**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 4 Number of top significant motifs: 10 Number of best matches: 5 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # DREME_DM01.txt 51 1 MEME-CHIP_DM01.txt 9 2 PScanChIP_DM01.txt 27 3 RSAT_peak-motifs_DM01.txt 40 4 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ****************************************************************** Top 10 Significant Motifs - Global Matching (Highest to Lowest) ****************************************************************** Dataset #: 3 Motif ID: 69 Motif name: NKX3-1 Consensus sequence (original motif): ATACTTA Consensus sequence (reverse complement motif): TAAGTAT *************************************************************** Best Matches for Top Significant Motif ID 69 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 90 ymTACATAyw Original Motif Original Motif Forward 2 7 0 Consensus sequence (original motif): HHTACATABD Consensus sequence (reverse complement motif): DBTATGTAHH Alignment: HHTACATABD -ATACTTA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 Motif 10 Reverse Complement Reverse Complement Backward 1 7 0.00274846 Consensus sequence (original motif): HTACATA Consensus sequence (reverse complement motif): TATGTAD Alignment: TATGTAD TAAGTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 34 Motif 34 Original Motif Original Motif Backward 1 7 0.00883486 Consensus sequence (original motif): ATATTTA Consensus sequence (reverse complement motif): TAAATAT Alignment: ATATTTA ATACTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 106 wtAATTAAtw Reverse Complement Reverse Complement Forward 4 7 0.0100679 Consensus sequence (original motif): DTAATTAATH Consensus sequence (reverse complement motif): HATTAATTAD Alignment: HATTAATTAD ---TAAGTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 100 wwTAATAAww Reverse Complement Reverse Complement Forward 3 7 0.0316418 Consensus sequence (original motif): DHTAATAADD Consensus sequence (reverse complement motif): DDTTATTAHD Alignment: DDTTATTAHD --TAAGTAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 53 Motif name: Motif 53 Consensus sequence (original motif): TSTGTR Consensus sequence (reverse complement motif): MACASA *************************************************************** Best Matches for Top Significant Motif ID 53 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Reverse Complement Original Motif Backward 1 6 0.00228262 Consensus sequence (original motif): CACASASA Consensus sequence (reverse complement motif): TSTSTGTG Alignment: CACASASA --MACASA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 114 awAACAcAAwa Reverse Complement Original Motif Backward 4 6 0.0122629 Consensus sequence (original motif): DDAACACAADV Consensus sequence (reverse complement motif): BDTTGTGTTDD Alignment: DDAACACAADV --MACASA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 23 Motif 23 Original Motif Original Motif Forward 2 6 0.0137023 Consensus sequence (original motif): MTSTGTA Consensus sequence (reverse complement motif): TACASAR Alignment: MTSTGTA -TSTGTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Original Motif Reverse Complement Forward 2 6 0.0252334 Consensus sequence (original motif): ACACACAC Consensus sequence (reverse complement motif): GTGTGTGT Alignment: GTGTGTGT -TSTGTR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 12 Motif 12 Original Motif Reverse Complement Forward 2 6 0.0262273 Consensus sequence (original motif): GCACACAY Consensus sequence (reverse complement motif): MTGTGTGC Alignment: MTGTGTGC -TSTGTR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 25 Motif name: Motif 25 Consensus sequence (original motif): TTTAWW Consensus sequence (reverse complement motif): WWTAAA *************************************************************** Best Matches for Top Significant Motif ID 25 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 91 wtATTTTAww Reverse Complement Reverse Complement Forward 1 6 0.0116421 Consensus sequence (original motif): DHATTTTAWH Consensus sequence (reverse complement motif): HWTAAAATHD Alignment: HWTAAAATHD WWTAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Reverse Complement Reverse Complement Backward 6 6 0.0118254 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: HHTAAARATHD WWTAAA----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 70 Foxq1 Original Motif Original Motif Backward 1 6 0.0158082 Consensus sequence (original motif): HATTGTTTATW Consensus sequence (reverse complement motif): WATAAACAATH Alignment: HATTGTTTATW -----TTTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 55 Motif 55 Reverse Complement Reverse Complement Forward 2 6 0.0307675 Consensus sequence (original motif): TTTAAAA Consensus sequence (reverse complement motif): TTTTAAA Alignment: TTTTAAA -WWTAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Original Motif Original Motif Forward 6 6 0.0347747 Consensus sequence (original motif): KBDTRTTTRTTT Consensus sequence (reverse complement motif): AAAMAAAMADBY Alignment: KBDTRTTTRTTT -----TTTAWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 24 Motif name: Motif 24 Consensus sequence (original motif): CACGB Consensus sequence (reverse complement motif): BCGTG *************************************************************** Best Matches for Top Significant Motif ID 24 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 56 Motif 56 Original Motif Original Motif Backward 2 5 0 Consensus sequence (original motif): CACGGA Consensus sequence (reverse complement motif): TCCGTG Alignment: CACGGA CACGB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 115 ysCmAGCACwy Reverse Complement Reverse Complement Forward 1 5 0.0186397 Consensus sequence (original motif): HVCMAGCACHH Consensus sequence (reverse complement motif): DHGTGCTRGVH Alignment: DHGTGCTRGVH BCGTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 107 crCGyGCRcg Reverse Complement Original Motif Backward 5 5 0.019278 Consensus sequence (original motif): CGCGTGCACG Consensus sequence (reverse complement motif): CGTGCACGCG Alignment: CGCGTGCACG -BCGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 58 Motif 58 Original Motif Original Motif Forward 1 5 0.0339655 Consensus sequence (original motif): CACACACACACACA Consensus sequence (reverse complement motif): TGTGTGTGTGTGTG Alignment: CACACACACACACA CACGB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 93 cmCARCACTwr Reverse Complement Reverse Complement Backward 6 5 0.0385683 Consensus sequence (original motif): BHCAGCACTHV Consensus sequence (reverse complement motif): VHAGTGCTGHB Alignment: VHAGTGCTGHB -BCGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 54 Motif name: Motif 54 Consensus sequence (original motif): RGAAA Consensus sequence (reverse complement motif): TTTCK *************************************************************** Best Matches for Top Significant Motif ID 54 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 26 Motif 26 Original Motif Original Motif Backward 1 5 0 Consensus sequence (original motif): RGARGAAA Consensus sequence (reverse complement motif): TTTCKTCK Alignment: RGARGAAA ---RGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 28 Motif 28 Reverse Complement Reverse Complement Forward 1 5 0.0199405 Consensus sequence (original motif): AVAGAAA Consensus sequence (reverse complement motif): TTTCTVT Alignment: TTTCTVT TTTCK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 33 Motif 33 Reverse Complement Original Motif Backward 3 5 0.0284722 Consensus sequence (original motif): CMTTTCC Consensus sequence (reverse complement motif): GGAAARG Alignment: CMTTTCC TTTCK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 46 Motif 46 Original Motif Original Motif Backward 3 5 0.0284722 Consensus sequence (original motif): GGAAASA Consensus sequence (reverse complement motif): TSTTTCC Alignment: GGAAASA RGAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 44 Motif 44 Reverse Complement Reverse Complement Forward 3 5 0.0339244 Consensus sequence (original motif): AGAAATG Consensus sequence (reverse complement motif): CATTTCT Alignment: CATTTCT --TTTCK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 64 Motif name: ARID3A Consensus sequence (original motif): ATYAAA Consensus sequence (reverse complement motif): TTTMAT *************************************************************** Best Matches for Top Significant Motif ID 64 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 106 wtAATTAAtw Original Motif Original Motif Forward 4 6 0.0114914 Consensus sequence (original motif): DTAATTAATH Consensus sequence (reverse complement motif): HATTAATTAD Alignment: DTAATTAATH ---ATYAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 20 Motif 20 Original Motif Original Motif Forward 1 6 0.015396 Consensus sequence (original motif): ATTAMAGG Consensus sequence (reverse complement motif): CCTYTAAT Alignment: ATTAMAGG ATYAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 49 Motif 49 Reverse Complement Reverse Complement Forward 1 6 0.0340365 Consensus sequence (original motif): AGATAAAR Consensus sequence (reverse complement motif): KTTTATCT Alignment: KTTTATCT TTTMAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 25 Motif 25 Original Motif Reverse Complement Backward 1 6 0.0368439 Consensus sequence (original motif): TTTAWW Consensus sequence (reverse complement motif): WWTAAA Alignment: WWTAAA ATYAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 100 wwTAATAAww Reverse Complement Original Motif Backward 5 6 0.0394923 Consensus sequence (original motif): DHTAATAADD Consensus sequence (reverse complement motif): DDTTATTAHD Alignment: DHTAATAADD TTTMAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 6 Motif name: Motif 6 Consensus sequence (original motif): CCCASCMC Consensus sequence (reverse complement motif): GYGSTGGG *************************************************************** Best Matches for Top Significant Motif ID 6 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 115 ysCmAGCACwy Reverse Complement Reverse Complement Forward 3 8 0.0212781 Consensus sequence (original motif): HVCMAGCACHH Consensus sequence (reverse complement motif): DHGTGCTRGVH Alignment: DHGTGCTRGVH --GYGSTGGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 111 ccCCmCaCCCCcc Original Motif Original Motif Backward 3 8 0.0266863 Consensus sequence (original motif): HBCCCCACCCCBH Consensus sequence (reverse complement motif): DBGGGGTGGGGBD Alignment: HBCCCCACCCCBH ---CCCASCMC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 93 cmCARCACTwr Original Motif Original Motif Backward 4 8 0.030511 Consensus sequence (original motif): BHCAGCACTHV Consensus sequence (reverse complement motif): VHAGTGCTGHB Alignment: BHCAGCACTHV CCCASCMC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Reverse Complement Reverse Complement Backward 2 8 0.0322039 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: HBYGAGCTGGBB ---GYGSTGGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 101 csCACCCCgg Original Motif Original Motif Forward 1 8 0.0415267 Consensus sequence (original motif): HVCACCCCBB Consensus sequence (reverse complement motif): BBGGGGTGVD Alignment: HVCACCCCBB CCCASCMC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 94 Motif name: yrTCWCAAyr Consensus sequence (original motif): HVTCACAAYD Consensus sequence (reverse complement motif): HKTTGTGABH *************************************************************** Best Matches for Top Significant Motif ID 94 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 76 Sox2 Reverse Complement Original Motif Backward 2 10 0.00762497 Consensus sequence (original motif): CCWTTGTYATGCAAA Consensus sequence (reverse complement motif): TTTGCATMACAAWGG Alignment: CCWTTGTYATGCAAA ----HKTTGTGABH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 80 Pou5f1 Reverse Complement Original Motif Forward 6 10 0.0127574 Consensus sequence (original motif): CWTTGTHATGCAAAT Consensus sequence (reverse complement motif): ATTTGCATHACAAWG Alignment: CWTTGTHATGCAAAT -----HKTTGTGABH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Original Motif Original Motif Forward 20 10 0.0426407 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC -------------------HVTCACAAYD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 62 TBP Original Motif Original Motif Backward 5 10 0.0429648 Consensus sequence (original motif): STATAAAWRVVVVBV Consensus sequence (reverse complement motif): VBVVVVMWTTTATAS Alignment: STATAAAWRVVVVBV -HVTCACAAYD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 83 NR2F1 Reverse Complement Original Motif Forward 1 10 0.0463536 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: TGAMCTTTGMMCYT HKTTGTGABH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 55 Motif name: Motif 55 Consensus sequence (original motif): TTTAAAA Consensus sequence (reverse complement motif): TTTTAAA *************************************************************** Best Matches for Top Significant Motif ID 55 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 120 wtTTTwAAAaw Original Motif Original Motif Forward 3 7 0.00286145 Consensus sequence (original motif): HHTTTWAAADD Consensus sequence (reverse complement motif): DDTTTWAAAHH Alignment: HHTTTWAAADD --TTTAAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 Motif 9 Original Motif Reverse Complement Forward 2 7 0.0142562 Consensus sequence (original motif): TTTWWAAA Consensus sequence (reverse complement motif): TTTWWAAA Alignment: TTTWWAAA -TTTAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 91 wtATTTTAww Original Motif Reverse Complement Forward 1 7 0.036821 Consensus sequence (original motif): DHATTTTAWH Consensus sequence (reverse complement motif): HWTAAAATHD Alignment: HWTAAAATHD TTTAAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Reverse Complement Original Motif Backward 1 7 0.0428268 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: DHATKTTTAHH ----TTTTAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 62 TBP Reverse Complement Reverse Complement Forward 8 7 0.058454 Consensus sequence (original motif): STATAAAWRVVVVBV Consensus sequence (reverse complement motif): VBVVVVMWTTTATAS Alignment: VBVVVVMWTTTATAS -------TTTTAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 96 Motif name: mdAAcCAACG Consensus sequence (original motif): VDAACCAACG Consensus sequence (reverse complement motif): CGTTGGTTDB *************************************************************** Best Matches for Top Significant Motif ID 96 (Highest to Lowest) *************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Reverse Complement Reverse Complement Backward 3 10 0.0244161 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT Alignment: YTTTTTRTTTTDTT --CGTTGGTTDB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 70 Foxq1 Reverse Complement Original Motif Backward 1 10 0.0266383 Consensus sequence (original motif): HATTGTTTATW Consensus sequence (reverse complement motif): WATAAACAATH Alignment: HATTGTTTATW -CGTTGGTTDB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Original Motif Reverse Complement Backward 3 10 0.036655 Consensus sequence (original motif): KBDTRTTTRTTT Consensus sequence (reverse complement motif): AAAMAAAMADBY Alignment: AAAMAAAMADBY VDAACCAACG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 83 NR2F1 Reverse Complement Original Motif Forward 1 10 0.0376121 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: TGAMCTTTGMMCYT CGTTGGTTDB---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 76 Sox2 Original Motif Reverse Complement Backward 6 10 0.0382008 Consensus sequence (original motif): CCWTTGTYATGCAAA Consensus sequence (reverse complement motif): TTTGCATMACAAWGG Alignment: TTTGCATMACAAWGG VDAACCAACG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** **************************************************************** Significant Motifs - Global and Local Matching (Highest to Lowest) **************************************************************** Dataset #: 3 Motif ID: 69 Motif name: NKX3-1 Consensus sequence (original motif): ATACTTA Consensus sequence (reverse complement motif): TAAGTAT ************************************************************** Best Matches for Significant Motif ID 69 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 90 ymTACATAyw Original Motif Original Motif Forward 2 7 0 Consensus sequence (original motif): HHTACATABD Consensus sequence (reverse complement motif): DBTATGTAHH Alignment: HHTACATABD -ATACTTA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 66 Lhx3 Reverse Complement Original Motif Backward 5 7 0.000214177 Consensus sequence (original motif): WAATTAATTAWYB Consensus sequence (reverse complement motif): BMWTAATTAATTW Alignment: WAATTAATTAWYB --TAAGTAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 Motif 10 Reverse Complement Reverse Complement Backward 1 7 0.00274846 Consensus sequence (original motif): HTACATA Consensus sequence (reverse complement motif): TATGTAD Alignment: TATGTAD TAAGTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 34 Motif 34 Original Motif Original Motif Backward 1 7 0.00883486 Consensus sequence (original motif): ATATTTA Consensus sequence (reverse complement motif): TAAATAT Alignment: ATATTTA ATACTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 106 wtAATTAAtw Reverse Complement Reverse Complement Forward 4 7 0.0100679 Consensus sequence (original motif): DTAATTAATH Consensus sequence (reverse complement motif): HATTAATTAD Alignment: HATTAATTAD ---TAAGTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 94 Motif name: yrTCWCAAyr Consensus sequence (original motif): HVTCACAAYD Consensus sequence (reverse complement motif): HKTTGTGABH ************************************************************** Best Matches for Significant Motif ID 94 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 114 awAACAcAAwa Reverse Complement Reverse Complement Forward 1 10 0.00495535 Consensus sequence (original motif): DDAACACAADV Consensus sequence (reverse complement motif): BDTTGTGTTDD Alignment: BDTTGTGTTDD HKTTGTGABH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 76 Sox2 Reverse Complement Original Motif Backward 2 10 0.00762497 Consensus sequence (original motif): CCWTTGTYATGCAAA Consensus sequence (reverse complement motif): TTTGCATMACAAWGG Alignment: CCWTTGTYATGCAAA ----HKTTGTGABH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 100 wwTAATAAww Reverse Complement Reverse Complement Forward 1 10 0.0114769 Consensus sequence (original motif): DHTAATAADD Consensus sequence (reverse complement motif): DDTTATTAHD Alignment: DDTTATTAHD HKTTGTGABH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 80 Pou5f1 Reverse Complement Original Motif Forward 6 10 0.0127574 Consensus sequence (original motif): CWTTGTHATGCAAAT Consensus sequence (reverse complement motif): ATTTGCATHACAAWG Alignment: CWTTGTHATGCAAAT -----HKTTGTGABH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 89 aaACAAAACaa Original Motif Original Motif Forward 1 10 0.0208363 Consensus sequence (original motif): AAACAAAACHV Consensus sequence (reverse complement motif): BHGTTTTGTTT Alignment: AAACAAAACHV HVTCACAAYD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 77 Motif name: Sox5 Consensus sequence (original motif): HAACAAT Consensus sequence (reverse complement motif): ATTGTTH ************************************************************** Best Matches for Significant Motif ID 77 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 87 SOX9 Reverse Complement Reverse Complement Forward 3 7 0 Consensus sequence (original motif): DAACAATRG Consensus sequence (reverse complement motif): CMATTGTTH Alignment: CMATTGTTH --ATTGTTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 73 SRY Reverse Complement Reverse Complement Forward 1 7 0.0011033 Consensus sequence (original motif): BDWAACAAT Consensus sequence (reverse complement motif): ATTGTTWDB Alignment: ATTGTTWDB ATTGTTH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 76 Sox2 Reverse Complement Original Motif Forward 7 7 0.022869 Consensus sequence (original motif): CCWTTGTYATGCAAA Consensus sequence (reverse complement motif): TTTGCATMACAAWGG Alignment: CCWTTGTYATGCAAA ------ATTGTTH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 70 Foxq1 Original Motif Reverse Complement Backward 4 7 0.0242658 Consensus sequence (original motif): HATTGTTTATW Consensus sequence (reverse complement motif): WATAAACAATH Alignment: WATAAACAATH -HAACAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 89 aaACAAAACaa Original Motif Original Motif Forward 1 7 0.0278776 Consensus sequence (original motif): AAACAAAACHV Consensus sequence (reverse complement motif): BHGTTTTGTTT Alignment: AAACAAAACHV HAACAAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 53 Motif name: Motif 53 Consensus sequence (original motif): TSTGTR Consensus sequence (reverse complement motif): MACASA ************************************************************** Best Matches for Significant Motif ID 53 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Original Motif Reverse Complement Forward 1 6 0.00228262 Consensus sequence (original motif): CACASASA Consensus sequence (reverse complement motif): TSTSTGTG Alignment: TSTSTGTG TSTGTR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 114 awAACAcAAwa Reverse Complement Original Motif Backward 4 6 0.0122629 Consensus sequence (original motif): DDAACACAADV Consensus sequence (reverse complement motif): BDTTGTGTTDD Alignment: DDAACACAADV --MACASA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 23 Motif 23 Original Motif Original Motif Forward 2 6 0.0137023 Consensus sequence (original motif): MTSTGTA Consensus sequence (reverse complement motif): TACASAR Alignment: MTSTGTA -TSTGTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Original Motif Reverse Complement Backward 2 6 0.0252334 Consensus sequence (original motif): ACACACAC Consensus sequence (reverse complement motif): GTGTGTGT Alignment: GTGTGTGT -TSTGTR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 58 Motif 58 Reverse Complement Original Motif Forward 1 6 0.025412 Consensus sequence (original motif): CACACACACACACA Consensus sequence (reverse complement motif): TGTGTGTGTGTGTG Alignment: CACACACACACACA MACASA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 102 Motif name: ssCkGGYCCCsg Consensus sequence (original motif): BBCKGGCCCCVV Consensus sequence (reverse complement motif): VVGGGGCCRGBB ************************************************************** Best Matches for Significant Motif ID 102 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 103 csCCaGCTCCCgs Reverse Complement Reverse Complement Forward 2 12 0.00699729 Consensus sequence (original motif): BBCCAGCTCCCVB Consensus sequence (reverse complement motif): BVGGGAGCTGGBB Alignment: BVGGGAGCTGGBB -VVGGGGCCRGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 124 cswGGGCCCwsg Original Motif Original Motif Backward 1 12 0.00901563 Consensus sequence (original motif): VVWGGGCCCWBB Consensus sequence (reverse complement motif): BBWGGGCCCWVV Alignment: VVWGGGCCCWBB BBCKGGCCCCVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 111 ccCCmCaCCCCcc Reverse Complement Reverse Complement Backward 2 12 0.015463 Consensus sequence (original motif): HBCCCCACCCCBH Consensus sequence (reverse complement motif): DBGGGGTGGGGBD Alignment: DBGGGGTGGGGBD VVGGGGCCRGBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 122 hsCCAGGCCTGGsr Original Motif Original Motif Backward 2 12 0.0222107 Consensus sequence (original motif): HVCCAGGCCTGGBD Consensus sequence (reverse complement motif): HBCCAGGCCTGGVD Alignment: HVCCAGGCCTGGBD -BBCKGGCCCCVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Original Motif Original Motif Backward 1 12 0.0277516 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: BBCCAGCTCMBD BBCKGGCCCCVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 95 Motif name: rmATGCTAww Consensus sequence (original motif): DHATGCTADH Consensus sequence (reverse complement motif): HDTAGCATHD ************************************************************** Best Matches for Significant Motif ID 95 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 91 wtATTTTAww Original Motif Original Motif Backward 1 10 0.00863735 Consensus sequence (original motif): DHATTTTAWH Consensus sequence (reverse complement motif): HWTAAAATHD Alignment: DHATTTTAWH DHATGCTADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 115 ysCmAGCACwy Original Motif Reverse Complement Forward 1 10 0.0142021 Consensus sequence (original motif): HVCMAGCACHH Consensus sequence (reverse complement motif): DHGTGCTRGVH Alignment: DHGTGCTRGVH DHATGCTADH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 80 Pou5f1 Original Motif Original Motif Backward 1 10 0.0215325 Consensus sequence (original motif): CWTTGTHATGCAAAT Consensus sequence (reverse complement motif): ATTTGCATHACAAWG Alignment: CWTTGTHATGCAAAT -----DHATGCTADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 123 asMAAGCTTKst Original Motif Original Motif Forward 2 10 0.0234838 Consensus sequence (original motif): HBCAAGCTTGVD Consensus sequence (reverse complement motif): DVCAAGCTTGBH Alignment: HBCAAGCTTGVD -DHATGCTADH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 93 cmCARCACTwr Original Motif Reverse Complement Backward 2 10 0.0266703 Consensus sequence (original motif): BHCAGCACTHV Consensus sequence (reverse complement motif): VHAGTGCTGHB Alignment: VHAGTGCTGHB DHATGCTADH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 105 Motif name: ccGCAGCCss Consensus sequence (original motif): VCGCAGCCBB Consensus sequence (reverse complement motif): BBGGCTGCGV ************************************************************** Best Matches for Significant Motif ID 105 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 126 yvTGCAGsCAcg Reverse Complement Reverse Complement Backward 2 10 0 Consensus sequence (original motif): BVTGCAGSCABV Consensus sequence (reverse complement motif): VBTGSCTGCAVB Alignment: VBTGSCTGCAVB -BBGGCTGCGV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 103 csCCaGCTCCCgs Reverse Complement Reverse Complement Forward 1 10 0.0101194 Consensus sequence (original motif): BBCCAGCTCCCVB Consensus sequence (reverse complement motif): BVGGGAGCTGGBB Alignment: BVGGGAGCTGGBB BBGGCTGCGV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 102 ssCkGGYCCCsg Reverse Complement Original Motif Backward 3 10 0.0260007 Consensus sequence (original motif): BBCKGGCCCCVV Consensus sequence (reverse complement motif): VVGGGGCCRGBB Alignment: BBCKGGCCCCVV BBGGCTGCGV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Reverse Complement Reverse Complement Forward 3 10 0.0296738 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: HBYGAGCTGGBB --BBGGCTGCGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 116 dyCTGCyTCyc Reverse Complement Original Motif Forward 2 10 0.0303133 Consensus sequence (original motif): DHCTGCYTCHB Consensus sequence (reverse complement motif): BHGAKGCAGHH Alignment: DHCTGCYTCHB -BBGGCTGCGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 24 Motif name: Motif 24 Consensus sequence (original motif): CACGB Consensus sequence (reverse complement motif): BCGTG ************************************************************** Best Matches for Significant Motif ID 24 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 