**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 5 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # DREME_DM230.txt 1 1 MEME_DM230.txt 20 2 PScanChIP_DM230.txt 14 3 RSAT_peak-motifs_DM230.txt 10 4 PScanChIP_DM230.txt 14 5 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** *************************************************************** Combined Motifs for Top Best Match Motif ID 1 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 1 csGCCCCGCCCCsc Reverse Complement Original Motif GCCCCGCC HVGCCCCGCCCCBB CCBBGCCCCGCCHV Direction: Backward Position #: 5 Overlap #: 8 Alignment: --GCCCCGCC---- HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif CCBBGCCCCGCCHV BCCGCCCCGCCCCBB CCBBSSCCCSSCCCCBB Direction: Forward Position #: 3 Overlap #: 12 Alignment: CCBBGCCCCGCCHV--- --BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif CCBBSSCCCSSCCCCBB CSKCCCCGCCCCSY CCBCSGCCCCGCCCCSB Direction: Forward Position #: 4 Overlap #: 14 Alignment: CCBBSSCCCSSCCCCBB ---CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Reverse Complement CCBCSGCCCCGCCCCSB GCCYCMCCCD SCCYCVCCCVGCCCCSB Direction: Forward Position #: 1 Overlap #: 10 Alignment: CCBCSGCCCCGCCCCSB GCCYCMCCCD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Reverse Complement SCCYCVCCCVGCCCCSB GCCYCMCCCD SCCYCMCCCDGCCCCSB Direction: Forward Position #: 1 Overlap #: 10 Alignment: SCCYCVCCCVGCCCCSB GCCYCMCCCD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement SCCYCMCCCDGCCCCSB VAGGCCBBGGCVBB SCCBMGSCCBSSSCCBB Direction: Forward Position #: 4 Overlap #: 14 Alignment: SCCYCMCCCDGCCCCSB ---VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement SCCBMGSCCBSSSCCBB VAGGCCBBGGCVBB SCCAGGCCCBGSCCSBB Direction: Forward Position #: 3 Overlap #: 14 Alignment: SCCBMGSCCBSSSCCBB --VAGGCCBBGGCVBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement SCCAGGCCCBGSCCSBB MSGKKRCGCWDCABTGBBCD SCCMSGBCVCGCHBCVBTGBBCD Direction: Forward Position #: 4 Overlap #: 14 Alignment: SCCAGGCCCBGSCCSBB------ ---MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif SCCMSGBCVCGCHBCVBTGBBCD DGVBCABTGDWGCGKRRCSR SCCMVGBBVHBYBDHGVDKVDCVR Direction: Forward Position #: 5 Overlap #: 19 Alignment: SCCMSGBCVCGCHBCVBTGBBCD- ----DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 Combined Motif Reverse Complement Reverse Complement MVGHBYHVCHDBKBHVBBCVYGGS YCGCCCACGCH MVGHBCBCCCACGCHVBBCVYGGS Direction: Forward Position #: 5 Overlap #: 11 Alignment: MVGHBYHVCHDBKBHVBBCVYGGS ----YCGCCCACGCH--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Reverse Complement MVGHBCBCCCACGCHVBBCVYGGS YCGCCCACGCH YCGCCCRCSCHCGCHVBBCVYGGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: MVGHBCBCCCACGCHVBBCVYGGS YCGCCCACGCH------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 2 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 2 Pax5 Reverse Complement Reverse Complement MTMMTCMMTCTKCK MSGKKRCGCWDCABTGBBCD MSGKKRMKCHTCMVTVTBCK Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------MTMMTCMMTCTKCK MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif RGVAVAVYGAHGYRKRYCSR DGVBCABTGDWGCGKRRCSR RGVAVRVBVAHKBRDGCSBRRCSR Direction: Forward Position #: 5 Overlap #: 16 Alignment: RGVAVAVYGAHGYRKRYCSR---- ----DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Original Motif Original Motif RGVAVRVBVAHKBRDGCSBRRCSR AWAAAWTWAAASWA ADAAADHHAAAVDADGCSBRRCSR Direction: Forward Position #: 1 Overlap #: 14 Alignment: RGVAVRVBVAHKBRDGCSBRRCSR AWAAAWTWAAASWA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Reverse Complement Reverse Complement MSGKKBSGCDTDVTTTHHDTTTHT MSGGGGCGGGGYSG MSGGGGCGSGGHSBTTHHDTTTHT Direction: Forward Position #: 1 Overlap #: 14 Alignment: MSGKKBSGCDTDVTTTHHDTTTHT MSGGGGCGGGGYSG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Reverse Complement MSGGGGCGSGGHSBTTHHDTTTHT BBGGGGCGGGGCVD VSGGGGCGGGGCVBTTHHDTTTHT Direction: Forward Position #: 1 Overlap #: 14 Alignment: MSGGGGCGSGGHSBTTHHDTTTHT BBGGGGCGGGGCVD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Original Motif Reverse Complement VSGGGGCGGGGCVBTTHHDTTTHT GGGGGYGGGG VSGGGGSGGGBBGGKTHHDTTTHT Direction: Forward Position #: 6 Overlap #: 10 Alignment: VSGGGGCGGGGCVBTTHHDTTTHT -----GGGGGYGGGG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Original Motif Reverse Complement VSGGGGSGGGBBGGKTHHDTTTHT GGGGGYGGGG VSGGGGGGGGBGGGGTHHDTTTHT Direction: Forward Position #: 6 Overlap #: 10 Alignment: VSGGGGSGGGBBGGKTHHDTTTHT -----GGGGGYGGGG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Reverse Complement Original Motif ADAAADHHACCCCBCCCCCCCCSV DBGTAAATAHD DDRWAAATAHHCCBCCCCCCCCSV Direction: Forward Position #: 1 Overlap #: 11 Alignment: ADAAADHHACCCCBCCCCCCCCSV DBGTAAATAHD------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Original Motif VSGGGGGGGGBGGDDTATTTWMHD GGGGCCCAAGGGGG VGGGGSSBRRGGGGGTATTTWMHD Direction: Forward Position #: 2 Overlap #: 14 Alignment: VSGGGGGGGGBGGDDTATTTWMHD -GGGGCCCAAGGGGG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Original Motif VGGGGSSBRRGGGGGTATTTWMHD GGGGCCCAAGGGGG GGGGSCCDRGGGGGGTATTTWMHD Direction: Forward Position #: 1 Overlap #: 14 Alignment: VGGGGSSBRRGGGGGTATTTWMHD GGGGCCCAAGGGGG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 3 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Motif 8 Reverse Complement Reverse Complement TWSTTTWAWTTTWT TGATTTTAWKATTT TGATTTTAWTWTTT Direction: Backward Position #: 1 Overlap #: 14 Alignment: TWSTTTWAWTTTWT TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement TGATTTTAWTWTTT AAATTKTATTTAWT TAAWTTTWATTTWTT Direction: Forward Position #: 2 Overlap #: 13 Alignment: TGATTTTAWTWTTT- -AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Reverse Complement Reverse Complement AAWAAATWAAAWTTA TTTDAWATATHATT TWWDAWATWWAAWTTA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -AAWAAATWAAAWTTA TTTDAWATATHATT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Original Motif TWWDAWATWWAAWTTA AATTYDGAARTAWW TWWWATWTWGAADTWAW Direction: Forward Position #: 4 Overlap #: 13 Alignment: TWWDAWATWWAAWTTA- ---AATTYDGAARTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 2 Original Motif Original Motif TWWWATWTWGAADTWAW RGRAGARRGARRAR RKDWDADDBAGAARTWAW Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TWWWATWTWGAADTWAW RGRAGARRGARRAR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Original Motif RKDWDADDBAGAARTWAW HDAAATAATADD RKDWDAAATARWADTWAW Direction: Forward Position #: 4 Overlap #: 12 Alignment: RKDWDADDBAGAARTWAW ---HDAAATAATADD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Reverse Complement Reverse Complement WTWADTWKTATTTDWDRK WHTATTATTTDH WTWWDTATTATTTDHDRK Direction: Forward Position #: 4 Overlap #: 12 Alignment: WTWADTWKTATTTDWDRK ---WHTATTATTTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Reverse Complement WTWWDTATTATTTDHDRK TTTTATTGTYAT TTTTATTRTTATTTDHDRK Direction: Forward Position #: 2 Overlap #: 11 Alignment: -WTWWDTATTATTTDHDRK TTTTATTGTYAT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Original Motif Reverse Complement TTTTATTRTTATTTDHDRK DHTATTTACBD TWTWWTTAYBATTTDHDRK Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTTTATTRTTATTTDHDRK DHTATTTACBD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Reverse Complement TWTWWTTAYBATTTDHDRK AWGKAAWTTTT TWTWWKTAWWWTTTDHDRK Direction: Forward Position #: 4 Overlap #: 11 Alignment: TWTWWTTAYBATTTDHDRK ---AWGKAAWTTTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 4 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Motif 5 Original Motif Reverse Complement AAAAWTTRCWT AAATTKTATTTAWT AAAWTTTAYTTAWT Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAAWTTRCWT--- AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif AAAWTTTAYTTAWT AATHATATWTHAAA AAATTWTATTTAAWA Direction: Forward Position #: 2 Overlap #: 13 Alignment: AAAWTTTAYTTAWT- -AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif AAATTWTATTTAAWA AAATRWTAAAATCA AAATDWTAWAWWMAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAATTWTATTTAAWA AAATRWTAAAATCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Reverse Complement Reverse Complement TTRWWTWTAWDATTT TCAAAATKAWTTGT TYAAAATTAWTWKTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTRWWTWTAWDATTT TCAAAATKAWTTGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Original Motif Original Motif TYAAAATTAWTWKTT DBGTAAATAHD THRWAAWTAWDWKTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TYAAAATTAWTWKTT DBGTAAATAHD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Reverse Complement THRWAAWTAWDWKTT TWSTTTWAWTTTWT THDWAWWTWWWTKTTT Direction: Forward Position #: 3 Overlap #: 13 Alignment: THRWAAWTAWDWKTT- --TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 20 Combined Motif Original Motif Reverse Complement THDWAWWTWWWTKTTT AAATCTTTYAA THDWAWWTAAATYTTTYAA Direction: Forward Position #: 9 Overlap #: 8 Alignment: THDWAWWTWWWTKTTT--- --------AAATCTTTYAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Original Motif THDWAWWTAAATYTTTYAA HDAAATAATADD THWWATWWWAWTYTTTYAA Direction: Forward Position #: 1 Overlap #: 12 Alignment: THDWAWWTAAATYTTTYAA HDAAATAATADD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Reverse Complement THWWATWWWAWTYTTTYAA WHTATTATTTDH THWWATATTAWTYTWTYAA Direction: Forward Position #: 4 Overlap #: 12 Alignment: THWWATWWWAWTYTTTYAA ---WHTATTATTTDH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Reverse Complement THWWATATTAWTYTWTYAA WWTAKTTCDKAATT THWWWTATTWYTKAATTAA Direction: Forward Position #: 4 Overlap #: 14 Alignment: THWWATATTAWTYTWTYAA ---WWTAKTTCDKAATT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 5 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Motif 3 Reverse Complement Reverse Complement AAATTKTATTTAWT TWSTTTWAWTTTWT WAATTTTATTTWWT Direction: Backward Position #: 1 Overlap #: 14 Alignment: AAATTKTATTTAWT TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Reverse Complement WAATTTTATTTWWT TGATTTTAWKATTT TRATTTTAWTWTTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: WAATTTTATTTWWT TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Reverse Complement TRATTTTAWTWTTT WWTAKTTCDKAATT WDWWTTTMWKAWTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TRATTTTAWTWTTT WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Reverse Complement WDWWTTTMWKAWTT TCAAAATKAWTTGT TCAAAATKAWTTKTTTMWKAWTT Direction: Forward Position #: 10 Overlap #: 5 Alignment: ---------WDWWTTTMWKAWTT TCAAAATKAWTTGT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif TCAAAATKAWTTKTTTMWKAWTT AATHATATWTHAAA TCAAAATDAWWTDTTWMAKAWTT Direction: Forward Position #: 5 Overlap #: 14 Alignment: TCAAAATKAWTTKTTTMWKAWTT ----AATHATATWTHAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Original Motif Original Motif TCAAAATDAWWTDTTWMAKAWTT TTCWTAGATTAWA WATTCTTARATWATCAAAATDAWWT Direction: Backward Position #: 3 Overlap #: 11 Alignment: TCAAAATDAWWTDTTWMAKAWTT-- ------------TTCWTAGATTAWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Reverse Complement Reverse Complement AWWTDATTTTGATWATMTAAGAATW TTTTATTGTYAT ATTTTATTKTBATWATMTAAGAATW Direction: Forward Position #: 2 Overlap #: 12 Alignment: AWWTDATTTTGATWATMTAAGAATW -TTTTATTGTYAT------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Original Motif ATTTTATTKTBATWATMTAAGAATW ATTTWATGAAA ATTTWATKDWDATWATMTAAGAATW Direction: Forward Position #: 1 Overlap #: 11 Alignment: ATTTTATTKTBATWATMTAAGAATW ATTTWATGAAA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Reverse Complement Original Motif WATTCTTARATWATBWDYATWAAAT AAAAWTTRCWT AAWWHTTAVATWATBWDYATWAAAT Direction: Forward Position #: 1 Overlap #: 11 Alignment: WATTCTTARATWATBWDYATWAAAT AAAAWTTRCWT-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 20 Original Motif Reverse Complement AAWWHTTAVATWATBWDYATWAAAT AAATCTTTYAA AAATCTTWYAWWATBWDYATWAAAT Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAWWHTTAVATWATBWDYATWAAAT AAATCTTTYAA-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 6 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Motif 5 Reverse Complement Original Motif WWTAKTTCDKAATT AWTAAATAYAATTT AWTADWTMBDAWTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: WWTAKTTCDKAATT AWTAAATAYAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Reverse Complement AWTADWTMBDAWTT TGATTTTAWKATTT WKWWTTTAWDATTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: AWTADWTMBDAWTT TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif AAATHWTAAAWWYW AATHATATWTHAAA AAAWTWWWAWWTHAAA Direction: Forward Position #: 3 Overlap #: 12 Alignment: AAATHWTAAAWWYW-- --AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Original Motif Original Motif AAAWTWWWAWWTHAAA AWAAAWTWAAASWA AAAWAWWWAWADHAAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAAWTWWWAWWTHAAA AWAAAWTWAAASWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Original Motif TTTHDTWTWWWTWTTT TTCWTAGATTAWA TTYWTAKATTAWAWTTT Direction: Forward Position #: 2 Overlap #: 12 Alignment: -TTTHDTWTWWWTWTTT TTCWTAGATTAWA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tkAAATAATAtw Reverse Complement Original Motif AAAWTWTAATYTAWKAA HDAAATAATAHW AWAAWWWAWWYTAWKAA Direction: Forward Position #: 1 Overlap #: 12 Alignment: AAAWTWTAATYTAWKAA HDAAATAATAHW----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Original Motif AWAAWWWAWWYTAWKAA HDAAATAATADD WDAAATAATAHWAWKAA Direction: Forward Position #: 1 Overlap #: 12 Alignment: AWAAWWWAWWYTAWKAA HDAAATAATADD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Reverse Complement TTYWTWHTATTATTTDW TTTTATTGTYAT TTTTATTGTHWTATTTDW Direction: Forward Position #: 2 Overlap #: 11 Alignment: -TTYWTWHTATTATTTDW TTTTATTGTYAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Reverse Complement TTTTATTGTHWTATTTDW TCAAAATKAWTTGT TTTTATTGTCAWAWTTAWTTGT Direction: Forward Position #: 9 Overlap #: 10 Alignment: TTTTATTGTHWTATTTDW---- --------TCAAAATKAWTTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Reverse Complement Reverse Complement ACAAWTAAWTWTGACAATAAAA DHTATTTACBD ACAAWHWATTTWVAHAATAAAA Direction: Forward Position #: 5 Overlap #: 11 Alignment: ACAAWTAAWTWTGACAATAAAA ----DHTATTTACBD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 7 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 csGCCCCGCCCCsc Original Motif Original Motif CSKCCCCGCCCCSY HVGCCCCGCCCCBB CSGCCCCGCCCCSB Direction: Forward Position #: 1 Overlap #: 14 Alignment: CSKCCCCGCCCCSY HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Reverse Complement VSGGGGCGGGGCSG BBGGGGCGGGGCGGB VBGGGGCGGGGCGGB Direction: Forward Position #: 1 Overlap #: 14 Alignment: VSGGGGCGGGGCSG- BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement VBGGGGCGGGGCGGB MSGKKRCGCWDCABTGBBCD HSGGGGCGSKGCVBBGBBCD Direction: Forward Position #: 1 Overlap #: 15 Alignment: VBGGGGCGGGGCGGB----- MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif HSGGGGCGSKGCVBBGBBCD DGVBCABTGDWGCGKRRCSR HSGGGGCGSDBYGDDGCDHDRCSR Direction: Forward Position #: 5 Overlap #: 16 Alignment: HSGGGGCGSKGCVBBGBBCD---- ----DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement MSGKDDHGCDHCKBDSCGCCCCSD VAGGCCBBGGCVBB MAGGCCBBSBHVBBDSCGCCCCSD Direction: Forward Position #: 1 Overlap #: 14 Alignment: MSGKDDHGCDHCKBDSCGCCCCSD