MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.2

INPUT

Input Parameters
Number of files: 5
Number of top significant motifs: 10
Number of best matches: 10
Similarity cutoff >= 0.75
Matching motif database: UniProbe Mus Musculus
Motif tree: Yes
Combined similar motifs: Yes
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
DREME_DM230.txt 1 1
MEME_DM230.txt 20 2
PScanChIP_DM230.txt 14 3
RSAT_peak-motifs_DM230.txt 10 4
PScanChIP_DM230.txt 14 5

RESULTS

Best Matches in Database for Each Motif (Highest to Lowest)

Dataset #: 1 Motif ID: 1 Motif name: Motif 1

Original motif Reverse complement motif
Consensus sequence: GGCGGGGC Consensus sequence: GCCCCGCC

Best Matches for Motif ID 1 (Highest to Lowest)

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0

Alignment:
HBDRCCMCGCCCHHHD
---GCCCCGCC-----

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.00617043

Alignment:
BHBHDTGGCGGGGBDHD
------GGCGGGGC---

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD

Motif ID: UP00002
Motif name: Sp4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0145996

Alignment:
BDWAGGCGTGBCHHD
----GGCGGGGC---

Original motif Reverse complement motif
Consensus sequence: BDWAGGCGTGBCHHD Consensus sequence: HHDGBCACGCCTWDB

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 8
Similarity score: 0.0233506

Alignment:
BDHHMCGCCCCCTHVBB
-GCCCCGCC--------

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Motif ID: UP00024
Motif name: Glis2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0291232

Alignment:
HHHVGACCCCCCVBRD
----GCCCCGCC----

Original motif Reverse complement motif
Consensus sequence: HHHVGACCCCCCVBRD Consensus sequence: HKBBGGGGGGTCVHHH

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0338469

Alignment:
BHHDYGGGGGGGGBVD
-----GGCGGGGC---

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0361147

Alignment:
VHTGCGGGGGCGGH
---GGCGGGGC---

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH

Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0374146

Alignment:
DTVBDDRGACCACCCAGDWDGBH
-------GCCCCGCC--------

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH

Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.0376381

Alignment:
ABBBBVVRGACCACCCACRDBBM
--------GCCCCGCC-------

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0392043

Alignment:
GKRGGGGGGGGGGBD
---GGCGGGGC----

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Dataset #: 2 Motif ID: 2 Motif name: Motif 2

Original motif Reverse complement motif
Consensus sequence: RGRAGARRGARRAR Consensus sequence: MTMMTCMMTCTKCK

Best Matches for Motif ID 2 (Highest to Lowest)

Motif ID: UP00013
Motif name: Gabpa_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0378622

Alignment:
DBVVDRSGGAWKVHKG
RGRAGARRGARRAR--

Original motif Reverse complement motif
Consensus sequence: CYDBYWTCCSMHBVVH Consensus sequence: DBVVDRSGGAWKVHKG

Motif ID: UP00101
Motif name: Sox12_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.038148

Alignment:
VVDBASACAAAGRADH
-RGRAGARRGARRAR-

Original motif Reverse complement motif
Consensus sequence: VVDBASACAAAGRADH Consensus sequence: HDTMCTTTGTSTVDBB

Motif ID: UP00058
Motif name: Tcf3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.039618

Alignment:
DVBSBDAHAHAHAHH
RGRAGARRGARRAR-

Original motif Reverse complement motif
Consensus sequence: DVBSBDAHAHAHAHH Consensus sequence: HHTHTHTHTDBSBVD

Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 14
Similarity score: 0.0407385

Alignment:
MWSMBAARRATGCDCABHATGD
MTMMTCMMTCTKCK--------

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0409403

Alignment:
BVVHAGGGGGCGRDHHB
-RGRAGARRGARRAR--

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0411988

Alignment:
BHVDCCCCDCCCBDBH
RGRAGARRGARRAR--

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB

Motif ID: UP00059
Motif name: Arid5a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0412606

Alignment:
BDYDVAATACGADDBVV
---RGRAGARRGARRAR

Original motif Reverse complement motif
Consensus sequence: BDYDVAATACGADDBVV Consensus sequence: BBVDDTCGTATTVDMHB

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0419643

Alignment:
HDBABCGBKRGYGGCGMSBHAK
--RGRAGARRGARRAR------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0420085

Alignment:
VBDDAAAAAAAAMVBHH
---RGRAGARRGARRAR

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0430662

Alignment:
DBCCCCCCCCCCMYC
RGRAGARRGARRAR-

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Dataset #: 2 Motif ID: 3 Motif name: Motif 3

Original motif Reverse complement motif
Consensus sequence: AWAAAWTWAAASWA Consensus sequence: TWSTTTWAWTTTWT

Best Matches for Motif ID 3 (Highest to Lowest)

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0232094

Alignment:
HDDDATTTTATTKVRDB
--TWSTTTWAWTTTWT-

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.024404

Alignment:
VBDDAAAAAAAAMVBHH
--AWAAAWTWAAASWA-

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0273798

Alignment:
HARTHAATTAWTAVDHD
--AWAAAWTWAAASWA-

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH

Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0293574

Alignment:
DBTHHAAAAAAAAVHDH
--AWAAAWTWAAASWA-

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH

Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0316804

Alignment:
HDYAAAHAAMAADHD
AWAAAWTWAAASWA-

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH

Motif ID: UP00134
Motif name: Hoxb13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.031986

Alignment:
VDHWTTTTATTGGDKB
-TWSTTTWAWTTTWT-

Original motif Reverse complement motif
Consensus sequence: VRHCCAATAAAAWHHV Consensus sequence: VDHWTTTTATTGGDKB

Motif ID: UP00078
Motif name: Arid3a_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0323368

Alignment:
DHHYTTTAATTAAHBBV
TWSTTTWAWTTTWT---

Original motif Reverse complement motif
Consensus sequence: VBBHTTAATTAAAMHHH Consensus sequence: DHHYTTTAATTAAHBBV

Motif ID: UP00004
Motif name: Sox14_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0327495

Alignment:
DDDWATTATAATTHDH
--TWSTTTWAWTTTWT

Original motif Reverse complement motif
Consensus sequence: DHHAATTATAATWDDH Consensus sequence: DDDWATTATAATTHDH

Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0332268

Alignment:
HDHHTTTTATTKKHDD
-TWSTTTWAWTTTWT-

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD

Motif ID: UP00097
Motif name: Mtf1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.034592

Alignment:
HDATAHDAAAHADV
AWAAAWTWAAASWA

Original motif Reverse complement motif
Consensus sequence: HDATAHDAAAHADV Consensus sequence: VDTHTTTHHTATDH

Dataset #: 2 Motif ID: 4 Motif name: Motif 4

Original motif Reverse complement motif
Consensus sequence: AAAAWTTRCWT Consensus sequence: AWGKAAWTTTT

Best Matches for Motif ID 4 (Highest to Lowest)

Motif ID: UP00044
Motif name: Mafk_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.022187

Alignment:
VHAAAAADTGCAHBR
--AAAAWTTRCWT--

Original motif Reverse complement motif
Consensus sequence: VHAAAAADTGCAHBR Consensus sequence: MBHTGCADTTTTTHV

Motif ID: UP00075
Motif name: Sox15_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0318877

Alignment:
DHVKMWATTGTTHDHDH
AWGKAAWTTTT------

Original motif Reverse complement motif
Consensus sequence: HDDDDAACAATWRRBHD Consensus sequence: DHVKMWATTGTTHDHDH

Motif ID: UP00091
Motif name: Sox5_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0333897

Alignment:
DHDDWATTGTTCDDHD
AWGKAAWTTTT-----

Original motif Reverse complement motif
Consensus sequence: DHDDGAACAATWDDHD Consensus sequence: DHDDWATTGTTCDDHD

Motif ID: UP00014
Motif name: Sox17_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0352391

Alignment:
DDWTBAATTGTTDDB
-AWGKAAWTTTT---

Original motif Reverse complement motif
Consensus sequence: VDDAACAATTVAWHD Consensus sequence: DDWTBAATTGTTDDB

Motif ID: UP00069
Motif name: Sox1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0357052

Alignment:
HBDTAATTGTTABBV
AWGKAAWTTTT----

Original motif Reverse complement motif
Consensus sequence: HBDTAATTGTTABBV Consensus sequence: VBVTAACAATTADVD

Motif ID: UP00096
Motif name: Sox13_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0361647

Alignment:
WHDWWATTGTTCKDHD
AWGKAAWTTTT-----

Original motif Reverse complement motif
Consensus sequence: DHDRGAACAATWWDHW Consensus sequence: WHDWWATTGTTCKDHD

Motif ID: UP00126
Motif name: Dlx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0370352

Alignment:
VVDRTAATTABHHHAB
--AAAAWTTRCWT---

Original motif Reverse complement motif
Consensus sequence: VVDRTAATTABHHHAB Consensus sequence: BTDHHBTAATTAKDVV

Motif ID: UP00074
Motif name: Isgf3g_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0371842

Alignment:
BVAAAACABDACHD
---AAAAWTTRCWT

Original motif Reverse complement motif
Consensus sequence: BVAAAACABDACHD Consensus sequence: DHGTDVTGTTTTVB

Motif ID: UP00170
Motif name: Isl2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0377846

Alignment:
HWDTTAATYKMTTHHR
-AWGKAAWTTTT----

Original motif Reverse complement motif
Consensus sequence: MHHAAYYMATTAADWH Consensus sequence: HWDTTAATYKMTTHHR

Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0386497

Alignment:
HHBBMCTTTGTTHDDBH
AWGKAAWTTTT------

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH

Dataset #: 2 Motif ID: 5 Motif name: Motif 5

Original motif Reverse complement motif
Consensus sequence: AWTAAATAYAATTT Consensus sequence: AAATTKTATTTAWT

Best Matches for Motif ID 5 (Highest to Lowest)

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0258732

Alignment:
HDDDATTTTATTKVRDB
--AAATTKTATTTAWT-

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB

Motif ID: UP00169
Motif name: Lmx1b
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0275967

Alignment:
VDWWWTTAATTAATDHB
AAATTKTATTTAWT---

Original motif Reverse complement motif
Consensus sequence: VDWWWTTAATTAATDHB Consensus sequence: BHDATTAATTAAWWWHB

Motif ID: UP00212
Motif name: Lhx5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0276125

Alignment:
VDHWTTTAATTAATHHV
AAATTKTATTTAWT---

Original motif Reverse complement motif
Consensus sequence: VDHATTAATTAAAWHHB Consensus sequence: VDHWTTTAATTAATHHV

Motif ID: UP00016
Motif name: Sry_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.027741

Alignment:
BHDHATTATAATDDDV
AWTAAATAYAATTT--

Original motif Reverse complement motif
Consensus sequence: BHDHATTATAATDDDV Consensus sequence: VDDDATTATAATHDHV

Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0290926

Alignment:
HDHHTTTTATTKKHDD
-AAATTKTATTTAWT-

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD

Motif ID: UP00004
Motif name: Sox14_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.029483

Alignment:
DHHAATTATAATWDDH
AWTAAATAYAATTT--

Original motif Reverse complement motif
Consensus sequence: DHHAATTATAATWDDH Consensus sequence: DDDWATTATAATTHDH

Motif ID: UP00130
Motif name: Lhx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.029893

Alignment:
VHHWWTTAATTAATTDV
AAATTKTATTTAWT---

Original motif Reverse complement motif
Consensus sequence: VDAATTAATTAAWWHHB Consensus sequence: VHHWWTTAATTAATTDV

Motif ID: UP00134
Motif name: Hoxb13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.030701

Alignment:
VDHWTTTTATTGGDKB
-AAATTKTATTTAWT-

Original motif Reverse complement motif
Consensus sequence: VRHCCAATAAAAWHHV Consensus sequence: VDHWTTTTATTGGDKB

Motif ID: UP00266
Motif name: Prrx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0314917

Alignment:
AVDAKKTAATTAGTTVV
AAATTKTATTTAWT---

Original motif Reverse complement motif
Consensus sequence: VBAACTAATTARYTDVT Consensus sequence: AVDAKKTAATTAGTTVV

Motif ID: UP00262
Motif name: Lhx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0319088

Alignment:
BHTWWTTAATTAATDVV
AAATTKTATTTAWT---

Original motif Reverse complement motif
Consensus sequence: VVDATTAATTAAWWAHB Consensus sequence: BHTWWTTAATTAATDVV

Dataset #: 2 Motif ID: 6 Motif name: Motif 6

Original motif Reverse complement motif
Consensus sequence: AATTYDGAARTAWW Consensus sequence: WWTAKTTCDKAATT

Best Matches for Motif ID 6 (Highest to Lowest)

Motif ID: UP00015
Motif name: Ehf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0435331

Alignment:
WDSHTYGGAAVTDVDW
-AATTYDGAARTAWW-

Original motif Reverse complement motif
Consensus sequence: WDVDABTTCCKAHSDW Consensus sequence: WDSHTYGGAAVTDVDW

Motif ID: UP00044
Motif name: Mafk_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0443465

Alignment:
HAGTCAGCAWTTTWD
AATTYDGAARTAWW-

Original motif Reverse complement motif
Consensus sequence: DWAAAWTGCTGACTH Consensus sequence: HAGTCAGCAWTTTWD

Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0477209

Alignment:
HDTYTTGTTWTKDDDT
--WWTAKTTCDKAATT

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT

Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0481558

Alignment:
DHDBTAWTAATTHAKTH
--WWTAKTTCDKAATT-

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH

Motif ID: UP00097
Motif name: Mtf1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0495241

Alignment:
VDTHTTTHHTATDH
WWTAKTTCDKAATT

Original motif Reverse complement motif
Consensus sequence: HDATAHDAAAHADV Consensus sequence: VDTHTTTHHTATDH

Motif ID: UP00262
Motif name: Lhx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0497972

Alignment:
BHTWWTTAATTAATDVV
-WWTAKTTCDKAATT--

Original motif Reverse complement motif
Consensus sequence: VVDATTAATTAAWWAHB Consensus sequence: BHTWWTTAATTAATDVV

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 14
Similarity score: 0.0511395

Alignment:
WBHHHHHMDATTGTTHDHDVHH
--------WWTAKTTCDKAATT

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0517233

Alignment:
DMTWDGTCAGCADWTTH
---AATTYDGAARTAWW

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH

Motif ID: UP00130
Motif name: Lhx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0519872

Alignment:
VHHWWTTAATTAATTDV
-WWTAKTTCDKAATT--

Original motif Reverse complement motif
Consensus sequence: VDAATTAATTAAWWHHB Consensus sequence: VHHWWTTAATTAATTDV

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0521736

Alignment:
DWAATRTAAACAAWVVB
AATTYDGAARTAWW---

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Dataset #: 2 Motif ID: 7 Motif name: Motif 7

Original motif Reverse complement motif
Consensus sequence: CSKCCCCGCCCCSY Consensus sequence: MSGGGGCGGGGYSG

Best Matches for Motif ID 7 (Highest to Lowest)

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.000548354

Alignment:
DHHDGGGCGRGGKHBH
-MSGGGGCGGGGYSG-

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.00741351

Alignment:
DHHBCCCCGCCAHHBHB
-CSKCCCCGCCCCSY--

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0114155

Alignment:
HVBCCCCCCCCMHHHB
CSKCCCCGCCCCSY--

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0133301

Alignment:
DBCCCCCCCCCCMYC
-CSKCCCCGCCCCSY

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0158143

Alignment:
HHHHDGGGGCGGDBHDV
---MSGGGGCGGGGYSG

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0242521

Alignment:
BHHDTCCCACTCBDBV
-CSKCCCCGCCCCSY-

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV

Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0244083

Alignment:
BHVDCCCCDCCCBDBH
-CSKCCCCGCCCCSY-

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB

Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 14
Similarity score: 0.0264047

Alignment:
YBVDMGTGGGTGGTCKVVBVBBT
----MSGGGGCGGGGYSG-----

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 14
Similarity score: 0.0276053

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
------MSGGGGCGGGGYSG---

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 14
Similarity score: 0.0290826

Alignment:
BTBVTCVTGGGTGGTCMVVDVBB
-----MSGGGGCGGGGYSG----

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Dataset #: 2 Motif ID: 8 Motif name: Motif 8

Original motif Reverse complement motif
Consensus sequence: AAATRWTAAAATCA Consensus sequence: TGATTTTAWKATTT

Best Matches for Motif ID 8 (Highest to Lowest)

Motif ID: UP00173
Motif name: Hoxc13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0325737

Alignment:
DHWTTTTAMGAGBDHH
TGATTTTAWKATTT--

Original motif Reverse complement motif
Consensus sequence: HHDBCTCRTAAAAWHD Consensus sequence: DHWTTTTAMGAGBDHH

Motif ID: UP00235
Motif name: Hoxc11
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.036026

Alignment:
HDHTTTTACGACDTTH
TGATTTTAWKATTT--

Original motif Reverse complement motif
Consensus sequence: HAADGTCGTAAAAHDD Consensus sequence: HDHTTTTACGACDTTH

Motif ID: UP00183
Motif name: Hoxa13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0380573

Alignment:
DVWTTTTACGAGBHDH
TGATTTTAWKATTT--

Original motif Reverse complement motif
Consensus sequence: HDHBCTCGTAAAAWBD Consensus sequence: DVWTTTTACGAGBHDH

Motif ID: UP00246
Motif name: Hoxa11
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.039136

