MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.2

INPUT

Input Parameters
Number of files: 5
Number of top significant motifs: 10
Number of best matches: 10
Similarity cutoff >= 0.75
Matching motif database: UniProbe Mus Musculus
Motif tree: Yes
Combined similar motifs: Yes
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
DREME_DM230.txt 1 1
MEME_DM230.txt 20 2
PScanChIP_DM230.txt 14 3
RSAT_peak-motifs_DM230.txt 10 4
PScanChIP_DM230.txt 14 5

RESULTS

Top 10 Significant Motifs - Global Matching (Highest to Lowest)

Dataset #: 4 Motif ID: 45 Motif name: wbgTAAATAww

Original motif     Consensus sequence: DBGTAAATAHD Reverse complement motif     Consensus sequence: DHTATTTACBD

Best Matches for Top Significant Motif ID 45 (Highest to Lowest)

Dataset #: 2
Motif ID: 9
Motif name: Motif 9
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0177412

Alignment:
AATHATATWTHAAA
DHTATTTACBD---

Original motif     Consensus sequence: AATHATATWTHAAA Reverse complement motif     Consensus sequence: TTTDAWATATHATT


Dataset #: 2
Motif ID: 6
Motif name: Motif 6
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0205821

Alignment:
AATTYDGAARTAWW
---DBGTAAATAHD

Original motif     Consensus sequence: AATTYDGAARTAWW Reverse complement motif     Consensus sequence: WWTAKTTCDKAATT


Dataset #: 2
Motif ID: 4
Motif name: Motif 4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0288058

Alignment:
AWGKAAWTTTT
DBGTAAATAHD

Original motif     Consensus sequence: AAAAWTTRCWT Reverse complement motif     Consensus sequence: AWGKAAWTTTT


Dataset #: 2
Motif ID: 3
Motif name: Motif 3
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0337252

Alignment:
AWAAAWTWAAASWA
--DHTATTTACBD-

Original motif     Consensus sequence: AWAAAWTWAAASWA Reverse complement motif     Consensus sequence: TWSTTTWAWTTTWT


Dataset #: 2
Motif ID: 5
Motif name: Motif 5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0404685

Alignment:
AWTAAATAYAATTT
---DHTATTTACBD

Original motif     Consensus sequence: AWTAAATAYAATTT Reverse complement motif     Consensus sequence: AAATTKTATTTAWT


Dataset #: 5
Motif ID: 55
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 11
Similarity score: 0.0439858

Alignment:
DGVBCABTGDWGCGKRRCSR
DBGTAAATAHD---------

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 3
Motif ID: 31
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0439858

Alignment:
DGVBCABTGDWGCGKRRCSR
DBGTAAATAHD---------

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 5
Motif ID: 59
Motif name: GABPA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0439962

Alignment:
CCGGAAGTGVV
DBGTAAATAHD

Original motif     Consensus sequence: CCGGAAGTGVV Reverse complement motif     Consensus sequence: VVCACTTCCGG


Dataset #: 3
Motif ID: 35
Motif name: GABPA
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0439962

Alignment:
CCGGAAGTGVV
DBGTAAATAHD

Original motif     Consensus sequence: CCGGAAGTGVV Reverse complement motif     Consensus sequence: VVCACTTCCGG


Dataset #: 2
Motif ID: 19
Motif name: Motif 19
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0477737

Alignment:
TWTAATCTAWGAA
-DHTATTTACBD-

Original motif     Consensus sequence: TTCWTAGATTAWA Reverse complement motif     Consensus sequence: TWTAATCTAWGAA


Dataset #: 1 Motif ID: 1 Motif name: Motif 1

Original motif     Consensus sequence: GGCGGGGC Reverse complement motif     Consensus sequence: GCCCCGCC

Best Matches for Top Significant Motif ID 1 (Highest to Lowest)

Dataset #: 4
Motif ID: 36
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0

Alignment:
HVGCCCCGCCCCBB
--GCCCCGCC----

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 4
Motif ID: 38
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.00250079

Alignment:
BCCGCCCCGCCCCBB
---GCCCCGCC----

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 2
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0149958

Alignment:
MSGGGGCGGGGYSG
----GGCGGGGC--

Original motif     Consensus sequence: CSKCCCCGCCCCSY Reverse complement motif     Consensus sequence: MSGGGGCGGGGYSG


Dataset #: 5
Motif ID: 51
Motif name: Klf4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0349983

Alignment:
DGGGYGKGGC
--GGCGGGGC

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 3
Motif ID: 27
Motif name: Klf4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0349983

Alignment:
DGGGYGKGGC
--GGCGGGGC

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 3
Motif ID: 22
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0708224