56 Motif 56 Reverse Complement Reverse Complement Forward 2 5 0 Consensus sequence (original motif): CACGGA Consensus sequence (reverse complement motif): TCCGTG Alignment: TCCGTG -BCGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 115 ysCmAGCACwy Reverse Complement Reverse Complement Forward 1 5 0.0186397 Consensus sequence (original motif): HVCMAGCACHH Consensus sequence (reverse complement motif): DHGTGCTRGVH Alignment: DHGTGCTRGVH BCGTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 107 crCGyGCRcg Reverse Complement Original Motif Forward 2 5 0.019278 Consensus sequence (original motif): CGCGTGCACG Consensus sequence (reverse complement motif): CGTGCACGCG Alignment: CGCGTGCACG -BCGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 12 Motif 12 Original Motif Original Motif Forward 4 5 0.0246242 Consensus sequence (original motif): GCACACAY Consensus sequence (reverse complement motif): MTGTGTGC Alignment: GCACACAY ---CACGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Original Motif Original Motif Forward 1 5 0.0336642 Consensus sequence (original motif): CACASASA Consensus sequence (reverse complement motif): TSTSTGTG Alignment: CACASASA CACGB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 25 Motif name: Motif 25 Consensus sequence (original motif): TTTAWW Consensus sequence (reverse complement motif): WWTAAA ************************************************************** Best Matches for Significant Motif ID 25 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 91 wtATTTTAww Reverse Complement Reverse Complement Forward 1 6 0.0116421 Consensus sequence (original motif): DHATTTTAWH Consensus sequence (reverse complement motif): HWTAAAATHD Alignment: HWTAAAATHD WWTAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Original Motif Original Motif Backward 1 6 0.0118254 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: DHATKTTTAHH -----TTTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 70 Foxq1 Original Motif Original Motif Backward 1 6 0.0158082 Consensus sequence (original motif): HATTGTTTATW Consensus sequence (reverse complement motif): WATAAACAATH Alignment: HATTGTTTATW -----TTTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 Motif 3 Reverse Complement Original Motif Forward 1 6 0.0300892 Consensus sequence (original motif): AWATAMA Consensus sequence (reverse complement motif): TYTATWT Alignment: AWATAMA WWTAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 55 Motif 55 Original Motif Original Motif Backward 2 6 0.0307675 Consensus sequence (original motif): TTTAAAA Consensus sequence (reverse complement motif): TTTTAAA Alignment: TTTAAAA TTTAWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 109 Motif name: aaCAAAAACaa Consensus sequence (original motif): HHCAAAAACHH Consensus sequence (reverse complement motif): HHGTTTTTGHH ************************************************************** Best Matches for Significant Motif ID 109 (Highest to Lowest) ************************************************************** Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 89 aaACAAAACaa Reverse Complement Reverse Complement Backward 1 11 0.00652588 Consensus sequence (original motif): AAACAAAACHV Consensus sequence (reverse complement motif): BHGTTTTGTTT Alignment: BHGTTTTGTTT HHGTTTTTGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 117 yaCATAYACay Reverse Complement Reverse Complement Backward 1 11 0.0113253 Consensus sequence (original motif): HVCATACACAH Consensus sequence (reverse complement motif): DTGTGTATGBD Alignment: DTGTGTATGBD HHGTTTTTGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Reverse Complement Original Motif Forward 1 11 0.0251184 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: DHATKTTTAHH HHGTTTTTGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 75 FOXF2 Original Motif Original Motif Backward 2 11 0.0278186 Consensus sequence (original motif): BHADSGTAAACAAD Consensus sequence (reverse complement motif): DTTGTTTACSBTBB Alignment: BHADSGTAAACAAD --HHCAAAAACHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Reverse Complement Original Motif Forward 2 11 0.0320335 Consensus sequence (original motif): KBDTRTTTRTTT Consensus sequence (reverse complement motif): AAAMAAAMADBY Alignment: KBDTRTTTRTTT -HHGTTTTTGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches for Each Motif (Highest to Lowest) ***************************************************************************** Dataset #: 1 Motif ID: 1 Motif name: Motif 1 Consensus sequence (original motif): AAAAAMAA Consensus sequence (reverse complement motif): TTYTTTTT ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Original Motif Original Motif Forward 3 8 0.0315879 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT Alignment: AADAAAAMAAAAAM --AAAAAMAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 Motif 5 Original Motif Original Motif Backward 1 8 0.0375279 Consensus sequence (original motif): AAASAAAA Consensus sequence (reverse complement motif): TTTTSTTT Alignment: AAASAAAA AAAAAMAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 109 aaCAAAAACaa Original Motif Original Motif Forward 4 8 0.0446212 Consensus sequence (original motif): HHCAAAAACHH Consensus sequence (reverse complement motif): HHGTTTTTGHH Alignment: HHCAAAAACHH ---AAAAAMAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Original Motif Reverse Complement Backward 3 8 0.0453228 Consensus sequence (original motif): KBDTRTTTRTTT Consensus sequence (reverse complement motif): AAAMAAAMADBY Alignment: AAAMAAAMADBY --AAAAAMAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 114 awAACAcAAwa Original Motif Original Motif Backward 3 8 0.0467797 Consensus sequence (original motif): DDAACACAADV Consensus sequence (reverse complement motif): BDTTGTGTTDD Alignment: DDAACACAADV -AAAAAMAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Reverse Complement Original Motif Backward 4 8 0.0570668 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: DHATKTTTAHH TTYTTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: Motif 2 Consensus sequence (original motif): ACACACAC Consensus sequence (reverse complement motif): GTGTGTGT ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 58 Motif 58 Reverse Complement Reverse Complement Forward 6 8 0.0337866 Consensus sequence (original motif): CACACACACACACA Consensus sequence (reverse complement motif): TGTGTGTGTGTGTG Alignment: TGTGTGTGTGTGTG -----GTGTGTGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 117 yaCATAYACay Reverse Complement Reverse Complement Forward 3 8 0.0556866 Consensus sequence (original motif): HVCATACACAH Consensus sequence (reverse complement motif): DTGTGTATGBD Alignment: DTGTGTATGBD --GTGTGTGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 12 Motif 12 Original Motif Original Motif Forward 1 8 0.0626247 Consensus sequence (original motif): GCACACAY Consensus sequence (reverse complement motif): MTGTGTGC Alignment: GCACACAY ACACACAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 21 Motif 21 Original Motif Original Motif Backward 1 8 0.0696577 Consensus sequence (original motif): AAACAAAC Consensus sequence (reverse complement motif): GTTTGTTT Alignment: AAACAAAC ACACACAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 37 Motif 37 Reverse Complement Original Motif Forward 1 8 0.07313 Consensus sequence (original motif): GYATGTGY Consensus sequence (reverse complement motif): KCACATKC Alignment: GYATGTGY GTGTGTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 3 Motif name: Motif 3 Consensus sequence (original motif): AWATAMA Consensus sequence (reverse complement motif): TYTATWT ************************************************************************ Best Matches for Motif ID 3 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 Motif 1 Original Motif Original Motif Backward 2 7 0.00716822 Consensus sequence (original motif): AAAAAMAA Consensus sequence (reverse complement motif): TTYTTTTT Alignment: AAAAAMAA AWATAMA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 49 Motif 49 Reverse Complement Reverse Complement Backward 1 7 0.021456 Consensus sequence (original motif): AGATAAAR Consensus sequence (reverse complement motif): KTTTATCT Alignment: KTTTATCT -TYTATWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Reverse Complement Original Motif Forward 6 7 0.0260643 Consensus sequence (original motif): KBDTRTTTRTTT Consensus sequence (reverse complement motif): AAAMAAAMADBY Alignment: KBDTRTTTRTTT -----TYTATWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Reverse Complement Reverse Complement Backward 5 7 0.031739 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT Alignment: YTTTTTRTTTTDTT ---TYTATWT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 90 ymTACATAyw Reverse Complement Reverse Complement Backward 4 7 0.034879 Consensus sequence (original motif): HHTACATABD Consensus sequence (reverse complement motif): DBTATGTAHH Alignment: DBTATGTAHH TYTATWT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 4 Motif name: Motif 4 Consensus sequence (original motif): GAGRMAGR Consensus sequence (reverse complement motif): KCTRMCTC ************************************************************************ Best Matches for Motif ID 4 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 116 dyCTGCyTCyc Original Motif Reverse Complement Backward 2 8 0.0229288 Consensus sequence (original motif): DHCTGCYTCHB Consensus sequence (reverse complement motif): BHGAKGCAGHH Alignment: BHGAKGCAGHH --GAGRMAGR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 113 htCTGyKTCbt Original Motif Reverse Complement Forward 3 8 0.0339962 Consensus sequence (original motif): HBCTGYTTCBH Consensus sequence (reverse complement motif): HVGAAMCAGVH Alignment: HVGAAMCAGVH --GAGRMAGR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 112 ctGAGTkTGAgg Reverse Complement Reverse Complement Backward 3 8 0.0422491 Consensus sequence (original motif): VBGAGTKTGADD Consensus sequence (reverse complement motif): HHTCARACTCVV Alignment: HHTCARACTCVV --KCTRMCTC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 121 ctGAGTCATCkb Reverse Complement Reverse Complement Forward 3 8 0.0508307 Consensus sequence (original motif): HDGAGTCATCDB Consensus sequence (reverse complement motif): BHGATGACTCDD Alignment: BHGATGACTCDD --KCTRMCTC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 18 Motif 18 Original Motif Original Motif Forward 1 8 0.0519824 Consensus sequence (original motif): GRRAGAGA Consensus sequence (reverse complement motif): TCTCTMKC Alignment: GRRAGAGA GAGRMAGR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 5 Motif name: Motif 5 Consensus sequence (original motif): AAASAAAA Consensus sequence (reverse complement motif): TTTTSTTT ************************************************************************ Best Matches for Motif ID 5 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Original Motif Original Motif Forward 5 8 0.0229557 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT Alignment: AADAAAAMAAAAAM ----AAASAAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 1 Motif 1 Reverse Complement Reverse Complement Forward 1 8 0.0330694 Consensus sequence (original motif): AAAAAMAA Consensus sequence (reverse complement motif): TTYTTTTT Alignment: TTYTTTTT TTTTSTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 89 aaACAAAACaa Reverse Complement Reverse Complement Forward 4 8 0.0345209 Consensus sequence (original motif): AAACAAAACHV Consensus sequence (reverse complement motif): BHGTTTTGTTT Alignment: BHGTTTTGTTT ---TTTTSTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 21 Motif 21 Original Motif Original Motif Backward 1 8 0.0346745 Consensus sequence (original motif): AAACAAAC Consensus sequence (reverse complement motif): GTTTGTTT Alignment: AAACAAAC AAASAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 65 Foxd3 Original Motif Reverse Complement Forward 1 8 0.0440489 Consensus sequence (original motif): GAWTGTTTDTTT Consensus sequence (reverse complement motif): AAAHAAACAWTC Alignment: AAAHAAACAWTC AAASAAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 6 Motif name: Motif 6 Consensus sequence (original motif): CCCASCMC Consensus sequence (reverse complement motif): GYGSTGGG ************************************************************************ Best Matches for Motif ID 6 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 22 Motif 22 Original Motif Reverse Complement Backward 1 8 0.00727797 Consensus sequence (original motif): GTGGTGGY Consensus sequence (reverse complement motif): MCCACCAC Alignment: MCCACCAC CCCASCMC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 115 ysCmAGCACwy Reverse Complement Reverse Complement Forward 3 8 0.0212781 Consensus sequence (original motif): HVCMAGCACHH Consensus sequence (reverse complement motif): DHGTGCTRGVH Alignment: DHGTGCTRGVH --GYGSTGGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 111 ccCCmCaCCCCcc Original Motif Original Motif Backward 3 8 0.0266863 Consensus sequence (original motif): HBCCCCACCCCBH Consensus sequence (reverse complement motif): DBGGGGTGGGGBD Alignment: HBCCCCACCCCBH ---CCCASCMC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 42 Motif 42 Reverse Complement Reverse Complement Forward 1 8 0.030487 Consensus sequence (original motif): CCYAGAAC Consensus sequence (reverse complement motif): GTTCTKGG Alignment: GTTCTKGG GYGSTGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 93 cmCARCACTwr Original Motif Original Motif Backward 4 8 0.030511 Consensus sequence (original motif): BHCAGCACTHV Consensus sequence (reverse complement motif): VHAGTGCTGHB Alignment: BHCAGCACTHV CCCASCMC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 7 Motif name: Motif 7 Consensus sequence (original motif): CACASASA Consensus sequence (reverse complement motif): TSTSTGTG ************************************************************************ Best Matches for Motif ID 7 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 58 Motif 58 Reverse Complement Reverse Complement Forward 7 8 0.0271648 Consensus sequence (original motif): CACACACACACACA Consensus sequence (reverse complement motif): TGTGTGTGTGTGTG Alignment: TGTGTGTGTGTGTG ------TSTSTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 41 Motif 41 Original Motif Original Motif Forward 1 8 0.0361772 Consensus sequence (original motif): CTCAGARA Consensus sequence (reverse complement motif): TKTCTGAG Alignment: CTCAGARA CACASASA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 117 yaCATAYACay Reverse Complement Reverse Complement Forward 2 8 0.0572872 Consensus sequence (original motif): HVCATACACAH Consensus sequence (reverse complement motif): DTGTGTATGBD Alignment: DTGTGTATGBD -TSTSTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 118 yrCACATGCATGTGyr Original Motif Original Motif Backward 7 8 0.0627214 Consensus sequence (original motif): HVCACATGCATGTGBD Consensus sequence (reverse complement motif): DVCACATGCATGTGBH Alignment: HVCACATGCATGTGBD --CACASASA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 114 awAACAcAAwa Original Motif Original Motif Forward 3 8 0.0715956 Consensus sequence (original motif): DDAACACAADV Consensus sequence (reverse complement motif): BDTTGTGTTDD Alignment: DDAACACAADV --CACASASA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 8 Motif name: Motif 8 Consensus sequence (original motif): CTGGCYTY Consensus sequence (reverse complement motif): KAKGCCAG ************************************************************************ Best Matches for Motif ID 8 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 97 sgArGCCACg Reverse Complement Original Motif Forward 2 8 0.0352649 Consensus sequence (original motif): SGARGCCACG Consensus sequence (reverse complement motif): CGTGGCKTCS Alignment: SGARGCCACG -KAKGCCAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 92 cgAKGyCAcg Reverse Complement Original Motif Backward 2 8 0.0406315 Consensus sequence (original motif): CGAGGYCACV Consensus sequence (reverse complement motif): VGTGMCCTCG Alignment: CGAGGYCACV -KAKGCCAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 27 Motif 27 Original Motif Original Motif Backward 1 8 0.0419581 Consensus sequence (original motif): CTGCCTKY Consensus sequence (reverse complement motif): KRAGGCAG Alignment: CTGCCTKY CTGGCYTY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 31 Motif 31 Original Motif Original Motif Forward 1 8 0.0519508 Consensus sequence (original motif): CTGWSCTC Consensus sequence (reverse complement motif): GAGSWCAG Alignment: CTGWSCTC CTGGCYTY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 Motif 11 Original Motif Original Motif Backward 1 8 0.0648749 Consensus sequence (original motif): CTGDGTTC Consensus sequence (reverse complement motif): GAACDCAG Alignment: CTGDGTTC CTGGCYTY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 9 Motif name: Motif 9 Consensus sequence (original motif): TTTWWAAA Consensus sequence (reverse complement motif): TTTWWAAA ************************************************************************ Best Matches for Motif ID 9 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 120 wtTTTwAAAaw Original Motif Original Motif Forward 2 8 0 Consensus sequence (original motif): HHTTTWAAADD Consensus sequence (reverse complement motif): DDTTTWAAAHH Alignment: HHTTTWAAADD -TTTWWAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Original Motif Original Motif Backward 1 8 0.0472911 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: DHATKTTTAHH ---TTTWWAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 62 TBP Reverse Complement Original Motif Forward 2 8 0.0552987 Consensus sequence (original motif): STATAAAWRVVVVBV Consensus sequence (reverse complement motif): VBVVVVMWTTTATAS Alignment: STATAAAWRVVVVBV -TTTWWAAA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 61 MEF2A Original Motif Original Motif Backward 2 8 0.0641646 Consensus sequence (original motif): CTATTTWTAG Consensus sequence (reverse complement motif): CTAWAAATAG Alignment: CTATTTWTAG -TTTWWAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 91 wtATTTTAww Reverse Complement Reverse Complement Forward 1 8 0.0724871 Consensus sequence (original motif): DHATTTTAWH Consensus sequence (reverse complement motif): HWTAAAATHD Alignment: HWTAAAATHD TTTWWAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 10 Motif name: Motif 10 Consensus sequence (original motif): HTACATA Consensus sequence (reverse complement motif): TATGTAD ************************************************************************ Best Matches for Motif ID 10 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 90 ymTACATAyw Original Motif Original Motif Backward 3 7 0 Consensus sequence (original motif): HHTACATABD Consensus sequence (reverse complement motif): DBTATGTAHH Alignment: HHTACATABD -HTACATA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 69 NKX3-1 Reverse Complement Reverse Complement Forward 1 7 0.0460238 Consensus sequence (original motif): ATACTTA Consensus sequence (reverse complement motif): TAAGTAT Alignment: TAAGTAT TATGTAD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 114 awAACAcAAwa Reverse Complement Reverse Complement Forward 4 7 0.0619118 Consensus sequence (original motif): DDAACACAADV Consensus sequence (reverse complement motif): BDTTGTGTTDD Alignment: BDTTGTGTTDD ---TATGTAD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 63 FOXL1 Original Motif Original Motif Backward 1 7 0.0663597 Consensus sequence (original motif): WHDAHATA Consensus sequence (reverse complement motif): TATDTDHW Alignment: WHDAHATA -HTACATA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Original Motif Reverse Complement Backward 4 7 0.0688346 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: HHTAAARATHD -HTACATA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 11 Motif name: Motif 11 Consensus sequence (original motif): CTGDGTTC Consensus sequence (reverse complement motif): GAACDCAG ************************************************************************ Best Matches for Motif ID 11 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 31 Motif 31 Original Motif Original Motif Forward 1 8 0.0558383 Consensus sequence (original motif): CTGWSCTC Consensus sequence (reverse complement motif): GAGSWCAG Alignment: CTGWSCTC CTGDGTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 12 Motif 12 Original Motif Reverse Complement Backward 1 8 0.0780567 Consensus sequence (original motif): GCACACAY Consensus sequence (reverse complement motif): MTGTGTGC Alignment: MTGTGTGC CTGDGTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 27 Motif 27 Reverse Complement Reverse Complement Forward 1 8 0.0849877 Consensus sequence (original motif): CTGCCTKY Consensus sequence (reverse complement motif): KRAGGCAG Alignment: KRAGGCAG GAACDCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Motif 8 Original Motif Original Motif Backward 1 8 0.0874939 Consensus sequence (original motif): CTGGCYTY Consensus sequence (reverse complement motif): KAKGCCAG Alignment: CTGGCYTY CTGDGTTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 114 awAACAcAAwa Reverse Complement Original Motif Forward 2 8 0.0916924 Consensus sequence (original motif): DDAACACAADV Consensus sequence (reverse complement motif): BDTTGTGTTDD Alignment: DDAACACAADV -GAACDCAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 12 Motif name: Motif 12 Consensus sequence (original motif): GCACACAY Consensus sequence (reverse complement motif): MTGTGTGC ************************************************************************ Best Matches for Motif ID 12 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Original Motif Original Motif Forward 1 8 0.0388776 Consensus sequence (original motif): ACACACAC Consensus sequence (reverse complement motif): GTGTGTGT Alignment: ACACACAC GCACACAY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 58 Motif 58 Original Motif Original Motif Backward 6 8 0.0509001 Consensus sequence (original motif): CACACACACACACA Consensus sequence (reverse complement motif): TGTGTGTGTGTGTG Alignment: CACACACACACACA -GCACACAY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 Motif 11 Original Motif Reverse Complement Backward 1 8 0.0543096 Consensus sequence (original motif): CTGDGTTC Consensus sequence (reverse complement motif): GAACDCAG Alignment: GAACDCAG GCACACAY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 126 yvTGCAGsCAcg Original Motif Original Motif Backward 2 8 0.0573852 Consensus sequence (original motif): BVTGCAGSCABV Consensus sequence (reverse complement motif): VBTGSCTGCAVB Alignment: BVTGCAGSCABV ---GCACACAY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 37 Motif 37 Original Motif Reverse Complement Backward 1 8 0.0626478 Consensus sequence (original motif): GYATGTGY Consensus sequence (reverse complement motif): KCACATKC Alignment: KCACATKC GCACACAY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 13 Motif name: Motif 13 Consensus sequence (original motif): GGAAGSAR Consensus sequence (reverse complement motif): MTSCTTCC ************************************************************************ Best Matches for Motif ID 13 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 17 Motif 17 Original Motif Original Motif Backward 1 8 0.0653924 Consensus sequence (original motif): GGGAGGRR Consensus sequence (reverse complement motif): MMCCTCCC Alignment: GGGAGGRR GGAAGSAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 116 dyCTGCyTCyc Reverse Complement Original Motif Forward 3 8 0.0796555 Consensus sequence (original motif): DHCTGCYTCHB Consensus sequence (reverse complement motif): BHGAKGCAGHH Alignment: DHCTGCYTCHB --MTSCTTCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 26 Motif 26 Original Motif Original Motif Backward 1 8 0.0803708 Consensus sequence (original motif): RGARGAAA Consensus sequence (reverse complement motif): TTTCKTCK Alignment: RGARGAAA GGAAGSAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 113 htCTGyKTCbt Reverse Complement Original Motif Forward 3 8 0.0857132 Consensus sequence (original motif): HBCTGYTTCBH Consensus sequence (reverse complement motif): HVGAAMCAGVH Alignment: HBCTGYTTCBH --MTSCTTCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 27 Motif 27 Original Motif Reverse Complement Forward 1 8 0.0948401 Consensus sequence (original motif): CTGCCTKY Consensus sequence (reverse complement motif): KRAGGCAG Alignment: KRAGGCAG GGAAGSAR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 14 Motif name: Motif 14 Consensus sequence (original motif): KAAAATR Consensus sequence (reverse complement motif): MATTTTY ************************************************************************ Best Matches for Motif ID 14 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 91 wtATTTTAww Original Motif Reverse Complement Backward 2 7 0.0107308 Consensus sequence (original motif): DHATTTTAWH Consensus sequence (reverse complement motif): HWTAAAATHD Alignment: HWTAAAATHD --KAAAATR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Reverse Complement Original Motif Forward 2 7 0.0228401 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: DHATKTTTAHH -MATTTTY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 44 Motif 44 Reverse Complement Reverse Complement Forward 1 7 0.0324742 Consensus sequence (original motif): AGAAATG Consensus sequence (reverse complement motif): CATTTCT Alignment: CATTTCT MATTTTY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 87 SOX9 Reverse Complement Reverse Complement Backward 2 7 0.0488777 Consensus sequence (original motif): DAACAATRG Consensus sequence (reverse complement motif): CMATTGTTH Alignment: CMATTGTTH -MATTTTY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 109 aaCAAAAACaa Reverse Complement Reverse Complement Forward 2 7 0.0510773 Consensus sequence (original motif): HHCAAAAACHH Consensus sequence (reverse complement motif): HHGTTTTTGHH Alignment: HHGTTTTTGHH -MATTTTY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 15 Motif name: Motif 15 Consensus sequence (original motif): AGCCCWGG Consensus sequence (reverse complement motif): CCWGGGCT ************************************************************************ Best Matches for Motif ID 15 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 51 Motif 51 Original Motif Original Motif Forward 1 8 0.0387232 Consensus sequence (original motif): AGAGCWGG Consensus sequence (reverse complement motif): CCWGCTCT Alignment: AGAGCWGG AGCCCWGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 104 cgCCCwGGScsg Original Motif Original Motif Forward 1 8 0.0422017 Consensus sequence (original motif): VDCCCWGGGCBB Consensus sequence (reverse complement motif): BBGCCCWGGGHV Alignment: VDCCCWGGGCBB AGCCCWGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 122 hsCCAGGCCTGGsr Reverse Complement Original Motif Backward 5 8 0.0482193 Consensus sequence (original motif): HVCCAGGCCTGGBD Consensus sequence (reverse complement motif): HBCCAGGCCTGGVD Alignment: HVCCAGGCCTGGBD --CCWGGGCT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 124 cswGGGCCCwsg Original Motif Reverse Complement Forward 5 8 0.0580747 Consensus sequence (original motif): VVWGGGCCCWBB Consensus sequence (reverse complement motif): BBWGGGCCCWVV Alignment: BBWGGGCCCWVV ----AGCCCWGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 127 rryCAGGGAyw Reverse Complement Original Motif