678 0.325322 0.000000 0.064378 0.935622 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.509871 0.000000 0.490129 0.000000 0.105579 0.412017 0.388841 0.093562 0.151073 0.349356 0.167382 0.332189 Consensus sequence: ASCAGRGGGCRSB Reverse complement motif 0.151073 0.167382 0.349356 0.332189 0.105579 0.388841 0.412017 0.093562 0.000000 0.000000 0.490129 0.509871 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.935622 0.064378 0.000000 0.000000 0.674678 0.000000 0.325322 0.454077 0.545923 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.003433 0.014592 0.969099 0.012876 0.103863 0.461803 0.382833 0.051502 0.121888 0.098712 0.191416 0.587983 Consensus sequence: BSKGCCCMCTGST Alignment: ASCAGRGGGCRSB ---AGRKGGCR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 165 wgGCCAshAGrGGGCrsy Reverse Complement Reverse Complement Backward 9 8 0.010244 Original motif 0.300077 0.238206 0.115236 0.346481 0.192575 0.119876 0.495746 0.191802 0.150039 0.032483 0.726218 0.091261 0.034029 0.932715 0.010828 0.022428 0.000000 0.998453 0.001547 0.000000 0.876257 0.002320 0.028616 0.092807 0.015468 0.650425 0.324826 0.009281 0.370456 0.312452 0.003867 0.313225 0.981439 0.006961 0.008507 0.003094 0.000000 0.000000 1.000000 0.000000 0.655839 0.000773 0.333333 0.010054 0.003094 0.003867 0.757154 0.235886 0.003094 0.000000 0.996906 0.000000 0.007734 0.001547 0.981439 0.009281 0.013921 0.976798 0.002320 0.006961 0.576179 0.005414 0.409899 0.008507 0.080433 0.429234 0.314772 0.175561 0.119876 0.426141 0.108275 0.345708 Consensus sequence: HDGCCACHAGRGGGCRBY Reverse complement motif 0.119876 0.108275 0.426141 0.345708 0.080433 0.314772 0.429234 0.175561 0.008507 0.005414 0.409899 0.576179 0.013921 0.002320 0.976798 0.006961 0.007734 0.981439 0.001547 0.009281 0.003094 0.996906 0.000000 0.000000 0.003094 0.757154 0.003867 0.235886 0.010054 0.000773 0.333333 0.655839 0.000000 1.000000 0.000000 0.000000 0.003094 0.006961 0.008507 0.981439 0.313225 0.312452 0.003867 0.370456 0.015468 0.324826 0.650425 0.009281 0.092807 0.002320 0.028616 0.876257 0.000000 0.001547 0.998453 0.000000 0.034029 0.010828 0.932715 0.022428 0.150039 0.726218 0.032483 0.091261 0.192575 0.495746 0.119876 0.191802 0.346481 0.238206 0.115236 0.300077 Consensus sequence: KBKGCCCKCTHGTGGCHH Alignment: KBKGCCCKCTHGTGGCHH --KGCCYKCT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 166 CasCAGrGGGCrsy Original Motif Original Motif Forward 5 8 0.010495 Original motif 0.079195 0.837584 0.052349 0.030872 0.622819 0.068456 0.214765 0.093960 0.056376 0.655034 0.269799 0.018792 0.002685 0.916779 0.012081 0.068456 0.998658 0.001342 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.638926 0.000000 0.361074 0.000000 0.000000 0.000000 0.809396 0.190604 0.000000 0.026846 0.973154 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.522148 0.001342 0.476510 0.000000 0.100671 0.425503 0.365101 0.108725 0.157047 0.359732 0.158389 0.324832 Consensus sequence: CACCAGRGGGCRSB Reverse complement motif 0.157047 0.158389 0.359732 0.324832 0.100671 0.365101 0.425503 0.108725 0.000000 0.001342 0.476510 0.522148 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.973154 0.026846 0.000000 0.000000 0.809396 0.000000 0.190604 0.000000 0.000000 0.361074 0.638926 0.000000 1.000000 0.000000 0.000000 0.000000 0.001342 0.000000 0.998658 0.002685 0.012081 0.916779 0.068456 0.056376 0.269799 0.655034 0.018792 0.093960 0.068456 0.214765 0.622819 0.079195 0.052349 0.837584 0.030872 Consensus sequence: BSKGCCCKCTGGTG Alignment: CACCAGRGGGCRSB ----AGRKGGCR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 163 gwGGCCAGmAGAGGGCrby Reverse Complement Reverse Complement Forward 3 8 0.016582 Original motif 0.199480 0.184735 0.461405 0.154380 0.420642 0.165655 0.100607 0.313096 0.106678 0.074588 0.701648 0.117086 0.140503 0.034692 0.753686 0.071119 0.034692 0.925412 0.013877 0.026019 0.001735 0.995663 0.002602 0.000000 0.937554 0.003469 0.023417 0.035559 0.019948 0.183868 0.783174 0.013010 0.458803 0.355594 0.026886 0.158716 0.990460 0.003469 0.005204 0.000867 0.000000 0.000000 1.000000 0.000000 0.758023 0.002602 0.238508 0.000867 0.001735 0.005204 0.851691 0.141370 0.001735 0.000867 0.996531 0.000867 0.006071 0.001735 0.983521 0.008673 0.023417 0.947095 0.002602 0.026886 0.562879 0.011275 0.421509 0.004337 0.063313 0.427580 0.257589 0.251518 0.101474 0.471813 0.091934 0.334779 Consensus sequence: VHGGCCAGMAGAGGGCRBY Reverse complement motif 0.101474 0.091934 0.471813 0.334779 0.063313 0.257589 0.427580 0.251518 0.004337 0.011275 0.421509 0.562879 0.023417 0.002602 0.947095 0.026886 0.006071 0.983521 0.001735 0.008673 0.001735 0.996531 0.000867 0.000867 0.001735 0.851691 0.005204 0.141370 0.000867 0.002602 0.238508 0.758023 0.000000 1.000000 0.000000 0.000000 0.000867 0.003469 0.005204 0.990460 0.158716 0.355594 0.026886 0.458803 0.019948 0.783174 0.183868 0.013010 0.035559 0.003469 0.023417 0.937554 0.001735 0.002602 0.995663 0.000000 0.034692 0.013877 0.925412 0.026019 0.140503 0.753686 0.034692 0.071119 0.106678 0.701648 0.074588 0.117086 0.313096 0.165655 0.100607 0.420642 0.199480 0.461405 0.184735 0.154380 Consensus sequence: KBKGCCCTCTYCTGGCCHV Alignment: KBKGCCCTCTYCTGGCCHV --KGCCYKCT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 8 Motif name: Motif 8 Original motif 1.000000 0.000000 0.000000 0.000000 0.711236 0.000000 0.000000 0.288764 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.340717 0.354813 0.000000 0.304470 Consensus sequence: AAATAH Reverse complement motif 0.340717 0.000000 0.354813 0.304470 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.288764 0.000000 0.000000 0.711236 0.000000 0.000000 0.000000 1.000000 Consensus sequence: DTATTT *************************************************************** Best Matches for Top Significant Motif ID 8 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 150 waATwAAAATAww Original Motif Original Motif Backward 2 6 0.002242 Original motif 0.415667 0.148681 0.150280 0.285372 0.434053 0.178257 0.139089 0.248601 0.825739 0.043165 0.031974 0.099121 0.078337 0.031175 0.029576 0.860911 0.537170 0.005596 0.023981 0.433253 0.918465 0.025580 0.018385 0.037570 0.935252 0.010392 0.011990 0.042366 0.946443 0.021583 0.007994 0.023981 0.927258 0.019984 0.015987 0.036771 0.071143 0.060751 0.037570 0.830536 0.881695 0.032774 0.048761 0.036771 0.442046 0.158273 0.142286 0.257394 0.428457 0.135891 0.147082 0.288569 Consensus sequence: DHATWAAAATAHD Reverse complement motif 0.288569 0.135891 0.147082 0.428457 0.257394 0.158273 0.142286 0.442046 0.036771 0.032774 0.048761 0.881695 0.830536 0.060751 0.037570 0.071143 0.036771 0.019984 0.015987 0.927258 0.023981 0.021583 0.007994 0.946443 0.042366 0.010392 0.011990 0.935252 0.037570 0.025580 0.018385 0.918465 0.433253 0.005596 0.023981 0.537170 0.860911 0.031175 