MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.2

INPUT

Input Parameters
Number of files: 4
Number of top significant motifs: 10
Number of best matches: 5
Similarity cutoff >= 0.75
Matching motif database: UniProbe Mus Musculus
Motif tree: Yes
Combined similar motifs: Yes
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
DREME_DM01.txt 51 1
MEME-CHIP_DM01.txt 9 2
PScanChIP_DM01.txt 27 3
RSAT_peak-motifs_DM01.txt 40 4

RESULTS

Best Matches in Database for Each Motif (Highest to Lowest)

Dataset #: 1 Motif ID: 1 Motif name: Motif 1

Original motif Reverse complement motif
Consensus sequence: AAAAAMAA Consensus sequence: TTYTTTTT

Best Matches for Motif ID 1 (Highest to Lowest)

Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0145772

Alignment:
HDYAAAHAAMAADHD
----AAAAAMAA---

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH

Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0169399

Alignment:
HHWAWGTAAAYAAAVDB
-------AAAAAMAA--

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH

Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0190253

Alignment:
HDHHTTTTATTKKHDD
----TTYTTTTT----

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0193071

Alignment:
DWAATRTAAACAAWVVB
-------AAAAAMAA--

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0203043

Alignment:
HHVBYTTTTTTTTDDVV
----TTYTTTTT-----

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Dataset #: 1 Motif ID: 2 Motif name: Motif 2

Original motif Reverse complement motif
Consensus sequence: ACACACAC Consensus sequence: GTGTGTGT

Best Matches for Motif ID 2 (Highest to Lowest)

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0

Alignment:
DVMVGCACACACKCVH
----ACACACAC----

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD

Motif ID: UP00026
Motif name: Zscan4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0334619

Alignment:
HVHRGCACACAAHHHV
----ACACACAC----

Original motif Reverse complement motif
Consensus sequence: HVHRGCACACAAHHHV Consensus sequence: BHHHTTGTGTGCKHVD

Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 10
Number of overlap: 8
Similarity score: 0.0433815

Alignment:
DHVDTGTGCACAYAHDH
---------ACACACAC

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.0444986

Alignment:
VYWVVHCRCCACMCACGAHSBHH
--------ACACACAC-------

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00042
Motif name: Gm397_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0453671

Alignment:
HHDATGTGCACATAMDH
-------ACACACAC--

Original motif Reverse complement motif
Consensus sequence: HHDATGTGCACATAMDH Consensus sequence: HHRTATGTGCACATHHD

Dataset #: 1 Motif ID: 3 Motif name: Motif 3

Original motif Reverse complement motif
Consensus sequence: AWATAMA Consensus sequence: TYTATWT

Best Matches for Motif ID 3 (Highest to Lowest)

Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0

Alignment:
HDHHTTTTATTKKHDD
-----TYTATWT----

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD

Motif ID: UP00134
Motif name: Hoxb13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0065385

Alignment:
VDHWTTTTATTGGDKB
-----TYTATWT----

Original motif Reverse complement motif
Consensus sequence: VRHCCAATAAAAWHHV Consensus sequence: VDHWTTTTATTGGDKB

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0.0124058

Alignment:
HDDDATTTTATTKVRDB
------TYTATWT----

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB

Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.0126252

Alignment:
HHWAWGTAAAYAAAVDB
-------AWATAMA---

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.0146887

Alignment:
DWAATRTAAACAAWVVB
---AWATAMA-------

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Dataset #: 1 Motif ID: 4 Motif name: Motif 4

Original motif Reverse complement motif
Consensus sequence: GAGRMAGR Consensus sequence: KCTRMCTC

Best Matches for Motif ID 4 (Highest to Lowest)

Motif ID: UP00103
Motif name: Jundm2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0033755

Alignment:
VDKDRTGASTCAYHDH
---KCTRMCTC-----

Original motif Reverse complement motif
Consensus sequence: VDKDRTGASTCAYHDH Consensus sequence: HDDKTGASTCAKHRDB

Motif ID: UP00146
Motif name: Pou6f1_3733.1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 8
Similarity score: 0.00747412

Alignment:
DHDASCTCATTATVHHB
KCTRMCTC---------

Original motif Reverse complement motif
Consensus sequence: VHHVATAATGAGSTDDH Consensus sequence: DHDASCTCATTATVHHB

Motif ID: UP00044
Motif name: Mafk_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.00896059

Alignment:
DWAAAWTGCTGACTH
-------KCTRMCTC

Original motif Reverse complement motif
Consensus sequence: DWAAAWTGCTGACTH Consensus sequence: HAGTCAGCAWTTTWD

Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0112412

Alignment:
HAAWDTGCTGACDWARH
------KCTRMCTC---

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH

Motif ID: UP00095
Motif name: Zfp691_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0122072

Alignment:
DABBWGACTCCTHDVHV
--KCTRMCTC-------

Original motif Reverse complement motif
Consensus sequence: DABBWGACTCCTHDVHV Consensus sequence: VHBDDAGGAGTCWBBTD

Dataset #: 1 Motif ID: 5 Motif name: Motif 5

Original motif Reverse complement motif
Consensus sequence: AAASAAAA Consensus sequence: TTTTSTTT

Best Matches for Motif ID 5 (Highest to Lowest)

Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.00219483

Alignment:
DDAATGTAAACAAAVVB
-------AAASAAAA--

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.00387372

Alignment:
DWAATRTAAACAAWVVB
-------AAASAAAA--

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.00467517

Alignment:
HDHADGTAAACAAAVVH
-------AAASAAAA--

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH

Motif ID: UP00074
Motif name: Isgf3g_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.00612789

Alignment:
VDRAAWCGAAACTDA
---AAASAAAA----

Original motif Reverse complement motif
Consensus sequence: VDRAAWCGAAACTDA Consensus sequence: TDAGTTTCGWTTKDV

Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.00632029

Alignment:
HDHHTTTTATTKKHDD
----TTTTSTTT----

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD

Dataset #: 1 Motif ID: 6 Motif name: Motif 6

Original motif Reverse complement motif
Consensus sequence: CCCASCMC Consensus sequence: GYGSTGGG

Best Matches for Motif ID 6 (Highest to Lowest)

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.00921145

Alignment:
HBDRCCMCGCCCHHHD
----CCCASCMC----

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 13
Number of overlap: 8
Similarity score: 0.00924564

Alignment:
DBCDWHCTGGGTGGTCMDHBBAH
---GYGSTGGG------------

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0121799

Alignment:
DBCCCCCCCCCCMYC
--CCCASCMC-----

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00033
Motif name: Zfp410_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.014495

Alignment:
BDDYYCATCCCATDDBD
---CCCASCMC------

Original motif Reverse complement motif
Consensus sequence: DVDDATGGGATGKMDDV Consensus sequence: BDDYYCATCCCATDDBD

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0175119

Alignment:
BHHDYGGGGGGGGBVD
---GYGSTGGG-----

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Dataset #: 1 Motif ID: 7 Motif name: Motif 7

Original motif Reverse complement motif
Consensus sequence: CACASASA Consensus sequence: TSTSTGTG

Best Matches for Motif ID 7 (Highest to Lowest)

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0

Alignment:
HBGYGTGTGTGCVRVD
---TSTSTGTG-----

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD

Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0113361

Alignment:
HDHTMTGTGCACADVHD
-TSTSTGTG--------

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD

Motif ID: UP00026
Motif name: Zscan4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0137391

Alignment:
BHHHTTGTGTGCKHVD
---TSTSTGTG-----

Original motif Reverse complement motif
Consensus sequence: HVHRGCACACAAHHHV Consensus sequence: BHHHTTGTGTGCKHVD

Motif ID: UP00042
Motif name: Gm397_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 8
Similarity score: 0.0176592

Alignment:
HHRTATGTGCACATHHD
-TSTSTGTG--------

Original motif Reverse complement motif
Consensus sequence: HHDATGTGCACATAMDH Consensus sequence: HHRTATGTGCACATHHD

Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 11
Number of overlap: 8
Similarity score: 0.0259903

Alignment:
DTVBDDRGACCACCCAGDWDGBH
----------CACASASA-----

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH

Dataset #: 1 Motif ID: 8 Motif name: Motif 8

Original motif Reverse complement motif
Consensus sequence: CTGGCYTY Consensus sequence: KAKGCCAG

Best Matches for Motif ID 8 (Highest to Lowest)

Motif ID: UP00035
Motif name: Hic1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0

Alignment:
DBBATGCCAACCHVHH
--KAKGCCAG------

Original motif Reverse complement motif
Consensus sequence: DBBATGCCAACCHVHH Consensus sequence: DDBHGGTTGGCATVBD

Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.00800487

Alignment:
DMTWDGTCAGCADWTTH
--KAKGCCAG-------

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH

Motif ID: UP00092
Motif name: Myb_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.013567

Alignment:
DBVKGGCAGTTGGTHB
-KAKGCCAG-------

Original motif Reverse complement motif
Consensus sequence: BDACCAACTGCCRBBH Consensus sequence: DBVKGGCAGTTGGTHB

Motif ID: UP00066
Motif name: Hnf4a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0148191

Alignment:
HHAYTGGACTTTHDBV
---CTGGCYTY-----

Original motif Reverse complement motif
Consensus sequence: BBHHAAAGTCCAMTHH Consensus sequence: HHAYTGGACTTTHDBV

Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 8
Similarity score: 0.0155988

Alignment:
VBBDMYCATCTGVHHBH
---------CTGGCYTY

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH

Dataset #: 1 Motif ID: 9 Motif name: Motif 9

Original motif Reverse complement motif
Consensus sequence: TTTWWAAA Consensus sequence: TTTWWAAA

Best Matches for Motif ID 9 (Highest to Lowest)

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0127432

Alignment:
VVVWTTGTTTAMATTWD
-----TTTWWAAA----

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Motif ID: UP00173
Motif name: Hoxc13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0173675

Alignment:
DHWTTTTAMGAGBDHH
---TTTWWAAA-----

Original motif Reverse complement motif
Consensus sequence: HHDBCTCRTAAAAWHD Consensus sequence: DHWTTTTAMGAGBDHH

Motif ID: UP00246
Motif name: Hoxa11
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0197493

Alignment:
DDDTTTTACGACDTDH
---TTTWWAAA-----

Original motif Reverse complement motif
Consensus sequence: HDADGTCGTAAAAHDD Consensus sequence: DDDTTTTACGACDTDH

Motif ID: UP00207
Motif name: Hoxb9
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0215252

Alignment:
HDHHTTTTATRGCKMV
---TTTWWAAA-----

Original motif Reverse complement motif
Consensus sequence: VRRGCMATAAAAHHHD Consensus sequence: HDHHTTTTATRGCKMV

Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0221208

Alignment:
BBVTTTGTTTACATTDD
-----TTTWWAAA----

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD

Dataset #: 1 Motif ID: 10 Motif name: Motif 10

Original motif Reverse complement motif
Consensus sequence: HTACATA Consensus sequence: TATGTAD

Best Matches for Motif ID 10 (Highest to Lowest)

Motif ID: UP00150
Motif name: Irx6
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0

Alignment:
AHWDBTACATGTADHTH
-------TATGTAD---

Original motif Reverse complement motif
Consensus sequence: HAHDTACATGTAVDWHT Consensus sequence: AHWDBTACATGTADHTH

Motif ID: UP00236
Motif name: Irx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.00149929

Alignment:
WVWDDTACATGTADDDW
-------TATGTAD---

Original motif Reverse complement motif
Consensus sequence: WDDDTACATGTADDWBW Consensus sequence: WVWDDTACATGTADDDW

Motif ID: UP00223
Motif name: Irx3_2226.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 7
Similarity score: 0.00245891

Alignment:
DDDHTACATGTAVWDHD
---HTACATA-------

Original motif Reverse complement motif
Consensus sequence: DDDHTACATGTAVWDHD Consensus sequence: DHDWBTACATGTAHDDD

Motif ID: UP00082
Motif name: Zfp187_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 7
Similarity score: 0.00347154

Alignment:
HWATTAGTACATAV
------HTACATA-

Original motif Reverse complement motif
Consensus sequence: BTATGTACTAATWH Consensus sequence: HWATTAGTACATAV

Motif ID: UP00223
Motif name: Irx3_0920.1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.00490323

Alignment:
DDWWBTACATGTADDDD
-------TATGTAD---

Original motif Reverse complement motif
Consensus sequence: DDDDTACATGTAVWWHD Consensus sequence: DDWWBTACATGTADDDD

Dataset #: 1 Motif ID: 11 Motif name: Motif 11

Original motif Reverse complement motif
Consensus sequence: CTGDGTTC Consensus sequence: GAACDCAG

Best Matches for Motif ID 11 (Highest to Lowest)

Motif ID: UP00019
Motif name: Zbtb12_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0140023

Alignment:
BDHRBGTTCTAGATCVB
-CTGDGTTC--------

Original motif Reverse complement motif
Consensus sequence: BDHRBGTTCTAGATCVB Consensus sequence: BBGATCTAGAACBKHDB

Motif ID: UP00006
Motif name: Zic3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0184124

Alignment:
DVHCYTGCTGTGHDH
GAACDCAG-------

Original motif Reverse complement motif
Consensus sequence: DDDCACAGCAKGHVD Consensus sequence: DVHCYTGCTGTGHDH

Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.0200294

Alignment:
BHDCVCAGCAGGHVD
GAACDCAG-------

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB

Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0221415

Alignment:
DVBCYTGCTGBGDDD
-------CTGDGTTC

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD

Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0234104

Alignment:
HBDDDAACAAAGRVBHH
----GAACDCAG-----

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH

Dataset #: 1 Motif ID: 12 Motif name: Motif 12

Original motif Reverse complement motif
Consensus sequence: GCACACAY Consensus sequence: MTGTGTGC

Best Matches for Motif ID 12 (Highest to Lowest)

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0

Alignment:
DVMVGCACACACKCVH
----GCACACAY----

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD

Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0213124

Alignment:
DHVDTGTGCACAYAHDH
-------GCACACAY--

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD

Motif ID: UP00026
Motif name: Zscan4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0223469

Alignment:
BHHHTTGTGTGCKHVD
----MTGTGTGC----

Original motif Reverse complement motif
Consensus sequence: HVHRGCACACAAHHHV Consensus sequence: BHHHTTGTGTGCKHVD

Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0256828

Alignment:
HDYTTGCACACGDHBH
-----GCACACAY---

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH

Motif ID: UP00042
Motif name: Gm397_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0295995

Alignment:
HHDATGTGCACATAMDH
-------GCACACAY--

Original motif Reverse complement motif
Consensus sequence: HHDATGTGCACATAMDH Consensus sequence: HHRTATGTGCACATHHD

Dataset #: 1 Motif ID: 13 Motif name: Motif 13

Original motif Reverse complement motif
Consensus sequence: GGAAGSAR Consensus sequence: MTSCTTCC

Best Matches for Motif ID 13 (Highest to Lowest)

Motif ID: UP00421
Motif name: Etv1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0

Alignment:
MVHBACCGGAAGTVDVH
-------GGAAGSAR--

Original motif Reverse complement motif
Consensus sequence: MVHBACCGGAAGTVDVH Consensus sequence: HBDBACTTCCGGTBHVY

Motif ID: UP00420
Motif name: Elk3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.00132573

Alignment:
DVBBACCGGAAGYDVVV
-------GGAAGSAR--

Original motif Reverse complement motif
Consensus sequence: DVBBACCGGAAGYDVVV Consensus sequence: VBVDMCTTCCGGTVBVD

Motif ID: UP00418
Motif name: Etv6
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0021068

Alignment:
DVHBTACTTCCGGHTHB
---MTSCTTCC------

Original motif Reverse complement motif
Consensus sequence: DVHBTACTTCCGGHTHB Consensus sequence: BHAHCCGGAAGTABDVD

Motif ID: UP00419
Motif name: Spic
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.00211278

Alignment:
VAAAGMGGAAGTWD
------GGAAGSAR

Original motif Reverse complement motif
Consensus sequence: VAAAGMGGAAGTWD Consensus sequence: DWACTTCCRCTTTB

Motif ID: UP00409
Motif name: Elf5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.00241654

Alignment:
BWAHSMGGAAGTWD
------GGAAGSAR

Original motif Reverse complement motif
Consensus sequence: BWAHSMGGAAGTWD Consensus sequence: DWACTTCCRSDTWV

Dataset #: 1 Motif ID: 14 Motif name: Motif 14

Original motif Reverse complement motif
Consensus sequence: KAAAATR Consensus sequence: MATTTTY

Best Matches for Motif ID 14 (Highest to Lowest)

Motif ID: UP00023
Motif name: Sox30_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0

Alignment:
HHHHMHATTGTTBDHD
-----MATTTTY----

Original motif Reverse complement motif
Consensus sequence: DHDBAACAATDRHHHH Consensus sequence: HHHHMHATTGTTBDHD

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.00226759

Alignment:
VDKVYAATAAAATDDDH
-------KAAAATR---

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB

Motif ID: UP00064
Motif name: Sox18_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0.00263629

Alignment:
BWBHATTGTTBTHDHH
---MATTTTY------

Original motif Reverse complement motif
Consensus sequence: BWBHATTGTTBTHDHH Consensus sequence: HHDHABAACAATHBWV

Motif ID: UP00044
Motif name: Mafk_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 7
Similarity score: 0.00352186

Alignment:
MBHTGCADTTTTTHV
------MATTTTY--

Original motif Reverse complement motif
Consensus sequence: VHAAAAADTGCAHBR Consensus sequence: MBHTGCADTTTTTHV

Motif ID: UP00101
Motif name: Sox12_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 7
Similarity score: 0.00617655

Alignment:
THATTGTTVTHAWH
-MATTTTY------

Original motif Reverse complement motif
Consensus sequence: THATTGTTVTHAWH Consensus sequence: DWTHAVAACAATHA

Dataset #: 1 Motif ID: 15 Motif name: Motif 15

Original motif Reverse complement motif
Consensus sequence: AGCCCWGG Consensus sequence: CCWGGGCT

Best Matches for Motif ID 15 (Highest to Lowest)

Motif ID: UP00095
Motif name: Zfp691_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0

Alignment:
DDHBYGAGCACTGBHHB
------AGCCCWGG---

Original motif Reverse complement motif
Consensus sequence: BDHVCAGTGCTCMBHDD Consensus sequence: DDHBYGAGCACTGBHHB

Motif ID: UP00082
Motif name: Zfp187_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0100601

Alignment:
VHMDGGACVAGGRCDH
-------CCWGGGCT-

Original motif Reverse complement motif
Consensus sequence: DDGMCCTBGTCCHYHV Consensus sequence: VHMDGGACVAGGRCDH

Motif ID: UP00066
Motif name: Hnf4a_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0131051

Alignment:
BDBVMGGGGTCAABHDV
--CCWGGGCT-------

Original motif Reverse complement motif
Consensus sequence: BDBVMGGGGTCAABHDV Consensus sequence: BHHVTTGACCCCYVVDB

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.0132772

Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
--------CCWGGGCT-------

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00079
Motif name: Esrra_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0150014

Alignment:
DBBHHTGACCCCTBBYV
-------AGCCCWGG--

Original motif Reverse complement motif
Consensus sequence: VKBBAGGGGTCAHDBBH Consensus sequence: DBBHHTGACCCCTBBYV

Dataset #: 1 Motif ID: 16 Motif name: Motif 16

Original motif Reverse complement motif
Consensus sequence: GAGCCATC Consensus sequence: GATGGCTC

Best Matches for Motif ID 16 (Highest to Lowest)

Motif ID: UP00103
Motif name: Jundm2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0

Alignment:
HDDKTGASTCAKHRDB
-----GAGCCATC---

Original motif Reverse complement motif
Consensus sequence: VDKDRTGASTCAYHDH Consensus sequence: HDDKTGASTCAKHRDB

Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.00755596

Alignment:
HVDDVCAGATGKYHBBV
-------GATGGCTC--

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH

Motif ID: UP00035
Motif name: Hic1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.00844628

Alignment:
DBBATGCCAACCHVHH
---GAGCCATC-----

Original motif Reverse complement motif
Consensus sequence: DBBATGCCAACCHVHH Consensus sequence: DDBHGGTTGGCATVBD

Motif ID: UP00033
Motif name: Zfp410_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0101495

Alignment:
DVDDATGGGATGKMDDV
--------GATGGCTC-

Original motif Reverse complement motif
Consensus sequence: DVDDATGGGATGKMDDV Consensus sequence: BDDYYCATCCCATDDBD

Motif ID: UP00528
Motif name: Foxm1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0102701

Alignment:
VHVRCAYGATGCATCDTVVADTH
-------GATGGCTC--------

Original motif Reverse complement motif
Consensus sequence: HADTBVADGATGCATCMTGMVHB Consensus sequence: VHVRCAYGATGCATCDTVVADTH

Dataset #: 1 Motif ID: 17 Motif name: Motif 17

Original motif Reverse complement motif
Consensus sequence: GGGAGGRR Consensus sequence: MMCCTCCC

Best Matches for Motif ID 17 (Highest to Lowest)

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0

Alignment:
DBCCCCCCCCCCMYC
--MMCCTCCC-----

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.00441712

Alignment:
MHHHWHYTMCCHCCCACVAABVH
-------MMCCTCCC--------

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.00658839

Alignment:
DHHDGGGCGRGGKHBH
----GGGAGGRR----

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.00819387

Alignment:
HVBCCCCCCCCMHHHB
---MMCCTCCC-----

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00033
Motif name: Zfp410_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00976538

Alignment:
DVDDATGGGATGKMDDV
------GGGAGGRR---

Original motif Reverse complement motif
Consensus sequence: DVDDATGGGATGKMDDV Consensus sequence: BDDYYCATCCCATDDBD

Dataset #: 1 Motif ID: 18 Motif name: Motif 18

Original motif Reverse complement motif
Consensus sequence: GRRAGAGA Consensus sequence: TCTCTMKC

Best Matches for Motif ID 18 (Highest to Lowest)

Motif ID: UP00040
Motif name: Irf5_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0

Alignment:
VBHAKTCTCGHTHHV
-----TCTCTMKC--

Original motif Reverse complement motif
Consensus sequence: BHDAHCGAGARTHBV Consensus sequence: VBHAKTCTCGHTHHV

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 8
Similarity score: 0.00591803

Alignment:
BDHDDADAGATAAGADHBDHVD
----GRRAGAGA----------

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00080
Motif name: Gata5_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.0157485