Alignment:
DDDTTTTACGACDTDH
TGATTTTAWKATTT--

Original motif Reverse complement motif
Consensus sequence: HDADGTCGTAAAAHDD Consensus sequence: DDDTTTTACGACDTDH

Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0391372

Alignment:
HDHYYAATAAAAHHHH
-AAATRWTAAAATCA-

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD

Motif ID: UP00117
Motif name: Hoxd11
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.039319

Alignment:
DDDHTTTTACGACVDHH
-TGATTTTAWKATTT--

Original motif Reverse complement motif
Consensus sequence: HHDVGTCGTAAAAHHHD Consensus sequence: DDDHTTTTACGACVDHH

Motif ID: UP00207
Motif name: Hoxb9
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0397774

Alignment:
VRRGCMATAAAAHHHD
-AAATRWTAAAATCA-

Original motif Reverse complement motif
Consensus sequence: VRRGCMATAAAAHHHD Consensus sequence: HDHHTTTTATRGCKMV

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0397808

Alignment:
VDKVYAATAAAATDDDH
-AAATRWTAAAATCA--

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB

Motif ID: UP00177
Motif name: Hoxd12
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0400538

Alignment:
DHDHTTTTACGACVDHD
-TGATTTTAWKATTT--

Original motif Reverse complement motif
Consensus sequence: HHDVGTCGTAAAAHHHD Consensus sequence: DHDHTTTTACGACVDHD

Motif ID: UP00016
Motif name: Sry_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0409601

Alignment:
VDDDATTATAATHDHV
AAATRWTAAAATCA--

Original motif Reverse complement motif
Consensus sequence: BHDHATTATAATDDDV Consensus sequence: VDDDATTATAATHDHV

Dataset #: 2 Motif ID: 9 Motif name: Motif 9

Original motif Reverse complement motif
Consensus sequence: AATHATATWTHAAA Consensus sequence: TTTDAWATATHATT

Best Matches for Motif ID 9 (Highest to Lowest)

Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0521335

Alignment:
DBTHHAAAAAAAAVHDH
--TTTDAWATATHATT-

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH

Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0522843

Alignment:
DHDBTAWTAATTHAKTH
--TTTDAWATATHATT-

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH

Motif ID: UP00091
Motif name: Sox5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0548459

Alignment:
DHDCATMATTDASDD
AATHATATWTHAAA-

Original motif Reverse complement motif
Consensus sequence: DHDCATMATTDASDD Consensus sequence: DHSTDAATYATGDHD

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0549685

Alignment:
VDKVYAATAAAATDDDH
---AATHATATWTHAAA

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB

Motif ID: UP00078
Motif name: Arid3a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0553164

Alignment:
VBBHTTAATTAAAMHHH
AATHATATWTHAAA---

Original motif Reverse complement motif
Consensus sequence: VBBHTTAATTAAAMHHH Consensus sequence: DHHYTTTAATTAAHBBV

Motif ID: UP00169
Motif name: Lmx1b
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0554285

Alignment:
BHDATTAATTAAWWWHB
---TTTDAWATATHATT

Original motif Reverse complement motif
Consensus sequence: VDWWWTTAATTAATDHB Consensus sequence: BHDATTAATTAAWWWHB

Motif ID: UP00141
Motif name: Vsx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 14
Similarity score: 0.0554615

Alignment:
VHTDHTTAATTAAMHVG
AATHATATWTHAAA---

Original motif Reverse complement motif
Consensus sequence: CVHRTTAATTAAHDAHB Consensus sequence: VHTDHTTAATTAAMHVG

Motif ID: UP00024
Motif name: Glis2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0558193

Alignment:
BVTTTAHTAATADH
TTTDAWATATHATT

Original motif Reverse complement motif
Consensus sequence: HDTATTAHTAAAVV Consensus sequence: BVTTTAHTAATADH

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0563339

Alignment:
HBHDVHDTCTTATCTHTDDHDV
-------TTTDAWATATHATT-

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00194
Motif name: Irx4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0570128

Alignment:
DBTWTWACATGTWDHDW
--TTTDAWATATHATT-

Original motif Reverse complement motif
Consensus sequence: WDHDWACATGTWAWABD Consensus sequence: DBTWTWACATGTWDHDW

Dataset #: 2 Motif ID: 10 Motif name: Motif 10

Original motif Reverse complement motif
Consensus sequence: TTTCATAAWT Consensus sequence: AWTTATGAAA

Best Matches for Motif ID 10 (Highest to Lowest)

Motif ID: UP00118
Motif name: Pou4f3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.017789

Alignment:
GHYHTYATTAATAAVH
--TTTCATAAWT----

Original motif Reverse complement motif
Consensus sequence: HVTTATTAATKADKHC Consensus sequence: GHYHTYATTAATAAVH

Motif ID: UP00211
Motif name: Pou3f3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0192304

Alignment:
HADDTATGCATAATDDA
-----TTTCATAAWT--

Original motif Reverse complement motif
Consensus sequence: HADDTATGCATAATDDA Consensus sequence: TDDATTATGCATADDTH

Motif ID: UP00179
Motif name: Pou2f3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0193076

Alignment:
BHHVATTTGCATAHHV
AWTTATGAAA------

Original motif Reverse complement motif
Consensus sequence: BHDTATGCAAATBHDV Consensus sequence: BHHVATTTGCATAHHV

Motif ID: UP00191
Motif name: Pou2f2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0200501

Alignment:
BHDTATGCAAATDHDV
------TTTCATAAWT

Original motif Reverse complement motif
Consensus sequence: BHDTATGCAAATDHDV Consensus sequence: BHHDATTTGCATAHHV

Motif ID: UP00130
Motif name: Lhx3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.020314

Alignment:
VHHWWTTAATTAATTDV
----TTTCATAAWT---

Original motif Reverse complement motif
Consensus sequence: VDAATTAATTAAWWHHB Consensus sequence: VHHWWTTAATTAATTDV

Motif ID: UP00212
Motif name: Lhx5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0203295

Alignment:
VDHWTTTAATTAATHHV
----TTTCATAAWT---

Original motif Reverse complement motif
Consensus sequence: VDHATTAATTAAAWHHB Consensus sequence: VDHWTTTAATTAATHHV

Motif ID: UP00169
Motif name: Lmx1b
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0232405

Alignment:
VDWWWTTAATTAATDHB
----TTTCATAAWT---

Original motif Reverse complement motif
Consensus sequence: VDWWWTTAATTAATDHB Consensus sequence: BHDATTAATTAAWWWHB

Motif ID: UP00045
Motif name: Mafb_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0250697

Alignment:
HVDTTGCAAAAWWDH
---TTTCATAAWT--

Original motif Reverse complement motif
Consensus sequence: HVDTTGCAAAAWWDH Consensus sequence: HDWWTTTTGCAADBD

Motif ID: UP00199
Motif name: Six4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 10
Similarity score: 0.0256033

Alignment:
ADDHATGACACCBHBBV
-------TTTCATAAWT

Original motif Reverse complement motif
Consensus sequence: ADDHATGACACCBHBBV Consensus sequence: BBVHVGGTGTCATHDDT

Motif ID: UP00173
Motif name: Hoxc13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0262559

Alignment:
HHDBCTCRTAAAAWHD
---TTTCATAAWT---

Original motif Reverse complement motif
Consensus sequence: HHDBCTCRTAAAAWHD Consensus sequence: DHWTTTTAMGAGBDHH

Dataset #: 2 Motif ID: 11 Motif name: Motif 11

Original motif Reverse complement motif
Consensus sequence: ATTTWATGAAA Consensus sequence: TTTCATWAAAT

Best Matches for Motif ID 11 (Highest to Lowest)

Motif ID: UP00130
Motif name: Lhx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0235917

Alignment:
VHHWWTTAATTAATTDV
----TTTCATWAAAT--

Original motif Reverse complement motif
Consensus sequence: VDAATTAATTAAWWHHB Consensus sequence: VHHWWTTAATTAATTDV

Motif ID: UP00212
Motif name: Lhx5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0238582

Alignment:
VDHWTTTAATTAATHHV
---ATTTWATGAAA---

Original motif Reverse complement motif
Consensus sequence: VDHATTAATTAAAWHHB Consensus sequence: VDHWTTTAATTAATHHV

Motif ID: UP00173
Motif name: Hoxc13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.024458

Alignment:
HHDBCTCRTAAAAWHD
---TTTCATWAAAT--

Original motif Reverse complement motif
Consensus sequence: HHDBCTCRTAAAAWHD Consensus sequence: DHWTTTTAMGAGBDHH

Motif ID: UP00169
Motif name: Lmx1b
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0247146

Alignment:
VDWWWTTAATTAATDHB
----TTTCATWAAAT--

Original motif Reverse complement motif
Consensus sequence: VDWWWTTAATTAATDHB Consensus sequence: BHDATTAATTAAWWWHB

Motif ID: UP00188
Motif name: Lmx1a
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0250542

Alignment:
CVHHTTAATTAAWWWHB
--ATTTWATGAAA----

Original motif Reverse complement motif
Consensus sequence: CVHHTTAATTAAWWWHB Consensus sequence: BDWWWTTAATTAAHHVG

Motif ID: UP00197
Motif name: Hoxc9
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0275369

Alignment:
VDHHTTAATGACCBHV
--ATTTWATGAAA---

Original motif Reverse complement motif
Consensus sequence: VDVGGTCATTAAHHDB Consensus sequence: VDHHTTAATGACCBHV

Motif ID: UP00117
Motif name: Hoxd11
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.028378

Alignment:
DDDHTTTTACGACVDHH
---ATTTWATGAAA---

Original motif Reverse complement motif
Consensus sequence: HHDVGTCGTAAAAHHHD Consensus sequence: DDDHTTTTACGACVDHH

Motif ID: UP00213
Motif name: Hoxa9
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0286621

Alignment:
DCGGYCATWAAAWTADW
--TTTCATWAAAT----

Original motif Reverse complement motif
Consensus sequence: DCGGYCATWAAAWTADW Consensus sequence: WDTAWTTTWATGKCCGD

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0288394

Alignment:
VDKVYAATAAAATDDDH
--TTTCATWAAAT----

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB

Motif ID: UP00183
Motif name: Hoxa13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.028941

Alignment:
HDHBCTCGTAAAAWBD
---TTTCATWAAAT--

Original motif Reverse complement motif
Consensus sequence: HDHBCTCGTAAAAWBD Consensus sequence: DVWTTTTACGAGBHDH

Dataset #: 2 Motif ID: 12 Motif name: Motif 12

Original motif Reverse complement motif
Consensus sequence: AAAACAAA Consensus sequence: TTTGTTTT

Best Matches for Motif ID 12 (Highest to Lowest)

Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0

Alignment:
HBDDDAACAAAGRVBHH
---AAAACAAA------

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH

Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.000282957

Alignment:
HBDDRAACAAAGRABHH
---AAAACAAA------

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH

Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.00309128

Alignment:
BBVTTTGTTTACATTDD
---TTTGTTTT------

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.00620509

Alignment:
VVVWTTGTTTAMATTWD
---TTTGTTTT------

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00680733

Alignment:
HDHADGTAAACAAAVVH
------AAAACAAA---

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH

Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0130585

Alignment:
DDDHTTTGTTTAMHDH
----TTTGTTTT----

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH

Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0137227

Alignment:
ADDDYAWAACAAMAHH
-----AAAACAAA---

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT

Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0160723

Alignment:
BDVTTTKTTTACWTWHH
---TTTGTTTT------

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH

Motif ID: UP00101
Motif name: Sox12_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0161675

Alignment:
DWTHAVAACAATHA
----AAAACAAA--

Original motif Reverse complement motif
Consensus sequence: THATTGTTVTHAWH Consensus sequence: DWTHAVAACAATHA

Motif ID: UP00039
Motif name: Foxj3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0164735

Alignment:
DVHWDTGTTWTGDTBDH
---TTTGTTTT------

Original motif Reverse complement motif
Consensus sequence: HDBAHCAWAACADWDVD Consensus sequence: DVHWDTGTTWTGDTBDH

Dataset #: 2 Motif ID: 13 Motif name: Motif 13

Original motif Reverse complement motif
Consensus sequence: AAAGATTT Consensus sequence: AAATCTTT

Best Matches for Motif ID 13 (Highest to Lowest)

Motif ID: UP00114
Motif name: Homez
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.00327586

Alignment:
AHWWMATCGTTTTBADD
---AAATCTTT------

Original motif Reverse complement motif
Consensus sequence: AHWWMATCGTTTTBADD Consensus sequence: HDTVAAAACGATRWWHT

Motif ID: UP00148
Motif name: Hdx
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0107572

Alignment:
DDKDHGAAATCAHHBHV
------AAATCTTT---

Original motif Reverse complement motif
Consensus sequence: DDKDHGAAATCAHHBHV Consensus sequence: BDBDHTGATTTCDHYDD

Motif ID: UP00080
Motif name: Gata5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0119733

Alignment:
VVBHRAGATATCWDHBB
---AAAGATTT------

Original motif Reverse complement motif
Consensus sequence: VVBHRAGATATCWDHBB Consensus sequence: VVHHWGATATCTMHBBV

Motif ID: UP00059
Motif name: Arid5a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0140725

Alignment:
HDTDVCAATATTMV
-----AAAGATTT-

Original motif Reverse complement motif
Consensus sequence: VYAATATTGVDADH Consensus sequence: HDTDVCAATATTMV

Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.0151544

Alignment:
VDDAGATCAAAGGKDDD
--------AAAGATTT-

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD

Motif ID: UP00208
Motif name: Obox5_3963.2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.015824

Alignment:
VRVAGGGATTAAHTVWV
---AAAGATTT------

Original motif Reverse complement motif
Consensus sequence: VRVAGGGATTAAHTVWV Consensus sequence: VWBAHTTAATCCCTVKB

Motif ID: UP00167
Motif name: En1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0159173

Alignment:
VHRKTAATTAGTTVVV
-----AAATCTTT---

Original motif Reverse complement motif
Consensus sequence: VVVAACTAATTARKDV Consensus sequence: VHRKTAATTAGTTVVV

Motif ID: UP00145
Motif name: Barhl2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0164085

Alignment:
HHBTTAATTGDTTYTH
-----AAATCTTT---

Original motif Reverse complement motif
Consensus sequence: HAMAAHCAATTAABHH Consensus sequence: HHBTTAATTGDTTYTH

Motif ID: UP00125
Motif name: Pitx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0166506

Alignment:
DDDVRGGATTAATHDDH
---AAAGATTT------

Original motif Reverse complement motif
Consensus sequence: DDDVRGGATTAATHDDH Consensus sequence: DDDDATTAATCCMBDHD

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0204535

Alignment:
HBHDVHDTCTTATCTHTDDHDV
---------AAATCTTT-----

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Dataset #: 2 Motif ID: 14 Motif name: Motif 14

Original motif Reverse complement motif
Consensus sequence: AWAAATAA Consensus sequence: TTATTTWT

Best Matches for Motif ID 14 (Highest to Lowest)

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.00506466

Alignment:
HBHDVHDTCTTATCTHTDDHDV
---------TTATTTWT-----

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.00546278

Alignment:
DWAATRTAAACAAWVVB
-----AWAAATAA----

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Motif ID: UP00118
Motif name: Pou4f3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.00832205

Alignment:
GHYHTYATTAATAAVH
----TTATTTWT----

Original motif Reverse complement motif
Consensus sequence: HVTTATTAATKADKHC Consensus sequence: GHYHTYATTAATAAVH

Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.00912866

Alignment:
HHHTTRTTDTTTKDH
---TTATTTWT----

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH

Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0105685

Alignment:
HDHADGTAAACAAAVVH
-----AWAAATAA----

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH

Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0141517

Alignment:
DDAATGTAAACAAAVVB
-----AWAAATAA----

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD

Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0142824

Alignment:
HDHHTTTTATTKKHDD
------TTATTTWT--

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD

Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0155566

Alignment:
HHWAWGTAAAYAAAVDB
-----AWAAATAA----

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH

Motif ID: UP00200
Motif name: Nkx6-1_2825.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0158439

Alignment:
DVHAATTAATTAMYBBG
-AWAAATAA--------

Original motif Reverse complement motif
Consensus sequence: DVHAATTAATTAMYBBG Consensus sequence: CBVMRTAATTAATTHBH

Motif ID: UP00105
Motif name: Pou3f4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.0159057

Alignment:
DVHTAATTAATTADDDB
--AWAAATAA-------

Original motif Reverse complement motif
Consensus sequence: DVHTAATTAATTADDDB Consensus sequence: BDDDTAATTAATTAHBD

Dataset #: 2 Motif ID: 15 Motif name: Motif 15

Original motif Reverse complement motif
Consensus sequence: ATMACAATAAAA Consensus sequence: TTTTATTGTYAT

Best Matches for Motif ID 15 (Highest to Lowest)

Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.00878905

Alignment:
HDHHTTTTATTKKHDD
----TTTTATTGTYAT

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD

Motif ID: UP00134
Motif name: Hoxb13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0162131

Alignment:
VRHCCAATAAAAWHHV
ATMACAATAAAA----

Original motif Reverse complement motif
Consensus sequence: VRHCCAATAAAAWHHV Consensus sequence: VDHWTTTTATTGGDKB

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0246749

Alignment:
VDKVYAATAAAATDDDH
ATMACAATAAAA-----

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB

Motif ID: UP00091
Motif name: Sox5_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.0247927

Alignment:
DHDDWATTGTTCDDHD
-TTTTATTGTYAT---

Original motif Reverse complement motif
Consensus sequence: DHDDGAACAATWDDHD Consensus sequence: DHDDWATTGTTCDDHD