Forward 3 8 0.0593634 Consensus sequence (original motif): DDYCAGGGAHD Consensus sequence (reverse complement motif): DHTCCCTGMDD Alignment: DDYCAGGGAHD --CCWGGGCT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 16 Motif name: Motif 16 Consensus sequence (original motif): GAGCCATC Consensus sequence (reverse complement motif): GATGGCTC ************************************************************************ Best Matches for Motif ID 16 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 121 ctGAGTCATCkb Original Motif Original Motif Backward 3 8 0.0217603 Consensus sequence (original motif): HDGAGTCATCDB Consensus sequence (reverse complement motif): BHGATGACTCDD Alignment: HDGAGTCATCDB --GAGCCATC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Motif 4 Reverse Complement Reverse Complement Backward 1 8 0.0643454 Consensus sequence (original motif): GAGRMAGR Consensus sequence (reverse complement motif): KCTRMCTC Alignment: KCTRMCTC GATGGCTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 116 dyCTGCyTCyc Original Motif Reverse Complement Backward 2 8 0.0716659 Consensus sequence (original motif): DHCTGCYTCHB Consensus sequence (reverse complement motif): BHGAKGCAGHH Alignment: BHGAKGCAGHH --GAGCCATC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 124 cswGGGCCCwsg Original Motif Reverse Complement Forward 4 8 0.0726629 Consensus sequence (original motif): VVWGGGCCCWBB Consensus sequence (reverse complement motif): BBWGGGCCCWVV Alignment: BBWGGGCCCWVV ---GAGCCATC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 97 sgArGCCACg Reverse Complement Reverse Complement Backward 3 8 0.0739514 Consensus sequence (original motif): SGARGCCACG Consensus sequence (reverse complement motif): CGTGGCKTCS Alignment: CGTGGCKTCS GATGGCTC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 17 Motif name: Motif 17 Consensus sequence (original motif): GGGAGGRR Consensus sequence (reverse complement motif): MMCCTCCC ************************************************************************ Best Matches for Motif ID 17 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 13 Motif 13 Original Motif Original Motif Backward 1 8 0.0153924 Consensus sequence (original motif): GGAAGSAR Consensus sequence (reverse complement motif): MTSCTTCC Alignment: GGAAGSAR GGGAGGRR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 111 ccCCmCaCCCCcc Reverse Complement Original Motif Backward 4 8 0.0180858 Consensus sequence (original motif): HBCCCCACCCCBH Consensus sequence (reverse complement motif): DBGGGGTGGGGBD Alignment: HBCCCCACCCCBH --MMCCTCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 103 csCCaGCTCCCgs Reverse Complement Original Motif Forward 4 8 0.0339203 Consensus sequence (original motif): BBCCAGCTCCCVB Consensus sequence (reverse complement motif): BVGGGAGCTGGBB Alignment: BBCCAGCTCCCVB ---MMCCTCCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 110 cmCCACACCcm Reverse Complement Original Motif Forward 1 8 0.0373897 Consensus sequence (original motif): HVCCACACCBV Consensus sequence (reverse complement motif): VBGGTGTGGBD Alignment: HVCCACACCBV MMCCTCCC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 99 graGGGGGArr Original Motif Original Motif Forward 4 8 0.0403428 Consensus sequence (original motif): DVAGGGGGADD Consensus sequence (reverse complement motif): HDTCCCCCTVH Alignment: DVAGGGGGADD ---GGGAGGRR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 18 Motif name: Motif 18 Consensus sequence (original motif): GRRAGAGA Consensus sequence (reverse complement motif): TCTCTMKC ************************************************************************ Best Matches for Motif ID 18 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Motif 4 Original Motif Original Motif Forward 1 8 0.0524813 Consensus sequence (original motif): GAGRMAGR Consensus sequence (reverse complement motif): KCTRMCTC Alignment: GAGRMAGR GRRAGAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 113 htCTGyKTCbt Original Motif Reverse Complement Forward 3 8 0.0543958 Consensus sequence (original motif): HBCTGYTTCBH Consensus sequence (reverse complement motif): HVGAAMCAGVH Alignment: HVGAAMCAGVH --GRRAGAGA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 17 Motif 17 Original Motif Original Motif Forward 1 8 0.0594801 Consensus sequence (original motif): GGGAGGRR Consensus sequence (reverse complement motif): MMCCTCCC Alignment: GGGAGGRR GRRAGAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 59 Motif 59 Reverse Complement Original Motif Forward 4 8 0.0602419 Consensus sequence (original motif): CTBCCTCHSYCYCC Consensus sequence (reverse complement motif): GGMGKSHGAGGBAG Alignment: CTBCCTCHSYCYCC ---TCTCTMKC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Original Motif Original Motif Backward 1 8 0.0675926 Consensus sequence (original motif): CACASASA Consensus sequence (reverse complement motif): TSTSTGTG Alignment: CACASASA GRRAGAGA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 19 Motif name: Motif 19 Consensus sequence (original motif): CCTGGARC Consensus sequence (reverse complement motif): GKTCCAGG ************************************************************************ Best Matches for Motif ID 19 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 42 Motif 42 Original Motif Original Motif Forward 1 8 0.0610815 Consensus sequence (original motif): CCYAGAAC Consensus sequence (reverse complement motif): GTTCTKGG Alignment: CCYAGAAC CCTGGARC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 84 NR1H2RXRA Reverse Complement Original Motif Forward 4 8 0.0814394 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC ---GKTCCAGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 20 Motif 20 Reverse Complement Original Motif Backward 1 8 0.0952394 Consensus sequence (original motif): ATTAMAGG Consensus sequence (reverse complement motif): CCTYTAAT Alignment: ATTAMAGG GKTCCAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 102 ssCkGGYCCCsg Reverse Complement Reverse Complement Backward 2 8 0.0966701 Consensus sequence (original motif): BBCKGGCCCCVV Consensus sequence (reverse complement motif): VVGGGGCCRGBB Alignment: VVGGGGCCRGBB ---GKTCCAGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 15 Motif 15 Original Motif Reverse Complement Backward 1 8 0.0972534 Consensus sequence (original motif): AGCCCWGG Consensus sequence (reverse complement motif): CCWGGGCT Alignment: CCWGGGCT CCTGGARC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 20 Motif name: Motif 20 Consensus sequence (original motif): ATTAMAGG Consensus sequence (reverse complement motif): CCTYTAAT ************************************************************************ Best Matches for Motif ID 20 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 84 NR1H2RXRA Reverse Complement Reverse Complement Forward 6 8 0.0699525 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: GTTGACCTTTGACCTTT -----CCTYTAAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 19 Motif 19 Reverse Complement Original Motif Backward 1 8 0.0931208 Consensus sequence (original motif): CCTGGARC Consensus sequence (reverse complement motif): GKTCCAGG Alignment: CCTGGARC CCTYTAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 66 Lhx3 Reverse Complement Reverse Complement Backward 3 8 0.0993275 Consensus sequence (original motif): WAATTAATTAWYB Consensus sequence (reverse complement motif): BMWTAATTAATTW Alignment: BMWTAATTAATTW ---CCTYTAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 83 NR2F1 Reverse Complement Original Motif Backward 4 8 0.100049 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: TGAMCTTTGMMCYT ---CCTYTAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Original Motif Reverse Complement Backward 4 8 0.101957 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: HHTAAARATHD ATTAMAGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 21 Motif name: Motif 21 Consensus sequence (original motif): AAACAAAC Consensus sequence (reverse complement motif): GTTTGTTT ************************************************************************ Best Matches for Motif ID 21 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Original Motif Original Motif Forward 5 8 0.0392428 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT Alignment: AADAAAAMAAAAAM ----AAACAAAC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Original Motif Reverse Complement Forward 1 8 0.0439051 Consensus sequence (original motif): KBDTRTTTRTTT Consensus sequence (reverse complement motif): AAAMAAAMADBY Alignment: AAAMAAAMADBY AAACAAAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 Motif 5 Original Motif Original Motif Forward 1 8 0.0458289 Consensus sequence (original motif): AAASAAAA Consensus sequence (reverse complement motif): TTTTSTTT Alignment: AAASAAAA AAACAAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 65 Foxd3 Original Motif Reverse Complement Forward 1 8 0.0463073 Consensus sequence (original motif): GAWTGTTTDTTT Consensus sequence (reverse complement motif): AAAHAAACAWTC Alignment: AAAHAAACAWTC AAACAAAC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 89 aaACAAAACaa Reverse Complement Reverse Complement Forward 4 8 0.0522284 Consensus sequence (original motif): AAACAAAACHV Consensus sequence (reverse complement motif): BHGTTTTGTTT Alignment: BHGTTTTGTTT ---GTTTGTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 22 Motif name: Motif 22 Consensus sequence (original motif): GTGGTGGY Consensus sequence (reverse complement motif): MCCACCAC ************************************************************************ Best Matches for Motif ID 22 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 Motif 6 Original Motif Reverse Complement Backward 1 8 0.0503283 Consensus sequence (original motif): CCCASCMC Consensus sequence (reverse complement motif): GYGSTGGG Alignment: GYGSTGGG GTGGTGGY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 115 ysCmAGCACwy Reverse Complement Original Motif Backward 3 8 0.0623778 Consensus sequence (original motif): HVCMAGCACHH Consensus sequence (reverse complement motif): DHGTGCTRGVH Alignment: HVCMAGCACHH -MCCACCAC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 93 cmCARCACTwr Reverse Complement Original Motif Backward 4 8 0.0725856 Consensus sequence (original motif): BHCAGCACTHV Consensus sequence (reverse complement motif): VHAGTGCTGHB Alignment: BHCAGCACTHV MCCACCAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 101 csCACCCCgg Reverse Complement Original Motif Forward 1 8 0.0756613 Consensus sequence (original motif): HVCACCCCBB Consensus sequence (reverse complement motif): BBGGGGTGVD Alignment: HVCACCCCBB MCCACCAC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 110 cmCCACACCcm Reverse Complement Original Motif Backward 3 8 0.0823897 Consensus sequence (original motif): HVCCACACCBV Consensus sequence (reverse complement motif): VBGGTGTGGBD Alignment: HVCCACACCBV -MCCACCAC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 23 Motif name: Motif 23 Consensus sequence (original motif): MTSTGTA Consensus sequence (reverse complement motif): TACASAR ************************************************************************ Best Matches for Motif ID 23 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Original Motif Reverse Complement Backward 2 7 0.0172404 Consensus sequence (original motif): CACASASA Consensus sequence (reverse complement motif): TSTSTGTG Alignment: TSTSTGTG MTSTGTA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 90 ymTACATAyw Reverse Complement Original Motif Backward 2 7 0.0191193 Consensus sequence (original motif): HHTACATABD Consensus sequence (reverse complement motif): DBTATGTAHH Alignment: HHTACATABD --TACASAR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 12 Motif 12 Reverse Complement Original Motif Forward 1 7 0.03188 Consensus sequence (original motif): GCACACAY Consensus sequence (reverse complement motif): MTGTGTGC Alignment: GCACACAY TACASAR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 114 awAACAcAAwa Reverse Complement Original Motif Forward 3 7 0.0346685 Consensus sequence (original motif): DDAACACAADV Consensus sequence (reverse complement motif): BDTTGTGTTDD Alignment: DDAACACAADV --TACASAR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 75 FOXF2 Reverse Complement Original Motif Backward 2 7 0.0372723 Consensus sequence (original motif): BHADSGTAAACAAD Consensus sequence (reverse complement motif): DTTGTTTACSBTBB Alignment: BHADSGTAAACAAD ------TACASAR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 24 Motif name: Motif 24 Consensus sequence (original motif): CACGB Consensus sequence (reverse complement motif): BCGTG ************************************************************************ Best Matches for Motif ID 24 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 56 Motif 56 Reverse Complement Reverse Complement Forward 2 5 0 Consensus sequence (original motif): CACGGA Consensus sequence (reverse complement motif): TCCGTG Alignment: TCCGTG -BCGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 115 ysCmAGCACwy Reverse Complement Reverse Complement Forward 1 5 0.0186397 Consensus sequence (original motif): HVCMAGCACHH Consensus sequence (reverse complement motif): DHGTGCTRGVH Alignment: DHGTGCTRGVH BCGTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 107 crCGyGCRcg Reverse Complement Original Motif Forward 2 5 0.019278 Consensus sequence (original motif): CGCGTGCACG Consensus sequence (reverse complement motif): CGTGCACGCG Alignment: CGCGTGCACG -BCGTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 12 Motif 12 Original Motif Original Motif Forward 4 5 0.0246242 Consensus sequence (original motif): GCACACAY Consensus sequence (reverse complement motif): MTGTGTGC Alignment: GCACACAY ---CACGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Original Motif Original Motif Forward 1 5 0.0336642 Consensus sequence (original motif): CACASASA Consensus sequence (reverse complement motif): TSTSTGTG Alignment: CACASASA CACGB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 25 Motif name: Motif 25 Consensus sequence (original motif): TTTAWW Consensus sequence (reverse complement motif): WWTAAA ************************************************************************ Best Matches for Motif ID 25 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 91 wtATTTTAww Reverse Complement Reverse Complement Forward 1 6 0.0116421 Consensus sequence (original motif): DHATTTTAWH Consensus sequence (reverse complement motif): HWTAAAATHD Alignment: HWTAAAATHD WWTAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Original Motif Original Motif Backward 1 6 0.0118254 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: DHATKTTTAHH -----TTTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 70 Foxq1 Original Motif Original Motif Backward 1 6 0.0158082 Consensus sequence (original motif): HATTGTTTATW Consensus sequence (reverse complement motif): WATAAACAATH Alignment: HATTGTTTATW -----TTTAWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 3 Motif 3 Reverse Complement Original Motif Forward 1 6 0.0300892 Consensus sequence (original motif): AWATAMA Consensus sequence (reverse complement motif): TYTATWT Alignment: AWATAMA WWTAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 55 Motif 55 Original Motif Original Motif Backward 2 6 0.0307675 Consensus sequence (original motif): TTTAAAA Consensus sequence (reverse complement motif): TTTTAAA Alignment: TTTAAAA TTTAWW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 26 Motif name: Motif 26 Consensus sequence (original motif): RGARGAAA Consensus sequence (reverse complement motif): TTTCKTCK ************************************************************************ Best Matches for Motif ID 26 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 71 Evi1 Reverse Complement Reverse Complement Backward 4 8 0.0776207 Consensus sequence (original motif): AAGAYAAGATAABA Consensus sequence (reverse complement motif): TBTTATCTTMTCTT Alignment: TBTTATCTTMTCTT ---TTTCKTCK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 13 Motif 13 Original Motif Original Motif Forward 1 8 0.0795772 Consensus sequence (original motif): GGAAGSAR Consensus sequence (reverse complement motif): MTSCTTCC Alignment: GGAAGSAR RGARGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 Motif 5 Original Motif Original Motif Backward 1 8 0.0833075 Consensus sequence (original motif): AAASAAAA Consensus sequence (reverse complement motif): TTTTSTTT Alignment: AAASAAAA RGARGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 89 aaACAAAACaa Reverse Complement Reverse Complement Forward 4 8 0.087026 Consensus sequence (original motif): AAACAAAACHV Consensus sequence (reverse complement motif): BHGTTTTGTTT Alignment: BHGTTTTGTTT ---TTTCKTCK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Reverse Complement Reverse Complement Backward 4 8 0.0876612 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT Alignment: YTTTTTRTTTTDTT ---TTTCKTCK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 27 Motif name: Motif 27 Consensus sequence (original motif): CTGCCTKY Consensus sequence (reverse complement motif): KRAGGCAG ************************************************************************ Best Matches for Motif ID 27 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 39 Motif 39 Original Motif Reverse Complement Forward 1 8 0.0247901 Consensus sequence (original motif): ACAGMCAG Consensus sequence (reverse complement motif): CTGYCTGT Alignment: CTGYCTGT CTGCCTKY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 116 dyCTGCyTCyc Reverse Complement Reverse Complement Backward 3 8 0.0249073 Consensus sequence (original motif): DHCTGCYTCHB Consensus sequence (reverse complement motif): BHGAKGCAGHH Alignment: BHGAKGCAGHH -KRAGGCAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Motif 8 Original Motif Original Motif Backward 1 8 0.0407877 Consensus sequence (original motif): CTGGCYTY Consensus sequence (reverse complement motif): KAKGCCAG Alignment: CTGGCYTY CTGCCTKY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 126 yvTGCAGsCAcg Original Motif Reverse Complement Forward 2 8 0.0601303 Consensus sequence (original motif): BVTGCAGSCABV Consensus sequence (reverse complement motif): VBTGSCTGCAVB Alignment: VBTGSCTGCAVB -CTGCCTKY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 Motif 11 Reverse Complement Reverse Complement Forward 1 8 0.0611983 Consensus sequence (original motif): CTGDGTTC Consensus sequence (reverse complement motif): GAACDCAG Alignment: GAACDCAG KRAGGCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 28 Motif name: Motif 28 Consensus sequence (original motif): AVAGAAA Consensus sequence (reverse complement motif): TTTCTVT ************************************************************************ Best Matches for Motif ID 28 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 Motif 5 Original Motif Original Motif Backward 2 7 0.034392 Consensus sequence (original motif): AAASAAAA Consensus sequence (reverse complement motif): TTTTSTTT Alignment: AAASAAAA AVAGAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 49 Motif 49 Original Motif Original Motif Forward 1 7 0.0458576 Consensus sequence (original motif): AGATAAAR Consensus sequence (reverse complement motif): KTTTATCT Alignment: AGATAAAR AVAGAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 21 Motif 21 Original Motif Original Motif Backward 2 7 0.0461542 Consensus sequence (original motif): AAACAAAC Consensus sequence (reverse complement motif): GTTTGTTT Alignment: AAACAAAC AVAGAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 18 Motif 18 Reverse Complement Reverse Complement Backward 2 7 0.047492 Consensus sequence (original motif): GRRAGAGA Consensus sequence (reverse complement motif): TCTCTMKC Alignment: TCTCTMKC TTTCTVT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 89 aaACAAAACaa Original Motif Original Motif Backward 5 7 0.055017 Consensus sequence (original motif): AAACAAAACHV Consensus sequence (reverse complement motif): BHGTTTTGTTT Alignment: AAACAAAACHV AVAGAAA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 29 Motif name: Motif 29 Consensus sequence (original motif): CCMGCCCC Consensus sequence (reverse complement motif): GGGGCYGG ************************************************************************ Best Matches for Motif ID 29 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 103 csCCaGCTCCCgs Reverse Complement Reverse Complement Forward 4 8 0.0420068 Consensus sequence (original motif): BBCCAGCTCCCVB Consensus sequence (reverse complement motif): BVGGGAGCTGGBB Alignment: BVGGGAGCTGGBB ---GGGGCYGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Original Motif Original Motif Backward 3 8 0.0430311 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: BBCCAGCTCMBD --CCMGCCCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 102 ssCkGGYCCCsg Reverse Complement Reverse Complement Backward 3 8 0.0462922 Consensus sequence (original motif): BBCKGGCCCCVV Consensus sequence (reverse complement motif): VVGGGGCCRGBB Alignment: VVGGGGCCRGBB --GGGGCYGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 111 ccCCmCaCCCCcc Original Motif Original Motif Backward 3 8 0.051245 Consensus sequence (original motif): HBCCCCACCCCBH Consensus sequence (reverse complement motif): DBGGGGTGGGGBD Alignment: HBCCCCACCCCBH ---CCMGCCCC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 115 ysCmAGCACwy Original Motif Original Motif Backward 2 8 0.0556862 Consensus sequence (original motif): HVCMAGCACHH Consensus sequence (reverse complement motif): DHGTGCTRGVH Alignment: HVCMAGCACHH --CCMGCCCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 30 Motif name: Motif 30 Consensus sequence (original motif): CAGGARGM Consensus sequence (reverse complement motif): YCMTCCTG ************************************************************************ Best Matches for Motif ID 30 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 47 Motif 47 Reverse Complement Original Motif Backward 1 8 0.0890875 Consensus sequence (original motif): KGCTGCTG Consensus sequence (reverse complement motif): CAGCAGCR Alignment: KGCTGCTG YCMTCCTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Motif 4 Original Motif Original Motif Backward 1 8 0.0957719 Consensus sequence (original motif): GAGRMAGR Consensus sequence (reverse complement motif): KCTRMCTC Alignment: GAGRMAGR CAGGARGM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 98 myyCCCACmTGCmyr Reverse Complement Original Motif Forward 4 8 0.0969866 Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD Alignment: HBCCCCACMTGCMHV ---YCMTCCTG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 127 rryCAGGGAyw Original Motif Original Motif Forward 4 8 0.0975352 Consensus sequence (original motif): DDYCAGGGAHD Consensus sequence (reverse complement motif): DHTCCCTGMDD Alignment: DDYCAGGGAHD ---CAGGARGM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 99 graGGGGGArr Original Motif Original Motif Forward 2 8 0.0989909 Consensus sequence (original motif): DVAGGGGGADD Consensus sequence (reverse complement motif): HDTCCCCCTVH Alignment: DVAGGGGGADD -CAGGARGM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 31 Motif name: Motif 31 Consensus sequence (original motif): CTGWSCTC Consensus sequence (reverse complement motif): GAGSWCAG ************************************************************************ Best Matches for Motif ID 31 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 Motif 11 Reverse Complement Reverse Complement Backward 1 8 0.023129 Consensus sequence (original motif): CTGDGTTC Consensus sequence (reverse complement motif): GAACDCAG Alignment: GAACDCAG GAGSWCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 8 Motif 8 Reverse Complement Reverse Complement Backward 1 8 0.0418605 Consensus sequence (original motif): CTGGCYTY Consensus sequence (reverse complement motif): KAKGCCAG Alignment: KAKGCCAG GAGSWCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 92 cgAKGyCAcg Reverse Complement Original Motif Forward 2 8 0.0464751 Consensus sequence (original motif): CGAGGYCACV Consensus sequence (reverse complement motif): VGTGMCCTCG Alignment: CGAGGYCACV -GAGSWCAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 84 NR1H2RXRA Reverse Complement Original Motif Backward 2 8 0.0568298 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC --------GAGSWCAG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Original Motif Reverse Complement Forward 2 8 0.0705619 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: HBYGAGCTGGBB -CTGWSCTC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 32 Motif name: Motif 32 Consensus sequence (original motif): AVATGGC Consensus sequence (reverse complement motif): GCCATVT ************************************************************************ Best Matches for Motif ID 32 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 124 cswGGGCCCwsg Original Motif Original Motif Backward 6 7 0.0595251 Consensus sequence (original motif): VVWGGGCCCWBB Consensus sequence (reverse complement motif): BBWGGGCCCWVV Alignment: VVWGGGCCCWBB AVATGGC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 121 ctGAGTCATCkb Reverse Complement Original Motif Backward 2 7 0.0676952 Consensus sequence (original motif): HDGAGTCATCDB Consensus sequence (reverse complement motif): BHGATGACTCDD Alignment: HDGAGTCATCDB ----GCCATVT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 84 NR1H2RXRA Original Motif Original Motif Forward 8 7 0.0701366 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC -------AVATGGC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Reverse Complement Original Motif Backward 5 7 0.0704204 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: BBCCAGCTCMBD -GCCATVT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 98 myyCCCACmTGCmyr Original Motif Original Motif Backward 3 7 0.0736077 Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD Alignment: HBCCCCACMTGCMHV ------AVATGGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 33 Motif name: Motif 33 Consensus sequence (original motif): CMTTTCC Consensus sequence (reverse complement motif): GGAAARG ************************************************************************ Best Matches for Motif ID 33 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 46 Motif 46 Original Motif Reverse Complement Backward 1 7 0.0542683 Consensus sequence (original motif): GGAAASA Consensus sequence (reverse complement motif): TSTTTCC Alignment: TSTTTCC CMTTTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 44 Motif 44 Original Motif Reverse Complement Forward 1 7 0.0667064 Consensus sequence (original motif): AGAAATG Consensus sequence (reverse complement motif): CATTTCT Alignment: CATTTCT CMTTTCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 88 ygCTyTTCsg Reverse Complement Reverse Complement Backward 3 7 0.0693505 Consensus sequence (original motif): HDCTYTTCGB Consensus sequence (reverse complement motif): BCGAAMAGHH Alignment: BCGAAMAGHH -GGAAARG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 38 Motif 38 Reverse Complement Reverse Complement Backward 2 7 0.0734352 Consensus sequence (original motif): CCTYCTCC Consensus sequence (reverse complement motif): GGAGMAGG Alignment: GGAGMAGG GGAAARG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 13 Motif 13 Reverse Complement Original Motif Backward 1 7 0.0861393 Consensus