0.029576 0.078337 0.099121 0.043165 0.031974 0.825739 0.248601 0.178257 0.139089 0.434053 0.285372 0.148681 0.150280 0.415667 Consensus sequence: DHTATTTTWATHD Alignment: DHATWAAAATAHD ------AAATAH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 157 wtATTTTTAww Original Motif Reverse Complement Backward 1 6 0.005564 Original motif 0.291793 0.136778 0.164134 0.407295 0.191489 0.156535 0.124620 0.527356 0.995441 0.000000 0.004559 0.000000 0.010638 0.001520 0.001520 0.986322 0.089666 0.001520 0.004559 0.904255 0.085106 0.004559 0.003040 0.907295 0.091185 0.001520 0.001520 0.905775 0.007599 0.003040 0.001520 0.987842 0.998480 0.001520 0.000000 0.000000 0.282675 0.132219 0.113982 0.471125 0.363222 0.101824 0.141337 0.393617 Consensus sequence: DTATTTTTAWW Reverse complement motif 0.393617 0.101824 0.141337 0.363222 0.471125 0.132219 0.113982 0.282675 0.000000 0.001520 0.000000 0.998480 0.987842 0.003040 0.001520 0.007599 0.905775 0.001520 0.001520 0.091185 0.907295 0.004559 0.003040 0.085106 0.904255 0.001520 0.004559 0.089666 0.986322 0.001520 0.001520 0.010638 0.000000 0.000000 0.004559 0.995441 0.527356 0.156535 0.124620 0.191489 0.407295 0.136778 0.164134 0.291793 Consensus sequence: WWTAAAAATAD Alignment: WWTAAAAATAD -----AAATAH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 68 Motif 68 Original Motif Original Motif Forward 5 6 0.012883 Original motif 0.545454 0.136364 0.000000 0.318182 0.909091 0.000000 0.000000 0.090909 0.772727 0.000000 0.227273 0.000000 0.500000 0.000000 0.000000 0.500000 0.954545 0.000000 0.000000 0.045455 0.909091 0.000000 0.000000 0.090909 1.000000 0.000000 0.000000 0.000000 0.454545 0.000000 0.090909 0.454545 0.954545 0.045455 0.000000 0.000000 0.636364 0.000000 0.000000 0.363636 0.636364 0.000000 0.000000 0.363636 0.590909 0.000000 0.000000 0.409091 1.000000 0.000000 0.000000 0.000000 0.818181 0.045455 0.000000 0.136364 Consensus sequence: WAAWAAAWAWWWAA Reverse complement motif 0.136364 0.045455 0.000000 0.818181 0.000000 0.000000 0.000000 1.000000 0.409091 0.000000 0.000000 0.590909 0.363636 0.000000 0.000000 0.636364 0.363636 0.000000 0.000000 0.636364 0.000000 0.045455 0.000000 0.954545 0.454545 0.000000 0.090909 0.454545 0.000000 0.000000 0.000000 1.000000 0.090909 0.000000 0.000000 0.909091 0.045455 0.000000 0.000000 0.954545 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.227273 0.772727 0.090909 0.000000 0.000000 0.909091 0.318182 0.136364 0.000000 0.545454 Consensus sequence: TTWWWTWTTTWTTW Alignment: WAAWAAAWAWWWAA ----AAATAH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 52 Motif 52 Original Motif Original Motif Forward 1 6 0.016730 Original motif 0.666667 0.000000 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.542857 0.000000 0.000000 0.457143 Consensus sequence: AAATAAAW Reverse complement motif 0.457143 0.000000 0.000000 0.542857 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.333333 0.000000 0.000000 0.666667 Consensus sequence: WTTTATTT Alignment: AAATAAAW AAATAH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 118 SRF Original Motif Original Motif Backward 3 6 0.021049 Original motif 0.043478 0.021739 0.847826 0.086957 0.195652 0.717391 0.043478 0.043478 0.000000 0.978261 0.021739 0.000000 0.021739 0.978261 0.000000 0.000000 0.695652 0.021739 0.000000 0.282609 0.065217 0.021739 0.000000 0.913043 1.000000 0.000000 0.000000 0.000000 0.021739 0.000000 0.000000 0.978261 0.934783 0.000000 0.000000 0.065217 0.326087 0.021739 0.000000 0.652174 0.043478 0.000000 0.956522 0.000000 0.043478 0.021739 0.934783 0.000000 Consensus sequence: GCCCATATATGG Reverse complement motif 0.043478 0.934783 0.021739 0.000000 0.043478 0.956522 0.000000 0.000000 0.652174 0.021739 0.000000 0.326087 0.065217 0.000000 0.000000 0.934783 0.978261 0.000000 0.000000 0.021739 0.000000 0.000000 0.000000 1.000000 0.913043 0.021739 0.000000 0.065217 0.282609 0.021739 0.000000 0.695652 0.021739 0.000000 0.978261 0.000000 0.000000 0.021739 0.978261 0.000000 0.195652 0.043478 0.717391 0.043478 0.043478 0.847826 0.021739 0.086957 Consensus sequence: CCATATATGGGC Alignment: GCCCATATATGG ----AAATAH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 20 Motif name: Motif 20 Original motif 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.376368 0.000000 0.623632 0.000000 Consensus sequence: CACGTR Reverse complement motif 0.376368 0.623632 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: MACGTG *************************************************************** Best Matches for Top Significant Motif ID 20 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 71 Arnt Original Motif Reverse Complement Backward 1 6 0.000000 Original motif 0.200000 0.800000 0.000000 0.000000 0.950000 0.000000 0.050000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: CACGTG Reverse complement motif 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.050000 0.950000 0.200000 0.000000 0.800000 0.000000 Consensus sequence: CACGTG Alignment: CACGTG CACGTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 95 MYCMAX Reverse Complement Original Motif Forward 4 6 0.010218 Original motif 0.333333 0.047619 0.428571 0.190476 0.714286 0.047619 0.190476 0.047619 0.095238 0.428571 0.428571 0.047619 0.047619 0.952381 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.952381 0.000000 0.047619 0.047619 0.000000 0.952381 0.000000 0.000000 0.047619 0.000000 0.952381 0.000000 0.000000 1.000000 0.000000 0.047619 0.047619 0.857143 0.047619 0.142857 0.238095 0.000000 0.619048 Consensus sequence: RASCACGTGGT Reverse complement motif 0.619048 0.238095 0.000000 0.142857 0.047619 0.857143 0.047619 0.047619 0.000000 1.000000 0.000000 0.000000 0.952381 0.047619 0.000000 0.000000 0.047619 0.952381 0.000000 0.000000 0.000000 0.000000 0.952381 0.047619 0.000000 0.000000 0.000000 1.000000 0.047619 0.000000 0.952381 0.000000 0.095238 0.428571 0.428571 0.047619 0.047619 0.047619 0.190476 0.714286 0.333333 0.428571 0.047619 0.190476 Consensus sequence: ACCACGTGSTM Alignment: RASCACGTGGT ---MACGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 91 MAX Original Motif Original Motif Forward 4 6 0.011152 Original motif 0.352941 0.058824 0.352941 0.235294 0.647059 0.058824 0.294118 0.000000 0.294118 0.411765 0.058824 0.235294 0.000000 1.000000 0.000000 0.000000 0.941176 0.058824 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.058824 0.000000 0.941176 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.352941 0.176471 0.294118 0.176471 Consensus sequence: DAHCACGTGD Reverse complement motif 0.176471 0.176471 0.294118 0.352941 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.058824 0.941176 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.058824 0.000000 0.941176 0.000000 0.000000 1.000000 0.000000 0.294118 0.058824 0.411765 0.235294 0.000000 0.058824 0.294118 0.647059 