VAGGCCBBGGCVBB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Reverse Complement MAGGCCBBSBHVBBDSCGCCCCSD VAGGCCBBGGCVBB VAGGCCBBGGCVBBDSCGCCCCSD Direction: Forward Position #: 1 Overlap #: 14 Alignment: MAGGCCBBSBHVBBDSCGCCCCSD VAGGCCBBGGCVBB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Reverse Complement VAGGCCBBGGCVBBDSCGCCCCSD SGGTCACGTGACCS VRGKCMCGTGMCSSDSCGCCCCSD Direction: Forward Position #: 1 Overlap #: 14 Alignment: VAGGCCBBGGCVBBDSCGCCCCSD SGGTCACGTGACCS---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Original Motif HSGGGGCGSDSSGYCACGYGRCMV GGGGCCCAAGGGGG HSGGGGCSCWVGGGSRCGYGRCMV Direction: Forward Position #: 3 Overlap #: 14 Alignment: HSGGGGCGSDSSGYCACGYGRCMV --GGGGCCCAAGGGGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Original Motif HSGGGGCSCWVGGGSRCGYGRCMV GGGGCCCAAGGGGG HSGGGGSGCHVDRGGGSGYGRCMV Direction: Forward Position #: 5 Overlap #: 14 Alignment: HSGGGGCSCWVGGGSRCGYGRCMV ----GGGGCCCAAGGGGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Original Motif HSGGGGSGCHVDRGGGSGYGRCMV HGCGTGGGCGK HGSGKGGGCGBDRGGGSGYGRCMV Direction: Forward Position #: 1 Overlap #: 11 Alignment: HSGGGGSGCHVDRGGGSGYGRCMV HGCGTGGGCGK------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 8 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 8 Motif 3 Reverse Complement Reverse Complement TGATTTTAWKATTT TWSTTTWAWTTTWT TGATTTTAWTWTTT Direction: Backward Position #: 1 Overlap #: 14 Alignment: TGATTTTAWKATTT TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement TGATTTTAWTWTTT AAATTKTATTTAWT TAAWTTTWATTTWTT Direction: Forward Position #: 2 Overlap #: 13 Alignment: TGATTTTAWTWTTT- -AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Reverse Complement Reverse Complement AAWAAATWAAAWTTA WWTAKTTCDKAATT AWTADWTHDDAATTA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAWAAATWAAAWTTA WWTAKTTCDKAATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement TAATTDDDAWDTAWT TTTDAWATATHATT TAWTTDADATWTAATT Direction: Forward Position #: 3 Overlap #: 13 Alignment: TAATTDDDAWDTAWT- --TTTDAWATATHATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Reverse Complement TAWTTDADATWTAATT TTTTATTGTYAT TTTWATTGWHATWTAATT Direction: Forward Position #: 3 Overlap #: 10 Alignment: --TAWTTDADATWTAATT TTTTATTGTYAT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Reverse Complement AATTAWATHWCAATWAAA TWTAATCTAWGAA WWTAATMTAWSAATWAAA Direction: Forward Position #: 1 Overlap #: 13 Alignment: AATTAWATHWCAATWAAA TWTAATCTAWGAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Reverse Complement TTTWATTSWTARATTAWW TCAAAATKAWTTGT GTWYWAAWWKATTWTTTWAT Direction: Backward Position #: 3 Overlap #: 12 Alignment: TTTWATTSWTARATTAWW-- ------TCAAAATKAWTTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 9 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Motif 3 Original Motif Reverse Complement AATHATATWTHAAA TWSTTTWAWTTTWT WWBTWTWWWTHWAW Direction: Backward Position #: 1 Overlap #: 14 Alignment: AATHATATWTHAAA TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Reverse Complement WWBTWTWWWTHWAW WWTAKTTCDKAATT WWDTTWDTTYDDAATT Direction: Forward Position #: 3 Overlap #: 12 Alignment: WWBTWTWWWTHWAW-- --WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Original Motif WWDTTWDTTYDDAATT AWTAAATAYAATTT WWDAWTAWWTAHAATTT Direction: Forward Position #: 4 Overlap #: 13 Alignment: WWDTTWDTTYDDAATT- ---AWTAAATAYAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Reverse Complement AAATTHTAWWTAWTDWW TWTAATCTAWGAA TAWAWTCTAWKWAWTDWW Direction: Forward Position #: 2 Overlap #: 12 Alignment: -AAATTHTAWWTAWTDWW TWTAATCTAWGAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif TAWAWTCTAWKWAWTDWW AAATRWTAAAATCA AWATAWTMWAATMAWTDWW Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TAWAWTCTAWKWAWTDWW AAATRWTAAAATCA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Reverse Complement Reverse Complement WWDAWTRATTWYAWTATWT DDTATTATTTDH WWTATTAWTTWHAWTATWT Direction: Forward Position #: 1 Overlap #: 12 Alignment: WWDAWTRATTWYAWTATWT DDTATTATTTDH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tkAAATAATAtw Original Motif Reverse Complement WWTATTAWTTWHAWTATWT WHTATTATTTDH WHTATTATTTDHAWTATWT Direction: Forward Position #: 1 Overlap #: 12 Alignment: WWTATTAWTTWHAWTATWT WHTATTATTTDH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Original Motif WHTATTATTTDHAWTATWT ACAAWTRATTTTGA ACAWATDATTTTGAWTATWT Direction: Forward Position #: 2 Overlap #: 13 Alignment: -WHTATTATTTDHAWTATWT ACAAWTRATTTTGA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Reverse Complement Reverse Complement AWATAWTCAAAATDATWTGT DHTATTTACBD DATATWTWCDAAATDATWTGT Direction: Forward Position #: 2 Overlap #: 10 Alignment: -AWATAWTCAAAATDATWTGT DHTATTTACBD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Reverse Complement Original Motif ACAWATDATTTDGWAWATATD AAAAWTTRCWT AAAAWTTAYTTDGWAWATATD Direction: Forward Position #: 1 Overlap #: 11 Alignment: ACAWATDATTTDGWAWATATD AAAAWTTRCWT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 10 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Motif 11 Reverse Complement Original Motif AWTTATGAAA ATTTWATGAAA AWTTTATGAAA Direction: Forward Position #: 2 Overlap #: 10 Alignment: -AWTTATGAAA ATTTWATGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Original Motif AWTTTATGAAA AATTYDGAARTAWW AATTTAKRAAAAWW Direction: Forward Position #: 1 Overlap #: 11 Alignment: AWTTTATGAAA--- AATTYDGAARTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif AATTTAKRAAAAWW AAATRWTAAAATCA AAWTDATAAAAWMA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AATTTAKRAAAAWW AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Reverse Complement TRWTTTTATDAWTT AAATTKTATTTAWT WAATTTTATTWATT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TRWTTTTATDAWTT AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 17 Original Motif Original Motif WAATTTTATTWATT AAAAATGAAT AAAAWTKWATTWATT Direction: Forward Position #: 2 Overlap #: 9 Alignment: -WAATTTTATTWATT AAAAATGAAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Original Motif AAAAWTKWATTWATT AATHATATWTHAAA AAWAWTRWATHAAWT Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAAAWTKWATTWATT AATHATATWTHAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Reverse Complement AWTTHATWKAWTWTT TTTTATTGTYAT ATTTWTATWKTHAWTTH Direction: Backward Position #: 3 Overlap #: 10 Alignment: AWTTHATWKAWTWTT-- -----TTTTATTGTYAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 11 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Motif 5 Reverse Complement Original Motif TTTCATWAAAT AWTAAATAYAATTT AWTWWMWWHAAWTT Direction: Forward Position #: 3 Overlap #: 11 Alignment: --TTTCATWAAAT- AWTAAATAYAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Reverse Complement Reverse Complement AAWTTHWWYWWAWT TGATTTTAWKATTT TRATTTTAWBATWTT Direction: Forward Position #: 2 Overlap #: 13 Alignment: -AAWTTHWWYWWAWT TGATTTTAWKATTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Combined Motif Original Motif Reverse Complement TRATTTTAWBATWTT TTATWAWCTAA TRWTWTWAWCWWATT Direction: Forward Position #: 3 Overlap #: 11 Alignment: TRATTTTAWBATWTT --TTATWAWCTAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Reverse Complement TRWTWTWAWCWWATT TTTTATTGTYAT TDTTATTRTYATATT Direction: Forward Position #: 1 Overlap #: 12 Alignment: TRWTWTWAWCWWATT TTTTATTGTYAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Reverse Complement Original Motif AATATKAMAATAADA AATHATATWTHAAA AATWWTAHWWHAAAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AATATKAMAATAADA AATHATATWTHAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Original Motif Reverse Complement AATWWTAHWWHAAAA TWTAATCTAWGAA WWTAATMTAWGAAAA Direction: Forward Position #: 1 Overlap #: 13 Alignment: AATWWTAHWWHAAAA TWTAATCTAWGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Original Motif Reverse Complement WWTAATMTAWGAAAA WWTAKTTCDKAATT WWTWATTTMWKAAWW Direction: Forward Position #: 2 Overlap #: 14 Alignment: WWTAATMTAWGAAAA -WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Reverse Complement Reverse Complement WWTTYWRAAATWAWW TWSTTTWAWTTTWT TWBTTTWAWWTWATW Direction: Forward Position #: 1 Overlap #: 14 Alignment: WWTTYWRAAATWAWW TWSTTTWAWTTTWT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Reverse Complement TWBTTTWAWWTWATW DDTATTATTTDH WWTWTTAWWTWWATW Direction: Forward Position #: 1 Overlap #: 12 Alignment: TWBTTTWAWWTWATW DDTATTATTTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 10 Combined Motif Original Motif Original Motif WWTWTTAWWTWWATW TTTCATAAWT WWTWTTAWTTTCATAAWT Direction: Forward Position #: 9 Overlap #: 7 Alignment: WWTWTTAWWTWWATW--- --------TTTCATAAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 12 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 12 Motif 15 Original Motif Original Motif AAAACAAA ATMACAATAAAA ATMAMAAYAAAA Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---AAAACAAA- ATMACAATAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 17 Reverse Complement Reverse Complement TTTTKTTYTYAT ATTCATTTTT WTTYDTTTTTAT Direction: Forward Position #: 1 Overlap #: 10 Alignment: TTTTKTTYTYAT ATTCATTTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Original Motif ATAAAAADKAAW AWTAAATAYAATTT ATAAWAAATAHAATTT Direction: Forward Position #: 3 Overlap #: 10 Alignment: ATAAAAADKAAW---- --AWTAAATAYAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Original Motif ATAAWAAATAHAATTT ACAAWTRATTTTGA ATAACAAWTAAWWTTKA Direction: Forward Position #: 4 Overlap #: 13 Alignment: ATAAWAAATAHAATTT- ---ACAAWTRATTTTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Original Motif Original Motif ATAACAAWTAAWWTTKA AWAAATAA ATAAAWAATAAWWTTKA Direction: Forward Position #: 1 Overlap #: 8 Alignment: ATAACAAWTAAWWTTKA AWAAATAA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Reverse Complement TYAAWWTTATTWTTTAT TWSTTTWAWTTTWT TYAWWHTTWTWWTTTAT Direction: Forward Position #: 4 Overlap #: 14 Alignment: TYAAWWTTATTWTTTAT ---TWSTTTWAWTTTWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 18 Reverse Complement Original Motif ATAAAWWAWAAHWWTKA TTAGWTWATAA WTARATWATAAHWWTKA Direction: Forward Position #: 1 Overlap #: 11 Alignment: ATAAAWWAWAAHWWTKA TTAGWTWATAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Reverse Complement WTARATWATAAHWWTKA TGATTTTAWKATTT TKAKTTTAWDATTTTKA Direction: Forward Position #: 1 Overlap #: 14 Alignment: WTARATWATAAHWWTKA TGATTTTAWKATTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Original Motif TYAAAATDWTAAARTYA AATTYDGAARTAWW TYAAAWTBWKAAAWWHW Direction: Forward Position #: 4 Overlap #: 14 Alignment: TYAAAATDWTAAARTYA ---AATTYDGAARTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Reverse Complement Original Motif WHWWTTTRWVAWTTTKA AAAAWTTRCWT AAAAWTTRYHWWTTTKA Direction: Forward Position #: 1 Overlap #: 11 Alignment: WHWWTTTRWVAWTTTKA AAAAWTTRCWT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 13 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 13 Motif 20 Original Motif Original Motif AAAGATTT TTMAAAGATTT TTMAAAGATTT Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---AAAGATTT TTMAAAGATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Original Motif TTMAAAGATTT ACAAWTRATTTTGA WYAAAWGATTTTGA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTMAAAGATTT--- ACAAWTRATTTTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif WYAAAWGATTTTGA AAATRWTAAAATCA AAATRWTAAAATMAAWGATTTTGA Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------WYAAAWGATTTTGA AAATRWTAAAATCA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Reverse Complement Original Motif TCAAAATCWTTRATTTTAWKATTT TTCWTAGATTAWA TCAAAWTCWTWGATTWTAWKATTT Direction: Forward Position #: 6 Overlap #: 13 Alignment: TCAAAATCWTTRATTTTAWKATTT -----TTCWTAGATTAWA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Original Motif AAATYWTAWAATCWAWGAWTTTGA AWTAAATAYAATTT AAATYATWAAATMHAAKWTTTTGA Direction: Forward Position #: 6 Overlap #: 14 Alignment: AAATYWTAWAATCWAWGAWTTTGA -----AWTAAATAYAATTT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Original Motif Original Motif AAATYATWAAATMHAAKWTTTTGA AAAAWTTRCWT AAAWYWTWMAWTMHAAKWTTTTGA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAATYATWAAATMHAAKWTTTTGA AAAAWTTRCWT------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Combined Motif Reverse Complement Original Motif TCAAAAWRTTHYAWTYWAWMWTTT AAAAATGAAT TCAAAAAAWTDWATTYWAWMWTTT Direction: Forward Position #: 5 Overlap #: 10 Alignment: TCAAAAWRTTHYAWTYWAWMWTTT ----AAAAATGAAT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Original Motif Reverse Complement TCAAAAAAWTDWATTYWAWMWTTT HCAGAATGTHD TCARAAWRTTDWATTYWAWMWTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TCAAAAAAWTDWATTYWAWMWTTT HCAGAATGTHD------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 14 Reverse Complement Original Motif AAAWYWTWMAATWHAAMWTTKTGA AWAAATAA AAAAATWAMAATWHAAMWTTKTGA Direction: Forward Position #: 1 Overlap #: 8 Alignment: AAAWYWTWMAATWHAAMWTTKTGA AWAAATAA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Original Motif AAAAATWAMAATWHAAMWTTKTGA HDAAATAATAHW AAAAATWAAAWWWTAWHWTTKTGA Direction: Forward Position #: 6 Overlap #: 12 Alignment: AAAAATWAMAATWHAAMWTTKTGA -----HDAAATAATAHW------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 14 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Motif 17 Reverse Complement Reverse Complement TTATTTWT ATTCATTTTT ATTYATTTTT Direction: Forward Position #: 3 Overlap #: 8 Alignment: --TTATTTWT ATTCATTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Reverse Complement AAAAATKAAT AAATTKTATTTAWT AAAAWTKWATTTAWT Direction: Forward Position #: 2 Overlap #: 9 Alignment: AAAAATKAAT----- -AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Original Motif AWTAAATWYAWTTTT ATMACAATAAAA AWHWMAATAHAATTTT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -AWTAAATWYAWTTTT ATMACAATAAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Original Motif Original Motif AWHWMAATAHAATTTT ACAAWTRATTTTGA AWHACAATWDAWTTTKA Direction: Forward Position #: 4 Overlap #: 13 Alignment: AWHWMAATAHAATTTT- ---ACAAWTRATTTTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Reverse Complement AWHACAATWDAWTTTKA DDTATTATTTDH AWTAYWATTWAWTTTKA Direction: Forward Position #: 1 Overlap #: 12 Alignment: AWHACAATWDAWTTTKA DDTATTATTTDH----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Reverse Complement AWTAYWATTWAWTTTKA WHTATTATTTDH AWTAHTATTWWTTTTKA Direction: Forward Position #: 4 Overlap #: 12 Alignment: AWTAYWATTWAWTTTKA ---WHTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Reverse Complement AWTAHTATTWWTTTTKA TGATTTTAWKATTT TRATTTTATTATTTTTKA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -AWTAHTATTWWTTTTKA TGATTTTAWKATTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 18 Original Motif Original Motif TRATTTTATTATTTTTKA TTAGWTWATAA TTAKWTTATWATTTTTKA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TRATTTTATTATTTTTKA TTAGWTWATAA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 12 Original Motif Reverse Complement TTAKWTTATWATTTTTKA TTTGTTTT TTWGTTTWTWATTTTTKA Direction: Forward Position #: 1 Overlap #: 8 Alignment: TTAKWTTATWATTTTTKA