Alignment:
VAGGCCBBGGCVBB
---GCCCCGCC---

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 5
Motif ID: 46
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0708224

Alignment:
VAGGCCBBGGCVBB
---GCCCCGCC---

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 5
Motif ID: 55
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0853847

Alignment:
DGVBCABTGDWGCGKRRCSR
----------GGCGGGGC--

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 3
Motif ID: 31
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0853847

Alignment:
DGVBCABTGDWGCGKRRCSR
----------GGCGGGGC--

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 3
Motif ID: 23
Motif name: Egr1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0878731

Alignment:
HGCGTGGGCGK
GGCGGGGC---

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 5
Motif ID: 47
Motif name: Egr1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0878731

Alignment:
HGCGTGGGCGK
GGCGGGGC---

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 3 Motif ID: 32 Motif name: ArntAhr

Original motif     Consensus sequence: YGCGTG Reverse complement motif     Consensus sequence: CACGCM

Best Matches for Top Significant Motif ID 32 (Highest to Lowest)

Dataset #: 5
Motif ID: 56
Motif name: ArntAhr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0

Alignment:
YGCGTG
YGCGTG

Original motif     Consensus sequence: YGCGTG Reverse complement motif     Consensus sequence: CACGCM


Dataset #: 5
Motif ID: 47
Motif name: Egr1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0.0340278

Alignment:
HGCGTGGGCGK
YGCGTG-----

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 5
Motif ID: 53
Motif name: HIF1AARNT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0452724

Alignment:
VBACGTGV
-YGCGTG-

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV


Dataset #: 5
Motif ID: 57
Motif name: Mycn
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0718227

Alignment:
GCCACGTGSD
--YGCGTG--

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD


Dataset #: 4
Motif ID: 36
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0736681

Alignment:
HVGCCCCGCCCCBB
----CACGCM----

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 5
Motif ID: 58
Motif name: Myc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0739492

Alignment:
DCCACGTGCV
--YGCGTG--

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV


Dataset #: 1
Motif ID: 1
Motif name: Motif 1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0746528

Alignment:
GCCCCGCC
--CACGCM

Original motif     Consensus sequence: GGCGGGGC Reverse complement motif     Consensus sequence: GCCCCGCC


Dataset #: 4
Motif ID: 42
Motif name: sSGTCACGTGACSs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0752315

Alignment:
SGGTCACGTGACCS
----YGCGTG----

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 4
Motif ID: 38
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0765366

Alignment:
BCCGCCCCGCCCCBB
-----CACGCM----

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 2
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0806145

Alignment:
MSGGGGCGGGGYSG
----YGCGTG----

Original motif     Consensus sequence: CSKCCCCGCCCCSY Reverse complement motif     Consensus sequence: MSGGGGCGGGGYSG


Dataset #: 5 Motif ID: 56 Motif name: ArntAhr

Original motif     Consensus sequence: YGCGTG Reverse complement motif     Consensus sequence: CACGCM

Best Matches for Top Significant Motif ID 56 (Highest to Lowest)

Dataset #: 3
Motif ID: 32
Motif name: ArntAhr
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 6
Similarity score: 0

Alignment:
YGCGTG
YGCGTG

Original motif     Consensus sequence: YGCGTG Reverse complement motif     Consensus sequence: CACGCM


Dataset #: 3
Motif ID: 23
Motif name: Egr1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 6
Similarity score: 0.0340278

Alignment:
YCGCCCACGCH
-----CACGCM

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 3
Motif ID: 29
Motif name: HIF1AARNT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 6
Similarity score: 0.0452724

Alignment:
VBACGTGV
-YGCGTG-

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV


Dataset #: 3
Motif ID: 33
Motif name: Mycn
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0718227

Alignment:
HSCACGTGGC
--CACGCM--

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD


Dataset #: 4
Motif ID: 36
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0736681

Alignment:
BBGGGGCGGGGCVD
----YGCGTG----

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 3
Motif ID: 34
Motif name: Myc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0739492

Alignment:
VGCACGTGGH
--CACGCM--

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV


Dataset #: 1
Motif ID: 1
Motif name: Motif 1
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 6
Similarity score: 0.0746528

Alignment:
GCCCCGCC
--CACGCM

Original motif     Consensus sequence: GGCGGGGC Reverse complement motif     Consensus sequence: GCCCCGCC


Dataset #: 4
Motif ID: 42
Motif name: sSGTCACGTGACSs
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0752315

Alignment:
SGGTCACGTGACCS
----YGCGTG----

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 4
Motif ID: 38
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0765366