sequence (original motif): GGAAGSAR Consensus sequence (reverse complement motif): MTSCTTCC Alignment: GGAAGSAR -GGAAARG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 34 Motif name: Motif 34 Consensus sequence (original motif): ATATTTA Consensus sequence (reverse complement motif): TAAATAT ************************************************************************ Best Matches for Motif ID 34 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Original Motif Original Motif Backward 3 7 0.0294375 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: DHATKTTTAHH --ATATTTA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 82 HNF1B Reverse Complement Reverse Complement Forward 3 7 0.033217 Consensus sequence (original motif): TTAATRWTTAAC Consensus sequence (reverse complement motif): GTTAAWKATTAA Alignment: GTTAAWKATTAA --TAAATAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 90 ymTACATAyw Original Motif Reverse Complement Forward 2 7 0.0399459 Consensus sequence (original motif): HHTACATABD Consensus sequence (reverse complement motif): DBTATGTAHH Alignment: DBTATGTAHH -ATATTTA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 61 MEF2A Reverse Complement Reverse Complement Backward 1 7 0.0440271 Consensus sequence (original motif): CTATTTWTAG Consensus sequence (reverse complement motif): CTAWAAATAG Alignment: CTAWAAATAG ---TAAATAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 69 NKX3-1 Original Motif Original Motif Backward 1 7 0.0453202 Consensus sequence (original motif): ATACTTA Consensus sequence (reverse complement motif): TAAGTAT Alignment: ATACTTA ATATTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 35 Motif name: Motif 35 Consensus sequence (original motif): KGCTGGS Consensus sequence (reverse complement motif): SCCAGCR ************************************************************************ Best Matches for Motif ID 35 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 115 ysCmAGCACwy Original Motif Reverse Complement Forward 4 7 0.0239923 Consensus sequence (original motif): HVCMAGCACHH Consensus sequence (reverse complement motif): DHGTGCTRGVH Alignment: DHGTGCTRGVH ---KGCTGGS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 Motif 6 Reverse Complement Original Motif Forward 2 7 0.0288353 Consensus sequence (original motif): CCCASCMC Consensus sequence (reverse complement motif): GYGSTGGG Alignment: CCCASCMC -SCCAGCR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Original Motif Reverse Complement Backward 2 7 0.0386119 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: HBYGAGCTGGBB ----KGCTGGS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 93 cmCARCACTwr Reverse Complement Original Motif Backward 5 7 0.0467269 Consensus sequence (original motif): BHCAGCACTHV Consensus sequence (reverse complement motif): VHAGTGCTGHB Alignment: BHCAGCACTHV SCCAGCR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 22 Motif 22 Original Motif Original Motif Forward 2 7 0.04839 Consensus sequence (original motif): GTGGTGGY Consensus sequence (reverse complement motif): MCCACCAC Alignment: GTGGTGGY -KGCTGGS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 36 Motif name: Motif 36 Consensus sequence (original motif): CATGGTGG Consensus sequence (reverse complement motif): CCACCATG ************************************************************************ Best Matches for Motif ID 36 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 98 myyCCCACmTGCmyr Original Motif Reverse Complement Backward 4 8 0.0987507 Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD Alignment: VDRGCAYGTGGGGVD ----CATGGTGG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 30 Motif 30 Reverse Complement Reverse Complement Forward 1 8 0.100683 Consensus sequence (original motif): CAGGARGM Consensus sequence (reverse complement motif): YCMTCCTG Alignment: YCMTCCTG CCACCATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 115 ysCmAGCACwy Original Motif Reverse Complement Forward 2 8 0.106759 Consensus sequence (original motif): HVCMAGCACHH Consensus sequence (reverse complement motif): DHGTGCTRGVH Alignment: DHGTGCTRGVH -CATGGTGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 118 yrCACATGCATGTGyr Original Motif Reverse Complement Backward 5 8 0.106836 Consensus sequence (original motif): HVCACATGCATGTGBD Consensus sequence (reverse complement motif): DVCACATGCATGTGBH Alignment: DVCACATGCATGTGBH ----CATGGTGG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 101 csCACCCCgg Original Motif Reverse Complement Forward 2 8 0.10804 Consensus sequence (original motif): HVCACCCCBB Consensus sequence (reverse complement motif): BBGGGGTGVD Alignment: BBGGGGTGVD -CATGGTGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 37 Motif name: Motif 37 Consensus sequence (original motif): GYATGTGY Consensus sequence (reverse complement motif): KCACATKC ************************************************************************ Best Matches for Motif ID 37 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 118 yrCACATGCATGTGyr Original Motif Original Motif Forward 8 8 0.0125979 Consensus sequence (original motif): HVCACATGCATGTGBD Consensus sequence (reverse complement motif): DVCACATGCATGTGBH Alignment: HVCACATGCATGTGBD -------GYATGTGY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 98 myyCCCACmTGCmyr Original Motif Reverse Complement Backward 5 8 0.035887 Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD Alignment: VDRGCAYGTGGGGVD ---GYATGTGY---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Reverse Complement Original Motif Forward 1 8 0.0415984 Consensus sequence (original motif): ACACACAC Consensus sequence (reverse complement motif): GTGTGTGT Alignment: ACACACAC KCACATKC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 58 Motif 58 Original Motif Reverse Complement Forward 2 8 0.0521491 Consensus sequence (original motif): CACACACACACACA Consensus sequence (reverse complement motif): TGTGTGTGTGTGTG Alignment: TGTGTGTGTGTGTG -GYATGTGY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 90 ymTACATAyw Original Motif Reverse Complement Forward 2 8 0.0544369 Consensus sequence (original motif): HHTACATABD Consensus sequence (reverse complement motif): DBTATGTAHH Alignment: DBTATGTAHH -GYATGTGY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 38 Motif name: Motif 38 Consensus sequence (original motif): CCTYCTCC Consensus sequence (reverse complement motif): GGAGMAGG ************************************************************************ Best Matches for Motif ID 38 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 51 Motif 51 Reverse Complement Original Motif Forward 1 8 0.0329729 Consensus sequence (original motif): AGAGCWGG Consensus sequence (reverse complement motif): CCWGCTCT Alignment: AGAGCWGG GGAGMAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 88 ygCTyTTCsg Reverse Complement Reverse Complement Backward 2 8 0.0476921 Consensus sequence (original motif): HDCTYTTCGB Consensus sequence (reverse complement motif): BCGAAMAGHH Alignment: BCGAAMAGHH -GGAGMAGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 29 Motif 29 Reverse Complement Reverse Complement Forward 1 8 0.0493297 Consensus sequence (original motif): CCMGCCCC Consensus sequence (reverse complement motif): GGGGCYGG Alignment: GGGGCYGG GGAGMAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 103 csCCaGCTCCCgs Reverse Complement Reverse Complement Forward 4 8 0.0526885 Consensus sequence (original motif): BBCCAGCTCCCVB Consensus sequence (reverse complement motif): BVGGGAGCTGGBB Alignment: BVGGGAGCTGGBB ---GGAGMAGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Reverse Complement Reverse Complement Forward 3 8 0.0576001 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: HBYGAGCTGGBB --GGAGMAGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 39 Motif name: Motif 39 Consensus sequence (original motif): ACAGMCAG Consensus sequence (reverse complement motif): CTGYCTGT ************************************************************************ Best Matches for Motif ID 39 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 27 Motif 27 Original Motif Reverse Complement Forward 1 8 0.0307023 Consensus sequence (original motif): CTGCCTKY Consensus sequence (reverse complement motif): KRAGGCAG Alignment: KRAGGCAG ACAGMCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Original Motif Original Motif Forward 1 8 0.0593235 Consensus sequence (original motif): ACACACAC Consensus sequence (reverse complement motif): GTGTGTGT Alignment: ACACACAC ACAGMCAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 58 Motif 58 Reverse Complement Reverse Complement Forward 6 8 0.0634902 Consensus sequence (original motif): CACACACACACACA Consensus sequence (reverse complement motif): TGTGTGTGTGTGTG Alignment: TGTGTGTGTGTGTG -----CTGYCTGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 116 dyCTGCyTCyc Reverse Complement Original Motif Forward 3 8 0.0653685 Consensus sequence (original motif): DHCTGCYTCHB Consensus sequence (reverse complement motif): BHGAKGCAGHH Alignment: DHCTGCYTCHB --CTGYCTGT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 113 htCTGyKTCbt Original Motif Reverse Complement Forward 2 8 0.0674965 Consensus sequence (original motif): HBCTGYTTCBH Consensus sequence (reverse complement motif): HVGAAMCAGVH Alignment: HVGAAMCAGVH -ACAGMCAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 40 Motif name: Motif 40 Consensus sequence (original motif): CCACASC Consensus sequence (reverse complement motif): GSTGTGG ************************************************************************ Best Matches for Motif ID 40 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 110 cmCCACACCcm Reverse Complement Reverse Complement Forward 3 7 0.0381642 Consensus sequence (original motif): HVCCACACCBV Consensus sequence (reverse complement motif): VBGGTGTGGBD Alignment: VBGGTGTGGBD --GSTGTGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 111 ccCCmCaCCCCcc Original Motif Original Motif Backward 5 7 0.0665887 Consensus sequence (original motif): HBCCCCACCCCBH Consensus sequence (reverse complement motif): DBGGGGTGGGGBD Alignment: HBCCCCACCCCBH --CCACASC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 22 Motif 22 Reverse Complement Original Motif Backward 1 7 0.0714286 Consensus sequence (original motif): GTGGTGGY Consensus sequence (reverse complement motif): MCCACCAC Alignment: GTGGTGGY -GSTGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 Motif 6 Reverse Complement Reverse Complement Backward 2 7 0.0745048 Consensus sequence (original motif): CCCASCMC Consensus sequence (reverse complement motif): GYGSTGGG Alignment: GYGSTGGG GSTGTGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 12 Motif 12 Reverse Complement Reverse Complement Backward 1 7 0.0820312 Consensus sequence (original motif): GCACACAY Consensus sequence (reverse complement motif): MTGTGTGC Alignment: MTGTGTGC -GSTGTGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 41 Motif name: Motif 41 Consensus sequence (original motif): CTCAGARA Consensus sequence (reverse complement motif): TKTCTGAG ************************************************************************ Best Matches for Motif ID 41 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Original Motif Original Motif Forward 1 8 0.0342598 Consensus sequence (original motif): CACASASA Consensus sequence (reverse complement motif): TSTSTGTG Alignment: CACASASA CTCAGARA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 117 yaCATAYACay Reverse Complement Reverse Complement Forward 4 8 0.0601983 Consensus sequence (original motif): HVCATACACAH Consensus sequence (reverse complement motif): DTGTGTATGBD Alignment: DTGTGTATGBD ---TKTCTGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 42 Motif 42 Reverse Complement Reverse Complement Forward 1 8 0.0645699 Consensus sequence (original motif): CCYAGAAC Consensus sequence (reverse complement motif): GTTCTKGG Alignment: GTTCTKGG TKTCTGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 127 rryCAGGGAyw Original Motif Original Motif Backward 3 8 0.0655288 Consensus sequence (original motif): DDYCAGGGAHD Consensus sequence (reverse complement motif): DHTCCCTGMDD Alignment: DDYCAGGGAHD -CTCAGARA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 58 Motif 58 Reverse Complement Reverse Complement Forward 7 8 0.0667371 Consensus sequence (original motif): CACACACACACACA Consensus sequence (reverse complement motif): TGTGTGTGTGTGTG Alignment: TGTGTGTGTGTGTG ------TKTCTGAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 42 Motif name: Motif 42 Consensus sequence (original motif): CCYAGAAC Consensus sequence (reverse complement motif): GTTCTKGG ************************************************************************ Best Matches for Motif ID 42 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 19 Motif 19 Original Motif Original Motif Backward 1 8 0.0610815 Consensus sequence (original motif): CCTGGARC Consensus sequence (reverse complement motif): GKTCCAGG Alignment: CCTGGARC CCYAGAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 115 ysCmAGCACwy Original Motif Original Motif Backward 3 8 0.0690213 Consensus sequence (original motif): HVCMAGCACHH Consensus sequence (reverse complement motif): DHGTGCTRGVH Alignment: HVCMAGCACHH -CCYAGAAC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 6 Motif 6 Reverse Complement Reverse Complement Forward 1 8 0.0735374 Consensus sequence (original motif): CCCASCMC Consensus sequence (reverse complement motif): GYGSTGGG Alignment: GYGSTGGG GTTCTKGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 109 aaCAAAAACaa Reverse Complement Reverse Complement Forward 3 8 0.0769138 Consensus sequence (original motif): HHCAAAAACHH Consensus sequence (reverse complement motif): HHGTTTTTGHH Alignment: HHGTTTTTGHH --GTTCTKGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 41 Motif 41 Original Motif Original Motif Backward 1 8 0.0911976 Consensus sequence (original motif): CTCAGARA Consensus sequence (reverse complement motif): TKTCTGAG Alignment: CTCAGARA CCYAGAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 43 Motif name: Motif 43 Consensus sequence (original motif): CTCTGCCY Consensus sequence (reverse complement motif): KGGCAGAG ************************************************************************ Best Matches for Motif ID 43 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 84 NR1H2RXRA Original Motif Reverse Complement Forward 7 8 0.0750223 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: GTTGACCTTTGACCTTT ------CTCTGCCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 59 Motif 59 Original Motif Original Motif Forward 5 8 0.0776916 Consensus sequence (original motif): CTBCCTCHSYCYCC Consensus sequence (reverse complement motif): GGMGKSHGAGGBAG Alignment: CTBCCTCHSYCYCC ----CTCTGCCY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 116 dyCTGCyTCyc Original Motif Original Motif Forward 1 8 0.0799777 Consensus sequence (original motif): DHCTGCYTCHB Consensus sequence (reverse complement motif): BHGAKGCAGHH Alignment: DHCTGCYTCHB CTCTGCCY--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 88 ygCTyTTCsg Original Motif Original Motif Backward 1 8 0.0904749 Consensus sequence (original motif): HDCTYTTCGB Consensus sequence (reverse complement motif): BCGAAMAGHH Alignment: HDCTYTTCGB --CTCTGCCY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 83 NR2F1 Original Motif Original Motif Forward 5 8 0.0905992 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: TGAMCTTTGMMCYT ----CTCTGCCY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 44 Motif name: Motif 44 Consensus sequence (original motif): AGAAATG Consensus sequence (reverse complement motif): CATTTCT ************************************************************************ Best Matches for Motif ID 44 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 14 Motif 14 Reverse Complement Reverse Complement Forward 1 7 0.0447866 Consensus sequence (original motif): KAAAATR Consensus sequence (reverse complement motif): MATTTTY Alignment: MATTTTY CATTTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Reverse Complement Original Motif Backward 4 7 0.0513825 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: DHATKTTTAHH -CATTTCT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 33 Motif 33 Original Motif Reverse Complement Forward 1 7 0.0527225 Consensus sequence (original motif): CMTTTCC Consensus sequence (reverse complement motif): GGAAARG Alignment: GGAAARG AGAAATG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 61 MEF2A Reverse Complement Original Motif Forward 2 7 0.0603872 Consensus sequence (original motif): CTATTTWTAG Consensus sequence (reverse complement motif): CTAWAAATAG Alignment: CTATTTWTAG -CATTTCT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 71 Evi1 Reverse Complement Reverse Complement Backward 2 7 0.0740469 Consensus sequence (original motif): AAGAYAAGATAABA Consensus sequence (reverse complement motif): TBTTATCTTMTCTT Alignment: TBTTATCTTMTCTT ------CATTTCT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 45 Motif name: Motif 45 Consensus sequence (original motif): ATTATTAW Consensus sequence (reverse complement motif): WTAATAAT ************************************************************************ Best Matches for Motif ID 45 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 100 wwTAATAAww Original Motif Reverse Complement Forward 2 8 0.0312128 Consensus sequence (original motif): DHTAATAADD Consensus sequence (reverse complement motif): DDTTATTAHD Alignment: DDTTATTAHD -ATTATTAW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Reverse Complement Reverse Complement Forward 2 8 0.0503721 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: HHTAAARATHD -WTAATAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 68 HNF1A Original Motif Reverse Complement Backward 3 8 0.0585066 Consensus sequence (original motif): GGTTAATDATTAMC Consensus sequence (reverse complement motif): GYTAATDATTAACC Alignment: GYTAATDATTAACC ----ATTATTAW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 82 HNF1B Reverse Complement Original Motif Backward 5 8 0.0743796 Consensus sequence (original motif): TTAATRWTTAAC Consensus sequence (reverse complement motif): GTTAAWKATTAA Alignment: TTAATRWTTAAC WTAATAAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 66 Lhx3 Reverse Complement Original Motif Forward 1 8 0.0744439 Consensus sequence (original motif): WAATTAATTAWYB Consensus sequence (reverse complement motif): BMWTAATTAATTW Alignment: WAATTAATTAWYB WTAATAAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 46 Motif name: Motif 46 Consensus sequence (original motif): GGAAASA Consensus sequence (reverse complement motif): TSTTTCC ************************************************************************ Best Matches for Motif ID 46 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 13 Motif 13 Original Motif Original Motif Forward 1 7 0.0428804 Consensus sequence (original motif): GGAAGSAR Consensus sequence (reverse complement motif): MTSCTTCC Alignment: GGAAGSAR GGAAASA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 33 Motif 33 Original Motif Reverse Complement Backward 1 7 0.0542683 Consensus sequence (original motif): CMTTTCC Consensus sequence (reverse complement motif): GGAAARG Alignment: GGAAARG GGAAASA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 75 FOXF2 Original Motif Original Motif Forward 6 7 0.0636714 Consensus sequence (original motif): BHADSGTAAACAAD Consensus sequence (reverse complement motif): DTTGTTTACSBTBB Alignment: BHADSGTAAACAAD -----GGAAASA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 86 FOXO3 Original Motif Original Motif Forward 2 7 0.0652994 Consensus sequence (original motif): KGTAAACA Consensus sequence (reverse complement motif): TGTTTACR Alignment: KGTAAACA -GGAAASA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 113 htCTGyKTCbt Reverse Complement Original Motif Forward 4 7 0.0693025 Consensus sequence (original motif): HBCTGYTTCBH Consensus sequence (reverse complement motif): HVGAAMCAGVH Alignment: HBCTGYTTCBH ---TSTTTCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 47 Motif name: Motif 47 Consensus sequence (original motif): KGCTGCTG Consensus sequence (reverse complement motif): CAGCAGCR ************************************************************************ Best Matches for Motif ID 47 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 105 ccGCAGCCss Original Motif Reverse Complement Backward 1 8 0.0572744 Consensus sequence (original motif): VCGCAGCCBB Consensus sequence (reverse complement motif): BBGGCTGCGV Alignment: BBGGCTGCGV --KGCTGCTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 115 ysCmAGCACwy Original Motif Reverse Complement Forward 1 8 0.0621107 Consensus sequence (original motif): HVCMAGCACHH Consensus sequence (reverse complement motif): DHGTGCTRGVH Alignment: DHGTGCTRGVH KGCTGCTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 93 cmCARCACTwr Original Motif Reverse Complement Forward 2 8 0.0664426 Consensus sequence (original motif): BHCAGCACTHV Consensus sequence (reverse complement motif): VHAGTGCTGHB Alignment: VHAGTGCTGHB -KGCTGCTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 30 Motif 30 Original Motif Reverse Complement Forward 1 8 0.0671183 Consensus sequence (original motif): CAGGARGM Consensus sequence (reverse complement motif): YCMTCCTG Alignment: YCMTCCTG KGCTGCTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 116 dyCTGCyTCyc Original Motif Original Motif Backward 4 8 0.0696714 Consensus sequence (original motif): DHCTGCYTCHB Consensus sequence (reverse complement motif): BHGAKGCAGHH Alignment: DHCTGCYTCHB KGCTGCTG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 48 Motif name: Motif 48 Consensus sequence (original motif): ACACWG Consensus sequence (reverse complement motif): CWGTGT ************************************************************************ Best Matches for Motif ID 48 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 12 Motif 12 Reverse Complement Reverse Complement Backward 3 6 0.0450356 Consensus sequence (original motif): GCACACAY Consensus sequence (reverse complement motif): MTGTGTGC Alignment: MTGTGTGC CWGTGT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 11 Motif 11 Reverse Complement Original Motif Backward 1 6 0.0534035 Consensus sequence (original motif): CTGDGTTC Consensus sequence (reverse complement motif): GAACDCAG Alignment: CTGDGTTC --CWGTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 23 Motif 23 Reverse Complement Original Motif Forward 2 6 0.0615752 Consensus sequence (original motif): MTSTGTA Consensus sequence (reverse complement motif): TACASAR Alignment: MTSTGTA -CWGTGT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Original Motif Original Motif Forward 2 6 0.065723 Consensus sequence (original motif): CACASASA Consensus sequence (reverse complement motif): TSTSTGTG Alignment: CACASASA -ACACWG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 117 yaCATAYACay Reverse Complement Reverse Complement Backward 6 6 0.0663715 Consensus sequence (original motif): HVCATACACAH Consensus sequence (reverse complement motif): DTGTGTATGBD Alignment: DTGTGTATGBD CWGTGT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 49 Motif name: Motif 49 Consensus sequence (original motif): AGATAAAR Consensus sequence (reverse complement motif): KTTTATCT ************************************************************************ Best Matches for Motif ID 49 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 71 Evi1 Reverse Complement Reverse Complement Forward 1 8 0.0168651 Consensus sequence (original motif): AAGAYAAGATAABA Consensus sequence (reverse complement motif): TBTTATCTTMTCTT Alignment: TBTTATCTTMTCTT KTTTATCT------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Reverse Complement Original Motif Backward 1 8 0.0451069 Consensus sequence (original motif): KBDTRTTTRTTT Consensus sequence (reverse complement motif): AAAMAAAMADBY Alignment: KBDTRTTTRTTT ----KTTTATCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Reverse Complement Reverse Complement Backward 5 8 0.0469577 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT Alignment: YTTTTTRTTTTDTT --KTTTATCT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 21 Motif 21 Reverse Complement Reverse Complement Backward 1 8 0.0471231 Consensus sequence (original motif): AAACAAAC Consensus sequence (reverse complement motif): GTTTGTTT Alignment: GTTTGTTT KTTTATCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 84 NR1H2RXRA Reverse Complement Reverse Complement Backward 10 8 0.0483731 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: GTTGACCTTTGACCTTT KTTTATCT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 50 Motif name: Motif 50 Consensus sequence (original motif): GAAGAGCA Consensus sequence (reverse complement motif): TGCTCTTC ************************************************************************ Best Matches for Motif ID 50 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 88 ygCTyTTCsg Reverse Complement Original Motif Backward 3 8 0.0206791 Consensus sequence (original motif): HDCTYTTCGB Consensus sequence (reverse complement motif): BCGAAMAGHH Alignment: HDCTYTTCGB TGCTCTTC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 71 Evi1 Reverse Complement Reverse Complement Forward 3 8 0.0485428 Consensus sequence (original motif): AAGAYAAGATAABA Consensus sequence (reverse complement motif): TBTTATCTTMTCTT Alignment: TBTTATCTTMTCTT --TGCTCTTC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 83 NR2F1 Original Motif Reverse Complement Backward 1 8 0.0680446 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: AKGYYCAAAGRTCA ------GAAGAGCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 5 Motif 5 Original Motif Original Motif Backward 1 8 0.0707433 Consensus sequence (original motif): AAASAAAA Consensus sequence (reverse complement motif): TTTTSTTT Alignment: AAASAAAA GAAGAGCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 114 awAACAcAAwa Original Motif Original Motif Forward 2 8 0.0709876 Consensus sequence (original motif): DDAACACAADV Consensus sequence (reverse complement motif): BDTTGTGTTDD Alignment: DDAACACAADV -GAAGAGCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 51 Motif name: Motif 51 Consensus sequence (original motif): AGAGCWGG Consensus sequence (reverse complement motif): CCWGCTCT ************************************************************************ Best Matches for Motif ID 51 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Reverse Complement Original Motif Backward 3 8 0.0568763 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: BBCCAGCTCMBD --CCWGCTCT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 38 Motif 38 Reverse Complement Original Motif Forward 1 8 0.0627656 Consensus sequence (original motif): CCTYCTCC Consensus sequence (reverse complement motif): GGAGMAGG Alignment: CCTYCTCC CCWGCTCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 15 Motif 15 Original Motif Original Motif Backward 1 8 0.0634208 Consensus sequence (original motif): AGCCCWGG Consensus sequence (reverse complement motif): CCWGGGCT Alignment: AGCCCWGG AGAGCWGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 103 csCCaGCTCCCgs Original Motif Reverse Complement Forward 4 8 0.0769435 Consensus sequence (original motif): BBCCAGCTCCCVB Consensus sequence (reverse