0.235294 0.058824 0.352941 0.352941 Consensus sequence: BCACGTGDTD Alignment: DAHCACGTGD ---CACGTR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 126 USF1 Original Motif Reverse Complement Forward 2 6 0.013194 Original motif 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.933333 0.000000 0.066667 0.033333 0.000000 0.966667 0.000000 0.000000 0.033333 0.033333 0.933333 0.000000 0.000000 1.000000 0.000000 0.300000 0.066667 0.466667 0.166667 Consensus sequence: CACGTGR Reverse complement motif 0.300000 0.466667 0.066667 0.166667 0.000000 1.000000 0.000000 0.000000 0.933333 0.033333 0.033333 0.000000 0.033333 0.966667 0.000000 0.000000 0.000000 0.000000 0.933333 0.066667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: MCACGTG Alignment: MCACGTG -CACGTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 94 Myc Original Motif Reverse Complement Backward 3 6 0.025340 Original motif 0.295154 0.422907 0.158590 0.123348 0.149780 0.233480 0.572687 0.044053 0.035242 0.964758 0.000000 0.000000 0.955947 0.017621 0.022026 0.004405 0.000000 0.933921 0.013216 0.052863 0.083700 0.008811 0.898678 0.008811 0.039648 0.193833 0.000000 0.766520 0.000000 0.008811 0.951542 0.039648 0.000000 0.074890 0.806167 0.118943 0.198238 0.471366 0.105727 0.224670 Consensus sequence: VGCACGTGGH Reverse complement motif 0.198238 0.105727 0.471366 0.224670 0.000000 0.806167 0.074890 0.118943 0.000000 0.951542 0.008811 0.039648 0.766520 0.193833 0.000000 0.039648 0.083700 0.898678 0.008811 0.008811 0.000000 0.013216 0.933921 0.052863 0.004405 0.017621 0.022026 0.955947 0.035242 0.000000 0.964758 0.000000 0.149780 0.572687 0.233480 0.044053 0.295154 0.158590 0.422907 0.123348 Consensus sequence: DCCACGTGCV Alignment: DCCACGTGCV --CACGTR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.519374 0.000000 0.480626 0.000000 0.000000 0.000000 0.651617 0.348383 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.572343 0.000000 0.427657 0.000000 Consensus sequence: AGRKGGCR Reverse complement motif 0.000000 0.000000 0.427657 0.572343 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.651617 0.000000 0.348383 0.000000 0.000000 0.480626 0.519374 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: KGCCYKCT *************************************************************** Best Matches for Top Significant Motif ID 1 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 46 Motif 46 Original Motif Original Motif Forward 1 8 0.000000 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.525949 0.000000 0.474051 0.000000 0.000000 0.000000 0.647468 0.352532 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.568987 0.000000 0.431013 0.000000 Consensus sequence: AGRKGGCR Reverse complement motif 0.000000 0.000000 0.431013 0.568987 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.647468 0.000000 0.352532 0.000000 0.000000 0.474051 0.525949 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: KGCCYKCT Alignment: AGRKGGCR AGRKGGCR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 147 asCAGrkGGCrsy Original Motif Original Motif Backward 3 8 0.006285 Original motif 0.587983 0.098712 0.191416 0.121888 0.103863 0.382833 0.461803 0.051502 0.003433 0.969099 0.014592 0.012876 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.454077 0.000000 0.545923 0.000000 0.000000 0.000000 0.674678 0.325322 0.000000 0.064378 0.935622 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.509871 0.000000 0.490129 0.000000 0.105579 0.412017 0.388841 0.093562 0.151073 0.349356 0.167382 0.332189 Consensus sequence: ASCAGRGGGCRSB Reverse complement motif 0.151073 0.167382 0.349356 0.332189 0.105579 0.388841 0.412017 0.093562 0.000000 0.000000 0.490129 0.509871 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.935622 0.064378 0.000000 0.000000 0.674678 0.000000 0.325322 0.454077 0.545923 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.003433 0.014592 0.969099 0.012876 0.103863 0.461803 0.382833 0.051502 0.121888 0.098712 0.191416 0.587983 Consensus sequence: BSKGCCCMCTGST Alignment: ASCAGRGGGCRSB ---AGRKGGCR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 165 wgGCCAshAGrGGGCrsy Original Motif Original Motif Backward 3 8 0.010215 Original motif 0.300077 0.238206 0.115236 0.346481 0.192575 0.119876 0.495746 0.191802 0.150039 0.032483 0.726218 0.091261 0.034029 0.932715 0.010828 0.022428 0.000000 0.998453 0.001547 0.000000 0.876257 0.002320 0.028616 0.092807 0.015468 0.650425 0.324826 0.009281 0.370456 0.312452 0.003867 0.313225 0.981439 0.006961 0.008507 0.003094 0.000000 0.000000 1.000000 0.000000 0.655839 0.000773 0.333333 0.010054 0.003094 0.003867 0.757154 0.235886 0.003094 0.000000 0.996906 0.000000 0.007734 0.001547 0.981439 0.009281 0.013921 0.976798 0.002320 0.006961 0.576179 0.005414 0.409899 0.008507 0.080433 0.429234 0.314772 0.175561 0.119876 0.426141 0.108275 0.345708 Consensus sequence: HDGCCACHAGRGGGCRBY Reverse complement motif 0.119876 0.108275 0.426141 0.345708 0.080433 0.314772 0.429234 0.175561 0.008507 0.005414 0.409899 0.576179 0.013921 0.002320 0.976798 0.006961 0.007734 0.981439 0.001547 0.009281 0.003094 0.996906 0.000000 0.000000 0.003094 0.757154 0.003867 0.235886 0.010054 0.000773 0.333333 0.655839 0.000000 1.000000 0.000000 0.000000 0.003094 0.006961 0.008507 0.981439 0.313225 0.312452 0.003867 0.370456 0.015468 0.324826 0.650425 0.009281 0.092807 0.002320 0.028616 0.876257 0.000000 0.001547 0.998453 0.000000 0.034029 0.010828 0.932715 0.022428 0.150039 0.726218 0.032483 0.091261 0.192575 0.495746 0.119876 0.191802 0.346481 0.238206 0.115236 0.300077 Consensus sequence: KBKGCCCKCTHGTGGCHH Alignment: HDGCCACHAGRGGGCRBY --------AGRKGGCR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 166 CasCAGrGGGCrsy Reverse Complement Reverse Complement Forward 3 8 0.010676 Original motif 0.079195 0.837584 0.052349 0.030872 0.622819 0.068456 0.214765 0.093960 0.056376 0.655034 0.269799 0.018792 0.002685 0.916779 0.012081 0.068456 0.998658 0.001342 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.638926 0.000000 0.361074 0.000000 0.000000 0.000000 0.809396 0.190604 0.000000 0.026846 0.973154 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.522148 0.001342 0.476510 0.000000 0.100671 0.425503 0.365101 0.108725 0.157047 0.359732 0.158389 0.324832 Consensus sequence: CACCAGRGGGCRSB Reverse complement motif 0.157047 0.158389 0.359732 0.324832 0.100671 0.365101 0.425503 0.108725 0.000000 0.001342 0.476510 0.522148 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.973154 0.026846 0.000000 0.000000 0.809396 0.000000 0.190604 0.000000 0.000000 0.361074 0.638926 0.000000 1.000000 0.000000 0.000000 0.000000 0.001342 0.000000 0.998658 0.002685 0.012081 0.916779 0.068456 0.056376 0.269799 0.655034 0.018792 0.093960 0.068456 0.214765 0.622819 0.079195 0.052349 0.837584 0.030872 Consensus sequence: BSKGCCCKCTGGTG Alignment: BSKGCCCKCTGGTG --KGCCYKCT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 163 gwGGCCAGmAGAGGGCrby Reverse Complement Reverse Complement Forward 3 8 0.016658 Original motif 0.199480 0.184735 0.461405 0.154380 0.420642 0.165655 0.100607 0.313096 0.106678 0.074588 0.701648 0.117086 0.140503 0.034692 0.753686 0.071119 0.034692 0.925412 0.013877 0.026019 0.001735 0.995663 0.002602 0.000000 0.937554 0.003469 0.023417 0.035559 0.019948 0.183868 0.783174 0.013010 0.458803 0.355594 0.026886 0.158716 0.990460 0.003469 0.005204 0.000867 0.000000 0.000000 1.000000 0.000000 0.758023 0.002602 0.238508 0.000867 0.001735 0.005204 0.851691 0.141370 0.001735 0.000867 0.996531 0.000867 0.006071 0.001735 0.983521 0.008673 0.023417 0.947095 0.002602 0.026886 0.562879 0.011275 0.421509 0.004337 0.063313 0.427580 0.257589 0.251518 0.101474 0.471813 0.091934 0.334779 Consensus sequence: VHGGCCAGMAGAGGGCRBY Reverse complement motif 0.101474 0.091934 0.471813 0.334779 0.063313 0.257589 0.427580 0.251518 0.004337 0.011275 0.421509 0.562879 0.023417 0.002602 0.947095 0.026886 0.006071 0.983521 0.001735 0.008673 0.001735 0.996531 0.000867 0.000867 0.001735 0.851691 0.005204 0.141370 0.000867 0.002602 0.238508 0.758023 0.000000 1.000000 0.000000 0.000000 0.000867 0.003469 0.005204 0.990460 0.158716 0.355594 0.026886 0.458803 0.019948 0.783174 0.183868 0.013010 0.035559 0.003469 0.023417 0.937554 0.001735 0.002602 0.995663 0.000000 0.034692 0.013877 0.925412 0.026019 0.140503 0.753686 0.034692 0.071119 0.106678 0.701648 0.074588 0.117086 0.313096 0.165655 0.100607 0.420642 0.199480 0.461405 0.184735 0.154380 Consensus sequence: KBKGCCCTCTYCTGGCCHV Alignment: KBKGCCCTCTYCTGGCCHV --KGCCYKCT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 164 asyAGrkGGCRGCAga Original Motif Original Motif Forward 4 8 0.020185 Original motif 0.624233 0.092025 0.130368 0.153374 0.088957 0.496933 0.345092 0.069018 0.035276 0.483129 0.030675 0.450920 0.883436 0.007669 0.013804 0.095092 0.009202 0.003067 0.980061 0.007669 0.348160 0.003067 0.645706 0.003067 0.004601 0.004601 0.507669 0.483129 0.012270 0.000000 0.981595 0.006135 0.007669 0.007669 0.980061 0.004601 0.001534 0.987730 0.001534 0.009202 0.722393 0.004601 0.269939 0.003067 0.050613 0.157975 0.768405 0.023006 0.026074 0.814417 0.055215 0.104294 0.911043 0.035276 0.029141 0.024540 0.171779 0.230061 0.374233 0.223926 0.391104 0.222393 0.179448 0.207055 Consensus sequence: ASYAGRKGGCAGCABH Reverse complement motif 0.207055 0.222393 0.179448 0.391104 0.171779 0.374233 0.230061 0.223926 0.024540 0.035276 0.029141 0.911043 0.026074 0.055215 0.814417 0.104294 0.050613 0.768405 0.157975 0.023006 0.003067 0.004601 0.269939 0.722393 0.001534 0.001534 0.987730 0.009202 0.007669 0.980061 0.007669 0.004601 0.012270 0.981595 0.000000 0.006135 0.004601 0.507669 0.004601 0.483129 0.348160 0.645706 0.003067 0.003067 0.009202 0.980061 0.003067 0.007669 0.095092 0.007669 0.013804 0.883436 0.035276 0.030675 0.483129 0.450920 0.088957 0.345092 0.496933 0.069018 0.153374 0.092025 0.130368 0.624233 Consensus sequence: HBTGCTGCCYMCTKST Alignment: ASYAGRKGGCAGCABH ---AGRKGGCR----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 127 Motif name: YY1 Original motif 0.352941 0.058824 0.411765 0.176471 0.000000 0.941176 0.000000 0.058824 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.176471 0.470588 0.176471 0.176471 Consensus sequence: RCCATB Reverse complement motif 0.176471 0.176471 0.470588 0.176471 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.941176 0.058824 0.352941 0.411765 0.058824 0.176471 Consensus sequence: BATGGM *************************************************************** Best Matches for Top Significant Motif ID 127 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 61 Motif 61 Reverse Complement Original Motif Backward 2 6 0.001225 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.515924 0.000000 0.484076 Consensus sequence: AGATGGY Reverse complement motif 0.000000 0.000000 0.515924 0.484076 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: KCCATCT Alignment: AGATGGY BATGGM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 12 Motif 12 Reverse Complement Original Motif Backward 1 6 0.008578 Original motif 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.702703 0.000000 0.297297 Consensus sequence: GATGGCTC Reverse complement motif 0.000000 0.000000 0.702703 0.297297 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: GAGCCATC Alignment: GATGGCTC --BATGGM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 145 grCCACyAGAkG Reverse Complement Reverse Complement Backward 2 6 0.022036 Original motif 0.217391 0.215321 0.339545 0.227743 0.296066 0.126294 0.380952 0.196687 0.000000 0.997930 0.002070 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.503106 0.000000 0.496894 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.995859 0.002070 0.000000 0.002070 0.084886 0.060041 0.511387 0.343685 0.064182 0.089027 0.784679 0.062112 Consensus sequence: DDCCACYAGAKG Reverse complement motif 0.064182 0.784679 0.089027 0.062112 0.084886 0.511387 0.060041 0.343685 0.002070 0.002070 0.000000 0.995859 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.503106 0.496894 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.002070 0.997930 0.000000 0.296066 0.380952 0.126294 0.196687 0.217391 0.339545 0.215321 0.227743 Consensus sequence: CYTCTKGTGGHH Alignment: CYTCTKGTGGHH -----BATGGM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 138 grCCACyAGAkG Original Motif Original Motif Forward 2 6 0.022368 Original motif 0.226087 0.207453 0.324224 0.242236 0.304348 0.136646 0.366460 0.192547 0.045963 0.911801 0.011180 0.031056 0.001242 0.993789 0.002484 0.002484 0.988820 0.000000 0.011180 0.000000 0.003727 0.995031 0.001242 0.000000 0.206211 0.300621 0.007453 0.485714 0.998758 0.001242 0.000000 0.000000 0.000000 0.001242 0.992547 0.006211 0.929193 0.012422 0.034783 0.023602 0.106832 0.090683 0.465839 0.336646 0.095652 0.109317 0.713043 0.081988 Consensus sequence: DDCCACYAGAKG Reverse complement motif 0.095652 0.713043 0.109317 0.081988 0.106832 0.465839 0.090683 0.336646 0.023602 0.012422 0.034783 0.929193 0.000000 0.992547 0.001242 0.006211 0.000000 0.001242 0.000000 0.998758 0.485714 0.300621 0.007453 0.206211 0.003727 0.001242 0.995031 0.000000 0.000000 0.000000 0.011180 0.988820 0.001242 0.002484 0.993789 0.002484 0.045963 0.011180 0.911801 0.031056 0.304348 0.366460 0.136646 0.192547 0.226087 0.324224 0.207453 0.242236 Consensus sequence: CYTCTMGTGGHH Alignment: DDCCACYAGAKG -RCCATB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 156 rgyGCCMyCTksTGGccd Original Motif Reverse Complement Forward 3 6 0.027550 Original motif 0.353158 0.104657 0.420009 0.122176 0.180728 0.245735 0.491471 0.082065 0.010143 0.593361 0.009221 