Alignment:
VVBHRAGATATCWDHBB
--GRRAGAGA-------

Original motif Reverse complement motif
Consensus sequence: VVBHRAGATATCWDHBB Consensus sequence: VVHHWGATATCTMHBBV

Motif ID: UP00239
Motif name: Obox2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0165309

Alignment:
DBRGGGGGATTAAMTAH
-GRRAGAGA--------

Original motif Reverse complement motif
Consensus sequence: DBRGGGGGATTAAMTAH Consensus sequence: HTARTTAATCCCCCKBD

Motif ID: UP00153
Motif name: Pitx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0181357

Alignment:
HBVDRGGGATTAAMDHH
-GRRAGAGA--------

Original motif Reverse complement motif
Consensus sequence: HBVDRGGGATTAAMDHH Consensus sequence: HHDRTTAATCCCKHBVH

Dataset #: 1 Motif ID: 19 Motif name: Motif 19

Original motif Reverse complement motif
Consensus sequence: CCTGGARC Consensus sequence: GKTCCAGG

Best Matches for Motif ID 19 (Highest to Lowest)

Motif ID: UP00019
Motif name: Zbtb12_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0

Alignment:
BDHRBGTTCTAGATCVB
-----GKTCCAGG----

Original motif Reverse complement motif
Consensus sequence: BDHRBGTTCTAGATCVB Consensus sequence: BBGATCTAGAACBKHDB

Motif ID: UP00082
Motif name: Zfp187_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0114365

Alignment:
VHMDGGACVAGGRCDH
----GKTCCAGG----

Original motif Reverse complement motif
Consensus sequence: DDGMCCTBGTCCHYHV Consensus sequence: VHMDGGACVAGGRCDH

Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0166042

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
----------GKTCCAGG----

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH

Motif ID: UP00043
Motif name: Bcl6b_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0186859

Alignment:
VHHATTCCTYGAAAGD
------CCTGGARC--

Original motif Reverse complement motif
Consensus sequence: DCTTTCKAGGAATHHV Consensus sequence: VHHATTCCTYGAAAGD

Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0193598

Alignment:
HHBVHTGACCTTGVDHD
--------CCTGGARC-

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD

Dataset #: 1 Motif ID: 20 Motif name: Motif 20

Original motif Reverse complement motif
Consensus sequence: ATTAMAGG Consensus sequence: CCTYTAAT

Best Matches for Motif ID 20 (Highest to Lowest)

Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.00264223

Alignment:
VDDAGATCAAAGGKDDD
-----ATTAMAGG----

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD

Motif ID: UP00083
Motif name: Tcf7l2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.00766457

Alignment:
BDDASATCAAAGGMDDD
-----ATTAMAGG----

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATSTDDV Consensus sequence: BDDASATCAAAGGMDDD

Motif ID: UP00152
Motif name: Arx
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0109266

Alignment:
WBHAKTAATTAMKGBAV
-------ATTAMAGG--

Original motif Reverse complement motif
Consensus sequence: VTBCRYTAATTARTDBW Consensus sequence: WBHAKTAATTAMKGBAV

Motif ID: UP00209
Motif name: Cart1_1275.1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 8
Similarity score: 0.0133543

Alignment:
BVMDTTAATTAABBDDV
-CCTYTAAT--------

Original motif Reverse complement motif
Consensus sequence: BVMDTTAATTAABBDDV Consensus sequence: VHHVVTTAATTAADRVB

Motif ID: UP00187
Motif name: Alx4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.0138063

Alignment:
BVHHVKTAATTAMDDCG
--------ATTAMAGG-

Original motif Reverse complement motif
Consensus sequence: CGHDYTAATTARBHHVB Consensus sequence: BVHHVKTAATTAMDDCG

Dataset #: 1 Motif ID: 21 Motif name: Motif 21

Original motif Reverse complement motif
Consensus sequence: AAACAAAC Consensus sequence: GTTTGTTT

Best Matches for Motif ID 21 (Highest to Lowest)

Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0

Alignment:
BBVTTTGTTTACATTDD
--GTTTGTTT-------

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD

Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.00214871

Alignment:
HDHADGTAAACAAAVVH
-------AAACAAAC--

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.00385351

Alignment:
VVVWTTGTTTAMATTWD
--GTTTGTTT-------

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0108706

Alignment:
HDHRTAAACAAAHDDD
-----AAACAAAC---

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH

Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0132351

Alignment:
BDVTTTKTTTACWTWHH
--GTTTGTTT-------

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH

Dataset #: 1 Motif ID: 22 Motif name: Motif 22

Original motif Reverse complement motif
Consensus sequence: GTGGTGGY Consensus sequence: MCCACCAC

Best Matches for Motif ID 22 (Highest to Lowest)

Motif ID: UP00047
Motif name: Zbtb7b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0

Alignment:
BBDVHGGTGGTCBKDDB
---GTGGTGGY------

Original motif Reverse complement motif
Consensus sequence: BDDRVGACCACCHBDVB Consensus sequence: BBDVHGGTGGTCBKDDB

Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.00961551

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
-----GTGGTGGY---------

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.0126856

Alignment:
HGDHVHKGACCACCCGGBGBGDB
--------MCCACCAC-------

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.015156

Alignment:
CVHBSCGGGTGGTCMHVHHCDH
-----GTGGTGGY---------

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 8
Similarity score: 0.0162913

Alignment:
BTBVTCVTGGGTGGTCMVVDVBB
-------GTGGTGGY--------

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Dataset #: 1 Motif ID: 23 Motif name: Motif 23

Original motif Reverse complement motif
Consensus sequence: MTSTGTA Consensus sequence: TACASAR

Best Matches for Motif ID 23 (Highest to Lowest)

Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0

Alignment:
HDHTMTGTGCACADVHD
----MTSTGTA------

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD

Motif ID: UP00193
Motif name: Rhox11_2205.1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0.000572275

Alignment:
WVVHWTWACAGCGHHVT
------TACASAR----

Original motif Reverse complement motif
Consensus sequence: AVDHCGCTGTWAWDVVW Consensus sequence: WVVHWTWACAGCGHHVT

Motif ID: UP00082
Motif name: Zfp187_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 7
Similarity score: 0.000715028

Alignment:
HWATTAGTACATAV
-------TACASAR

Original motif Reverse complement motif
Consensus sequence: BTATGTACTAATWH Consensus sequence: HWATTAGTACATAV

Motif ID: UP00193
Motif name: Rhox11_1765.2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0.00195524

Alignment:
WVVHWTWACAGCGBHBT
------TACASAR----

Original motif Reverse complement motif
Consensus sequence: AVDVCGCTGTWAWDVVW Consensus sequence: WVVHWTWACAGCGBHBT

Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0.0025777

Alignment:
HHWAWGTAAAYAAAVDB
------TACASAR----

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH

Dataset #: 1 Motif ID: 24 Motif name: Motif 24

Original motif Reverse complement motif
Consensus sequence: CACGB Consensus sequence: BCGTG

Best Matches for Motif ID 24 (Highest to Lowest)

Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 5
Similarity score: 0

Alignment:
DBDHCGTGTGCAAMDH
---BCGTG--------

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 5
Similarity score: 0.0184689

Alignment:
YDYBDHTMCACGTGGADDBMDGT
--------CACGB----------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM

Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 5
Similarity score: 0.0193222

Alignment:
RDHDBVDTCACGTGASBHVHDH
--------CACGB---------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM

Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 5
Similarity score: 0.0231779

Alignment:
HHVBABCACGTGSTHD
------CACGB-----

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD

Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.02459

Alignment:
BBGHCACGCGACDD
----CACGB-----

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB

Dataset #: 1 Motif ID: 25 Motif name: Motif 25

Original motif Reverse complement motif
Consensus sequence: TTTAWW Consensus sequence: WWTAAA

Best Matches for Motif ID 25 (Highest to Lowest)

Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0

Alignment:
HDHHTTTTATTKKHDD
-----TTTAWW-----

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD

Motif ID: UP00134
Motif name: Hoxb13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.00930561

Alignment:
VRHCCAATAAAAWHHV
-----WWTAAA-----

Original motif Reverse complement motif
Consensus sequence: VRHCCAATAAAAWHHV Consensus sequence: VDHWTTTTATTGGDKB

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0106116

Alignment:
VDKVYAATAAAATDDDH
-----WWTAAA------

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 6
Similarity score: 0.0135319

Alignment:
VVVWTTGTTTAMATTWD
-------TTTAWW----

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Motif ID: UP00133
Motif name: Cdx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0138323

Alignment:
HRHTTTTATYMCCVBD
----TTTAWW------

Original motif Reverse complement motif
Consensus sequence: DVVGGYMATAAAAHKH Consensus sequence: HRHTTTTATYMCCVBD

Dataset #: 1 Motif ID: 26 Motif name: Motif 26

Original motif Reverse complement motif
Consensus sequence: RGARGAAA Consensus sequence: TTTCKTCK

Best Matches for Motif ID 26 (Highest to Lowest)

Motif ID: UP00074
Motif name: Isgf3g_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0

Alignment:
TDAGTTTCGWTTKDV
----TTTCKTCK---

Original motif Reverse complement motif
Consensus sequence: VDRAAWCGAAACTDA Consensus sequence: TDAGTTTCGWTTKDV

Motif ID: UP00040
Motif name: Irf5_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.000164051

Alignment:
BDKGTTTCGKTWDDD
----TTTCKTCK---

Original motif Reverse complement motif
Consensus sequence: DDDWAYCGAAACYDV Consensus sequence: BDKGTTTCGKTWDDD

Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00378534

Alignment:
HHBBMCTTTGTTHDDBH
------TTTCKTCK---

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH

Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00434344

Alignment:
DDDYCCTTTGATCTDDV
------TTTCKTCK---

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD

Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00478756

Alignment:
HHBTMCTTTGTTMDDVH
------TTTCKTCK---

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH

Dataset #: 1 Motif ID: 27 Motif name: Motif 27

Original motif Reverse complement motif
Consensus sequence: CTGCCTKY Consensus sequence: KRAGGCAG

Best Matches for Motif ID 27 (Highest to Lowest)

Motif ID: UP00031
Motif name: Zbtb3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0

Alignment:
DDBBBCACTGCABTBBB
-------CTGCCTKY--

Original motif Reverse complement motif
Consensus sequence: DDBBBCACTGCABTBBB Consensus sequence: BBBAVTGCAGTGBBVDD

Motif ID: UP00092
Motif name: Myb_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.00277335

Alignment:
BDACCAACTGCCRBBH
-------CTGCCTKY-

Original motif Reverse complement motif
Consensus sequence: BDACCAACTGCCRBBH Consensus sequence: DBVKGGCAGTTGGTHB

Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.00419316

Alignment:
DMTWDGTCAGCADWTTH
--KRAGGCAG-------

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH

Motif ID: UP00081
Motif name: Mybl1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.00632134

Alignment:
BHCGGCAGTTGGBBB
KRAGGCAG-------

Original motif Reverse complement motif
Consensus sequence: BBVCCAACTGCCGHB Consensus sequence: BHCGGCAGTTGGBBB

Motif ID: UP00010
Motif name: Tcfap2b_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.00866202

Alignment:
DYGCCYBARGGCAH
------KRAGGCAG

Original motif Reverse complement motif
Consensus sequence: DYGCCYBARGGCAH Consensus sequence: HTGCCMTVKGGCMD

Dataset #: 1 Motif ID: 28 Motif name: Motif 28

Original motif Reverse complement motif
Consensus sequence: AVAGAAA Consensus sequence: TTTCTVT

Best Matches for Motif ID 28 (Highest to Lowest)

Motif ID: UP00074
Motif name: Isgf3g_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0

Alignment:
TDAGTTTCGWTTKDV
----TTTCTVT----

Original motif Reverse complement motif
Consensus sequence: VDRAAWCGAAACTDA Consensus sequence: TDAGTTTCGWTTKDV

Motif ID: UP00018
Motif name: Irf4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.0019906

Alignment:
TBDKGTTTCGMTDHV
-----TTTCTVT---

Original motif Reverse complement motif
Consensus sequence: VDDAYCGAAACYDVA Consensus sequence: TBDKGTTTCGMTDHV

Motif ID: UP00040
Motif name: Irf5_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.00322534

Alignment:
BDKGTTTCGKTWDDD
----TTTCTVT----

Original motif Reverse complement motif
Consensus sequence: DDDWAYCGAAACYDV Consensus sequence: BDKGTTTCGKTWDDD

Motif ID: UP00011
Motif name: Irf6_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.00827965

Alignment:
DHDBTKGTTTCGHTHDD
-------TTTCTVT---

Original motif Reverse complement motif
Consensus sequence: HDDAHCGAAACYAVDDD Consensus sequence: DHDBTKGTTTCGHTHDD

Motif ID: UP00086
Motif name: Irf3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.0115602

Alignment:
BARAAHSGAAACYV
----AVAGAAA---

Original motif Reverse complement motif
Consensus sequence: BARAAHSGAAACYV Consensus sequence: VMGTTTCSDTTMTB

Dataset #: 1 Motif ID: 29 Motif name: Motif 29

Original motif Reverse complement motif
Consensus sequence: CCMGCCCC Consensus sequence: GGGGCYGG

Best Matches for Motif ID 29 (Highest to Lowest)

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0

Alignment:
BDHHMCGCCCCCTHVBB
---CCMGCCCC------

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.000996799

Alignment:
DBCCCCCCCCCCMYC
---CCMGCCCC----

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00552479

Alignment:
HBDRCCMCGCCCHHHD
-----CCMGCCCC---

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00007
Motif name: Egr1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.00785177

Alignment:
HCCGCCCCCGCAHB
CCMGCCCC------

Original motif Reverse complement motif
Consensus sequence: HCCGCCCCCGCAHB Consensus sequence: VHTGCGGGGGCGGH

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0188994

Alignment:
HVBCCCCCCCCMHHHB
---CCMGCCCC-----

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Dataset #: 1 Motif ID: 30 Motif name: Motif 30

Original motif Reverse complement motif
Consensus sequence: CAGGARGM Consensus sequence: YCMTCCTG

Best Matches for Motif ID 30 (Highest to Lowest)

Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0

Alignment:
BHDCVCAGCAGGHVD
-----CAGGARGM--

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB

Motif ID: UP00006
Motif name: Zic3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.00147653

Alignment:
DDDCACAGCAKGHVD
-----CAGGARGM--

Original motif Reverse complement motif
Consensus sequence: DDDCACAGCAKGHVD Consensus sequence: DVHCYTGCTGTGHDH

Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.00420108

Alignment:
HHDCVCAGCAKGVVD
-----CAGGARGM--

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD

Motif ID: UP00420
Motif name: Elk3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.00964839

Alignment:
DVBBACCGGAAGYDVVV
-----CAGGARGM----

Original motif Reverse complement motif
Consensus sequence: DVBBACCGGAAGYDVVV Consensus sequence: VBVDMCTTCCGGTVBVD

Motif ID: UP00421
Motif name: Etv1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0118889

Alignment:
MVHBACCGGAAGTVDVH
-----CAGGARGM----

Original motif Reverse complement motif
Consensus sequence: MVHBACCGGAAGTVDVH Consensus sequence: HBDBACTTCCGGTBHVY

Dataset #: 1 Motif ID: 31 Motif name: Motif 31

Original motif Reverse complement motif
Consensus sequence: CTGWSCTC Consensus sequence: GAGSWCAG

Best Matches for Motif ID 31 (Highest to Lowest)

Motif ID: UP00095
Motif name: Zfp691_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0

Alignment:
DDHBYGAGCACTGBHHB
-----GAGSWCAG----

Original motif Reverse complement motif
Consensus sequence: BDHVCAGTGCTCMBHDD Consensus sequence: DDHBYGAGCACTGBHHB

Motif ID: UP00079
Motif name: Esrra_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0111158

Alignment:
VKBBAGGGGTCAHDBBH
-----GAGSWCAG----

Original motif Reverse complement motif
Consensus sequence: VKBBAGGGGTCAHDBBH Consensus sequence: DBBHHTGACCCCTBBYV

Motif ID: UP00048
Motif name: Rara
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0141173

Alignment:
DHBHAAAGGTCACVHD
-----GAGSWCAG---

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCACVHD Consensus sequence: HHVGTGACCTTTDVDD

Motif ID: UP00020
Motif name: Atf1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.014652

Alignment:
DMDMTGACGTCAKHBD
-----GAGSWCAG---

Original motif Reverse complement motif
Consensus sequence: DBDRTGACGTCAYHRD Consensus sequence: DMDMTGACGTCAKHBD

Motif ID: UP00053
Motif name: Rxra_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0149745

Alignment:
DBHBDTGACCCCDHVHB
----CTGWSCTC-----

Original motif Reverse complement motif
Consensus sequence: DBHBDTGACCCCDHVHB Consensus sequence: VHBHDGGGGTCAHBHBD

Dataset #: 1 Motif ID: 32 Motif name: Motif 32

Original motif Reverse complement motif
Consensus sequence: AVATGGC Consensus sequence: GCCATVT

Best Matches for Motif ID 32 (Highest to Lowest)

Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 7
Similarity score: 0

Alignment:
HVDDVCAGATGKYHBBV
------AVATGGC----

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH

Motif ID: UP00010
Motif name: Tcfap2b_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.0136194

Alignment:
HTGCCMTVKGGCMD
--GCCATVT-----

Original motif Reverse complement motif
Consensus sequence: DYGCCYBARGGCAH Consensus sequence: HTGCCMTVKGGCMD

Motif ID: UP00035
Motif name: Hic1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 7
Similarity score: 0.0137364

Alignment:
DDBHGGTTGGCATVBD
--------GCCATVT-

Original motif Reverse complement motif
Consensus sequence: DBBATGCCAACCHVHH Consensus sequence: DDBHGGTTGGCATVBD

Motif ID: UP00186
Motif name: Meis1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.015326

Alignment:
WAVBASCTGTCAAWVH
----AVATGGC-----

Original motif Reverse complement motif
Consensus sequence: WAVBASCTGTCAAWVH Consensus sequence: DBWTTGACAGSTBVTW

Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.015763

Alignment:
TCDAMVBGACGCMAKDDDVBBD
----------GCCATVT-----

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD

Dataset #: 1 Motif ID: 33 Motif name: Motif 33

Original motif Reverse complement motif
Consensus sequence: CMTTTCC Consensus sequence: GGAAARG

Best Matches for Motif ID 33 (Highest to Lowest)

Motif ID: UP00424
Motif name: Gm4881
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0

Alignment:
VBBHAYTTCCGGTDDD
---CMTTTCC------

Original motif Reverse complement motif
Consensus sequence: VBBHAYTTCCGGTDDD Consensus sequence: DHDACCGGAAMTHBVB

Motif ID: UP00411
Motif name: Erg
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.000621119

Alignment:
VBBVAYTTCCGGTDDB
---CMTTTCC------

Original motif Reverse complement motif
Consensus sequence: VBBVAYTTCCGGTDDB Consensus sequence: BDDACCGGAAKTVBVB

Motif ID: UP00416
Motif name: Fli1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.00145577

Alignment:
VBBVAYTTCCGGTDDH
---CMTTTCC------

Original motif Reverse complement motif
Consensus sequence: VBBVAYTTCCGGTDDH Consensus sequence: DHDACCGGAAKTBBVV

Motif ID: UP00422
Motif name: Etv3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.00170257

Alignment:
VBBHAYTTCCGGTHDH
---CMTTTCC------

Original motif Reverse complement motif
Consensus sequence: VBBHAYTTCCGGTHDH Consensus sequence: DHHACCGGAAKTHBBB

Motif ID: UP00418
Motif name: Etv6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0.00598804

Alignment:
DVHBTACTTCCGGHTHB
----CMTTTCC------

Original motif Reverse complement motif
Consensus sequence: DVHBTACTTCCGGHTHB Consensus sequence: BHAHCCGGAAGTABDVD

Dataset #: 1 Motif ID: 34 Motif name: Motif 34

Original motif Reverse complement motif
Consensus sequence: ATATTTA Consensus sequence: TAAATAT

Best Matches for Motif ID 34 (Highest to Lowest)

Motif ID: UP00059
Motif name: Arid5a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0

Alignment:
VYAATATTGVDADH
---ATATTTA----

Original motif Reverse complement motif
Consensus sequence: VYAATATTGVDADH Consensus sequence: HDTDVCAATATTMV

Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0.00064316

Alignment:
HHWAWGTAAAYAAAVDB
------TAAATAT----

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH

Motif ID: UP00108
Motif name: Alx3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00321096

Alignment:
VHVAKMTAATTAKTHBW
-----ATATTTA-----

Original motif Reverse complement motif
Consensus sequence: WVHAYTAATTARYTVHV Consensus sequence: VHVAKMTAATTAKTHBW

Motif ID: UP00154
Motif name: Dlx3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00327881

Alignment:
BHVVDATAATTACMVHH
-----ATATTTA-----

Original motif Reverse complement motif
Consensus sequence: BHVVDATAATTACMVHH Consensus sequence: DHVRGTAATTATHVVDV

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 7
Similarity score: 0.00408089

Alignment:
DWAATRTAAACAAWVVB
------TAAATAT----

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Dataset #: 1 Motif ID: 35 Motif name: Motif 35

Original motif Reverse complement motif
Consensus sequence: KGCTGGS Consensus sequence: SCCAGCR

Best Matches for Motif ID 35 (Highest to Lowest)

Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0

Alignment:
DVBCYTGCTGBGDDD
-----KGCTGGS---

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD

Motif ID: UP00006
Motif name: Zic3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.000909168

Alignment:
DVHCYTGCTGTGHDH
-----KGCTGGS---

Original motif Reverse complement motif
Consensus sequence: DDDCACAGCAKGHVD Consensus sequence: DVHCYTGCTGTGHDH

Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.00192341

Alignment:
DVHCCTGCTGBGDDB
-----KGCTGGS---

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB

Motif ID: UP00035
Motif name: Hic1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00396963

Alignment:
DDBHGGTTGGCATVBD
----KGCTGGS-----

Original motif Reverse complement motif
Consensus sequence: DBBATGCCAACCHVHH Consensus sequence: DDBHGGTTGGCATVBD

Motif ID: UP00045
Motif name: Mafb_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.010167

Alignment:
DMTWDGTCAGCADWTTH
-----SCCAGCR-----

Original motif Reverse complement motif
Consensus sequence: HAAWDTGCTGACDWARH Consensus sequence: DMTWDGTCAGCADWTTH