complement motif): BVGGGAGCTGGBB Alignment: BVGGGAGCTGGBB ---AGAGCWGG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 93 cmCARCACTwr Reverse Complement Original Motif Backward 3 8 0.0785511 Consensus sequence (original motif): BHCAGCACTHV Consensus sequence (reverse complement motif): VHAGTGCTGHB Alignment: BHCAGCACTHV -CCWGCTCT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 52 Motif name: Motif 52 Consensus sequence (original motif): AGVCAGG Consensus sequence (reverse complement motif): CCTGVCT ************************************************************************ Best Matches for Motif ID 52 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Motif 4 Original Motif Original Motif Forward 2 7 0.0426638 Consensus sequence (original motif): GAGRMAGR Consensus sequence (reverse complement motif): KCTRMCTC Alignment: GAGRMAGR -AGVCAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 116 dyCTGCyTCyc Reverse Complement Original Motif Backward 4 7 0.0621766 Consensus sequence (original motif): DHCTGCYTCHB Consensus sequence (reverse complement motif): BHGAKGCAGHH Alignment: DHCTGCYTCHB -CCTGVCT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 127 rryCAGGGAyw Reverse Complement Reverse Complement Forward 5 7 0.0705096 Consensus sequence (original motif): DDYCAGGGAHD Consensus sequence (reverse complement motif): DHTCCCTGMDD Alignment: DHTCCCTGMDD ----CCTGVCT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 113 htCTGyKTCbt Original Motif Reverse Complement Forward 4 7 0.0753705 Consensus sequence (original motif): HBCTGYTTCBH Consensus sequence (reverse complement motif): HVGAAMCAGVH Alignment: HVGAAMCAGVH ---AGVCAGG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 126 yvTGCAGsCAcg Original Motif Original Motif Backward 1 7 0.077286 Consensus sequence (original motif): BVTGCAGSCABV Consensus sequence (reverse complement motif): VBTGSCTGCAVB Alignment: BVTGCAGSCABV -----AGVCAGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 53 Motif name: Motif 53 Consensus sequence (original motif): TSTGTR Consensus sequence (reverse complement motif): MACASA ************************************************************************ Best Matches for Motif ID 53 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Original Motif Reverse Complement Forward 1 6 0.00228262 Consensus sequence (original motif): CACASASA Consensus sequence (reverse complement motif): TSTSTGTG Alignment: TSTSTGTG TSTGTR-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 114 awAACAcAAwa Reverse Complement Original Motif Backward 4 6 0.0122629 Consensus sequence (original motif): DDAACACAADV Consensus sequence (reverse complement motif): BDTTGTGTTDD Alignment: DDAACACAADV --MACASA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 23 Motif 23 Original Motif Original Motif Forward 2 6 0.0137023 Consensus sequence (original motif): MTSTGTA Consensus sequence (reverse complement motif): TACASAR Alignment: MTSTGTA -TSTGTR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 2 Motif 2 Original Motif Reverse Complement Backward 2 6 0.0252334 Consensus sequence (original motif): ACACACAC Consensus sequence (reverse complement motif): GTGTGTGT Alignment: GTGTGTGT -TSTGTR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 58 Motif 58 Reverse Complement Original Motif Forward 1 6 0.025412 Consensus sequence (original motif): CACACACACACACA Consensus sequence (reverse complement motif): TGTGTGTGTGTGTG Alignment: CACACACACACACA MACASA-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 54 Motif name: Motif 54 Consensus sequence (original motif): RGAAA Consensus sequence (reverse complement motif): TTTCK ************************************************************************ Best Matches for Motif ID 54 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 26 Motif 26 Reverse Complement Reverse Complement Forward 1 5 0 Consensus sequence (original motif): RGARGAAA Consensus sequence (reverse complement motif): TTTCKTCK Alignment: TTTCKTCK TTTCK--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 28 Motif 28 Original Motif Original Motif Forward 3 5 0.0199405 Consensus sequence (original motif): AVAGAAA Consensus sequence (reverse complement motif): TTTCTVT Alignment: AVAGAAA --RGAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 33 Motif 33 Reverse Complement Original Motif Backward 3 5 0.0284722 Consensus sequence (original motif): CMTTTCC Consensus sequence (reverse complement motif): GGAAARG Alignment: CMTTTCC TTTCK-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 46 Motif 46 Original Motif Original Motif Backward 3 5 0.0284722 Consensus sequence (original motif): GGAAASA Consensus sequence (reverse complement motif): TSTTTCC Alignment: GGAAASA RGAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 44 Motif 44 Reverse Complement Reverse Complement Forward 3 5 0.0339244 Consensus sequence (original motif): AGAAATG Consensus sequence (reverse complement motif): CATTTCT Alignment: CATTTCT --TTTCK ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 55 Motif name: Motif 55 Consensus sequence (original motif): TTTAAAA Consensus sequence (reverse complement motif): TTTTAAA ************************************************************************ Best Matches for Motif ID 55 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 120 wtTTTwAAAaw Original Motif Original Motif Forward 3 7 0.00286145 Consensus sequence (original motif): HHTTTWAAADD Consensus sequence (reverse complement motif): DDTTTWAAAHH Alignment: HHTTTWAAADD --TTTAAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 9 Motif 9 Original Motif Reverse Complement Backward 1 7 0.0142562 Consensus sequence (original motif): TTTWWAAA Consensus sequence (reverse complement motif): TTTWWAAA Alignment: TTTWWAAA -TTTAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 91 wtATTTTAww Original Motif Reverse Complement Forward 1 7 0.036821 Consensus sequence (original motif): DHATTTTAWH Consensus sequence (reverse complement motif): HWTAAAATHD Alignment: HWTAAAATHD TTTAAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Reverse Complement Original Motif Backward 1 7 0.0428268 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: DHATKTTTAHH ----TTTTAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 62 TBP Reverse Complement Reverse Complement Forward 8 7 0.058454 Consensus sequence (original motif): STATAAAWRVVVVBV Consensus sequence (reverse complement motif): VBVVVVMWTTTATAS Alignment: VBVVVVMWTTTATAS -------TTTTAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 56 Motif name: Motif 56 Consensus sequence (original motif): CACGGA Consensus sequence (reverse complement motif): TCCGTG ************************************************************************ Best Matches for Motif ID 56 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 127 rryCAGGGAyw Original Motif Original Motif Backward 3 6 0.0151346 Consensus sequence (original motif): DDYCAGGGAHD Consensus sequence (reverse complement motif): DHTCCCTGMDD Alignment: DDYCAGGGAHD ---CACGGA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 7 Motif 7 Original Motif Original Motif Forward 1 6 0.0281094 Consensus sequence (original motif): CACASASA Consensus sequence (reverse complement motif): TSTSTGTG Alignment: CACASASA CACGGA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 41 Motif 41 Reverse Complement Reverse Complement Backward 1 6 0.051968 Consensus sequence (original motif): CTCAGARA Consensus sequence (reverse complement motif): TKTCTGAG Alignment: TKTCTGAG --TCCGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 19 Motif 19 Original Motif Original Motif Forward 1 6 0.051968 Consensus sequence (original motif): CCTGGARC Consensus sequence (reverse complement motif): GKTCCAGG Alignment: CCTGGARC CACGGA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 53 Motif 53 Reverse Complement Original Motif Forward 1 6 0.0528198 Consensus sequence (original motif): TSTGTR Consensus sequence (reverse complement motif): MACASA Alignment: TSTGTR TCCGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 57 Motif name: Motif 57 Consensus sequence (original motif): SAGGAA Consensus sequence (reverse complement motif): TTCCTS ************************************************************************ Best Matches for Motif ID 57 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 30 Motif 30 Original Motif Original Motif Backward 3 6 0.0409967 Consensus sequence (original motif): CAGGARGM Consensus sequence (reverse complement motif): YCMTCCTG Alignment: CAGGARGM SAGGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 26 Motif 26 Original Motif Original Motif Forward 2 6 0.0466104 Consensus sequence (original motif): RGARGAAA Consensus sequence (reverse complement motif): TTTCKTCK Alignment: RGARGAAA -SAGGAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 28 Motif 28 Reverse Complement Reverse Complement Backward 2 6 0.0548389 Consensus sequence (original motif): AVAGAAA Consensus sequence (reverse complement motif): TTTCTVT Alignment: TTTCTVT TTCCTS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 27 Motif 27 Original Motif Reverse Complement Forward 2 6 0.0627861 Consensus sequence (original motif): CTGCCTKY Consensus sequence (reverse complement motif): KRAGGCAG Alignment: KRAGGCAG -SAGGAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 4 Motif 4 Original Motif Original Motif Forward 1 6 0.0659124 Consensus sequence (original motif): GAGRMAGR Consensus sequence (reverse complement motif): KCTRMCTC Alignment: GAGRMAGR SAGGAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 58 Motif name: Motif 58 Consensus sequence (original motif): CACACACACACACA Consensus sequence (reverse complement motif): TGTGTGTGTGTGTG ************************************************************************ Best Matches for Motif ID 58 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 118 yrCACATGCATGTGyr Original Motif Original Motif Forward 3 14 0.0942589 Consensus sequence (original motif): HVCACATGCATGTGBD Consensus sequence (reverse complement motif): DVCACATGCATGTGBH Alignment: HVCACATGCATGTGBD --CACACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 59 Motif 59 Reverse Complement Reverse Complement Forward 1 14 0.0950431 Consensus sequence (original motif): CTBCCTCHSYCYCC Consensus sequence (reverse complement motif): GGMGKSHGAGGBAG Alignment: GGMGKSHGAGGBAG TGTGTGTGTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 98 myyCCCACmTGCmyr Original Motif Original Motif Backward 1 14 0.0967648 Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD Alignment: HBCCCCACMTGCMHV -CACACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 111 ccCCmCaCCCCcc Original Motif Original Motif Backward 1 13 0.595051 Consensus sequence (original motif): HBCCCCACCCCBH Consensus sequence (reverse complement motif): DBGGGGTGGGGBD Alignment: -HBCCCCACCCCBH CACACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Original Motif Original Motif Backward 2 13 0.597407 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT Alignment: -AADAAAAMAAAAAM CACACACACACACA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 59 Motif name: Motif 59 Consensus sequence (original motif): CTBCCTCHSYCYCC Consensus sequence (reverse complement motif): GGMGKSHGAGGBAG ************************************************************************ Best Matches for Motif ID 59 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Original Motif Original Motif Forward 13 14 0.0440476 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC ------------CTBCCTCHSYCYCC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 98 myyCCCACmTGCmyr Original Motif Original Motif Backward 1 14 0.064469 Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD Alignment: HBCCCCACMTGCMHV -CTBCCTCHSYCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 58 Motif 58 Reverse Complement Reverse Complement Backward 1 14 0.0727936 Consensus sequence (original motif): CACACACACACACA Consensus sequence (reverse complement motif): TGTGTGTGTGTGTG Alignment: TGTGTGTGTGTGTG GGMGKSHGAGGBAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 111 ccCCmCaCCCCcc Original Motif Original Motif Backward 1 13 0.53768 Consensus sequence (original motif): HBCCCCACCCCBH Consensus sequence (reverse complement motif): DBGGGGTGGGGBD Alignment: -HBCCCCACCCCBH CTBCCTCHSYCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 103 csCCaGCTCCCgs Reverse Complement Reverse Complement Backward 1 13 0.558794 Consensus sequence (original motif): BBCCAGCTCCCVB Consensus sequence (reverse complement motif): BVGGGAGCTGGBB Alignment: -BVGGGAGCTGGBB GGMGKSHGAGGBAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 60 Motif name: Motif 60 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT ************************************************************************ Best Matches for Motif ID 60 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 71 Evi1 Original Motif Original Motif Forward 1 14 0.0695286 Consensus sequence (original motif): AAGAYAAGATAABA Consensus sequence (reverse complement motif): TBTTATCTTMTCTT Alignment: AAGAYAAGATAABA AADAAAAMAAAAAM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Original Motif Original Motif Backward 15 14 0.0795461 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC --AADAAAAMAAAAAM-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 62 TBP Original Motif Original Motif Backward 1 14 0.0901534 Consensus sequence (original motif): STATAAAWRVVVVBV Consensus sequence (reverse complement motif): VBVVVVMWTTTATAS Alignment: STATAAAWRVVVVBV -AADAAAAMAAAAAM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 125 wwTAATwwATTAww Original Motif Original Motif Forward 1 14 0.0954049 Consensus sequence (original motif): DDTAATWWATTAHH Consensus sequence (reverse complement motif): HHTAATWWATTADD Alignment: DDTAATWWATTAHH AADAAAAMAAAAAM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 75 FOXF2 Original Motif Original Motif Forward 1 14 0.0959909 Consensus sequence (original motif): BHADSGTAAACAAD Consensus sequence (reverse complement motif): DTTGTTTACSBTBB Alignment: BHADSGTAAACAAD AADAAAAMAAAAAM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 61 Motif name: MEF2A Consensus sequence (original motif): CTATTTWTAG Consensus sequence (reverse complement motif): CTAWAAATAG ************************************************************************ Best Matches for Motif ID 61 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 62 TBP Reverse Complement Original Motif Backward 6 10 0.0368263 Consensus sequence (original motif): STATAAAWRVVVVBV Consensus sequence (reverse complement motif): VBVVVVMWTTTATAS Alignment: STATAAAWRVVVVBV CTAWAAATAG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Reverse Complement Reverse Complement Forward 2 10 0.0401238 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: HHTAAARATHD -CTAWAAATAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Original Motif Original Motif Forward 3 10 0.056188 Consensus sequence (original motif): KBDTRTTTRTTT Consensus sequence (reverse complement motif): AAAMAAAMADBY Alignment: KBDTRTTTRTTT --CTATTTWTAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 68 HNF1A Original Motif Original Motif Forward 3 10 0.0684894 Consensus sequence (original motif): GGTTAATDATTAMC Consensus sequence (reverse complement motif): GYTAATDATTAACC Alignment: GGTTAATDATTAMC --CTATTTWTAG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 91 wtATTTTAww Reverse Complement Reverse Complement Backward 1 10 0.0714984 Consensus sequence (original motif): DHATTTTAWH Consensus sequence (reverse complement motif): HWTAAAATHD Alignment: HWTAAAATHD CTAWAAATAG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 62 Motif name: TBP Consensus sequence (original motif): STATAAAWRVVVVBV Consensus sequence (reverse complement motif): VBVVVVMWTTTATAS ************************************************************************ Best Matches for Motif ID 62 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Original Motif Original Motif Forward 1 15 0.050528 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC STATAAAWRVVVVBV--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 125 wwTAATwwATTAww Reverse Complement Original Motif Forward 1 14 0.581919 Consensus sequence (original motif): DDTAATWWATTAHH Consensus sequence (reverse complement motif): HHTAATWWATTADD Alignment: DDTAATWWATTAHH- VBVVVVMWTTTATAS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 68 HNF1A Reverse Complement Reverse Complement Backward 1 14 0.583461 Consensus sequence (original motif): GGTTAATDATTAMC Consensus sequence (reverse complement motif): GYTAATDATTAACC Alignment: -GYTAATDATTAACC VBVVVVMWTTTATAS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Original Motif Original Motif Backward 1 14 0.58354 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT Alignment: -AADAAAAMAAAAAM STATAAAWRVVVVBV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 98 myyCCCACmTGCmyr Reverse Complement Original Motif Backward 2 14 0.587864 Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD Alignment: -HBCCCCACMTGCMHV VBVVVVMWTTTATAS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 63 Motif name: FOXL1 Consensus sequence (original motif): WHDAHATA Consensus sequence (reverse complement motif): TATDTDHW ************************************************************************ Best Matches for Motif ID 63 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 75 FOXF2 Original Motif Original Motif Backward 7 8 0.0287322 Consensus sequence (original motif): BHADSGTAAACAAD Consensus sequence (reverse complement motif): DTTGTTTACSBTBB Alignment: BHADSGTAAACAAD WHDAHATA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 90 ymTACATAyw Reverse Complement Reverse Complement Forward 3 8 0.0294054 Consensus sequence (original motif): HHTACATABD Consensus sequence (reverse complement motif): DBTATGTAHH Alignment: DBTATGTAHH --TATDTDHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 74 FOXC1 Original Motif Original Motif Backward 1 8 0.036287 Consensus sequence (original motif): VBHVHGTA Consensus sequence (reverse complement motif): TACHBHBV Alignment: VBHVHGTA WHDAHATA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 61 MEF2A Original Motif Reverse Complement Backward 2 8 0.0377453 Consensus sequence (original motif): CTATTTWTAG Consensus sequence (reverse complement motif): CTAWAAATAG Alignment: CTAWAAATAG -WHDAHATA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 76 Sox2 Reverse Complement Original Motif Backward 1 8 0.0399271 Consensus sequence (original motif): CCWTTGTYATGCAAA Consensus sequence (reverse complement motif): TTTGCATMACAAWGG Alignment: CCWTTGTYATGCAAA -------TATDTDHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 64 Motif name: ARID3A Consensus sequence (original motif): ATYAAA Consensus sequence (reverse complement motif): TTTMAT ************************************************************************ Best Matches for Motif ID 64 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 106 wtAATTAAtw Original Motif Original Motif Forward 4 6 0.0114914 Consensus sequence (original motif): DTAATTAATH Consensus sequence (reverse complement motif): HATTAATTAD Alignment: DTAATTAATH ---ATYAAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 20 Motif 20 Original Motif Original Motif Forward 1 6 0.015396 Consensus sequence (original motif): ATTAMAGG Consensus sequence (reverse complement motif): CCTYTAAT Alignment: ATTAMAGG ATYAAA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 66 Lhx3 Reverse Complement Reverse Complement Forward 6 6 0.0225727 Consensus sequence (original motif): WAATTAATTAWYB Consensus sequence (reverse complement motif): BMWTAATTAATTW Alignment: BMWTAATTAATTW -----TTTMAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 49 Motif 49 Original Motif Original Motif Backward 1 6 0.0340365 Consensus sequence (original motif): AGATAAAR Consensus sequence (reverse complement motif): KTTTATCT Alignment: AGATAAAR --ATYAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 25 Motif 25 Original Motif Reverse Complement Backward 1 6 0.0368439 Consensus sequence (original motif): TTTAWW Consensus sequence (reverse complement motif): WWTAAA Alignment: WWTAAA ATYAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 65 Motif name: Foxd3 Consensus sequence (original motif): GAWTGTTTDTTT Consensus sequence (reverse complement motif): AAAHAAACAWTC ************************************************************************ Best Matches for Motif ID 65 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Reverse Complement Reverse Complement Forward 1 12 0.00335618 Consensus sequence (original motif): KBDTRTTTRTTT Consensus sequence (reverse complement motif): AAAMAAAMADBY Alignment: AAAMAAAMADBY AAAHAAACAWTC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Original Motif Reverse Complement Forward 1 12 0.0177558 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT Alignment: YTTTTTRTTTTDTT GAWTGTTTDTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 66 Lhx3 Original Motif Reverse Complement Forward 1 12 0.0424677 Consensus sequence (original motif): WAATTAATTAWYB Consensus sequence (reverse complement motif): BMWTAATTAATTW Alignment: BMWTAATTAATTW GAWTGTTTDTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Reverse Complement Original Motif Backward 16 12 0.0493847 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC ---AAAHAAACAWTC--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 68 HNF1A Original Motif Original Motif Backward 3 12 0.0526352 Consensus sequence (original motif): GGTTAATDATTAMC Consensus sequence (reverse complement motif): GYTAATDATTAACC Alignment: GGTTAATDATTAMC GAWTGTTTDTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 66 Motif name: Lhx3 Consensus sequence (original motif): WAATTAATTAWYB Consensus sequence (reverse complement motif): BMWTAATTAATTW ************************************************************************ Best Matches for Motif ID 66 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 68 HNF1A Original Motif Reverse Complement Backward 1 13 0.0814534 Consensus sequence (original motif): GGTTAATDATTAMC Consensus sequence (reverse complement motif): GYTAATDATTAACC Alignment: GYTAATDATTAACC -WAATTAATTAWYB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 62 TBP Reverse Complement Reverse Complement Forward 3 13 0.100645 Consensus sequence (original motif): STATAAAWRVVVVBV Consensus sequence (reverse complement motif): VBVVVVMWTTTATAS Alignment: VBVVVVMWTTTATAS --BMWTAATTAATTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 71 Evi1 Reverse Complement Reverse Complement Backward 2 13 0.102129 Consensus sequence (original motif): AAGAYAAGATAABA Consensus sequence (reverse complement motif): TBTTATCTTMTCTT Alignment: TBTTATCTTMTCTT BMWTAATTAATTW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 125 wwTAATwwATTAww Original Motif Original Motif Backward 1 13 0.102843 Consensus sequence (original motif): DDTAATWWATTAHH Consensus sequence (reverse complement motif): HHTAATWWATTADD Alignment: DDTAATWWATTAHH -WAATTAATTAWYB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Reverse Complement Original Motif Forward 2 13 0.106545 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT Alignment: AADAAAAMAAAAAM -BMWTAATTAATTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 67 Motif name: FOXI1 Consensus sequence (original motif): KBDTRTTTRTTT Consensus sequence (reverse complement motif): AAAMAAAMADBY ************************************************************************ Best Matches for Motif ID 67 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 65 Foxd3 Reverse Complement Reverse Complement Backward 1 12 0.0238603 Consensus sequence (original motif): GAWTGTTTDTTT Consensus sequence (reverse complement motif): AAAHAAACAWTC Alignment: AAAHAAACAWTC AAAMAAAMADBY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Original Motif Reverse Complement Forward 1 12 0.035724 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT Alignment: YTTTTTRTTTTDTT KBDTRTTTRTTT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 66 Lhx3 Reverse Complement Original Motif Forward 1 12 0.0611272 Consensus sequence (original motif): WAATTAATTAWYB Consensus sequence (reverse complement motif): BMWTAATTAATTW Alignment: WAATTAATTAWYB AAAMAAAMADBY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Reverse Complement Original Motif Forward 3 12 0.0613545 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC --AAAMAAAMADBY---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 62 TBP Original Motif Reverse Complement Backward 2 12 0.0644285 Consensus sequence (original motif): STATAAAWRVVVVBV Consensus sequence (reverse complement motif): VBVVVVMWTTTATAS Alignment: VBVVVVMWTTTATAS --KBDTRTTTRTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 68 Motif name: HNF1A Consensus sequence (original motif): GGTTAATDATTAMC Consensus sequence (reverse complement motif): GYTAATDATTAACC ************************************************************************ Best Matches for Motif ID 68 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 125 wwTAATwwATTAww Original Motif Original Motif Backward 1 14 0.0430148 Consensus sequence (original motif): DDTAATWWATTAHH Consensus sequence (reverse complement motif): HHTAATWWATTADD Alignment: DDTAATWWATTAHH GGTTAATDATTAMC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 84 NR1H2RXRA Original Motif Original Motif Backward 1 14 0.0678001 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC ---GGTTAATDATTAMC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Reverse Complement Reverse Complement Forward 17 14 0.0691946 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM ----------------GYTAATDATTAACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 62 TBP Reverse Complement Reverse Complement Backward 1 14 0.0722834 Consensus sequence (original motif): STATAAAWRVVVVBV Consensus sequence (reverse complement motif): VBVVVVMWTTTATAS Alignment: VBVVVVMWTTTATAS -GYTAATDATTAACC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 76 Sox2 Original Motif Original Motif Backward 2 14 0.077247 Consensus sequence (original motif): CCWTTGTYATGCAAA Consensus sequence (reverse complement motif): TTTGCATMACAAWGG Alignment: CCWTTGTYATGCAAA GGTTAATDATTAMC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 69 Motif name: NKX3-1 Consensus sequence (original motif): ATACTTA Consensus sequence (reverse complement motif): TAAGTAT ************************************************************************ Best Matches for Motif ID 69 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 90 ymTACATAyw Original Motif Original Motif Forward 2 7 0 Consensus sequence (original motif): HHTACATABD Consensus sequence (reverse complement motif): DBTATGTAHH Alignment: HHTACATABD -ATACTTA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 66 Lhx3 Reverse Complement Original Motif Backward 5 7 0.000214177 Consensus sequence (original motif): WAATTAATTAWYB Consensus sequence (reverse complement motif): BMWTAATTAATTW Alignment: WAATTAATTAWYB --TAAGTAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 10 Motif 10 Reverse Complement Reverse Complement Backward 1 7 0.00274846 Consensus sequence (original motif): HTACATA Consensus sequence (reverse complement motif): TATGTAD Alignment: TATGTAD TAAGTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 34 Motif 34 Original