Alignment:
BBGGGGCGGGGCGGB
-----YGCGTG----

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 2
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0806145

Alignment:
MSGGGGCGGGGYSG
----YGCGTG----

Original motif     Consensus sequence: CSKCCCCGCCCCSY Reverse complement motif     Consensus sequence: MSGGGGCGGGGYSG


Dataset #: 3 Motif ID: 24 Motif name: SP1

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG

Best Matches for Top Significant Motif ID 24 (Highest to Lowest)

Dataset #: 5
Motif ID: 48
Motif name: SP1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0

Alignment:
CCCCKCCCCC
CCCCKCCCCC

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG


Dataset #: 2
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.043504

Alignment:
CSKCCCCGCCCCSY
---CCCCKCCCCC-

Original motif     Consensus sequence: CSKCCCCGCCCCSY Reverse complement motif     Consensus sequence: MSGGGGCGGGGYSG


Dataset #: 4
Motif ID: 36
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0486461

Alignment:
BBGGGGCGGGGCVD
-GGGGGYGGGG---

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 4
Motif ID: 38
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0517173

Alignment:
BCCGCCCCGCCCCBB
----CCCCKCCCCC-

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 5
Motif ID: 46
Motif name: Zfx
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0930706

Alignment:
VAGGCCBBGGCVBB
----CCCCKCCCCC

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 5
Motif ID: 54
Motif name: PLAG1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0990873

Alignment:
CCCCCTTGGGCCCC
-CCCCKCCCCC---

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC


Dataset #: 5
Motif ID: 51
Motif name: Klf4
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.102706

Alignment:
GCCYCMCCCD
CCCCKCCCCC

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 2
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.103809

Alignment:
MTMMTCMMTCTKCK
----CCCCKCCCCC

Original motif     Consensus sequence: RGRAGARRGARRAR Reverse complement motif     Consensus sequence: MTMMTCMMTCTKCK


Dataset #: 5
Motif ID: 47
Motif name: Egr1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.106429

Alignment:
HGCGTGGGCGK
GGGGGYGGGG-

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 5
Motif ID: 55
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 10
Similarity score: 0.11125

Alignment:
DGVBCABTGDWGCGKRRCSR
-------GGGGGYGGGG---

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 5 Motif ID: 48 Motif name: SP1

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG

Best Matches for Top Significant Motif ID 48 (Highest to Lowest)

Dataset #: 3
Motif ID: 24
Motif name: SP1
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0

Alignment:
CCCCKCCCCC
CCCCKCCCCC

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG


Dataset #: 2
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.043504

Alignment:
CSKCCCCGCCCCSY
---CCCCKCCCCC-

Original motif     Consensus sequence: CSKCCCCGCCCCSY Reverse complement motif     Consensus sequence: MSGGGGCGGGGYSG


Dataset #: 4
Motif ID: 36
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0486461

Alignment:
BBGGGGCGGGGCVD
-GGGGGYGGGG---

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 4
Motif ID: 38
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0517173

Alignment:
BCCGCCCCGCCCCBB
----CCCCKCCCCC-

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 3
Motif ID: 22
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0930706

Alignment:
BBVGCCBVGGCCTV
----GGGGGYGGGG

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 3
Motif ID: 30
Motif name: PLAG1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0990873

Alignment:
GGGGCCCAAGGGGG
-GGGGGYGGGG---

Original motif     Consensus sequence: GGGGCCCAAGGGGG Reverse complement motif     Consensus sequence: CCCCCTTGGGCCCC


Dataset #: 3
Motif ID: 27
Motif name: Klf4
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.102706

Alignment:
DGGGYGKGGC
GGGGGYGGGG

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 2
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.103809

Alignment:
MTMMTCMMTCTKCK
----CCCCKCCCCC

Original motif     Consensus sequence: RGRAGARRGARRAR Reverse complement motif     Consensus sequence: MTMMTCMMTCTKCK


Dataset #: 3
Motif ID: 23
Motif name: Egr1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.106429

Alignment:
YCGCCCACGCH
CCCCKCCCCC-

Original motif     Consensus sequence: HGCGTGGGCGK Reverse complement motif     Consensus sequence: YCGCCCACGCH


Dataset #: 3
Motif ID: 31
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 10
Similarity score: 0.11125

Alignment:
MSGKKRCGCWDCABTGBBCD
-------CCCCKCCCCC---

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 5 Motif ID: 53 Motif name: HIF1AARNT

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV

Best Matches for Top Significant Motif ID 53 (Highest to Lowest)

Dataset #: 3
Motif ID: 29
Motif name: HIF1AARNT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0