Motif ID: UP00207
Motif name: Hoxb9
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 12
Similarity score: 0.0248315

Alignment:
VRRGCMATAAAAHHHD
ATMACAATAAAA----

Original motif Reverse complement motif
Consensus sequence: VRRGCMATAAAAHHHD Consensus sequence: HDHHTTTTATRGCKMV

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 12
Similarity score: 0.0268436

Alignment:
HHBDHDDAACAATDRHHHHHBW
-----ATMACAATAAAA-----

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00051
Motif name: Sox8_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.02954

Alignment:
DDATBWATTGTTHHDDD
--TTTTATTGTYAT---

Original motif Reverse complement motif
Consensus sequence: DDATBWATTGTTHHDDD Consensus sequence: DDDHDAACAATWBATDD

Motif ID: UP00064
Motif name: Sox18_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0314917

Alignment:
HHDHABAACAATHBWV
TTTTATTGTYAT----

Original motif Reverse complement motif
Consensus sequence: BWBHATTGTTBTHDHH Consensus sequence: HHDHABAACAATHBWV

Motif ID: UP00096
Motif name: Sox13_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0318712

Alignment:
DHDRGAACAATWWDHW
---ATMACAATAAAA-

Original motif Reverse complement motif
Consensus sequence: DHDRGAACAATWWDHW Consensus sequence: WHDWWATTGTTCKDHD

Motif ID: UP00014
Motif name: Sox17_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0332895

Alignment:
DDWTBAATTGTTDDB
--TTTTATTGTYAT-

Original motif Reverse complement motif
Consensus sequence: VDDAACAATTVAWHD Consensus sequence: DDWTBAATTGTTDDB

Dataset #: 2 Motif ID: 16 Motif name: Motif 16

Original motif Reverse complement motif
Consensus sequence: ACAAWTRATTTTGA Consensus sequence: TCAAAATKAWTTGT

Best Matches for Motif ID 16 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0530035

Alignment:
HHBDHDDAACAATDRHHHHHBW
--------ACAAWTRATTTTGA

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00158
Motif name: Pou1f1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.059328

Alignment:
BDHDTAATTAATTADBH
-TCAAAATKAWTTGT--

Original motif Reverse complement motif
Consensus sequence: DVDTAATTAATTADDDB Consensus sequence: BDHDTAATTAATTADBH

Motif ID: UP00128
Motif name: Pou3f2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0618019

Alignment:
HHDVMTAATTAATTDDV
--TCAAAATKAWTTGT-

Original motif Reverse complement motif
Consensus sequence: VDDAATTAATTARBDHD Consensus sequence: HHDVMTAATTAATTDDV

Motif ID: UP00105
Motif name: Pou3f4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0620147

Alignment:
BDDDTAATTAATTAHBD
-TCAAAATKAWTTGT--

Original motif Reverse complement motif
Consensus sequence: DVHTAATTAATTADDDB Consensus sequence: BDDDTAATTAATTAHBD

Motif ID: UP00200
Motif name: Nkx6-1_2825.1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0623004

Alignment:
CBVMRTAATTAATTHBH
--TCAAAATKAWTTGT-

Original motif Reverse complement motif
Consensus sequence: DVHAATTAATTAMYBBG Consensus sequence: CBVMRTAATTAATTHBH

Motif ID: UP00167
Motif name: En1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0634894

Alignment:
VVVAACTAATTARKDV
-ACAAWTRATTTTGA-

Original motif Reverse complement motif
Consensus sequence: VVVAACTAATTARKDV Consensus sequence: VHRKTAATTAGTTVVV

Motif ID: UP00146
Motif name: Pou6f1_3733.1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0650456

Alignment:
VHHVATAATGAGSTDDH
--TCAAAATKAWTTGT-

Original motif Reverse complement motif
Consensus sequence: VHHVATAATGAGSTDDH Consensus sequence: DHDASCTCATTATVHHB

Motif ID: UP00145
Motif name: Barhl2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0651148

Alignment:
HAMAAHCAATTAABHH
-ACAAWTRATTTTGA-

Original motif Reverse complement motif
Consensus sequence: HAMAAHCAATTAABHH Consensus sequence: HHBTTAATTGDTTYTH

Motif ID: UP00168
Motif name: Hoxd8
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0654698

Alignment:
HADCMATTAATTADTTA
--ACAAWTRATTTTGA-

Original motif Reverse complement motif
Consensus sequence: TAADTAATTAATRGHTH Consensus sequence: HADCMATTAATTADTTA

Motif ID: UP00129
Motif name: Pou3f1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0654983

Alignment:
DVBTAATTAATTAABTH
--ACAAWTRATTTTGA-

Original motif Reverse complement motif
Consensus sequence: DVBTAATTAATTAABTH Consensus sequence: DAVTTAATTAATTAVBD

Dataset #: 2 Motif ID: 17 Motif name: Motif 17

Original motif Reverse complement motif
Consensus sequence: AAAAATGAAT Consensus sequence: ATTCATTTTT

Best Matches for Motif ID 17 (Highest to Lowest)

Motif ID: UP00055
Motif name: Hbp1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.00216896

Alignment:
HHDWTSAATGAATDDB
---AAAAATGAAT---

Original motif Reverse complement motif
Consensus sequence: HHDWTSAATGAATDDB Consensus sequence: VDHATTCATTSAWDDH

Motif ID: UP00145
Motif name: Barhl2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.010273

Alignment:
HAMAAHCAATTAABHH
AAAAATGAAT------

Original motif Reverse complement motif
Consensus sequence: HAMAAHCAATTAABHH Consensus sequence: HHBTTAATTGDTTYTH

Motif ID: UP00171
Motif name: Msx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0106868

Alignment:
HHVTTAATTKGTTHTV
--ATTCATTTTT----

Original motif Reverse complement motif
Consensus sequence: VAHAACYAATTAABHH Consensus sequence: HHVTTAATTKGTTHTV

Motif ID: UP00044
Motif name: Mafk_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0131738

Alignment:
MBHTGCADTTTTTHV
--ATTCATTTTT---

Original motif Reverse complement motif
Consensus sequence: VHAAAAADTGCAHBR Consensus sequence: MBHTGCADTTTTTHV

Motif ID: UP00105
Motif name: Pou3f4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0157045

Alignment:
DVHTAATTAATTADDDB
-AAAAATGAAT------

Original motif Reverse complement motif
Consensus sequence: DVHTAATTAATTADDDB Consensus sequence: BDDDTAATTAATTAHBD

Motif ID: UP00168
Motif name: Hoxd8
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0158473

Alignment:
HADCMATTAATTADTTA
-----ATTCATTTTT--

Original motif Reverse complement motif
Consensus sequence: TAADTAATTAATRGHTH Consensus sequence: HADCMATTAATTADTTA

Motif ID: UP00158
Motif name: Pou1f1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.0161731

Alignment:
DVDTAATTAATTADDDB
-AAAAATGAAT------

Original motif Reverse complement motif
Consensus sequence: DVDTAATTAATTADDDB Consensus sequence: BDHDTAATTAATTADBH

Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0163433

Alignment:
HBDDRAACAAAGRABHH
-----AAAAATGAAT--

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH

Motif ID: UP00129
Motif name: Pou3f1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.0163434

Alignment:
DVBTAATTAATTAABTH
-AAAAATGAAT------

Original motif Reverse complement motif
Consensus sequence: DVBTAATTAATTAABTH Consensus sequence: DAVTTAATTAATTAVBD

Motif ID: UP00200
Motif name: Nkx6-1_2825.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0167348

Alignment:
CBVMRTAATTAATTHBH
---AAAAATGAAT----

Original motif Reverse complement motif
Consensus sequence: DVHAATTAATTAMYBBG Consensus sequence: CBVMRTAATTAATTHBH

Dataset #: 2 Motif ID: 18 Motif name: Motif 18

Original motif Reverse complement motif
Consensus sequence: TTAGWTWATAA Consensus sequence: TTATWAWCTAA

Best Matches for Motif ID 18 (Highest to Lowest)

Motif ID: UP00262
Motif name: Lhx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0358953

Alignment:
VVDATTAATTAAWWAHB
----TTAGWTWATAA--

Original motif Reverse complement motif
Consensus sequence: VVDATTAATTAAWWAHB Consensus sequence: BHTWWTTAATTAATDVV

Motif ID: UP00129
Motif name: Pou3f1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.038042

Alignment:
DAVTTAATTAATTAVBD
---TTAGWTWATAA---

Original motif Reverse complement motif
Consensus sequence: DVBTAATTAATTAABTH Consensus sequence: DAVTTAATTAATTAVBD

Motif ID: UP00082
Motif name: Zfp187_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0384021

Alignment:
BTATGTACTAATWH
---TTAGWTWATAA

Original motif Reverse complement motif
Consensus sequence: BTATGTACTAATWH Consensus sequence: HWATTAGTACATAV

Motif ID: UP00146
Motif name: Pou6f1_1731.2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.0387939

Alignment:
DHDASCTCATTAWVVHV
------TTATWAWCTAA

Original motif Reverse complement motif
Consensus sequence: VHVVWTAATGAGSTDDH Consensus sequence: DHDASCTCATTAWVVHV

Motif ID: UP00169
Motif name: Lmx1b
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0395035

Alignment:
VDWWWTTAATTAATDHB
--TTATWAWCTAA----

Original motif Reverse complement motif
Consensus sequence: VDWWWTTAATTAATDHB Consensus sequence: BHDATTAATTAAWWWHB

Motif ID: UP00196
Motif name: Hoxa4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0396152

Alignment:
DDTHATTAATTAACKBG
--TTATWAWCTAA----

Original motif Reverse complement motif
Consensus sequence: DDTHATTAATTAACKBG Consensus sequence: CVRGTTAATTAATHADH

Motif ID: UP00142
Motif name: Uncx4.1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.03971

Alignment:
VDHDATTAATTAABVVG
--TTATWAWCTAA----

Original motif Reverse complement motif
Consensus sequence: VDHDATTAATTAABVVG Consensus sequence: CVVBTTAATTAATDHDV

Motif ID: UP00264
Motif name: Hoxa1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0401139

Alignment:
MBDRTAATTAGCTHAD
----TTATWAWCTAA-

Original motif Reverse complement motif
Consensus sequence: HTDAGCTAATTAMHBY Consensus sequence: MBDRTAATTAGCTHAD

Motif ID: UP00023
Motif name: Sox30_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0405076

Alignment:
VVVYATTATAATBDHA
-----TTATWAWCTAA

Original motif Reverse complement motif
Consensus sequence: THDBATTATAATMVVV Consensus sequence: VVVYATTATAATBDHA

Motif ID: UP00130
Motif name: Lhx3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0405397

Alignment:
VDAATTAATTAAWWHHB
----TTAGWTWATAA--

Original motif Reverse complement motif
Consensus sequence: VDAATTAATTAAWWHHB Consensus sequence: VHHWWTTAATTAATTDV

Dataset #: 2 Motif ID: 19 Motif name: Motif 19

Original motif Reverse complement motif
Consensus sequence: TTCWTAGATTAWA Consensus sequence: TWTAATCTAWGAA

Best Matches for Motif ID 19 (Highest to Lowest)

Motif ID: UP00208
Motif name: Obox5_2284.1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 13
Similarity score: 0.0233931

Alignment:
DHHAHTTAATCCCKVDH
----TWTAATCTAWGAA

Original motif Reverse complement motif
Consensus sequence: HDVRGGGATTAAHTHHH Consensus sequence: DHHAHTTAATCCCKVDH

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0251817

Alignment:
HBHDVHDTCTTATCTHTDDHDV
-------TWTAATCTAWGAA--

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00208
Motif name: Obox5_3963.2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 13
Similarity score: 0.026815

Alignment:
VWBAHTTAATCCCTVKB
----TWTAATCTAWGAA

Original motif Reverse complement motif
Consensus sequence: VRVAGGGATTAAHTVWV Consensus sequence: VWBAHTTAATCCCTVKB

Motif ID: UP00188
Motif name: Lmx1a
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.02879

Alignment:
BDWWWTTAATTAAHHVG
-TTCWTAGATTAWA---

Original motif Reverse complement motif
Consensus sequence: CVHHTTAATTAAWWWHB Consensus sequence: BDWWWTTAATTAAHHVG

Motif ID: UP00109
Motif name: Obox6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.028848

Alignment:
AHAADCGGATTAWHB
-TTCWTAGATTAWA-

Original motif Reverse complement motif
Consensus sequence: AHAADCGGATTAWHB Consensus sequence: BHWTAATCCGDTTHT

Motif ID: UP00262
Motif name: Lhx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0301327

Alignment:
BHTWWTTAATTAATDVV
-TTCWTAGATTAWA---

Original motif Reverse complement motif
Consensus sequence: VVDATTAATTAAWWAHB Consensus sequence: BHTWWTTAATTAATDVV

Motif ID: UP00112
Motif name: Gsc
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 13
Similarity score: 0.0301882

Alignment:
BHDMSGGATTAMMDWBH
TTCWTAGATTAWA----

Original motif Reverse complement motif
Consensus sequence: HVWHRYTAATCCSYDHV Consensus sequence: BHDMSGGATTAMMDWBH

Motif ID: UP00169
Motif name: Lmx1b
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 13
Similarity score: 0.0307426

Alignment:
BHDATTAATTAAWWWHB
---TWTAATCTAWGAA-

Original motif Reverse complement motif
Consensus sequence: VDWWWTTAATTAATDHB Consensus sequence: BHDATTAATTAAWWWHB

Motif ID: UP00129
Motif name: Pou3f1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.0308362

Alignment:
DVBTAATTAATTAABTH
-TWTAATCTAWGAA---

Original motif Reverse complement motif
Consensus sequence: DVBTAATTAATTAABTH Consensus sequence: DAVTTAATTAATTAVBD

Motif ID: UP00267
Motif name: Otx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 13
Similarity score: 0.031113

Alignment:
DDHHATTAATCCCKDHD
----TWTAATCTAWGAA

Original motif Reverse complement motif
Consensus sequence: DDDRGGGATTAATHDDH Consensus sequence: DDHHATTAATCCCKDHD

Dataset #: 2 Motif ID: 20 Motif name: Motif 20

Original motif Reverse complement motif
Consensus sequence: TTMAAAGATTT Consensus sequence: AAATCTTTYAA

Best Matches for Motif ID 20 (Highest to Lowest)

Motif ID: UP00145
Motif name: Barhl2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0251004

Alignment:
HAMAAHCAATTAABHH
--AAATCTTTYAA---

Original motif Reverse complement motif
Consensus sequence: HAMAAHCAATTAABHH Consensus sequence: HHBTTAATTGDTTYTH

Motif ID: UP00258
Motif name: Tgif2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0274736

Alignment:
AABBAGCTGTCAAWVV
--AAATCTTTYAA---

Original motif Reverse complement motif
Consensus sequence: AABBAGCTGTCAAWVV Consensus sequence: VBWTTGACAGCTVBTT

Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.0280825

Alignment:
VDDAGATCAAAGGKDDD
-----TTMAAAGATTT-

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD

Motif ID: UP00203
Motif name: Pknox1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0285392

Alignment:
DRVSASCTGTCAAWVV
--AAATCTTTYAA---

Original motif Reverse complement motif
Consensus sequence: DRVSASCTGTCAAWVV Consensus sequence: VVWTTGACAGSTSBKD

Motif ID: UP00186
Motif name: Meis1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0294621

Alignment:
WAVBASCTGTCAAWVH
--AAATCTTTYAA---

Original motif Reverse complement motif
Consensus sequence: WAVBASCTGTCAAWVH Consensus sequence: DBWTTGACAGSTBVTW

Motif ID: UP00226
Motif name: Mrg1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0296127

Alignment:
WAVBASCTGTCAAWHB
--AAATCTTTYAA---

Original motif Reverse complement motif
Consensus sequence: WAVBASCTGTCAAWHB Consensus sequence: BHWTTGACAGSTBBTW

Motif ID: UP00055
Motif name: Hbp1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.030034

Alignment:
VDHATTCATTSAWDDH
--AAATCTTTYAA---

Original motif Reverse complement motif
Consensus sequence: HHDWTSAATGAATDDB Consensus sequence: VDHATTCATTSAWDDH

Motif ID: UP00148
Motif name: Hdx
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0308277

Alignment:
BDBDHTGATTTCDHYDD
------AAATCTTTYAA

Original motif Reverse complement motif
Consensus sequence: DDKDHGAAATCAHHBHV Consensus sequence: BDBDHTGATTTCDHYDD

Motif ID: UP00059
Motif name: Arid5a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0312649

Alignment:
HDTDVCAATATTMV
--TTMAAAGATTT-

Original motif Reverse complement motif
Consensus sequence: VYAATATTGVDADH Consensus sequence: HDTDVCAATATTMV

Motif ID: UP00012
Motif name: Bbx_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0314419

Alignment:
HWBTTCAWTGAADTH
---TTMAAAGATTT-

Original motif Reverse complement motif
Consensus sequence: HADTTCAWTGAABWD Consensus sequence: HWBTTCAWTGAADTH

Dataset #: 2 Motif ID: 21 Motif name: Motif 21

Original motif Reverse complement motif
Consensus sequence: ATAAAA Consensus sequence: TTTTAT

Best Matches for Motif ID 21 (Highest to Lowest)

Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0

Alignment:
HDHHTTTTATTKKHDD
----TTTTAT------

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD

Motif ID: UP00134
Motif name: Hoxb13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.00902808