Motif Original Motif Backward 1 7 0.00883486 Consensus sequence (original motif): ATATTTA Consensus sequence (reverse complement motif): TAAATAT Alignment: ATATTTA ATACTTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 106 wtAATTAAtw Reverse Complement Reverse Complement Forward 4 7 0.0100679 Consensus sequence (original motif): DTAATTAATH Consensus sequence (reverse complement motif): HATTAATTAD Alignment: HATTAATTAD ---TAAGTAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 70 Motif name: Foxq1 Consensus sequence (original motif): HATTGTTTATW Consensus sequence (reverse complement motif): WATAAACAATH ************************************************************************ Best Matches for Motif ID 70 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Original Motif Original Motif Backward 2 11 0.0247019 Consensus sequence (original motif): KBDTRTTTRTTT Consensus sequence (reverse complement motif): AAAMAAAMADBY Alignment: KBDTRTTTRTTT HATTGTTTATW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Original Motif Original Motif Backward 1 11 0.0341803 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: DHATKTTTAHH HATTGTTTATW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 65 Foxd3 Original Motif Original Motif Forward 1 11 0.0354607 Consensus sequence (original motif): GAWTGTTTDTTT Consensus sequence (reverse complement motif): AAAHAAACAWTC Alignment: GAWTGTTTDTTT HATTGTTTATW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Original Motif Reverse Complement Backward 3 11 0.0611511 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT Alignment: YTTTTTRTTTTDTT -HATTGTTTATW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 114 awAACAcAAwa Original Motif Reverse Complement Backward 1 11 0.0621125 Consensus sequence (original motif): DDAACACAADV Consensus sequence (reverse complement motif): BDTTGTGTTDD Alignment: BDTTGTGTTDD HATTGTTTATW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 71 Motif name: Evi1 Consensus sequence (original motif): AAGAYAAGATAABA Consensus sequence (reverse complement motif): TBTTATCTTMTCTT ************************************************************************ Best Matches for Motif ID 71 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Original Motif Original Motif Forward 1 14 0.0493882 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT Alignment: AADAAAAMAAAAAM AAGAYAAGATAABA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 125 wwTAATwwATTAww Original Motif Original Motif Backward 1 14 0.072295 Consensus sequence (original motif): DDTAATWWATTAHH Consensus sequence (reverse complement motif): HHTAATWWATTADD Alignment: DDTAATWWATTAHH AAGAYAAGATAABA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Original Motif Original Motif Forward 5 14 0.0763889 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC ----AAGAYAAGATAABA------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 66 Lhx3 Reverse Complement Reverse Complement Forward 1 13 0.564942 Consensus sequence (original motif): WAATTAATTAWYB Consensus sequence (reverse complement motif): BMWTAATTAATTW Alignment: BMWTAATTAATTW- TBTTATCTTMTCTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 75 FOXF2 Reverse Complement Reverse Complement Backward 2 13 0.568274 Consensus sequence (original motif): BHADSGTAAACAAD Consensus sequence (reverse complement motif): DTTGTTTACSBTBB Alignment: -DTTGTTTACSBTBB TBTTATCTTMTCTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 72 Motif name: Nkx2-5 Consensus sequence (original motif): WTAAKTG Consensus sequence (reverse complement motif): CARTTAW ************************************************************************ Best Matches for Motif ID 72 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 66 Lhx3 Reverse Complement Original Motif Forward 7 7 0.0204974 Consensus sequence (original motif): WAATTAATTAWYB Consensus sequence (reverse complement motif): BMWTAATTAATTW Alignment: WAATTAATTAWYB ------CARTTAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 125 wwTAATwwATTAww Original Motif Reverse Complement Forward 2 7 0.021519 Consensus sequence (original motif): DDTAATWWATTAHH Consensus sequence (reverse complement motif): HHTAATWWATTADD Alignment: HHTAATWWATTADD -WTAAKTG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 106 wtAATTAAtw Original Motif Reverse Complement Forward 3 7 0.0245852 Consensus sequence (original motif): DTAATTAATH Consensus sequence (reverse complement motif): HATTAATTAD Alignment: HATTAATTAD --WTAAKTG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 68 HNF1A Original Motif Original Motif Backward 6 7 0.0356285 Consensus sequence (original motif): GGTTAATDATTAMC Consensus sequence (reverse complement motif): GYTAATDATTAACC Alignment: GGTTAATDATTAMC --WTAAKTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 1 45 Motif 45 Original Motif Reverse Complement Forward 2 7 0.0367872 Consensus sequence (original motif): ATTATTAW Consensus sequence (reverse complement motif): WTAATAAT Alignment: WTAATAAT -WTAAKTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 73 Motif name: SRY Consensus sequence (original motif): BDWAACAAT Consensus sequence (reverse complement motif): ATTGTTWDB ************************************************************************ Best Matches for Motif ID 73 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 76 Sox2 Original Motif Reverse Complement Forward 5 9 0.0274533 Consensus sequence (original motif): CCWTTGTYATGCAAA Consensus sequence (reverse complement motif): TTTGCATMACAAWGG Alignment: TTTGCATMACAAWGG ----BDWAACAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 65 Foxd3 Original Motif Reverse Complement Forward 2 9 0.0332484 Consensus sequence (original motif): GAWTGTTTDTTT Consensus sequence (reverse complement motif): AAAHAAACAWTC Alignment: AAAHAAACAWTC -BDWAACAAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 75 FOXF2 Reverse Complement Reverse Complement Forward 1 9 0.0379812 Consensus sequence (original motif): BHADSGTAAACAAD Consensus sequence (reverse complement motif): DTTGTTTACSBTBB Alignment: DTTGTTTACSBTBB ATTGTTWDB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 70 Foxq1 Original Motif Reverse Complement Forward 2 9 0.0407369 Consensus sequence (original motif): HATTGTTTATW Consensus sequence (reverse complement motif): WATAAACAATH Alignment: WATAAACAATH -BDWAACAAT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 96 mdAAcCAACG Reverse Complement Reverse Complement Backward 1 9 0.044154 Consensus sequence (original motif): VDAACCAACG Consensus sequence (reverse complement motif): CGTTGGTTDB Alignment: CGTTGGTTDB -ATTGTTWDB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 74 Motif name: FOXC1 Consensus sequence (original motif): VBHVHGTA Consensus sequence (reverse complement motif): TACHBHBV ************************************************************************ Best Matches for Motif ID 74 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 75 FOXF2 Reverse Complement Reverse Complement Backward 1 8 0.0250969 Consensus sequence (original motif): BHADSGTAAACAAD Consensus sequence (reverse complement motif): DTTGTTTACSBTBB Alignment: DTTGTTTACSBTBB ------TACHBHBV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 63 FOXL1 Original Motif Original Motif Backward 1 8 0.0421733 Consensus sequence (original motif): WHDAHATA Consensus sequence (reverse complement motif): TATDTDHW Alignment: WHDAHATA VBHVHGTA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 90 ymTACATAyw Reverse Complement Original Motif Forward 3 8 0.0422828 Consensus sequence (original motif): HHTACATABD Consensus sequence (reverse complement motif): DBTATGTAHH Alignment: HHTACATABD --TACHBHBV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 62 TBP Reverse Complement Original Motif Forward 3 8 0.0452131 Consensus sequence (original motif): STATAAAWRVVVVBV Consensus sequence (reverse complement motif): VBVVVVMWTTTATAS Alignment: STATAAAWRVVVVBV --TACHBHBV----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Original Motif Reverse Complement Backward 14 8 0.046771 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM ---------VBHVHGTA------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 75 Motif name: FOXF2 Consensus sequence (original motif): BHADSGTAAACAAD Consensus sequence (reverse complement motif): DTTGTTTACSBTBB ************************************************************************ Best Matches for Motif ID 75 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 125 wwTAATwwATTAww Reverse Complement Original Motif Forward 1 14 0.0789966 Consensus sequence (original motif): DDTAATWWATTAHH Consensus sequence (reverse complement motif): HHTAATWWATTADD Alignment: DDTAATWWATTAHH DTTGTTTACSBTBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Original Motif Reverse Complement Backward 3 14 0.0801361 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM --------------BHADSGTAAACAAD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 76 Sox2 Original Motif Reverse Complement Forward 1 14 0.0829475 Consensus sequence (original motif): CCWTTGTYATGCAAA Consensus sequence (reverse complement motif): TTTGCATMACAAWGG Alignment: TTTGCATMACAAWGG BHADSGTAAACAAD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Original Motif Original Motif Forward 1 14 0.0886208 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT Alignment: AADAAAAMAAAAAM BHADSGTAAACAAD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 80 Pou5f1 Reverse Complement Reverse Complement Forward 2 14 0.0891042 Consensus sequence (original motif): CWTTGTHATGCAAAT Consensus sequence (reverse complement motif): ATTTGCATHACAAWG Alignment: ATTTGCATHACAAWG -DTTGTTTACSBTBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 76 Motif name: Sox2 Consensus sequence (original motif): CCWTTGTYATGCAAA Consensus sequence (reverse complement motif): TTTGCATMACAAWGG ************************************************************************ Best Matches for Motif ID 76 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Reverse Complement Original Motif Forward 8 15 0.0816521 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC -------TTTGCATMACAAWGG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 80 Pou5f1 Reverse Complement Reverse Complement Forward 2 14 0.5 Consensus sequence (original motif): CWTTGTHATGCAAAT Consensus sequence (reverse complement motif): ATTTGCATHACAAWG Alignment: ATTTGCATHACAAWG- -TTTGCATMACAAWGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 125 wwTAATwwATTAww Original Motif Reverse Complement Backward 1 14 0.584157 Consensus sequence (original motif): DDTAATWWATTAHH Consensus sequence (reverse complement motif): HHTAATWWATTADD Alignment: -HHTAATWWATTADD CCWTTGTYATGCAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 75 FOXF2 Original Motif Reverse Complement Forward 1 14 0.585609 Consensus sequence (original motif): BHADSGTAAACAAD Consensus sequence (reverse complement motif): DTTGTTTACSBTBB Alignment: DTTGTTTACSBTBB- CCWTTGTYATGCAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 68 HNF1A Original Motif Original Motif Forward 1 14 0.59033 Consensus sequence (original motif): GGTTAATDATTAMC Consensus sequence (reverse complement motif): GYTAATDATTAACC Alignment: GGTTAATDATTAMC- CCWTTGTYATGCAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 77 Motif name: Sox5 Consensus sequence (original motif): HAACAAT Consensus sequence (reverse complement motif): ATTGTTH ************************************************************************ Best Matches for Motif ID 77 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 87 SOX9 Reverse Complement Reverse Complement Forward 3 7 0 Consensus sequence (original motif): DAACAATRG Consensus sequence (reverse complement motif): CMATTGTTH Alignment: CMATTGTTH --ATTGTTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 73 SRY Reverse Complement Reverse Complement Forward 1 7 0.0011033 Consensus sequence (original motif): BDWAACAAT Consensus sequence (reverse complement motif): ATTGTTWDB Alignment: ATTGTTWDB ATTGTTH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 76 Sox2 Reverse Complement Original Motif Forward 7 7 0.022869 Consensus sequence (original motif): CCWTTGTYATGCAAA Consensus sequence (reverse complement motif): TTTGCATMACAAWGG Alignment: CCWTTGTYATGCAAA ------ATTGTTH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 70 Foxq1 Original Motif Reverse Complement Backward 4 7 0.0242658 Consensus sequence (original motif): HATTGTTTATW Consensus sequence (reverse complement motif): WATAAACAATH Alignment: WATAAACAATH -HAACAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 89 aaACAAAACaa Original Motif Original Motif Forward 1 7 0.0278776 Consensus sequence (original motif): AAACAAAACHV Consensus sequence (reverse complement motif): BHGTTTTGTTT Alignment: AAACAAAACHV HAACAAT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 78 Motif name: RORA_1 Consensus sequence (original motif): AWVDAGGTCA Consensus sequence (reverse complement motif): TGACCTDVWT ************************************************************************ Best Matches for Motif ID 78 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 84 NR1H2RXRA Original Motif Original Motif Backward 3 10 0.05425 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC -----AWVDAGGTCA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 83 NR2F1 Original Motif Reverse Complement Forward 5 10 0.0654808 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA Alignment: AKGYYCAAAGRTCA ----AWVDAGGTCA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Reverse Complement Reverse Complement Backward 1 10 0.0688859 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: HBYGAGCTGGBB --TGACCTDVWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 122 hsCCAGGCCTGGsr Reverse Complement Original Motif Forward 5 10 0.0826087 Consensus sequence (original motif): HVCCAGGCCTGGBD Consensus sequence (reverse complement motif): HBCCAGGCCTGGVD Alignment: HVCCAGGCCTGGBD ----TGACCTDVWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 76 Sox2 Original Motif Reverse Complement Backward 2 10 0.0865719 Consensus sequence (original motif): CCWTTGTYATGCAAA Consensus sequence (reverse complement motif): TTTGCATMACAAWGG Alignment: TTTGCATMACAAWGG ----AWVDAGGTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 79 Motif name: Prrx2 Consensus sequence (original motif): AATTA Consensus sequence (reverse complement motif): TAATT ************************************************************************ Best Matches for Motif ID 79 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 106 wtAATTAAtw Reverse Complement Reverse Complement Backward 3 5 0.00550847 Consensus sequence (original motif): DTAATTAATH Consensus sequence (reverse complement motif): HATTAATTAD Alignment: HATTAATTAD ---TAATT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 66 Lhx3 Reverse Complement Reverse Complement Backward 2 5 0.00864407 Consensus sequence (original motif): WAATTAATTAWYB Consensus sequence (reverse complement motif): BMWTAATTAATTW Alignment: BMWTAATTAATTW -------TAATT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 85 Nobox Reverse Complement Original Motif Forward 1 5 0.0115968 Consensus sequence (original motif): TAATTRSY Consensus sequence (reverse complement motif): MSMAATTA Alignment: TAATTRSY TAATT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 125 wwTAATwwATTAww Reverse Complement Reverse Complement Backward 8 5 0.0417489 Consensus sequence (original motif): DDTAATWWATTAHH Consensus sequence (reverse complement motif): HHTAATWWATTADD Alignment: HHTAATWWATTADD --TAATT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 68 HNF1A Original Motif Reverse Complement Forward 4 5 0.0434826 Consensus sequence (original motif): GGTTAATDATTAMC Consensus sequence (reverse complement motif): GYTAATDATTAACC Alignment: GYTAATDATTAACC ---AATTA------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 80 Motif name: Pou5f1 Consensus sequence (original motif): CWTTGTHATGCAAAT Consensus sequence (reverse complement motif): ATTTGCATHACAAWG ************************************************************************ Best Matches for Motif ID 80 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Reverse Complement Original Motif Forward 5 15 0.0828317 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC ----ATTTGCATHACAAWG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 76 Sox2 Original Motif Original Motif Forward 2 14 0.5 Consensus sequence (original motif): CCWTTGTYATGCAAA Consensus sequence (reverse complement motif): TTTGCATMACAAWGG Alignment: CCWTTGTYATGCAAA- -CWTTGTHATGCAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 75 FOXF2 Reverse Complement Reverse Complement Backward 1 14 0.591766 Consensus sequence (original motif): BHADSGTAAACAAD Consensus sequence (reverse complement motif): DTTGTTTACSBTBB Alignment: -DTTGTTTACSBTBB ATTTGCATHACAAWG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 98 myyCCCACmTGCmyr Original Motif Original Motif Forward 2 14 0.592463 Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD Alignment: HBCCCCACMTGCMHV- -CWTTGTHATGCAAAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 118 yrCACATGCATGTGyr Original Motif Reverse Complement Backward 4 13 1.07966 Consensus sequence (original motif): HVCACATGCATGTGBD Consensus sequence (reverse complement motif): DVCACATGCATGTGBH Alignment: --DVCACATGCATGTGBH CWTTGTHATGCAAAT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 81 Motif name: Pax4 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM ************************************************************************ Best Matches for Motif ID 81 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 62 TBP Original Motif Original Motif Forward 1 15 0.0350174 Consensus sequence (original motif): STATAAAWRVVVVBV Consensus sequence (reverse complement motif): VBVVVVMWTTTATAS Alignment: STATAAAWRVVVVBV--------------- RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 98 myyCCCACmTGCmyr Original Motif Original Motif Backward 1 15 0.0514106 Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD Alignment: ---------------HBCCCCACMTGCMHV RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 59 Motif 59 Original Motif Original Motif Backward 1 14 0.542018 Consensus sequence (original motif): CTBCCTCHSYCYCC Consensus sequence (reverse complement motif): GGMGKSHGAGGBAG Alignment: ----------------CTBCCTCHSYCYCC RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 125 wwTAATwwATTAww Reverse Complement Reverse Complement Backward 1 14 0.557646 Consensus sequence (original motif): DDTAATWWATTAHH Consensus sequence (reverse complement motif): HHTAATWWATTADD Alignment: ----------------HHTAATWWATTADD GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 68 HNF1A Reverse Complement Reverse Complement Backward 1 14 0.564862 Consensus sequence (original motif): GGTTAATDATTAMC Consensus sequence (reverse complement motif): GYTAATDATTAACC Alignment: ----------------GYTAATDATTAACC GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 82 Motif name: HNF1B Consensus sequence (original motif): TTAATRWTTAAC Consensus sequence (reverse complement motif): GTTAAWKATTAA ************************************************************************ Best Matches for Motif ID 82 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 68 HNF1A Original Motif Reverse Complement Backward 2 12 0.0255432 Consensus sequence (original motif): GGTTAATDATTAMC Consensus sequence (reverse complement motif): GYTAATDATTAACC Alignment: GYTAATDATTAACC -TTAATRWTTAAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 125 wwTAATwwATTAww Reverse Complement Original Motif Backward 2 12 0.0657822 Consensus sequence (original motif): DDTAATWWATTAHH Consensus sequence (reverse complement motif): HHTAATWWATTADD Alignment: DDTAATWWATTAHH -GTTAAWKATTAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 84 NR1H2RXRA Reverse Complement Original Motif Backward 2 12 0.0685194 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: AAAGGTCAAAGGTCAAC ----GTTAAWKATTAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 66 Lhx3 Original Motif Original Motif Forward 1 12 0.0745842 Consensus sequence (original motif): WAATTAATTAWYB Consensus sequence (reverse complement motif): BMWTAATTAATTW Alignment: WAATTAATTAWYB TTAATRWTTAAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Reverse Complement Original Motif Forward 2 12 0.0845958 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT Alignment: AADAAAAMAAAAAM -GTTAAWKATTAA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 83 Motif name: NR2F1 Consensus sequence (original motif): TGAMCTTTGMMCYT Consensus sequence (reverse complement motif): AKGYYCAAAGRTCA ************************************************************************ Best Matches for Motif ID 83 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 84 NR1H2RXRA Original Motif Reverse Complement Backward 2 14 0.0174588 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: GTTGACCTTTGACCTTT --TGAMCTTTGMMCYT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Original Motif Original Motif Forward 8 14 0.0713206 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC -------TGAMCTTTGMMCYT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 98 myyCCCACmTGCmyr Reverse Complement Original Motif Forward 1 14 0.0745302 Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD Alignment: HBCCCCACMTGCMHV AKGYYCAAAGRTCA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 71 Evi1 Original Motif Reverse Complement Backward 3 12 1.06838 Consensus sequence (original motif): AAGAYAAGATAABA Consensus sequence (reverse complement motif): TBTTATCTTMTCTT Alignment: --TBTTATCTTMTCTT TGAMCTTTGMMCYT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 68 HNF1A Original Motif Original Motif Forward 3 12 1.06886 Consensus sequence (original motif): GGTTAATDATTAMC Consensus sequence (reverse complement motif): GYTAATDATTAACC Alignment: GGTTAATDATTAMC-- --TGAMCTTTGMMCYT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 84 Motif name: NR1H2RXRA Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT ************************************************************************ Best Matches for Motif ID 84 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 68 HNF1A Original Motif Original Motif Backward 1 14 0.0896514 Consensus sequence (original motif): GGTTAATDATTAMC Consensus sequence (reverse complement motif): GYTAATDATTAACC Alignment: ---GGTTAATDATTAMC AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 75 FOXF2 Reverse Complement Reverse Complement Backward 2 13 0.595213 Consensus sequence (original motif): BHADSGTAAACAAD Consensus sequence (reverse complement motif): DTTGTTTACSBTBB Alignment: ----DTTGTTTACSBTBB GTTGACCTTTGACCTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 76 Sox2 Original Motif Reverse Complement Backward 4 12 1.0817 Consensus sequence (original motif): CCWTTGTYATGCAAA Consensus sequence (reverse complement motif): TTTGCATMACAAWGG Alignment: -----TTTGCATMACAAWGG AAAGGTCAAAGGTCAAC--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 82 HNF1B Original Motif Original Motif Backward 1 12 1.0906 Consensus sequence (original motif): TTAATRWTTAAC Consensus sequence (reverse complement motif): GTTAAWKATTAA Alignment: -----TTAATRWTTAAC AAAGGTCAAAGGTCAAC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Reverse Complement Reverse Complement Forward 1 12 1.09978 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: HBYGAGCTGGBB----- GTTGACCTTTGACCTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 85 Motif name: Nobox Consensus sequence (original motif): TAATTRSY Consensus sequence (reverse complement motif): MSMAATTA ************************************************************************ Best Matches for Motif ID 85 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 66 Lhx3 Original Motif Original Motif Forward 5 8 0.0419408 Consensus sequence (original motif): WAATTAATTAWYB Consensus sequence (reverse complement motif): BMWTAATTAATTW Alignment: WAATTAATTAWYB ----TAATTRSY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 125 wwTAATwwATTAww Original Motif Reverse Complement Forward 7 8 0.0591612 Consensus sequence (original motif): DDTAATWWATTAHH Consensus sequence (reverse complement motif): HHTAATWWATTADD Alignment: HHTAATWWATTADD ------TAATTRSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 62 TBP Reverse Complement Reverse Complement Forward 5 8 0.0604219 Consensus sequence (original motif): STATAAAWRVVVVBV Consensus sequence (reverse complement motif): VBVVVVMWTTTATAS Alignment: VBVVVVMWTTTATAS ----MSMAATTA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 106 wtAATTAAtw Original Motif Original Motif Backward 2 8 0.0649275 Consensus sequence (original motif): DTAATTAATH Consensus sequence (reverse complement motif): HATTAATTAD Alignment: DTAATTAATH -TAATTRSY- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 68 HNF1A Original Motif Original Motif Backward 1 8 0.0652412 Consensus sequence (original motif): GGTTAATDATTAMC Consensus sequence (reverse complement motif): GYTAATDATTAACC Alignment: GGTTAATDATTAMC ------TAATTRSY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 86 Motif name: FOXO3 Consensus sequence (original motif): KGTAAACA Consensus sequence (reverse complement motif): TGTTTACR ************************************************************************ Best Matches for Motif ID 86 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 75 FOXF2 Reverse Complement Reverse Complement Backward 5 8 0.0236411 Consensus sequence (original motif): BHADSGTAAACAAD Consensus sequence (reverse complement motif): DTTGTTTACSBTBB Alignment: DTTGTTTACSBTBB --TGTTTACR---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 70 Foxq1 Reverse Complement Original Motif Backward 4 8 0.0397436 Consensus sequence (original motif): HATTGTTTATW Consensus sequence (reverse complement motif): WATAAACAATH Alignment: HATTGTTTATW TGTTTACR--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Reverse Complement Original Motif Forward 4 8 0.054763 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: DHATKTTTAHH ---TGTTTACR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Original Motif Reverse Complement Backward 2 8 0.0656948 Consensus sequence (original motif): KBDTRTTTRTTT Consensus sequence (reverse complement motif): AAAMAAAMADBY Alignment: AAAMAAAMADBY ---KGTAAACA- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 61 MEF2A Reverse Complement Original Motif Forward 2 8 0.0727619 Consensus sequence (original motif): CTATTTWTAG Consensus sequence (reverse complement motif): CTAWAAATAG Alignment: CTATTTWTAG -TGTTTACR- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 3 Motif ID: 87 Motif name: SOX9 Consensus sequence (original motif): DAACAATRG Consensus sequence (reverse complement motif): CMATTGTTH ************************************************************************ Best Matches for Motif ID 87 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 76 Sox2 Original Motif Reverse Complement Backward 7 9 0.018186 Consensus sequence (original motif): CCWTTGTYATGCAAA Consensus sequence (reverse complement motif): TTTGCATMACAAWGG Alignment: TTTGCATMACAAWGG DAACAATRG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Original Motif Original Motif Forward 1 9 0.0583456 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC DAACAATRG--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 