Dataset #: 1 Motif ID: 36 Motif name: Motif 36

Original motif Reverse complement motif
Consensus sequence: CATGGTGG Consensus sequence: CCACCATG

Best Matches for Motif ID 36 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 8
Similarity score: 0

Alignment:
CBDMCMGGGTGGTCCHVBVBAH
----CATGGTGG----------

Original motif Reverse complement motif
Consensus sequence: HTBVVVDGGACCACCCRGRDBG Consensus sequence: CBDMCMGGGTGGTCCHVBVBAH

Motif ID: UP00538
Motif name: Gli1_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 8
Similarity score: 0.00612072

Alignment:
HGDHVHKGACCACCCGGBGBGDB
---------CCACCATG------

Original motif Reverse complement motif
Consensus sequence: BHCBCBCCGGGTGGTCYHVHDCH Consensus sequence: HGDHVHKGACCACCCGGBGBGDB

Motif ID: UP00047
Motif name: Zbtb7b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0105198

Alignment:
BDDRVGACCACCHBDVB
-------CCACCATG--

Original motif Reverse complement motif
Consensus sequence: BDDRVGACCACCHBDVB Consensus sequence: BBDVHGGTGGTCBKDDB

Motif ID: UP00540
Motif name: Gli3_v016060_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 11
Number of overlap: 8
Similarity score: 0.013412

Alignment:
CVHBSCGGGTGGTCMHVHHCDH
----CATGGTGG----------

Original motif Reverse complement motif
Consensus sequence: HDGHHBHRGACCACCCGSVDVG Consensus sequence: CVHBSCGGGTGGTCMHVHHCDH

Motif ID: UP00540
Motif name: Gli3_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0205127

Alignment:
DVTTVVCVYGGHGGYCHHDMYB
------CATGGTGG--------

Original motif Reverse complement motif
Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH

Dataset #: 1 Motif ID: 37 Motif name: Motif 37

Original motif Reverse complement motif
Consensus sequence: GYATGTGY Consensus sequence: KCACATKC

Best Matches for Motif ID 37 (Highest to Lowest)

Motif ID: UP00042
Motif name: Gm397_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0

Alignment:
HHRTATGTGCACATHHD
--GYATGTGY-------

Original motif Reverse complement motif
Consensus sequence: HHDATGTGCACATAMDH Consensus sequence: HHRTATGTGCACATHHD

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.00557849

Alignment:
HBGYGTGTGTGCVRVD
----GYATGTGY----

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD

Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0.0130509

Alignment:
RDHDBVDTCACGTGASBHVHDH
-------KCACATKC-------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM

Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0145166

Alignment:
HDHTMTGTGCACADVHD
--------KCACATKC-

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD

Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0157001

Alignment:
DHDBHGCACCTGBDDVB
-----KCACATKC----

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB

Dataset #: 1 Motif ID: 38 Motif name: Motif 38

Original motif Reverse complement motif
Consensus sequence: CCTYCTCC Consensus sequence: GGAGMAGG

Best Matches for Motif ID 38 (Highest to Lowest)

Motif ID: UP00082
Motif name: Zfp187_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0

Alignment:
DDGMCCTBGTCCHYHV
----CCTYCTCC----

Original motif Reverse complement motif
Consensus sequence: DDGMCCTBGTCCHYHV Consensus sequence: VHMDGGACVAGGRCDH

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0171216

Alignment:
DBCCCCCCCCCCMYC
---CCTYCTCC----

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0279988

Alignment:
BHDCVCAGCAGGHVD
----GGAGMAGG---

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB

Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0293564

Alignment:
DVMHHDHKGACCCTCCTSVCBH
-----------CCTYCTCC---

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH

Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0307412

Alignment:
HHDCVCAGCAKGVVD
----GGAGMAGG---

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD

Dataset #: 1 Motif ID: 39 Motif name: Motif 39

Original motif Reverse complement motif
Consensus sequence: ACAGMCAG Consensus sequence: CTGYCTGT

Best Matches for Motif ID 39 (Highest to Lowest)

Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0

Alignment:
HDHDDCCAGACABBHVH
-----ACAGMCAG----

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD

Motif ID: UP00205
Motif name: Pknox2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 8
Similarity score: 0.0021284

Alignment:
VHATTGACAGSKSVTH
--ACAGMCAG------

Original motif Reverse complement motif
Consensus sequence: HAVSRSCTGTCAATHB Consensus sequence: VHATTGACAGSKSVTH

Motif ID: UP00092
Motif name: Myb_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.00279845

Alignment:
BDACCAACTGCCRBBH
------ACAGMCAG--

Original motif Reverse complement motif
Consensus sequence: BDACCAACTGCCRBBH Consensus sequence: DBVKGGCAGTTGGTHB

Motif ID: UP00258
Motif name: Tgif2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.00437554

Alignment:
VBWTTGACAGCTVBTT
------ACAGMCAG--

Original motif Reverse complement motif
Consensus sequence: AABBAGCTGTCAAWVV Consensus sequence: VBWTTGACAGCTVBTT

Motif ID: UP00122
Motif name: Tgif1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0048776

Alignment:
DBVVAGCTGTCAWWVTH
------CTGYCTGT---

Original motif Reverse complement motif
Consensus sequence: DABWWTGACAGCTVVBD Consensus sequence: DBVVAGCTGTCAWWVTH

Dataset #: 1 Motif ID: 40 Motif name: Motif 40

Original motif Reverse complement motif
Consensus sequence: CCACASC Consensus sequence: GSTGTGG

Best Matches for Motif ID 40 (Highest to Lowest)

Motif ID: UP00068
Motif name: Eomes_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0

Alignment:
BVHDAGGTGTGAAAHHH
-----GSTGTGG-----

Original motif Reverse complement motif
Consensus sequence: BVHDAGGTGTGAAAHHH Consensus sequence: HHHTTTCACACCTDHBV

Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.00152086

Alignment:
DVHCCTGCTGBGDDB
------GSTGTGG--

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00208498

Alignment:
HBDRCCMCGCCCHHHD
----CCACASC-----

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00068
Motif name: Eomes_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00280198

Alignment:
VVBVCKACACCTHVBV
----CCACASC-----

Original motif Reverse complement motif
Consensus sequence: VBVDAGGTGTYGVBBV Consensus sequence: VVBVCKACACCTHVBV

Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 7
Similarity score: 0.00486301

Alignment:
DVBCYTGCTGBGDDD
------GSTGTGG--

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD

Dataset #: 1 Motif ID: 41 Motif name: Motif 41

Original motif Reverse complement motif
Consensus sequence: CTCAGARA Consensus sequence: TKTCTGAG

Best Matches for Motif ID 41 (Highest to Lowest)

Motif ID: UP00173
Motif name: Hoxc13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0

Alignment:
HHDBCTCRTAAAAWHD
----CTCAGARA----

Original motif Reverse complement motif
Consensus sequence: HHDBCTCRTAAAAWHD Consensus sequence: DHWTTTTAMGAGBDHH

Motif ID: UP00183
Motif name: Hoxa13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.00055063

Alignment:
HDHBCTCGTAAAAWBD
----CTCAGARA----

Original motif Reverse complement motif
Consensus sequence: HDHBCTCGTAAAAWBD Consensus sequence: DVWTTTTACGAGBHDH

Motif ID: UP00006
Motif name: Zic3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0111384

Alignment:
DVHCYTGCTGTGHDH
----TKTCTGAG---

Original motif Reverse complement motif
Consensus sequence: DDDCACAGCAKGHVD Consensus sequence: DVHCYTGCTGTGHDH

Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0116539

Alignment:
HVHBVTGTCTGGDDHDD
-----TKTCTGAG----

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD

Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0135011

Alignment:
DVBCYTGCTGBGDDD
----TKTCTGAG---

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD

Dataset #: 1 Motif ID: 42 Motif name: Motif 42

Original motif Reverse complement motif
Consensus sequence: CCYAGAAC Consensus sequence: GTTCTKGG

Best Matches for Motif ID 42 (Highest to Lowest)

Motif ID: UP00019
Motif name: Zbtb12_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0

Alignment:
BBGATCTAGAACBKHDB
----CCYAGAAC-----

Original motif Reverse complement motif
Consensus sequence: BDHRBGTTCTAGATCVB Consensus sequence: BBGATCTAGAACBKHDB

Motif ID: UP00019
Motif name: Zbtb12_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0290375

Alignment:
HVHCRTTAGAACBYD
----CCYAGAAC---

Original motif Reverse complement motif
Consensus sequence: HVHCRTTAGAACBYD Consensus sequence: DKBGTTCTAAKGHBH

Motif ID: UP00039
Motif name: Foxj3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0420446

Alignment:
DVHWDTGTTWTGDTBDH
------GTTCTKGG---

Original motif Reverse complement motif
Consensus sequence: HDBAHCAWAACADWDVD Consensus sequence: DVHWDTGTTWTGDTBDH

Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0435243

Alignment:
HVHBVTGTCTGGDDHDD
-----GTTCTKGG----

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD

Motif ID: UP00413
Motif name: Elf4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.0440977

Alignment:
DBBHACTTCCGGKWTH
-----GTTCTKGG---

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGKWTH Consensus sequence: HAWYCCGGAAGTHBBD

Dataset #: 1 Motif ID: 43 Motif name: Motif 43

Original motif Reverse complement motif
Consensus sequence: CTCTGCCY Consensus sequence: KGGCAGAG

Best Matches for Motif ID 43 (Highest to Lowest)

Motif ID: UP00031
Motif name: Zbtb3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.00233137

Alignment:
DDBBBCACTGCABTBBB
-----CTCTGCCY----

Original motif Reverse complement motif
Consensus sequence: DDBBBCACTGCABTBBB Consensus sequence: BBBAVTGCAGTGBBVDD

Motif ID: UP00035
Motif name: Hic1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.010233

Alignment:
DDBHGGTTGGCATVBD
-------KGGCAGAG-

Original motif Reverse complement motif
Consensus sequence: DBBATGCCAACCHVHH Consensus sequence: DDBHGGTTGGCATVBD

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0136504

Alignment:
DHHDGGGCGRGGKHBH
---KGGCAGAG-----

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00092
Motif name: Myb_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0179013

Alignment:
DBVKGGCAGTTGGTHB
---KGGCAGAG-----

Original motif Reverse complement motif
Consensus sequence: BDACCAACTGCCRBBH Consensus sequence: DBVKGGCAGTTGGTHB

Motif ID: UP00035
Motif name: Hic1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.0198349

Alignment:
VHHDWTGGGCAMDHBH
------KGGCAGAG--

Original motif Reverse complement motif
Consensus sequence: DBDDRTGCCCAWDHDV Consensus sequence: VHHDWTGGGCAMDHBH

Dataset #: 1 Motif ID: 44 Motif name: Motif 44

Original motif Reverse complement motif
Consensus sequence: AGAAATG Consensus sequence: CATTTCT

Best Matches for Motif ID 44 (Highest to Lowest)

Motif ID: UP00118
Motif name: Pou4f3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0

Alignment:
HVTTATTAATKADKHC
----AGAAATG-----

Original motif Reverse complement motif
Consensus sequence: HVTTATTAATKADKHC Consensus sequence: GHYHTYATTAATAAVH

Motif ID: UP00147
Motif name: Nkx2-6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.0027402

Alignment:
AAHVTTAAGTGGHTDD
----AGAAATG-----

Original motif Reverse complement motif
Consensus sequence: DDADCCACTTAAVHTT Consensus sequence: AAHVTTAAGTGGHTDD

Motif ID: UP00044
Motif name: Mafk_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.00356175

Alignment:
MBHTGCADTTTTTHV
-----CATTTCT---

Original motif Reverse complement motif
Consensus sequence: VHAAAAADTGCAHBR Consensus sequence: MBHTGCADTTTTTHV

Motif ID: UP00055
Motif name: Hbp1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0.00569123

Alignment:
HHDWTSAATGAATDDB
---AGAAATG------

Original motif Reverse complement motif
Consensus sequence: HHDWTSAATGAATDDB Consensus sequence: VDHATTCATTSAWDDH

Motif ID: UP00236
Motif name: Irx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0.00626845

Alignment:
WDDDTACATGTADDWBW
---AGAAATG-------

Original motif Reverse complement motif
Consensus sequence: WDDDTACATGTADDWBW Consensus sequence: WVWDDTACATGTADDDW

Dataset #: 1 Motif ID: 45 Motif name: Motif 45

Original motif Reverse complement motif
Consensus sequence: ATTATTAW Consensus sequence: WTAATAAT

Best Matches for Motif ID 45 (Highest to Lowest)

Motif ID: UP00016
Motif name: Sry_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.00260392

Alignment:
VDDDATTATAATHDHV
----ATTATTAW----

Original motif Reverse complement motif
Consensus sequence: BHDHATTATAATDDDV Consensus sequence: VDDDATTATAATHDHV

Motif ID: UP00146
Motif name: Pou6f1_1731.2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.00439717

Alignment:
DHDASCTCATTAWVVHV
-----ATTATTAW----

Original motif Reverse complement motif
Consensus sequence: VHVVWTAATGAGSTDDH Consensus sequence: DHDASCTCATTAWVVHV

Motif ID: UP00118
Motif name: Pou4f3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.00941819

Alignment:
GHYHTYATTAATAAVH
------ATTATTAW--

Original motif Reverse complement motif
Consensus sequence: HVTTATTAATKADKHC Consensus sequence: GHYHTYATTAATAAVH

Motif ID: UP00146
Motif name: Pou6f1_3733.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0131321

Alignment:
DHDASCTCATTATVHHB
-----ATTATTAW----

Original motif Reverse complement motif
Consensus sequence: VHHVATAATGAGSTDDH Consensus sequence: DHDASCTCATTATVHHB

Motif ID: UP00200
Motif name: Nkx6-1_2825.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 8
Similarity score: 0.015553

Alignment:
CBVMRTAATTAATTHBH
-------ATTATTAW--

Original motif Reverse complement motif
Consensus sequence: DVHAATTAATTAMYBBG Consensus sequence: CBVMRTAATTAATTHBH

Dataset #: 1 Motif ID: 46 Motif name: Motif 46

Original motif Reverse complement motif
Consensus sequence: GGAAASA Consensus sequence: TSTTTCC

Best Matches for Motif ID 46 (Highest to Lowest)

Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0

Alignment:
BDVTTTKTTTACWTWHH
-----TSTTTCC-----

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH

Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00624148

Alignment:
BBVTTTGTTTACATTDD
-----TSTTTCC-----

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.00652531

Alignment:
VVVWTTGTTTAMATTWD
-----TSTTTCC-----

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.00845848

Alignment:
DVVTTTGTTTACDTHDH
-----TSTTTCC-----

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH

Motif ID: UP00424
Motif name: Gm4881
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.0113154

Alignment:
DHDACCGGAAMTHBVB
------GGAAASA---

Original motif Reverse complement motif
Consensus sequence: VBBHAYTTCCGGTDDD Consensus sequence: DHDACCGGAAMTHBVB

Dataset #: 1 Motif ID: 47 Motif name: Motif 47

Original motif Reverse complement motif
Consensus sequence: KGCTGCTG Consensus sequence: CAGCAGCR

Best Matches for Motif ID 47 (Highest to Lowest)

Motif ID: UP00027
Motif name: Osr1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0

Alignment:
DHBHGCTACKGTHDHH
---KGCTGCTG-----

Original motif Reverse complement motif
Consensus sequence: HHDHACRGTAGCHVHD Consensus sequence: DHBHGCTACKGTHDHH

Motif ID: UP00052
Motif name: Osr2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.00109484

Alignment:
HHHHGCTACKGTHVHH
---KGCTGCTG-----

Original motif Reverse complement motif
Consensus sequence: HHVHACRGTAGCHHHD Consensus sequence: HHHHGCTACKGTHVHH

Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0101682

Alignment:
DVHCCTGCTGBGDDB
--KGCTGCTG-----

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB

Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0142996

Alignment:
HHDCVCAGCAKGVVD
-----CAGCAGCR--

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD

Motif ID: UP00006
Motif name: Zic3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.01699

Alignment:
DVHCYTGCTGTGHDH
--KGCTGCTG-----

Original motif Reverse complement motif
Consensus sequence: DDDCACAGCAKGHVD Consensus sequence: DVHCYTGCTGTGHDH

Dataset #: 1 Motif ID: 48 Motif name: Motif 48

Original motif Reverse complement motif
Consensus sequence: ACACWG Consensus sequence: CWGTGT

Best Matches for Motif ID 48 (Highest to Lowest)

Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0

Alignment:
HBDDRAACAAAGRABHH
------ACACWG-----

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH

Motif ID: UP00031
Motif name: Zbtb3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.000107057

Alignment:
BBBAVTGCAGTGBBVDD
-------CWGTGT----

Original motif Reverse complement motif
Consensus sequence: DDBBBCACTGCABTBBB Consensus sequence: BBBAVTGCAGTGBBVDD

Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.00451967

Alignment:
HBDDDAACAAAGRVBHH
------ACACWG-----

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.00474978

Alignment:
HBGYGTGTGTGCVRVD
----CWGTGT------

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD

Motif ID: UP00095
Motif name: Zfp691_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 6
Similarity score: 0.0121829

Alignment:
DDHBYGAGCACTGBHHB
-------ACACWG----

Original motif Reverse complement motif
Consensus sequence: BDHVCAGTGCTCMBHDD Consensus sequence: DDHBYGAGCACTGBHHB

Dataset #: 1 Motif ID: 49 Motif name: Motif 49

Original motif Reverse complement motif
Consensus sequence: AGATAAAR Consensus sequence: KTTTATCT

Best Matches for Motif ID 49 (Highest to Lowest)

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 8
Similarity score: 0

Alignment:
BDHDDADAGATAAGADHBDHVD
-------AGATAAAR-------

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00100
Motif name: Gata6_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.00785656

Alignment:
DHDVDWGATAAGADDHV
-----AGATAAAR----

Original motif Reverse complement motif
Consensus sequence: DHDVDWGATAAGADDHV Consensus sequence: VHDDTCTTATCWHBDHD

Motif ID: UP00080
Motif name: Gata5_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0123861

Alignment:
HDDDCTGATAAGRVDDD
-----AGATAAAR----

Original motif Reverse complement motif
Consensus sequence: HDDDCTGATAAGRVDDD Consensus sequence: DDHBKCTTATCAGDDDH

Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.0188096

Alignment:
HDHHTTTTATTKKHDD
----KTTTATCT----

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0206207

Alignment:
HDDDATTTTATTKVRDB
-----KTTTATCT----

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB

Dataset #: 1 Motif ID: 50 Motif name: Motif 50

Original motif Reverse complement motif
Consensus sequence: GAAGAGCA Consensus sequence: TGCTCTTC

Best Matches for Motif ID 50 (Highest to Lowest)

Motif ID: UP00095
Motif name: Zfp691_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0

Alignment:
BDHVCAGTGCTCMBHDD
-------TGCTCTTC--

Original motif Reverse complement motif
Consensus sequence: BDHVCAGTGCTCMBHDD Consensus sequence: DDHBYGAGCACTGBHHB

Motif ID: UP00420
Motif name: Elk3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.00640383

Alignment:
DVBBACCGGAAGYDVVV
--------GAAGAGCA-

Original motif Reverse complement motif
Consensus sequence: DVBBACCGGAAGYDVVV Consensus sequence: VBVDMCTTCCGGTVBVD

Motif ID: UP00013
Motif name: Gabpa_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 8
Similarity score: 0.0102626

Alignment:
HVHHACCGGAAGTDHHV
--------GAAGAGCA-

Original motif Reverse complement motif
Consensus sequence: HVHHACCGGAAGTDHHV Consensus sequence: BHHHACTTCCGGTHHBD

Motif ID: UP00173
Motif name: Hoxc13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.0113649

Alignment:
DHWTTTTAMGAGBDHH
------GAAGAGCA--

Original motif Reverse complement motif
Consensus sequence: HHDBCTCRTAAAAWHD Consensus sequence: DHWTTTTAMGAGBDHH

Motif ID: UP00404
Motif name: Elf2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0117359

Alignment:
DBBHACTTCCGGDWDB
-TGCTCTTC-------

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGDWDB Consensus sequence: BDWDCCGGAAGTHBBD

Dataset #: 1 Motif ID: 51 Motif name: Motif 51

Original motif Reverse complement motif
Consensus sequence: AGAGCWGG Consensus sequence: CCWGCTCT

Best Matches for Motif ID 51 (Highest to Lowest)

Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0

Alignment:
BHDCVCAGCAGGHVD
----AGAGCWGG---

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB

Motif ID: UP00006
Motif name: Zic3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.000488488

Alignment:
DVHCYTGCTGTGHDH
---CCWGCTCT----

Original motif Reverse complement motif
Consensus sequence: DDDCACAGCAKGHVD Consensus sequence: DVHCYTGCTGTGHDH

Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 8
Similarity score: 0.00566514

Alignment:
HHDCVCAGCAKGVVD
----AGAGCWGG---

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD

Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0.0121797

Alignment:
BHHDTCCCACTCBDBV
-----CCWGCTCT---

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV

Motif ID: UP00019
Motif name: Zbtb12_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0132554

Alignment:
BBGATCTAGAACBKHDB
-------AGAGCWGG--

Original motif Reverse complement motif
Consensus sequence: BDHRBGTTCTAGATCVB Consensus sequence: BBGATCTAGAACBKHDB

Dataset #: 2 Motif ID: 52 Motif name: Motif 52

Original motif Reverse complement motif
Consensus sequence: AGVCAGG Consensus sequence: CCTGVCT

Best Matches for Motif ID 52 (Highest to Lowest)

Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 7
Similarity score: 0

Alignment:
VBHHVCAGGTGCDVDHD
--AGVCAGG--------

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB

Motif ID: UP00203
Motif name: Pknox1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00125989

Alignment:
VVWTTGACAGSTSBKD
----AGVCAGG-----

Original motif Reverse complement motif
Consensus sequence: DRVSASCTGTCAAWVV Consensus sequence: VVWTTGACAGSTSBKD

Motif ID: UP00205
Motif name: Pknox2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.00252122

Alignment:
VHATTGACAGSKSVTH
----AGVCAGG-----

Original motif Reverse complement motif
Consensus sequence: HAVSRSCTGTCAATHB Consensus sequence: VHATTGACAGSKSVTH

Motif ID: UP00226
Motif name: Mrg1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00269319

Alignment:
BHWTTGACAGSTBBTW
----AGVCAGG-----

Original motif Reverse complement motif
Consensus sequence: WAVBASCTGTCAAWHB Consensus sequence: BHWTTGACAGSTBBTW