0.387275 0.035039 0.003688 0.852467 0.108806 0.012448 0.976487 0.003227 0.007838 0.001844 0.990779 0.003688 0.003688 0.251729 0.729368 0.010143 0.008760 0.001844 0.426925 0.001844 0.569387 0.001383 0.994929 0.001844 0.001844 0.011526 0.016136 0.018903 0.953435 0.131858 0.039189 0.426003 0.402951 0.009221 0.557400 0.414477 0.018903 0.047948 0.054864 0.009682 0.887506 0.001844 0.005533 0.988474 0.004149 0.028124 0.024896 0.908714 0.038266 0.112494 0.635777 0.052098 0.199631 0.185800 0.470724 0.152144 0.191332 0.314431 0.126787 0.260028 0.298755 Consensus sequence: RVYGCCCYCTKSTGGCHD Reverse complement motif 0.298755 0.126787 0.260028 0.314431 0.185800 0.152144 0.470724 0.191332 0.112494 0.052098 0.635777 0.199631 0.028124 0.908714 0.024896 0.038266 0.001844 0.988474 0.005533 0.004149 0.887506 0.054864 0.009682 0.047948 0.009221 0.414477 0.557400 0.018903 0.131858 0.426003 0.039189 0.402951 0.953435 0.016136 0.018903 0.011526 0.001383 0.001844 0.994929 0.001844 0.569387 0.426925 0.001844 0.001844 0.251729 0.010143 0.729368 0.008760 0.001844 0.003688 0.990779 0.003688 0.012448 0.003227 0.976487 0.007838 0.035039 0.852467 0.003688 0.108806 0.010143 0.009221 0.593361 0.387275 0.180728 0.491471 0.245735 0.082065 0.353158 0.420009 0.104657 0.122176 Consensus sequence: DDGCCASYAGMGGGCKVM Alignment: DDGCCASYAGMGGGCKVM --RCCATB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 48 Motif name: Motif 48 Original motif 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.536657 0.000000 0.463343 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.413490 0.000000 0.586510 0.000000 Consensus sequence: CCACYAGR Reverse complement motif 0.413490 0.586510 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.536657 0.463343 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: MCTKGTGG *************************************************************** Best Matches for Top Significant Motif ID 48 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 21 Motif 21 Original Motif Original Motif Backward 1 8 0.009031 Original motif 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.537162 0.000000 0.462838 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: CCACYAGG Reverse complement motif 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.537162 0.462838 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: CCTKGTGG Alignment: CCACYAGG CCACYAGR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 145 grCCACyAGAkG Original Motif Original Motif Forward 3 8 0.015535 Original motif 0.217391 0.215321 0.339545 0.227743 0.296066 0.126294 0.380952 0.196687 0.000000 0.997930 0.002070 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.503106 0.000000 0.496894 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.995859 0.002070 0.000000 0.002070 0.084886 0.060041 0.511387 0.343685 0.064182 0.089027 0.784679 0.062112 Consensus sequence: DDCCACYAGAKG Reverse complement motif 0.064182 0.784679 0.089027 0.062112 0.084886 0.511387 0.060041 0.343685 0.002070 0.002070 0.000000 0.995859 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.503106 0.496894 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.002070 0.997930 0.000000 0.296066 0.380952 0.126294 0.196687 0.217391 0.339545 0.215321 0.227743 Consensus sequence: CYTCTKGTGGHH Alignment: DDCCACYAGAKG --CCACYAGR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 158 grCCACwAGrk Original Motif Original Motif Backward 2 8 0.019265 Original motif 0.240580 0.205797 0.326570 0.227053 0.283092 0.172947 0.363285 0.180676 0.000000 1.000000 0.000000 0.000000 0.000000 0.999034 0.000966 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.457971 0.000000 0.000000 0.542029 0.998068 0.001932 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.390338 0.113043 0.407729 0.088889 0.129469 0.110145 0.402899 0.357488 Consensus sequence: DDCCACWAGRK Reverse complement motif 0.129469 0.402899 0.110145 0.357488 0.390338 0.407729 0.113043 0.088889 0.000000 1.000000 0.000000 0.000000 0.000000 0.001932 0.000000 0.998068 0.542029 0.000000 0.000000 0.457971 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000966 0.999034 0.000000 0.000000 0.000000 1.000000 0.000000 0.283092 0.363285 0.172947 0.180676 0.240580 0.326570 0.205797 0.227053 Consensus sequence: YMCTWGTGGHH Alignment: DDCCACWAGRK --CCACYAGR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 138 grCCACyAGAkG Original Motif Original Motif Forward 3 8 0.024438 Original motif 0.226087 0.207453 0.324224 0.242236 0.304348 0.136646 0.366460 0.192547 0.045963 0.911801 0.011180 0.031056 0.001242 0.993789 0.002484 0.002484 0.988820 0.000000 0.011180 0.000000 0.003727 0.995031 0.001242 0.000000 0.206211 0.300621 0.007453 0.485714 0.998758 0.001242 0.000000 0.000000 0.000000 0.001242 0.992547 0.006211 0.929193 0.012422 0.034783 0.023602 0.106832 0.090683 0.465839 0.336646 0.095652 0.109317 0.713043 0.081988 Consensus sequence: DDCCACYAGAKG Reverse complement motif 0.095652 0.713043 0.109317 0.081988 0.106832 0.465839 0.090683 0.336646 0.023602 0.012422 0.034783 0.929193 0.000000 0.992547 0.001242 0.006211 0.000000 0.001242 0.000000 0.998758 0.485714 0.300621 0.007453 0.206211 0.003727 0.001242 0.995031 0.000000 0.000000 0.000000 0.011180 0.988820 0.001242 0.002484 0.993789 0.002484 0.045963 0.011180 0.911801 0.031056 0.304348 0.366460 0.136646 0.192547 0.226087 0.324224 0.207453 0.242236 Consensus sequence: CYTCTMGTGGHH Alignment: DDCCACYAGAKG --CCACYAGR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 74 CTCF Reverse Complement Reverse Complement Forward 9 8 0.028440 Original motif 0.095290 0.318729 0.083242 0.502738 0.182913 0.158817 0.453450 0.204819 0.307777 0.053669 0.491785 0.146769 0.061336 0.876232 0.023001 0.039430 0.008762 0.989047 0.000000 0.002191 0.814896 0.014239 0.071194 0.099671 0.043812 0.578313 0.365827 0.012048 0.117325 0.474781 0.052632 0.355263 0.933114 0.012061 0.035088 0.019737 0.005488 0.000000 0.991218 0.003293 0.365532 0.003293 0.621295 0.009879 0.059276 0.013172 0.553238 0.374314 0.013187 0.000000 0.978022 0.008791 0.061538 0.008791 0.851648 0.078022 0.114411 0.806381 0.005501 0.073707 0.409241 0.014301 0.557756 0.018702 0.090308 0.530837 0.338106 0.040749 0.128855 0.354626 0.080396 0.436123 0.442731 0.199339 0.292952 0.064978 Consensus sequence: YDRCCASYAGRKGGCRSYV Reverse complement motif 0.064978 0.199339 0.292952 0.442731 0.436123 0.354626 0.080396 0.128855 0.090308 0.338106 0.530837 0.040749 0.409241 0.557756 0.014301 0.018702 0.114411 0.005501 0.806381 0.073707 0.061538 0.851648 0.008791 0.078022 0.013187 0.978022 0.000000 0.008791 0.059276 0.553238 0.013172 0.374314 0.365532 0.621295 0.003293 0.009879 0.005488 0.991218 0.000000 0.003293 0.019737 0.012061 0.035088 0.933114 0.117325 0.052632 0.474781 0.355263 0.043812 0.365827 0.578313 0.012048 0.099671 0.014239 0.071194 0.814896 