Alignment:
VRHCCAATAAAAWHHV
------ATAAAA----

Original motif Reverse complement motif
Consensus sequence: VRHCCAATAAAAWHHV Consensus sequence: VDHWTTTTATTGGDKB

Motif ID: UP00207
Motif name: Hoxb9
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.00908997

Alignment:
VRRGCMATAAAAHHHD
------ATAAAA----

Original motif Reverse complement motif
Consensus sequence: VRRGCMATAAAAHHHD Consensus sequence: HDHHTTTTATRGCKMV

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0141617

Alignment:
VDKVYAATAAAATDDDH
------ATAAAA-----

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB

Motif ID: UP00133
Motif name: Cdx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.0156625

Alignment:
DVVGGYMATAAAAHKH
-------ATAAAA---

Original motif Reverse complement motif
Consensus sequence: DVVGGYMATAAAAHKH Consensus sequence: HRHTTTTATYMCCVBD

Motif ID: UP00213
Motif name: Hoxa9
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0225404

Alignment:
WDTAWTTTWATGKCCGD
-----TTTTAT------

Original motif Reverse complement motif
Consensus sequence: DCGGYCATWAAAWTADW Consensus sequence: WDTAWTTTWATGKCCGD

Motif ID: UP00217
Motif name: Hoxa10
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0259142

Alignment:
WDDATTTTATTMCBHD
----TTTTAT------

Original motif Reverse complement motif
Consensus sequence: DHBGYAATAAAATDHW Consensus sequence: WDDATTTTATTMCBHD

Motif ID: UP00240
Motif name: Cdx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.026022

Alignment:
DDVGGTMATAAAABKH
-------ATAAAA---

Original motif Reverse complement motif
Consensus sequence: DDVGGTMATAAAABKH Consensus sequence: HRVTTTTATYACCBDD

Motif ID: UP00173
Motif name: Hoxc13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 6
Similarity score: 0.033825

Alignment:
HHDBCTCRTAAAAWHD
-------ATAAAA---

Original motif Reverse complement motif
Consensus sequence: HHDBCTCRTAAAAWHD Consensus sequence: DHWTTTTAMGAGBDHH

Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0353549

Alignment:
DDDYCCTTTGATCTDDV
------TTTTAT-----

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD

Dataset #: 3 Motif ID: 22 Motif name: Zfx

Original motif Reverse complement motif
Consensus sequence: BBVGCCBVGGCCTV Consensus sequence: VAGGCCBBGGCVBB

Best Matches for Motif ID 22 (Highest to Lowest)

Motif ID: UP00005
Motif name: Tcfap2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0596136

Alignment:
HHRCCBBWGGDCDB
BBVGCCBVGGCCTV

Original motif Reverse complement motif
Consensus sequence: HHRCCBBWGGDCDB Consensus sequence: BDGHCCWBVGGKDH

Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0603516

Alignment:
ABBBBVVRGACCACCCACRDBBM
BBVGCCBVGGCCTV---------

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0604694

Alignment:
BDHHMCGCCCCCTHVBB
---VAGGCCBBGGCVBB

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0606067

Alignment:
HBDRCCMCGCCCHHHD
BBVGCCBVGGCCTV--

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 14
Similarity score: 0.0606878

Alignment:
HVGVSAGGAGGGTCYHHHHYVH
--------VAGGCCBBGGCVBB

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH

Motif ID: UP00087
Motif name: Tcfap2c_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0608063

Alignment:
HWGCCCTDGGGCDB
VAGGCCBBGGCVBB

Original motif Reverse complement motif
Consensus sequence: BHGCCCDAGGGCWD Consensus sequence: HWGCCCTDGGGCDB

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 14
Similarity score: 0.0615001

Alignment:
DVTTVVCVYGGHGGYCHHDMYB
----BBVGCCBVGGCCTV----

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH

Motif ID: UP00010
Motif name: Tcfap2b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0624288

Alignment:
HHKGCCYSRGGCWAD
-BBVGCCBVGGCCTV

Original motif Reverse complement motif
Consensus sequence: DTWGCCKSMGGCRHH Consensus sequence: HHKGCCYSRGGCWAD

Motif ID: UP00082
Motif name: Zfp187_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0627664

Alignment:
VHMDGGACVAGGRCDH
VAGGCCBBGGCVBB--

Original motif Reverse complement motif
Consensus sequence: DDGMCCTBGTCCHYHV Consensus sequence: VHMDGGACVAGGRCDH

Motif ID: UP00009
Motif name: Nr2f2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0636529

Alignment:
HVBVTGACCCSGBVBV
--VAGGCCBBGGCVBB

Original motif Reverse complement motif
Consensus sequence: VBVBCSGGGTCAVBBH Consensus sequence: HVBVTGACCCSGBVBV

Dataset #: 3 Motif ID: 23 Motif name: Egr1

Original motif Reverse complement motif
Consensus sequence: HGCGTGGGCGK Consensus sequence: YCGCCCACGCH

Best Matches for Motif ID 23 (Highest to Lowest)

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 11
Similarity score: 0

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
------HGCGTGGGCGK------

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.00727533

Alignment:
HCCGCCCCCGCAHB
-YCGCCCACGCH--

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 11
Similarity score: 0.0262579

Alignment:
MHHHWHYTMCCHCCCACVAABVH
---------YCGCCCACGCH---

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY

Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0297053

Alignment:
YBVDMGTGGGTGGTCKVVBVBBT
--HGCGTGGGCGK----------

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0318144

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
----HGCGTGGGCGK--------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0345009

Alignment:
BVVHAGGGGGCGRDHHB
--HGCGTGGGCGK----

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0353502

Alignment:
BTBVTCVTGGGTGGTCMVVDVBB
---HGCGTGGGCGK---------

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0360229

Alignment:
BHHDTCCCACTCBDBV
--YCGCCCACGCH---

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 11
Similarity score: 0.0362743

Alignment:
VYWVVHCRCCACMCACGAHSBHH
--------YCGCCCACGCH----

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0386944

Alignment:
HDYTTGCACACGDHBH
---YCGCCCACGCH--

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH

Dataset #: 3 Motif ID: 24 Motif name: SP1

Original motif Reverse complement motif
Consensus sequence: CCCCKCCCCC Consensus sequence: GGGGGYGGGG

Best Matches for Motif ID 24 (Highest to Lowest)

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0231018

Alignment:
DBCCCCCCCCCCMYC
--CCCCKCCCCC---

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0303207

Alignment:
HBDRCCMCGCCCHHHD
----CCCCKCCCCC--

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0323007

Alignment:
HHHHDGGGGCGGDBHDV
----GGGGGYGGGG---

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0340973

Alignment:
HVDVGGGHGGGGDBHB
--GGGGGYGGGG----

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0351051

Alignment:
BHHHWGGGGCGGBBVH
----GGGGGYGGGG--

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 10
Similarity score: 0.0390437

Alignment:
HDBABCGBKRGYGGCGMSBHAK
------GGGGGYGGGG------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.0393358

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
-------GGGGGYGGGG------

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0413863

Alignment:
DHHBCCCCGCCAHHBHB
----CCCCKCCCCC---

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0418947

Alignment:
HVBCCCCCCCCMHHHB
---CCCCKCCCCC---

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.0420708

Alignment:
BDHHMCGCCCCCTHVBB
--CCCCKCCCCC-----

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Dataset #: 3 Motif ID: 25 Motif name: TFAP2A

Original motif Reverse complement motif
Consensus sequence: GCCBBVRGS Consensus sequence: SCMVBBGGC

Best Matches for Motif ID 25 (Highest to Lowest)

Motif ID: UP00010
Motif name: Tcfap2b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 9
Similarity score: 0.0115546

Alignment:
HHKGCCYSRGGCWAD
---GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: DTWGCCKSMGGCRHH Consensus sequence: HHKGCCYSRGGCWAD

Motif ID: UP00010
Motif name: Tcfap2b_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 9
Similarity score: 0.0150447

Alignment:
DYGCCYBARGGCAH
--GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: DYGCCYBARGGCAH Consensus sequence: HTGCCMTVKGGCMD

Motif ID: UP00005
Motif name: Tcfap2a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 9
Similarity score: 0.0151527

Alignment:
WDHSCCYSRGGSRAD
---GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: WDHSCCYSRGGSRAD Consensus sequence: DTMSCCKSMGGSHDW

Motif ID: UP00087
Motif name: Tcfap2c_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 9
Similarity score: 0.016909

Alignment:
WHHSCCYSRGGSDAD
---GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: WHHSCCYSRGGSDAD Consensus sequence: DTHSCCKSMGGSHHW

Motif ID: UP00087
Motif name: Tcfap2c_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 9
Similarity score: 0.0170259

Alignment:
BHGCCCDAGGGCWD
--GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: BHGCCCDAGGGCWD Consensus sequence: HWGCCCTDGGGCDB

Motif ID: UP00028
Motif name: Tcfap2e_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 9
Similarity score: 0.0198854

Alignment:
HHHGCCTSAGGCDAD
---GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: HHHGCCTSAGGCDAD Consensus sequence: DTHGCCTSAGGCHHH

Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 9
Similarity score: 0.0203681

Alignment:
BHBHDTGGCGGGGBDHD
SCMVBBGGC--------

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD

Motif ID: UP00003
Motif name: E2F3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 9
Similarity score: 0.0217064

Alignment:
BBBDYTGGCGCCKWDBD
SCMVBBGGC--------

Original motif Reverse complement motif
Consensus sequence: HBHWYGGCGCCAMDVBB Consensus sequence: BBBDYTGGCGCCKWDBD

Motif ID: UP00005
Motif name: Tcfap2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 9
Similarity score: 0.0234775

Alignment:
HHRCCBBWGGDCDB
--GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: HHRCCBBWGGDCDB Consensus sequence: BDGHCCWBVGGKDH

Motif ID: UP00093
Motif name: Klf7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 9
Similarity score: 0.026642

Alignment:
VVDBATACGCCCHAHHD
--------GCCBBVRGS

Original motif Reverse complement motif
Consensus sequence: VVDBATACGCCCHAHHD Consensus sequence: DHDTHGGGCGTATBHBB

Dataset #: 3 Motif ID: 26 Motif name: MIZF

Original motif Reverse complement motif
Consensus sequence: BAACGTCCGC Consensus sequence: GCGGACGTTV

Best Matches for Motif ID 26 (Highest to Lowest)

Motif ID: UP00419
Motif name: Spic
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0

Alignment:
DWACTTCCRCTTTB
BAACGTCCGC----

Original motif Reverse complement motif
Consensus sequence: VAAAGMGGAAGTWD Consensus sequence: DWACTTCCRCTTTB

Motif ID: UP00409
Motif name: Elf5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.00379999

Alignment:
BWAHSMGGAAGTWD
BAACGTCCGC----

Original motif Reverse complement motif
Consensus sequence: BWAHSMGGAAGTWD Consensus sequence: DWACTTCCRSDTWV

Motif ID: UP00413
Motif name: Elf4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0124101

Alignment:
DBBHACTTCCGGKWTH
--BAACGTCCGC----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGKWTH Consensus sequence: HAWYCCGGAAGTHBBD

Motif ID: UP00404
Motif name: Elf2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0128348

Alignment:
DBBHACTTCCGGDWDB
--BAACGTCCGC----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGDWDB Consensus sequence: BDWDCCGGAAGTHBBD

Motif ID: UP00085
Motif name: Sfpi1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0141516

Alignment:
HDACTTCCBCWTDV
BAACGTCCGC----

Original motif Reverse complement motif
Consensus sequence: BDAWGVGGAAGTDH Consensus sequence: HDACTTCCBCWTDV

Motif ID: UP00423
Motif name: Gm5454
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0144665

Alignment:
DVHACCGGAAGTHDDV
----GCGGACGTTV--

Original motif Reverse complement motif
Consensus sequence: VDHHACTTCCGGTHVH Consensus sequence: DVHACCGGAAGTHDDV

Motif ID: UP00412
Motif name: Etv5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0155825

Alignment:
DHHACCGGAWGTTDDV
----GCGGACGTTV--

Original motif Reverse complement motif
Consensus sequence: VDHAACWTCCGGTHHH Consensus sequence: DHHACCGGAWGTTDDV

Motif ID: UP00015
Motif name: Ehf_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0162018

Alignment:
VBDABCCGGAAGTDD
-----GCGGACGTTV

Original motif Reverse complement motif
Consensus sequence: VBDABCCGGAAGTDD Consensus sequence: DDACTTCCGGBTHBB

Motif ID: UP00418
Motif name: Etv6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0171234

Alignment:
DVHBTACTTCCGGHTHB
---BAACGTCCGC----

Original motif Reverse complement motif
Consensus sequence: DVHBTACTTCCGGHTHB Consensus sequence: BHAHCCGGAAGTABDVD

Motif ID: UP00421
Motif name: Etv1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0184147

Alignment:
MVHBACCGGAAGTVDVH
-----GCGGACGTTV--

Original motif Reverse complement motif
Consensus sequence: MVHBACCGGAAGTVDVH Consensus sequence: HBDBACTTCCGGTBHVY

Dataset #: 3 Motif ID: 27 Motif name: Klf4

Original motif Reverse complement motif
Consensus sequence: DGGGYGKGGC Consensus sequence: GCCYCMCCCD

Best Matches for Motif ID 27 (Highest to Lowest)

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0

Alignment:
DHHDGGGCGRGGKHBH
---DGGGYGKGGC---

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0153308

Alignment:
DBCCCCCCCCCCMYC
---GCCYCMCCCD--

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00002
Motif name: Sp4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0186791

Alignment:
BDWAGGCGTGBCHHD
--DGGGYGKGGC---

Original motif Reverse complement motif
Consensus sequence: BDWAGGCGTGBCHHD Consensus sequence: HHDGBCACGCCTWDB

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0218399

Alignment:
HVBCCCCCCCCMHHHB
--GCCYCMCCCD----

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0249586

Alignment:
HCCGCCCCCGCAHB
GCCYCMCCCD----

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0299159

Alignment:
BVVHAGGGGGCGRDHHB
------DGGGYGKGGC-

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0308595

Alignment:
BHBHDTGGCGGGGBDHD
----DGGGYGKGGC---

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD

Motif ID: UP00047
Motif name: Zbtb7b_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0345891

Alignment:
VHWTTHGGGGGGVDD
GCCYCMCCCD-----

Original motif Reverse complement motif
Consensus sequence: DDVCCCCCCHAAWHB Consensus sequence: VHWTTHGGGGGGVDD

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0346735

Alignment:
HBBBCCGCCCCWHHHV
--GCCYCMCCCD----

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 10
Similarity score: 0.0351496

Alignment:
MHHHWHYTMCCHCCCACVAABVH
------GCCYCMCCCD-------

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY

Dataset #: 3 Motif ID: 28 Motif name: E2F1

Original motif Reverse complement motif
Consensus sequence: TTTSGCGC Consensus sequence: GCGCSAAA

Best Matches for Motif ID 28 (Highest to Lowest)

Motif ID: UP00001
Motif name: E2F2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0

Alignment:
BBBDTTGGCGCCKWVVD
---TTTSGCGC------

Original motif Reverse complement motif
Consensus sequence: HVBWYGGCGCCAADVBB Consensus sequence: BBBDTTGGCGCCKWVVD

Motif ID: UP00003
Motif name: E2F3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00182028

Alignment:
HBHWYGGCGCCAMDVBB
------GCGCSAAA---

Original motif Reverse complement motif
Consensus sequence: HBHWYGGCGCCAMDVBB Consensus sequence: BBBDYTGGCGCCKWDBD

Motif ID: UP00072
Motif name: IRC900814_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0237639

Alignment:
DDHTACGACAAAWDDB
----GCGCSAAA----

Original motif Reverse complement motif
Consensus sequence: DDHTACGACAAAWDDB Consensus sequence: BHDWTTTGTCGTAHDD

Motif ID: UP00003
Motif name: E2F3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0275636

Alignment:
WHSGCGCGCCHTDHB
-----GCGCSAAA--

Original motif Reverse complement motif
Consensus sequence: VHDADGGCGCGCSHW Consensus sequence: WHSGCGCGCCHTDHB

Motif ID: UP00065
Motif name: Zfp161_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.028109

Alignment:
DMMDGMGCGCGCGCHD
--------GCGCSAAA

Original motif Reverse complement motif
Consensus sequence: DDGCGCGCGCRCHYRD Consensus sequence: DMMDGMGCGCGCGCHD

Motif ID: UP00001
Motif name: E2F2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0296302

Alignment:
HHVGCGCGCCKTDHB
-----GCGCSAAA--

Original motif Reverse complement motif
Consensus sequence: VHDARGGCGCGCVHH Consensus sequence: HHVGCGCGCCKTDHB

Motif ID: UP00068
Motif name: Eomes_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0348969

Alignment:
BVHDAGGTGTGAAAHHH
------GCGCSAAA---

Original motif Reverse complement motif
Consensus sequence: BVHDAGGTGTGAAAHHH Consensus sequence: HHHTTTCACACCTDHBV

Motif ID: UP00011
Motif name: Irf6_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0368278

Alignment:
DHDBTKGTTTCGHTHDD
-------TTTSGCGC--

Original motif Reverse complement motif
Consensus sequence: HDDAHCGAAACYAVDDD Consensus sequence: DHDBTKGTTTCGHTHDD

Motif ID: UP00049
Motif name: Sp100_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0383813