89 aaACAAAACaa Original Motif Original Motif Forward 1 9 0.0599655 Consensus sequence (original motif): AAACAAAACHV Consensus sequence (reverse complement motif): BHGTTTTGTTT Alignment: AAACAAAACHV DAACAATRG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Reverse Complement Original Motif Backward 3 9 0.0642936 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: DHATKTTTAHH CMATTGTTH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 61 MEF2A Reverse Complement Original Motif Backward 1 9 0.0646581 Consensus sequence (original motif): CTATTTWTAG Consensus sequence (reverse complement motif): CTAWAAATAG Alignment: CTATTTWTAG -CMATTGTTH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 88 Motif name: ygCTyTTCsg Consensus sequence (original motif): HDCTYTTCGB Consensus sequence (reverse complement motif): BCGAAMAGHH ************************************************************************ Best Matches for Motif ID 88 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 113 htCTGyKTCbt Reverse Complement Reverse Complement Backward 1 10 0.0278763 Consensus sequence (original motif): HBCTGYTTCBH Consensus sequence (reverse complement motif): HVGAAMCAGVH Alignment: HVGAAMCAGVH -BCGAAMAGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Reverse Complement Reverse Complement Backward 1 10 0.0294361 Consensus sequence (original motif): KBDTRTTTRTTT Consensus sequence (reverse complement motif): AAAMAAAMADBY Alignment: AAAMAAAMADBY --BCGAAMAGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 109 aaCAAAAACaa Reverse Complement Original Motif Forward 2 10 0.0382901 Consensus sequence (original motif): HHCAAAAACHH Consensus sequence (reverse complement motif): HHGTTTTTGHH Alignment: HHCAAAAACHH -BCGAAMAGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 91 wtATTTTAww Reverse Complement Reverse Complement Backward 1 10 0.0393404 Consensus sequence (original motif): DHATTTTAWH Consensus sequence (reverse complement motif): HWTAAAATHD Alignment: HWTAAAATHD BCGAAMAGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Reverse Complement Reverse Complement Backward 2 10 0.0400249 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: HBYGAGCTGGBB -BCGAAMAGHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 89 Motif name: aaACAAAACaa Consensus sequence (original motif): AAACAAAACHV Consensus sequence (reverse complement motif): BHGTTTTGTTT ************************************************************************ Best Matches for Motif ID 89 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 109 aaCAAAAACaa Reverse Complement Reverse Complement Backward 1 11 0.00582159 Consensus sequence (original motif): HHCAAAAACHH Consensus sequence (reverse complement motif): HHGTTTTTGHH Alignment: HHGTTTTTGHH BHGTTTTGTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Reverse Complement Original Motif Backward 2 11 0.0320461 Consensus sequence (original motif): KBDTRTTTRTTT Consensus sequence (reverse complement motif): AAAMAAAMADBY Alignment: KBDTRTTTRTTT BHGTTTTGTTT- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Original Motif Original Motif Forward 3 11 0.039575 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT Alignment: AADAAAAMAAAAAM --AAACAAAACHV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 75 FOXF2 Original Motif Original Motif Forward 3 11 0.0401124 Consensus sequence (original motif): BHADSGTAAACAAD Consensus sequence (reverse complement motif): DTTGTTTACSBTBB Alignment: BHADSGTAAACAAD --AAACAAAACHV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Reverse Complement Original Motif Backward 1 11 0.0486334 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: DHATKTTTAHH BHGTTTTGTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 90 Motif name: ymTACATAyw Consensus sequence (original motif): HHTACATABD Consensus sequence (reverse complement motif): DBTATGTAHH ************************************************************************ Best Matches for Motif ID 90 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 114 awAACAcAAwa Reverse Complement Reverse Complement Forward 2 10 0.0626629 Consensus sequence (original motif): DDAACACAADV Consensus sequence (reverse complement motif): BDTTGTGTTDD Alignment: BDTTGTGTTDD -DBTATGTAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Original Motif Reverse Complement Backward 2 10 0.0690336 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: HHTAAARATHD HHTACATABD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Original Motif Reverse Complement Forward 2 10 0.0763781 Consensus sequence (original motif): KBDTRTTTRTTT Consensus sequence (reverse complement motif): AAAMAAAMADBY Alignment: AAAMAAAMADBY -HHTACATABD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 75 FOXF2 Reverse Complement Reverse Complement Backward 5 10 0.0772253 Consensus sequence (original motif): BHADSGTAAACAAD Consensus sequence (reverse complement motif): DTTGTTTACSBTBB Alignment: DTTGTTTACSBTBB DBTATGTAHH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 100 wwTAATAAww Reverse Complement Reverse Complement Forward 1 10 0.0773471 Consensus sequence (original motif): DHTAATAADD Consensus sequence (reverse complement motif): DDTTATTAHD Alignment: DDTTATTAHD DBTATGTAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 91 Motif name: wtATTTTAww Consensus sequence (original motif): DHATTTTAWH Consensus sequence (reverse complement motif): HWTAAAATHD ************************************************************************ Best Matches for Motif ID 91 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 100 wwTAATAAww Reverse Complement Original Motif Forward 1 10 0.0307554 Consensus sequence (original motif): DHTAATAADD Consensus sequence (reverse complement motif): DDTTATTAHD Alignment: DHTAATAADD HWTAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Reverse Complement Reverse Complement Forward 2 10 0.031047 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: HHTAAARATHD -HWTAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 106 wtAATTAAtw Original Motif Original Motif Forward 1 10 0.0371798 Consensus sequence (original motif): DTAATTAATH Consensus sequence (reverse complement motif): HATTAATTAD Alignment: DTAATTAATH DHATTTTAWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 95 rmATGCTAww Original Motif Original Motif Forward 1 10 0.0404266 Consensus sequence (original motif): DHATGCTADH Consensus sequence (reverse complement motif): HDTAGCATHD Alignment: DHATGCTADH DHATTTTAWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 89 aaACAAAACaa Original Motif Reverse Complement Backward 1 10 0.0448101 Consensus sequence (original motif): AAACAAAACHV Consensus sequence (reverse complement motif): BHGTTTTGTTT Alignment: BHGTTTTGTTT -DHATTTTAWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 92 Motif name: cgAKGyCAcg Consensus sequence (original motif): CGAGGYCACV Consensus sequence (reverse complement motif): VGTGMCCTCG ************************************************************************ Best Matches for Motif ID 92 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 97 sgArGCCACg Original Motif Original Motif Forward 1 10 0.00323214 Consensus sequence (original motif): SGARGCCACG Consensus sequence (reverse complement motif): CGTGGCKTCS Alignment: SGARGCCACG CGAGGYCACV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 107 crCGyGCRcg Reverse Complement Reverse Complement Forward 1 10 0.039949 Consensus sequence (original motif): CGCGTGCACG Consensus sequence (reverse complement motif): CGTGCACGCG Alignment: CGTGCACGCG VGTGMCCTCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 84 NR1H2RXRA Reverse Complement Reverse Complement Backward 8 10 0.0444539 Consensus sequence (original motif): AAAGGTCAAAGGTCAAC Consensus sequence (reverse complement motif): GTTGACCTTTGACCTTT Alignment: GTTGACCTTTGACCTTT VGTGMCCTCG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 95 rmATGCTAww Original Motif Original Motif Backward 1 10 0.0540906 Consensus sequence (original motif): DHATGCTADH Consensus sequence (reverse complement motif): HDTAGCATHD Alignment: DHATGCTADH CGAGGYCACV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Reverse Complement Reverse Complement Forward 1 10 0.0546695 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: HBYGAGCTGGBB VGTGMCCTCG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 93 Motif name: cmCARCACTwr Consensus sequence (original motif): BHCAGCACTHV Consensus sequence (reverse complement motif): VHAGTGCTGHB ************************************************************************ Best Matches for Motif ID 93 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Original Motif Original Motif Backward 1 11 0.00936148 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: BBCCAGCTCMBD -BHCAGCACTHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 110 cmCCACACCcm Original Motif Original Motif Forward 1 11 0.0121475 Consensus sequence (original motif): HVCCACACCBV Consensus sequence (reverse complement motif): VBGGTGTGGBD Alignment: HVCCACACCBV BHCAGCACTHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 121 ctGAGTCATCkb Reverse Complement Original Motif Backward 1 11 0.0295417 Consensus sequence (original motif): HDGAGTCATCDB Consensus sequence (reverse complement motif): BHGATGACTCDD Alignment: HDGAGTCATCDB -VHAGTGCTGHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 122 hsCCAGGCCTGGsr Reverse Complement Reverse Complement Backward 2 11 0.0336897 Consensus sequence (original motif): HVCCAGGCCTGGBD Consensus sequence (reverse complement motif): HBCCAGGCCTGGVD Alignment: HBCCAGGCCTGGVD --VHAGTGCTGHB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 103 csCCaGCTCCCgs Original Motif Original Motif Forward 2 11 0.0373286 Consensus sequence (original motif): BBCCAGCTCCCVB Consensus sequence (reverse complement motif): BVGGGAGCTGGBB Alignment: BBCCAGCTCCCVB -BHCAGCACTHV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 94 Motif name: yrTCWCAAyr Consensus sequence (original motif): HVTCACAAYD Consensus sequence (reverse complement motif): HKTTGTGABH ************************************************************************ Best Matches for Motif ID 94 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 114 awAACAcAAwa Reverse Complement Reverse Complement Forward 1 10 0.00495535 Consensus sequence (original motif): DDAACACAADV Consensus sequence (reverse complement motif): BDTTGTGTTDD Alignment: BDTTGTGTTDD HKTTGTGABH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 76 Sox2 Reverse Complement Original Motif Backward 2 10 0.00762497 Consensus sequence (original motif): CCWTTGTYATGCAAA Consensus sequence (reverse complement motif): TTTGCATMACAAWGG Alignment: CCWTTGTYATGCAAA ----HKTTGTGABH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 100 wwTAATAAww Reverse Complement Reverse Complement Forward 1 10 0.0114769 Consensus sequence (original motif): DHTAATAADD Consensus sequence (reverse complement motif): DDTTATTAHD Alignment: DDTTATTAHD HKTTGTGABH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 80 Pou5f1 Reverse Complement Original Motif Forward 6 10 0.0127574 Consensus sequence (original motif): CWTTGTHATGCAAAT Consensus sequence (reverse complement motif): ATTTGCATHACAAWG Alignment: CWTTGTHATGCAAAT -----HKTTGTGABH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 89 aaACAAAACaa Original Motif Original Motif Forward 1 10 0.0208363 Consensus sequence (original motif): AAACAAAACHV Consensus sequence (reverse complement motif): BHGTTTTGTTT Alignment: AAACAAAACHV HVTCACAAYD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 95 Motif name: rmATGCTAww Consensus sequence (original motif): DHATGCTADH Consensus sequence (reverse complement motif): HDTAGCATHD ************************************************************************ Best Matches for Motif ID 95 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 91 wtATTTTAww Original Motif Original Motif Backward 1 10 0.00863735 Consensus sequence (original motif): DHATTTTAWH Consensus sequence (reverse complement motif): HWTAAAATHD Alignment: DHATTTTAWH DHATGCTADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 115 ysCmAGCACwy Original Motif Reverse Complement Forward 1 10 0.0142021 Consensus sequence (original motif): HVCMAGCACHH Consensus sequence (reverse complement motif): DHGTGCTRGVH Alignment: DHGTGCTRGVH DHATGCTADH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 80 Pou5f1 Original Motif Original Motif Backward 1 10 0.0215325 Consensus sequence (original motif): CWTTGTHATGCAAAT Consensus sequence (reverse complement motif): ATTTGCATHACAAWG Alignment: CWTTGTHATGCAAAT -----DHATGCTADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 123 asMAAGCTTKst Original Motif Original Motif Forward 2 10 0.0234838 Consensus sequence (original motif): HBCAAGCTTGVD Consensus sequence (reverse complement motif): DVCAAGCTTGBH Alignment: HBCAAGCTTGVD -DHATGCTADH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 93 cmCARCACTwr Original Motif Reverse Complement Backward 2 10 0.0266703 Consensus sequence (original motif): BHCAGCACTHV Consensus sequence (reverse complement motif): VHAGTGCTGHB Alignment: VHAGTGCTGHB DHATGCTADH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 96 Motif name: mdAAcCAACG Consensus sequence (original motif): VDAACCAACG Consensus sequence (reverse complement motif): CGTTGGTTDB ************************************************************************ Best Matches for Motif ID 96 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 97 sgArGCCACg Original Motif Original Motif Forward 1 10 0.0161902 Consensus sequence (original motif): SGARGCCACG Consensus sequence (reverse complement motif): CGTGGCKTCS Alignment: SGARGCCACG VDAACCAACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Reverse Complement Reverse Complement Backward 3 10 0.0244161 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT Alignment: YTTTTTRTTTTDTT --CGTTGGTTDB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 106 wtAATTAAtw Reverse Complement Reverse Complement Backward 1 10 0.0244247 Consensus sequence (original motif): DTAATTAATH Consensus sequence (reverse complement motif): HATTAATTAD Alignment: HATTAATTAD CGTTGGTTDB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 70 Foxq1 Reverse Complement Original Motif Backward 1 10 0.0266383 Consensus sequence (original motif): HATTGTTTATW Consensus sequence (reverse complement motif): WATAAACAATH Alignment: HATTGTTTATW -CGTTGGTTDB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 113 htCTGyKTCbt Original Motif Reverse Complement Forward 2 10 0.0296542 Consensus sequence (original motif): HBCTGYTTCBH Consensus sequence (reverse complement motif): HVGAAMCAGVH Alignment: HVGAAMCAGVH -VDAACCAACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 97 Motif name: sgArGCCACg Consensus sequence (original motif): SGARGCCACG Consensus sequence (reverse complement motif): CGTGGCKTCS ************************************************************************ Best Matches for Motif ID 97 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 92 cgAKGyCAcg Original Motif Original Motif Backward 1 10 0.0020736 Consensus sequence (original motif): CGAGGYCACV Consensus sequence (reverse complement motif): VGTGMCCTCG Alignment: CGAGGYCACV SGARGCCACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 96 mdAAcCAACG Original Motif Original Motif Backward 1 10 0.0408537 Consensus sequence (original motif): VDAACCAACG Consensus sequence (reverse complement motif): CGTTGGTTDB Alignment: VDAACCAACG SGARGCCACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 95 rmATGCTAww Reverse Complement Reverse Complement Forward 1 10 0.0472561 Consensus sequence (original motif): DHATGCTADH Consensus sequence (reverse complement motif): HDTAGCATHD Alignment: HDTAGCATHD CGTGGCKTCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 126 yvTGCAGsCAcg Reverse Complement Reverse Complement Forward 1 10 0.057998 Consensus sequence (original motif): BVTGCAGSCABV Consensus sequence (reverse complement motif): VBTGSCTGCAVB Alignment: VBTGSCTGCAVB CGTGGCKTCS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 116 dyCTGCyTCyc Original Motif Reverse Complement Backward 1 10 0.0617012 Consensus sequence (original motif): DHCTGCYTCHB Consensus sequence (reverse complement motif): BHGAKGCAGHH Alignment: BHGAKGCAGHH -SGARGCCACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 98 Motif name: myyCCCACmTGCmyr Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD ************************************************************************ Best Matches for Motif ID 98 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Original Motif Original Motif Forward 8 15 0.0499349 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC -------HBCCCCACMTGCMHV-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 118 yrCACATGCATGTGyr Original Motif Original Motif Backward 1 15 0.0613869 Consensus sequence (original motif): HVCACATGCATGTGBD Consensus sequence (reverse complement motif): DVCACATGCATGTGBH Alignment: HVCACATGCATGTGBD -HBCCCCACMTGCMHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 122 hsCCAGGCCTGGsr Original Motif Original Motif Forward 1 14 0.538726 Consensus sequence (original motif): HVCCAGGCCTGGBD Consensus sequence (reverse complement motif): HBCCAGGCCTGGVD Alignment: HVCCAGGCCTGGBD- HBCCCCACMTGCMHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 59 Motif 59 Original Motif Original Motif Backward 1 14 0.560094 Consensus sequence (original motif): CTBCCTCHSYCYCC Consensus sequence (reverse complement motif): GGMGKSHGAGGBAG Alignment: -CTBCCTCHSYCYCC HBCCCCACMTGCMHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 58 Motif 58 Original Motif Original Motif Backward 1 14 0.57014 Consensus sequence (original motif): CACACACACACACA Consensus sequence (reverse complement motif): TGTGTGTGTGTGTG Alignment: -CACACACACACACA HBCCCCACMTGCMHV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 99 Motif name: graGGGGGArr Consensus sequence (original motif): DVAGGGGGADD Consensus sequence (reverse complement motif): HDTCCCCCTVH ************************************************************************ Best Matches for Motif ID 99 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 127 rryCAGGGAyw Original Motif Original Motif Backward 1 11 0.0288287 Consensus sequence (original motif): DDYCAGGGAHD Consensus sequence (reverse complement motif): DHTCCCTGMDD Alignment: DDYCAGGGAHD DVAGGGGGADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 59 Motif 59 Original Motif Reverse Complement Forward 4 11 0.0416239 Consensus sequence (original motif): CTBCCTCHSYCYCC Consensus sequence (reverse complement motif): GGMGKSHGAGGBAG Alignment: GGMGKSHGAGGBAG ---DVAGGGGGADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 110 cmCCACACCcm Reverse Complement Original Motif Forward 1 11 0.0422985 Consensus sequence (original motif): HVCCACACCBV Consensus sequence (reverse complement motif): VBGGTGTGGBD Alignment: HVCCACACCBV HDTCCCCCTVH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 112 ctGAGTkTGAgg Original Motif Original Motif Backward 1 11 0.042367 Consensus sequence (original motif): VBGAGTKTGADD Consensus sequence (reverse complement motif): HHTCARACTCVV Alignment: VBGAGTKTGADD -DVAGGGGGADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 111 ccCCmCaCCCCcc Original Motif Reverse Complement Forward 1 11 0.0428468 Consensus sequence (original motif): HBCCCCACCCCBH Consensus sequence (reverse complement motif): DBGGGGTGGGGBD Alignment: DBGGGGTGGGGBD DVAGGGGGADD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 100 Motif name: wwTAATAAww Consensus sequence (original motif): DHTAATAADD Consensus sequence (reverse complement motif): DDTTATTAHD ************************************************************************ Best Matches for Motif ID 100 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 91 wtATTTTAww Original Motif Reverse Complement Backward 1 10 0.0241522 Consensus sequence (original motif): DHATTTTAWH Consensus sequence (reverse complement motif): HWTAAAATHD Alignment: HWTAAAATHD DHTAATAADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Reverse Complement Original Motif Backward 1 10 0.0255442 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: DHATKTTTAHH -DDTTATTAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 125 wwTAATwwATTAww Original Motif Reverse Complement Forward 1 10 0.0362107 Consensus sequence (original motif): DDTAATWWATTAHH Consensus sequence (reverse complement motif): HHTAATWWATTADD Alignment: HHTAATWWATTADD DHTAATAADD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 106 wtAATTAAtw Reverse Complement Reverse Complement Forward 1 10 0.0364833 Consensus sequence (original motif): DTAATTAATH Consensus sequence (reverse complement motif): HATTAATTAD Alignment: HATTAATTAD DDTTATTAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 109 aaCAAAAACaa Original Motif Original Motif Backward 2 10 0.0471554 Consensus sequence (original motif): HHCAAAAACHH Consensus sequence (reverse complement motif): HHGTTTTTGHH Alignment: HHCAAAAACHH DHTAATAADD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 101 Motif name: csCACCCCgg Consensus sequence (original motif): HVCACCCCBB Consensus sequence (reverse complement motif): BBGGGGTGVD ************************************************************************ Best Matches for Motif ID 101 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 111 ccCCmCaCCCCcc Original Motif Original Motif Forward 4 10 0 Consensus sequence (original motif): HBCCCCACCCCBH Consensus sequence (reverse complement motif): DBGGGGTGGGGBD Alignment: HBCCCCACCCCBH ---HVCACCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 110 cmCCACACCcm Original Motif Original Motif Backward 1 10 0.00930301 Consensus sequence (original motif): HVCCACACCBV Consensus sequence (reverse complement motif): VBGGTGTGGBD Alignment: HVCCACACCBV -HVCACCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 99 graGGGGGArr Original Motif Reverse Complement Backward 1 10 0.0256956 Consensus sequence (original motif): DVAGGGGGADD Consensus sequence (reverse complement motif): HDTCCCCCTVH Alignment: HDTCCCCCTVH -HVCACCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Reverse Complement Reverse Complement Backward 2 10 0.033038 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: HBYGAGCTGGBB -BBGGGGTGVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 93 cmCARCACTwr Original Motif Original Motif Backward 2 10 0.0377738 Consensus sequence (original motif): BHCAGCACTHV Consensus sequence (reverse complement motif): VHAGTGCTGHB Alignment: BHCAGCACTHV HVCACCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 102 Motif name: ssCkGGYCCCsg Consensus sequence (original motif): BBCKGGCCCCVV Consensus sequence (reverse complement motif): VVGGGGCCRGBB ************************************************************************ Best Matches for Motif ID 102 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 103 csCCaGCTCCCgs Reverse Complement Reverse Complement Forward 2 12 0.00699729 Consensus sequence (original motif): BBCCAGCTCCCVB Consensus sequence (reverse complement motif): BVGGGAGCTGGBB Alignment: BVGGGAGCTGGBB -VVGGGGCCRGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 124 cswGGGCCCwsg Original Motif Original Motif Backward 1 12 0.00901563 Consensus sequence (original motif): VVWGGGCCCWBB Consensus sequence (reverse complement motif): BBWGGGCCCWVV Alignment: VVWGGGCCCWBB BBCKGGCCCCVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 111 ccCCmCaCCCCcc Reverse Complement Reverse Complement Backward 2 12 0.015463 Consensus sequence (original motif): HBCCCCACCCCBH Consensus sequence (reverse complement motif): DBGGGGTGGGGBD Alignment: DBGGGGTGGGGBD VVGGGGCCRGBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 122 hsCCAGGCCTGGsr Original Motif Original Motif Backward 2 12 0.0222107 Consensus sequence (original motif): HVCCAGGCCTGGBD Consensus sequence (reverse complement motif): HBCCAGGCCTGGVD Alignment: HVCCAGGCCTGGBD -BBCKGGCCCCVV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Original Motif Original Motif Backward 1 12 0.0277516 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: BBCCAGCTCMBD BBCKGGCCCCVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 103 Motif name: csCCaGCTCCCgs Consensus sequence (original motif): BBCCAGCTCCCVB Consensus sequence (reverse complement motif): BVGGGAGCTGGBB ************************************************************************ Best Matches for Motif ID 103 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 98 myyCCCACmTGCmyr Original Motif Original Motif Forward 3 13 0.0331906 Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD Alignment: HBCCCCACMTGCMHV --BBCCAGCTCCCVB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 122 hsCCAGGCCTGGsr Reverse Complement Original Motif Forward 2 13 0.033684 Consensus sequence (original motif): HVCCAGGCCTGGBD Consensus sequence (reverse complement motif): HBCCAGGCCTGGVD Alignment: HVCCAGGCCTGGBD -BVGGGAGCTGGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 111 ccCCmCaCCCCcc Original Motif Original Motif Forward 1 13 0.0344113 Consensus sequence (original motif): HBCCCCACCCCBH Consensus sequence (reverse complement motif): DBGGGGTGGGGBD Alignment: HBCCCCACCCCBH BBCCAGCTCCCVB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Reverse Complement Reverse Complement Forward 3 13 0.0424871 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM --BVGGGAGCTGGBB--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 59 Motif 59 Reverse Complement Reverse Complement Backward 1 13 0.0502084 Consensus sequence (original motif): CTBCCTCHSYCYCC Consensus sequence (reverse complement motif): GGMGKSHGAGGBAG Alignment: GGMGKSHGAGGBAG -BVGGGAGCTGGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 104 Motif name: cgCCCwGGScsg Consensus sequence (original motif): VDCCCWGGGCBB Consensus sequence (reverse complement motif): BBGCCCWGGGHV ************************************************************************ Best Matches for Motif ID 104 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 111 ccCCmCaCCCCcc Original Motif Original Motif Backward 1 12 0.0295528 Consensus sequence (original motif): HBCCCCACCCCBH Consensus sequence (reverse complement motif): DBGGGGTGGGGBD Alignment: HBCCCCACCCCBH -VDCCCWGGGCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 126 yvTGCAGsCAcg Original Motif Original Motif Backward 1 12 0.0306486 Consensus sequence (original motif): BVTGCAGSCABV Consensus sequence (reverse complement motif): VBTGSCTGCAVB Alignment: BVTGCAGSCABV VDCCCWGGGCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 103 csCCaGCTCCCgs Original Motif Original Motif Forward 1 12 0.0384576 Consensus sequence (original motif): BBCCAGCTCCCVB Consensus sequence (reverse complement motif): BVGGGAGCTGGBB Alignment: BBCCAGCTCCCVB VDCCCWGGGCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 98 myyCCCACmTGCmyr Original Motif Original Motif Forward 4 12 0.0393753 Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD Alignment: HBCCCCACMTGCMHV ---VDCCCWGGGCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 59 Motif 59 Original Motif Original Motif Forward 3 12 0.0399857 Consensus sequence (original motif): CTBCCTCHSYCYCC Consensus sequence (reverse complement motif): GGMGKSHGAGGBAG Alignment: CTBCCTCHSYCYCC --VDCCCWGGGCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 105 Motif