0.008762 0.000000 0.989047 0.002191 0.061336 0.023001 0.876232 0.039430 0.307777 0.491785 0.053669 0.146769 0.182913 0.453450 0.158817 0.204819 0.502738 0.318729 0.083242 0.095290 Consensus sequence: BMSMGCCYMCTKSTGGMHM Alignment: BMSMGCCYMCTKSTGGMHM --------MCTKGTGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 65 Motif name: Motif 65 Original motif 1.000000 0.000000 0.000000 0.000000 0.483146 0.000000 0.516854 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: ARAACA Reverse complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.483146 0.516854 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 Consensus sequence: TGTTMT *************************************************************** Best Matches for Top Significant Motif ID 65 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 141 raCAAAACam Original Motif Original Motif Forward 4 6 0.001224 Original motif 0.453069 0.095668 0.272563 0.178700 0.532491 0.093863 0.160650 0.212996 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.990975 0.009025 0.000000 0.561372 0.157040 0.108303 0.173285 0.438628 0.303249 0.084838 0.173285 Consensus sequence: DACAAAACAH Reverse complement motif 0.173285 0.303249 0.084838 0.438628 0.173285 0.157040 0.108303 0.561372 0.000000 0.009025 0.990975 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.212996 0.093863 0.160650 0.532491 0.178700 0.095668 0.272563 0.453069 Consensus sequence: HTGTTTTGTD Alignment: DACAAAACAH ---ARAACA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 44 Motif 44 Original Motif Original Motif Backward 1 6 0.010198 Original motif 0.000000 0.000000 1.000000 0.000000 0.336957 0.000000 0.332609 0.330435 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: GDAAACA Reverse complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.330435 0.000000 0.332609 0.336957 0.000000 1.000000 0.000000 0.000000 Consensus sequence: TGTTTDC Alignment: GDAAACA -ARAACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 159 kkAAGAGCAsy Reverse Complement Reverse Complement Forward 3 6 0.023221 Original motif 0.192248 0.136434 0.384496 0.286822 0.179845 0.204651 0.337984 0.277519 1.000000 0.000000 0.000000 0.000000 0.995349 0.004651 0.000000 0.000000 0.000000 0.001550 0.998450 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.995349 0.000000 0.004651 0.000000 0.181395 0.286822 0.423256 0.108527 0.193798 0.316279 0.151938 0.337984 Consensus sequence: DBAAGAGCAVH Reverse complement motif 0.337984 0.316279 0.151938 0.193798 0.181395 0.423256 0.286822 0.108527 0.000000 0.000000 0.004651 0.995349 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.998450 0.001550 0.000000 0.000000 0.004651 0.000000 0.995349 0.000000 0.000000 0.000000 1.000000 0.179845 0.337984 0.204651 0.277519 0.192248 0.384496 0.136434 0.286822 Consensus sequence: HVTGCTCTTBH Alignment: HVTGCTCTTBH --TGTTMT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 121 TAL1TCF3 Original Motif Original Motif Backward 7 6 0.033006 Original motif 0.295455 0.318182 0.181818 0.204545 0.204545 0.227273 0.454545 0.113636 0.886364 0.000000 0.068182 0.045455 0.454545 0.545455 0.000000 0.000000 0.000000 0.977273 0.022727 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.022727 0.250000 0.727273 0.272727 0.727273 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.977273 0.022727 0.000000 0.068182 0.454545 0.477273 0.090909 0.090909 0.045455 0.772727 Consensus sequence: HVAMCATCTGKT Reverse complement motif 0.772727 0.090909 0.045455 0.090909 0.477273 0.068182 0.454545 0.000000 0.000000 0.977273 0.000000 0.022727 1.000000 0.000000 0.000000 0.000000 0.272727 0.000000 0.727273 0.000000 0.727273 0.022727 0.250000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.022727 0.977273 0.000000 0.454545 0.000000 0.545455 0.000000 0.045455 0.000000 0.068182 0.886364 0.204545 0.454545 0.227273 0.113636 0.295455 0.181818 0.318182 0.204545 Consensus sequence: ARCAGATGRTVD Alignment: HVAMCATCTGKT ARAACA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Original Motif Original Motif Backward 3 6 0.033307 Original motif 0.523091 0.000000 0.242798 0.234111 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.251943 0.259259 0.238683 0.250114 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 Consensus sequence: AAAAHAAA Reverse complement motif 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.251943 0.238683 0.259259 0.250114 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.234111 0.000000 0.242798 0.523091 Consensus sequence: TTTDTTTT Alignment: AAAAHAAA ARAACA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 5 Motif name: Motif 5 Original motif 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.371462 0.000000 0.290094 0.338443 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: CCCCDCCC Reverse complement motif 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.338443 0.000000 0.290094 0.371462 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: GGGDGGGG *************************************************************** Best Matches for Top Significant Motif ID 5 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 59 Motif 59 Original Motif Original Motif Forward 1 8 0.003632 Original motif 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.567797 0.000000 0.432203 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: CCCCRCCC Reverse complement motif 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.432203 0.567797 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: GGGKGGGG Alignment: CCCCRCCC CCCCDCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 155 csCSCCdCCCcs Reverse Complement Reverse Complement Forward 3 8 0.004640 Original motif 0.207704 0.385952 0.242447 0.163897 0.123867 0.327795 0.339124 0.209215 0.000000 1.000000 0.000000 0.000000 0.000000 0.745468 0.254532 0.000000 0.000755 0.988671 0.010574 0.000000 0.001511 0.973565 0.024924 0.000000 0.331571 0.000000 0.316465 0.351964 0.000000 0.999245 0.000000 0.000755 0.000000 0.978097 0.021903 0.000000 0.001511 0.984139 0.014350 0.000000 0.180514 0.489426 0.161631 0.168429 0.163142 0.437311 0.256042 0.143505 Consensus sequence: VBCCCCDCCCHV Reverse complement motif 0.163142 0.256042 0.437311 0.143505 0.180514 0.161631 0.489426 0.168429 0.001511 0.014350 0.984139 0.000000 0.000000 0.021903 0.978097 0.000000 0.000000 0.000000 0.999245 0.000755 0.351964 0.000000 0.316465 0.331571 0.001511 0.024924 0.973565 0.000000 0.000755 0.010574 0.988671 0.000000 0.000000 0.254532 0.745468 0.000000 0.000000 0.000000 1.000000 0.000000 0.123867 0.339124 0.327795 0.209215 0.207704 0.242447 0.385952 0.163897 Consensus sequence: VDGGGDGGGGBV Alignment: VDGGGDGGGGBV --GGGDGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 89 Klf4 Original Motif Reverse Complement Backward 2 8 0.035259 Original motif 0.338561 0.018681 0.235701 0.407057 0.020276 