Alignment:
DWTTTCCGHHWAWD
-----GCGCSAAA-

Original motif Reverse complement motif
Consensus sequence: DWTWHHCGGAAAWD Consensus sequence: DWTTTCCGHHWAWD

Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.0406002

Alignment:
TCDAMVBGACGCMAKDDDVBBD
--------GCGCSAAA------

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD

Dataset #: 3 Motif ID: 29 Motif name: HIF1AARNT

Original motif Reverse complement motif
Consensus sequence: VBACGTGV Consensus sequence: VCACGTBV

Best Matches for Motif ID 29 (Highest to Lowest)

Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0

Alignment:
HDYTTGCACACGDHBH
-------VCACGTBV-

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH

Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.000574345

Alignment:
HHVBABCACGTGSTHD
-----VCACGTBV---

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 8
Similarity score: 0.00642455

Alignment:
YDYBDHTMCACGTGGADDBMDGT
-------VBACGTGV--------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM

Motif ID: UP00084
Motif name: Gmeb1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0131171

Alignment:
BVVDVRYACGTRYVBHB
-----VBACGTGV----

Original motif Reverse complement motif
Consensus sequence: BHBBKKACGTMMVDBVB Consensus sequence: BVVDVRYACGTRYVBHB

Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.014006

Alignment:
RDHDBVDTCACGTGASBHVHDH
-------VCACGTBV-------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM

Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0184296

Alignment:
VBHHVCAGGTGCDVDHD
----VBACGTGV-----

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB

Motif ID: UP00068
Motif name: Eomes_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0188154

Alignment:
VVBVCKACACCTHVBV
------VCACGTBV--

Original motif Reverse complement motif
Consensus sequence: VBVDAGGTGTYGVBBV Consensus sequence: VVBVCKACACCTHVBV

Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 8
Similarity score: 0.0189568

Alignment:
DHVDTGTGCACAYAHDH
-VBACGTGV--------

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD

Motif ID: UP00042
Motif name: Gm397_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.0198987

Alignment:
HHRTATGTGCACATHHD
--VBACGTGV-------

Original motif Reverse complement motif
Consensus sequence: HHDATGTGCACATAMDH Consensus sequence: HHRTATGTGCACATHHD

Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.021967

Alignment:
BBGHCACGCGACDD
---VCACGTBV---

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB

Dataset #: 3 Motif ID: 30 Motif name: PLAG1

Original motif Reverse complement motif
Consensus sequence: GGGGCCCAAGGGGG Consensus sequence: CCCCCTTGGGCCCC

Best Matches for Motif ID 30 (Highest to Lowest)

Motif ID: UP00102
Motif name: Zic1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0499525

Alignment:
CCCCCCCGGGGGHB
CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: BHCCCCCGGGGGGG Consensus sequence: CCCCCCCGGGGGHB

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0540613

Alignment:
BBBDVVRGACCACCCAVGABBAB
---------CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Motif ID: UP00057
Motif name: Zic2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0548411

Alignment:
VCCCCCCCGGGGGRB
-CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: BMCCCCCGGGGGGGB Consensus sequence: VCCCCCCCGGGGGRB

Motif ID: UP00005
Motif name: Tcfap2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0556785

Alignment:
HHRCCBBWGGDCDB
GGGGCCCAAGGGGG

Original motif Reverse complement motif
Consensus sequence: HHRCCBBWGGDCDB Consensus sequence: BDGHCCWBVGGKDH

Motif ID: UP00006
Motif name: Zic3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.056976

Alignment:
VCCCCCCCGGGGGRB
-CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: BMCCCCCGGGGGGGB Consensus sequence: VCCCCCCCGGGGGRB

Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 14
Similarity score: 0.0573495

Alignment:
HDGHHBHRGACCACCCGSVDVG
CCCCCTTGGGCCCC--------

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 14
Similarity score: 0.0579022

Alignment:
VMYDHDGMCCHCCKBGVVAAVH
--------CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH

Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 14
Similarity score: 0.0580662

Alignment:
DVMHHDHKGACCCTCCTSVCBH
CCCCCTTGGGCCCC--------

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0597453

Alignment:
HGDHVHKGACCACCCGGBGBGDB
---------CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0598088

Alignment:
DBCCCCCCCCCCMYC
-CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Dataset #: 3 Motif ID: 31 Motif name: Pax5

Original motif Reverse complement motif
Consensus sequence: DGVBCABTGDWGCGKRRCSR Consensus sequence: MSGKKRCGCWDCABTGBBCD

Best Matches for Motif ID 31 (Highest to Lowest)

Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 20
Similarity score: 0.0499537

Alignment:
DDRMHBACGCGYGCGTDGBBDB
-DGVBCABTGDWGCGKRRCSR-

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD

Motif ID: UP00526
Motif name: Foxn1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 20
Similarity score: 0.0520196

Alignment:
WHVBVVMACGCGCGTCDYHWDH
DGVBCABTGDWGCGKRRCSR--

Original motif Reverse complement motif
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Consensus sequence: HDWHMHGACGCGCGTRBVVBHW

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 20
Similarity score: 0.0542764

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-DGVBCABTGDWGCGKRRCSR-

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 20
Similarity score: 0.0560636

Alignment:
DCATDBTGHGCATKMTTBRSWR
--MSGKKRCGCWDCABTGBBCD

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 20
Similarity score: 0.0595671

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
DGVBCABTGDWGCGKRRCSR---

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00528
Motif name: Foxm1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 20
Similarity score: 0.0602559

Alignment:
HADTBVADGATGCATCMTGMVHB
DGVBCABTGDWGCGKRRCSR---

Original motif Reverse complement motif
Consensus sequence: HADTBVADGATGCATCMTGMVHB Consensus sequence: VHVRCAYGATGCATCDTVVADTH

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 20
Similarity score: 0.0607506

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
DGVBCABTGDWGCGKRRCSR---

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 20
Similarity score: 0.0611227

Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
MSGKKRCGCWDCABTGBBCD---

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 20
Similarity score: 0.0611361

Alignment:
RDHDBVDTCACGTGASBHVHDH
--MSGKKRCGCWDCABTGBBCD

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 20
Similarity score: 0.061403

Alignment:
GTVBDAATTGTVTGHGDDHKVB
DGVBCABTGDWGCGKRRCSR--

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Dataset #: 3 Motif ID: 32 Motif name: ArntAhr

Original motif Reverse complement motif
Consensus sequence: YGCGTG Consensus sequence: CACGCM

Best Matches for Motif ID 32 (Highest to Lowest)

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
------YGCGTG-----------

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00002
Motif name: Sp4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.00183587

Alignment:
HHDGBCACGCCTWDB
-----CACGCM----

Original motif Reverse complement motif
Consensus sequence: BDWAGGCGTGBCHHD Consensus sequence: HHDGBCACGCCTWDB

Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.00348048

Alignment:
HDGTCGCGTGDCVB
----YGCGTG----

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB

Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 6
Similarity score: 0.00526158

Alignment:
TCDAMVBGACGCMAKDDDVBBD
-------CACGCM---------

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.00558171

Alignment:
HBGYGTGTGTGCVRVD
---YGCGTG-------

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD

Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.00702416

Alignment:
HDYTTGCACACGDHBH
--------CACGCM--

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH

Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 6
Similarity score: 0.0123233

Alignment:
DDRMHBACGCGYGCGTDGBBDB
-------YGCGTG---------

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD

Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0141579

Alignment:
HCCGCCCCCGCAHB
------CACGCM--

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 6
Similarity score: 0.0144485

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
-------YGCGTG----------

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 6
Similarity score: 0.0172109

Alignment:
VHYTCCDWCCGCGTCMMTHWHV
---------YGCGTG-------

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Dataset #: 3 Motif ID: 33 Motif name: Mycn

Original motif Reverse complement motif
Consensus sequence: HSCACGTGGC Consensus sequence: GCCACGTGSD

Best Matches for Motif ID 33 (Highest to Lowest)

Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0

Alignment:
DDASCACGTGBTBVDD
--HSCACGTGGC----

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.00783793

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
-------GCCACGTGSD------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM

Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.0132858

Alignment:
DDHBHBSTCACGTGAHBBDHHM
------GCCACGTGSD------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM

Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0227933

Alignment:
VBHHVCAGGTGCDVDHD
---GCCACGTGSD----

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB

Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0257011

Alignment:
BBGHCACGCGACDD
--HSCACGTGGC--

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB

Motif ID: UP00165
Motif name: Titf1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0344833

Alignment:
BVABCCACTTGAMHTT
---GCCACGTGSD---

Original motif Reverse complement motif
Consensus sequence: BVABCCACTTGAMHTT Consensus sequence: AAHYTCAAGTGGBTBV

Motif ID: UP00231
Motif name: Nkx2-2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.035228

Alignment:
HDVRCCACTTGARADBD
---GCCACGTGSD----

Original motif Reverse complement motif
Consensus sequence: HDVRCCACTTGARADBD Consensus sequence: DVDTKTCAAGTGGKBDH

Motif ID: UP00084
Motif name: Gmeb1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0358581

Alignment:
BVVDVRYACGTRYVBHB
----GCCACGTGSD---

Original motif Reverse complement motif
Consensus sequence: BHBBKKACGTMMVDBVB Consensus sequence: BVVDVRYACGTRYVBHB

Motif ID: UP00084
Motif name: Gmeb1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.03725

Alignment:
HHMACKACGTMGBVCD
---HSCACGTGGC---

Original motif Reverse complement motif
Consensus sequence: DGVBCRACGTYGTYHH Consensus sequence: HHMACKACGTMGBVCD

Motif ID: UP00526
Motif name: Foxn1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 10
Similarity score: 0.0383187

Alignment:
WHVBVVMACGCGCGTCDYHWDH
------HSCACGTGGC------

Original motif Reverse complement motif
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Consensus sequence: HDWHMHGACGCGCGTRBVVBHW

Dataset #: 3 Motif ID: 34 Motif name: Myc

Original motif Reverse complement motif
Consensus sequence: VGCACGTGGH Consensus sequence: DCCACGTGCV

Best Matches for Motif ID 34 (Highest to Lowest)

Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0

Alignment:
DDASCACGTGBTBVDD
--VGCACGTGGH----

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 10
Similarity score: 0.00631885

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
-------DCCACGTGCV------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM

Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.00821668

Alignment:
DDHBHBSTCACGTGAHBBDHHM
------DCCACGTGCV------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM

Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0140005

Alignment:
DHDBHGCACCTGBDDVB
----VGCACGTGGH---

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB

Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0308912

Alignment:
BBGHCACGCGACDD
--VGCACGTGGH--

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB

Motif ID: UP00165
Motif name: Titf1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0311723

Alignment:
BVABCCACTTGAMHTT
---DCCACGTGCV---

Original motif Reverse complement motif
Consensus sequence: BVABCCACTTGAMHTT Consensus sequence: AAHYTCAAGTGGBTBV

Motif ID: UP00249
Motif name: Nkx2-5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.031308

Alignment:
HDADCCACTTRAAWTT
---DCCACGTGCV---

Original motif Reverse complement motif
Consensus sequence: HDADCCACTTRAAWTT Consensus sequence: AAWTTMAAGTGGHTDH

Motif ID: UP00231
Motif name: Nkx2-2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0334845

Alignment:
HDVRCCACTTGARADBD
---DCCACGTGCV----

Original motif Reverse complement motif
Consensus sequence: HDVRCCACTTGARADBD Consensus sequence: DVDTKTCAAGTGGKBDH

Motif ID: UP00147
Motif name: Nkx2-6
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0345548

Alignment:
DDADCCACTTAAVHTT
---DCCACGTGCV---

Original motif Reverse complement motif
Consensus sequence: DDADCCACTTAAVHTT Consensus sequence: AAHVTTAAGTGGHTDD

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0363818

Alignment:
VDWDARRGACGCGGWHGGAKHV
-----VGCACGTGGH-------

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Dataset #: 3 Motif ID: 35 Motif name: GABPA

Original motif Reverse complement motif
Consensus sequence: CCGGAAGTGVV Consensus sequence: VVCACTTCCGG

Best Matches for Motif ID 35 (Highest to Lowest)

Motif ID: UP00013
Motif name: Gabpa_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0

Alignment:
BHHHACTTCCGGTHHBD
-VVCACTTCCGG-----

Original motif Reverse complement motif
Consensus sequence: HVHHACCGGAAGTDHHV Consensus sequence: BHHHACTTCCGGTHHBD

Motif ID: UP00410
Motif name: Elk1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.000136484

Alignment:
VVHBACCGGAAGTDBHD
-----CCGGAAGTGVV-

Original motif Reverse complement motif
Consensus sequence: VVHBACCGGAAGTDBHD Consensus sequence: DHBDACTTCCGGTVHVB

Motif ID: UP00420
Motif name: Elk3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.000219706

Alignment:
DVBBACCGGAAGYDVVV
-----CCGGAAGTGVV-

Original motif Reverse complement motif
Consensus sequence: DVBBACCGGAAGYDVVV Consensus sequence: VBVDMCTTCCGGTVBVD

Motif ID: UP00421
Motif name: Etv1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.000932023

Alignment:
MVHBACCGGAAGTVDVH
-----CCGGAAGTGVV-

Original motif Reverse complement motif
Consensus sequence: MVHBACCGGAAGTVDVH Consensus sequence: HBDBACTTCCGGTBHVY

Motif ID: UP00404
Motif name: Elf2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.00527483

Alignment:
DBBHACTTCCGGDWDB
-VVCACTTCCGG----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGDWDB Consensus sequence: BDWDCCGGAAGTHBBD

Motif ID: UP00414
Motif name: Ets1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.00805613

Alignment:
BDDDHACCGGAARTVDD
------CCGGAAGTGVV

Original motif Reverse complement motif
Consensus sequence: BDDDHACCGGAARTVDD Consensus sequence: DDBAMTTCCGGTDHDHB

Motif ID: UP00423
Motif name: Gm5454
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.00933976

Alignment:
VDHHACTTCCGGTHVH
-VVCACTTCCGG----

Original motif Reverse complement motif
Consensus sequence: VDHHACTTCCGGTHVH Consensus sequence: DVHACCGGAAGTHDDV

Motif ID: UP00413
Motif name: Elf4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.00992792

Alignment:
DBBHACTTCCGGKWTH
-VVCACTTCCGG----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGKWTH Consensus sequence: HAWYCCGGAAGTHBBD

Motif ID: UP00418
Motif name: Etv6
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0114183

Alignment:
DVHBTACTTCCGGHTHB
--VVCACTTCCGG----

Original motif Reverse complement motif
Consensus sequence: DVHBTACTTCCGGHTHB Consensus sequence: BHAHCCGGAAGTABDVD

Motif ID: UP00411
Motif name: Erg
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0122484

Alignment:
BDDACCGGAAKTVBVB
----CCGGAAGTGVV-

Original motif Reverse complement motif
Consensus sequence: VBBVAYTTCCGGTDDB Consensus sequence: BDDACCGGAAKTVBVB

Dataset #: 4 Motif ID: 36 Motif name: csGCCCCGCCCCsc

Original motif Reverse complement motif
Consensus sequence: HVGCCCCGCCCCBB Consensus sequence: BBGGGGCGGGGCVD

Best Matches for Motif ID 36 (Highest to Lowest)

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0

Alignment:
HBDRCCMCGCCCHHHD
-HVGCCCCGCCCCBB-

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0106621

Alignment:
DHHBCCCCGCCAHHBHB
-HVGCCCCGCCCCBB--

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.017761

Alignment:
GKRGGGGGGGGGGBD
BBGGGGCGGGGCVD-

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0181905

Alignment:
HVBCCCCCCCCMHHHB
HVGCCCCGCCCCBB--

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0225788

Alignment:
BHHBHCCGCCCCDHHHH
HVGCCCCGCCCCBB---

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00002
Motif name: Sp4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0277585

Alignment:
BDWAGGCGTGBCHHD
BBGGGGCGGGGCVD-

Original motif Reverse complement motif
Consensus sequence: BDWAGGCGTGBCHHD Consensus sequence: HHDGBCACGCCTWDB

Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0318885

Alignment:
BHHDTCCCACTCBDBV
-HVGCCCCGCCCCBB-

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV

Motif ID: UP00024
Motif name: Glis2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0330753

Alignment:
HKBBGGGGGGTCVHHH
BBGGGGCGGGGCVD--

Original motif Reverse complement motif
Consensus sequence: HHHVGACCCCCCVBRD Consensus sequence: HKBBGGGGGGTCVHHH

Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 14
Similarity score: 0.0334003

Alignment:
CVHBSCGGGTGGTCMHVHHCDH
---BBGGGGCGGGGCVD-----

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH

Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0351614

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
---BBGGGGCGGGGCVD-----

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH

Dataset #: 4 Motif ID: 37 Motif name: tkAAATAATAtw

Original motif Reverse complement motif
Consensus sequence: HDAAATAATAHW Consensus sequence: WHTATTATTTDH

Best Matches for Motif ID 37 (Highest to Lowest)

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.00353196

Alignment:
HDDDATTTTATTKVRDB
---WHTATTATTTDH--

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB

Motif ID: UP00244
Motif name: Tlx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.00646023

Alignment:
WWDTTATTAATTHATTV
--WHTATTATTTDH---

Original motif Reverse complement motif
Consensus sequence: BAATHAATTAATAAHWW Consensus sequence: WWDTTATTAATTHATTV

Motif ID: UP00051
Motif name: Sox8_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.0120674

