MOTIFSIM - MOTIF SIMilarity Detection Tool

Version 2.2

INPUT

Input Parameters
Number of files: 4
Number of top significant motifs: 10
Number of best matches: 5
Similarity cutoff >= 0.75
Matching motif database: UniProbe Mus Musculus
Motif tree: Yes
Combined similar motifs: Yes
Output file type: All
Output file format: All

Input files and motif counts
File name Count of motifs Dataset number
DREME_DM01.txt 51 1
MEME-CHIP_DM01.txt 9 2
PScanChIP_DM01.txt 27 3
RSAT_peak-motifs_DM01.txt 40 4

RESULTS

Best Matches in Database for Each Motif (Highest to Lowest)

Dataset #: 1 Motif ID: 6 Motif name: Motif 6

Original motif Reverse complement motif
Consensus sequence: CCCASCMC Consensus sequence: GYGSTGGG

Best Matches for Motif ID 6 (Highest to Lowest)

Motif ID: UP00093
Motif name: Klf7_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 5
Number of overlap: 8
Similarity score: 0.00921145

Alignment:
HBDRCCMCGCCCHHHD
----CCCASCMC----

Original motif Reverse complement motif
Consensus sequence: HBDRCCMCGCCCHHHD Consensus sequence: DHHDGGGCGRGGKHBH


Motif ID: UP00539
Motif name: Gli2_v016060_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 13
Number of overlap: 8
Similarity score: 0.00924564

Alignment:
DBCDWHCTGGGTGGTCMDHBBAH
---GYGSTGGG------------

Original motif Reverse complement motif
Consensus sequence: DTVBDDRGACCACCCAGDWDGBH Consensus sequence: DBCDWHCTGGGTGGTCMDHBBAH


Motif ID: UP00021
Motif name: Zfp281_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 8
Similarity score: 0.0121799

Alignment:
DBCCCCCCCCCCMYC
--CCCASCMC-----

Original motif Reverse complement motif
Consensus sequence: DBCCCCCCCCCCMYC Consensus sequence: GKRGGGGGGGGGGBD


Motif ID: UP00033
Motif name: Zfp410_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.014495

Alignment:
BDDYYCATCCCATDDBD
---CCCASCMC------

Original motif Reverse complement motif
Consensus sequence: DVDDATGGGATGKMDDV Consensus sequence: BDDYYCATCCCATDDBD


Motif ID: UP00022
Motif name: Zfp740_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 8
Similarity score: 0.0175119

Alignment:
BHHDYGGGGGGGGBVD
---GYGSTGGG-----

Original motif Reverse complement motif
Consensus sequence: HVBCCCCCCCCMHHHB Consensus sequence: BHHDYGGGGGGGGBVD


Dataset #: 1 Motif ID: 24 Motif name: Motif 24

Original motif Reverse complement motif
Consensus sequence: CACGB Consensus sequence: BCGTG

Best Matches for Motif ID 24 (Highest to Lowest)

Motif ID: UP00097
Motif name: Mtf1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 9
Number of overlap: 5
Similarity score: 0

Alignment:
HDYTTGCACACGDHBH
--------CACGB---

Original motif Reverse complement motif
Consensus sequence: DBDHCGTGTGCAAMDH Consensus sequence: HDYTTGCACACGDHBH


Motif ID: UP00050
Motif name: Bhlhb2_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 11
Number of overlap: 5
Similarity score: 0.0184689

Alignment:
YDYBDHTMCACGTGGADDBMDGT
--------CACGB----------

Original motif Reverse complement motif
Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM


Motif ID: UP00050
Motif name: Bhlhb2_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 9
Number of overlap: 5
Similarity score: 0.0193222

Alignment:
RDHDBVDTCACGTGASBHVHDH
--------CACGB---------

Original motif Reverse complement motif
Consensus sequence: RDHDBVDTCACGTGASBHVHDH Consensus sequence: DDHBHBSTCACGTGAHBBDHHM