0.002074 0.976267 0.001382 0.003223 0.002993 0.990792 0.002993 0.003221 0.008282 0.984817 0.003681 0.063693 0.441941 0.002529 0.491837 0.005064 0.003453 0.983656 0.007827 0.009671 0.018420 0.501727 0.470182 0.060872 0.010606 0.899700 0.028822 0.028400 0.030016 0.874856 0.066728 0.058742 0.660962 0.064755 0.215541 Consensus sequence: DGGGYGKGGC Reverse complement motif 0.058742 0.064755 0.660962 0.215541 0.028400 0.874856 0.030016 0.066728 0.060872 0.899700 0.010606 0.028822 0.009671 0.501727 0.018420 0.470182 0.005064 0.983656 0.003453 0.007827 0.491837 0.441941 0.002529 0.063693 0.003221 0.984817 0.008282 0.003681 0.003223 0.990792 0.002993 0.002993 0.020276 0.976267 0.002074 0.001382 0.407057 0.018681 0.235701 0.338561 Consensus sequence: GCCYCMCCCD Alignment: GCCYCMCCCD -CCCCDCCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 154 csCsCCTCCcc Reverse Complement Reverse Complement Forward 2 8 0.036135 Original motif 0.216571 0.337982 0.246924 0.198523 0.148482 0.333060 0.283839 0.234619 0.000000 1.000000 0.000000 0.000000 0.000000 0.679245 0.320755 0.000000 0.000000 0.999180 0.000820 0.000000 0.000000 0.998359 0.001641 0.000000 0.198523 0.000000 0.001641 0.799836 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.178015 0.406071 0.173093 0.242822 0.170632 0.394586 0.243642 0.191140 Consensus sequence: VBCCCCTCCHB Reverse complement motif 0.170632 0.243642 0.394586 0.191140 0.178015 0.173093 0.406071 0.242822 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.799836 0.000000 0.001641 0.198523 0.000000 0.001641 0.998359 0.000000 0.000000 0.000820 0.999180 0.000000 0.000000 0.320755 0.679245 0.000000 0.000000 0.000000 1.000000 0.000000 0.148482 0.283839 0.333060 0.234619 0.216571 0.246924 0.337982 0.198523 Consensus sequence: BDGGAGGGGBV Alignment: BDGGAGGGGBV -GGGDGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 116 SP1 Original Motif Original Motif Backward 3 8 0.036807 Original motif 0.000000 0.914286 0.028571 0.057143 0.000000 0.857143 0.028571 0.114286 0.000000 1.000000 0.000000 0.000000 0.114286 0.771429 0.000000 0.114286 0.057143 0.142857 0.428571 0.371429 0.000000 0.800000 0.028571 0.171429 0.028571 0.885714 0.000000 0.085714 0.000000 0.685714 0.085714 0.228571 0.171429 0.714286 0.000000 0.114286 0.085714 0.742857 0.085714 0.085714 Consensus sequence: CCCCKCCCCC Reverse complement motif 0.085714 0.085714 0.742857 0.085714 0.171429 0.000000 0.714286 0.114286 0.000000 0.085714 0.685714 0.228571 0.028571 0.000000 0.885714 0.085714 0.000000 0.028571 0.800000 0.171429 0.057143 0.428571 0.142857 0.371429 0.114286 0.000000 0.771429 0.114286 0.000000 0.000000 1.000000 0.000000 0.000000 0.028571 0.857143 0.114286 0.000000 0.028571 0.914286 0.057143 Consensus sequence: GGGGGYGGGG Alignment: CCCCKCCCCC CCCCDCCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 72 Motif name: ArntAhr Original motif 0.125000 0.333333 0.083333 0.458333 0.000000 0.000000 0.958333 0.041667 0.000000 0.958333 0.000000 0.041667 0.000000 0.000000 0.958333 0.041667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: YGCGTG Reverse complement motif 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.958333 0.000000 0.041667 0.000000 0.000000 0.958333 0.041667 0.000000 0.958333 0.000000 0.041667 0.458333 0.333333 0.083333 0.125000 Consensus sequence: CACGCM *************************************************************** Best Matches for Top Significant Motif ID 72 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 134 ssCGwGCGss Original Motif Original Motif Backward 5 6 0.012895 Original motif 0.143875 0.390313 0.266382 0.199430 0.115385 0.262108 0.507123 0.115385 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.488604 0.105413 0.000000 0.405983 0.002849 0.002849 0.991453 0.002849 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.118234 0.455840 0.252137 0.173789 0.160969 0.290598 0.408832 0.139601 Consensus sequence: BSCGWGCGBV Reverse complement motif 0.160969 0.408832 0.290598 0.139601 0.118234 0.252137 0.455840 0.173789 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.002849 0.991453 0.002849 0.002849 0.405983 0.105413 0.000000 0.488604 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.115385 0.507123 0.262108 0.115385 0.143875 0.266382 0.390313 0.199430 Consensus sequence: VBCGCWCGSB Alignment: BSCGWGCGBV YGCGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 20 Motif 20 Original Motif Reverse Complement Forward 1 6 0.020643 Original motif 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.376368 0.000000 0.623632 0.000000 Consensus sequence: CACGTR Reverse complement motif 0.376368 0.623632 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: MACGTG Alignment: MACGTG YGCGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 42 Motif 42 Original Motif Reverse Complement Backward 2 6 0.025908 Original motif 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.503125 0.496875 0.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: CGCGCSG Reverse complement motif 0.000000 1.000000 0.000000 0.000000 0.000000 0.496875 0.503125 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 Consensus sequence: CSGCGCG Alignment: CSGCGCG YGCGTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 152 yrCATGCAyr Reverse Complement Original Motif Forward 3 6 0.027929 Original motif 0.120482 0.265060 0.149398 0.465060 0.518072 0.057831 0.296386 0.127711 0.000000 1.000000 0.000000 0.000000 0.826506 0.173494 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.108434 0.281928 0.221687 0.387952 0.293976 0.125301 0.402410 0.178313 Consensus sequence: BRCATGCABD Reverse complement motif 0.293976 0.402410 0.125301 0.178313 0.387952 0.281928 0.221687 0.108434 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.173494 0.000000 0.826506 0.000000 0.000000 1.000000 0.000000 0.127711 0.057831 0.296386 0.518072 0.465060 0.265060 0.149398 0.120482 Consensus sequence: HVTGCATGKV Alignment: BRCATGCABD --CACGCM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 57 Motif 57 Reverse Complement Original Motif Forward 2 6 0.031517 Original motif 1.000000 0.000000 0.000000 0.000000 0.000000 0.740385 0.000000 0.259615 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.644231 0.000000 0.355769 Consensus sequence: ACACACAY Reverse complement motif 0.000000 0.000000 0.644231 0.355769 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.740385 0.259615 0.000000 0.000000 0.000000 1.000000 Consensus sequence: KTGTGTGT Alignment: ACACACAY -CACGCM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 101 Motif name: NFIC Original motif 0.051794 0.265046 0.025463 0.657697 0.011719 0.009693 0.043403 0.935185 0.011719 0.009693 0.971209 0.007378 0.013166 0.012731 0.961082 0.013021 0.177373 0.776042 0.023148 0.023438 0.477141 0.141927 0.171586 0.209346 Consensus sequence: TTGGCD Reverse complement motif 