Alignment:
DDDHDAACAATWBATDD
--HDAAATAATAHW---

Original motif Reverse complement motif
Consensus sequence: DDATBWATTGTTHHDDD Consensus sequence: DDDHDAACAATWBATDD

Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0123772

Alignment:
HDHHTTTTATTKKHDD
--WHTATTATTTDH--

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD

Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0129559

Alignment:
HHHTTRTTDTTTKDH
--WHTATTATTTDH-

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH

Motif ID: UP00064
Motif name: Sox18_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0130138

Alignment:
HHDHABAACAATHBWV
---HDAAATAATAHW-

Original motif Reverse complement motif
Consensus sequence: BWBHATTGTTBTHDHH Consensus sequence: HHDHABAACAATHBWV

Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0131034

Alignment:
HARTHAATTAWTAVDHD
---HDAAATAATAHW--

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH

Motif ID: UP00024
Motif name: Glis2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0140433

Alignment:
BVTTTAHTAATADH
WHTATTATTTDH--

Original motif Reverse complement motif
Consensus sequence: HDTATTAHTAAAVV Consensus sequence: BVTTTAHTAATADH

Motif ID: UP00075
Motif name: Sox15_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0143532

Alignment:
DHVKMWATTGTTHDHDH
---WHTATTATTTDH--

Original motif Reverse complement motif
Consensus sequence: HDDDDAACAATWRRBHD Consensus sequence: DHVKMWATTGTTHDHDH

Motif ID: UP00096
Motif name: Sox13_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.014607

Alignment:
DHDRGAACAATWWDHW
--HDAAATAATAHW--

Original motif Reverse complement motif
Consensus sequence: DHDRGAACAATWWDHW Consensus sequence: WHDWWATTGTTCKDHD

Dataset #: 4 Motif ID: 38 Motif name: cccGCCCCGCCCCsb

Original motif Reverse complement motif
Consensus sequence: BCCGCCCCGCCCCBB Consensus sequence: BBGGGGCGGGGCGGB

Best Matches for Motif ID 38 (Highest to Lowest)

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.00481788

Alignment:
HBDRCCMCGCCCHHHD
BCCGCCCCGCCCCBB-

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0108117

Alignment:
DHHBCCCCGCCAHHBHB
BCCGCCCCGCCCCBB--

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0154152

Alignment:
GKRGGGGGGGGGGBD
BBGGGGCGGGGCGGB

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.018287

Alignment:
HVBCCCCCCCCMHHHB
BCCGCCCCGCCCCBB-

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00002
Motif name: Sp4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0247447

Alignment:
BDWAGGCGTGBCHHD
BBGGGGCGGGGCGGB

Original motif Reverse complement motif
Consensus sequence: BDWAGGCGTGBCHHD Consensus sequence: HHDGBCACGCCTWDB

Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0279869

Alignment:
BHHDTCCCACTCBDBV
BCCGCCCCGCCCCBB-

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV

Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 15
Similarity score: 0.0312526

Alignment:
CVHBSCGGGTGGTCMHVHHCDH
---BBGGGGCGGGGCGGB----

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH

Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0318321

Alignment:
BHVDCCCCDCCCBDBH
BCCGCCCCGCCCCBB-

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 15
Similarity score: 0.0340857

Alignment:
VHYTCCDWCCGCGTCMMTHWHV
----BCCGCCCCGCCCCBB---

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 15
Similarity score: 0.0345185

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
---BBGGGGCGGGGCGGB----

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH

Dataset #: 4 Motif ID: 39 Motif name: kCAGCCAATmr

Original motif Reverse complement motif
Consensus sequence: DCAGCCAATVR Consensus sequence: MBATTGGCTGH

Best Matches for Motif ID 39 (Highest to Lowest)

Motif ID: UP00033
Motif name: Zfp410_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.000708728

Alignment:
BDDYYCATCCCATDDBD
----DCAGCCAATVR--

Original motif Reverse complement motif
Consensus sequence: DVDDATGGGATGKMDDV Consensus sequence: BDDYYCATCCCATDDBD

Motif ID: UP00004
Motif name: Sox14_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.00658734

Alignment:
BKBASACAATRGHBB
-DCAGCCAATVR---

Original motif Reverse complement motif
Consensus sequence: BKBASACAATRGHBB Consensus sequence: BBDCMATTGTSTBRB

Motif ID: UP00249
Motif name: Nkx2-5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.00805715

Alignment:
AAWTTMAAGTGGHTDH
-----MBATTGGCTGH

Original motif Reverse complement motif
Consensus sequence: HDADCCACTTRAAWTT Consensus sequence: AAWTTMAAGTGGHTDH

Motif ID: UP00147
Motif name: Nkx2-6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.0128272

Alignment:
DDADCCACTTAAVHTT
DCAGCCAATVR-----

Original motif Reverse complement motif
Consensus sequence: DDADCCACTTAAVHTT Consensus sequence: AAHVTTAAGTGGHTDD

Motif ID: UP00165
Motif name: Titf1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0131729

Alignment:
AAHYTCAAGTGGBTBV
-----MBATTGGCTGH

Original motif Reverse complement motif
Consensus sequence: BVABCCACTTGAMHTT Consensus sequence: AAHYTCAAGTGGBTBV

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 11
Similarity score: 0.0131873

Alignment:
HHBDHDDAACAATDRHHHHHBW
----DCAGCCAATVR-------

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00258
Motif name: Tgif2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0132199

Alignment:
AABBAGCTGTCAAWVV
-----DCAGCCAATVR

Original motif Reverse complement motif
Consensus sequence: AABBAGCTGTCAAWVV Consensus sequence: VBWTTGACAGCTVBTT

Motif ID: UP00205
Motif name: Pknox2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0138143

Alignment:
VHATTGACAGSKSVTH
MBATTGGCTGH-----

Original motif Reverse complement motif
Consensus sequence: HAVSRSCTGTCAATHB Consensus sequence: VHATTGACAGSKSVTH

Motif ID: UP00023
Motif name: Sox30_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0141895

Alignment:
HHHHMHATTGTTBDHD
----MBATTGGCTGH-

Original motif Reverse complement motif
Consensus sequence: DHDBAACAATDRHHHH Consensus sequence: HHHHMHATTGTTBDHD

Motif ID: UP00227
Motif name: Duxl
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0154208

Alignment:
YRACCCAATCAACVVHV
DCAGCCAATVR------

Original motif Reverse complement motif
Consensus sequence: YRACCCAATCAACVVHV Consensus sequence: VHVVGTTGATTGGGTMK

Dataset #: 4 Motif ID: 40 Motif name: kcACCTGCAgc

Original motif Reverse complement motif
Consensus sequence: BCACCTGCABC Consensus sequence: GBTGCAGGTGB

Best Matches for Motif ID 40 (Highest to Lowest)

Motif ID: UP00070
Motif name: Gcm1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0

Alignment:
DHDVATGCGGGTHVVH
---GBTGCAGGTGB--

Original motif Reverse complement motif
Consensus sequence: HVVHACCCGCATVDHD Consensus sequence: DHDVATGCGGGTHVVH

Motif ID: UP00031
Motif name: Zbtb3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.000503863

Alignment:
BBBAVTGCAGTGBBVDD
---GBTGCAGGTGB---

Original motif Reverse complement motif
Consensus sequence: DDBBBCACTGCABTBBB Consensus sequence: BBBAVTGCAGTGBBVDD

Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.000557448

Alignment:
DHDBHGCACCTGBDDVB
-----BCACCTGCABC-

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB

Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.00842747

Alignment:
BBYVVCAGCTGCBVHHD
----BCACCTGCABC--

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB

Motif ID: UP00420
Motif name: Elk3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0111732

Alignment:
DVBBACCGGAAGYDVVV
--BCACCTGCABC----

Original motif Reverse complement motif
Consensus sequence: DVBBACCGGAAGYDVVV Consensus sequence: VBVDMCTTCCGGTVBVD

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 11
Similarity score: 0.0122671

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
--------BCACCTGCABC----

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM

Motif ID: UP00092
Motif name: Myb_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.015733

Alignment:
BDACCAACTGCCRBBH
---BCACCTGCABC--

Original motif Reverse complement motif
Consensus sequence: BDACCAACTGCCRBBH Consensus sequence: DBVKGGCAGTTGGTHB

Motif ID: UP00236
Motif name: Irx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0163141

Alignment:
WVWDDTACATGTADDDW
---GBTGCAGGTGB---

Original motif Reverse complement motif
Consensus sequence: WDDDTACATGTADDWBW Consensus sequence: WVWDDTACATGTADDDW

Motif ID: UP00223
Motif name: Irx3_0920.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0165255

Alignment:
DDWWBTACATGTADDDD
----BCACCTGCABC--

Original motif Reverse complement motif
Consensus sequence: DDDDTACATGTAVWWHD Consensus sequence: DDWWBTACATGTADDDD

Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0169178

Alignment:
DVBCYTGCTGBGDDD
BCACCTGCABC----

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD

Dataset #: 4 Motif ID: 41 Motif name: wwAAATAATAtw

Original motif Reverse complement motif
Consensus sequence: HDAAATAATADD Consensus sequence: DDTATTATTTDH

Best Matches for Motif ID 41 (Highest to Lowest)

Motif ID: UP00244
Motif name: Tlx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.00576686

Alignment:
WWDTTATTAATTHATTV
--DDTATTATTTDH---

Original motif Reverse complement motif
Consensus sequence: BAATHAATTAATAAHWW Consensus sequence: WWDTTATTAATTHATTV

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.00673636

Alignment:
HDDDATTTTATTKVRDB
---DDTATTATTTDH--

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB

Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.00685179

Alignment:
HDHHTTTTATTKKHDD
--DDTATTATTTDH--

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD

Motif ID: UP00073
Motif name: Foxa2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0108327

Alignment:
VVDAATAACAAAVVB
HDAAATAATADD---

Original motif Reverse complement motif
Consensus sequence: VVDAATAACAAAVVB Consensus sequence: BVVTTTGTTATTDBB

Motif ID: UP00134
Motif name: Hoxb13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0121723

Alignment:
VDHWTTTTATTGGDKB
--DDTATTATTTDH--

Original motif Reverse complement motif
Consensus sequence: VRHCCAATAAAAWHHV Consensus sequence: VDHWTTTTATTGGDKB

Motif ID: UP00255
Motif name: Dbx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0133808

Alignment:
HARTHAATTAWTAVDHD
---HDAAATAATADD--

Original motif Reverse complement motif
Consensus sequence: HARTHAATTAWTAVDHD Consensus sequence: DHDBTAWTAATTHAKTH

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 12
Similarity score: 0.0144702

Alignment:
HHBDHDDAACAATDRHHHHHBW
----HDAAATAATADD------

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00051
Motif name: Sox8_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0145614

Alignment:
DDATBWATTGTTHHDDD
---DDTATTATTTDH--

Original motif Reverse complement motif
Consensus sequence: DDATBWATTGTTHHDDD Consensus sequence: DDDHDAACAATWBATDD

Motif ID: UP00024
Motif name: Glis2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0148858

Alignment:
HDTATTAHTAAAVV
--HDAAATAATADD

Original motif Reverse complement motif
Consensus sequence: HDTATTAHTAAAVV Consensus sequence: BVTTTAHTAATADH

Motif ID: UP00096
Motif name: Sox13_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.014968

Alignment:
DHDRGAACAATWWDHW
--HDAAATAATADD--

Original motif Reverse complement motif
Consensus sequence: DHDRGAACAATWWDHW Consensus sequence: WHDWWATTGTTCKDHD

Dataset #: 4 Motif ID: 42 Motif name: sSGTCACGTGACSs

Original motif Reverse complement motif
Consensus sequence: SGGTCACGTGACCS Consensus sequence: SGGTCACGTGACCS

Best Matches for Motif ID 42 (Highest to Lowest)

Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 14
Similarity score: 0

Alignment:
RDHDBVDTCACGTGASBHVHDH
----SGGTCACGTGACCS----

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM

Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0226905

Alignment:
DDASCACGTGBTBVDD
--SGGTCACGTGACCS

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD

Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0240371

Alignment:
BBGHCACGCGACDD
SGGTCACGTGACCS

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB

Motif ID: UP00103
Motif name: Jundm2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0253986

Alignment:
BBGATGACGTCAYCVH
-SGGTCACGTGACCS-

Original motif Reverse complement motif
Consensus sequence: BBGATGACGTCAYCVH Consensus sequence: HVGMTGACGTCATCBB

Motif ID: UP00020
Motif name: Atf1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0259163

Alignment:
DBDRTGACGTCAYHRD
-SGGTCACGTGACCS-

Original motif Reverse complement motif
Consensus sequence: DBDRTGACGTCAYHRD Consensus sequence: DMDMTGACGTCAKHBD

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 14
Similarity score: 0.0403911

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
-----SGGTCACGTGACCS----

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM

Motif ID: UP00036
Motif name: Myf6_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0440464

Alignment:
VVDBAACAGBTGBYHB
--SGGTCACGTGACCS

Original motif Reverse complement motif
Consensus sequence: VVDBAACAGBTGBYHB Consensus sequence: BDKVCABCTGTTBDBV

Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0471124

Alignment:
VBBDMYCATCTGVHHBH
--SGGTCACGTGACCS-

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH

Motif ID: UP00165
Motif name: Titf1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0471926

Alignment:
BVABCCACTTGAMHTT
-SGGTCACGTGACCS-

Original motif Reverse complement motif
Consensus sequence: BVABCCACTTGAMHTT Consensus sequence: AAHYTCAAGTGGBTBV

Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0506329

Alignment:
DHDBHGCACCTGBDDVB
--SGGTCACGTGACCS-

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB

Dataset #: 4 Motif ID: 43 Motif name: wsTACwGTAsw

Original motif Reverse complement motif
Consensus sequence: HVTACWGTABD Consensus sequence: DBTACWGTAVH

Best Matches for Motif ID 43 (Highest to Lowest)

Motif ID: UP00052
Motif name: Osr2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0

Alignment:
HHHHGCTACKGTHVHH
----DBTACWGTAVH-

Original motif Reverse complement motif
Consensus sequence: HHVHACRGTAGCHHHD Consensus sequence: HHHHGCTACKGTHVHH

Motif ID: UP00027
Motif name: Osr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.00480574

Alignment:
DHBHGCTACKGTHDHH
----DBTACWGTAVH-

Original motif Reverse complement motif
Consensus sequence: HHDHACRGTAGCHVHD Consensus sequence: DHBHGCTACKGTHDHH

Motif ID: UP00031
Motif name: Zbtb3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0165381

Alignment:
BBBAVTGCAGTGBBVDD
---HVTACWGTABD---

Original motif Reverse complement motif
Consensus sequence: DDBBBCACTGCABTBBB Consensus sequence: BBBAVTGCAGTGBBVDD

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 11
Similarity score: 0.0248017

Alignment:
HHBDHDDAACAATDRHHHHHBW
-----DBTACWGTAVH------

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00023
Motif name: Sox30_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0294174

Alignment:
HHHHMHATTGTTBDHD
---HVTACWGTABD--

Original motif Reverse complement motif
Consensus sequence: DHDBAACAATDRHHHH Consensus sequence: HHHHMHATTGTTBDHD

Motif ID: UP00075
Motif name: Sox15_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0301544

Alignment:
DHVKMWATTGTTHDHDH
---HVTACWGTABD---

Original motif Reverse complement motif
Consensus sequence: HDDDDAACAATWRRBHD Consensus sequence: DHVKMWATTGTTHDHDH

Motif ID: UP00016
Motif name: Sry_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0310991

Alignment:
VHVHDATTGTTMHDDDH
--DBTACWGTAVH----

Original motif Reverse complement motif
Consensus sequence: HHDHDRAACAATDDVHV Consensus sequence: VHVHDATTGTTMHDDDH

Motif ID: UP00064
Motif name: Sox18_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.031364

Alignment:
BWBHATTGTTBTHDHH
-DBTACWGTAVH----

Original motif Reverse complement motif
Consensus sequence: BWBHATTGTTBTHDHH Consensus sequence: HHDHABAACAATHBWV

Motif ID: UP00092
Motif name: Myb_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0314236

Alignment:
HDDDHAACCGTTAHHHD
---DBTACWGTAVH---

Original motif Reverse complement motif
Consensus sequence: HDDDHAACCGTTAHHHD Consensus sequence: DHHHTAACGGTTHHHDH

Motif ID: UP00071
Motif name: Sox21_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0319794

Alignment:
VVYBWATTGTTCVBHDV
--HVTACWGTABD----

Original motif Reverse complement motif
Consensus sequence: VVYBWATTGTTCVBHDV Consensus sequence: BDDBVGAACAATWBMBV

Dataset #: 4 Motif ID: 44 Motif name: dhACATTCTkh

Original motif Reverse complement motif
Consensus sequence: DHACATTCTGH Consensus sequence: HCAGAATGTHD

Best Matches for Motif ID 44 (Highest to Lowest)

Motif ID: UP00038
Motif name: Spdef_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.00581553

Alignment:
VDWYTAGGATGTHVDH
---HCAGAATGTHD--

Original motif Reverse complement motif
Consensus sequence: DDBHACATCCTAKWDV Consensus sequence: VDWYTAGGATGTHVDH

Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 11
Similarity score: 0.00582895

Alignment:
DCATDBTGHGCATKMTTBRSWR
-------DHACATTCTGH----

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR

Motif ID: UP00023
Motif name: Sox30_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.00613057

Alignment:
HHHHMHATTGTTBDHD
--DHACATTCTGH---

Original motif Reverse complement motif
Consensus sequence: DHDBAACAATDRHHHH Consensus sequence: HHHHMHATTGTTBDHD