Alignment:
VBACGTGV
VBACGTGV

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV


Dataset #: 3
Motif ID: 33
Motif name: Mycn
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0575825

Alignment:
GCCACGTGSD
-VBACGTGV-

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD


Dataset #: 3
Motif ID: 34
Motif name: Myc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0597215

Alignment:
DCCACGTGCV
-VBACGTGV-

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV


Dataset #: 4
Motif ID: 40
Motif name: kcACCTGCAgc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0748197

Alignment:
GBTGCAGGTGB
---VCACGTBV

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 4
Motif ID: 42
Motif name: sSGTCACGTGACSs
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0767561

Alignment:
SGGTCACGTGACCS
---VBACGTGV---

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 3
Motif ID: 26
Motif name: MIZF
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0829928

Alignment:
GCGGACGTTV
--VCACGTBV

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV


Dataset #: 3
Motif ID: 31
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.100962

Alignment:
MSGKKRCGCWDCABTGBBCD
-----VCACGTBV-------

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 4
Motif ID: 44
Motif name: dhACATTCTkh
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.109275

Alignment:
HCAGAATGTHD
VBACGTGV---

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 3
Motif ID: 35
Motif name: GABPA
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.110088

Alignment:
VVCACTTCCGG
--VBACGTGV-

Original motif     Consensus sequence: CCGGAAGTGVV Reverse complement motif     Consensus sequence: VVCACTTCCGG


Dataset #: 4
Motif ID: 36
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.116389

Alignment:
HVGCCCCGCCCCBB
---VCACGTBV---

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 3 Motif ID: 29 Motif name: HIF1AARNT

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV

Best Matches for Top Significant Motif ID 29 (Highest to Lowest)

Dataset #: 5
Motif ID: 53
Motif name: HIF1AARNT
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0

Alignment:
VBACGTGV
VBACGTGV

Original motif     Consensus sequence: VBACGTGV Reverse complement motif     Consensus sequence: VCACGTBV


Dataset #: 5
Motif ID: 57
Motif name: Mycn
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0575825

Alignment:
GCCACGTGSD
-VBACGTGV-

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD


Dataset #: 5
Motif ID: 58
Motif name: Myc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0597215

Alignment:
DCCACGTGCV
-VBACGTGV-

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV


Dataset #: 4
Motif ID: 40
Motif name: kcACCTGCAgc
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0748197

Alignment:
GBTGCAGGTGB
---VCACGTBV

Original motif     Consensus sequence: BCACCTGCABC Reverse complement motif     Consensus sequence: GBTGCAGGTGB


Dataset #: 4
Motif ID: 42
Motif name: sSGTCACGTGACSs
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0767561

Alignment:
SGGTCACGTGACCS
---VCACGTBV---

Original motif     Consensus sequence: SGGTCACGTGACCS Reverse complement motif     Consensus sequence: SGGTCACGTGACCS


Dataset #: 5
Motif ID: 50
Motif name: MIZF
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0829928

Alignment:
GCGGACGTTV
--VCACGTBV

Original motif     Consensus sequence: BAACGTCCGC Reverse complement motif     Consensus sequence: GCGGACGTTV


Dataset #: 5
Motif ID: 55
Motif name: Pax5
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.100962

Alignment:
MSGKKRCGCWDCABTGBBCD
-----VCACGTBV-------

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 4
Motif ID: 44
Motif name: dhACATTCTkh
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.109275

Alignment:
DHACATTCTGH
VCACGTBV---

Original motif     Consensus sequence: DHACATTCTGH Reverse complement motif     Consensus sequence: HCAGAATGTHD


Dataset #: 5
Motif ID: 59
Motif name: GABPA
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.110088

Alignment:
CCGGAAGTGVV
--VCACGTBV-

Original motif     Consensus sequence: CCGGAAGTGVV Reverse complement motif     Consensus sequence: VVCACTTCCGG


Dataset #: 4
Motif ID: 36
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.116389

Alignment:
BBGGGGCGGGGCVD
---VBACGTGV---

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 5 Motif ID: 51 Motif name: Klf4

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD

Best Matches for Top Significant Motif ID 51 (Highest to Lowest)

Dataset #: 3
Motif ID: 27
Motif name: Klf4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0

Alignment:
DGGGYGKGGC
DGGGYGKGGC

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 2
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0516385

Alignment:
CSKCCCCGCCCCSY
--GCCYCMCCCD--

Original motif     Consensus sequence: CSKCCCCGCCCCSY Reverse complement motif     Consensus sequence: MSGGGGCGGGGYSG


Dataset #: 4
Motif ID: 36
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0524114