TTTGTTTT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Reverse Complement Original Motif TYAAAAATWAWAAACWAA DBGTAAATAHD TYDWAAATAAWAAACWAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: TYAAAAATWAWAAACWAA DBGTAAATAHD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 15 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Motif 8 Reverse Complement Reverse Complement TTTTATTGTYAT TGATTTTAWKATTT TTTKWTWTTRTBAT Direction: Backward Position #: 3 Overlap #: 12 Alignment: TTTTATTGTYAT-- TGATTTTAWKATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Reverse Complement Original Motif ATVAKAAWAWYAAA AWTAAATAYAATTT ATAWTAAAWAYAAWTT Direction: Forward Position #: 3 Overlap #: 12 Alignment: ATVAKAAWAWYAAA-- --AWTAAATAYAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Reverse Complement Reverse Complement AAWTTKTWTTTAWTAT TWSTTTWAWTTTWT WAHTTTTWWTTWWTAT Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAWTTKTWTTTAWTAT TWSTTTWAWTTTWT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Original Motif WAHTTTTWWTTWWTAT AATTYDGAARTAWW AATTTDKAADTAWTAT Direction: Forward Position #: 1 Overlap #: 14 Alignment: WAHTTTTWWTTWWTAT AATTYDGAARTAWW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Reverse Complement Original Motif ATAWTADTTYDAAATT AATHATATWTHAAA AWWWWWATTTDAAATT Direction: Forward Position #: 1 Overlap #: 14 Alignment: ATAWTADTTYDAAATT AATHATATWTHAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Original Motif Original Motif AWWWWWATTTDAAATT ACAAWTRATTTTGA ACAAWTRAWTTTGAAATT Direction: Forward Position #: 3 Overlap #: 12 Alignment: --AWWWWWATTTDAAATT ACAAWTRATTTTGA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 11 Combined Motif Reverse Complement Original Motif AATTTCAAAWTKAWTTGT ATTTWATGAAA AATTTHAWRAWAAWTTGT Direction: Forward Position #: 2 Overlap #: 11 Alignment: AATTTCAAAWTKAWTTGT -ATTTWATGAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Original Motif Reverse Complement AATTTHAWRAWAAWTTGT TWTAATCTAWGAA TWWAWTYTAWGAAAAWTTGT Direction: Forward Position #: 3 Overlap #: 11 Alignment: --AATTTHAWRAWAAWTTGT TWTAATCTAWGAA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 18 Original Motif Reverse Complement TWWAWTYTAWGAAAAWTTGT TTATWAWCTAA TTATAATCTAAGAAAAWTTGT Direction: Forward Position #: 2 Overlap #: 10 Alignment: -TWWAWTYTAWGAAAAWTTGT TTATWAWCTAA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tkAAATAATAtw Original Motif Original Motif TTATAATCTAAGAAAAWTTGT HDAAATAATAHW TTAWAWWMTAWDAAAAWTTGT Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTATAATCTAAGAAAAWTTGT HDAAATAATAHW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 16 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Motif 5 Reverse Complement Original Motif TCAAAATKAWTTGT AWTAAATAYAATTT WHWAAATDHAWTKT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TCAAAATKAWTTGT AWTAAATAYAATTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Original Motif AYAWTHDATTTWDW AATHATATWTHAAA AYAWTHWWWTTTDAAA Direction: Forward Position #: 3 Overlap #: 12 Alignment: AYAWTHDATTTWDW-- --AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tkAAATAATAtw Reverse Complement Reverse Complement TTTHAAAWWWHAWTKT WHTATTATTTDH THTAWWATTTHAWTKT Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTTHAAAWWWHAWTKT WHTATTATTTDH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Reverse Complement THTAWWATTTHAWTKT DDTATTATTTDH THTHWTATTWTWTTDT Direction: Forward Position #: 4 Overlap #: 12 Alignment: THTAWWATTTHAWTKT ---DDTATTATTTDH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Reverse Complement Original Motif ADAAWAWAATAWHAHA AAATRWTAAAATCA AAAWRWTAAWATCAHA Direction: Forward Position #: 1 Overlap #: 14 Alignment: ADAAWAWAATAWHAHA AAATRWTAAAATCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Reverse Complement THTGATWTTAWKWTTT TTTTATTGTYAT TTTTATTKTHATWTTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: THTGATWTTAWKWTTT TTTTATTGTYAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Reverse Complement TTTTATTKTHATWTTT WWTAKTTCDKAATT TTTWDTTBTDAWTTTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTTTATTKTHATWTTT WWTAKTTCDKAATT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Reverse Complement Original Motif AAAAWTDABAADWAAA AAAAWTTRCWT AAAAATWWDMATWAAA Direction: Forward Position #: 2 Overlap #: 11 Alignment: AAAAWTDABAADWAAA -AAAAWTTRCWT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 20 Original Motif Reverse Complement AAAAATWWDMATWAAA AAATCTTTYAA AAAWMTTTBAATWAAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAAATWWDMATWAAA AAATCTTTYAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh Combined Motif Reverse Complement Original Motif TTTWATTVAAARWTTT DHACATTCTGH TTTWATTDAAMATTYTGH Direction: Forward Position #: 8 Overlap #: 9 Alignment: TTTWATTVAAARWTTT-- -------DHACATTCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 17 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 17 Motif 16 Reverse Complement Original Motif ATTCATTTTT ACAAWTRATTTTGA AMWWHWDWTTTTGA Direction: Forward Position #: 2 Overlap #: 10 Alignment: -ATTCATTTTT--- ACAAWTRATTTTGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Original Motif TCAAAAWDWDWWYT ATMACAATAAAA ATCAMAATAAAAWYT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -TCAAAAWDWDWWYT ATMACAATAAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Original Motif Original Motif ATCAMAATAAAAWYT TTTCATAAWT TWTCAHAAWWAAAWYT Direction: Forward Position #: 2 Overlap #: 9 Alignment: -ATCAMAATAAAAWYT TTTCATAAWT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Reverse Complement AKWTTTWWTTHTGAWA AAATTKTATTTAWT AADTTKTATTTATKAWA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -AKWTTTWWTTHTGAWA AAATTKTATTTAWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 4 Original Motif Original Motif AADTTKTATTTATKAWA AAAAWTTRCWT AAAWTTTAYTTATKAWA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AADTTKTATTTATKAWA AAAAWTTRCWT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh Combined Motif Reverse Complement Reverse Complement TWTRATAAMTAAAWTTT HCAGAATGTHD TWTRATAAHYARAATKTHD Direction: Forward Position #: 9 Overlap #: 9 Alignment: TWTRATAAMTAAAWTTT-- --------HCAGAATGTHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif TWTRATAAHYARAATKTHD AAATRWTAAAATCA AWATRWTAAAAWSAATKTHD Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TWTRATAAHYARAATKTHD AAATRWTAAAATCA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif AWATRWTAAAAWSAATKTHD AWAAAWTWAAASWA AWATAWWAAAWWMAABKWHD Direction: Forward Position #: 5 Overlap #: 14 Alignment: AWATRWTAAAAWSAATKTHD ----AWAAAWTWAAASWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Reverse Complement Reverse Complement DHWRVTTYWWTTTWWTATWT TTTDAWATATHATT DHWRTTTBAWWTWWWDWTWT Direction: Forward Position #: 5 Overlap #: 14 Alignment: DHWRVTTYWWTTTWWTATWT ----TTTDAWATATHATT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 20 Original Motif Reverse Complement DHWRTTTBAWWTWWWDWTWT AAATCTTTYAA AAATVTTTYAAWTWWWDWTWT Direction: Forward Position #: 2 Overlap #: 10 Alignment: -DHWRTTTBAWWTWWWDWTWT AAATCTTTYAA---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 18 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Motif 6 Reverse Complement Original Motif TTATWAWCTAA AATTYDGAARTAWW AWTWTWRAMDAAWW Direction: Forward Position #: 2 Overlap #: 11 Alignment: -TTATWAWCTAA-- AATTYDGAARTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Original Motif AWTWTWRAMDAAWW AAATRWTAAAATCA AAATDTTAAAATMAW Direction: Forward Position #: 2 Overlap #: 13 Alignment: -AWTWTWRAMDAAWW AAATRWTAAAATCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Original Motif AAATDTTAAAATMAW ATTTWATGAAA AWWTWATRAAATMAW Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAATDTTAAAATMAW ATTTWATGAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tkAAATAATAtw Reverse Complement Reverse Complement WTYATTTMATWAWWT WHTATTATTTDH WWTATTWHWTDAWWT Direction: Forward Position #: 1 Overlap #: 12 Alignment: WTYATTTMATWAWWT WHTATTATTTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Reverse Complement WWTATTWHWTDAWWT DDTATTATTTDH WHTATTATWTDAWWT Direction: Forward Position #: 1 Overlap #: 12 Alignment: WWTATTWHWTDAWWT DDTATTATTTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Reverse Complement WHTATTATWTDAWWT TTTDAWATATHATT WHTWTTAWWTWWWATT Direction: Forward Position #: 3 Overlap #: 13 Alignment: WHTATTATWTDAWWT- --TTTDAWATATHATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Reverse Complement Original Motif AATWWWAWWTAAWAHW TTCWTAGATTAWA AWTCWTAKATTAWAHW Direction: Forward Position #: 2 Overlap #: 13 Alignment: AATWWWAWWTAAWAHW -TTCWTAGATTAWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 15 Combined Motif Original Motif Original Motif AWTCWTAKATTAWAHW ATMACAATAAAA AWTCWTAKATHACAATAAAA Direction: Forward Position #: 9 Overlap #: 8 Alignment: AWTCWTAKATTAWAHW---- --------ATMACAATAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Original Motif TTTTATTGTHATYTAWGAWT AWTAAATAYAATTT WTTWAWTATAATTTAWGAWT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTTTATTGTHATYTAWGAWT AWTAAATAYAATTT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Reverse Complement Original Motif AWTCWTAAATTATAWTWAAW AWAAAWTWAAASWA AWTCATAAATTAWAWBWAAW Direction: Forward Position #: 5 Overlap #: 14 Alignment: AWTCWTAAATTATAWTWAAW ----AWAAAWTWAAASWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 19 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Motif 9 Original Motif Original Motif TTCWTAGATTAWA AATHATATWTHAAA AWTCWTAKATTAAA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -TTCWTAGATTAWA AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Reverse Complement Reverse Complement TTTAATYTAWGAWT WWTAKTTCDKAATT TWTADTTYWTRATT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TTTAATYTAWGAWT WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Reverse Complement Original Motif AATKAWMAADTAWA AAATRWTAAAATCA AAATDWTAAAATMAA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -AATKAWMAADTAWA AAATRWTAAAATCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tkAAATAATAtw Reverse Complement Reverse Complement TTYATTTTAWHATTT WHTATTATTTDH WWTATTWTWTHATTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTYATTTTAWHATTT WHTATTATTTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Reverse Complement WWTATTWTWTHATTT DDTATTATTTDH WHTATTATTTHATTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: WWTATTWTWTHATTT DDTATTATTTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Original Motif AAATHAAATAATAHW AWTAAATAYAATTT AAWAAATATAATWTW Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAATHAAATAATAHW AWTAAATAYAATTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 20 Original Motif Reverse Complement AAWAAATATAATWTW AAATCTTTYAA AAATMWTWYAATWTW Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAWAAATATAATWTW AAATCTTTYAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Original Motif AAATMWTWYAATWTW ATTTWATGAAA AWWTHATKWAATWTW Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAATMWTWYAATWTW ATTTWATGAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 18 Original Motif Reverse Complement AWWTHATKWAATWTW TTATWAWCTAA WTATWATCTAATWTW Direction: Forward Position #: 1 Overlap #: 11 Alignment: AWWTHATKWAATWTW TTATWAWCTAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Original Motif Reverse Complement WTATWATCTAATWTW TTTTATTGTYAT TTWTAWTGTHATWTW Direction: Forward Position #: 1 Overlap #: 12 Alignment: WTATWATCTAATWTW TTTTATTGTYAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 20 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 20 Motif 19 Original Motif Original Motif TTMAAAGATTT TTCWTAGATTAWA WATTCAWAGATTW Direction: Backward Position #: 3 Overlap #: 11 Alignment: TTMAAAGATTT-- TTCWTAGATTAWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Reverse Complement Original Motif WAATCTWTGAATW AAATRWTAAAATCA AAATVTTWRAATHA Direction: Forward Position #: 1 Overlap #: 13 Alignment: WAATCTWTGAATW- AAATRWTAAAATCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Reverse Complement TDATTKWAAVATTT TCAAAATKAWTTGT TCAAAATKAWTTRTTKWAAVATTT Direction: Forward Position #: 11 Overlap #: 4 Alignment: ----------TDATTKWAAVATTT TCAAAATKAWTTGT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement TCAAAATKAWTTRTTKWAAVATTT AAATTKTATTTAWT TCAAAAWDWTTTATTTAWWVATTT Direction: Forward Position #: 6 Overlap #: 14 Alignment: TCAAAATKAWTTRTTKWAAVATTT -----AAATTKTATTTAWT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Reverse Complement TCAAAAWDWTTTATTTAWWVATTT TTTDAWATATHATT TYWAAAWTWTTWWTTTAWWVATTT Direction: Forward Position #: 1 Overlap #: 14 Alignment: TCAAAAWDWTTTATTTAWWVATTT TTTDAWATATHATT---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Original Motif Reverse Complement TYWAAAWTWTTWWTTTAWWVATTT AWGKAAWTTTT TYWAAAWKWWWWTTTTAWWVATTT Direction: Forward Position #: 6 Overlap #: 11 Alignment: TYWAAAWTWTTWWTTTAWWVATTT -----AWGKAAWTTTT-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tkAAATAATAtw Original Motif Original Motif TYWAAAWKWWWWTTTTAWWVATTT HDAAATAATAHW TBWAAWADTAWWTTTTAWWVATTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: TYWAAAWKWWWWTTTTAWWVATTT HDAAATAATAHW------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 15 Reverse Complement Original Motif AAATVWWTAAAAWWTADTWTTWBA ATMACAATAAAA AWAWCAATAAAAWWTADTWTTWBA Direction: Forward Position #: 1 Overlap #: 12 Alignment: AAATVWWTAAAAWWTADTWTTWBA ATMACAATAAAA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Original Motif AWAWCAATAAAAWWTADTWTTWBA AATTYDGAARTAWW AAWTCARWAAWAWWTADTWTTWBA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AWAWCAATAAAAWWTADTWTTWBA AATTYDGAARTAWW---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Original Motif AAWTCARWAAWAWWTADTWTTWBA ATTTWATGAAA AWTTHATRAAAAWWTADTWTTWBA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAWTCARWAAWAWWTADTWTTWBA ATTTWATGAAA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 21 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 21 Motif 15 Reverse Complement Reverse Complement TTTTAT TTTTATTGTYAT TTTTATTGTYAT Direction: Forward Position #: 1 Overlap #: 6 Alignment: TTTTAT------ TTTTATTGTYAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 5 Combined Motif Original Motif Reverse Complement TTTTATTGTYAT AAATTKTATTTAWT TTWWATTGTHWTTAWT Direction: Forward Position #: 3 Overlap #: 10 Alignment: TTTTATTGTYAT---- --AAATTKTATTTAWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 11 Original Motif Reverse Complement TTWWATTGTHWTTAWT TTTCATWAAAT TTTHATTRWATTTAWT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTWWATTGTHWTTAWT TTTCATWAAAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Reverse Complement Original Motif AWTAAATWKAATDAAA AAATRWTAAAATCA AAWWAWTAAAATBAAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AWTAAATWKAATDAAA AAATRWTAAAATCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 10 Reverse Complement Original Motif TTTBATTTTAWTWWTT TTTCATAAWT TTTCATWAWWWTWWTT Direction: Forward Position #: 1 Overlap #: 10 Alignment: TTTBATTTTAWTWWTT TTTCATAAWT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 19 Combined Motif Reverse Complement Original Motif AAWWAWWWTWATGAAA TTCWTAGATTAWA AAWTWMWTAKATKAAA