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.0119275

Alignment:
WBHHHHHMDATTGTTHDHDVHH
-----DHACATTCTGH------

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0122803

Alignment:
HHBTMCTTTGTTMDDVH
--DHACATTCTGH----

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH

Motif ID: UP00250
Motif name: Irx5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0132772

Alignment:
WVTDHWACATGTWHDDD
----DHACATTCTGH--

Original motif Reverse complement motif
Consensus sequence: DDDHWACATGTWHDABW Consensus sequence: WVTDHWACATGTWHDDD

Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.0141401

Alignment:
DVBCYTGCTGBGDDD
----HCAGAATGTHD

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD

Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0143902

Alignment:
HHBBMCTTTGTTHDDBH
--DHACATTCTGH----

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH

Motif ID: UP00004
Motif name: Sox14_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0151959

Alignment:
BKBASACAATRGHBB
---HCAGAATGTHD-

Original motif Reverse complement motif
Consensus sequence: BKBASACAATRGHBB Consensus sequence: BBDCMATTGTSTBRB

Motif ID: UP00064
Motif name: Sox18_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.015273

Alignment:
BWBHATTGTTBTHDHH
DHACATTCTGH-----

Original motif Reverse complement motif
Consensus sequence: BWBHATTGTTBTHDHH Consensus sequence: HHDHABAACAATHBWV

Dataset #: 4 Motif ID: 45 Motif name: wbgTAAATAww

Original motif Reverse complement motif
Consensus sequence: DBGTAAATAHD Consensus sequence: DHTATTTACBD

Best Matches for Motif ID 45 (Highest to Lowest)

Motif ID: UP00242
Motif name: Hoxc8
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0

Alignment:
AHDHTAATTACHHHHV
--DHTATTTACBD---

Original motif Reverse complement motif
Consensus sequence: BHDDDGTAATTAHHDT Consensus sequence: AHDHTAATTACHHHHV

Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.00453517

Alignment:
HHWAWGTAAAYAAAVDB
---DBGTAAATAHD---

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH

Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.00490457

Alignment:
HDHADGTAAACAAAVVH
---DBGTAAATAHD---

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH

Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.00656547

Alignment:
HDHRTAAACAAAHDDD
-DBGTAAATAHD----

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH

Motif ID: UP00182
Motif name: Hoxa6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0086354

Alignment:
DTHHGGTAATTAYCYT
---DBGTAAATAHD--

Original motif Reverse complement motif
Consensus sequence: AMGKTAATTACCHHAD Consensus sequence: DTHHGGTAATTAYCYT

Motif ID: UP00260
Motif name: Hoxc6
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0092156

Alignment:
BRHVKTAATTAMBDVVD
---DHTATTTACBD---

Original motif Reverse complement motif
Consensus sequence: BRHVKTAATTAMBDVVD Consensus sequence: DBBDVYTAATTARBHKB

Motif ID: UP00164
Motif name: Hoxa7_2668.2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.00942246

Alignment:
VVHDDTAATTAHTDDBC
---DHTATTTACBD---

Original motif Reverse complement motif
Consensus sequence: VVHDDTAATTAHTDDBC Consensus sequence: GBDDAHTAATTADHHVV

Motif ID: UP00259
Motif name: Hoxb6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.00949005

Alignment:
VDVGTAATTACBDAWW
-DBGTAAATAHD----

Original motif Reverse complement motif
Consensus sequence: WWTDBGTAATTACVDB Consensus sequence: VDVGTAATTACBDAWW

Motif ID: UP00254
Motif name: Pou2f1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.00998499

Alignment:
WABKTAATTAHKHHHD
-DBGTAAATAHD----

Original motif Reverse complement motif
Consensus sequence: DHDHRHTAATTARBTW Consensus sequence: WABKTAATTAHKHHHD

Motif ID: UP00110
Motif name: Dlx4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0107458

Alignment:
GHVRGTAATTATDVVGV
--DBGTAAATAHD----

Original motif Reverse complement motif
Consensus sequence: BCVVDATAATTACMVHC Consensus sequence: GHVRGTAATTATDVVGV

Dataset #: 5 Motif ID: 46 Motif name: Zfx

Original motif Reverse complement motif
Consensus sequence: BBVGCCBVGGCCTV Consensus sequence: VAGGCCBBGGCVBB

Best Matches for Motif ID 46 (Highest to Lowest)

Motif ID: UP00005
Motif name: Tcfap2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0596136

Alignment:
HHRCCBBWGGDCDB
BBVGCCBVGGCCTV

Original motif Reverse complement motif
Consensus sequence: HHRCCBBWGGDCDB Consensus sequence: BDGHCCWBVGGKDH

Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0603516

Alignment:
ABBBBVVRGACCACCCACRDBBM
BBVGCCBVGGCCTV---------

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0604694

Alignment:
BDHHMCGCCCCCTHVBB
---VAGGCCBBGGCVBB

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0606067

Alignment:
HBDRCCMCGCCCHHHD
BBVGCCBVGGCCTV--

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 14
Similarity score: 0.0606878

Alignment:
HVGVSAGGAGGGTCYHHHHYVH
--------VAGGCCBBGGCVBB

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH

Motif ID: UP00087
Motif name: Tcfap2c_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0608063

Alignment:
HWGCCCTDGGGCDB
VAGGCCBBGGCVBB

Original motif Reverse complement motif
Consensus sequence: BHGCCCDAGGGCWD Consensus sequence: HWGCCCTDGGGCDB

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 14
Similarity score: 0.0615001

Alignment:
DVTTVVCVYGGHGGYCHHDMYB
----BBVGCCBVGGCCTV----

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH

Motif ID: UP00010
Motif name: Tcfap2b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0624288

Alignment:
HHKGCCYSRGGCWAD
-BBVGCCBVGGCCTV

Original motif Reverse complement motif
Consensus sequence: DTWGCCKSMGGCRHH Consensus sequence: HHKGCCYSRGGCWAD

Motif ID: UP00082
Motif name: Zfp187_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0627664

Alignment:
DDGMCCTBGTCCHYHV
VAGGCCBBGGCVBB--

Original motif Reverse complement motif
Consensus sequence: DDGMCCTBGTCCHYHV Consensus sequence: VHMDGGACVAGGRCDH

Motif ID: UP00009
Motif name: Nr2f2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0636529

Alignment:
HVBVTGACCCSGBVBV
--VAGGCCBBGGCVBB

Original motif Reverse complement motif
Consensus sequence: VBVBCSGGGTCAVBBH Consensus sequence: HVBVTGACCCSGBVBV

Dataset #: 5 Motif ID: 47 Motif name: Egr1

Original motif Reverse complement motif
Consensus sequence: HGCGTGGGCGK Consensus sequence: YCGCCCACGCH

Best Matches for Motif ID 47 (Highest to Lowest)

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 11
Similarity score: 0

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
------HGCGTGGGCGK------

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.00727533

Alignment:
HCCGCCCCCGCAHB
-YCGCCCACGCH--

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0262579

Alignment:
MHHHWHYTMCCHCCCACVAABVH
---------YCGCCCACGCH---

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY

Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 11
Similarity score: 0.0297053

Alignment:
YBVDMGTGGGTGGTCKVVBVBBT
--HGCGTGGGCGK----------

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0318144

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
----HGCGTGGGCGK--------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0345009

Alignment:
BVVHAGGGGGCGRDHHB
--HGCGTGGGCGK----

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0353502

Alignment:
BTBVTCVTGGGTGGTCMVVDVBB
---HGCGTGGGCGK---------

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0360229

Alignment:
BHHDTCCCACTCBDBV
--YCGCCCACGCH---

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 11
Similarity score: 0.0362743

Alignment:
VYWVVHCRCCACMCACGAHSBHH
--------YCGCCCACGCH----

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0386944

Alignment:
HDYTTGCACACGDHBH
---YCGCCCACGCH--

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH

Dataset #: 5 Motif ID: 48 Motif name: SP1

Original motif Reverse complement motif
Consensus sequence: CCCCKCCCCC Consensus sequence: GGGGGYGGGG

Best Matches for Motif ID 48 (Highest to Lowest)

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0231018

Alignment:
DBCCCCCCCCCCMYC
--CCCCKCCCCC---

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0303207

Alignment:
HBDRCCMCGCCCHHHD
----CCCCKCCCCC--

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0323007

Alignment:
HHHHDGGGGCGGDBHDV
----GGGGGYGGGG---

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0340973

Alignment:
HVDVGGGHGGGGDBHB
--GGGGGYGGGG----

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0351051

Alignment:
BHHHWGGGGCGGBBVH
----GGGGGYGGGG--

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 10
Similarity score: 0.0390437

Alignment:
HDBABCGBKRGYGGCGMSBHAK
------GGGGGYGGGG------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.0393358

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
-------GGGGGYGGGG------

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0413863

Alignment:
DHHBCCCCGCCAHHBHB
----CCCCKCCCCC---

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0418947

Alignment:
HVBCCCCCCCCMHHHB
---CCCCKCCCCC---

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.0420708

Alignment:
BDHHMCGCCCCCTHVBB
--CCCCKCCCCC-----

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Dataset #: 5 Motif ID: 49 Motif name: TFAP2A

Original motif Reverse complement motif
Consensus sequence: GCCBBVRGS Consensus sequence: SCMVBBGGC

Best Matches for Motif ID 49 (Highest to Lowest)

Motif ID: UP00010
Motif name: Tcfap2b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 9
Similarity score: 0.0115546

Alignment:
HHKGCCYSRGGCWAD
---GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: DTWGCCKSMGGCRHH Consensus sequence: HHKGCCYSRGGCWAD

Motif ID: UP00010
Motif name: Tcfap2b_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 9
Similarity score: 0.0150447

Alignment:
DYGCCYBARGGCAH
--GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: DYGCCYBARGGCAH Consensus sequence: HTGCCMTVKGGCMD

Motif ID: UP00005
Motif name: Tcfap2a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 9
Similarity score: 0.0151527

Alignment:
WDHSCCYSRGGSRAD
---GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: WDHSCCYSRGGSRAD Consensus sequence: DTMSCCKSMGGSHDW

Motif ID: UP00087
Motif name: Tcfap2c_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 9
Similarity score: 0.016909

Alignment:
WHHSCCYSRGGSDAD
---GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: WHHSCCYSRGGSDAD Consensus sequence: DTHSCCKSMGGSHHW

Motif ID: UP00087
Motif name: Tcfap2c_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 9
Similarity score: 0.0170259

Alignment:
BHGCCCDAGGGCWD
--GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: BHGCCCDAGGGCWD Consensus sequence: HWGCCCTDGGGCDB

Motif ID: UP00028
Motif name: Tcfap2e_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 9
Similarity score: 0.0198854

Alignment:
HHHGCCTSAGGCDAD
---GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: HHHGCCTSAGGCDAD Consensus sequence: DTHGCCTSAGGCHHH

Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 9
Similarity score: 0.0203681

Alignment:
BHBHDTGGCGGGGBDHD
SCMVBBGGC--------

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD

Motif ID: UP00003
Motif name: E2F3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 9
Similarity score: 0.0217064

Alignment:
BBBDYTGGCGCCKWDBD
SCMVBBGGC--------

Original motif Reverse complement motif
Consensus sequence: HBHWYGGCGCCAMDVBB Consensus sequence: BBBDYTGGCGCCKWDBD

Motif ID: UP00005
Motif name: Tcfap2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 9
Similarity score: 0.0234775

Alignment:
HHRCCBBWGGDCDB
--GCCBBVRGS---

Original motif Reverse complement motif
Consensus sequence: HHRCCBBWGGDCDB Consensus sequence: BDGHCCWBVGGKDH

Motif ID: UP00093
Motif name: Klf7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 9
Similarity score: 0.026642

Alignment:
VVDBATACGCCCHAHHD
--------GCCBBVRGS

Original motif Reverse complement motif
Consensus sequence: VVDBATACGCCCHAHHD Consensus sequence: DHDTHGGGCGTATBHBB

Dataset #: 5 Motif ID: 50 Motif name: MIZF

Original motif Reverse complement motif
Consensus sequence: BAACGTCCGC Consensus sequence: GCGGACGTTV

Best Matches for Motif ID 50 (Highest to Lowest)

Motif ID: UP00419
Motif name: Spic
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0

Alignment:
DWACTTCCRCTTTB
BAACGTCCGC----

Original motif Reverse complement motif
Consensus sequence: VAAAGMGGAAGTWD Consensus sequence: DWACTTCCRCTTTB

Motif ID: UP00409
Motif name: Elf5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.00379999

Alignment:
BWAHSMGGAAGTWD
BAACGTCCGC----

Original motif Reverse complement motif
Consensus sequence: BWAHSMGGAAGTWD Consensus sequence: DWACTTCCRSDTWV

Motif ID: UP00413
Motif name: Elf4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0124101

Alignment:
DBBHACTTCCGGKWTH
--BAACGTCCGC----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGKWTH Consensus sequence: HAWYCCGGAAGTHBBD

Motif ID: UP00404
Motif name: Elf2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0128348

Alignment:
DBBHACTTCCGGDWDB
--BAACGTCCGC----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGDWDB Consensus sequence: BDWDCCGGAAGTHBBD

Motif ID: UP00085
Motif name: Sfpi1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0141516

Alignment:
HDACTTCCBCWTDV
BAACGTCCGC----

Original motif Reverse complement motif
Consensus sequence: BDAWGVGGAAGTDH Consensus sequence: HDACTTCCBCWTDV

Motif ID: UP00423
Motif name: Gm5454
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0144665

Alignment:
DVHACCGGAAGTHDDV
----GCGGACGTTV--

Original motif Reverse complement motif
Consensus sequence: VDHHACTTCCGGTHVH Consensus sequence: DVHACCGGAAGTHDDV

Motif ID: UP00412
Motif name: Etv5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0155825

Alignment:
DHHACCGGAWGTTDDV
----GCGGACGTTV--

Original motif Reverse complement motif
Consensus sequence: VDHAACWTCCGGTHHH Consensus sequence: DHHACCGGAWGTTDDV

Motif ID: UP00015
Motif name: Ehf_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0162018

Alignment:
VBDABCCGGAAGTDD
-----GCGGACGTTV

Original motif Reverse complement motif
Consensus sequence: VBDABCCGGAAGTDD Consensus sequence: DDACTTCCGGBTHBB

Motif ID: UP00418
Motif name: Etv6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0171234

Alignment:
DVHBTACTTCCGGHTHB
---BAACGTCCGC----

Original motif Reverse complement motif
Consensus sequence: DVHBTACTTCCGGHTHB Consensus sequence: BHAHCCGGAAGTABDVD

Motif ID: UP00421
Motif name: Etv1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0184147

Alignment:
MVHBACCGGAAGTVDVH
-----GCGGACGTTV--

Original motif Reverse complement motif
Consensus sequence: MVHBACCGGAAGTVDVH Consensus sequence: HBDBACTTCCGGTBHVY

Dataset #: 5 Motif ID: 51 Motif name: Klf4

Original motif Reverse complement motif
Consensus sequence: DGGGYGKGGC Consensus sequence: GCCYCMCCCD

Best Matches for Motif ID 51 (Highest to Lowest)

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0

Alignment:
DHHDGGGCGRGGKHBH
---DGGGYGKGGC---

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0153308

Alignment:
DBCCCCCCCCCCMYC
---GCCYCMCCCD--

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00002
Motif name: Sp4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0186791

Alignment:
BDWAGGCGTGBCHHD
--DGGGYGKGGC---

Original motif Reverse complement motif
Consensus sequence: BDWAGGCGTGBCHHD Consensus sequence: HHDGBCACGCCTWDB

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0218399

Alignment:
HVBCCCCCCCCMHHHB
--GCCYCMCCCD----

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0249586

Alignment:
VHTGCGGGGGCGGH
GCCYCMCCCD----

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0299159

Alignment:
BVVHAGGGGGCGRDHHB
------DGGGYGKGGC-

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0308595

Alignment:
BHBHDTGGCGGGGBDHD
----DGGGYGKGGC---

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD

Motif ID: UP00047
Motif name: Zbtb7b_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 10
Similarity score: 0.0345891

Alignment:
VHWTTHGGGGGGVDD
GCCYCMCCCD-----

Original motif Reverse complement motif
Consensus sequence: DDVCCCCCCHAAWHB Consensus sequence: VHWTTHGGGGGGVDD

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0346735

Alignment:
HBBBCCGCCCCWHHHV
--GCCYCMCCCD----

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 10
Similarity score: 0.0351496

Alignment:
MHHHWHYTMCCHCCCACVAABVH
------GCCYCMCCCD-------

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY

Dataset #: 5 Motif ID: 52 Motif name: E2F1

Original motif Reverse complement motif
Consensus sequence: TTTSGCGC Consensus sequence: GCGCSAAA

Best Matches for Motif ID 52 (Highest to Lowest)

Motif ID: UP00001
Motif name: E2F2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0

Alignment:
HVBWYGGCGCCAADVBB
------GCGCSAAA---

Original motif Reverse complement motif
Consensus sequence: HVBWYGGCGCCAADVBB Consensus sequence: BBBDTTGGCGCCKWVVD

Motif ID: UP00003
Motif name: E2F3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00182028

Alignment:
HBHWYGGCGCCAMDVBB
------GCGCSAAA---

Original motif Reverse complement motif
Consensus sequence: HBHWYGGCGCCAMDVBB Consensus sequence: BBBDYTGGCGCCKWDBD