Motif ID: UP00186
Motif name: Meis1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00619435

Alignment:
DBWTTGACAGSTBVTW
----AGVCAGG-----

Original motif Reverse complement motif
Consensus sequence: WAVBASCTGTCAAWVH Consensus sequence: DBWTTGACAGSTBVTW

Dataset #: 2 Motif ID: 53 Motif name: Motif 53

Original motif Reverse complement motif
Consensus sequence: TSTGTR Consensus sequence: MACASA

Best Matches for Motif ID 53 (Highest to Lowest)

Motif ID: UP00026
Motif name: Zscan4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0

Alignment:
BHHHTTGTGTGCKHVD
-----TSTGTR-----

Original motif Reverse complement motif
Consensus sequence: HVHRGCACACAAHHHV Consensus sequence: BHHHTTGTGTGCKHVD

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.00423357

Alignment:
HBGYGTGTGTGCVRVD
-----TSTGTR-----

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD

Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.00980483

Alignment:
HDHTMTGTGCACADVHD
---TSTGTR--------

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD

Motif ID: UP00042
Motif name: Gm397_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0166332

Alignment:
HHRTATGTGCACATHHD
---TSTGTR--------

Original motif Reverse complement motif
Consensus sequence: HHDATGTGCACATAMDH Consensus sequence: HHRTATGTGCACATHHD

Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0213483

Alignment:
HDHRTAAACAAAHDDD
------MACASA----

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH

Dataset #: 2 Motif ID: 54 Motif name: Motif 54

Original motif Reverse complement motif
Consensus sequence: RGAAA Consensus sequence: TTTCK

Best Matches for Motif ID 54 (Highest to Lowest)

Motif ID: UP00018
Motif name: Irf4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0

Alignment:
TBDKGTTTCGMTDHV
-----TTTCK-----

Original motif Reverse complement motif
Consensus sequence: VDDAYCGAAACYDVA Consensus sequence: TBDKGTTTCGMTDHV

Motif ID: UP00074
Motif name: Isgf3g_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 5
Similarity score: 0.00225908

Alignment:
TDAGTTTCGWTTKDV
----TTTCK------

Original motif Reverse complement motif
Consensus sequence: VDRAAWCGAAACTDA Consensus sequence: TDAGTTTCGWTTKDV

Motif ID: UP00040
Motif name: Irf5_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 5
Similarity score: 0.00434877

Alignment:
BDKGTTTCGKTWDDD
----TTTCK------

Original motif Reverse complement motif
Consensus sequence: DDDWAYCGAAACYDV Consensus sequence: BDKGTTTCGKTWDDD

Motif ID: UP00011
Motif name: Irf6_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.0136873

Alignment:
DHDBTKGTTTCGHTHDD
-------TTTCK-----

Original motif Reverse complement motif
Consensus sequence: HDDAHCGAAACYAVDDD Consensus sequence: DHDBTKGTTTCGHTHDD

Motif ID: UP00043
Motif name: Bcl6b_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 5
Similarity score: 0.0141224

Alignment:
DCTTTCKAGGAATHHV
--TTTCK---------

Original motif Reverse complement motif
Consensus sequence: DCTTTCKAGGAATHHV Consensus sequence: VHHATTCCTYGAAAGD

Dataset #: 2 Motif ID: 55 Motif name: Motif 55

Original motif Reverse complement motif
Consensus sequence: TTTAAAA Consensus sequence: TTTTAAA

Best Matches for Motif ID 55 (Highest to Lowest)

Motif ID: UP00173
Motif name: Hoxc13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0

Alignment:
DHWTTTTAMGAGBDHH
----TTTAAAA-----

Original motif Reverse complement motif
Consensus sequence: HHDBCTCRTAAAAWHD Consensus sequence: DHWTTTTAMGAGBDHH

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.00269372

Alignment:
VVVWTTGTTTAMATTWD
-------TTTAAAA---

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Motif ID: UP00245
Motif name: Hoxc10
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.00395798

Alignment:
VBDDTTTACGACDDDH
----TTTAAAA-----

Original motif Reverse complement motif
Consensus sequence: HDDDGTCGTAAADHBB Consensus sequence: VBDDTTTACGACDDDH

Motif ID: UP00246
Motif name: Hoxa11
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00543955

Alignment:
DDDTTTTACGACDTDH
----TTTAAAA-----

Original motif Reverse complement motif
Consensus sequence: HDADGTCGTAAAAHDD Consensus sequence: DDDTTTTACGACDTDH

Motif ID: UP00183
Motif name: Hoxa13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.00548253

Alignment:
DVWTTTTACGAGBHDH
----TTTAAAA-----

Original motif Reverse complement motif
Consensus sequence: HDHBCTCGTAAAAWBD Consensus sequence: DVWTTTTACGAGBHDH

Dataset #: 2 Motif ID: 56 Motif name: Motif 56

Original motif Reverse complement motif
Consensus sequence: CACGGA Consensus sequence: TCCGTG

Best Matches for Motif ID 56 (Highest to Lowest)

Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 6
Similarity score: 0

Alignment:
HDYTTGCACACGDHBH
--------CACGGA--

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH

Motif ID: UP00413
Motif name: Elf4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 6
Similarity score: 0.00585124

Alignment:
DBBHACTTCCGGKWTH
-------TCCGTG---

Original motif Reverse complement motif
Consensus sequence: DBBHACTTCCGGKWTH Consensus sequence: HAWYCCGGAAGTHBBD

Motif ID: UP00015
Motif name: Ehf_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.00729902

Alignment:
VBDABCCGGAAGTDD
----CACGGA-----

Original motif Reverse complement motif
Consensus sequence: VBDABCCGGAAGTDD Consensus sequence: DDACTTCCGGBTHBB

Motif ID: UP00418
Motif name: Etv6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.00854253

Alignment:
BHAHCCGGAAGTABDVD
---CACGGA--------

Original motif Reverse complement motif
Consensus sequence: DVHBTACTTCCGGHTHB Consensus sequence: BHAHCCGGAAGTABDVD

Motif ID: UP00415
Motif name: Elk4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.00956651

Alignment:
DHDACCGGAAKKHBVB
---CACGGA-------

Original motif Reverse complement motif
Consensus sequence: VBBHRYTTCCGGTDDH Consensus sequence: DHDACCGGAAKKHBVB

Dataset #: 2 Motif ID: 57 Motif name: Motif 57

Original motif Reverse complement motif
Consensus sequence: SAGGAA Consensus sequence: TTCCTS

Best Matches for Motif ID 57 (Highest to Lowest)

Motif ID: UP00409
Motif name: Elf5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0

Alignment:
BWAHSMGGAAGTWD
----SAGGAA----

Original motif Reverse complement motif
Consensus sequence: BWAHSMGGAAGTWD Consensus sequence: DWACTTCCRSDTWV

Motif ID: UP00015
Motif name: Ehf_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.0107799

Alignment:
VBDABCCGGAAGTDD
-----SAGGAA----

Original motif Reverse complement motif
Consensus sequence: VBDABCCGGAAGTDD Consensus sequence: DDACTTCCGGBTHBB

Motif ID: UP00085
Motif name: Sfpi1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0111702

Alignment:
BDAWGVGGAAGTDH
----SAGGAA----

Original motif Reverse complement motif
Consensus sequence: BDAWGVGGAAGTDH Consensus sequence: HDACTTCCBCWTDV

Motif ID: UP00090
Motif name: Elf3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.0129245

Alignment:
TDAMTTCCYYDTD
----TTCCTS---

Original motif Reverse complement motif
Consensus sequence: DAHMMGGAARTDA Consensus sequence: TDAMTTCCYYDTD

Motif ID: UP00419
Motif name: Spic
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.0156312

Alignment:
VAAAGMGGAAGTWD
----SAGGAA----

Original motif Reverse complement motif
Consensus sequence: VAAAGMGGAAGTWD Consensus sequence: DWACTTCCRCTTTB

Dataset #: 2 Motif ID: 58 Motif name: Motif 58

Original motif Reverse complement motif
Consensus sequence: CACACACACACACA Consensus sequence: TGTGTGTGTGTGTG

Best Matches for Motif ID 58 (Highest to Lowest)

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 14
Similarity score: 0.0412006

Alignment:
HVBDAGCGBGGGTGGCRDBDDDB
TGTGTGTGTGTGTG---------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0416527

Alignment:
DVMVGCACACACKCVH
-CACACACACACACA-

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 14
Similarity score: 0.0449549

Alignment:
MHHHWHYTMCCHCCCACVAABVH
--------CACACACACACACA-

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY

Motif ID: UP00025
Motif name: Foxk1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0479822

Alignment:
HDDTGTTKTTKTHHD
-TGTGTGTGTGTGTG

Original motif Reverse complement motif
Consensus sequence: HHHAYAAYAACAHHH Consensus sequence: HDDTGTTKTTKTHHD

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0489492

Alignment:
BADHBDHCGCCCMCGCAHHDBBV
-------CACACACACACACA--

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Dataset #: 2 Motif ID: 59 Motif name: Motif 59

Original motif Reverse complement motif
Consensus sequence: CTBCCTCHSYCYCC Consensus sequence: GGMGKSHGAGGBAG

Best Matches for Motif ID 59 (Highest to Lowest)

Motif ID: UP00013
Motif name: Gabpa_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0333718

Alignment:
CYDBYWTCCSMHBVVH
-CTBCCTCHSYCYCC-

Original motif Reverse complement motif
Consensus sequence: CYDBYWTCCSMHBVVH Consensus sequence: DBVVDRSGGAWKVHKG

Motif ID: UP00099
Motif name: Ascl2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0436108

Alignment:
HVDVGGGHGGGGDBHB
-GGMGKSHGAGGBAG-

Original motif Reverse complement motif
Consensus sequence: BHVDCCCCDCCCBDBH Consensus sequence: HVDVGGGHGGGGDBHB

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0445099

Alignment:
BDHHMCGCCCCCTHVBB
-CTBCCTCHSYCYCC--

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Motif ID: UP00539
Motif name: Gli2_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 14
Similarity score: 0.0448549

Alignment:
RTHBSYCGCCMCMYVCGBTVDH
--CTBCCTCHSYCYCC------

Original motif Reverse complement motif
Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Consensus sequence: HDBABCGBKRGYGGCGMSBHAK

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.045689

Alignment:
DBCCCCCCCCCCMYC
-CTBCCTCHSYCYCC

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Dataset #: 2 Motif ID: 60 Motif name: Motif 60

Original motif Reverse complement motif
Consensus sequence: AADAAAAMAAAAAM Consensus sequence: YTTTTTRTTTTDTT

Best Matches for Motif ID 60 (Highest to Lowest)

Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0143339

Alignment:
HDTYTTGTTWTKDDDT
YTTTTTRTTTTDTT--

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0231061

Alignment:
VBDDAAAAAAAAMVBHH
-AADAAAAMAAAAAM--

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0.0239537

Alignment:
HDHADGTAAACAAAVVH
---AADAAAAMAAAAAM

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH

Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0256033

Alignment:
HBDDDAACAAAGRVBHH
AADAAAAMAAAAAM---

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0256443

Alignment:
DWAATRTAAACAAWVVB
---AADAAAAMAAAAAM

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Dataset #: 3 Motif ID: 61 Motif name: MEF2A

Original motif Reverse complement motif
Consensus sequence: CTATTTWTAG Consensus sequence: CTAWAAATAG

Best Matches for Motif ID 61 (Highest to Lowest)

Motif ID: UP00136
Motif name: Prrx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0146962

Alignment:
DDDHKCTAATTAGCHBT
---CTAWAAATAG----

Original motif Reverse complement motif
Consensus sequence: AVHGCTAATTAGYDDDD Consensus sequence: DDDHKCTAATTAGCHBT

Motif ID: UP00263
Motif name: Hoxb8
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0163693

Alignment:
HVBDGYAATTAATADW
-----CTATTTWTAG-

Original motif Reverse complement motif
Consensus sequence: HVBDGYAATTAATADW Consensus sequence: WDTATTAATTKCHBVH

Motif ID: UP00077
Motif name: Srf_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0166836

Alignment:
HHCCWTATAWGGHA
--CTATTTWTAG--

Original motif Reverse complement motif
Consensus sequence: HHCCWTATAWGGHA Consensus sequence: THCCWTATAWGGHH

Motif ID: UP00207
Motif name: Hoxb9
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0172097

Alignment:
HDHHTTTTATRGCKMV
--CTATTTWTAG----

Original motif Reverse complement motif
Consensus sequence: VRRGCMATAAAAHHHD Consensus sequence: HDHHTTTTATRGCKMV

Motif ID: UP00131
Motif name: Gbx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0183254

Alignment:
DVDVKCTAATTAGMVVD
---CTAWAAATAG----

Original motif Reverse complement motif
Consensus sequence: DVVRCTAATTAGYVDBD Consensus sequence: DVDVKCTAATTAGMVVD

Dataset #: 3 Motif ID: 62 Motif name: TBP

Original motif Reverse complement motif
Consensus sequence: STATAAAWRVVVVBV Consensus sequence: VBVVVVMWTTTATAS

Best Matches for Motif ID 62 (Highest to Lowest)

Motif ID: UP00263
Motif name: Hoxb8
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0516869

Alignment:
HVBDGYAATTAATADW
VBVVVVMWTTTATAS-

Original motif Reverse complement motif
Consensus sequence: HVBDGYAATTAATADW Consensus sequence: WDTATTAATTKCHBVH

Motif ID: UP00064
Motif name: Sox18_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0558243

Alignment:
DBVBTRAATTYADDHV
VBVVVVMWTTTATAS-

Original motif Reverse complement motif
Consensus sequence: DBVBTRAATTYADDHV Consensus sequence: VDHDTKAATTMABBBH

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.056942

Alignment:
BDHDDADAGATAAGADHBDHVD
-------STATAAAWRVVVVBV

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0584978

Alignment:
VCTBHBVCTTGGWTACVVVVVDB
-VBVVVVMWTTTATAS-------

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Motif ID: UP00126
Motif name: Dlx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0596962

Alignment:
VVDRTAATTABHHHAB
-STATAAAWRVVVVBV

Original motif Reverse complement motif
Consensus sequence: VVDRTAATTABHHHAB Consensus sequence: BTDHHBTAATTAKDVV

Dataset #: 3 Motif ID: 63 Motif name: FOXL1

Original motif Reverse complement motif
Consensus sequence: WHDAHATA Consensus sequence: TATDTDHW

Best Matches for Motif ID 63 (Highest to Lowest)

Motif ID: UP00070
Motif name: Gcm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0187381

Alignment:
DDBVHATAGGGGRBRMB
WHDAHATA---------

Original motif Reverse complement motif
Consensus sequence: DDBVHATAGGGGRBRMB Consensus sequence: BYMBKCCCCTATDVBHD

Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 8
Similarity score: 0.0275803

Alignment:
HDHHTTTTATTKKHDD
-------TATDTDHW-

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD

Motif ID: UP00059
Motif name: Arid5a_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0289039

Alignment:
VYAATATTGVDADH
----TATDTDHW--

Original motif Reverse complement motif
Consensus sequence: VYAATATTGVDADH Consensus sequence: HDTDVCAATATTMV

Motif ID: UP00059
Motif name: Arid5a_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 8
Similarity score: 0.0298407

Alignment:
BDYDVAATACGADDBVV
-WHDAHATA--------

Original motif Reverse complement motif
Consensus sequence: BDYDVAATACGADDBVV Consensus sequence: BBVDDTCGTATTVDMHB

Motif ID: UP00154
Motif name: Dlx3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0298907

Alignment:
BHVVDATAATTACMVHH
WHDAHATA---------

Original motif Reverse complement motif
Consensus sequence: BHVVDATAATTACMVHH Consensus sequence: DHVRGTAATTATHVVDV

Dataset #: 3 Motif ID: 64 Motif name: ARID3A

Original motif Reverse complement motif
Consensus sequence: ATYAAA Consensus sequence: TTTMAT

Best Matches for Motif ID 64 (Highest to Lowest)

Motif ID: UP00212
Motif name: Lhx5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0

Alignment:
VDHATTAATTAAAWHHB
-------ATYAAA----

Original motif Reverse complement motif
Consensus sequence: VDHATTAATTAAAWHHB Consensus sequence: VDHWTTTAATTAATHHV

Motif ID: UP00130
Motif name: Lhx3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.00146194

Alignment:
VDAATTAATTAAWWHHB
-------ATYAAA----

Original motif Reverse complement motif
Consensus sequence: VDAATTAATTAAWWHHB Consensus sequence: VHHWWTTAATTAATTDV

Motif ID: UP00169
Motif name: Lmx1b
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.00211796

Alignment:
BHDATTAATTAAWWWHB
-------ATYAAA----

Original motif Reverse complement motif
Consensus sequence: VDWWWTTAATTAATDHB Consensus sequence: BHDATTAATTAAWWWHB

Motif ID: UP00213
Motif name: Hoxa9
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.00270371

Alignment:
WDTAWTTTWATGKCCGD
-----TTTMAT------

Original motif Reverse complement motif
Consensus sequence: DCGGYCATWAAAWTADW Consensus sequence: WDTAWTTTWATGKCCGD

Motif ID: UP00188
Motif name: Lmx1a
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.00429494

Alignment:
BDWWWTTAATTAAHHVG
----TTTMAT-------

Original motif Reverse complement motif
Consensus sequence: CVHHTTAATTAAWWWHB Consensus sequence: BDWWWTTAATTAAHHVG

Dataset #: 3 Motif ID: 65 Motif name: Foxd3

Original motif Reverse complement motif
Consensus sequence: GAWTGTTTDTTT Consensus sequence: AAAHAAACAWTC

Best Matches for Motif ID 65 (Highest to Lowest)

Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0199939

Alignment:
HHHTTRTTDTTTKDH
-GAWTGTTTDTTT--

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH

Motif ID: UP00025
Motif name: Foxk1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.0284901

Alignment:
HDDTGTTKTTKTHHD
GAWTGTTTDTTT---

Original motif Reverse complement motif
Consensus sequence: HHHAYAAYAACAHHH Consensus sequence: HDDTGTTKTTKTHHD

Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0300632

Alignment:
DBTHHAAAAAAAAVHDH
-----AAAHAAACAWTC

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 12
Similarity score: 0.030621

Alignment:
VBDDAAAAAAAAMVBHH
-----AAAHAAACAWTC

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00073
Motif name: Foxa2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0336182

Alignment:
VVDAATAACAAAVVB
-AAAHAAACAWTC--

Original motif Reverse complement motif
Consensus sequence: VVDAATAACAAAVVB Consensus sequence: BVVTTTGTTATTDBB

Dataset #: 3 Motif ID: 66 Motif name: Lhx3

Original motif Reverse complement motif
Consensus sequence: WAATTAATTAWYB Consensus sequence: BMWTAATTAATTW

Best Matches for Motif ID 66 (Highest to Lowest)

Motif ID: UP00158
Motif name: Pou1f1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0

Alignment:
BDHDTAATTAATTADBH
-BMWTAATTAATTW---

Original motif Reverse complement motif
Consensus sequence: DVDTAATTAATTADDDB Consensus sequence: BDHDTAATTAATTADBH

Motif ID: UP00105
Motif name: Pou3f4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.00121383

Alignment:
DVHTAATTAATTADDDB
---WAATTAATTAWYB-

Original motif Reverse complement motif
Consensus sequence: DVHTAATTAATTADDDB Consensus sequence: BDDDTAATTAATTAHBD

Motif ID: UP00129
Motif name: Pou3f1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.00257587

Alignment:
DVBTAATTAATTAABTH
---WAATTAATTAWYB-

Original motif Reverse complement motif
Consensus sequence: DVBTAATTAATTAABTH Consensus sequence: DAVTTAATTAATTAVBD

Motif ID: UP00200
Motif name: Nkx6-1_2825.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.00504022

Alignment:
DVHAATTAATTAMYBBG
--WAATTAATTAWYB--

Original motif Reverse complement motif
Consensus sequence: DVHAATTAATTAMYBBG Consensus sequence: CBVMRTAATTAATTHBH

Motif ID: UP00128
Motif name: Pou3f2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0101975

Alignment:
VDDAATTAATTARBDHD
--WAATTAATTAWYB--

Original motif Reverse complement motif
Consensus sequence: VDDAATTAATTARBDHD Consensus sequence: HHDVMTAATTAATTDDV

Dataset #: 3 Motif ID: 67 Motif name: FOXI1

Original motif Reverse complement motif
Consensus sequence: KBDTRTTTRTTT Consensus sequence: AAAMAAAMADBY

Best Matches for Motif ID 67 (Highest to Lowest)

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.0179427

Alignment:
VBDDAAAAAAAAMVBHH
----AAAMAAAMADBY-

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Motif ID: UP00090
Motif name: Elf3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0239728

Alignment:
DDHBTTTTTTTTHDAVH
-----AAAMAAAMADBY

Original motif Reverse complement motif
Consensus sequence: DBTHHAAAAAAAAVHDH Consensus sequence: DDHBTTTTTTTTHDAVH

Motif ID: UP00025
Motif name: Foxk1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0256298

Alignment:
HDDTGTTKTTKTHHD
KBDTRTTTRTTT---

Original motif Reverse complement motif
Consensus sequence: HHHAYAAYAACAHHH Consensus sequence: HDDTGTTKTTKTHHD

Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0259593

Alignment:
BDVTTTKTTTACWTWHH
--KBDTRTTTRTTT---

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH

Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0264881

Alignment:
HHHTTRTTDTTTKDH
-KBDTRTTTRTTT--

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH

Dataset #: 3 Motif ID: 68 Motif name: HNF1A

Original motif Reverse complement motif
Consensus sequence: GGTTAATDATTAMC Consensus sequence: GYTAATDATTAACC

Best Matches for Motif ID 68 (Highest to Lowest)

Motif ID: UP00196
Motif name: Hoxa4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0302874

Alignment:
CVRGTTAATTAATHADH
--GGTTAATDATTAMC-

Original motif Reverse complement motif
Consensus sequence: DDTHATTAATTAACKBG Consensus sequence: CVRGTTAATTAATHADH

Motif ID: UP00144
Motif name: Hoxb4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0326031

Alignment:
CVHRTTAATTAATHAHH
--GGTTAATDATTAMC-

Original motif Reverse complement motif
Consensus sequence: CVHRTTAATTAATHAHH Consensus sequence: DDTHATTAATTAAMDVG