Motif ID: UP00060
Motif name: Max_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 5
Similarity score: 0.0231779

Alignment:
HHVBABCACGTGSTHD
------CACGB-----

Original motif Reverse complement motif
Consensus sequence: DDASCACGTGBTBVDD Consensus sequence: HHVBABCACGTGSTHD


Motif ID: UP00060
Motif name: Max_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0.02459

Alignment:
HDGTCGCGTGDCVB
-----BCGTG----

Original motif Reverse complement motif
Consensus sequence: BBGHCACGCGACDD Consensus sequence: HDGTCGCGTGDCVB


Dataset #: 1 Motif ID: 25 Motif name: Motif 25

Original motif Reverse complement motif
Consensus sequence: TTTAWW Consensus sequence: WWTAAA

Best Matches for Motif ID 25 (Highest to Lowest)

Motif ID: UP00180
Motif name: Hoxd13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0

Alignment:
HDHHTTTTATTKKHDD
-----TTTAWW-----

Original motif Reverse complement motif
Consensus sequence: HDHYYAATAAAAHHHH Consensus sequence: HDHHTTTTATTKKHDD


Motif ID: UP00134
Motif name: Hoxb13
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.00930561

Alignment:
VRHCCAATAAAAWHHV
-----WWTAAA-----

Original motif Reverse complement motif
Consensus sequence: VRHCCAATAAAAWHHV Consensus sequence: VDHWTTTTATTGGDKB


Motif ID: UP00121
Motif name: Hoxd10
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.0106116

Alignment:
HDDDATTTTATTKVRDB
------TTTAWW-----

Original motif Reverse complement motif
Consensus sequence: VDKVYAATAAAATDDDH Consensus sequence: HDDDATTTTATTKVRDB


Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.0135319

Alignment:
DWAATRTAAACAAWVVB
----WWTAAA-------

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD


Motif ID: UP00133
Motif name: Cdx2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 6
Similarity score: 0.0138323

Alignment:
HRHTTTTATYMCCVBD
----TTTAWW------

Original motif Reverse complement motif
Consensus sequence: DVVGGYMATAAAAHKH Consensus sequence: HRHTTTTATYMCCVBD


Dataset #: 2 Motif ID: 53 Motif name: Motif 53

Original motif Reverse complement motif
Consensus sequence: TSTGTR Consensus sequence: MACASA

Best Matches for Motif ID 53 (Highest to Lowest)

Motif ID: UP00026
Motif name: Zscan4_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0

Alignment:
BHHHTTGTGTGCKHVD
-----TSTGTR-----

Original motif Reverse complement motif
Consensus sequence: HVHRGCACACAAHHHV Consensus sequence: BHHHTTGTGTGCKHVD


Motif ID: UP00042
Motif name: Gm397_second
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 6
Similarity score: 0.00423357

Alignment:
HBGYGTGTGTGCVRVD
-----TSTGTR-----

Original motif Reverse complement motif
Consensus sequence: DVMVGCACACACKCVH Consensus sequence: HBGYGTGTGTGCVRVD


Motif ID: UP00026
Motif name: Zscan4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 6
Similarity score: 0.00980483

Alignment:
HDHTMTGTGCACADVHD
---TSTGTR--------

Original motif Reverse complement motif
Consensus sequence: DHVDTGTGCACAYAHDH Consensus sequence: HDHTMTGTGCACADVHD


Motif ID: UP00042
Motif name: Gm397_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 9
Number of overlap: 6
Similarity score: 0.0166332

Alignment:
HHRTATGTGCACATHHD
---TSTGTR--------

Original motif Reverse complement motif
Consensus sequence: HHDATGTGCACATAMDH Consensus sequence: HHRTATGTGCACATHHD


Motif ID: UP00041
Motif name: Foxj1_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Forward
Position number: 7
Number of overlap: 6
Similarity score: 0.0213483

Alignment:
HDHRTAAACAAAHDDD
------MACASA----

Original motif Reverse complement motif
Consensus sequence: HDHRTAAACAAAHDDD Consensus sequence: DDDHTTTGTTTAMHDH