Motif ID: UP00072
Motif name: IRC900814_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0237639

Alignment:
BHDWTTTGTCGTAHDD
----TTTSGCGC----

Original motif Reverse complement motif
Consensus sequence: DDHTACGACAAAWDDB Consensus sequence: BHDWTTTGTCGTAHDD

Motif ID: UP00003
Motif name: E2F3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0275636

Alignment:
WHSGCGCGCCHTDHB
-----GCGCSAAA--

Original motif Reverse complement motif
Consensus sequence: VHDADGGCGCGCSHW Consensus sequence: WHSGCGCGCCHTDHB

Motif ID: UP00065
Motif name: Zfp161_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.028109

Alignment:
DMMDGMGCGCGCGCHD
--------GCGCSAAA

Original motif Reverse complement motif
Consensus sequence: DDGCGCGCGCRCHYRD Consensus sequence: DMMDGMGCGCGCGCHD

Motif ID: UP00001
Motif name: E2F2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0296302

Alignment:
HHVGCGCGCCKTDHB
-----GCGCSAAA--

Original motif Reverse complement motif
Consensus sequence: VHDARGGCGCGCVHH Consensus sequence: HHVGCGCGCCKTDHB

Motif ID: UP00068
Motif name: Eomes_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0348969

Alignment:
BVHDAGGTGTGAAAHHH
------GCGCSAAA---

Original motif Reverse complement motif
Consensus sequence: BVHDAGGTGTGAAAHHH Consensus sequence: HHHTTTCACACCTDHBV

Motif ID: UP00011
Motif name: Irf6_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0368278

Alignment:
DHDBTKGTTTCGHTHDD
-------TTTSGCGC--

Original motif Reverse complement motif
Consensus sequence: HDDAHCGAAACYAVDDD Consensus sequence: DHDBTKGTTTCGHTHDD

Motif ID: UP00049
Motif name: Sp100_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0383813

Alignment:
DWTTTCCGHHWAWD
-----GCGCSAAA-

Original motif Reverse complement motif
Consensus sequence: DWTWHHCGGAAAWD Consensus sequence: DWTTTCCGHHWAWD

Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.0406002

Alignment:
TCDAMVBGACGCMAKDDDVBBD
--------GCGCSAAA------

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD

Dataset #: 5 Motif ID: 53 Motif name: HIF1AARNT

Original motif Reverse complement motif
Consensus sequence: VBACGTGV Consensus sequence: VCACGTBV

Best Matches for Motif ID 53 (Highest to Lowest)

Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0

Alignment:
HDYTTGCACACGDHBH
-------VCACGTBV-

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH

Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.000574345

Alignment:
DDASCACGTGBTBVDD
---VBACGTGV-----

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 8
Similarity score: 0.00642455

Alignment:
YDYBDHTMCACGTGGADDBMDGT
-------VBACGTGV--------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM

Motif ID: UP00084
Motif name: Gmeb1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0131171

Alignment:
BVVDVRYACGTRYVBHB
-----VBACGTGV----

Original motif Reverse complement motif
Consensus sequence: BHBBKKACGTMMVDBVB Consensus sequence: BVVDVRYACGTRYVBHB

Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.014006

Alignment:
RDHDBVDTCACGTGASBHVHDH
-------VCACGTBV-------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM

Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0184296

Alignment:
VBHHVCAGGTGCDVDHD
----VBACGTGV-----

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB

Motif ID: UP00068
Motif name: Eomes_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0188154

Alignment:
VVBVCKACACCTHVBV
------VCACGTBV--

Original motif Reverse complement motif
Consensus sequence: VBVDAGGTGTYGVBBV Consensus sequence: VVBVCKACACCTHVBV

Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 8
Similarity score: 0.0189568

Alignment:
DHVDTGTGCACAYAHDH
-VBACGTGV--------

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD

Motif ID: UP00042
Motif name: Gm397_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.0198987

Alignment:
HHRTATGTGCACATHHD
--VBACGTGV-------

Original motif Reverse complement motif
Consensus sequence: HHDATGTGCACATAMDH Consensus sequence: HHRTATGTGCACATHHD

Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.021967

Alignment:
BBGHCACGCGACDD
---VCACGTBV---

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB

Dataset #: 5 Motif ID: 54 Motif name: PLAG1

Original motif Reverse complement motif
Consensus sequence: GGGGCCCAAGGGGG Consensus sequence: CCCCCTTGGGCCCC

Best Matches for Motif ID 54 (Highest to Lowest)

Motif ID: UP00102
Motif name: Zic1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0499525

Alignment:
CCCCCCCGGGGGHB
CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: BHCCCCCGGGGGGG Consensus sequence: CCCCCCCGGGGGHB

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0540613

Alignment:
BBBDVVRGACCACCCAVGABBAB
---------CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Motif ID: UP00057
Motif name: Zic2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0548411

Alignment:
BMCCCCCGGGGGGGB
-CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: BMCCCCCGGGGGGGB Consensus sequence: VCCCCCCCGGGGGRB

Motif ID: UP00005
Motif name: Tcfap2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0556785

Alignment:
HHRCCBBWGGDCDB
GGGGCCCAAGGGGG

Original motif Reverse complement motif
Consensus sequence: HHRCCBBWGGDCDB Consensus sequence: BDGHCCWBVGGKDH

Motif ID: UP00006
Motif name: Zic3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.056976

Alignment:
BMCCCCCGGGGGGGB
-CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: BMCCCCCGGGGGGGB Consensus sequence: VCCCCCCCGGGGGRB

Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 14
Similarity score: 0.0573495

Alignment:
HDGHHBHRGACCACCCGSVDVG
CCCCCTTGGGCCCC--------

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 14
Similarity score: 0.0579022

Alignment:
VMYDHDGMCCHCCKBGVVAAVH
--------CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH

Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 14
Similarity score: 0.0580662

Alignment:
DVMHHDHKGACCCTCCTSVCBH
CCCCCTTGGGCCCC--------

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0597453

Alignment:
HGDHVHKGACCACCCGGBGBGDB
---------CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0598088

Alignment:
GKRGGGGGGGGGGBD
-CCCCCTTGGGCCCC

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Dataset #: 5 Motif ID: 55 Motif name: Pax5

Original motif Reverse complement motif
Consensus sequence: DGVBCABTGDWGCGKRRCSR Consensus sequence: MSGKKRCGCWDCABTGBBCD

Best Matches for Motif ID 55 (Highest to Lowest)

Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 20
Similarity score: 0.0499537

Alignment:
DDRMHBACGCGYGCGTDGBBDB
-DGVBCABTGDWGCGKRRCSR-

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD

Motif ID: UP00526
Motif name: Foxn1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 20
Similarity score: 0.0520196

Alignment:
WHVBVVMACGCGCGTCDYHWDH
DGVBCABTGDWGCGKRRCSR--

Original motif Reverse complement motif
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Consensus sequence: HDWHMHGACGCGCGTRBVVBHW

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 20
Similarity score: 0.0542764

Alignment:
HDBABCGBKRGYGGCGMSBHAK
-DGVBCABTGDWGCGKRRCSR-

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 20
Similarity score: 0.0560636

Alignment:
DCATDBTGHGCATKMTTBRSWR
--MSGKKRCGCWDCABTGBBCD

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 20
Similarity score: 0.0595671

Alignment:
HHBSHTCGTGRGTGGKGDBVWMV
DGVBCABTGDWGCGKRRCSR---

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00528
Motif name: Foxm1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 20
Similarity score: 0.0602559

Alignment:
HADTBVADGATGCATCMTGMVHB
DGVBCABTGDWGCGKRRCSR---

Original motif Reverse complement motif
Consensus sequence: HADTBVADGATGCATCMTGMVHB Consensus sequence: VHVRCAYGATGCATCDTVVADTH

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 20
Similarity score: 0.0607506

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
DGVBCABTGDWGCGKRRCSR---

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 20
Similarity score: 0.0611227

Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
MSGKKRCGCWDCABTGBBCD---

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 20
Similarity score: 0.0611361

Alignment:
RDHDBVDTCACGTGASBHVHDH
--MSGKKRCGCWDCABTGBBCD

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM

Motif ID: UP00034
Motif name: Sox7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 20
Similarity score: 0.061403

Alignment:
GTVBDAATTGTVTGHGDDHKVB
DGVBCABTGDWGCGKRRCSR--

Original motif Reverse complement motif
Consensus sequence: GTVBDAATTGTVTGHGDDHKVB Consensus sequence: VVYDDDCHCAVACAATTDBVAC

Dataset #: 5 Motif ID: 56 Motif name: ArntAhr

Original motif Reverse complement motif
Consensus sequence: YGCGTG Consensus sequence: CACGCM

Best Matches for Motif ID 56 (Highest to Lowest)

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
------YGCGTG-----------

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00002
Motif name: Sp4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.00183587

Alignment:
HHDGBCACGCCTWDB
-----CACGCM----

Original motif Reverse complement motif
Consensus sequence: BDWAGGCGTGBCHHD Consensus sequence: HHDGBCACGCCTWDB

Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.00348048

Alignment:
HDGTCGCGTGDCVB
----YGCGTG----

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB

Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 6
Similarity score: 0.00526158

Alignment:
TCDAMVBGACGCMAKDDDVBBD
-------CACGCM---------

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.00558171

Alignment:
HBGYGTGTGTGCVRVD
---YGCGTG-------

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD

Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0.00702416

Alignment:
HDYTTGCACACGDHBH
--------CACGCM--

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH

Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 6
Similarity score: 0.0123233

Alignment:
DDRMHBACGCGYGCGTDGBBDB
-------YGCGTG---------

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD

Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 6
Similarity score: 0.0141579

Alignment:
HCCGCCCCCGCAHB
------CACGCM--

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 6
Similarity score: 0.0144485

Alignment:
BHCBCBCCGGGTGGTCYHVHDCH
-------YGCGTG----------

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 6
Similarity score: 0.0172109

Alignment:
VHYTCCDWCCGCGTCMMTHWHV
---------YGCGTG-------

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Dataset #: 5 Motif ID: 57 Motif name: Mycn

Original motif Reverse complement motif
Consensus sequence: HSCACGTGGC Consensus sequence: GCCACGTGSD

Best Matches for Motif ID 57 (Highest to Lowest)

Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0

Alignment:
DDASCACGTGBTBVDD
--HSCACGTGGC----

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.00783793

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
-------GCCACGTGSD------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM

Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.0132858

Alignment:
DDHBHBSTCACGTGAHBBDHHM
------GCCACGTGSD------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM

Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0227933

Alignment:
VBHHVCAGGTGCDVDHD
---GCCACGTGSD----

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB

Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0257011

Alignment:
BBGHCACGCGACDD
--HSCACGTGGC--

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB

Motif ID: UP00165
Motif name: Titf1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0344833

Alignment:
BVABCCACTTGAMHTT
---GCCACGTGSD---

Original motif Reverse complement motif
Consensus sequence: BVABCCACTTGAMHTT Consensus sequence: AAHYTCAAGTGGBTBV

Motif ID: UP00231
Motif name: Nkx2-2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.035228

Alignment:
HDVRCCACTTGARADBD
---GCCACGTGSD----

Original motif Reverse complement motif
Consensus sequence: HDVRCCACTTGARADBD Consensus sequence: DVDTKTCAAGTGGKBDH

Motif ID: UP00084
Motif name: Gmeb1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0358581

Alignment:
BVVDVRYACGTRYVBHB
----GCCACGTGSD---

Original motif Reverse complement motif
Consensus sequence: BHBBKKACGTMMVDBVB Consensus sequence: BVVDVRYACGTRYVBHB

Motif ID: UP00084
Motif name: Gmeb1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.03725

Alignment:
HHMACKACGTMGBVCD
---HSCACGTGGC---

Original motif Reverse complement motif
Consensus sequence: DGVBCRACGTYGTYHH Consensus sequence: HHMACKACGTMGBVCD

Motif ID: UP00526
Motif name: Foxn1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 10
Similarity score: 0.0383187

Alignment:
WHVBVVMACGCGCGTCDYHWDH
------HSCACGTGGC------

Original motif Reverse complement motif
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Consensus sequence: HDWHMHGACGCGCGTRBVVBHW

Dataset #: 5 Motif ID: 58 Motif name: Myc

Original motif Reverse complement motif
Consensus sequence: VGCACGTGGH Consensus sequence: DCCACGTGCV

Best Matches for Motif ID 58 (Highest to Lowest)

Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0

Alignment:
DDASCACGTGBTBVDD
--VGCACGTGGH----

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 10
Similarity score: 0.00631885

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
-------DCCACGTGCV------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM

Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0.00821668

Alignment:
DDHBHBSTCACGTGAHBBDHHM
------DCCACGTGCV------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM

Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0140005

Alignment:
DHDBHGCACCTGBDDVB
----VGCACGTGGH---

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB

Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0308912

Alignment:
BBGHCACGCGACDD
--VGCACGTGGH--

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB

Motif ID: UP00165
Motif name: Titf1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0311723

Alignment:
BVABCCACTTGAMHTT
---DCCACGTGCV---

Original motif Reverse complement motif
Consensus sequence: BVABCCACTTGAMHTT Consensus sequence: AAHYTCAAGTGGBTBV

Motif ID: UP00249
Motif name: Nkx2-5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.031308

Alignment:
HDADCCACTTRAAWTT
---DCCACGTGCV---

Original motif Reverse complement motif
Consensus sequence: HDADCCACTTRAAWTT Consensus sequence: AAWTTMAAGTGGHTDH

Motif ID: UP00231
Motif name: Nkx2-2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0334845

Alignment:
HDVRCCACTTGARADBD
---DCCACGTGCV----

Original motif Reverse complement motif
Consensus sequence: HDVRCCACTTGARADBD Consensus sequence: DVDTKTCAAGTGGKBDH

Motif ID: UP00147
Motif name: Nkx2-6
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.0345548

Alignment:
DDADCCACTTAAVHTT
---DCCACGTGCV---

Original motif Reverse complement motif
Consensus sequence: DDADCCACTTAAVHTT Consensus sequence: AAHVTTAAGTGGHTDD

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 10
Similarity score: 0.0363818

Alignment:
VDWDARRGACGCGGWHGGAKHV
-----VGCACGTGGH-------

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Dataset #: 5 Motif ID: 59 Motif name: GABPA

Original motif Reverse complement motif
Consensus sequence: CCGGAAGTGVV Consensus sequence: VVCACTTCCGG

Best Matches for Motif ID 59 (Highest to Lowest)

Motif ID: UP00013
Motif name: Gabpa_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0

Alignment:
BHHHACTTCCGGTHHBD
-VVCACTTCCGG-----

Original motif Reverse complement motif
Consensus sequence: HVHHACCGGAAGTDHHV Consensus sequence: BHHHACTTCCGGTHHBD

Motif ID: UP00410
Motif name: Elk1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.000136484

Alignment:
VVHBACCGGAAGTDBHD
-----CCGGAAGTGVV-

Original motif Reverse complement motif
Consensus sequence: VVHBACCGGAAGTDBHD Consensus sequence: DHBDACTTCCGGTVHVB

Motif ID: UP00420
Motif name: Elk3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.000219706

Alignment:
DVBBACCGGAAGYDVVV
-----CCGGAAGTGVV-

Original motif Reverse complement motif
Consensus sequence: DVBBACCGGAAGYDVVV Consensus sequence: VBVDMCTTCCGGTVBVD

Motif ID: UP00421
Motif name: Etv1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.000932023

Alignment:
MVHBACCGGAAGTVDVH
-----CCGGAAGTGVV-

Original motif Reverse complement motif
Consensus sequence: MVHBACCGGAAGTVDVH Consensus sequence: HBDBACTTCCGGTBHVY

Motif ID: UP00404
Motif name: Elf2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.00527483

Alignment:
DBBHACTTCCGGDWDB
-VVCACTTCCGG----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGDWDB Consensus sequence: BDWDCCGGAAGTHBBD

Motif ID: UP00414
Motif name: Ets1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.00805613

Alignment:
BDDDHACCGGAARTVDD
------CCGGAAGTGVV

Original motif Reverse complement motif
Consensus sequence: BDDDHACCGGAARTVDD Consensus sequence: DDBAMTTCCGGTDHDHB

Motif ID: UP00423
Motif name: Gm5454
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.00933976

Alignment:
VDHHACTTCCGGTHVH
-VVCACTTCCGG----

Original motif Reverse complement motif
Consensus sequence: VDHHACTTCCGGTHVH Consensus sequence: DVHACCGGAAGTHDDV

Motif ID: UP00413
Motif name: Elf4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.00992792

Alignment:
DBBHACTTCCGGKWTH
-VVCACTTCCGG----

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGKWTH Consensus sequence: HAWYCCGGAAGTHBBD

Motif ID: UP00418
Motif name: Etv6
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0114183

Alignment:
DVHBTACTTCCGGHTHB
--VVCACTTCCGG----

Original motif Reverse complement motif
Consensus sequence: DVHBTACTTCCGGHTHB Consensus sequence: BHAHCCGGAAGTABDVD

Motif ID: UP00411
Motif name: Erg
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0122484

Alignment:
BDDACCGGAAKTVBVB
----CCGGAAGTGVV-

Original motif Reverse complement motif
Consensus sequence: VBBVAYTTCCGGTDDB Consensus sequence: BDDACCGGAAKTVBVB

Results created by MOTIFSIM on 06-18-2018 14:32:36
Runtime: 695.758 seconds

MOTIFSIM is written by Ngoc Tam L. Tran
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