Motif ID: UP00237
Motif name: Otp
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0337345

Alignment:
VVHDRTTAATTAAYDDG
-GYTAATDATTAACC--

Original motif Reverse complement motif
Consensus sequence: VVHDRTTAATTAAYDDG Consensus sequence: CHDMTTAATTAAKDHVV

Motif ID: UP00164
Motif name: Hoxa7_2668.2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0338854

Alignment:
GBDDAHTAATTADHHVV
-GYTAATDATTAACC--

Original motif Reverse complement motif
Consensus sequence: VVHDDTAATTAHTDDBC Consensus sequence: GBDDAHTAATTADHHVV

Motif ID: UP00141
Motif name: Vsx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0357442

Alignment:
VHTDHTTAATTAAMHVG
-GYTAATDATTAACC--

Original motif Reverse complement motif
Consensus sequence: CVHRTTAATTAAHDAHB Consensus sequence: VHTDHTTAATTAAMHVG

Dataset #: 3 Motif ID: 69 Motif name: NKX3-1

Original motif Reverse complement motif
Consensus sequence: ATACTTA Consensus sequence: TAAGTAT

Best Matches for Motif ID 69 (Highest to Lowest)

Motif ID: UP00154
Motif name: Dlx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0

Alignment:
DHVRGTAATTATHVVDV
-----TAAGTAT-----

Original motif Reverse complement motif
Consensus sequence: BHVVDATAATTACMVHH Consensus sequence: DHVRGTAATTATHVVDV

Motif ID: UP00110
Motif name: Dlx4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.000606776

Alignment:
GHVRGTAATTATDVVGV
-----TAAGTAT-----

Original motif Reverse complement motif
Consensus sequence: BCVVDATAATTACMVHC Consensus sequence: GHVRGTAATTATDVVGV

Motif ID: UP00108
Motif name: Alx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 7
Similarity score: 0.00319583

Alignment:
VHVAKMTAATTAKTHBW
------TAAGTAT----

Original motif Reverse complement motif
Consensus sequence: WVHAYTAATTARYTVHV Consensus sequence: VHVAKMTAATTAKTHBW

Motif ID: UP00202
Motif name: Dlx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.00693044

Alignment:
BHGVRDTAATTADY
-----ATACTTA--

Original motif Reverse complement motif
Consensus sequence: BHGVRDTAATTADY Consensus sequence: MDTAATTAHMBCHB

Motif ID: UP00214
Motif name: Hoxb5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.00733424

Alignment:
HTDHGVTAATTABCVT
------TAAGTAT---

Original motif Reverse complement motif
Consensus sequence: AVGBTAATTAVCHHAH Consensus sequence: HTDHGVTAATTABCVT

Dataset #: 3 Motif ID: 70 Motif name: Foxq1

Original motif Reverse complement motif
Consensus sequence: HATTGTTTATW Consensus sequence: WATAAACAATH

Best Matches for Motif ID 70 (Highest to Lowest)

Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0

Alignment:
HDHRTAAACAAAHDDD
--WATAAACAATH---

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH

Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0026812

Alignment:
HDHADGTAAACAAAVVH
----WATAAACAATH--

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.00280369

Alignment:
DWAATRTAAACAAWVVB
----WATAAACAATH--

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.00419331

Alignment:
DDAATGTAAACAAAVVB
----WATAAACAATH--

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD

Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.00439236

Alignment:
HHWAWGTAAAYAAAVDB
----WATAAACAATH--

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH

Dataset #: 3 Motif ID: 71 Motif name: Evi1

Original motif Reverse complement motif
Consensus sequence: AAGAYAAGATAABA Consensus sequence: TBTTATCTTMTCTT

Best Matches for Motif ID 71 (Highest to Lowest)

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 14
Similarity score: 0

Alignment:
BDHDDADAGATAAGADHBDHVD
------AAGAYAAGATAABA--

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00170
Motif name: Isl2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0312075

Alignment:
HWDTTAATYKMTTHHR
-TBTTATCTTMTCTT-

Original motif Reverse complement motif
Consensus sequence: MHHAAYYMATTAADWH Consensus sequence: HWDTTAATYKMTTHHR

Motif ID: UP00145
Motif name: Barhl2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.0314743

Alignment:
HAMAAHCAATTAABHH
-AAGAYAAGATAABA-

Original motif Reverse complement motif
Consensus sequence: HAMAAHCAATTAABHH Consensus sequence: HHBTTAATTGDTTYTH

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0322547

Alignment:
HDDDATTTTATTKVRDB
TBTTATCTTMTCTT---

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB

Motif ID: UP00032
Motif name: Gata3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 14
Similarity score: 0.0325491

Alignment:
HHHBBMGATAVHATCWVVDHVH
----AAGAYAAGATAABA----

Original motif Reverse complement motif
Consensus sequence: HBHDVBWGATHBTATCRVBHHH Consensus sequence: HHHBBMGATAVHATCWVVDHVH

Dataset #: 3 Motif ID: 72 Motif name: Nkx2-5

Original motif Reverse complement motif
Consensus sequence: WTAAKTG Consensus sequence: CARTTAW

Best Matches for Motif ID 72 (Highest to Lowest)

Motif ID: UP00166
Motif name: Barhl1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 7
Similarity score: 0

Alignment:
DDVKTAATTGGTTDTH
---WTAAKTG------

Original motif Reverse complement motif
Consensus sequence: HAHAACCAATTARBDH Consensus sequence: DDVKTAATTGGTTDTH

Motif ID: UP00237
Motif name: Otp
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 7
Similarity score: 0.00115905

Alignment:
VVHDRTTAATTAAYDDG
--CARTTAW--------

Original motif Reverse complement motif
Consensus sequence: VVHDRTTAATTAAYDDG Consensus sequence: CHDMTTAATTAAKDHVV

Motif ID: UP00263
Motif name: Hoxb8
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.00141056

Alignment:
WDTATTAATTKCHBVH
----WTAAKTG-----

Original motif Reverse complement motif
Consensus sequence: HVBDGYAATTAATADW Consensus sequence: WDTATTAATTKCHBVH

Motif ID: UP00170
Motif name: Isl2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.00307472

Alignment:
MHHAAYYMATTAADWH
------CARTTAW---

Original motif Reverse complement motif
Consensus sequence: MHHAAYYMATTAADWH Consensus sequence: HWDTTAATYKMTTHHR

Motif ID: UP00244
Motif name: Tlx2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0.00343945

Alignment:
BAATHAATTAATAAHWW
----CARTTAW------

Original motif Reverse complement motif
Consensus sequence: BAATHAATTAATAAHWW Consensus sequence: WWDTTATTAATTHATTV

Dataset #: 3 Motif ID: 73 Motif name: SRY

Original motif Reverse complement motif
Consensus sequence: BDWAACAAT Consensus sequence: ATTGTTWDB

Best Matches for Motif ID 73 (Highest to Lowest)

Motif ID: UP00075
Motif name: Sox15_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 9
Similarity score: 0

Alignment:
HDDDDAACAATWRRBHD
--BDWAACAAT------

Original motif Reverse complement motif
Consensus sequence: HDDDDAACAATWRRBHD Consensus sequence: DHVKMWATTGTTHDHDH

Motif ID: UP00014
Motif name: Sox17_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 9
Similarity score: 0.00043275

Alignment:
DDWTBAATTGTTDDB
------ATTGTTWDB

Original motif Reverse complement motif
Consensus sequence: VDDAACAATTVAWHD Consensus sequence: DDWTBAATTGTTDDB

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 9
Similarity score: 0.00666345

Alignment:
HHBDHDDAACAATDRHHHHHBW
----BDWAACAAT---------

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00051
Motif name: Sox8_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 9
Similarity score: 0.00942662

Alignment:
DDDHDAACAATWBATDD
--BDWAACAAT------

Original motif Reverse complement motif
Consensus sequence: DDATBWATTGTTHHDDD Consensus sequence: DDDHDAACAATWBATDD

Motif ID: UP00023
Motif name: Sox30_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 9
Similarity score: 0.0107093

Alignment:
HHHHMHATTGTTBDHD
------ATTGTTWDB-

Original motif Reverse complement motif
Consensus sequence: DHDBAACAATDRHHHH Consensus sequence: HHHHMHATTGTTBDHD

Dataset #: 3 Motif ID: 74 Motif name: FOXC1

Original motif Reverse complement motif
Consensus sequence: VBHVHGTA Consensus sequence: TACHBHBV

Best Matches for Motif ID 74 (Highest to Lowest)

Motif ID: UP00209
Motif name: Cart1_1275.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 8
Similarity score: 0.0185694

Alignment:
VHHVVTTAATTAADRVB
VBHVHGTA---------

Original motif Reverse complement motif
Consensus sequence: BVMDTTAATTAABBDDV Consensus sequence: VHHVVTTAATTAADRVB

Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0207969

Alignment:
DVVTTTGTTTACDTHDH
---------TACHBHBV

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH

Motif ID: UP00187
Motif name: Alx4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 10
Number of overlap: 8
Similarity score: 0.0208745

Alignment:
BVHHVKTAATTAMDDCG
VBHVHGTA---------

Original motif Reverse complement motif
Consensus sequence: CGHDYTAATTARBHHVB Consensus sequence: BVHHVKTAATTAMDDCG

Motif ID: UP00257
Motif name: Shox2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 8
Similarity score: 0.0213263

Alignment:
BDVVDKTAATTAMVDHV
VBHVHGTA---------

Original motif Reverse complement motif
Consensus sequence: VDHVYTAATTARDBVDB Consensus sequence: BDVVDKTAATTAMVDHV

Motif ID: UP00088
Motif name: Plagl1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 8
Similarity score: 0.0227422

Alignment:
DHDDGGTACCCCCCHBH
---------TACHBHBV

Original motif Reverse complement motif
Consensus sequence: DBHGGGGGGTACCHHHD Consensus sequence: DHDDGGTACCCCCCHBH

Dataset #: 3 Motif ID: 75 Motif name: FOXF2

Original motif Reverse complement motif
Consensus sequence: BHADSGTAAACAAD Consensus sequence: DTTGTTTACSBTBB

Best Matches for Motif ID 75 (Highest to Lowest)

Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 14
Similarity score: 0

Alignment:
DVVTTTGTTTACDTHDH
---DTTGTTTACSBTBB

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH

Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.00393584

Alignment:
BBVTTTGTTTACATTDD
---DTTGTTTACSBTBB

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0108917

Alignment:
DWAATRTAAACAAWVVB
BHADSGTAAACAAD---

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0118559

Alignment:
BDVTTTKTTTACWTWHH
---DTTGTTTACSBTBB

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH

Motif ID: UP00012
Motif name: Bbx_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0389436

Alignment:
HVWHBGTTAACABHBDV
BHADSGTAAACAAD---

Original motif Reverse complement motif
Consensus sequence: HVWHBGTTAACABHBDV Consensus sequence: VHVHBTGTTAACVHWVH

Dataset #: 3 Motif ID: 76 Motif name: Sox2

Original motif Reverse complement motif
Consensus sequence: CCWTTGTYATGCAAA Consensus sequence: TTTGCATMACAAWGG

Best Matches for Motif ID 76 (Highest to Lowest)

Motif ID: UP00039
Motif name: Foxj3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0330532

Alignment:
HDBAHCAWAACADWDVD
-TTTGCATMACAAWGG-

Original motif Reverse complement motif
Consensus sequence: HDBAHCAWAACADWDVD Consensus sequence: DVHWDTGTTWTGDTBDH

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0360255

Alignment:
HHBDHDDAACAATDRHHHHHBW
TTTGCATMACAAWGG-------

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0392872

Alignment:
ADDDYAWAACAAMAHH
-CCWTTGTYATGCAAA

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT

Motif ID: UP00041
Motif name: Foxj1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.046424

Alignment:
HBVBCAYAACAABVH
TTTGCATMACAAWGG

Original motif Reverse complement motif
Consensus sequence: HBVBCAYAACAABVH Consensus sequence: DBBTTGTTKTGVVVH

Motif ID: UP00077
Motif name: Srf_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 15
Similarity score: 0.0469262

Alignment:
HHVBYTTTTTTTTDDVV
--CCWTTGTYATGCAAA

Original motif Reverse complement motif
Consensus sequence: VBDDAAAAAAAAMVBHH Consensus sequence: HHVBYTTTTTTTTDDVV

Dataset #: 3 Motif ID: 77 Motif name: Sox5

Original motif Reverse complement motif
Consensus sequence: HAACAAT Consensus sequence: ATTGTTH

Best Matches for Motif ID 77 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 7
Similarity score: 0

Alignment:
WBHHHHHMDATTGTTHDHDVHH
---------ATTGTTH------

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00101
Motif name: Sox12_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00575637

Alignment:
THATTGTTVTHAWH
--ATTGTTH-----

Original motif Reverse complement motif
Consensus sequence: THATTGTTVTHAWH Consensus sequence: DWTHAVAACAATHA

Motif ID: UP00064
Motif name: Sox18_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.00689336

Alignment:
HHDHABAACAATHBWV
-----HAACAAT----

Original motif Reverse complement motif
Consensus sequence: BWBHATTGTTBTHDHH Consensus sequence: HHDHABAACAATHBWV

Motif ID: UP00075
Motif name: Sox15_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 7
Similarity score: 0.00793479

Alignment:
DHVKMWATTGTTHDHDH
------ATTGTTH----

Original motif Reverse complement motif
Consensus sequence: HDDDDAACAATWRRBHD Consensus sequence: DHVKMWATTGTTHDHDH

Motif ID: UP00091
Motif name: Sox5_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 7
Similarity score: 0.00811912

Alignment:
DHDDWATTGTTCDDHD
-----ATTGTTH----

Original motif Reverse complement motif
Consensus sequence: DHDDGAACAATWDDHD Consensus sequence: DHDDWATTGTTCDDHD

Dataset #: 3 Motif ID: 78 Motif name: RORA_1

Original motif Reverse complement motif
Consensus sequence: AWVDAGGTCA Consensus sequence: TGACCTDVWT

Best Matches for Motif ID 78 (Highest to Lowest)

Motif ID: UP00009
Motif name: Nr2f2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0154749

Alignment:
DHBHAAAGGTCAHVHB
--AWVDAGGTCA----

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCAHVHB Consensus sequence: BHVDTGACCTTTDVDD

Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0176661

Alignment:
HHBVHTGACCTTGVDHD
-----TGACCTDVWT--

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD

Motif ID: UP00048
Motif name: Rara
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0189599

Alignment:
DHBHAAAGGTCACVHD
--AWVDAGGTCA----

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCACVHD Consensus sequence: HHVGTGACCTTTDVDD

Motif ID: UP00009
Motif name: Nr2f2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.0331999

Alignment:
VBVBCSGGGTCAVBBH
--AWVDAGGTCA----

Original motif Reverse complement motif
Consensus sequence: VBVBCSGGGTCAVBBH Consensus sequence: HVBVTGACCCSGBVBV

Motif ID: UP00066
Motif name: Hnf4a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0341771

Alignment:
BDBVMGGGGTCAABHDV
--AWVDAGGTCA-----

Original motif Reverse complement motif
Consensus sequence: BDBVMGGGGTCAABHDV Consensus sequence: BHHVTTGACCCCYVVDB

Dataset #: 3 Motif ID: 79 Motif name: Prrx2

Original motif Reverse complement motif
Consensus sequence: AATTA Consensus sequence: TAATT

Best Matches for Motif ID 79 (Highest to Lowest)

Motif ID: UP00264
Motif name: Hoxa1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 5
Similarity score: 0

Alignment:
HTDAGCTAATTAMHBY
-------AATTA----

Original motif Reverse complement motif
Consensus sequence: HTDAGCTAATTAMHBY Consensus sequence: MBDRTAATTAGCTHAD

Motif ID: UP00145
Motif name: Barhl2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 5
Similarity score: 4.33852e-05

Alignment:
HHBTTAATTGDTTYTH
----TAATT-------

Original motif Reverse complement motif
Consensus sequence: HAMAAHCAATTAABHH Consensus sequence: HHBTTAATTGDTTYTH

Motif ID: UP00132
Motif name: Evx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 5
Similarity score: 0.000403033

Alignment:
WRBGCTAATTAGCRGBB
------AATTA------

Original motif Reverse complement motif
Consensus sequence: BVCMGCTAATTAGCBKW Consensus sequence: WRBGCTAATTAGCRGBB

Motif ID: UP00167
Motif name: En1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 5
Similarity score: 0.000612413

Alignment:
VHRKTAATTAGTTVVV
----TAATT-------

Original motif Reverse complement motif
Consensus sequence: VVVAACTAATTARKDV Consensus sequence: VHRKTAATTAGTTVVV

Motif ID: UP00171
Motif name: Msx3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 5
Similarity score: 0.000838245

Alignment:
VAHAACYAATTAABHH
-------AATTA----

Original motif Reverse complement motif
Consensus sequence: VAHAACYAATTAABHH Consensus sequence: HHVTTAATTKGTTHTV

Dataset #: 3 Motif ID: 80 Motif name: Pou5f1

Original motif Reverse complement motif
Consensus sequence: CWTTGTHATGCAAAT Consensus sequence: ATTTGCATHACAAWG

Best Matches for Motif ID 80 (Highest to Lowest)

Motif ID: UP00039
Motif name: Foxj3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0376287

Alignment:
HDBAHCAWAACADWDVD
ATTTGCATHACAAWG--

Original motif Reverse complement motif
Consensus sequence: HDBAHCAWAACADWDVD Consensus sequence: DVHWDTGTTWTGDTBDH

Motif ID: UP00150
Motif name: Irx6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0420168

Alignment:
AHWDBTACATGTADHTH
-CWTTGTHATGCAAAT-

Original motif Reverse complement motif
Consensus sequence: HAHDTACATGTAVDWHT Consensus sequence: AHWDBTACATGTADHTH

Motif ID: UP00194
Motif name: Irx4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0420967

Alignment:
DBTWTWACATGTWDHDW
-CWTTGTHATGCAAAT-

Original motif Reverse complement motif
Consensus sequence: WDHDWACATGTWAWABD Consensus sequence: DBTWTWACATGTWDHDW

Motif ID: UP00098
Motif name: Rfx3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 15
Similarity score: 0.0432112

Alignment:
BDBBVBVGTAWCCAAGVBHBAGB
-ATTTGCATHACAAWG-------

Original motif Reverse complement motif
Consensus sequence: VCTBHBVCTTGGWTACVVVVVDB Consensus sequence: BDBBVBVGTAWCCAAGVBHBAGB

Motif ID: UP00250
Motif name: Irx5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0474325

Alignment:
WVTDHWACATGTWHDDD
-CWTTGTHATGCAAAT-

Original motif Reverse complement motif
Consensus sequence: DDDHWACATGTWHDABW Consensus sequence: WVTDHWACATGTWHDDD

Dataset #: 3 Motif ID: 81 Motif name: Pax4

Original motif Reverse complement motif
Consensus sequence: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM

Best Matches for Motif ID 81 (Highest to Lowest)

Motif ID: UP00540
Motif name: Gli3_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 23
Similarity score: 0.0506561

Alignment:
-------VYWVVHCRCCACMCACGAHSBHH
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC

Original motif Reverse complement motif
Consensus sequence: VYWVVHCRCCACMCACGAHSBHH Consensus sequence: HHBSHTCGTGRGTGGKGDBVWMV

Motif ID: UP00538
Motif name: Gli1_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 23
Similarity score: 0.0526364

Alignment:
-------MHHHWHYTMCCHCCCACVAABVH
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC------

Original motif Reverse complement motif
Consensus sequence: MHHHWHYTMCCHCCCACVAABVH Consensus sequence: DVVTTVGTGGGHGGYAMHWHHHY

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 23
Similarity score: 0.0547526

Alignment:
-------HVBDAGCGBGGGTGGCRDBDDDB
RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 23
Similarity score: 0.0550408

Alignment:
BADHBDHCGCCCMCGCAHHDBBV-------
---RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00528
Motif name: Foxm1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 23
Similarity score: 0.0559551

Alignment:
-------VHVRCAYGATGCATCDTVVADTH
GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM---

Original motif Reverse complement motif
Consensus sequence: HADTBVADGATGCATCMTGMVHB Consensus sequence: VHVRCAYGATGCATCDTVVADTH

Dataset #: 3 Motif ID: 82 Motif name: HNF1B

Original motif Reverse complement motif
Consensus sequence: TTAATRWTTAAC Consensus sequence: GTTAAWKATTAA

Best Matches for Motif ID 82 (Highest to Lowest)

Motif ID: UP00196
Motif name: Hoxa4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.00579799

Alignment:
CVRGTTAATTAATHADH
---GTTAAWKATTAA--

Original motif Reverse complement motif
Consensus sequence: DDTHATTAATTAACKBG Consensus sequence: CVRGTTAATTAATHADH

Motif ID: UP00222
Motif name: Tcf2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 12
Similarity score: 0.0172357

Alignment:
ABDBCTAGTTAACVBBD
-TTAATRWTTAAC----

Original motif Reverse complement motif
Consensus sequence: DBBBGTTAACTAGBHBT Consensus sequence: ABDBCTAGTTAACVBBD

Motif ID: UP00237
Motif name: Otp
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0183959

Alignment:
VVHDRTTAATTAAYDDG
--TTAATRWTTAAC---

Original motif Reverse complement motif
Consensus sequence: VVHDRTTAATTAAYDDG Consensus sequence: CHDMTTAATTAAKDHVV

Motif ID: UP00144
Motif name: Hoxb4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.0185132

Alignment:
DDTHATTAATTAAMDVG
--TTAATRWTTAAC---

Original motif Reverse complement motif
Consensus sequence: CVHRTTAATTAATHAHH Consensus sequence: DDTHATTAATTAAMDVG

Motif ID: UP00141
Motif name: Vsx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0190281

Alignment:
CVHRTTAATTAAHDAHB
---GTTAAWKATTAA--

Original motif Reverse complement motif
Consensus sequence: CVHRTTAATTAAHDAHB Consensus sequence: VHTDHTTAATTAAMHVG

Dataset #: 3 Motif ID: 83 Motif name: NR2F1

Original motif Reverse complement motif
Consensus sequence: TGAMCTTTGMMCYT Consensus sequence: AKGYYCAAAGRTCA

Best Matches for Motif ID 83 (Highest to Lowest)

Motif ID: UP00083
Motif name: Tcf7l2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0452364