Dataset #: 2 Motif ID: 54 Motif name: Motif 54

Original motif Reverse complement motif
Consensus sequence: RGAAA Consensus sequence: TTTCK

Best Matches for Motif ID 54 (Highest to Lowest)

Motif ID: UP00018
Motif name: Irf4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 5
Similarity score: 0

Alignment:
TBDKGTTTCGMTDHV
-----TTTCK-----

Original motif Reverse complement motif
Consensus sequence: VDDAYCGAAACYDVA Consensus sequence: TBDKGTTTCGMTDHV


Motif ID: UP00074
Motif name: Isgf3g_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 7
Number of overlap: 5
Similarity score: 0.00225908

Alignment:
TDAGTTTCGWTTKDV
----TTTCK------

Original motif Reverse complement motif
Consensus sequence: VDRAAWCGAAACTDA Consensus sequence: TDAGTTTCGWTTKDV


Motif ID: UP00040
Motif name: Irf5_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 5
Similarity score: 0.00434877

Alignment:
BDKGTTTCGKTWDDD
----TTTCK------

Original motif Reverse complement motif
Consensus sequence: DDDWAYCGAAACYDV Consensus sequence: BDKGTTTCGKTWDDD


Motif ID: UP00011
Motif name: Irf6_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 5
Similarity score: 0.0136873

Alignment:
DHDBTKGTTTCGHTHDD
-------TTTCK-----

Original motif Reverse complement motif
Consensus sequence: HDDAHCGAAACYAVDDD Consensus sequence: DHDBTKGTTTCGHTHDD


Motif ID: UP00043
Motif name: Bcl6b_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 10
Number of overlap: 5
Similarity score: 0.0141224

Alignment:
DCTTTCKAGGAATHHV
--TTTCK---------

Original motif Reverse complement motif
Consensus sequence: DCTTTCKAGGAATHHV Consensus sequence: VHHATTCCTYGAAAGD


Dataset #: 2 Motif ID: 55 Motif name: Motif 55

Original motif Reverse complement motif
Consensus sequence: TTTAAAA Consensus sequence: TTTTAAA

Best Matches for Motif ID 55 (Highest to Lowest)

Motif ID: UP00173
Motif name: Hoxc13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0

Alignment:
DHWTTTTAMGAGBDHH
----TTTAAAA-----

Original motif Reverse complement motif
Consensus sequence: HHDBCTCRTAAAAWHD Consensus sequence: DHWTTTTAMGAGBDHH


Motif ID: UP00061
Motif name: Foxl1_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 8
Number of overlap: 7
Similarity score: 0.00269372

Alignment:
VVVWTTGTTTAMATTWD
-------TTTAAAA---

Original motif Reverse complement motif
Consensus sequence: DWAATRTAAACAAWVVB Consensus sequence: VVVWTTGTTTAMATTWD


Motif ID: UP00245
Motif name: Hoxc10
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.00395798

Alignment:
VBDDTTTACGACDDDH
----TTTAAAA-----

Original motif Reverse complement motif
Consensus sequence: HDDDGTCGTAAADHBB Consensus sequence: VBDDTTTACGACDDDH


Motif ID: UP00246
Motif name: Hoxa11
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.00543955

Alignment:
DDDTTTTACGACDTDH
----TTTAAAA-----

Original motif Reverse complement motif
Consensus sequence: HDADGTCGTAAAAHDD Consensus sequence: DDDTTTTACGACDTDH


Motif ID: UP00183
Motif name: Hoxa13
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 7
Similarity score: 0.00548253

Alignment:
DVWTTTTACGAGBHDH
----TTTAAAA-----

Original motif Reverse complement motif
Consensus sequence: HDHBCTCGTAAAAWBD Consensus sequence: DVWTTTTACGAGBHDH


Dataset #: 3 Motif ID: 64 Motif name: ARID3A

Original motif Reverse complement motif
Consensus sequence: ATYAAA Consensus sequence: TTTMAT