Direction: Forward Position #: 4 Overlap #: 13 Alignment: AAWWAWWWTWATGAAA ---TTCWTAGATTAWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 14 Combined Motif Reverse Complement Reverse Complement TTTRATYTAWRWAWTT TTATTTWT TTTAWTTWWWRWAWTT Direction: Forward Position #: 2 Overlap #: 8 Alignment: TTTRATYTAWRWAWTT -TTATTTWT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 20 Reverse Complement Reverse Complement AAWTWMWWWAAWTAAA AAATCTTTYAA AAATHTTTHAAWTAAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAWTWMWWWAAWTAAA AAATCTTTYAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Reverse Complement Reverse Complement TTTAWTTHAAADATTT DDTATTATTTDH TTTATTWTWWHDATTT Direction: Forward Position #: 1 Overlap #: 12 Alignment: TTTAWTTHAAADATTT DDTATTATTTDH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Reverse Complement Original Motif AAATHHWWAWAATAAA AWAAAWTWAAASWA AWAWAWWWAWAVTAAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAATHHWWAWAATAAA AWAAAWTWAAASWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 22 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Zfx Original Motif Original Motif BBVGCCBVGGCCTV BBVGCCBVGGCCTV BBVGCCBVGGCCTV Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBVGCCBVGGCCTV BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Original Motif BBVGCCBVGGCCTV BCCGCCCCGCCCCBB BBSGCCCCGSCCYBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBVGCCBVGGCCTV- BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif BBMGGSCGGGGCSBB DGVBCABTGDWGCGKRRCSR BBVGGSCRBKGVDGVGKRRCSR Direction: Forward Position #: 3 Overlap #: 13 Alignment: BBMGGSCGGGGCSBB------- --DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Reverse Complement MSGKKRCVCHVCYBKGSCCBBB MSGKKRCGCWDCABTGBBCD MSGKKRCGCHDCHBBGBBCDBB Direction: Forward Position #: 1 Overlap #: 20 Alignment: MSGKKRCVCHVCYBKGSCCBBB MSGKKRCGCWDCABTGBBCD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Reverse Complement Reverse Complement BBDGBBCVBDGHHGCGKRYCSR BBGGGGCGGGGCVD BBGGGGCGGGGCVGCGKRYCSR Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBDGBBCVBDGHHGCGKRYCSR BBGGGGCGGGGCVD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Original Motif BBGGGGCGGGGCVGCGKRYCSR GGGGCCCAAGGGGG BBGGGGCSVDRBGGSGKRYCSR Direction: Forward Position #: 3 Overlap #: 14 Alignment: BBGGGGCGGGGCVGCGKRYCSR --GGGGCCCAAGGGGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Original Motif BBGGGGCSVDRBGGSGKRYCSR GGGGCCCAAGGGGG GGGGSSCHVGGGGGSGKRYCSR Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBGGGGCSVDRBGGSGKRYCSR GGGGCCCAAGGGGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif MSGKKRCSCCCCCBHGSSCCCC CSKCCCCGCCCCSY MSGBBRCCCCSCCCCGBSCCCC Direction: Forward Position #: 4 Overlap #: 14 Alignment: MSGKKRCSCCCCCBHGSSCCCC ---CSKCCCCGCCCCSY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA Combined Motif Original Motif Reverse Complement MSGBBRCCCCSCCCCGBSCCCC VVCACTTCCGG MSGBBVCMCYTCCSSGBSCCCC Direction: Forward Position #: 5 Overlap #: 11 Alignment: MSGBBRCCCCSCCCCGBSCCCC ----VVCACTTCCGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA Combined Motif Original Motif Reverse Complement MSGBBVCMCYTCCSSGBSCCCC VVCACTTCCGG MSGBBVCMCTTCCGGGBSCCCC Direction: Forward Position #: 5 Overlap #: 11 Alignment: MSGBBVCMCYTCCSSGBSCCCC ----VVCACTTCCGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 23 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 Egr1 Original Motif Original Motif HGCGTGGGCGK HGCGTGGGCGK HGCGTGGGCGK Direction: Forward Position #: 1 Overlap #: 11 Alignment: HGCGTGGGCGK HGCGTGGGCGK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Original Motif YCGCCCACGCH BCCGCCCCGCCCCBB YCBSCCMCGCCCCBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: YCGCCCACGCH---- BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement BBGGGGCGRGGSBGK VAGGCCBBGGCVBB BBGRGGCSVGGSCGBB Direction: Forward Position #: 3 Overlap #: 13 Alignment: BBGGGGCGRGGSBGK- --VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Original Motif BBCGSCCVSGCCKCBB BBVGCCBVGGCCTV BBSGSCBVGGCCTSBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBCGSCCVSGCCKCBB BBVGCCBVGGCCTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif BBSAGGCCVBGSCSBB DGVBCABTGDWGCGKRRCSR BBSRGGCCVBKGVDGCGKRRCSR Direction: Forward Position #: 4 Overlap #: 13 Alignment: BBSAGGCCVBGSCSBB------- ---DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif BBSRGGCCVBKGVDGCGKRRCSR DGVBCABTGDWGCGKRRCSR BBVRRGCMVBGVDGSVKDRVCVR Direction: Forward Position #: 3 Overlap #: 20 Alignment: BBSRGGCCVBKGVDGCGKRRCSR --DGVBCABTGDWGCGKRRCSR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Original Motif Reverse Complement BBVRRGCMVBGVDGSVKDRVCVR MSGGGGCGGGGYSG VSGGGGCGGKGBVGSVKDRVCVR Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBVRRGCMVBGVDGSVKDRVCVR MSGGGGCGGGGYSG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Original Motif MVGVKHYVSCVBCYCCGCCCCSB HVGCCCCGCCCCBB MVGVBHBCCCCGCCCCGCCCCSB Direction: Forward Position #: 5 Overlap #: 14 Alignment: MVGVKHYVSCVBCYCCGCCCCSB ----HVGCCCCGCCCCBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Reverse Complement Reverse Complement VSGGGGCGGGGCGGGGBDVVCVR GGGGGYGGGG VGGGGBSGGGGCGGGGBDVVCVR Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSGGGGCGGGGCGGGGBDVVCVR GGGGGYGGGG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Original Motif Reverse Complement VGGGGBSGGGGCGGGGBDVVCVR GGGGGYGGGG GGGGGBGGGGGCGGGGBDVVCVR Direction: Forward Position #: 1 Overlap #: 10 Alignment: VGGGGBSGGGGCGGGGBDVVCVR GGGGGYGGGG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 24 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 SP1 Original Motif Original Motif CCCCKCCCCC CCCCKCCCCC CCCCKCCCCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: CCCCKCCCCC CCCCKCCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Reverse Complement GGGGGYGGGG MSGGGGCGGGGYSG GVGGGGGSGGGGYSG Direction: Forward Position #: 2 Overlap #: 9 Alignment: GGGGGYGGGG----- -MSGGGGCGGGGYSG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Reverse Complement Original Motif CSKCCCCSCCCCCVC HVGCCCCGCCCCBB CSGCCCCGCCCCBVC Direction: Forward Position #: 1 Overlap #: 14 Alignment: CSKCCCCSCCCCCVC HVGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Reverse Complement GVBGGGGCGGGGCSG BBGGGGCGGGGCGGB GBGGGGSSGGGSSGB Direction: Forward Position #: 1 Overlap #: 15 Alignment: GVBGGGGCGGGGCSG BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Original Motif BCSSCCCSSCCCCBC BBVGCCBVGGCCTV BVSSCCCSGSCCYVC Direction: Forward Position #: 1 Overlap #: 14 Alignment: BCSSCCCSSCCCCBC BBVGCCBVGGCCTV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Original Motif BVSSCCCSGSCCYVC BBVGCCBVGGCCTV BBVGCCBVGGCCTVC Direction: Forward Position #: 1 Overlap #: 14 Alignment: BVSSCCCSGSCCYVC BBVGCCBVGGCCTV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Reverse Complement BBVGCCBVGGCCTVC CCCCCTTGGGCCCC CCCCCYHVGGCCYCC Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBVGCCBVGGCCTVC CCCCCTTGGGCCCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Reverse Complement CCCCCYHVGGCCYCC CCCCCTTGGGCCCC CCCCCYTVGGCCCCC Direction: Forward Position #: 1 Overlap #: 14 Alignment: CCCCCYHVGGCCYCC CCCCCTTGGGCCCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Reverse Complement CCCCCYTVGGCCCCC GCCYCMCCCD GCCCCCCYCGGCCCCC Direction: Forward Position #: 2 Overlap #: 9 Alignment: -CCCCCYTVGGCCCCC GCCYCMCCCD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Reverse Complement GCCCCCCYCGGCCCCC GCCYCMCCCD GCCYCMCCCDGCCCCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCCCCCYCGGCCCCC GCCYCMCCCD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 25 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFAP2A TFAP2A Original Motif Original Motif GCCBBVRGS GCCBBVRGS GCCBBVRGS Direction: Backward Position #: 1 Overlap #: 9 Alignment: GCCBBVRGS GCCBBVRGS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif GCCBBVRGS BBVGCCBVGGCCTV GCCBBSVGVGGCCTV Direction: Forward Position #: 2 Overlap #: 8 Alignment: GCCBBVRGS------ -BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif GCCBBSVGVGGCCTV BBVGCCBVGGCCTV GCSBVVSBBGGSCYTV Direction: Forward Position #: 3 Overlap #: 13 Alignment: GCCBBSVGVGGCCTV- --BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Reverse Complement GCSBVVSBBGGSCYTV CCCCCTTGGGCCCC GCCCCCCYDGGSCCYC Direction: Forward Position #: 3 Overlap #: 14 Alignment: GCSBVVSBBGGSCYTV --CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Original Motif GKGGSCCDMGGGGGGC GGGGCCCAAGGGGG GGGGCCCWMGGGGGGC Direction: Forward Position #: 1 Overlap #: 14 Alignment: GKGGSCCDMGGGGGGC GGGGCCCAAGGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Reverse Complement Reverse Complement GCCCCCCYWGGGCCCC GCCACGTGSD GCCMCSYGBRGGCCCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCCCCCYWGGGCCCC GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement GCCMCSYGBRGGCCCC GCCACGTGSD GCCMCGTGBDGGCCCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCMCSYGBRGGCCCC GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Original Motif GGGGCCHBCACGYGGC DGVBCABTGDWGCGKRRCSR GGGGCMVBSAVGYGKVRCSR Direction: Forward Position #: 1 Overlap #: 16 Alignment: GGGGCCHBCACGYGGC---- DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif GGGGCMVBSAVGYGKVRCSR DGVBCABTGDWGCGKRRCSR DGVGCMVYSAHGCGKVRCSR Direction: Forward Position #: 1 Overlap #: 20 Alignment: GGGGCMVBSAVGYGKVRCSR DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Reverse Complement Reverse Complement MSGKBRCGCHTSMVYGCVCH DCCACGTGCV MSGKBVCVCGTGVVYGCVCH Direction: Forward Position #: 5 Overlap #: 10 Alignment: MSGKBRCGCHTSMVYGCVCH ----DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 26 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF MIZF Original Motif Original Motif BAACGTCCGC BAACGTCCGC BAACGTCCGC Direction: Forward Position #: 1 Overlap #: 10 Alignment: BAACGTCCGC BAACGTCCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif GABPA Reverse Complement Original Motif GCGGACGTTV CCGGAAGTGVV SCGGAMGTDVV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCGGACGTTV- CCGGAAGTGVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif GABPA Original Motif Original Motif SCGGAMGTDVV CCGGAAGTGVV SCGGAAGTDVV Direction: Forward Position #: 1 Overlap #: 11 Alignment: SCGGAMGTDVV CCGGAAGTGVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Reverse Complement Original Motif VVHACTTCCGS BCACCTGCABC BVAMCTKCMGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: VVHACTTCCGS BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Original Motif Original Motif BVAMCTKCMGS DHACATTCTGH DHACMTTCTGH Direction: Forward Position #: 1 Overlap #: 11 Alignment: BVAMCTKCMGS DHACATTCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 27 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Klf4 Original Motif Original Motif DGGGYGKGGC DGGGYGKGGC DGGGYGKGGC Direction: Forward Position #: 1 Overlap #: 10 Alignment: DGGGYGKGGC DGGGYGKGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif GCCYCMCCCD CSKCCCCGCCCCSY GCCBCCCCSHCCCSY Direction: Forward Position #: 2 Overlap #: 9 Alignment: GCCYCMCCCD----- -CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Original Motif GCCBCCCCSHCCCSY HVGCCCCGCCCCBB GCCBSCCCCGCCCCBB Direction: Forward Position #: 3 Overlap #: 13 Alignment: GCCBCCCCSHCCCSY- --HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Reverse Complement BBGGGGCGGGGSBGGC BBGGGGCGGGGCGGB BBGGGGCGGGGCBGGC Direction: Forward Position #: 1 Overlap #: 15 Alignment: BBGGGGCGGGGSBGGC BBGGGGCGGGGCGGB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Original Motif GCCBGCCCCGCCCCBB BBVGCCBVGGCCTV GBVBSCCCSGCCYSBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: GCCBGCCCCGCCCCBB BBVGCCBVGGCCTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Original Motif GBVBSCCCSGCCYSBB BBVGCCBVGGCCTV BBVGSCBMGGCCTSBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: GBVBSCCCSGCCYSBB BBVGCCBVGGCCTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Original Motif Reverse Complement BBVGSCBMGGCCTSBB GGGGGYGGGG GGGGGCGGGGCCTSBB Direction: Forward Position #: 1 Overlap #: 10 Alignment: BBVGSCBMGGCCTSBB GGGGGYGGGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Original Motif Reverse Complement GGGGGCGGGGCCTSBB GGGGGYGGGG GGGGGYGGGGCCTSBB Direction: Forward Position #: 1 Overlap #: 10 Alignment: GGGGGCGGGGCCTSBB GGGGGYGGGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Reverse Complement Reverse Complement BBSAGGCCCCKCCCCC DCCACGTGCV DCCASGYSCVKCCCCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: BBSAGGCCCCKCCCCC DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement DCCASGYSCVKCCCCC DCCACGTGCV DCCACGTGCVKCCCCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCASGYSCVKCCCCC DCCACGTGCV------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 28 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- E2F1 E2F1 Original Motif Original Motif TTTSGCGC TTTSGCGC TTTSGCGC Direction: Forward Position #: 1 Overlap #: 8 Alignment: TTTSGCGC TTTSGCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Original Motif GCGCSAAA GGGGCCCAAGGGGG GGSGCCAAAGGGGG Direction: Forward Position #: 2 Overlap #: 8 Alignment: -GCGCSAAA----- GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Original Motif GGSGCCAAAGGGGG GGGGCCCAAGGGGG GGGGCCMAAGGGGG Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGSGCCAAAGGGGG GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Original Motif Reverse Complement GGGGCCMAAGGGGG MBATTGGCTGH MAAGGGGGGGSKSCGGGGCCMA Direction: Backward Position #: 9 Overlap #: 6 Alignment: -----GGGGCCMAAGGGGG --------MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 29 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIF1AARNT HIF1AARNT Original Motif Original Motif VBACGTGV VBACGTGV VBACGTGV Direction: Backward Position #: 1 Overlap #: 8 Alignment: VBACGTGV VBACGTGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement VBACGTGV GCCACGTGSD GSCACGTGSD Direction: Forward Position #: 2 Overlap #: 8 Alignment: -VBACGTGV- GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement GSCACGTGSD GCCACGTGSD GCCACGTGSD Direction: Forward Position #: 1 Overlap #: 10 Alignment: GSCACGTGSD GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement GCCACGTGSD DCCACGTGCV GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSD DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Reverse Complement Original Motif VSCACGTGGC VGCACGTGGH VGCACGTGGC Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCACGTGGC VGCACGTGGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Reverse Complement Original Motif GCCACGTGCV BCACCTGCABC GBCACSTGCABC Direction: Forward Position #: 2 Overlap #: 9 Alignment: GCCACGTGCV-- -BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Reverse Complement Reverse Complement GBTGCASGTGBC SGGTCACGTGACCS SSKKCACGTGDCCS Direction: Forward Position #: 1 Overlap #: 12 Alignment: GBTGCASGTGBC-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Combined Motif Reverse Complement Reverse Complement SGGDCACGTGRYSS GCGGACGTTV SGSGSACGTKVYSS Direction: Forward Position #: 2 Overlap #: 10 Alignment: SGGDCACGTGRYSS -GCGGACGTTV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Combined