Alignment:
HVGCCCCGCCCCBB
--GCCYCMCCCD--

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 4
Motif ID: 38
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0558821

Alignment:
BCCGCCCCGCCCCBB
--GCCYCMCCCD---

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 3
Motif ID: 22
Motif name: Zfx
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0987519

Alignment:
BBVGCCBVGGCCTV
-GCCYCMCCCD---

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 3
Motif ID: 24
Motif name: SP1
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.102706

Alignment:
GGGGGYGGGG
DGGGYGKGGC

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG


Dataset #: 3
Motif ID: 34
Motif name: Myc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.105078

Alignment:
VGCACGTGGH
DGGGYGKGGC

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV


Dataset #: 3
Motif ID: 31
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 10
Similarity score: 0.105953

Alignment:
DGVBCABTGDWGCGKRRCSR
--------DGGGYGKGGC--

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 3
Motif ID: 33
Motif name: Mycn
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.10603

Alignment:
HSCACGTGGC
DGGGYGKGGC

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD


Dataset #: 2
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.110488

Alignment:
MTMMTCMMTCTKCK
-GCCYCMCCCD---

Original motif     Consensus sequence: RGRAGARRGARRAR Reverse complement motif     Consensus sequence: MTMMTCMMTCTKCK


Dataset #: 3 Motif ID: 27 Motif name: Klf4

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD

Best Matches for Top Significant Motif ID 27 (Highest to Lowest)

Dataset #: 5
Motif ID: 51
Motif name: Klf4
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0

Alignment:
DGGGYGKGGC
DGGGYGKGGC

Original motif     Consensus sequence: DGGGYGKGGC Reverse complement motif     Consensus sequence: GCCYCMCCCD


Dataset #: 2
Motif ID: 7
Motif name: Motif 7
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0516385

Alignment:
CSKCCCCGCCCCSY
--GCCYCMCCCD--

Original motif     Consensus sequence: CSKCCCCGCCCCSY Reverse complement motif     Consensus sequence: MSGGGGCGGGGYSG


Dataset #: 4
Motif ID: 36
Motif name: csGCCCCGCCCCsc
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0524114

Alignment:
BBGGGGCGGGGCVD
--DGGGYGKGGC--

Original motif     Consensus sequence: HVGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCVD


Dataset #: 4
Motif ID: 38
Motif name: cccGCCCCGCCCCsb
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0558821

Alignment:
BBGGGGCGGGGCGGB
--DGGGYGKGGC---

Original motif     Consensus sequence: BCCGCCCCGCCCCBB Reverse complement motif     Consensus sequence: BBGGGGCGGGGCGGB


Dataset #: 5
Motif ID: 46
Motif name: Zfx
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0987519

Alignment:
VAGGCCBBGGCVBB
-DGGGYGKGGC---

Original motif     Consensus sequence: BBVGCCBVGGCCTV Reverse complement motif     Consensus sequence: VAGGCCBBGGCVBB


Dataset #: 5
Motif ID: 48
Motif name: SP1
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.102706

Alignment:
CCCCKCCCCC
GCCYCMCCCD

Original motif     Consensus sequence: CCCCKCCCCC Reverse complement motif     Consensus sequence: GGGGGYGGGG


Dataset #: 5
Motif ID: 58
Motif name: Myc
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.105078

Alignment:
VGCACGTGGH
DGGGYGKGGC

Original motif     Consensus sequence: VGCACGTGGH Reverse complement motif     Consensus sequence: DCCACGTGCV


Dataset #: 5
Motif ID: 55
Motif name: Pax5
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 10
Similarity score: 0.105953

Alignment:
DGVBCABTGDWGCGKRRCSR
--------DGGGYGKGGC--

Original motif     Consensus sequence: DGVBCABTGDWGCGKRRCSR Reverse complement motif     Consensus sequence: MSGKKRCGCWDCABTGBBCD


Dataset #: 5
Motif ID: 57
Motif name: Mycn
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.10603

Alignment:
HSCACGTGGC
DGGGYGKGGC

Original motif     Consensus sequence: HSCACGTGGC Reverse complement motif     Consensus sequence: GCCACGTGSD


Dataset #: 2
Motif ID: 2
Motif name: Motif 2
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.110488

Alignment:
MTMMTCMMTCTKCK
-GCCYCMCCCD---

Original motif     Consensus sequence: RGRAGARRGARRAR Reverse complement motif     Consensus sequence: MTMMTCMMTCTKCK


Results created by MOTIFSIM on 06-18-2018 14:32:36
Runtime: 695.758 seconds

MOTIFSIM is written by Ngoc Tam L. Tran
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