Alignment:
DDDYCCTTTGATSTDDV
-TGAMCTTTGMMCYT--

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATSTDDV Consensus sequence: BDDASATCAAAGGMDDD

Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0453449

Alignment:
VDDAGATCAAAGGKDDD
--AKGYYCAAAGRTCA-

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD

Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 14
Similarity score: 0.0461358

Alignment:
DVMHHDHKGACCCTCCTSVCBH
-------TGAMCTTTGMMCYT-

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH

Motif ID: UP00054
Motif name: Tcf7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0461768

Alignment:
BHHASATCAAAGGAHHH
--AKGYYCAAAGRTCA-

Original motif Reverse complement motif
Consensus sequence: BHHASATCAAAGGAHHH Consensus sequence: HHHTCCTTTGATSTHHV

Motif ID: UP00058
Motif name: Tcf3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.0473628

Alignment:
HHHASATCAAAGVRHHH
--AKGYYCAAAGRTCA-

Original motif Reverse complement motif
Consensus sequence: HHHASATCAAAGVRHHH Consensus sequence: HHHKVCTTTGATSTHHH

Dataset #: 3 Motif ID: 84 Motif name: NR1H2RXRA

Original motif Reverse complement motif
Consensus sequence: AAAGGTCAAAGGTCAAC Consensus sequence: GTTGACCTTTGACCTTT

Best Matches for Motif ID 84 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0538452

Alignment:
DVMHHDHKGACCCTCCTSVCBH
-----GTTGACCTTTGACCTTT

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 17
Similarity score: 0.0545098

Alignment:
BDHDDADAGATAAGADHBDHVD
-----AAAGGTCAAAGGTCAAC

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00067
Motif name: Lef1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.521114

Alignment:
VDDAGATCAAAGGKDDD-
-AAAGGTCAAAGGTCAAC

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATCTDDV Consensus sequence: VDDAGATCAAAGGKDDD

Motif ID: UP00083
Motif name: Tcf7l2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.527825

Alignment:
BDDASATCAAAGGMDDD-
-GTTGACCTTTGACCTTT

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATSTDDV Consensus sequence: BDDASATCAAAGGMDDD

Motif ID: UP00054
Motif name: Tcf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.531154

Alignment:
BHHASATCAAAGGAHHH-
-AAAGGTCAAAGGTCAAC

Original motif Reverse complement motif
Consensus sequence: BHHASATCAAAGGAHHH Consensus sequence: HHHTCCTTTGATSTHHV

Dataset #: 3 Motif ID: 85 Motif name: Nobox

Original motif Reverse complement motif
Consensus sequence: TAATTRSY Consensus sequence: MSMAATTA

Best Matches for Motif ID 85 (Highest to Lowest)

Motif ID: UP00181
Motif name: Barx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0

Alignment:
MHRVYAATTRSYDHAW
----TAATTRSY----

Original motif Reverse complement motif
Consensus sequence: MHRVYAATTRSYDHAW Consensus sequence: WTHHMSKAATTMVKHY

Motif ID: UP00124
Motif name: Ipf1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.000478222

Alignment:
VVRBTAATTAGYHCAD
----TAATTRSY----

Original motif Reverse complement motif
Consensus sequence: VVRBTAATTAGYHCAD Consensus sequence: DTGHKCTAATTABMBB

Motif ID: UP00166
Motif name: Barhl1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 8
Similarity score: 0.00170663

Alignment:
HAHAACCAATTARBDH
----MSMAATTA----

Original motif Reverse complement motif
Consensus sequence: HAHAACCAATTARBDH Consensus sequence: DDVKTAATTGGTTDTH

Motif ID: UP00129
Motif name: Pou3f1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 8
Similarity score: 0.00260091

Alignment:
DAVTTAATTAATTAVBD
--------TAATTRSY-

Original motif Reverse complement motif
Consensus sequence: DVBTAATTAATTAABTH Consensus sequence: DAVTTAATTAATTAVBD

Motif ID: UP00200
Motif name: Nkx6-1_2825.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 8
Similarity score: 0.00284029

Alignment:
DVHAATTAATTAMYBBG
------TAATTRSY---

Original motif Reverse complement motif
Consensus sequence: DVHAATTAATTAMYBBG Consensus sequence: CBVMRTAATTAATTHBH

Dataset #: 3 Motif ID: 86 Motif name: FOXO3

Original motif Reverse complement motif
Consensus sequence: KGTAAACA Consensus sequence: TGTTTACR

Best Matches for Motif ID 86 (Highest to Lowest)

Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 8
Similarity score: 0

Alignment:
BBVTTTGTTTACATTDD
-----TGTTTACR----

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.00864258

Alignment:
DWAATRTAAACAAWVVB
----KGTAAACA-----

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 8
Similarity score: 0.0124177

Alignment:
HDHADGTAAACAAAVVH
----KGTAAACA-----

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH

Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.0130125

Alignment:
HHWAWGTAAAYAAAVDB
----KGTAAACA-----

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH

Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0166678

Alignment:
HDHRTAAACAAAHDDD
--KGTAAACA------

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH

Dataset #: 3 Motif ID: 87 Motif name: SOX9

Original motif Reverse complement motif
Consensus sequence: DAACAATRG Consensus sequence: CMATTGTTH

Best Matches for Motif ID 87 (Highest to Lowest)

Motif ID: UP00034
Motif name: Sox7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 9
Similarity score: 0

Alignment:
HHBDHDDAACAATDRHHHHHBW
------DAACAATRG-------

Original motif Reverse complement motif
Consensus sequence: HHBDHDDAACAATDRHHHHHBW Consensus sequence: WBHHHHHMDATTGTTHDHDVHH

Motif ID: UP00023
Motif name: Sox30_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 9
Similarity score: 0.00334802

Alignment:
DHDBAACAATDRHHHH
---DAACAATRG----

Original motif Reverse complement motif
Consensus sequence: DHDBAACAATDRHHHH Consensus sequence: HHHHMHATTGTTBDHD

Motif ID: UP00064
Motif name: Sox18_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 9
Similarity score: 0.00846463

Alignment:
BWBHATTGTTBTHDHH
--CMATTGTTH-----

Original motif Reverse complement motif
Consensus sequence: BWBHATTGTTBTHDHH Consensus sequence: HHDHABAACAATHBWV

Motif ID: UP00051
Motif name: Sox8_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 9
Similarity score: 0.00854664

Alignment:
DDATBWATTGTTHHDDD
----CMATTGTTH----

Original motif Reverse complement motif
Consensus sequence: DDATBWATTGTTHHDDD Consensus sequence: DDDHDAACAATWBATDD

Motif ID: UP00016
Motif name: Sry_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 9
Similarity score: 0.00857614

Alignment:
HHDHDRAACAATDDVHV
-----DAACAATRG---

Original motif Reverse complement motif
Consensus sequence: HHDHDRAACAATDDVHV Consensus sequence: VHVHDATTGTTMHDDDH

Dataset #: 4 Motif ID: 88 Motif name: ygCTyTTCsg

Original motif Reverse complement motif
Consensus sequence: HDCTYTTCGB Consensus sequence: BCGAAMAGHH

Best Matches for Motif ID 88 (Highest to Lowest)

Motif ID: UP00100
Motif name: Gata6_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0

Alignment:
DHDVDWGATAAGADDHV
----BCGAAMAGHH---

Original motif Reverse complement motif
Consensus sequence: DHDVDWGATAAGADDHV Consensus sequence: VHDDTCTTATCWHBDHD

Motif ID: UP00080
Motif name: Gata5_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.00162374

Alignment:
DDHBKCTTATCAGDDDH
---HDCTYTTCGB----

Original motif Reverse complement motif
Consensus sequence: HDDDCTGATAAGRVDDD Consensus sequence: DDHBKCTTATCAGDDDH

Motif ID: UP00422
Motif name: Etv3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.00476259

Alignment:
VBBHAYTTCCGGTHDH
-HDCTYTTCGB-----

Original motif Reverse complement motif
Consensus sequence: VBBHAYTTCCGGTHDH Consensus sequence: DHHACCGGAAKTHBBB

Motif ID: UP00032
Motif name: Gata3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 10
Similarity score: 0.00596836

Alignment:
BDHDDADAGATAAGADHBDHVD
------BCGAAMAGHH------

Original motif Reverse complement motif
Consensus sequence: BDHDDADAGATAAGADHBDHVD Consensus sequence: HBHDVHDTCTTATCTHTDDHDV

Motif ID: UP00018
Motif name: Irf4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.00611579

Alignment:
VDDAYCGAAACYDVA
----BCGAAMAGHH-

Original motif Reverse complement motif
Consensus sequence: VDDAYCGAAACYDVA Consensus sequence: TBDKGTTTCGMTDHV

Dataset #: 4 Motif ID: 89 Motif name: aaACAAAACaa

Original motif Reverse complement motif
Consensus sequence: AAACAAAACHV Consensus sequence: BHGTTTTGTTT

Best Matches for Motif ID 89 (Highest to Lowest)

Motif ID: UP00040
Motif name: Irf5_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0

Alignment:
BDKGTTTCGKTWDDD
-BHGTTTTGTTT---

Original motif Reverse complement motif
Consensus sequence: DDDWAYCGAAACYDV Consensus sequence: BDKGTTTCGKTWDDD

Motif ID: UP00039
Motif name: Foxj3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.00609972

Alignment:
DVHWDTGTTWTGDTBDH
----BHGTTTTGTTT--

Original motif Reverse complement motif
Consensus sequence: HDBAHCAWAACADWDVD Consensus sequence: DVHWDTGTTWTGDTBDH

Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.00979154

Alignment:
HBDDDAACAAAGRVBHH
----AAACAAAACHV--

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH

Motif ID: UP00018
Motif name: Irf4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.0107372

Alignment:
TBDKGTTTCGMTDHV
--BHGTTTTGTTT--

Original motif Reverse complement motif
Consensus sequence: VDDAYCGAAACYDVA Consensus sequence: TBDKGTTTCGMTDHV

Motif ID: UP00074
Motif name: Isgf3g_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0120963

Alignment:
VDRAAWCGAAACTDA
---AAACAAAACHV-

Original motif Reverse complement motif
Consensus sequence: VDRAAWCGAAACTDA Consensus sequence: TDAGTTTCGWTTKDV

Dataset #: 4 Motif ID: 90 Motif name: ymTACATAyw

Original motif Reverse complement motif
Consensus sequence: HHTACATABD Consensus sequence: DBTATGTAHH

Best Matches for Motif ID 90 (Highest to Lowest)

Motif ID: UP00223
Motif name: Irx3_2226.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.0125176

Alignment:
DDDHTACATGTAVWDHD
--HHTACATABD-----

Original motif Reverse complement motif
Consensus sequence: DDDHTACATGTAVWDHD Consensus sequence: DHDWBTACATGTAHDDD

Motif ID: UP00250
Motif name: Irx5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0128452

Alignment:
DDDHWACATGTWHDABW
--HHTACATABD-----

Original motif Reverse complement motif
Consensus sequence: DDDHWACATGTWHDABW Consensus sequence: WVTDHWACATGTWHDDD

Motif ID: UP00223
Motif name: Irx3_0920.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.0136843

Alignment:
DDDDTACATGTAVWWHD
--HHTACATABD-----

Original motif Reverse complement motif
Consensus sequence: DDDDTACATGTAVWWHD Consensus sequence: DDWWBTACATGTADDDD

Motif ID: UP00236
Motif name: Irx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.0146278

Alignment:
WDDDTACATGTADDWBW
--HHTACATABD-----

Original motif Reverse complement motif
Consensus sequence: WDDDTACATGTADDWBW Consensus sequence: WVWDDTACATGTADDDW

Motif ID: UP00150
Motif name: Irx6
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0149892

Alignment:
HAHDTACATGTAVDWHT
--HHTACATABD-----

Original motif Reverse complement motif
Consensus sequence: HAHDTACATGTAVDWHT Consensus sequence: AHWDBTACATGTADHTH

Dataset #: 4 Motif ID: 91 Motif name: wtATTTTAww

Original motif Reverse complement motif
Consensus sequence: DHATTTTAWH Consensus sequence: HWTAAAATHD

Best Matches for Motif ID 91 (Highest to Lowest)

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0

Alignment:
HDDDATTTTATTKVRDB
--DHATTTTAWH-----

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB

Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.000602623

Alignment:
HDHHTTTTATTKKHDD
-DHATTTTAWH-----

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD

Motif ID: UP00134
Motif name: Hoxb13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.00330603

Alignment:
VDHWTTTTATTGGDKB
-DHATTTTAWH-----

Original motif Reverse complement motif
Consensus sequence: VRHCCAATAAAAWHHV Consensus sequence: VDHWTTTTATTGGDKB

Motif ID: UP00207
Motif name: Hoxb9
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0112406

Alignment:
VRRGCMATAAAAHHHD
-----HWTAAAATHD-

Original motif Reverse complement motif
Consensus sequence: VRRGCMATAAAAHHHD Consensus sequence: HDHHTTTTATRGCKMV

Motif ID: UP00213
Motif name: Hoxa9
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0133155

Alignment:
DCGGYCATWAAAWTADW
-----HWTAAAATHD--

Original motif Reverse complement motif
Consensus sequence: DCGGYCATWAAAWTADW Consensus sequence: WDTAWTTTWATGKCCGD

Dataset #: 4 Motif ID: 92 Motif name: cgAKGyCAcg

Original motif Reverse complement motif
Consensus sequence: CGAGGYCACV Consensus sequence: VGTGMCCTCG

Best Matches for Motif ID 92 (Highest to Lowest)

Motif ID: UP00048
Motif name: Rara
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0

Alignment:
DHBHAAAGGTCACVHD
----CGAGGYCACV--

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCACVHD Consensus sequence: HHVGTGACCTTTDVDD

Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.000849165

Alignment:
DHDBCAAGGTCAHVBDH
----CGAGGYCACV---

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD

Motif ID: UP00009
Motif name: Nr2f2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.00374211

Alignment:
DHBHAAAGGTCAHVHB
----CGAGGYCACV--

Original motif Reverse complement motif
Consensus sequence: DHBHAAAGGTCAHVHB Consensus sequence: BHVDTGACCTTTDVDD

Motif ID: UP00053
Motif name: Rxra_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.00411192

Alignment:
DBHBDTGACCCCDHVHB
---VGTGMCCTCG----

Original motif Reverse complement motif
Consensus sequence: DBHBDTGACCCCDHVHB Consensus sequence: VHBHDGGGGTCAHBHBD

Motif ID: UP00009
Motif name: Nr2f2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.00498268

Alignment:
VBVBCSGGGTCAVBBH
----CGAGGYCACV--

Original motif Reverse complement motif
Consensus sequence: VBVBCSGGGTCAVBBH Consensus sequence: HVBVTGACCCSGBVBV

Dataset #: 4 Motif ID: 93 Motif name: cmCARCACTwr

Original motif Reverse complement motif
Consensus sequence: BHCAGCACTHV Consensus sequence: VHAGTGCTGHB

Best Matches for Motif ID 93 (Highest to Lowest)

Motif ID: UP00095
Motif name: Zfp691_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0

Alignment:
BDHVCAGTGCTCMBHDD
---VHAGTGCTGHB---

Original motif Reverse complement motif
Consensus sequence: BDHVCAGTGCTCMBHDD Consensus sequence: DDHBYGAGCACTGBHHB

Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0156406

Alignment:
HHDCVCAGCAKGVVD
---BHCAGCACTHV-

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD

Motif ID: UP00102
Motif name: Zic1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.0168051

Alignment:
BHDCVCAGCAGGHVD
---BHCAGCACTHV-

Original motif Reverse complement motif
Consensus sequence: BHDCVCAGCAGGHVD Consensus sequence: DVHCCTGCTGBGDDB

Motif ID: UP00185
Motif name: Pbx1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.017137

Alignment:
BVDWHWTTGATGRKTKH
---VHAGTGCTGHB---

Original motif Reverse complement motif
Consensus sequence: HYAYMCATCAAWHWDVV Consensus sequence: BVDWHWTTGATGRKTKH

Motif ID: UP00231
Motif name: Nkx2-2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.0178374

Alignment:
DVDTKTCAAGTGGKBDH
------VHAGTGCTGHB

Original motif Reverse complement motif
Consensus sequence: HDVRCCACTTGARADBD Consensus sequence: DVDTKTCAAGTGGKBDH

Dataset #: 4 Motif ID: 94 Motif name: yrTCWCAAyr

Original motif Reverse complement motif
Consensus sequence: HVTCACAAYD Consensus sequence: HKTTGTGABH

Best Matches for Motif ID 94 (Highest to Lowest)

Motif ID: UP00004
Motif name: Sox14_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.00180568

Alignment:
BBDCMATTGTSTBRB
----HKTTGTGABH-

Original motif Reverse complement motif
Consensus sequence: BKBASACAATRGHBB Consensus sequence: BBDCMATTGTSTBRB

Motif ID: UP00041
Motif name: Foxj1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.00349348

Alignment:
HBVBCAYAACAABVH
-HVTCACAAYD----

Original motif Reverse complement motif
Consensus sequence: HBVBCAYAACAABVH Consensus sequence: DBBTTGTTKTGVVVH

Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.00703247

Alignment:
HHBBMCTTTGTTHDDBH
-----HKTTGTGABH--

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH

Motif ID: UP00069
Motif name: Sox1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.00766951

Alignment:
HBDTAATTGTTABBV
----HKTTGTGABH-

Original motif Reverse complement motif
Consensus sequence: HBDTAATTGTTABBV Consensus sequence: VBVTAACAATTADVD

Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.00853696

Alignment:
HHBTMCTTTGTTMDDVH
-----HKTTGTGABH--

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH

Dataset #: 4 Motif ID: 95 Motif name: rmATGCTAww

Original motif Reverse complement motif
Consensus sequence: DHATGCTADH Consensus sequence: HDTAGCATHD

Best Matches for Motif ID 95 (Highest to Lowest)

Motif ID: UP00035
Motif name: Hic1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.000392414

Alignment:
DDBHGGTTGGCATVBD
-----HDTAGCATHD-

Original motif Reverse complement motif
Consensus sequence: DBBATGCCAACCHVHH Consensus sequence: DDBHGGTTGGCATVBD

Motif ID: UP00038
Motif name: Spdef_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.00185687

Alignment:
DDBHACATCCTAKWDV
----DHATGCTADH--

Original motif Reverse complement motif
Consensus sequence: DDBHACATCCTAKWDV Consensus sequence: VDWYTAGGATGTHVDH

Motif ID: UP00528
Motif name: Foxm1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 8
Number of overlap: 10
Similarity score: 0.00415297

Alignment:
MWSMBAARRATGCDCABHATGD
-------DHATGCTADH-----

Original motif Reverse complement motif
Consensus sequence: MWSMBAARRATGCDCABHATGD Consensus sequence: DCATDBTGHGCATKMTTBRSWR

Motif ID: UP00191
Motif name: Pou2f2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.00662149

Alignment:
BHDTATGCAAATDHDV
--DHATGCTADH----

Original motif Reverse complement motif
Consensus sequence: BHDTATGCAAATDHDV Consensus sequence: BHHDATTTGCATAHHV

Motif ID: UP00179
Motif name: Pou2f3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.00719542

Alignment:
BHDTATGCAAATBHDV
--DHATGCTADH----

Original motif Reverse complement motif
Consensus sequence: BHDTATGCAAATBHDV Consensus sequence: BHHVATTTGCATAHHV

Dataset #: 4 Motif ID: 96 Motif name: mdAAcCAACG

Original motif Reverse complement motif
Consensus sequence: VDAACCAACG Consensus sequence: CGTTGGTTDB

Best Matches for Motif ID 96 (Highest to Lowest)

Motif ID: UP00227
Motif name: Duxl
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.00355394

Alignment:
VHVVGTTGATTGGGTMK
---CGTTGGTTDB----

Original motif Reverse complement motif
Consensus sequence: YRACCCAATCAACVVHV Consensus sequence: VHVVGTTGATTGGGTMK

Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.00855132

Alignment:
HBDDRAACAAAGRABHH
--VDAACCAACG-----

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH

Motif ID: UP00145
Motif name: Barhl2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0107325

Alignment:
HAMAAHCAATTAABHH
-VDAACCAACG-----

Original motif Reverse complement motif
Consensus sequence: HAMAAHCAATTAABHH Consensus sequence: HHBTTAATTGDTTYTH

Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0110249

Alignment:
HBDDDAACAAAGRVBHH
--VDAACCAACG-----

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH

Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0135248

Alignment:
HHHTTRTTDTTTKDH
----CGTTGGTTDB-

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH

Dataset #: 4 Motif ID: 97 Motif name: sgArGCCACg

Original motif Reverse complement motif
Consensus sequence: SGARGCCACG Consensus sequence: CGTGGCKTCS

Best Matches for Motif ID 97 (Highest to Lowest)

Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 7
Number of overlap: 10
Similarity score: 0

Alignment:
DBBVDDDRTRGCGTCBBYTHGA
------CGTGGCKTCS------

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD

Motif ID: UP00538
Motif name: Gli1_v016060_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.016953

Alignment:
BDDHVDKGCCACCCVCGCTDBVH
---SGARGCCACG----------

Original motif Reverse complement motif
Consensus sequence: HVBDAGCGBGGGTGGCRDBDDDB Consensus sequence: BDDHVDKGCCACCCVCGCTDBVH

Motif ID: UP00035
Motif name: Hic1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0201376

Alignment:
DBBATGCCAACCHVHH
-SGARGCCACG-----

Original motif Reverse complement motif
Consensus sequence: DBBATGCCAACCHVHH Consensus sequence: DDBHGGTTGGCATVBD

Motif ID: UP00538
Motif name: Gli1_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 10
Similarity score: 0.0208219

Alignment:
BBBDVVRGACCACCCAVGABBAB
----SGARGCCACG---------

Original motif Reverse complement motif
Consensus sequence: BBBDVVRGACCACCCAVGABBAB Consensus sequence: BTBVTCVTGGGTGGTCMVVDVBB

Motif ID: UP00540
Motif name: Gli3_v015681_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.0214164

Alignment:
ABBBBVVRGACCACCCACRDBBM
-----SGARGCCACG--------

Original motif Reverse complement motif
Consensus sequence: ABBBBVVRGACCACCCACRDBBM Consensus sequence: YBVDMGTGGGTGGTCKVVBVBBT

Dataset #: 4 Motif ID: 98 Motif name: myyCCCACmTGCmyr

Original motif Reverse complement motif
Consensus sequence: HBCCCCACMTGCMHV Consensus sequence: VDRGCAYGTGGGGVD