Motif Original Motif Reverse Complement SGSGSACGTKVYSS GCGGACGTTV SGCGGACGTDVYSS Direction: Forward Position #: 2 Overlap #: 10 Alignment: SGSGSACGTKVYSS -GCGGACGTTV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement SGCGGACGTDVYSS MSGKKRCGCWDCABTGBBCD VGSGGACGYWDCVVTGBBCD Direction: Forward Position #: 1 Overlap #: 14 Alignment: SGCGGACGTDVYSS------ MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 30 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 PLAG1 Original Motif Original Motif GGGGCCCAAGGGGG GGGGCCCAAGGGGG GGGGCCCAAGGGGG Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGGGCCCAAGGGGG GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Original Motif CCCCCTTGGGCCCC BBVGCCBVGGCCTV CCCSCYDVGGCCYC Direction: Forward Position #: 1 Overlap #: 14 Alignment: CCCCCTTGGGCCCC BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Original Motif CCCSCYDVGGCCYC BBVGCCBVGGCCTV SSSSCYBVGGCCTS Direction: Forward Position #: 1 Overlap #: 14 Alignment: CCCSCYDVGGCCYC BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Original Motif SSSSCYBVGGCCTS BCCGCCCCGCCCCBB BCCGCCCCGSCCYBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: SSSSCYBVGGCCTS- BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif BBKGGSCGGGGCGGB DGVBCABTGDWGCGKRRCSR BBKGGSCVBKGVDGVGKRRCSR Direction: Forward Position #: 3 Overlap #: 13 Alignment: BBKGGSCGGGGCGGB------- --DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Reverse Complement MSGKKRCVCHVCYBBGSCCYBB MSGKKRCGCWDCABTGBBCD MSGKKRCGCHDCHBBGBBCHBB Direction: Forward Position #: 1 Overlap #: 20 Alignment: MSGKKRCVCHVCYBBGSCCYBB MSGKKRCGCWDCABTGBBCD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Original Motif Reverse Complement MSGKKRCGCHDCHBBGBBCHBB MSGGGGCGGGGYSG MSGGGGCGSDGCVBBGBBCHBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: MSGKKRCGCHDCHBBGBBCHBB MSGGGGCGGGGYSG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Reverse Complement MSGGGGCGSDGCVBBGBBCHBB BBGGGGCGGGGCVD VSGGGGCGGGGCVBBGBBCHBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: MSGGGGCGSDGCVBBGBBCHBB BBGGGGCGGGGCVD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Original Motif Reverse Complement VSGGGGCGGGGCVBBGBBCHBB GGGGGYGGGG VGGGGBSGGGGCVBBGBBCHBB Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSGGGGCGGGGCVBBGBBCHBB GGGGGYGGGG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Original Motif Reverse Complement VGGGGBSGGGGCVBBGBBCHBB GGGGGYGGGG GGGGGBGGGGGCVBBGBBCHBB Direction: Forward Position #: 1 Overlap #: 10 Alignment: VGGGGBSGGGGCVBBGBBCHBB GGGGGYGGGG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 31 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Pax5 Original Motif Original Motif DGVBCABTGDWGCGKRRCSR DGVBCABTGDWGCGKRRCSR DGVBCABTGDWGCGKRRCSR Direction: Backward Position #: 1 Overlap #: 20 Alignment: DGVBCABTGDWGCGKRRCSR DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Reverse Complement MSGKKRCGCWDCABTGBBCD BBGGGGCGGGGCGGB HSGGGGCGSKGCRBBGBBCD Direction: Forward Position #: 1 Overlap #: 15 Alignment: MSGKKRCGCWDCABTGBBCD BBGGGGCGGGGCGGB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Reverse Complement HSGGGGCGSKGCRBBGBBCD BBGGGGCGGGGCVD VBGGGGCGGGGCVBBGBBCD Direction: Forward Position #: 1 Overlap #: 14 Alignment: HSGGGGCGSKGCRBBGBBCD BBGGGGCGGGGCVD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif HGVBCVBVGCCCCGCCCCBV CSKCCCCGCCCCSY HGVBCVBCSCCSCSCCCCBV Direction: Forward Position #: 5 Overlap #: 14 Alignment: HGVBCVBVGCCCCGCCCCBV ----CSKCCCCGCCCCSY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 2 Original Motif Reverse Complement HGVBCVBCSCCSCSCCCCBV MTMMTCMMTCTKCK MDMVYVVCKCYKCBCCCCBV Direction: Forward Position #: 1 Overlap #: 14 Alignment: HGVBCVBCSCCSCSCCCCBV MTMMTCMMTCTKCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Reverse Complement Original Motif VBGGGGBGYMGRGVVKVRHR SGGTCACGTGACCS VBGSGGTSACGTGASSVRHR Direction: Forward Position #: 4 Overlap #: 14 Alignment: VBGGGGBGYMGRGVVKVRHR ---SGGTCACGTGACCS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Original Motif VBGSGGTSACGTGASSVRHR GGGGCCCAAGGGGG VGGGGSYSAMGGGGGSVRHR Direction: Forward Position #: 2 Overlap #: 14 Alignment: VBGSGGTSACGTGASSVRHR -GGGGCCCAAGGGGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Original Motif VGGGGSYSAMGGGGGSVRHR GGGGCCCAAGGGGG GGGGSSSHMRGGGGGGSVRHR Direction: Forward Position #: 2 Overlap #: 13 Alignment: -VGGGGSYSAMGGGGGSVRHR GGGGCCCAAGGGGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif GGGGSSSHMRGGGGGGSVRHR BBVGCCBVGGCCTV GGGGSSSDCBBGGGSCTVRHR Direction: Forward Position #: 5 Overlap #: 14 Alignment: GGGGSSSHMRGGGGGGSVRHR ----BBVGCCBVGGCCTV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif GGGGSSSDCBBGGGSCTVRHR BBVGCCBVGGCCTV GGGGSSVDCCBVGGCCTVRHR Direction: Forward Position #: 5 Overlap #: 14 Alignment: GGGGSSSDCBBGGGSCTVRHR ----BBVGCCBVGGCCTV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 32 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ArntAhr ArntAhr Original Motif Original Motif YGCGTG YGCGTG YGCGTG Direction: Backward Position #: 1 Overlap #: 6 Alignment: YGCGTG YGCGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Original Motif YGCGTG HGCGTGGGCGK YGCGTGGGCGK Direction: Forward Position #: 1 Overlap #: 6 Alignment: YGCGTG----- HGCGTGGGCGK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Original Motif YGCGTGGGCGK HGCGTGGGCGK HGCGTGGGCGK Direction: Forward Position #: 1 Overlap #: 11 Alignment: YGCGTGGGCGK HGCGTGGGCGK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HIF1AARNT Original Motif Original Motif HGCGTGGGCGK VBACGTGV VBRCGTGGGCGK Direction: Forward Position #: 2 Overlap #: 7 Alignment: -HGCGTGGGCGK VBACGTGV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HIF1AARNT Original Motif Original Motif VBRCGTGGGCGK VBACGTGV VBRCGTGVGCGK Direction: Forward Position #: 1 Overlap #: 8 Alignment: VBRCGTGGGCGK VBACGTGV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement VBRCGTGVGCGK GCCACGTGSD GSCACGTGSGCGK Direction: Forward Position #: 2 Overlap #: 9 Alignment: -VBRCGTGVGCGK GCCACGTGSD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement GSCACGTGSGCGK GCCACGTGSD GCCACGTGSRCGK Direction: Forward Position #: 1 Overlap #: 10 Alignment: GSCACGTGSGCGK GCCACGTGSD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Original Motif GCCACGTGSRCGK HVGCCCCGCCCCBB HVGCCMCGYSCVBGK Direction: Forward Position #: 3 Overlap #: 12 Alignment: --GCCACGTGSRCGK HVGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Original Motif Reverse Complement HVGCCMCGYSCVBGK DCCACGTGCV HVGCCMCGTGCVBGK Direction: Forward Position #: 3 Overlap #: 10 Alignment: HVGCCMCGYSCVBGK --DCCACGTGCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Original Motif Reverse Complement HVGCCMCGTGCVBGK DCCACGTGCV HVGCCACGTGCVBGK Direction: Forward Position #: 3 Overlap #: 10 Alignment: HVGCCMCGTGCVBGK --DCCACGTGCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 33 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Mycn Original Motif Original Motif HSCACGTGGC HSCACGTGGC HSCACGTGGC Direction: Forward Position #: 1 Overlap #: 10 Alignment: HSCACGTGGC HSCACGTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Reverse Complement Reverse Complement GCCACGTGSD DCCACGTGCV GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSD DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement GCCACGTGSV DCCACGTGCV GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSV DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Original Motif GCCACGTGSV SGGTCACGTGACCS SGGYCACGTGMSCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GCCACGTGSV-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA Combined Motif Reverse Complement Original Motif SGSYCACGTGMCCS CCGGAAGTGVV SSCGSAMGTGVCCS Direction: Forward Position #: 2 Overlap #: 11 Alignment: SGSYCACGTGMCCS -CCGGAAGTGVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA Combined Motif Original Motif Original Motif SSCGSAMGTGVCCS CCGGAAGTGVV SCCGGAAGTGVVCS Direction: Forward Position #: 2 Overlap #: 11 Alignment: SSCGSAMGTGVCCS -CCGGAAGTGVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Original Motif Original Motif SCCGGAAGTGVVCS DGGGYGKGGC SCHGGRHGTGGCCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: SCCGGAAGTGVVCS --DGGGYGKGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Original Motif Original Motif SCHGGRHGTGGCCS DGGGYGKGGC SCDGGGYGKGGCCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: SCHGGRHGTGGCCS --DGGGYGKGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Reverse Complement SCDGGGYGKGGCCS VAGGCCBBGGCVBB VMGGSSHGKGSCSS Direction: Forward Position #: 1 Overlap #: 14 Alignment: SCDGGGYGKGGCCS VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif VMGGSSHGKGSCSS BBVGCCBVGGCCTV VMBGSSBSKVGGCCTV Direction: Forward Position #: 3 Overlap #: 12 Alignment: VMGGSSHGKGSCSS-- --BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 34 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Myc Original Motif Original Motif VGCACGTGGH VGCACGTGGH VGCACGTGGH Direction: Backward Position #: 1 Overlap #: 10 Alignment: VGCACGTGGH VGCACGTGGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Reverse Complement Reverse Complement DCCACGTGCV GCCACGTGSD GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCACGTGCV GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement GCCACGTGSV GCCACGTGSD GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSV GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Original Motif GCCACGTGSV SGGTCACGTGACCS SGGYCACGTGVVCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GCCACGTGSV-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA Combined Motif Reverse Complement Original Motif SGVBCACGTGMCCS CCGGAAGTGVV SSCGSAMGTGVCCS Direction: Forward Position #: 2 Overlap #: 11 Alignment: SGVBCACGTGMCCS -CCGGAAGTGVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA Combined Motif Original Motif Original Motif SSCGSAMGTGVCCS CCGGAAGTGVV SCCGGAAGTGVVCS Direction: Forward Position #: 2 Overlap #: 11 Alignment: SSCGSAMGTGVCCS -CCGGAAGTGVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Original Motif Original Motif SCCGGAAGTGVVCS DGGGYGKGGC SCHGGRHGTGGCCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: SCCGGAAGTGVVCS --DGGGYGKGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Original Motif Original Motif SCHGGRHGTGGCCS DGGGYGKGGC SCDGGGYGKGGCCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: SCHGGRHGTGGCCS --DGGGYGKGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement SCDGGGYGKGGCCS VAGGCCBBGGCVBB SCVRGGCSKGGSCSBB Direction: Forward Position #: 3 Overlap #: 12 Alignment: SCDGGGYGKGGCCS-- --VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement SCVRGGCSKGGSCSBB VAGGCCBBGGCVBB SCVVRGSCCBGGSCVBB Direction: Forward Position #: 4 Overlap #: 13 Alignment: SCVRGGCSKGGSCSBB- ---VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 35 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA GABPA Original Motif Original Motif CCGGAAGTGVV CCGGAAGTGVV CCGGAAGTGVV Direction: Backward Position #: 1 Overlap #: 11 Alignment: CCGGAAGTGVV CCGGAAGTGVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Original Motif VVCACTTCCGG DGVBCABTGDWGCGKRRCSR DGVBCACTKCHGSGKRRCSR Direction: Forward Position #: 3 Overlap #: 11 Alignment: --VVCACTTCCGG------- DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif DGVBCACTKCHGSGKRRCSR DGVBCABTGDWGCGKRRCSR DGVBCACTKVHGCGKRRCSR Direction: Forward Position #: 1 Overlap #: 20 Alignment: DGVBCACTKCHGSGKRRCSR DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement MSGKKRCGCHBYAGTGBBCD VAGGCCBBGGCVBB MSGKBASGCCBBRGYVBBCD Direction: Forward Position #: 5 Overlap #: 14 Alignment: MSGKKRCGCHBYAGTGBBCD ----VAGGCCBBGGCVBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement MSGKBASGCCBBRGYVBBCD VAGGCCBBGGCVBB MSGKBAGGCCBBGGCVBBCD Direction: Forward Position #: 5 Overlap #: 14 Alignment: MSGKBASGCCBBRGYVBBCD ----VAGGCCBBGGCVBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Reverse Complement MSGKBAGGCCBBGGCVBBCD GBTGCAGGTGB VSKGCAGGYSBBGGCVBBCD Direction: Forward Position #: 1 Overlap #: 11 Alignment: MSGKBAGGCCBBGGCVBBCD GBTGCAGGTGB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Original Motif Original Motif VSKGCAGGYSBBGGCVBBCD DBGTAAATAHD VBDGYARRTAHHGGCVBBCD Direction: Forward Position #: 2 Overlap #: 11 Alignment: VSKGCAGGYSBBGGCVBBCD -DBGTAAATAHD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Original Motif Reverse Complement VBDGYARRTAHHGGCVBBCD HCAGAATGTHD HYAGWATGTHDHGGCVBBCD Direction: Forward Position #: 1 Overlap #: 11 Alignment: VBDGYARRTAHHGGCVBBCD HCAGAATGTHD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Reverse Complement HGBBVGCCDDHACATWCTKD WWTAKTTCDKAATT HGBBVGCCDWWWMDTTCTKAATT Direction: Forward Position #: 10 Overlap #: 11 Alignment: HGBBVGCCDDHACATWCTKD--- ---------WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Original Motif AATTYAGAADRWWWHGGCVBBCD BCCGCCCCGCCCCBB GCCCCBBAVVDCHCSAATTYAGAADRWWWH Direction: Backward Position #: 8 Overlap #: 8 Alignment: AATTYAGAADRWWWHGGCVBBCD------- ---------------BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 36 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc cccGCCCCGCCCCsb Reverse Complement Reverse Complement BBGGGGCGGGGCVD BBGGGGCGGGGCGGB BBGGGGCGGGGCGGB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBGGGGCGGGGCVD- BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Original Motif Reverse Complement BBGGGGCGGGGCGGB MSGGGGCGGGGYSG VSGGGGCGGGGCGGB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBGGGGCGGGGCGGB MSGGGGCGGGGYSG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement VSGGGGCGGGGCGGB MSGKKRCGCWDCABTGBBCD MSGGGGCGSKGCVBBGBBCD Direction: Forward Position #: 1 Overlap #: 15 Alignment: VSGGGGCGGGGCGGB----- MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif MSGGGGCGSKGCVBBGBBCD DGVBCABTGDWGCGKRRCSR MSGGGGCGSDBYGDDGCDHDRCSR Direction: Forward Position #: 5 Overlap #: 16 Alignment: MSGGGGCGSKGCVBBGBBCD---- ----DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement MSGKDDHGCDHCKBDSCGCCCCSR VAGGCCBBGGCVBB MSGKBAGGCCBBGSBSBVCCCCSR Direction: Forward Position #: 5 Overlap #: 14 Alignment: MSGKDDHGCDHCKBDSCGCCCCSR ----VAGGCCBBGGCVBB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement MSGKBAGGCCBBGSBSBVCCCCSR VAGGCCBBGGCVBB MSGKBVRGSCCBBGBSVVCCCCSR Direction: Forward Position #: 6 Overlap #: 14 Alignment: MSGKBAGGCCBBGSBSBVCCCCSR -----VAGGCCBBGGCVBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Original Motif Original Motif MSGKBVRGSCCBBGBSVVCCCCSR SGGTCACGTGACCS MSGKBVRKCMCGTGVCCVCCCCSR Direction: Forward Position #: 5 Overlap #: 14 Alignment: MSGKBVRGSCCBBGBSVVCCCCSR ----SGGTCACGTGACCS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Reverse Complement MSGKBVRKCMCGTGVCCVCCCCSR CCCCCTTGGGCCCC CCCCSKDGGGCCCCTGVCCVCCCCSR Direction: Forward Position #: 3 Overlap #: 12 Alignment: --MSGKBVRKCMCGTGVCCVCCCCSR CCCCCTTGGGCCCC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Reverse Complement CCCCSKDGGGCCCCTGVCCVCCCCSR CCCCCTTGGGCCCC CCCCCTWGGGCCCCTGVCCVCCCCSR Direction: Forward Position #: 1 Overlap #: 14 Alignment: CCCCSKDGGGCCCCTGVCCVCCCCSR CCCCCTTGGGCCCC------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Reverse Complement Original Motif MSGGGGVGGBCAGGGGCCCWAGGGGG HGCGTGGGCGK HVCGKGGGSGKCAGGGGCCCWAGGGGG Direction: Forward Position #: 2 Overlap #: 10 Alignment: -MSGGGGVGGBCAGGGGCCCWAGGGGG HGCGTGGGCGK---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 37 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw wwAAATAATAtw Original Motif Original Motif HDAAATAATAHW HDAAATAATADD HDAAATAATAHW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATAHW HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif HDAAATAATAHW AWAAAWTWAAASWA HDAWAWAATAAAASWA Direction: Forward Position #: 3 Overlap #: 10 Alignment: HDAAATAATAHW---- --AWAAAWTWAAASWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif HDAWAWAATAAAASWA AATHATATWTHAAA HDAAATAATAWWWVAAA Direction: Forward Position #: 4 Overlap #: 13 Alignment: HDAWAWAATAAAASWA- ---AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Original Motif HDAAATAATAWWWVAAA AWTAAATAYAATTT AWTAAATAHWATTTVAAA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -HDAAATAATAWWWVAAA AWTAAATAYAATTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Reverse Complement Reverse Complement TTTVAAATWHTATTTAWT TCAAAATKAWTTGT TTYAAAATTATWTKTAWT Direction: Forward Position #: 2 Overlap #: 14 Alignment: TTTVAAATWHTATTTAWT -TCAAAATKAWTTGT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Reverse Complement Reverse Complement AWTAYAWATAATTTTKAA WWTAKTTCDKAATT AWTAYWTMTDAWTTTKAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AWTAYAWATAATTTTKAA WWTAKTTCDKAATT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Reverse Complement TTYAAAWTHARAWMTAWT TWTAATCTAWGAA TTTAAWYTAWGAAMTAWT Direction: Forward Position #: 1 Overlap #: 13 Alignment: TTYAAAWTHARAWMTAWT TWTAATCTAWGAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Reverse Complement Reverse Complement AWTAYTTCWTAKWTTAAA DHTATTTACBD WWTATTTMHHAKWTTAAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AWTAYTTCWTAKWTTAAA DHTATTTACBD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 18 Reverse Complement Reverse Complement TTTAAWYTHDYAAATAWW TTATWAWCTAA TTWTAAWCTAAYAAATAWW Direction: Forward Position #: 2 Overlap #: 10 Alignment: -TTTAAWYTHDYAAATAWW TTATWAWCTAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw Combined Motif Original Motif Reverse Complement TTWTAAWCTAAYAAATAWW DBTACWGTAVH TTHTAMWSTAVHAAATAWW Direction: Forward Position #: 2 Overlap #: 11 Alignment: TTWTAAWCTAAYAAATAWW -DBTACWGTAVH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 38 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Pax5 Reverse Complement Reverse Complement BBGGGGCGGGGCGGB MSGKKRCGCWDCABTGBBCD HSGGGGCGSKGCRBBGBBCD Direction: Forward Position #: 1 Overlap #: 15 Alignment: BBGGGGCGGGGCGGB----- MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif HSGGGGCGSKGCRBBGBBCD DGVBCABTGDWGCGKRRCSR HSGGGGCGSDBYGDDGCDHDRCSR Direction: Forward Position #: 5 Overlap #: 16 Alignment: HSGGGGCGSKGCRBBGBBCD---- ----DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Reverse Complement HSGGGGCGSDBYGDDGCDHDRCSR BBGGGGCGGGGCVD VBGGGGCGGGGCVDDGCDHDRCSR Direction: Forward Position #: 1 Overlap #: 14 Alignment: HSGGGGCGSDBYGDDGCDHDRCSR BBGGGGCGGGGCVD---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Original Motif Reverse Complement VBGGGGCGGGGCVDDGCDHDRCSR MSGGGGCGGGGYSG VSGGGGCGGGGCSDDGCDHDRCSR Direction: Forward Position #: 1 Overlap #: 14 Alignment: VBGGGGCGGGGCVDDGCDHDRCSR MSGGGGCGGGGYSG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Original Motif VSGGGGCGGGGCSDDGCDHDRCSR BBVGCCBVGGCCTV VBGGSSCGGGSCTVDGCDHDRCSR Direction: Forward Position #: 1 Overlap #: 14 Alignment: VSGGGGCGGGGCSDDGCDHDRCSR BBVGCCBVGGCCTV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif VBGGSSCGGGSCTVDGCDHDRCSR BBVGCCBVGGCCTV VBGGSCBVGGCCTVDGCDHDRCSR Direction: Forward Position #: 1 Overlap #: 14 Alignment: VBGGSSCGGGSCTVDGCDHDRCSR BBVGCCBVGGCCTV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Reverse Complement Reverse Complement MSGKDDHGCDVAGGCCVBGSCCBV SGGTCACGTGACCS MSGKBGSKCACRKGMCCBGSCCBV Direction: Forward Position #: 5 Overlap #: 14 Alignment: MSGKDDHGCDVAGGCCVBGSCCBV ----SGGTCACGTGACCS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Reverse Complement MSGKBGSKCACRKGMCCBGSCCBV CCCCCTTGGGCCCC MSGKCCCCCHHRKGCCCCGSCCBV Direction: Forward Position #: 5 Overlap #: 14 Alignment: MSGKBGSKCACRKGMCCBGSCCBV ----CCCCCTTGGGCCCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Reverse Complement VBGGSCGGGGCYMHHGGGGGYCSR CCCCCTTGGGCCCC CCCSCYDGGGCCCCHGGGGGYCSR Direction: Forward Position #: 1 Overlap #: 14 Alignment: VBGGSCGGGGCYMHHGGGGGYCSR CCCCCTTGGGCCCC---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 Combined Motif Original Motif Reverse Complement CCCSCYDGGGCCCCHGGGGGYCSR YCGCCCACGCH CYCSCCHRSGCCCCHGGGGGYCSR Direction: Forward Position #: 2 Overlap #: 11 Alignment: CCCSCYDGGGCCCCHGGGGGYCSR -YCGCCCACGCH------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 39 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr tkAAATAATAtw Reverse Complement Reverse Complement MBATTGGCTGH WHTATTATTTDH WVTATTRKYTVH Direction: Forward Position #: 2 Overlap #: 11 Alignment: -MBATTGGCTGH WHTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Reverse Complement HVAKYMAATABW HCAGAATGTHD HCAGAAWRTMDW Direction: Forward Position #: 1 Overlap #: 11 Alignment: HVAKYMAATABW HCAGAATGTHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Original Motif HCAGAAWRTMDW HDAAATAATADD HHARAWAATADW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HCAGAAWRTMDW HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Reverse Complement Reverse Complement WDTATTWTMTDH GBTGCAGGTGB WDTATTWDHTGCAGGTGB Direction: Forward Position #: 8 Overlap #: 5 Alignment: WDTATTWTMTDH------ -------GBTGCAGGTGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Combined Motif Original Motif Reverse Complement WDTATTWDHTGCAGGTGB TTATWAWCTAA WTTATWAWCTRMAGGTGB Direction: Forward Position #: 2 Overlap #: 11 Alignment: WDTATTWDHTGCAGGTGB -TTATWAWCTAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif GABPA Reverse Complement Reverse Complement BCACCTYKAGWTWATAAW VVCACTTCCGG BVMMCTTYMGDTWATAAW Direction: Forward Position #: 1 Overlap #: 11 Alignment: BCACCTYKAGWTWATAAW VVCACTTCCGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif GABPA Original Motif Reverse Complement BVMMCTTYMGDTWATAAW VVCACTTCCGG VVMMCTTCCGGTWATAAW Direction: Forward Position #: 1 Overlap #: 11 Alignment: BVMMCTTYMGDTWATAAW VVCACTTCCGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Reverse Complement Reverse Complement WTTATWACCGGAAGYRVV DHTATTTACBD DHTATTWMCGDAAGYRVV Direction: Forward Position #: 1 Overlap #: 11 Alignment: WTTATWACCGGAAGYRVV DHTATTTACBD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif DHTATTWMCGDAAGYRVV BBVGCCBVGGCCTV DHTATTWMCVBARSYDVGGCCTV Direction: Forward Position #: 10 Overlap #: 9 Alignment: DHTATTWMCGDAAGYRVV----- ---------BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Reverse Complement VAGGCCVHKSKTBVGYWAATAHD VAGGCCBBGGCVBB VAGGCCBBGSBBBBGYWAATAHD Direction: Forward Position #: 1 Overlap #: 14 Alignment: VAGGCCVHKSKTBVGYWAATAHD VAGGCCBBGGCVBB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 40 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc wsTACwGTAsw Original Motif Reverse Complement BCACCTGCABC DBTACWGTAVH DBWMCTGYAVH Direction: Backward Position #: 1 Overlap #: 11 Alignment: BCACCTGCABC DBTACWGTAVH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Original Motif DVTKCAGYWBD DHACATTCTGH DHACATTCTKCAGYWBD Direction: Forward Position #: 7 Overlap #: 5 Alignment: ------DVTKCAGYWBD DHACATTCTGH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 41 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw tkAAATAATAtw Original Motif Original Motif HDAAATAATADD HDAAATAATAHW HDAAATAATAHW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATADD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 3 Combined Motif Original Motif Original Motif HDAAATAATAHW AWAAAWTWAAASWA HDAWAWAATAAAASWA Direction: Forward Position #: 3 Overlap #: 10 Alignment: HDAAATAATAHW---- --AWAAAWTWAAASWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 9 Combined Motif Original Motif Original Motif HDAWAWAATAAAASWA AATHATATWTHAAA HDAAATAATAWWWVAAA Direction: Forward Position #: 4 Overlap #: 13 Alignment: HDAWAWAATAAAASWA- ---AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Original Motif Original Motif HDAAATAATAWWWVAAA AWTAAATAYAATTT AWTAAATAHWATTTVAAA Direction: Forward Position #: 2 Overlap #: 13 Alignment: -HDAAATAATAWWWVAAA AWTAAATAYAATTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 16 Combined Motif Reverse Complement Reverse Complement TTTVAAATWHTATTTAWT TCAAAATKAWTTGT TTYAAAATTATWTKTAWT Direction: Forward Position #: 2 Overlap #: 14 Alignment: TTTVAAATWHTATTTAWT -TCAAAATKAWTTGT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Reverse Complement Reverse Complement AWTAYAWATAATTTTKAA WWTAKTTCDKAATT AWTAYWTMTDAWTTTKAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AWTAYAWATAATTTTKAA WWTAKTTCDKAATT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 8 Original Motif Reverse Complement AWTAYWTMTDAWTTTKAA TGATTTTAWKATTT WKWWTTTAWKATTTTKAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AWTAYWTMTDAWTTTKAA TGATTTTAWKATTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 19 Reverse Complement Reverse Complement TTYAAAATYWTAAAWWYW TWTAATCTAWGAA TTTAAWMTAWKAAAWWYW Direction: Forward Position #: 1 Overlap #: 13 Alignment: TTYAAAATYWTAAAWWYW TWTAATCTAWGAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Reverse Complement Reverse Complement WKWWTTTYWTARWTTAAA DHTATTTACBD WDTATTTAHHARWTTAAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: WKWWTTTYWTARWTTAAA DHTATTTACBD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 18 Reverse Complement Reverse Complement TTTAAWMTHDTAAATAHW TTATWAWCTAA TTWTAAWCTAATAAATAHW Direction: Forward Position #: 2 Overlap #: 10 Alignment: -TTTAAWMTHDTAAATAHW TTATWAWCTAA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 42 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Pax5 Original Motif Original Motif SGGTCACGTGACCS DGVBCABTGDWGCGKRRCSR DGVBCABBGWHRCGTGACSV Direction: Forward Position #: 7 Overlap #: 14 Alignment: ------SGGTCACGTGACCS DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement DGVBCABBGWHRCGTGACSV MSGKKRCGCWDCABTGBBCD DGVBMVGKGDCRCGTSACBGBBCD Direction: Forward Position #: 5 Overlap #: 16 Alignment: DGVBCABBGWHRCGTGACSV---- ----MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Reverse Complement DGVBMVGKGDCRCGTSACBGBBCD BBGGGGCGGGGCVD BBGGGGCGGGGHVGCGTSACBGBBCD Direction: Forward Position #: 3 Overlap #: 12 Alignment: --DGVBMVGKGDCRCGTSACBGBBCD BBGGGGCGGGGCVD------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Reverse Complement HGVBCBGTSACGCVDCCCCGCCCCBB BBGGGGCGGGGCGGB HGVBBBGKGRCGGGGCSSVGCCCCBB Direction: Forward Position #: 5 Overlap #: 15 Alignment: HGVBCBGTSACGCVDCCCCGCCCCBB ----BBGGGGCGGGGCGGB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Reverse Complement Reverse Complement BBGGGGCVSSGCCCCGMCYCBBBBCD MSGGGGCGGGGYSG VSGGGGCGGGGCSBCGMCYCBBBBCD Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBGGGGCVSSGCCCCGMCYCBBBBCD MSGGGGCGGGGYSG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Original Motif Reverse Complement VSGGGGCGGGGCSBCGMCYCBBBBCD GBTGCAGGTGB VSGGKGCRGGKBBBCGMCYCBBBBCD Direction: Forward Position #: 3 Overlap #: 11 Alignment: VSGGGGCGGGGCSBCGMCYCBBBBCD --GBTGCAGGTGB------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Reverse Complement Original Motif HGVBBBGKGRCGBBBRCCKGCRCCSB HGCGTGGGCGK HGCGBGGGSGBGBBBRCCKGCRCCSB Direction: Forward Position #: 1 Overlap #: 11 Alignment: HGVBBBGKGRCGBBBRCCKGCRCCSB HGCGTGGGCGK--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Original Motif HGCGBGGGSGBGBBBRCCKGCRCCSB HGCGTGGGCGK HGCGTGGGCGBGBBBRCCKGCRCCSB Direction: Forward Position #: 1 Overlap #: 11 Alignment: HGCGBGGGSGBGBBBRCCKGCRCCSB HGCGTGGGCGK--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Reverse Complement VSGGKGCRGGKBBBCVCGCCCACGCH CCCCCTTGGGCCCC CCCCCCCBYSSRCSVSGGKGCRGGKBBB Direction: Backward Position #: 3 Overlap #: 12 Alignment: VSGGKGCRGGKBBBCVCGCCCACGCH-- --------------CCCCCTTGGGCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 43 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw kcACCTGCAgc Original Motif Reverse Complement HVTACWGTABD GBTGCAGGTGB DVTRCAGKWBH Direction: Forward Position #: 1 Overlap #: 11 Alignment: HVTACWGTABD GBTGCAGGTGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Reverse Complement DVTRCAGKWBH DDTATTATTTDH DVTAYWRTWDDH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DVTRCAGKWBH- DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tkAAATAATAtw Original Motif Reverse Complement DVTAYWRTWDDH WHTATTATTTDH DHTATTATTTDH Direction: Forward Position #: 1 Overlap #: 12 Alignment: DVTAYWRTWDDH WHTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Reverse Complement DHTATTATTTDH WWTAKTTCDKAATT WWTATTWYTKAATT Direction: Forward Position #: 1 Overlap #: 12 Alignment: DHTATTATTTDH-- WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Original Motif Reverse Complement WWTATTWYTKAATT DHTATTTACBD DHTATTTAHDAATT Direction: Forward Position #: 1 Overlap #: 11 Alignment: WWTATTWYTKAATT DHTATTTACBD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Reverse Complement Original Motif AATTDHTAAATAHD AATHATATWTHAAA AATHAWAWWWTAAA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AATTDHTAAATAHD AATHATATWTHAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement AATHAWAWWWTAAA MSGKKRCGCWDCABTGBBCD MARKKAHDCWWBAVWGBBCD Direction: Forward Position #: 2 Overlap #: 14 Alignment: -AATHAWAWWWTAAA----- MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif MARKKAHDCWWBAVWGBBCD DGVBCABTGDWGCGKRRCSR MARKDRHDCWBYRDWGCDHDRCSR Direction: Forward Position #: 5 Overlap #: 16 Alignment: MARKKAHDCWWBAVWGBBCD---- ----DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 44 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh kcACCTGCAgc Original Motif Original Motif DHACATTCTGH BCACCTGCABC DHACMTKCWGH Direction: Backward Position #: 1 Overlap #: 11 Alignment: DHACATTCTGH BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 16 Reverse Complement Reverse Complement DCWGYAYGTDH TCAAAATKAWTTGT TCAAAATKADTTGTAYGTDH Direction: Forward Position #: 10 Overlap #: 5 Alignment: ---------DCWGYAYGTDH TCAAAATKAWTTGT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Reverse Complement Original Motif DHACKTACAADTYATTTTGA HDAAATAATADD DHAMDTAMWADTYATTTTGA Direction: Forward Position #: 1 Overlap #: 12 Alignment: DHACKTACAADTYATTTTGA HDAAATAATADD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tkAAATAATAtw Original Motif Original Motif DHAMDTAMWADTYATTTTGA HDAAATAATAHW DHAAATAATADWYATTTTGA Direction: Forward Position #: 1 Overlap #: 12 Alignment: DHAMDTAMWADTYATTTTGA HDAAATAATAHW-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 6 Original Motif Original Motif DHAAATAATADWYATTTTGA AATTYDGAARTAWW AATTHARWAATAWWYATTTTGA Direction: Forward Position #: 3 