0.209346 0.141927 0.171586 0.477141 0.177373 0.023148 0.776042 0.023438 0.013166 0.961082 0.012731 0.013021 0.011719 0.971209 0.009693 0.007378 0.935185 0.009693 0.043403 0.011719 0.657697 0.265046 0.025463 0.051794 Consensus sequence: DGCCAA *************************************************************** Best Matches for Top Significant Motif ID 101 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 165 wgGCCAshAGrGGGCrsy Reverse Complement Original Motif Backward 12 6 0.021538 Original motif 0.300077 0.238206 0.115236 0.346481 0.192575 0.119876 0.495746 0.191802 0.150039 0.032483 0.726218 0.091261 0.034029 0.932715 0.010828 0.022428 0.000000 0.998453 0.001547 0.000000 0.876257 0.002320 0.028616 0.092807 0.015468 0.650425 0.324826 0.009281 0.370456 0.312452 0.003867 0.313225 0.981439 0.006961 0.008507 0.003094 0.000000 0.000000 1.000000 0.000000 0.655839 0.000773 0.333333 0.010054 0.003094 0.003867 0.757154 0.235886 0.003094 0.000000 0.996906 0.000000 0.007734 0.001547 0.981439 0.009281 0.013921 0.976798 0.002320 0.006961 0.576179 0.005414 0.409899 0.008507 0.080433 0.429234 0.314772 0.175561 0.119876 0.426141 0.108275 0.345708 Consensus sequence: HDGCCACHAGRGGGCRBY Reverse complement motif 0.119876 0.108275 0.426141 0.345708 0.080433 0.314772 0.429234 0.175561 0.008507 0.005414 0.409899 0.576179 0.013921 0.002320 0.976798 0.006961 0.007734 0.981439 0.001547 0.009281 0.003094 0.996906 0.000000 0.000000 0.003094 0.757154 0.003867 0.235886 0.010054 0.000773 0.333333 0.655839 0.000000 1.000000 0.000000 0.000000 0.003094 0.006961 0.008507 0.981439 0.313225 0.312452 0.003867 0.370456 0.015468 0.324826 0.650425 0.009281 0.092807 0.002320 0.028616 0.876257 0.000000 0.001547 0.998453 0.000000 0.034029 0.010828 0.932715 0.022428 0.150039 0.726218 0.032483 0.091261 0.192575 0.495746 0.119876 0.191802 0.346481 0.238206 0.115236 0.300077 Consensus sequence: KBKGCCCKCTHGTGGCHH Alignment: HDGCCACHAGRGGGCRBY -DGCCAA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 156 rgyGCCMyCTksTGGccd Reverse Complement Reverse Complement Backward 12 6 0.026631 Original motif 0.353158 0.104657 0.420009 0.122176 0.180728 0.245735 0.491471 0.082065 0.010143 0.593361 0.009221 0.387275 0.035039 0.003688 0.852467 0.108806 0.012448 0.976487 0.003227 0.007838 0.001844 0.990779 0.003688 0.003688 0.251729 0.729368 0.010143 0.008760 0.001844 0.426925 0.001844 0.569387 0.001383 0.994929 0.001844 0.001844 0.011526 0.016136 0.018903 0.953435 0.131858 0.039189 0.426003 0.402951 0.009221 0.557400 0.414477 0.018903 0.047948 0.054864 0.009682 0.887506 0.001844 0.005533 0.988474 0.004149 0.028124 0.024896 0.908714 0.038266 0.112494 0.635777 0.052098 0.199631 0.185800 0.470724 0.152144 0.191332 0.314431 0.126787 0.260028 0.298755 Consensus sequence: RVYGCCCYCTKSTGGCHD Reverse complement motif 0.298755 0.126787 0.260028 0.314431 0.185800 0.152144 0.470724 0.191332 0.112494 0.052098 0.635777 0.199631 0.028124 0.908714 0.024896 0.038266 0.001844 0.988474 0.005533 0.004149 0.887506 0.054864 0.009682 0.047948 0.009221 0.414477 0.557400 0.018903 0.131858 0.426003 0.039189 0.402951 0.953435 0.016136 0.018903 0.011526 0.001383 0.001844 0.994929 0.001844 0.569387 0.426925 0.001844 0.001844 0.251729 0.010143 0.729368 0.008760 0.001844 0.003688 0.990779 0.003688 0.012448 0.003227 0.976487 0.007838 0.035039 0.852467 0.003688 0.108806 0.010143 0.009221 0.593361 0.387275 0.180728 0.491471 0.245735 0.082065 0.353158 0.420009 0.104657 0.122176 Consensus sequence: DDGCCASYAGMGGGCKVM Alignment: DDGCCASYAGMGGGCKVM -DGCCAA----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 151 agrCCAGmAGrg Original Motif Reverse Complement Backward 2 6 0.027363 Original motif 0.400958 0.190895 0.174121 0.234026 0.204473 0.163738 0.484026 0.147764 0.332268 0.000000 0.667732 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.480831 0.519169 0.000000 0.000000 0.920128 0.000000 0.079872 0.000000 0.000000 0.000000 1.000000 0.000000 0.504792 0.138978 0.277955 0.078275 0.110224 0.119808 0.594249 0.175719 Consensus sequence: HVGCCAGMAGRG Reverse complement motif 0.110224 0.594249 0.119808 0.175719 0.078275 0.138978 0.277955 0.504792 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.079872 0.920128 0.480831 0.000000 0.519169 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.332268 0.667732 0.000000 0.000000 0.204473 0.484026 0.163738 0.147764 0.234026 0.190895 0.174121 0.400958 Consensus sequence: CKCTRCTGGCVH Alignment: CKCTRCTGGCVH -----TTGGCD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 Motif 9 Reverse Complement Reverse Complement Forward 2 6 0.028051 Original motif 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.329531 0.000000 0.202788 0.467681 0.000000 0.509506 0.490494 0.000000 Consensus sequence: GGTGGCWS Reverse complement motif 0.000000 0.490494 0.509506 0.000000 0.467681 0.000000 0.202788 0.329531 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Consensus sequence: SWGCCACC Alignment: SWGCCACC -DGCCAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 163 gwGGCCAGmAGAGGGCrby Original Motif Reverse Complement Forward 12 6 0.028086 Original motif 0.199480 0.184735 0.461405 0.154380 0.420642 0.165655 0.100607 0.313096 0.106678 0.074588 0.701648 0.117086 0.140503 0.034692 0.753686 0.071119 0.034692 0.925412 0.013877 0.026019 0.001735 0.995663 0.002602 0.000000 0.937554 0.003469 0.023417 0.035559 0.019948 0.183868 0.783174 0.013010 0.458803 0.355594 0.026886 0.158716 0.990460 0.003469 0.005204 0.000867 0.000000 0.000000 1.000000 0.000000 0.758023 0.002602 0.238508 0.000867 0.001735 0.005204 0.851691 0.141370 0.001735 0.000867 0.996531 0.000867 0.006071 0.001735 0.983521 0.008673 0.023417 0.947095 0.002602 0.026886 0.562879 0.011275 0.421509 0.004337 0.063313 0.427580 0.257589 0.251518 0.101474 0.471813 0.091934 0.334779 Consensus sequence: VHGGCCAGMAGAGGGCRBY Reverse complement motif 0.101474 0.091934 0.471813 0.334779 0.063313 0.257589 0.427580 0.251518 0.004337 0.011275 0.421509 0.562879 0.023417 0.002602 0.947095 0.026886 0.006071 0.983521 0.001735 0.008673 0.001735 0.996531 0.000867 0.000867 0.001735 0.851691 0.005204 0.141370 0.000867 0.002602 0.238508 0.758023 0.000000 1.000000 0.000000 0.000000 0.000867 0.003469 0.005204 0.990460 0.158716 0.355594 0.026886 0.458803 0.019948 0.783174 0.183868 0.013010 0.035559 0.003469 0.023417 0.937554 0.001735 0.002602 0.995663 0.000000 0.034692 0.013877 0.925412 0.026019 0.140503 0.753686 0.034692 0.071119 0.106678 0.701648 0.074588 0.117086 0.313096 0.165655 0.100607 0.420642 0.199480 0.461405 0.184735 0.154380 Consensus sequence: KBKGCCCTCTYCTGGCCHV Alignment: KBKGCCCTCTYCTGGCCHV -----------TTGGCD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-18-2018 16:50:38 Runtime: 1017.733784 seconds MOTIFSIM is written by Ngoc Tam L. 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