Best Matches for Motif ID 98 (Highest to Lowest)

Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 15
Similarity score: 0.0181868

Alignment:
HHVBABCACGTGSTHD
VDRGCAYGTGGGGVD-

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD

Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 15
Similarity score: 0.0230607

Alignment:
RDHDBVDTCACGTGASBHVHDH
----VDRGCAYGTGGGGVD---

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM

Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 15
Similarity score: 0.0256209

Alignment:
DHDBHGCACCTGBDDVB
-HBCCCCACMTGCMHV-

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB

Motif ID: UP00400
Motif name: Zif268
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 15
Similarity score: 0.0266663

Alignment:
BADHBDHCGCCCMCGCAHHDBBV
----HBCCCCACMTGCMHV----

Original motif Reverse complement motif
Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB

Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 15
Similarity score: 0.0272039

Alignment:
BBYVVCAGCTGCBVHHD
HBCCCCACMTGCMHV--

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB

Dataset #: 4 Motif ID: 99 Motif name: graGGGGGArr

Original motif Reverse complement motif
Consensus sequence: DVAGGGGGADD Consensus sequence: HDTCCCCCTVH

Best Matches for Motif ID 99 (Highest to Lowest)

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.00603636

Alignment:
BHHDYGGGGGGGGBVD
--DVAGGGGGADD---

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0076747

Alignment:
BVVHAGGGGGCGRDHHB
--DVAGGGGGADD----

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Motif ID: UP00047
Motif name: Zbtb7b_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 11
Similarity score: 0.00819591

Alignment:
DDVCCCCCCHAAWHB
-HDTCCCCCTVH---

Original motif Reverse complement motif
Consensus sequence: DDVCCCCCCHAAWHB Consensus sequence: VHWTTHGGGGGGVDD

Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.00976403

Alignment:
BBHBGAGTGGGAHHDB
---DVAGGGGGADD--

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV

Motif ID: UP00021
Motif name: Zfp281_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0106708

Alignment:
DKKWDACCCCCAHTDDV
---HDTCCCCCTVH---

Original motif Reverse complement motif
Consensus sequence: DKKWDACCCCCAHTDDV Consensus sequence: VDDAHTGGGGGTHWYYD

Dataset #: 4 Motif ID: 100 Motif name: wwTAATAAww

Original motif Reverse complement motif
Consensus sequence: DHTAATAADD Consensus sequence: DDTTATTAHD

Best Matches for Motif ID 100 (Highest to Lowest)

Motif ID: UP00202
Motif name: Dlx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0

Alignment:
BHGVRDTAATTADY
----DHTAATAADD

Original motif Reverse complement motif
Consensus sequence: BHGVRDTAATTADY Consensus sequence: MDTAATTAHMBCHB

Motif ID: UP00254
Motif name: Pou2f1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.00229164

Alignment:
WABKTAATTAHKHHHD
--DDTTATTAHD----

Original motif Reverse complement motif
Consensus sequence: DHDHRHTAATTARBTW Consensus sequence: WABKTAATTAHKHHHD

Motif ID: UP00242
Motif name: Hoxc8
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.00454573

Alignment:
BHDDDGTAATTAHHDT
----DHTAATAADD--

Original motif Reverse complement motif
Consensus sequence: BHDDDGTAATTAHHDT Consensus sequence: AHDHTAATTACHHHHV

Motif ID: UP00164
Motif name: Hoxa7_2668.2
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.00628744

Alignment:
VVHDDTAATTAHTDDBC
---DDTTATTAHD----

Original motif Reverse complement motif
Consensus sequence: VVHDDTAATTAHTDDBC Consensus sequence: GBDDAHTAATTADHHVV

Motif ID: UP00188
Motif name: Lmx1a
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.00687588

Alignment:
BDWWWTTAATTAAHHVG
----DDTTATTAHD---

Original motif Reverse complement motif
Consensus sequence: CVHHTTAATTAAWWWHB Consensus sequence: BDWWWTTAATTAAHHVG

Dataset #: 4 Motif ID: 101 Motif name: csCACCCCgg

Original motif Reverse complement motif
Consensus sequence: HVCACCCCBB Consensus sequence: BBGGGGTGVD

Best Matches for Motif ID 101 (Highest to Lowest)

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0

Alignment:
HBBBCCGCCCCWHHHV
---HVCACCCCBB---

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.00537553

Alignment:
HHHHDGGGGCGGDBHDV
---BBGGGGTGVD----

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.00656484

Alignment:
BHHDYGGGGGGGGBVD
---BBGGGGTGVD---

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00047
Motif name: Zbtb7b_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.007042

Alignment:
VHWTTHGGGGGGVDD
----BBGGGGTGVD-

Original motif Reverse complement motif
Consensus sequence: DDVCCCCCCHAAWHB Consensus sequence: VHWTTHGGGGGGVDD

Motif ID: UP00022
Motif name: Zfp740_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.00824602

Alignment:
HVKDCCGGGGGGWADDD
----BBGGGGTGVD---

Original motif Reverse complement motif
Consensus sequence: DDDTWCCCCCCGGDRVH Consensus sequence: HVKDCCGGGGGGWADDD

Dataset #: 4 Motif ID: 102 Motif name: ssCkGGYCCCsg

Original motif Reverse complement motif
Consensus sequence: BBCKGGCCCCVV Consensus sequence: VVGGGGCCRGBB

Best Matches for Motif ID 102 (Highest to Lowest)

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0169484

Alignment:
HHHHDGGGGCGGDBHDV
---VVGGGGCCRGBB--

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0175288

Alignment:
BHHHWGGGGCGGBBVH
---VVGGGGCCRGBB-

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH

Motif ID: UP00002
Motif name: Sp4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 12
Similarity score: 0.0227378

Alignment:
BVVHAGGGGGCGRDHHB
----VVGGGGCCRGBB-

Original motif Reverse complement motif
Consensus sequence: BDHHMCGCCCCCTHVBB Consensus sequence: BVVHAGGGGGCGRDHHB

Motif ID: UP00003
Motif name: E2F3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0249423

Alignment:
BBBDYTGGCGCCKWDBD
--BBCKGGCCCCVV---

Original motif Reverse complement motif
Consensus sequence: HBHWYGGCGCCAMDVBB Consensus sequence: BBBDYTGGCGCCKWDBD

Motif ID: UP00088
Motif name: Plagl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.0253681

Alignment:
BHDGGGGSSCCCCBVV
-BBCKGGCCCCVV---

Original motif Reverse complement motif
Consensus sequence: BHDGGGGSSCCCCBVV Consensus sequence: VBVGGGGSSCCCCHHV

Dataset #: 4 Motif ID: 103 Motif name: csCCaGCTCCCgs

Original motif Reverse complement motif
Consensus sequence: BBCCAGCTCCCVB Consensus sequence: BVGGGAGCTGGBB

Best Matches for Motif ID 103 (Highest to Lowest)

Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 13
Similarity score: 0.0202226

Alignment:
BBYVVCAGCTGCBVHHD
--BBCCAGCTCCCVB--

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0208734

Alignment:
DBCCCCCCCCCCMYC
-BBCCAGCTCCCVB-

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00081
Motif name: Mybl1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.0210344

Alignment:
BHCGGCAGTTGGBBB
-BVGGGAGCTGGBB-

Original motif Reverse complement motif
Consensus sequence: BBVCCAACTGCCGHB Consensus sequence: BHCGGCAGTTGGBBB

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0215827

Alignment:
BHHHWGGGGCGGBBVH
--BVGGGAGCTGGBB-

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 13
Similarity score: 0.0226705

Alignment:
HHHHDGGGGCGGDBHDV
--BVGGGAGCTGGBB--

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Dataset #: 4 Motif ID: 104 Motif name: cgCCCwGGScsg

Original motif Reverse complement motif
Consensus sequence: VDCCCWGGGCBB Consensus sequence: BBGCCCWGGGHV

Best Matches for Motif ID 104 (Highest to Lowest)

Motif ID: UP00057
Motif name: Zic2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0278909

Alignment:
BMCCCCCGGGGGGGB
--VDCCCWGGGCBB-

Original motif Reverse complement motif
Consensus sequence: BMCCCCCGGGGGGGB Consensus sequence: VCCCCCCCGGGGGRB

Motif ID: UP00006
Motif name: Zic3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0289126

Alignment:
BMCCCCCGGGGGGGB
--VDCCCWGGGCBB-

Original motif Reverse complement motif
Consensus sequence: BMCCCCCGGGGGGGB Consensus sequence: VCCCCCCCGGGGGRB

Motif ID: UP00102
Motif name: Zic1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.029683

Alignment:
CCCCCCCGGGGGHB
--VDCCCWGGGCBB

Original motif Reverse complement motif
Consensus sequence: BHCCCCCGGGGGGG Consensus sequence: CCCCCCCGGGGGHB

Motif ID: UP00028
Motif name: Tcfap2e_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0336763

Alignment:
HHHGCCTSAGGCDAD
-BBGCCCWGGGHV--

Original motif Reverse complement motif
Consensus sequence: HHHGCCTSAGGCDAD Consensus sequence: DTHGCCTSAGGCHHH

Motif ID: UP00087
Motif name: Tcfap2c_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0349474

Alignment:
WHHSCCYSRGGSDAD
-BBGCCCWGGGHV--

Original motif Reverse complement motif
Consensus sequence: WHHSCCYSRGGSDAD Consensus sequence: DTHSCCKSMGGSHHW

Dataset #: 4 Motif ID: 105 Motif name: ccGCAGCCss

Original motif Reverse complement motif
Consensus sequence: VCGCAGCCBB Consensus sequence: BBGGCTGCGV

Best Matches for Motif ID 105 (Highest to Lowest)

Motif ID: UP00036
Motif name: Myf6_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.010084

Alignment:
GGDGBGVCTGTKVVB
---BBGGCTGCGV--

Original motif Reverse complement motif
Consensus sequence: VVVRACAGVCBCDCC Consensus sequence: GGDGBGVCTGTKVVB

Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.0132463

Alignment:
BHBHDTGGCGGGGBDHD
----BBGGCTGCGV---

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD

Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.0166617

Alignment:
HHDVVGCAGCTGVBKVB
---VCGCAGCCBB----

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB

Motif ID: UP00057
Motif name: Zic2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.0227026

Alignment:
DVBCYTGCTGBGDDD
---BBGGCTGCGV--

Original motif Reverse complement motif
Consensus sequence: HHDCVCAGCAKGVVD Consensus sequence: DVBCYTGCTGBGDDD

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 9
Number of overlap: 10
Similarity score: 0.0228762

Alignment:
VDWDARRGACGCGGWHGGAKHV
----BBGGCTGCGV--------

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Dataset #: 4 Motif ID: 106 Motif name: wtAATTAAtw

Original motif Reverse complement motif
Consensus sequence: DTAATTAATH Consensus sequence: HATTAATTAD

Best Matches for Motif ID 106 (Highest to Lowest)

Motif ID: UP00262
Motif name: Lhx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0

Alignment:
BHTWWTTAATTAATDVV
-----DTAATTAATH--

Original motif Reverse complement motif
Consensus sequence: VVDATTAATTAAWWAHB Consensus sequence: BHTWWTTAATTAATDVV

Motif ID: UP00169
Motif name: Lmx1b
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.00156097

Alignment:
BHDATTAATTAAWWWHB
--HATTAATTAD-----

Original motif Reverse complement motif
Consensus sequence: VDWWWTTAATTAATDHB Consensus sequence: BHDATTAATTAAWWWHB

Motif ID: UP00196
Motif name: Hoxa4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.00196821

Alignment:
CVRGTTAATTAATHADH
----DTAATTAATH---

Original motif Reverse complement motif
Consensus sequence: DDTHATTAATTAACKBG Consensus sequence: CVRGTTAATTAATHADH

Motif ID: UP00238
Motif name: Nkx6-3
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.00207435

Alignment:
BVVAVTAATTAATWHBH
----DTAATTAATH---

Original motif Reverse complement motif
Consensus sequence: DVHWATTAATTAVTBBB Consensus sequence: BVVAVTAATTAATWHBH

Motif ID: UP00200
Motif name: Nkx6-1_2825.1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 10
Similarity score: 0.00251648

Alignment:
CBVMRTAATTAATTHBH
----DTAATTAATH---

Original motif Reverse complement motif
Consensus sequence: DVHAATTAATTAMYBBG Consensus sequence: CBVMRTAATTAATTHBH

Dataset #: 4 Motif ID: 107 Motif name: crCGyGCRcg

Original motif Reverse complement motif
Consensus sequence: CGCGTGCACG Consensus sequence: CGTGCACGCG

Best Matches for Motif ID 107 (Highest to Lowest)

Motif ID: UP00065
Motif name: Zfp161_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0

Alignment:
DDGCGCGCGCRCHYRD
---CGCGTGCACG---

Original motif Reverse complement motif
Consensus sequence: DDGCGCGCGCRCHYRD Consensus sequence: DMMDGMGCGCGCGCHD

Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 10
Similarity score: 0.0113553

Alignment:
DDRMHBACGCGYGCGTDGBBDB
-------CGCGTGCACG-----

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD

Motif ID: UP00526
Motif name: Foxn1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 10
Similarity score: 0.0247731

Alignment:
WHVBVVMACGCGCGTCDYHWDH
------CGCGTGCACG------

Original motif Reverse complement motif
Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Consensus sequence: HDWHMHGACGCGCGTRBVVBHW

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 10
Number of overlap: 10
Similarity score: 0.0252308

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
---------CGCGTGCACG----

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM

Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.025406

Alignment:
DHVDTGTGCACAYAHDH
--CGCGTGCACG-----

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD

Dataset #: 4 Motif ID: 108 Motif name: wwATkTTTAww

Original motif Reverse complement motif
Consensus sequence: DHATKTTTAHH Consensus sequence: HHTAAARATHD

Best Matches for Motif ID 108 (Highest to Lowest)

Motif ID: UP00073
Motif name: Foxa2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0

Alignment:
BDVTTTKTTTACWTWHH
--DHATKTTTAHH----

Original motif Reverse complement motif
Consensus sequence: HHWAWGTAAAYAAAVDB Consensus sequence: BDVTTTKTTTACWTWHH

Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 3.90279e-05

Alignment:
VVVWTTGTTTAMATTWD
--DHATKTTTAHH----

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD

Motif ID: UP00039
Motif name: Foxj3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.00301688

Alignment:
DVVTTTGTTTACDTHDH
--DHATKTTTAHH----

Original motif Reverse complement motif
Consensus sequence: HDHADGTAAACAAAVVH Consensus sequence: DVVTTTGTTTACDTHDH

Motif ID: UP00025
Motif name: Foxk1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.00639823

Alignment:
BBVTTTGTTTACATTDD
--DHATKTTTAHH----

Original motif Reverse complement motif
Consensus sequence: DDAATGTAAACAAAVVB Consensus sequence: BBVTTTGTTTACATTDD

Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.00769803

Alignment:
DDDHTTTGTTTAMHDH
---DHATKTTTAHH--

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH

Dataset #: 4 Motif ID: 109 Motif name: aaCAAAAACaa

Original motif Reverse complement motif
Consensus sequence: HHCAAAAACHH Consensus sequence: HHGTTTTTGHH

Best Matches for Motif ID 109 (Highest to Lowest)

Motif ID: UP00025
Motif name: Foxk1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0

Alignment:
HDDTGTTKTTKTHHD
--HHGTTTTTGHH--

Original motif Reverse complement motif
Consensus sequence: HHHAYAAYAACAHHH Consensus sequence: HDDTGTTKTTKTHHD

Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0170113

Alignment:
HDTYTTGTTWTKDDDT
----HHGTTTTTGHH-

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT

Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 11
Similarity score: 0.0175316

Alignment:
HDYAAAHAAMAADHD
----HHCAAAAACHH

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH

Motif ID: UP00040
Motif name: Irf5_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0176547

Alignment:
BDKGTTTCGKTWDDD
HHGTTTTTGHH----

Original motif Reverse complement motif
Consensus sequence: DDDWAYCGAAACYDV Consensus sequence: BDKGTTTCGKTWDDD

Motif ID: UP00011
Motif name: Irf6_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0176921

Alignment:
HDDAHCGAAACYAVDDD
---HHCAAAAACHH---

Original motif Reverse complement motif
Consensus sequence: HDDAHCGAAACYAVDDD Consensus sequence: DHDBTKGTTTCGHTHDD

Dataset #: 4 Motif ID: 110 Motif name: cmCCACACCcm

Original motif Reverse complement motif
Consensus sequence: HVCCACACCBV Consensus sequence: VBGGTGTGGBD

Best Matches for Motif ID 110 (Highest to Lowest)

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0

Alignment:
HBDRCCMCGCCCHHHD
--HVCCACACCBV---

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.00667141

Alignment:
BHHHWGGGGCGGBBVH
---VBGGTGTGGBD--

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH

Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.00715345

Alignment:
HVHBVTGTCTGGDDHDD
---VBGGTGTGGBD---

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD

Motif ID: UP00068
Motif name: Eomes_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.00885578

Alignment:
VVBVCKACACCTHVBV
--HVCCACACCBV---

Original motif Reverse complement motif
Consensus sequence: VBVDAGGTGTYGVBBV Consensus sequence: VVBVCKACACCTHVBV

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.00952604

Alignment:
HHHHDGGGGCGGDBHDV
---VBGGTGTGGBD---

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Dataset #: 4 Motif ID: 111 Motif name: ccCCmCaCCCCcc

Original motif Reverse complement motif
Consensus sequence: HBCCCCACCCCBH Consensus sequence: DBGGGGTGGGGBD

Best Matches for Motif ID 111 (Highest to Lowest)

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0

Alignment:
DHHDGGGCGRGGKHBH
-DBGGGGTGGGGBD--

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 13
Similarity score: 0.00295406

Alignment:
GKRGGGGGGGGGGBD
-DBGGGGTGGGGBD-

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD

Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 13
Similarity score: 0.00418721

Alignment:
HVBCCCCCCCCMHHHB
-HBCCCCACCCCBH--

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 13
Similarity score: 0.011156

Alignment:
HBBBCCGCCCCWHHHV
HBCCCCACCCCBH---

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH

Motif ID: UP00033
Motif name: Zfp410_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 13
Similarity score: 0.0148306

Alignment:
BHHBHCCGCCCCDHHHH
-HBCCCCACCCCBH---

Original motif Reverse complement motif
Consensus sequence: BHHBHCCGCCCCDHHHH Consensus sequence: HHHHDGGGGCGGDBHDV

Dataset #: 4 Motif ID: 112 Motif name: ctGAGTkTGAgg

Original motif Reverse complement motif
Consensus sequence: VBGAGTKTGADD Consensus sequence: HHTCARACTCVV

Best Matches for Motif ID 112 (Highest to Lowest)

Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0112925

Alignment:
BBHBGAGTGGGAHHDB
--VBGAGTKTGADD--

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0167722

Alignment:
HBGYGTGTGTGCVRVD
--VBGAGTKTGADD--

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD

Motif ID: UP00068
Motif name: Eomes_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.0205946

Alignment:
BVHDAGGTGTGAAAHHH
--VBGAGTKTGADD---

Original motif Reverse complement motif
Consensus sequence: BVHDAGGTGTGAAAHHH Consensus sequence: HHHTTTCACACCTDHBV

Motif ID: UP00058
Motif name: Tcf3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 12
Similarity score: 0.0208938

Alignment:
HHHKVCTTTGATSTHHH
-VBGAGTKTGADD----

Original motif Reverse complement motif
Consensus sequence: HHHASATCAAAGVRHHH Consensus sequence: HHHKVCTTTGATSTHHH

Motif ID: UP00083
Motif name: Tcf7l2_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0229548

Alignment:
BDDASATCAAAGGMDDD
----HHTCARACTCVV-

Original motif Reverse complement motif
Consensus sequence: DDDYCCTTTGATSTDDV Consensus sequence: BDDASATCAAAGGMDDD

Dataset #: 4 Motif ID: 113 Motif name: htCTGyKTCbt

Original motif Reverse complement motif
Consensus sequence: HBCTGYTTCBH Consensus sequence: HVGAAMCAGVH

Best Matches for Motif ID 113 (Highest to Lowest)

Motif ID: UP00011
Motif name: Irf6_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 9.08187e-05

Alignment:
DHDBTKGTTTCGHTHDD
--HBCTGYTTCBH----

Original motif Reverse complement motif
Consensus sequence: HDDAHCGAAACYAVDDD Consensus sequence: DHDBTKGTTTCGHTHDD

Motif ID: UP00018
Motif name: Irf4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0020112

Alignment:
VDDAYCGAAACYDVA
HBCTGYTTCBH----

Original motif Reverse complement motif
Consensus sequence: VDDAYCGAAACYDVA Consensus sequence: TBDKGTTTCGMTDHV

Motif ID: UP00028
Motif name: Tcfap2e_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.00395272

Alignment:
HDCDBRAAAAAADD
HBCTGYTTCBH---

Original motif Reverse complement motif
Consensus sequence: HDCDBRAAAAAADD Consensus sequence: DDTTTTTTMBDGDH

Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.00443293

Alignment:
DDDHTTTGTTTAMHDH
---HBCTGYTTCBH--

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH

Motif ID: UP00036
Motif name: Myf6_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 11
Similarity score: 0.00700099

Alignment:
VVDBAACAGBTGBYHB
-----HBCTGYTTCBH

Original motif Reverse complement motif
Consensus sequence: VVDBAACAGBTGBYHB Consensus sequence: BDKVCABCTGTTBDBV

Dataset #: 4 Motif ID: 114 Motif name: awAACAcAAwa

Original motif Reverse complement motif
Consensus sequence: DDAACACAADV Consensus sequence: BDTTGTGTTDD

Best Matches for Motif ID 114 (Highest to Lowest)

Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0

Alignment:
HBDDDAACAAAGRVBHH
---DDAACACAADV---

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH

Motif ID: UP00061
Motif name: Foxl1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.00187486

Alignment:
ADDDYAWAACAAMAHH
-----DDAACACAADV

Original motif Reverse complement motif
Consensus sequence: ADDDYAWAACAAMAHH Consensus sequence: HDTYTTGTTWTKDDDT

Motif ID: UP00026
Motif name: Zscan4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.00220739

Alignment:
HVHRGCACACAAHHHV
---DDAACACAADV--

Original motif Reverse complement motif
Consensus sequence: HVHRGCACACAAHHHV Consensus sequence: BHHHTTGTGTGCKHVD

Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.00510749

Alignment:
HBDDRAACAAAGRABHH
---DDAACACAADV---

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH

Motif ID: UP00039
Motif name: Foxj3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.00591125

Alignment:
DVHWDTGTTWTGDTBDH
BDTTGTGTTDD------

Original motif Reverse complement motif
Consensus sequence: HDBAHCAWAACADWDVD Consensus sequence: DVHWDTGTTWTGDTBDH

Dataset #: 4 Motif ID: 115 Motif name: ysCmAGCACwy

Original motif Reverse complement motif
Consensus sequence: HVCMAGCACHH Consensus sequence: DHGTGCTRGVH

Best Matches for Motif ID 115 (Highest to Lowest)

Motif ID: UP00095
Motif name: Zfp691_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 11
Similarity score: 0.0053489

Alignment:
DDHBYGAGCACTGBHHB
--HVCMAGCACHH----

Original motif Reverse complement motif
Consensus sequence: BDHVCAGTGCTCMBHDD Consensus sequence: DDHBYGAGCACTGBHHB

Motif ID: UP00019
Motif name: Zbtb12_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.00963065

Alignment:
BDHRBGTTCTAGATCVB
---DHGTGCTRGVH---

Original motif Reverse complement motif
Consensus sequence: BDHRBGTTCTAGATCVB Consensus sequence: BBGATCTAGAACBKHDB

Motif ID: UP00070
Motif name: Gcm1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 11
Similarity score: 0.012513

Alignment:
HVVHACCCGCATVDHD
---HVCMAGCACHH--

Original motif Reverse complement motif
Consensus sequence: HVVHACCCGCATVDHD Consensus sequence: DHDVATGCGGGTHVVH

Motif ID: UP00019
Motif name: Zbtb12_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0159596

Alignment:
DKBGTTCTAAKGHBH
-DHGTGCTRGVH---

Original motif Reverse complement motif
Consensus sequence: HVHCRTTAGAACBYD Consensus sequence: DKBGTTCTAAKGHBH

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0162796

Alignment:
HBDRCCMCGCCCHHHD
---HVCMAGCACHH--

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH

Dataset #: 4 Motif ID: 116 Motif name: dyCTGCyTCyc

Original motif Reverse complement motif
Consensus sequence: DHCTGCYTCHB Consensus sequence: BHGAKGCAGHH

Best Matches for Motif ID 116 (Highest to Lowest)

Motif ID: UP00027
Motif name: Osr1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.00304687

Alignment:
VHDHKWKGTAGCHHDK
--BHGAKGCAGHH---

Original motif Reverse complement motif
Consensus sequence: RHHHGCTACYWRHDHV Consensus sequence: VHDHKWKGTAGCHHDK

Motif ID: UP00527
Motif name: Foxn4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 11
Similarity score: 0.00310994

Alignment:
VHYTCCDWCCGCGTCMMTHWHV
------DHCTGCYTCHB-----

Original motif Reverse complement motif
Consensus sequence: VDWDARRGACGCGGWHGGAKHV Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV

Motif ID: UP00528
Motif name: Foxm1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 11
Similarity score: 0.0069793

Alignment:
HADTBVADGATGCATCMTGMVHB
------BHGAKGCAGHH------

Original motif Reverse complement motif
Consensus sequence: HADTBVADGATGCATCMTGMVHB Consensus sequence: VHVRCAYGATGCATCDTVVADTH

Motif ID: UP00527
Motif name: Foxn4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 11
Similarity score: 0.00989903

Alignment:
TCDAMVBGACGCMAKDDDVBBD
-----BHGAKGCAGHH------

Original motif Reverse complement motif
Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Consensus sequence: TCDAMVBGACGCMAKDDDVBBD

Motif ID: UP00052
Motif name: Osr2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0109065

Alignment:
VDWRKAKGTAGCHHDT
--BHGAKGCAGHH---

Original motif Reverse complement motif
Consensus sequence: AHHHGCTACYTRMWHV Consensus sequence: VDWRKAKGTAGCHHDT

Dataset #: 4 Motif ID: 117 Motif name: yaCATAYACay

Original motif Reverse complement motif
Consensus sequence: HVCATACACAH Consensus sequence: DTGTGTATGBD

Best Matches for Motif ID 117 (Highest to Lowest)

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.00146648

Alignment:
HBGYGTGTGTGCVRVD
--DTGTGTATGBD---

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD

Motif ID: UP00014
Motif name: Sox17_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.00148401

Alignment:
VHBHHCATTCATRHVDD
---HVCATACACAH---

Original motif Reverse complement motif
Consensus sequence: VHBHHCATTCATRHVDD Consensus sequence: DDBDKATGAATGHDBHV

Motif ID: UP00026
Motif name: Zscan4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.00748624

Alignment:
BHHHTTGTGTGCKHVD
--DTGTGTATGBD---

Original motif Reverse complement motif
Consensus sequence: HVHRGCACACAAHHHV Consensus sequence: BHHHTTGTGTGCKHVD

Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0111266

Alignment:
HVHBVTGTCTGGDDHDD
--DTGTGTATGBD----

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD

Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 11
Similarity score: 0.0147238

Alignment:
HDHRTAAACAAAHDDD
HVCATACACAH-----

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH

Dataset #: 4 Motif ID: 118 Motif name: yrCACATGCATGTGyr

Original motif Reverse complement motif
Consensus sequence: HVCACATGCATGTGBD Consensus sequence: DVCACATGCATGTGBH

Best Matches for Motif ID 118 (Highest to Lowest)

Motif ID: UP00014
Motif name: Sox17_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 16
Similarity score: 0.0237272

Alignment:
VHBHHCATTCATRHVDD
-HVCACATGCATGTGBD

Original motif Reverse complement motif
Consensus sequence: VHBHHCATTCATRHVDD Consensus sequence: DDBDKATGAATGHDBHV

Motif ID: UP00211
Motif name: Pou3f3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 1
Number of overlap: 16
Similarity score: 0.0311234

Alignment:
HADDTATGCATAATDDA
DVCACATGCATGTGBH-

Original motif Reverse complement motif
Consensus sequence: HADDTATGCATAATDDA Consensus sequence: TDDATTATGCATADDTH

Motif ID: UP00526
Motif name: Foxn1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 16
Similarity score: 0.0317308

Alignment:
DDRMHBACGCGYGCGTDGBBDB
-HVCACATGCATGTGBD-----

Original motif Reverse complement motif
Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Consensus sequence: BDVBCDACGCKCGCGTBHRKHD

Motif ID: UP00528
Motif name: Foxm1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 16
Similarity score: 0.0350949

Alignment:
HADTBVADGATGCATCMTGMVHB
----DVCACATGCATGTGBH---

Original motif Reverse complement motif
Consensus sequence: HADTBVADGATGCATCMTGMVHB Consensus sequence: VHVRCAYGATGCATCDTVVADTH

Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 16
Similarity score: 0.0361283

Alignment:
ACHRBHDTCCACGTGYAHHBMHM
-HVCACATGCATGTGBD------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM

Dataset #: 4 Motif ID: 119 Motif name: cbCCAGCTCmyk

Original motif Reverse complement motif
Consensus sequence: BBCCAGCTCMBD Consensus sequence: HBYGAGCTGGBB

Best Matches for Motif ID 119 (Highest to Lowest)

Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0114595

Alignment:
HHDVVGCAGCTGVBKVB
---BBCCAGCTCMBD--

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB

Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.0116283

Alignment:
DHDBCAAGGTCAHVBDH
--BBCCAGCTCMBD---

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD

Motif ID: UP00009
Motif name: Nr2f2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0162386

Alignment:
VBVBCSGGGTCAVBBH
--BBCCAGCTCMBD--

Original motif Reverse complement motif
Consensus sequence: VBVBCSGGGTCAVBBH Consensus sequence: HVBVTGACCCSGBVBV

Motif ID: UP00046
Motif name: Tcfe2a_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0168976

Alignment:
VBBDMYCATCTGVHHBH
---HBYGAGCTGGBB--

Original motif Reverse complement motif
Consensus sequence: HVDDVCAGATGKYHBBV Consensus sequence: VBBDMYCATCTGVHHBH

Motif ID: UP00007
Motif name: Egr1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0184561

Alignment:
BHHDTCCCACTCBDBV
---BBCCAGCTCMBD-

Original motif Reverse complement motif
Consensus sequence: BBHBGAGTGGGAHHDB Consensus sequence: BHHDTCCCACTCBDBV

Dataset #: 4 Motif ID: 120 Motif name: wtTTTwAAAaw

Original motif Reverse complement motif
Consensus sequence: HHTTTWAAADD Consensus sequence: DDTTTWAAAHH

Best Matches for Motif ID 120 (Highest to Lowest)

Motif ID: UP00245
Motif name: Hoxc10
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.00479174

Alignment:
VBDDTTTACGACDDDH
--DDTTTWAAAHH---

Original motif Reverse complement motif
Consensus sequence: HDDDGTCGTAAADHBB Consensus sequence: VBDDTTTACGACDDDH

Motif ID: UP00207
Motif name: Hoxb9
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.00518937

Alignment:
HDHHTTTTATRGCKMV
--HHTTTWAAADD---

Original motif Reverse complement motif
Consensus sequence: VRRGCMATAAAAHHHD Consensus sequence: HDHHTTTTATRGCKMV

Motif ID: UP00173
Motif name: Hoxc13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.00780549

Alignment:
DHWTTTTAMGAGBDHH
--HHTTTWAAADD---

Original motif Reverse complement motif
Consensus sequence: HHDBCTCRTAAAAWHD Consensus sequence: DHWTTTTAMGAGBDHH

Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.00780612

Alignment:
VDKVYAATAAAATDDDH
---HHTTTWAAADD---

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB

Motif ID: UP00235
Motif name: Hoxc11
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.00841397

Alignment:
HDHTTTTACGACDTTH
--DDTTTWAAAHH---

Original motif Reverse complement motif
Consensus sequence: HAADGTCGTAAAAHDD Consensus sequence: HDHTTTTACGACDTTH

Dataset #: 4 Motif ID: 121 Motif name: ctGAGTCATCkb

Original motif Reverse complement motif
Consensus sequence: HDGAGTCATCDB Consensus sequence: BHGATGACTCDD

Best Matches for Motif ID 121 (Highest to Lowest)

Motif ID: UP00103
Motif name: Jundm2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.00741758

Alignment:
VDKDRTGASTCAYHDH
----HDGAGTCATCDB

Original motif Reverse complement motif
Consensus sequence: VDKDRTGASTCAYHDH Consensus sequence: HDDKTGASTCAKHRDB

Motif ID: UP00080
Motif name: Gata5_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.00840436

Alignment:
VVHHWGATATCTMHBBV
---BHGATGACTCDD--

Original motif Reverse complement motif
Consensus sequence: VVBHRAGATATCWDHBB Consensus sequence: VVHHWGATATCTMHBBV

Motif ID: UP00095
Motif name: Zfp691_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0100045

Alignment:
DABBWGACTCCTHDVHV
---HDGAGTCATCDB--

Original motif Reverse complement motif
Consensus sequence: DABBWGACTCCTHDVHV Consensus sequence: VHBDDAGGAGTCWBBTD

Motif ID: UP00009
Motif name: Nr2f2_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 12
Similarity score: 0.0129913

Alignment:
HVBVTGACCCSGBVBV
BHGATGACTCDD----

Original motif Reverse complement motif
Consensus sequence: VBVBCSGGGTCAVBBH Consensus sequence: HVBVTGACCCSGBVBV

Motif ID: UP00199
Motif name: Six4
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0138031

Alignment:
BBVHVGGTGTCATHDDT
----HDGAGTCATCDB-

Original motif Reverse complement motif
Consensus sequence: ADDHATGACACCBHBBV Consensus sequence: BBVHVGGTGTCATHDDT

Dataset #: 4 Motif ID: 122 Motif name: hsCCAGGCCTGGsr

Original motif Reverse complement motif
Consensus sequence: HVCCAGGCCTGGBD Consensus sequence: HBCCAGGCCTGGVD

Best Matches for Motif ID 122 (Highest to Lowest)

Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 1
Number of overlap: 14
Similarity score: 0.0176735

Alignment:
HDHDDCCAGACABBHVH
HVCCAGGCCTGGBD---

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD

Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0267861

Alignment:
HHBVHTGACCTTGVDHD
-HVCCAGGCCTGGBD--

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD

Motif ID: UP00043
Motif name: Bcl6b_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.0286506

Alignment:
BHHHWGGGGCGGBBVH
HBCCAGGCCTGGVD--

Original motif Reverse complement motif
Consensus sequence: HBBBCCGCCCCWHHHV Consensus sequence: BHHHWGGGGCGGBBVH

Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 14
Similarity score: 0.030173

Alignment:
BHBHDTGGCGGGGBDHD
-HBCCAGGCCTGGVD--

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD

Motif ID: UP00046
Motif name: Tcfe2a_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.0304555

Alignment:
VBHHVCAGGTGCDVDHD
--HVCCAGGCCTGGBD-

Original motif Reverse complement motif
Consensus sequence: VBHHVCAGGTGCDVDHD Consensus sequence: DHDBHGCACCTGBDDVB

Dataset #: 4 Motif ID: 123 Motif name: asMAAGCTTKst

Original motif Reverse complement motif
Consensus sequence: HBCAAGCTTGVD Consensus sequence: DVCAAGCTTGBH

Best Matches for Motif ID 123 (Highest to Lowest)

Motif ID: UP00079
Motif name: Esrra_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.0208125

Alignment:
DHDBCAAGGTCAHVBDH
--DVCAAGCTTGBH---

Original motif Reverse complement motif
Consensus sequence: DHDBCAAGGTCAHVBDH Consensus sequence: HHBVHTGACCTTGVDHD

Motif ID: UP00092
Motif name: Myb_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0336071

Alignment:
DHHHTAACGGTTHHHDH
---HBCAAGCTTGVD--

Original motif Reverse complement motif
Consensus sequence: HDDDHAACCGTTAHHHD Consensus sequence: DHHHTAACGGTTHHHDH

Motif ID: UP00002
Motif name: Sp4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 12
Similarity score: 0.0348053

Alignment:
HHDGBCACGCCTWDB
---HBCAAGCTTGVD

Original motif Reverse complement motif
Consensus sequence: BDWAGGCGTGBCHHD Consensus sequence: HHDGBCACGCCTWDB

Motif ID: UP00053
Motif name: Rxra_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0350725

Alignment:
KCVCRWAGKTYRBDHD
--DVCAAGCTTGBH--

Original motif Reverse complement motif
Consensus sequence: KCVCRWAGKTYRBDHD Consensus sequence: DDDVMMAYCTWMGVGR

Motif ID: UP00081
Motif name: Mybl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 12
Similarity score: 0.0350753

Alignment:
DHHHTAACGGTTHDHDH
---HBCAAGCTTGVD--

Original motif Reverse complement motif
Consensus sequence: HDDDHAACCGTTAHHHD Consensus sequence: DHHHTAACGGTTHDHDH

Dataset #: 4 Motif ID: 124 Motif name: cswGGGCCCwsg

Original motif Reverse complement motif
Consensus sequence: VVWGGGCCCWBB Consensus sequence: BBWGGGCCCWVV

Best Matches for Motif ID 124 (Highest to Lowest)

Motif ID: UP00539
Motif name: Gli2_v015681_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 12
Similarity score: 0.00677789

Alignment:
HVGVSAGGAGGGTCYHHHHYVH
------VVWGGGCCCWBB----

Original motif Reverse complement motif
Consensus sequence: HVGVSAGGAGGGTCYHHHHYVH Consensus sequence: DVMHHDHKGACCCTCCTSVCBH

Motif ID: UP00035
Motif name: Hic1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.00883058

Alignment:
VHHDWTGGGCAMDHBH
---VVWGGGCCCWBB-

Original motif Reverse complement motif
Consensus sequence: DBDDRTGCCCAWDHDV Consensus sequence: VHHDWTGGGCAMDHBH

Motif ID: UP00079
Motif name: Esrra_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0135862

Alignment:
VKBBAGGGGTCAHDBBH
--VVWGGGCCCWBB---

Original motif Reverse complement motif
Consensus sequence: VKBBAGGGGTCAHDBBH Consensus sequence: DBBHHTGACCCCTBBYV

Motif ID: UP00088
Motif name: Plagl1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 12
Similarity score: 0.0139879

Alignment:
BHDGGGGSSCCCCBVV
-BBWGGGCCCWVV---

Original motif Reverse complement motif
Consensus sequence: BHDGGGGSSCCCCBVV Consensus sequence: VBVGGGGSSCCCCHHV

Motif ID: UP00093
Motif name: Klf7_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0179108

Alignment:
DHDTHGGGCGTATBHBB
--VVWGGGCCCWBB---

Original motif Reverse complement motif
Consensus sequence: VVDBATACGCCCHAHHD Consensus sequence: DHDTHGGGCGTATBHBB

Dataset #: 4 Motif ID: 125 Motif name: wwTAATwwATTAww

Original motif Reverse complement motif
Consensus sequence: DDTAATWWATTAHH Consensus sequence: HHTAATWWATTADD

Best Matches for Motif ID 125 (Highest to Lowest)

Motif ID: UP00105
Motif name: Pou3f4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0

Alignment:
DVHTAATTAATTADDDB
-HHTAATWWATTADD--

Original motif Reverse complement motif
Consensus sequence: DVHTAATTAATTADDDB Consensus sequence: BDDDTAATTAATTAHBD

Motif ID: UP00158
Motif name: Pou1f1
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 14
Similarity score: 0.000146898

Alignment:
DVDTAATTAATTADDDB
-HHTAATWWATTADD--

Original motif Reverse complement motif
Consensus sequence: DVDTAATTAATTADDDB Consensus sequence: BDHDTAATTAATTADBH

Motif ID: UP00129
Motif name: Pou3f1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 14
Similarity score: 0.00623234

Alignment:
DAVTTAATTAATTAVBD
--DDTAATWWATTAHH-

Original motif Reverse complement motif
Consensus sequence: DVBTAATTAATTAABTH Consensus sequence: DAVTTAATTAATTAVBD

Motif ID: UP00225
Motif name: Hlx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 14
Similarity score: 0.00935009

Alignment:
HDTAATTAATTAHDD
DDTAATWWATTAHH-

Original motif Reverse complement motif
Consensus sequence: HHHTAATTAATTAHH Consensus sequence: HDTAATTAATTAHDD

Motif ID: UP00200
Motif name: Nkx6-1_2825.2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 1
Number of overlap: 14
Similarity score: 0.0200997

Alignment:
VVTWATTAATTABBYC
--DDTAATWWATTAHH

Original motif Reverse complement motif
Consensus sequence: VVTWATTAATTABBYC Consensus sequence: GMVBTAATTAATWAVB

Dataset #: 4 Motif ID: 126 Motif name: yvTGCAGsCAcg

Original motif Reverse complement motif
Consensus sequence: BVTGCAGSCABV Consensus sequence: VBTGSCTGCAVB

Best Matches for Motif ID 126 (Highest to Lowest)

Motif ID: UP00031
Motif name: Zbtb3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0148057

Alignment:
BBBAVTGCAGTGBBVDD
---BVTGCAGSCABV--

Original motif Reverse complement motif
Consensus sequence: DDBBBCACTGCABTBBB Consensus sequence: BBBAVTGCAGTGBBVDD

Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0155444

Alignment:
HVHBVTGTCTGGDDHDD
---VBTGSCTGCAVB--

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD

Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 12
Similarity score: 0.0203202

Alignment:
HBGYGTGTGTGCVRVD
---VBTGSCTGCAVB-

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD

Motif ID: UP00000
Motif name: Smad3_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 12
Similarity score: 0.0217211

Alignment:
BHBHDTGGCGGGGBDHD
---VBTGSCTGCAVB--

Original motif Reverse complement motif
Consensus sequence: DHHBCCCCGCCAHHBHB Consensus sequence: BHBHDTGGCGGGGBDHD

Motif ID: UP00099
Motif name: Ascl2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 3
Number of overlap: 12
Similarity score: 0.0221555

Alignment:
HHDVVGCAGCTGVBKVB
--BVTGCAGSCABV---

Original motif Reverse complement motif
Consensus sequence: BBYVVCAGCTGCBVHHD Consensus sequence: HHDVVGCAGCTGVBKVB

Dataset #: 4 Motif ID: 127 Motif name: rryCAGGGAyw

Original motif Reverse complement motif
Consensus sequence: DDYCAGGGAHD Consensus sequence: DHTCCCTGMDD

Best Matches for Motif ID 127 (Highest to Lowest)

Motif ID: UP00031
Motif name: Zbtb3_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 11
Similarity score: 0.018701

Alignment:
DDHHTBCCAGTGABHG
----DDYCAGGGAHD-

Original motif Reverse complement motif
Consensus sequence: CHVTCACTGGBADHDD Consensus sequence: DDHHTBCCAGTGABHG

Motif ID: UP00000
Motif name: Smad3_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 4
Number of overlap: 11
Similarity score: 0.0230154

Alignment:
HDHDDCCAGACABBHVH
---DDYCAGGGAHD---

Original motif Reverse complement motif
Consensus sequence: HDHDDCCAGACABBHVH Consensus sequence: HVHBVTGTCTGGDDHDD

Motif ID: UP00031
Motif name: Zbtb3_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 11
Similarity score: 0.0300205

Alignment:
DDBBBCACTGCABTBBB
--DHTCCCTGMDD----

Original motif Reverse complement motif
Consensus sequence: DDBBBCACTGCABTBBB Consensus sequence: BBBAVTGCAGTGBBVDD

Motif ID: UP00018
Motif name: Irf4_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0316143

Alignment:
VVBAYTCTCGGWHDB
---DHTCCCTGMDD-

Original motif Reverse complement motif
Consensus sequence: VVBAYTCTCGGWHDB Consensus sequence: BHHWCCGAGAMTVVB

Motif ID: >UP00011
Motif name: Irf6_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 4
Number of overlap: 11
Similarity score: 0.0321346

Alignment:
VBBACTCYCGGKHDV
---DHTCCCTGMDD-

Original motif Reverse complement motif
Consensus sequence: VBBACTCYCGGKHDV Consensus sequence: VDDRCCGMGAGTBBB

Results created by MOTIFSIM on 06-18-2018 16:26:48
Runtime: 858.069 seconds

MOTIFSIM is written by Ngoc Tam L. Tran
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