Best Matches for Motif ID 64 (Highest to Lowest)

Motif ID: UP00212
Motif name: Lhx5
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0

Alignment:
VDHATTAATTAAAWHHB
-------ATYAAA----

Original motif Reverse complement motif
Consensus sequence: VDHATTAATTAAAWHHB Consensus sequence: VDHWTTTAATTAATHHV


Motif ID: UP00130
Motif name: Lhx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 6
Similarity score: 0.00146194

Alignment:
VHHWWTTAATTAATTDV
----TTTMAT-------

Original motif Reverse complement motif
Consensus sequence: VDAATTAATTAAWWHHB Consensus sequence: VHHWWTTAATTAATTDV


Motif ID: UP00169
Motif name: Lmx1b
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 5
Number of overlap: 6
Similarity score: 0.00211796

Alignment:
BHDATTAATTAAWWWHB
-------ATYAAA----

Original motif Reverse complement motif
Consensus sequence: VDWWWTTAATTAATDHB Consensus sequence: BHDATTAATTAAWWWHB


Motif ID: UP00213
Motif name: Hoxa9
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 6
Number of overlap: 6
Similarity score: 0.00270371

Alignment:
DCGGYCATWAAAWTADW
------ATYAAA-----

Original motif Reverse complement motif
Consensus sequence: DCGGYCATWAAAWTADW Consensus sequence: WDTAWTTTWATGKCCGD


Motif ID: UP00188
Motif name: Lmx1a
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 8
Number of overlap: 6
Similarity score: 0.00429494

Alignment:
BDWWWTTAATTAAHHVG
----TTTMAT-------

Original motif Reverse complement motif
Consensus sequence: CVHHTTAATTAAWWWHB Consensus sequence: BDWWWTTAATTAAHHVG


Dataset #: 3 Motif ID: 69 Motif name: NKX3-1

Original motif Reverse complement motif
Consensus sequence: ATACTTA Consensus sequence: TAAGTAT

Best Matches for Motif ID 69 (Highest to Lowest)

Motif ID: UP00154
Motif name: Dlx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0

Alignment:
DHVRGTAATTATHVVDV
-----TAAGTAT-----

Original motif Reverse complement motif
Consensus sequence: BHVVDATAATTACMVHH Consensus sequence: DHVRGTAATTATHVVDV


Motif ID: UP00110
Motif name: Dlx4
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 6
Number of overlap: 7
Similarity score: 0.000606776

Alignment:
GHVRGTAATTATDVVGV
-----TAAGTAT-----

Original motif Reverse complement motif
Consensus sequence: BCVVDATAATTACMVHC Consensus sequence: GHVRGTAATTATDVVGV


Motif ID: UP00108
Motif name: Alx3
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 7
Number of overlap: 7
Similarity score: 0.00319583

Alignment:
VHVAKMTAATTAKTHBW
------TAAGTAT----

Original motif Reverse complement motif
Consensus sequence: WVHAYTAATTARYTVHV Consensus sequence: VHVAKMTAATTAKTHBW


Motif ID: UP00202
Motif name: Dlx1
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 3
Number of overlap: 7
Similarity score: 0.00693044

Alignment:
BHGVRDTAATTADY
-----ATACTTA--

Original motif Reverse complement motif
Consensus sequence: BHGVRDTAATTADY Consensus sequence: MDTAATTAHMBCHB


Motif ID: UP00214
Motif name: Hoxb5
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 4
Number of overlap: 7
Similarity score: 0.00733424

Alignment:
HTDHGVTAATTABCVT
------TAAGTAT---

Original motif Reverse complement motif
Consensus sequence: AVGBTAATTAVCHHAH Consensus sequence: HTDHGVTAATTABCVT


Dataset #: 4 Motif ID: 94 Motif name: yrTCWCAAyr

Original motif Reverse complement motif
Consensus sequence: HVTCACAAYD Consensus sequence: HKTTGTGABH