Overlap #: 12 Alignment: --DHAAATAATADWYATTTTGA AATTYDGAARTAWW-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kCAGCCAATmr Original Motif Reverse Complement AATTHARWAATAWWYATTTTGA MBATTGGCTGH CTGHAHATWKKAATTHARWAATAWWY Direction: Backward Position #: 5 Overlap #: 7 Alignment: AATTHARWAATAWWYATTTTGA---- ---------------MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 45 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww tkAAATAATAtw Original Motif Original Motif DBGTAAATAHD HDAAATAATAHW DHRWWAATAHDH Direction: Backward Position #: 1 Overlap #: 11 Alignment: -DBGTAAATAHD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Original Motif DHRWWAATAHDH HDAAATAATADD DHDWAAATAWTADD Direction: Forward Position #: 3 Overlap #: 10 Alignment: DHRWWAATAHDH-- --HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 9 Original Motif Reverse Complement DHDWAAATAWTADD TTTDAWATATHATT THTDAAATAWWATT Direction: Forward Position #: 1 Overlap #: 14 Alignment: DHDWAAATAWTADD TTTDAWATATHATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 6 Combined Motif Reverse Complement Reverse Complement AATWWTATTTDAHA WWTAKTTCDKAATT AAWWTWDTTYDDAATT Direction: Forward Position #: 3 Overlap #: 12 Alignment: AATWWTATTTDAHA-- --WWTAKTTCDKAATT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 4 Combined Motif Reverse Complement Reverse Complement AATTDDMAADWAWWTT AWGKAAWTTTT AATWDDHAAWTWTTTT Direction: Forward Position #: 4 Overlap #: 11 Alignment: AATTDDMAADWAWWTT ---AWGKAAWTTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 3 Reverse Complement Original Motif AAAAWAWTTHHDWATT AWAAAWTWAAASWA AWAAAWWWWAMVWATT Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAAAWAWTTHHDWATT AWAAAWTWAAASWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw Combined Motif Original Motif Reverse Complement AWAAAWWWWAMVWATT DBTACWGTAVH AHHWACWKTAVDWATT Direction: Forward Position #: 2 Overlap #: 11 Alignment: AWAAAWWWWAMVWATT -DBTACWGTAVH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Original Motif AATWDBTAYWGTWHHT AWTAAATAYAATTT AATAAATAYAATTTHT Direction: Forward Position #: 1 Overlap #: 14 Alignment: AATWDBTAYWGTWHHT AWTAAATAYAATTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Reverse Complement AHAAATTKTATTTATT MSGKKRCGCWDCABTGBBCD MSGKKRCGCWDMAATKBTMDTTATT Direction: Forward Position #: 10 Overlap #: 11 Alignment: ---------AHAAATTKTATTTATT MSGKKRCGCWDCABTGBBCD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement MSGKKRCGCWDMAATKBTMDTTATT MSGKKRCGCWDCABTGBBCD MSGKKRCGCWDCAVTKBBMDTTATT Direction: Forward Position #: 1 Overlap #: 20 Alignment: MSGKKRCGCWDMAATKBTMDTTATT MSGKKRCGCWDCABTGBBCD----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 46 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Zfx Original Motif Original Motif BBVGCCBVGGCCTV BBVGCCBVGGCCTV BBVGCCBVGGCCTV Direction: Backward Position #: 1 Overlap #: 14 Alignment: BBVGCCBVGGCCTV BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Original Motif BBVGCCBVGGCCTV BCCGCCCCGCCCCBB BBSGCCCCGSCCYBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBVGCCBVGGCCTV- BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif BBMGGSCGGGGCSBB DGVBCABTGDWGCGKRRCSR BBVGGSCRBKGVDGVGKRRCSR Direction: Forward Position #: 3 Overlap #: 13 Alignment: BBMGGSCGGGGCSBB------- --DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif MSGKKRCVCHVCYBKGSCCBBB DGVBCABTGDWGCGKRRCSR MSGKDRMBCHVYBVDGCVBDVCSR Direction: Forward Position #: 5 Overlap #: 18 Alignment: MSGKKRCVCHVCYBKGSCCBBB-- ----DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Reverse Complement Original Motif MSGVDBVGCDBBKVHGBRMHYCSR HVGCCCCGCCCCBB MSGCCCCGCCCCBVHGBRMHYCSR Direction: Forward Position #: 1 Overlap #: 14 Alignment: MSGVDBVGCDBBKVHGBRMHYCSR HVGCCCCGCCCCBB---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Original Motif MSGKDRMBCHVBGGGGCGGGGCSR GGGGCCCAAGGGGG MSGKGGGGCCVHVGGGSGGGGCSR Direction: Forward Position #: 5 Overlap #: 14 Alignment: MSGKDRMBCHVBGGGGCGGGGCSR ----GGGGCCCAAGGGGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Reverse Complement MSGCCCCSCCCVHVGGCCCCYCSR CCCCCTTGGGCCCC MSGCCCCCCCYHDGGSCCCCYCSR Direction: Forward Position #: 6 Overlap #: 14 Alignment: MSGCCCCSCCCVHVGGCCCCYCSR -----CCCCCTTGGGCCCC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif MSGCCCCCCCYHDGGSCCCCYCSR CSKCCCCGCCCCSY MSGCCCCSCCCCGSSCCCCCYCSR Direction: Forward Position #: 6 Overlap #: 14 Alignment: MSGCCCCCCCYHDGGSCCCCYCSR -----CSKCCCCGCCCCSY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif GABPA Reverse Complement Original Motif MSGKGGGGGSSCGGGGSGGGGCSR CCGGAAGTGVV CCGGRRGKGSVCGGGGSGGGGCSR Direction: Forward Position #: 1 Overlap #: 11 Alignment: MSGKGGGGGSSCGGGGSGGGGCSR CCGGAAGTGVV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif GABPA Original Motif Original Motif CCGGRRGKGSVCGGGGSGGGGCSR CCGGAAGTGVV CCGGAAGTGVVCGGGGSGGGGCSR Direction: Forward Position #: 1 Overlap #: 11 Alignment: CCGGRRGKGSVCGGGGSGGGGCSR CCGGAAGTGVV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 47 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Egr1 Egr1 Original Motif Original Motif HGCGTGGGCGK HGCGTGGGCGK HGCGTGGGCGK Direction: Backward Position #: 1 Overlap #: 11 Alignment: HGCGTGGGCGK HGCGTGGGCGK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Original Motif YCGCCCACGCH BCCGCCCCGCCCCBB YCBSCCMCGCCCCBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: YCGCCCACGCH---- BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Original Motif YCBSCCMCGCCCCBB BBVGCCBVGGCCTV BCVSCCVCGSCCYBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: YCBSCCMCGCCCCBB BBVGCCBVGGCCTV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement BBMGGSCGVGGSVGB VAGGCCBBGGCVBB BBMRGGCSBGGSCSBB Direction: Forward Position #: 3 Overlap #: 13 Alignment: BBMGGSCGVGGSVGB- --VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif BBMRGGCSBGGSCSBB DGVBCABTGDWGCGKRRCSR BBMRGVCCHBKSVDGCGKRRCSR Direction: Forward Position #: 4 Overlap #: 13 Alignment: BBMRGGCSBGGSCSBB------- ---DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement BBMRGVCCHBKSVDGCGKRRCSR MSGKKRCGCWDCABTGBBCD MSGKKVCRSDBCVBBGHDSBGKRRCSR Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----BBMRGVCCHBKSVDGCGKRRCSR MSGKKRCGCWDCABTGBBCD------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Original Motif Reverse Complement MSGKKVCRSDBCVBBGHDSBGKRRCSR MSGGGGCGGGGYSG MSGGGGCGGGGCVBBGHDSBGKRRCSR Direction: Forward Position #: 1 Overlap #: 14 Alignment: MSGKKVCRSDBCVBBGHDSBGKRRCSR MSGGGGCGGGGYSG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Reverse Complement MSGGGGCGGGGCVBBGHDSBGKRRCSR BBGGGGCGGGGCVD VSGGGGCGGGGCVBBGHDSBGKRRCSR Direction: Forward Position #: 1 Overlap #: 14 Alignment: MSGGGGCGGGGCVBBGHDSBGKRRCSR BBGGGGCGGGGCVD------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Original Motif Reverse Complement VSGGGGCGGGGCVBBGHDSBGKRRCSR GGGGGYGGGG VSGGGGSGGGBSGGGGHDSBGKRRCSR Direction: Forward Position #: 6 Overlap #: 10 Alignment: VSGGGGCGGGGCVBBGHDSBGKRRCSR -----GGGGGYGGGG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Original Motif Reverse Complement VSGGGGSGGGBSGGGGHDSBGKRRCSR GGGGGYGGGG VGGGGBGGGGBSGGGGHDSBGKRRCSR Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSGGGGSGGGBSGGGGHDSBGKRRCSR GGGGGYGGGG----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 48 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 SP1 Original Motif Original Motif CCCCKCCCCC CCCCKCCCCC CCCCKCCCCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: CCCCKCCCCC CCCCKCCCCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Reverse Complement GGGGGYGGGG MSGGGGCGGGGYSG GVGGGGGSGGGGYSG Direction: Forward Position #: 2 Overlap #: 9 Alignment: GGGGGYGGGG----- -MSGGGGCGGGGYSG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Reverse Complement Original Motif CSKCCCCSCCCCCVC HVGCCCCGCCCCBB CSGCCCCGCCCCBVC Direction: Forward Position #: 1 Overlap #: 14 Alignment: CSKCCCCSCCCCCVC HVGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Reverse Complement GVBGGGGCGGGGCSG BBGGGGCGGGGCGGB GBGGGGSSGGGSSGB Direction: Forward Position #: 1 Overlap #: 15 Alignment: GVBGGGGCGGGGCSG BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement GBGGGGSSGGGSSGB VAGGCCBBGGCVBB GBSRGGCCGGGSCVBB Direction: Forward Position #: 3 Overlap #: 13 Alignment: GBGGGGSSGGGSSGB- --VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement GBSRGGCCGGGSCVBB VAGGCCBBGGCVBB GBSVRGSCSBGGSVVBB Direction: Forward Position #: 4 Overlap #: 13 Alignment: GBSRGGCCGGGSCVBB- ---VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Reverse Complement BBVVSCCBSGSCKBSBC CCCCCTTGGGCCCC CCCCCYHBGGCCBCSBC Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBVVSCCBSGSCKBSBC CCCCCTTGGGCCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Original Motif GBSGBGGCCBHKGGGGG GGGGCCCAAGGGGG GBSGGGGCCHAVGGGGG Direction: Forward Position #: 4 Overlap #: 14 Alignment: GBSGBGGCCBHKGGGGG ---GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Klf4 Original Motif Original Motif GBSGGGGCCHAVGGGGG DGGGYGKGGC DGGGBGGSSCAVGGGGG Direction: Forward Position #: 1 Overlap #: 10 Alignment: GBSGGGGCCHAVGGGGG DGGGYGKGGC------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Reverse Complement Reverse Complement CCCCCBTGSSCCVCCCH GCCYCMCCCD CCCSCCYSVCCCDCCCH Direction: Forward Position #: 4 Overlap #: 10 Alignment: CCCCCBTGSSCCVCCCH ---GCCYCMCCCD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 49 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFAP2A TFAP2A Original Motif Original Motif GCCBBVRGS GCCBBVRGS GCCBBVRGS Direction: Forward Position #: 1 Overlap #: 9 Alignment: GCCBBVRGS GCCBBVRGS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif GCCBBVRGS BBVGCCBVGGCCTV GCCBBSVGVGGCCTV Direction: Forward Position #: 2 Overlap #: 8 Alignment: GCCBBVRGS------ -BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif GCCBBSVGVGGCCTV BBVGCCBVGGCCTV GCSBVVSBBGGSCYTV Direction: Forward Position #: 3 Overlap #: 13 Alignment: GCCBBSVGVGGCCTV- --BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Original Motif VAKGSCCBBSVVBSGC GGGGCCCAAGGGGG GRGGSCCHVGGGGGGC Direction: Forward Position #: 1 Overlap #: 14 Alignment: VAKGSCCBBSVVBSGC GGGGCCCAAGGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Original Motif GRGGSCCHVGGGGGGC GGGGCCCAAGGGGG GGGGCCCWVGGGGGGC Direction: Forward Position #: 1 Overlap #: 14 Alignment: GRGGSCCHVGGGGGGC GGGGCCCAAGGGGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Reverse Complement Reverse Complement GCCCCCCBWGGGCCCC GCCACGTGSD GCCMCSYGBRGGCCCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCCCCCBWGGGCCCC GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement GCCMCSYGBRGGCCCC GCCACGTGSD GCCMCGTGBDGGCCCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCMCSYGBRGGCCCC GCCACGTGSD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Reverse Complement GCCMCGTGBDGGCCCC MSGKKRCGCWDCABTGBBCD GCCMCGTKVVGSHYCMBTGBBCD Direction: Forward Position #: 4 Overlap #: 13 Alignment: GCCMCGTGBDGGCCCC------- ---MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Original Motif HGVBCABRGKDSCVBYACGYGGC DGVBCABTGDWGCGKRRCSR DGVBCABBGDDGCGKVRCSDGGC Direction: Forward Position #: 1 Overlap #: 20 Alignment: HGVBCABRGKDSCVBYACGYGGC DGVBCABTGDWGCGKRRCSR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Reverse Complement Reverse Complement GCCDSGKVRCGCDHCBBTGBBCD DCCACGTGCV GCCACGTGVVGCDHCBBTGBBCD Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCDSGKVRCGCDHCBBTGBBCD DCCACGTGCV------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 50 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF MIZF Original Motif Original Motif BAACGTCCGC BAACGTCCGC BAACGTCCGC Direction: Backward Position #: 1 Overlap #: 10 Alignment: BAACGTCCGC BAACGTCCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif GABPA Reverse Complement Original Motif GCGGACGTTV CCGGAAGTGVV SCGGAMGTDVV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCGGACGTTV- CCGGAAGTGVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif GABPA Original Motif Original Motif SCGGAMGTDVV CCGGAAGTGVV SCGGAAGTDVV Direction: Forward Position #: 1 Overlap #: 11 Alignment: SCGGAMGTDVV CCGGAAGTGVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Reverse Complement Original Motif VVHACTTCCGS BCACCTGCABC BVAMCTKCMGS Direction: Forward Position #: 1 Overlap #: 11 Alignment: VVHACTTCCGS BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Original Motif Original Motif BVAMCTKCMGS DHACATTCTGH DHACMTTCTGH Direction: Forward Position #: 1 Overlap #: 11 Alignment: BVAMCTKCMGS DHACATTCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 51 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Klf4 Original Motif Original Motif DGGGYGKGGC DGGGYGKGGC DGGGYGKGGC Direction: Backward Position #: 1 Overlap #: 10 Alignment: DGGGYGKGGC DGGGYGKGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Reverse Complement Original Motif GCCYCMCCCD CSKCCCCGCCCCSY GCCBCCCCSHCCCSY Direction: Forward Position #: 2 Overlap #: 9 Alignment: GCCYCMCCCD----- -CSKCCCCGCCCCSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Reverse Complement Reverse Complement MSGGGDSGGGGVGGC BBGGGGCGGGGCVD VSGGGGCGGGGCGGC Direction: Forward Position #: 1 Overlap #: 14 Alignment: MSGGGDSGGGGVGGC BBGGGGCGGGGCVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Original Motif GCCGCCCCGCCCCSB BCCGCCCCGCCCCBB GCVVCSCCSCSCCCCBB Direction: Forward Position #: 3 Overlap #: 13 Alignment: GCCGCCCCGCCCCSB-- --BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Original Motif BBGGGGSGSGGSGVVGC BBVGCCBVGGCCTV BBGGSSSGGGSCKVVGC Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBGGGGSGSGGSGVVGC BBVGCCBVGGCCTV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif BBGGSSSGGGSCKVVGC BBVGCCBVGGCCTV BBBGGSCBGGGCCTVGC Direction: Forward Position #: 2 Overlap #: 14 Alignment: BBGGSSSGGGSCKVVGC -BBVGCCBVGGCCTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Original Motif Reverse Complement BBBGGSCBGGGCCTVGC GGGGGYGGGG GGGGGBSGGGGCCTVGC Direction: Forward Position #: 1 Overlap #: 10 Alignment: BBBGGSCBGGGCCTVGC GGGGGYGGGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Original Motif Reverse Complement GGGGGBSGGGGCCTVGC GGGGGYGGGG GGGGGYGGGGGCCTVGC Direction: Forward Position #: 1 Overlap #: 10 Alignment: GGGGGBSGGGGCCTVGC GGGGGYGGGG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Reverse Complement Reverse Complement GCVAGGCCCCCKCCCCC DCCACGTGCV GCCACGYSCCCKCCCCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCVAGGCCCCCKCCCCC DCCACGTGCV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement GCCACGYSCCCKCCCCC DCCACGTGCV GCCACGTGCVCKCCCCC Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGYSCCCKCCCCC DCCACGTGCV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 52 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- E2F1 E2F1 Original Motif Original Motif TTTSGCGC TTTSGCGC TTTSGCGC Direction: Forward Position #: 1 Overlap #: 8 Alignment: TTTSGCGC TTTSGCGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Reverse Complement Original Motif GCGCSAAA GGGGCCCAAGGGGG GGSGCCAAAGGGGG Direction: Forward Position #: 2 Overlap #: 8 Alignment: -GCGCSAAA----- GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif PLAG1 Original Motif Original Motif GGSGCCAAAGGGGG GGGGCCCAAGGGGG GGGGCCMAAGGGGG Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGSGCCAAAGGGGG GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Original Motif Reverse Complement GGGGCCMAAGGGGG MBATTGGCTGH MAAGGGGGGGSKSCGGGGCCMA Direction: Backward Position #: 9 Overlap #: 6 Alignment: -----GGGGCCMAAGGGGG --------MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 53 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIF1AARNT HIF1AARNT Original Motif Original Motif VBACGTGV VBACGTGV VBACGTGV Direction: Forward Position #: 1 Overlap #: 8 Alignment: VBACGTGV VBACGTGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement VBACGTGV GCCACGTGSD GSCACGTGSD Direction: Forward Position #: 2 Overlap #: 8 Alignment: -VBACGTGV- GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement GSCACGTGSD GCCACGTGSD GCCACGTGSD Direction: Forward Position #: 1 Overlap #: 10 Alignment: GSCACGTGSD GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement GCCACGTGSD DCCACGTGCV GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSD DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Reverse Complement Original Motif VSCACGTGGC VGCACGTGGH VGCACGTGGC Direction: Forward Position #: 1 Overlap #: 10 Alignment: VSCACGTGGC VGCACGTGGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Reverse Complement Original Motif GCCACGTGCV BCACCTGCABC GBCACSTGCABC Direction: Forward Position #: 2 Overlap #: 9 Alignment: GCCACGTGCV-- -BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Reverse Complement Reverse Complement GBTGCASGTGBC SGGTCACGTGACCS SSKKCACGTGDCCS Direction: Forward Position #: 1 Overlap #: 12 Alignment: GBTGCASGTGBC-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Combined Motif Reverse Complement Reverse Complement SGGDCACGTGRYSS GCGGACGTTV SGSGSACGTKVYSS Direction: Forward Position #: 2 Overlap #: 10 Alignment: SGGDCACGTGRYSS -GCGGACGTTV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MIZF Combined Motif Original Motif Reverse Complement SGSGSACGTKVYSS GCGGACGTTV SGCGGACGTDVYSS Direction: Forward Position #: 2 Overlap #: 10 Alignment: SGSGSACGTKVYSS -GCGGACGTTV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Original Motif Reverse Complement SGCGGACGTDVYSS MSGKKRCGCWDCABTGBBCD VGSGGACGYWDCVVTGBBCD Direction: Forward Position #: 1 Overlap #: 14 Alignment: SGCGGACGTDVYSS------ MSGKKRCGCWDCABTGBBCD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 54 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 PLAG1 Original Motif Original Motif GGGGCCCAAGGGGG GGGGCCCAAGGGGG GGGGCCCAAGGGGG Direction: Forward Position #: 1 Overlap #: 14 Alignment: GGGGCCCAAGGGGG GGGGCCCAAGGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Original Motif CCCCCTTGGGCCCC BBVGCCBVGGCCTV CCCSCYDVGGCCYC Direction: Forward Position #: 1 Overlap #: 14 Alignment: CCCCCTTGGGCCCC BBVGCCBVGGCCTV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement GMGGCCVDKGSGGG VAGGCCBBGGCVBB GMRGSCCHBGSSSSB Direction: Forward Position #: 2 Overlap #: 13 Alignment: GMGGCCVDKGSGGG- -VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Original Motif BSSSSCBHGGSCMRC BCCGCCCCGCCCCBB BCCGCCCCGSCCCVB Direction: Forward Position #: 1 Overlap #: 15 Alignment: BSSSSCBHGGSCMRC BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Reverse Complement Original Motif BVGGGSCGGGGCGGB DGVBCABTGDWGCGKRRCSR BVRGVSCVBKGVDGVGKRRCSR Direction: Forward Position #: 3 Overlap #: 13 Alignment: BVGGGSCGGGGCGGB------- --DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Reverse Complement MSGKKRCVCHVCYBBGSVCMVB MSGKKRCGCWDCABTGBBCD MSGKKRCGCHDCHBBGBBCHVB Direction: Forward Position #: 1 Overlap #: 20 Alignment: MSGKKRCVCHVCYBBGSVCMVB MSGKKRCGCWDCABTGBBCD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 7 Original Motif Reverse Complement MSGKKRCGCHDCHBBGBBCHVB MSGGGGCGGGGYSG MSGGGGCGSDGCVBBGBBCHVB Direction: Forward Position #: 1 Overlap #: 14 Alignment: MSGKKRCGCHDCHBBGBBCHVB MSGGGGCGGGGYSG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Original Motif BVDGBBCVBVGCHSCGCCCCSY HVGCCCCGCCCCBB BVDVVGCCCCGCCCCGCCCCSY Direction: Forward Position #: 4 Overlap #: 14 Alignment: BVDGBBCVBVGCHSCGCCCCSY ---HVGCCCCGCCCCBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SP1 Combined Motif Reverse Complement Reverse Complement MSGGGGCGGGGCGGGGCVVHVB GGGGGYGGGG MGGGGGCGGGGCGGGGCVVHVB Direction: Forward Position #: 2 Overlap #: 10 Alignment: MSGGGGCGGGGCGGGGCVVHVB -GGGGGYGGGG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif SP1 Original Motif Reverse Complement MGGGGGCGGGGCGGGGCVVHVB GGGGGYGGGG VGGGGBBGGGGCGGGGCVVHVB Direction: Forward Position #: 1 Overlap #: 10 Alignment: MGGGGGCGGGGCGGGGCVVHVB GGGGGYGGGG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 55 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Pax5 Original Motif Original Motif DGVBCABTGDWGCGKRRCSR DGVBCABTGDWGCGKRRCSR DGVBCABTGDWGCGKRRCSR Direction: Backward Position #: 1 Overlap #: 20 Alignment: DGVBCABTGDWGCGKRRCSR DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Reverse Complement MSGKKRCGCWDCABTGBBCD BBGGGGCGGGGCGGB HSGGGGCGSKGCRBBGBBCD Direction: Forward Position #: 1 Overlap #: 15 Alignment: MSGKKRCGCWDCABTGBBCD BBGGGGCGGGGCGGB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Original Motif HGVBCVBMGCYSCGCCCCSD HVGCCCCGCCCCBB HGVBCVGCSCCGCSCCCCSD Direction: Forward Position #: 5 Overlap #: 14 Alignment: HGVBCVBMGCYSCGCCCCSD ----HVGCCCCGCCCCBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 7 Combined Motif Original Motif Original Motif HGVBCVGCSCCGCSCCCCSD CSKCCCCGCCCCSY HGVBCVGCCCCGCCCCSYSD Direction: Forward Position #: 5 Overlap #: 14 Alignment: HGVBCVGCSCCGCSCCCCSD ----CSKCCCCGCCCCSY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 2 Original Motif Reverse Complement HGVBCVGCCCCGCCCCSYSD MTMMTCMMTCTKCK MDMVBVVCBCYGCBCCSYSD Direction: Forward Position #: 1 Overlap #: 14 Alignment: HGVBCVGCCCCGCCCCSYSD MTMMTCMMTCTKCK------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Reverse Complement Original Motif HSKSGGBGCMGVGVVBVRHR SGGTCACGTGACCS HSKSGGTSMCGTGASSVRHR Direction: Forward Position #: 4 Overlap #: 14 Alignment: HSKSGGBGCMGVGVVBVRHR ---SGGTCACGTGACCS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Original Motif Original Motif HSKSGGTSMCGTGASSVRHR GGGGCCCAAGGGGG HGGGGSYSAMGGGGGSVRHR Direction: Forward Position #: 2 Overlap #: 14 Alignment: HSKSGGTSMCGTGASSVRHR -GGGGCCCAAGGGGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PLAG1 Combined Motif Reverse Complement Reverse Complement MDMVSCCCCCRTSKSCCCCD CCCCCTTGGGCCCC MDMVCCCCCYDDGGCCCCCD Direction: Forward Position #: 5 Overlap #: 14 Alignment: MDMVSCCCCCRTSKSCCCCD ----CCCCCTTGGGCCCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Original Motif MDMVCCCCCYDDGGCCCCCD BBVGCCBVGGCCTV MDMVSCCSCCDVGGCCYCCD Direction: Forward Position #: 5 Overlap #: 14 Alignment: MDMVCCCCCYDDGGCCCCCD ----BBVGCCBVGGCCTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Reverse Complement MDMVSCCSCCDVGGCCYCCD VAGGCCBBGGCVBB VAGGCCBBSSBVGGCCYCCD Direction: Forward Position #: 1 Overlap #: 14 Alignment: MDMVSCCSCCDVGGCCYCCD VAGGCCBBGGCVBB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 56 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ArntAhr ArntAhr Original Motif Original Motif YGCGTG YGCGTG YGCGTG Direction: Backward Position #: 1 Overlap #: 6 Alignment: YGCGTG YGCGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Original Motif YGCGTG HGCGTGGGCGK YGCGTGGGCGK Direction: Forward Position #: 1 Overlap #: 6 Alignment: YGCGTG----- HGCGTGGGCGK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Egr1 Original Motif Original Motif YGCGTGGGCGK HGCGTGGGCGK HGCGTGGGCGK Direction: Forward Position #: 1 Overlap #: 11 Alignment: YGCGTGGGCGK HGCGTGGGCGK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HIF1AARNT Original Motif Original Motif HGCGTGGGCGK VBACGTGV VBRCGTGGGCGK Direction: Forward Position #: 2 Overlap #: 7 Alignment: -HGCGTGGGCGK VBACGTGV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif HIF1AARNT Original Motif Original Motif VBRCGTGGGCGK VBACGTGV VBRCGTGVGCGK Direction: Forward Position #: 1 Overlap #: 8 Alignment: VBRCGTGGGCGK VBACGTGV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement VBRCGTGVGCGK GCCACGTGSD GSCACGTGSGCGK Direction: Forward Position #: 2 Overlap #: 9 Alignment: -VBRCGTGVGCGK GCCACGTGSD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement GSCACGTGSGCGK GCCACGTGSD GCCACGTGSRCGK Direction: Forward Position #: 1 Overlap #: 10 Alignment: GSCACGTGSGCGK GCCACGTGSD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Original Motif GCCACGTGSRCGK HVGCCCCGCCCCBB HVGCCMCGYSCVBGK Direction: Forward Position #: 3 Overlap #: 12 Alignment: --GCCACGTGSRCGK HVGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Original Motif Reverse Complement HVGCCMCGYSCVBGK DCCACGTGCV HVGCCMCGTGCVBGK Direction: Forward Position #: 3 Overlap #: 10 Alignment: HVGCCMCGYSCVBGK --DCCACGTGCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Combined Motif Original Motif Reverse Complement HVGCCMCGTGCVBGK DCCACGTGCV HVGCCACGTGCVBGK Direction: Forward Position #: 3 Overlap #: 10 Alignment: HVGCCMCGTGCVBGK --DCCACGTGCV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 57 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mycn Mycn Original Motif Original Motif HSCACGTGGC HSCACGTGGC HSCACGTGGC Direction: Forward Position #: 1 Overlap #: 10 Alignment: HSCACGTGGC HSCACGTGGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Reverse Complement Reverse Complement GCCACGTGSD DCCACGTGCV GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSD DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Myc Original Motif Reverse Complement GCCACGTGSV DCCACGTGCV GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSV DCCACGTGCV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Original Motif GCCACGTGSV SGGTCACGTGACCS SGGYCACGTGMSCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GCCACGTGSV-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA Combined Motif Reverse Complement Original Motif SGSYCACGTGMCCS CCGGAAGTGVV SSCGSAMGTGVCCS Direction: Forward Position #: 2 Overlap #: 11 Alignment: SGSYCACGTGMCCS -CCGGAAGTGVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA Combined Motif Original Motif Original Motif SSCGSAMGTGVCCS CCGGAAGTGVV SCCGGAAGTGVVCS Direction: Forward Position #: 2 Overlap #: 11 Alignment: SSCGSAMGTGVCCS -CCGGAAGTGVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Original Motif Original Motif SCCGGAAGTGVVCS DGGGYGKGGC SCHGGRHGTGGCCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: SCCGGAAGTGVVCS --DGGGYGKGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Original Motif Original Motif SCHGGRHGTGGCCS DGGGYGKGGC SCDGGGYGKGGCCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: SCHGGRHGTGGCCS --DGGGYGKGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Original Motif SGGCCRCKCCCDGS BBVGCCBVGGCCTV BBSGCCVCGSCCTSS Direction: Forward Position #: 2 Overlap #: 13 Alignment: -SGGCCRCKCCCDGS BBVGCCBVGGCCTV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Original Motif Original Motif BBSGCCVCGSCCTSS BBVGCCBVGGCCTV BBSGCCBMGGCCTSS Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBSGCCVCGSCCTSS BBVGCCBVGGCCTV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 58 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myc Myc Original Motif Original Motif VGCACGTGGH VGCACGTGGH VGCACGTGGH Direction: Forward Position #: 1 Overlap #: 10 Alignment: VGCACGTGGH VGCACGTGGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Reverse Complement Reverse Complement DCCACGTGCV GCCACGTGSD GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: DCCACGTGCV GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Mycn Original Motif Reverse Complement GCCACGTGSV GCCACGTGSD GCCACGTGSV Direction: Forward Position #: 1 Overlap #: 10 Alignment: GCCACGTGSV GCCACGTGSD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Original Motif GCCACGTGSV SGGTCACGTGACCS SGGYCACGTGVVCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GCCACGTGSV-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA Combined Motif Reverse Complement Original Motif SGVBCACGTGMCCS CCGGAAGTGVV SSCGSAMGTGVCCS Direction: Forward Position #: 2 Overlap #: 11 Alignment: SGVBCACGTGMCCS -CCGGAAGTGVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA Combined Motif Original Motif Original Motif SSCGSAMGTGVCCS CCGGAAGTGVV SCCGGAAGTGVVCS Direction: Forward Position #: 2 Overlap #: 11 Alignment: SSCGSAMGTGVCCS -CCGGAAGTGVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Original Motif Original Motif SCCGGAAGTGVVCS DGGGYGKGGC SCHGGRHGTGGCCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: SCCGGAAGTGVVCS --DGGGYGKGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Klf4 Combined Motif Original Motif Original Motif SCHGGRHGTGGCCS DGGGYGKGGC SCDGGGYGKGGCCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: SCHGGRHGTGGCCS --DGGGYGKGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Original Motif Reverse Complement SCDGGGYGKGGCCS VAGGCCBBGGCVBB SCVRGGCSKGGSCSBB Direction: Forward Position #: 3 Overlap #: 12 Alignment: SCDGGGYGKGGCCS-- --VAGGCCBBGGCVBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Original Motif BBSGSCCRSGCCKVGS BBVGCCBVGGCCTV BBVGSCBVGGCCTVGS Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBSGSCCRSGCCKVGS BBVGCCBVGGCCTV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 59 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GABPA GABPA Original Motif Original Motif CCGGAAGTGVV CCGGAAGTGVV CCGGAAGTGVV Direction: Forward Position #: 1 Overlap #: 11 Alignment: CCGGAAGTGVV CCGGAAGTGVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Pax5 Reverse Complement Original Motif VVCACTTCCGG DGVBCABTGDWGCGKRRCSR DGVBCACTKCHGSGKRRCSR Direction: Forward Position #: 3 Overlap #: 11 Alignment: --VVCACTTCCGG------- DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pax5 Combined Motif Original Motif Original Motif DGVBCACTKCHGSGKRRCSR DGVBCABTGDWGCGKRRCSR DGVDVVBYDVBGVRGVRBVRCSR Direction: Forward Position #: 4 Overlap #: 17 Alignment: DGVBCACTKCHGSGKRRCSR--- ---DGVBCABTGDWGCGKRRCSR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zfx Combined Motif Reverse Complement Reverse Complement MSGMVBMVCMVCHVDMBBVHVCD VAGGCCBBGGCVBB MSGMVASGCCBCVGHVBBVHVCD Direction: Forward Position #: 5 Overlap #: 14 Alignment: MSGMVBMVCMVCHVDMBBVHVCD ----VAGGCCBBGGCVBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Zfx Reverse Complement Reverse Complement HGVDVVBVDCVGBGGCSTVRCSR VAGGCCBBGGCVBB HRGGCCBVGSCSBGGCSTVRCSR Direction: Forward Position #: 1 Overlap #: 14 Alignment: HGVDVVBVDCVGBGGCSTVRCSR VAGGCCBBGGCVBB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Reverse Complement Original Motif MSGMVASGCCBSGSCVBGGCCKD BCACCTGCABC CABCBSACCKGMSGMVASGCCBSGSCV Direction: Backward Position #: 5 Overlap #: 7 Alignment: MSGMVASGCCBSGSCVBGGCCKD---- ----------------BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-18-2018 14:32:36 Runtime: 695.758 seconds MOTIFSIM is written by Ngoc Tam L. 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