Best Matches for Motif ID 94 (Highest to Lowest)

Motif ID: UP00004
Motif name: Sox14_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 5
Number of overlap: 10
Similarity score: 0.00180568

Alignment:
BBDCMATTGTSTBRB
----HKTTGTGABH-

Original motif Reverse complement motif
Consensus sequence: BKBASACAATRGHBB Consensus sequence: BBDCMATTGTSTBRB


Motif ID: UP00041
Motif name: Foxj1_secondary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Backward
Position number: 5
Number of overlap: 10
Similarity score: 0.00349348

Alignment:
HBVBCAYAACAABVH
-HVTCACAAYD----

Original motif Reverse complement motif
Consensus sequence: HBVBCAYAACAABVH Consensus sequence: DBBTTGTTKTGVVVH


Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 6
Number of overlap: 10
Similarity score: 0.00703247

Alignment:
HHBBMCTTTGTTHDDBH
-----HKTTGTGABH--

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH


Motif ID: UP00069
Motif name: Sox1_secondary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Original Motif
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.00766951

Alignment:
HBDTAATTGTTABBV
----HKTTGTGABH-

Original motif Reverse complement motif
Consensus sequence: HBDTAATTGTTABBV Consensus sequence: VBVTAACAATTADVD


Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 3
Number of overlap: 10
Similarity score: 0.00853696

Alignment:
HHBTMCTTTGTTMDDVH
-----HKTTGTGABH--

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH


Dataset #: 4 Motif ID: 96 Motif name: mdAAcCAACG

Original motif Reverse complement motif
Consensus sequence: VDAACCAACG Consensus sequence: CGTTGGTTDB

Best Matches for Motif ID 96 (Highest to Lowest)

Motif ID: UP00227
Motif name: Duxl
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Forward
Position number: 4
Number of overlap: 10
Similarity score: 0.00355394

Alignment:
VHVVGTTGATTGGGTMK
---CGTTGGTTDB----

Original motif Reverse complement motif
Consensus sequence: YRACCCAATCAACVVHV Consensus sequence: VHVVGTTGATTGGGTMK


Motif ID: UP00030
Motif name: Sox11_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.00855132

Alignment:
HBDDRAACAAAGRABHH
--VDAACCAACG-----

Original motif Reverse complement motif
Consensus sequence: HBDDRAACAAAGRABHH Consensus sequence: HHBTMCTTTGTTMDDVH


Motif ID: UP00145
Motif name: Barhl2
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 2
Number of overlap: 10
Similarity score: 0.0107325

Alignment:
HAMAAHCAATTAABHH
-VDAACCAACG-----

Original motif Reverse complement motif
Consensus sequence: HAMAAHCAATTAABHH Consensus sequence: HHBTTAATTGDTTYTH


Motif ID: UP00062
Motif name: Sox4_primary
Species: Mus musculus
Matching format of first motif: Original Motif
Matching format of second motif: Original Motif
Direction: Forward
Position number: 3
Number of overlap: 10
Similarity score: 0.0110249

Alignment:
HBDDDAACAAAGRVBHH
--VDAACCAACG-----

Original motif Reverse complement motif
Consensus sequence: HBDDDAACAAAGRVBHH Consensus sequence: HHBBMCTTTGTTHDDBH


Motif ID: UP00037
Motif name: Zfp105_primary
Species: Mus musculus
Matching format of first motif: Reverse Complement
Matching format of second motif: Reverse Complement
Direction: Backward
Position number: 2
Number of overlap: 10
Similarity score: 0.0135248

Alignment:
HHHTTRTTDTTTKDH
----CGTTGGTTDB-

Original motif Reverse complement motif
Consensus sequence: HDYAAAHAAMAADHD Consensus sequence: HHHTTRTTDTTTKDH


Results created by MOTIFSIM on 06-18-2018 16:26:48
Runtime: 858.069 seconds

MOTIFSIM is written by Ngoc Tam L. Tran
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