name: ccGCAGCCss Consensus sequence (original motif): VCGCAGCCBB Consensus sequence (reverse complement motif): BBGGCTGCGV ************************************************************************ Best Matches for Motif ID 105 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 126 yvTGCAGsCAcg Reverse Complement Reverse Complement Backward 2 10 0 Consensus sequence (original motif): BVTGCAGSCABV Consensus sequence (reverse complement motif): VBTGSCTGCAVB Alignment: VBTGSCTGCAVB -BBGGCTGCGV- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 103 csCCaGCTCCCgs Reverse Complement Reverse Complement Forward 1 10 0.0101194 Consensus sequence (original motif): BBCCAGCTCCCVB Consensus sequence (reverse complement motif): BVGGGAGCTGGBB Alignment: BVGGGAGCTGGBB BBGGCTGCGV--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 102 ssCkGGYCCCsg Reverse Complement Original Motif Backward 3 10 0.0260007 Consensus sequence (original motif): BBCKGGCCCCVV Consensus sequence (reverse complement motif): VVGGGGCCRGBB Alignment: BBCKGGCCCCVV BBGGCTGCGV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Reverse Complement Reverse Complement Forward 3 10 0.0296738 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: HBYGAGCTGGBB --BBGGCTGCGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 116 dyCTGCyTCyc Reverse Complement Original Motif Forward 2 10 0.0303133 Consensus sequence (original motif): DHCTGCYTCHB Consensus sequence (reverse complement motif): BHGAKGCAGHH Alignment: DHCTGCYTCHB -BBGGCTGCGV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 106 Motif name: wtAATTAAtw Consensus sequence (original motif): DTAATTAATH Consensus sequence (reverse complement motif): HATTAATTAD ************************************************************************ Best Matches for Motif ID 106 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 66 Lhx3 Original Motif Reverse Complement Backward 3 10 0.0302494 Consensus sequence (original motif): WAATTAATTAWYB Consensus sequence (reverse complement motif): BMWTAATTAATTW Alignment: BMWTAATTAATTW -DTAATTAATH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 125 wwTAATwwATTAww Reverse Complement Reverse Complement Backward 2 10 0.0551105 Consensus sequence (original motif): DDTAATWWATTAHH Consensus sequence (reverse complement motif): HHTAATWWATTADD Alignment: HHTAATWWATTADD ---HATTAATTAD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 91 wtATTTTAww Original Motif Original Motif Forward 1 10 0.0562809 Consensus sequence (original motif): DHATTTTAWH Consensus sequence (reverse complement motif): HWTAAAATHD Alignment: DHATTTTAWH DTAATTAATH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 100 wwTAATAAww Reverse Complement Reverse Complement Forward 1 10 0.0621876 Consensus sequence (original motif): DHTAATAADD Consensus sequence (reverse complement motif): DDTTATTAHD Alignment: DDTTATTAHD HATTAATTAD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 68 HNF1A Reverse Complement Original Motif Backward 1 10 0.0690833 Consensus sequence (original motif): GGTTAATDATTAMC Consensus sequence (reverse complement motif): GYTAATDATTAACC Alignment: GGTTAATDATTAMC ----HATTAATTAD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 107 Motif name: crCGyGCRcg Consensus sequence (original motif): CGCGTGCACG Consensus sequence (reverse complement motif): CGTGCACGCG ************************************************************************ Best Matches for Motif ID 107 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 92 cgAKGyCAcg Reverse Complement Reverse Complement Forward 1 10 0.0293056 Consensus sequence (original motif): CGAGGYCACV Consensus sequence (reverse complement motif): VGTGMCCTCG Alignment: VGTGMCCTCG CGTGCACGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 115 ysCmAGCACwy Reverse Complement Reverse Complement Backward 1 10 0.0326988 Consensus sequence (original motif): HVCMAGCACHH Consensus sequence (reverse complement motif): DHGTGCTRGVH Alignment: DHGTGCTRGVH -CGTGCACGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 98 myyCCCACmTGCmyr Original Motif Original Motif Backward 1 10 0.033442 Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD Alignment: HBCCCCACMTGCMHV -----CGCGTGCACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 126 yvTGCAGsCAcg Original Motif Reverse Complement Forward 3 10 0.0362108 Consensus sequence (original motif): BVTGCAGSCABV Consensus sequence (reverse complement motif): VBTGSCTGCAVB Alignment: VBTGSCTGCAVB --CGCGTGCACG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 102 ssCkGGYCCCsg Reverse Complement Reverse Complement Backward 1 10 0.0421604 Consensus sequence (original motif): BBCKGGCCCCVV Consensus sequence (reverse complement motif): VVGGGGCCRGBB Alignment: VVGGGGCCRGBB --CGTGCACGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 108 Motif name: wwATkTTTAww Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD ************************************************************************ Best Matches for Motif ID 108 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 70 Foxq1 Original Motif Original Motif Forward 1 11 0.0381631 Consensus sequence (original motif): HATTGTTTATW Consensus sequence (reverse complement motif): WATAAACAATH Alignment: HATTGTTTATW DHATKTTTAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 109 aaCAAAAACaa Reverse Complement Original Motif Forward 1 11 0.0416262 Consensus sequence (original motif): HHCAAAAACHH Consensus sequence (reverse complement motif): HHGTTTTTGHH Alignment: HHCAAAAACHH HHTAAARATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Original Motif Original Motif Backward 2 11 0.0453405 Consensus sequence (original motif): KBDTRTTTRTTT Consensus sequence (reverse complement motif): AAAMAAAMADBY Alignment: KBDTRTTTRTTT DHATKTTTAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 113 htCTGyKTCbt Original Motif Original Motif Forward 1 11 0.0594403 Consensus sequence (original motif): HBCTGYTTCBH Consensus sequence (reverse complement motif): HVGAAMCAGVH Alignment: HBCTGYTTCBH DHATKTTTAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 62 TBP Original Motif Reverse Complement Backward 4 11 0.0630171 Consensus sequence (original motif): STATAAAWRVVVVBV Consensus sequence (reverse complement motif): VBVVVVMWTTTATAS Alignment: VBVVVVMWTTTATAS -DHATKTTTAHH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 109 Motif name: aaCAAAAACaa Consensus sequence (original motif): HHCAAAAACHH Consensus sequence (reverse complement motif): HHGTTTTTGHH ************************************************************************ Best Matches for Motif ID 109 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 89 aaACAAAACaa Reverse Complement Reverse Complement Backward 1 11 0.00652588 Consensus sequence (original motif): AAACAAAACHV Consensus sequence (reverse complement motif): BHGTTTTGTTT Alignment: BHGTTTTGTTT HHGTTTTTGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 117 yaCATAYACay Reverse Complement Reverse Complement Backward 1 11 0.0113253 Consensus sequence (original motif): HVCATACACAH Consensus sequence (reverse complement motif): DTGTGTATGBD Alignment: DTGTGTATGBD HHGTTTTTGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Reverse Complement Original Motif Forward 1 11 0.0251184 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: DHATKTTTAHH HHGTTTTTGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 75 FOXF2 Original Motif Original Motif Backward 2 11 0.0278186 Consensus sequence (original motif): BHADSGTAAACAAD Consensus sequence (reverse complement motif): DTTGTTTACSBTBB Alignment: BHADSGTAAACAAD --HHCAAAAACHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Reverse Complement Original Motif Forward 2 11 0.0320335 Consensus sequence (original motif): KBDTRTTTRTTT Consensus sequence (reverse complement motif): AAAMAAAMADBY Alignment: KBDTRTTTRTTT -HHGTTTTTGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 110 Motif name: cmCCACACCcm Consensus sequence (original motif): HVCCACACCBV Consensus sequence (reverse complement motif): VBGGTGTGGBD ************************************************************************ Best Matches for Motif ID 110 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 111 ccCCmCaCCCCcc Original Motif Original Motif Backward 3 11 0.00944953 Consensus sequence (original motif): HBCCCCACCCCBH Consensus sequence (reverse complement motif): DBGGGGTGGGGBD Alignment: HBCCCCACCCCBH HVCCACACCBV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 93 cmCARCACTwr Original Motif Original Motif Forward 1 11 0.0342522 Consensus sequence (original motif): BHCAGCACTHV Consensus sequence (reverse complement motif): VHAGTGCTGHB Alignment: BHCAGCACTHV HVCCACACCBV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 98 myyCCCACmTGCmyr Original Motif Original Motif Forward 1 11 0.0444 Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD Alignment: HBCCCCACMTGCMHV HVCCACACCBV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 99 graGGGGGArr Reverse Complement Original Motif Forward 1 11 0.0501309 Consensus sequence (original motif): DVAGGGGGADD Consensus sequence (reverse complement motif): HDTCCCCCTVH Alignment: DVAGGGGGADD VBGGTGTGGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 116 dyCTGCyTCyc Reverse Complement Reverse Complement Backward 1 11 0.0510757 Consensus sequence (original motif): DHCTGCYTCHB Consensus sequence (reverse complement motif): BHGAKGCAGHH Alignment: BHGAKGCAGHH VBGGTGTGGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 111 Motif name: ccCCmCaCCCCcc Consensus sequence (original motif): HBCCCCACCCCBH Consensus sequence (reverse complement motif): DBGGGGTGGGGBD ************************************************************************ Best Matches for Motif ID 111 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 98 myyCCCACmTGCmyr Original Motif Original Motif Backward 1 13 0.0348277 Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD Alignment: HBCCCCACMTGCMHV --HBCCCCACCCCBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 59 Motif 59 Original Motif Original Motif Forward 2 13 0.0360633 Consensus sequence (original motif): CTBCCTCHSYCYCC Consensus sequence (reverse complement motif): GGMGKSHGAGGBAG Alignment: CTBCCTCHSYCYCC -HBCCCCACCCCBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 103 csCCaGCTCCCgs Original Motif Original Motif Backward 1 13 0.0413801 Consensus sequence (original motif): BBCCAGCTCCCVB Consensus sequence (reverse complement motif): BVGGGAGCTGGBB Alignment: BBCCAGCTCCCVB HBCCCCACCCCBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Original Motif Original Motif Backward 3 13 0.0432691 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC ---------------HBCCCCACCCCBH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 122 hsCCAGGCCTGGsr Original Motif Reverse Complement Forward 1 13 0.0554645 Consensus sequence (original motif): HVCCAGGCCTGGBD Consensus sequence (reverse complement motif): HBCCAGGCCTGGVD Alignment: HBCCAGGCCTGGVD HBCCCCACCCCBH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 112 Motif name: ctGAGTkTGAgg Consensus sequence (original motif): VBGAGTKTGADD Consensus sequence (reverse complement motif): HHTCARACTCVV ************************************************************************ Best Matches for Motif ID 112 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 121 ctGAGTCATCkb Reverse Complement Reverse Complement Backward 1 12 0.00842365 Consensus sequence (original motif): HDGAGTCATCDB Consensus sequence (reverse complement motif): BHGATGACTCDD Alignment: BHGATGACTCDD HHTCARACTCVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 111 ccCCmCaCCCCcc Original Motif Reverse Complement Backward 2 12 0.0219353 Consensus sequence (original motif): HBCCCCACCCCBH Consensus sequence (reverse complement motif): DBGGGGTGGGGBD Alignment: DBGGGGTGGGGBD VBGAGTKTGADD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 98 myyCCCACmTGCmyr Reverse Complement Original Motif Backward 3 12 0.0363368 Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD Alignment: HBCCCCACMTGCMHV -HHTCARACTCVV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Reverse Complement Original Motif Backward 16 12 0.0370187 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC ---HHTCARACTCVV--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Reverse Complement Original Motif Forward 1 12 0.0389051 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: BBCCAGCTCMBD HHTCARACTCVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 113 Motif name: htCTGyKTCbt Consensus sequence (original motif): HBCTGYTTCBH Consensus sequence (reverse complement motif): HVGAAMCAGVH ************************************************************************ Best Matches for Motif ID 113 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 116 dyCTGCyTCyc Original Motif Original Motif Forward 1 11 0 Consensus sequence (original motif): DHCTGCYTCHB Consensus sequence (reverse complement motif): BHGAKGCAGHH Alignment: DHCTGCYTCHB HBCTGYTTCBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Original Motif Original Motif Forward 1 11 0.0453878 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: DHATKTTTAHH HBCTGYTTCBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 114 awAACAcAAwa Original Motif Reverse Complement Backward 1 11 0.0496817 Consensus sequence (original motif): DDAACACAADV Consensus sequence (reverse complement motif): BDTTGTGTTDD Alignment: BDTTGTGTTDD HBCTGYTTCBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 121 ctGAGTCATCkb Reverse Complement Original Motif Backward 2 11 0.0512287 Consensus sequence (original motif): HDGAGTCATCDB Consensus sequence (reverse complement motif): BHGATGACTCDD Alignment: HDGAGTCATCDB HVGAAMCAGVH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Reverse Complement Reverse Complement Backward 1 11 0.0525328 Consensus sequence (original motif): KBDTRTTTRTTT Consensus sequence (reverse complement motif): AAAMAAAMADBY Alignment: AAAMAAAMADBY -HVGAAMCAGVH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 114 Motif name: awAACAcAAwa Consensus sequence (original motif): DDAACACAADV Consensus sequence (reverse complement motif): BDTTGTGTTDD ************************************************************************ Best Matches for Motif ID 114 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 60 Motif 60 Original Motif Original Motif Forward 2 11 0.0409581 Consensus sequence (original motif): AADAAAAMAAAAAM Consensus sequence (reverse complement motif): YTTTTTRTTTTDTT Alignment: AADAAAAMAAAAAM -DDAACACAADV-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 71 Evi1 Reverse Complement Reverse Complement Backward 4 11 0.0441291 Consensus sequence (original motif): AAGAYAAGATAABA Consensus sequence (reverse complement motif): TBTTATCTTMTCTT Alignment: TBTTATCTTMTCTT BDTTGTGTTDD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 67 FOXI1 Reverse Complement Original Motif Backward 1 11 0.0515608 Consensus sequence (original motif): KBDTRTTTRTTT Consensus sequence (reverse complement motif): AAAMAAAMADBY Alignment: KBDTRTTTRTTT -BDTTGTGTTDD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 76 Sox2 Reverse Complement Original Motif Backward 2 11 0.0542339 Consensus sequence (original motif): CCWTTGTYATGCAAA Consensus sequence (reverse complement motif): TTTGCATMACAAWGG Alignment: CCWTTGTYATGCAAA ---BDTTGTGTTDD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 117 yaCATAYACay Reverse Complement Reverse Complement Backward 1 11 0.0554944 Consensus sequence (original motif): HVCATACACAH Consensus sequence (reverse complement motif): DTGTGTATGBD Alignment: DTGTGTATGBD BDTTGTGTTDD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 115 Motif name: ysCmAGCACwy Consensus sequence (original motif): HVCMAGCACHH Consensus sequence (reverse complement motif): DHGTGCTRGVH ************************************************************************ Best Matches for Motif ID 115 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Original Motif Original Motif Backward 2 11 0.00720731 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: BBCCAGCTCMBD HVCMAGCACHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 117 yaCATAYACay Original Motif Original Motif Forward 1 11 0.0367273 Consensus sequence (original motif): HVCATACACAH Consensus sequence (reverse complement motif): DTGTGTATGBD Alignment: HVCATACACAH HVCMAGCACHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 103 csCCaGCTCCCgs Original Motif Original Motif Forward 1 11 0.0374067 Consensus sequence (original motif): BBCCAGCTCCCVB Consensus sequence (reverse complement motif): BVGGGAGCTGGBB Alignment: BBCCAGCTCCCVB HVCMAGCACHH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 123 asMAAGCTTKst Original Motif Original Motif Forward 1 11 0.0385747 Consensus sequence (original motif): HBCAAGCTTGVD Consensus sequence (reverse complement motif): DVCAAGCTTGBH Alignment: HBCAAGCTTGVD HVCMAGCACHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 102 ssCkGGYCCCsg Reverse Complement Reverse Complement Backward 1 11 0.0395809 Consensus sequence (original motif): BBCKGGCCCCVV Consensus sequence (reverse complement motif): VVGGGGCCRGBB Alignment: VVGGGGCCRGBB -DHGTGCTRGVH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 116 Motif name: dyCTGCyTCyc Consensus sequence (original motif): DHCTGCYTCHB Consensus sequence (reverse complement motif): BHGAKGCAGHH ************************************************************************ Best Matches for Motif ID 116 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 113 htCTGyKTCbt Original Motif Original Motif Forward 1 11 0 Consensus sequence (original motif): HBCTGYTTCBH Consensus sequence (reverse complement motif): HVGAAMCAGVH Alignment: HBCTGYTTCBH DHCTGCYTCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 121 ctGAGTCATCkb Reverse Complement Original Motif Backward 2 11 0.0409177 Consensus sequence (original motif): HDGAGTCATCDB Consensus sequence (reverse complement motif): BHGATGACTCDD Alignment: HDGAGTCATCDB BHGAKGCAGHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 110 cmCCACACCcm Reverse Complement Reverse Complement Backward 1 11 0.0482758 Consensus sequence (original motif): HVCCACACCBV Consensus sequence (reverse complement motif): VBGGTGTGGBD Alignment: VBGGTGTGGBD BHGAKGCAGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 102 ssCkGGYCCCsg Original Motif Original Motif Forward 1 11 0.0492303 Consensus sequence (original motif): BBCKGGCCCCVV Consensus sequence (reverse complement motif): VVGGGGCCRGBB Alignment: BBCKGGCCCCVV DHCTGCYTCHB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Original Motif Original Motif Backward 1 11 0.0496606 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: BBCCAGCTCMBD -DHCTGCYTCHB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 117 Motif name: yaCATAYACay Consensus sequence (original motif): HVCATACACAH Consensus sequence (reverse complement motif): DTGTGTATGBD ************************************************************************ Best Matches for Motif ID 117 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 109 aaCAAAAACaa Reverse Complement Reverse Complement Backward 1 11 0.0144352 Consensus sequence (original motif): HHCAAAAACHH Consensus sequence (reverse complement motif): HHGTTTTTGHH Alignment: HHGTTTTTGHH DTGTGTATGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 75 FOXF2 Reverse Complement Reverse Complement Backward 3 11 0.0390604 Consensus sequence (original motif): BHADSGTAAACAAD Consensus sequence (reverse complement motif): DTTGTTTACSBTBB Alignment: DTTGTTTACSBTBB -DTGTGTATGBD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 112 ctGAGTkTGAgg Original Motif Reverse Complement Forward 1 11 0.0405823 Consensus sequence (original motif): VBGAGTKTGADD Consensus sequence (reverse complement motif): HHTCARACTCVV Alignment: HHTCARACTCVV HVCATACACAH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 115 ysCmAGCACwy Original Motif Original Motif Forward 1 11 0.0423793 Consensus sequence (original motif): HVCMAGCACHH Consensus sequence (reverse complement motif): DHGTGCTRGVH Alignment: HVCMAGCACHH HVCATACACAH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 58 Motif 58 Original Motif Original Motif Forward 1 11 0.0462842 Consensus sequence (original motif): CACACACACACACA Consensus sequence (reverse complement motif): TGTGTGTGTGTGTG Alignment: CACACACACACACA HVCATACACAH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 118 Motif name: yrCACATGCATGTGyr Consensus sequence (original motif): HVCACATGCATGTGBD Consensus sequence (reverse complement motif): DVCACATGCATGTGBH ************************************************************************ Best Matches for Motif ID 118 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 98 myyCCCACmTGCmyr Original Motif Original Motif Backward 1 15 0.0676289 Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD Alignment: -HBCCCCACMTGCMHV HVCACATGCATGTGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 2 58 Motif 58 Original Motif Original Motif Backward 1 14 0.573876 Consensus sequence (original motif): CACACACACACACA Consensus sequence (reverse complement motif): TGTGTGTGTGTGTG Alignment: --CACACACACACACA HVCACATGCATGTGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 80 Pou5f1 Original Motif Reverse Complement Forward 3 13 1.06805 Consensus sequence (original motif): CWTTGTHATGCAAAT Consensus sequence (reverse complement motif): ATTTGCATHACAAWG Alignment: ATTTGCATHACAAWG--- --HVCACATGCATGTGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 76 Sox2 Reverse Complement Original Motif Forward 3 13 1.07558 Consensus sequence (original motif): CCWTTGTYATGCAAA Consensus sequence (reverse complement motif): TTTGCATMACAAWGG Alignment: CCWTTGTYATGCAAA--- --DVCACATGCATGTGBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 126 yvTGCAGsCAcg Original Motif Original Motif Forward 1 12 1.55231 Consensus sequence (original motif): BVTGCAGSCABV Consensus sequence (reverse complement motif): VBTGSCTGCAVB Alignment: BVTGCAGSCABV---- HVCACATGCATGTGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 119 Motif name: cbCCAGCTCmyk Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB ************************************************************************ Best Matches for Motif ID 119 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 103 csCCaGCTCCCgs Original Motif Original Motif Backward 2 12 0.00141375 Consensus sequence (original motif): BBCCAGCTCCCVB Consensus sequence (reverse complement motif): BVGGGAGCTGGBB Alignment: BBCCAGCTCCCVB BBCCAGCTCMBD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 123 asMAAGCTTKst Reverse Complement Reverse Complement Backward 1 12 0.0040263 Consensus sequence (original motif): HBCAAGCTTGVD Consensus sequence (reverse complement motif): DVCAAGCTTGBH Alignment: DVCAAGCTTGBH HBYGAGCTGGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 122 hsCCAGGCCTGGsr Original Motif Original Motif Backward 3 12 0.0363393 Consensus sequence (original motif): HVCCAGGCCTGGBD Consensus sequence (reverse complement motif): HBCCAGGCCTGGVD Alignment: HVCCAGGCCTGGBD BBCCAGCTCMBD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 102 ssCkGGYCCCsg Original Motif Original Motif Backward 1 12 0.0378472 Consensus sequence (original motif): BBCKGGCCCCVV Consensus sequence (reverse complement motif): VVGGGGCCRGBB Alignment: BBCKGGCCCCVV BBCCAGCTCMBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 111 ccCCmCaCCCCcc Original Motif Original Motif Backward 1 12 0.0419313 Consensus sequence (original motif): HBCCCCACCCCBH Consensus sequence (reverse complement motif): DBGGGGTGGGGBD Alignment: HBCCCCACCCCBH -BBCCAGCTCMBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 120 Motif name: wtTTTwAAAaw Consensus sequence (original motif): HHTTTWAAADD Consensus sequence (reverse complement motif): DDTTTWAAAHH ************************************************************************ Best Matches for Motif ID 120 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 108 wwATkTTTAww Original Motif Reverse Complement Forward 1 11 0.0769117 Consensus sequence (original motif): DHATKTTTAHH Consensus sequence (reverse complement motif): HHTAAARATHD Alignment: HHTAAARATHD HHTTTWAAADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 75 FOXF2 Reverse Complement Reverse Complement Forward 1 11 0.0772648 Consensus sequence (original motif): BHADSGTAAACAAD Consensus sequence (reverse complement motif): DTTGTTTACSBTBB Alignment: DTTGTTTACSBTBB DDTTTWAAAHH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 66 Lhx3 Reverse Complement Reverse Complement Forward 3 11 0.0876632 Consensus sequence (original motif): WAATTAATTAWYB Consensus sequence (reverse complement motif): BMWTAATTAATTW Alignment: BMWTAATTAATTW --DDTTTWAAAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 62 TBP Original Motif Original Motif Forward 1 11 0.0881502 Consensus sequence (original motif): STATAAAWRVVVVBV Consensus sequence (reverse complement motif): VBVVVVMWTTTATAS Alignment: STATAAAWRVVVVBV HHTTTWAAADD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 114 awAACAcAAwa Original Motif Reverse Complement Backward 1 11 0.090069 Consensus sequence (original motif): DDAACACAADV Consensus sequence (reverse complement motif): BDTTGTGTTDD Alignment: BDTTGTGTTDD HHTTTWAAADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 121 Motif name: ctGAGTCATCkb Consensus sequence (original motif): HDGAGTCATCDB Consensus sequence (reverse complement motif): BHGATGACTCDD ************************************************************************ Best Matches for Motif ID 121 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 112 ctGAGTkTGAgg Reverse Complement Reverse Complement Backward 1 12 0.0322402 Consensus sequence (original motif): VBGAGTKTGADD Consensus sequence (reverse complement motif): HHTCARACTCVV Alignment: HHTCARACTCVV BHGATGACTCDD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 122 hsCCAGGCCTGGsr Original Motif Reverse Complement Backward 2 12 0.0510995 Consensus sequence (original motif): HVCCAGGCCTGGBD Consensus sequence (reverse complement motif): HBCCAGGCCTGGVD Alignment: HBCCAGGCCTGGVD -HDGAGTCATCDB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 102 ssCkGGYCCCsg Reverse Complement Original Motif Forward 1 12 0.0569923 Consensus sequence (original motif): BBCKGGCCCCVV Consensus sequence (reverse complement motif): VVGGGGCCRGBB Alignment: BBCKGGCCCCVV BHGATGACTCDD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 123 asMAAGCTTKst Original Motif Reverse Complement Backward 1 12 0.0601978 Consensus sequence (original motif): HBCAAGCTTGVD Consensus sequence (reverse complement motif): DVCAAGCTTGBH Alignment: DVCAAGCTTGBH HDGAGTCATCDB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Reverse Complement Original Motif Forward 11 12 0.0641337 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC ----------BHGATGACTCDD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 122 Motif name: hsCCAGGCCTGGsr Consensus sequence (original motif): HVCCAGGCCTGGBD Consensus sequence (reverse complement motif): HBCCAGGCCTGGVD ************************************************************************ Best Matches for Motif ID 122 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 98 myyCCCACmTGCmyr Original Motif Original Motif Backward 2 14 0.0170832 Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD Alignment: HBCCCCACMTGCMHV HVCCAGGCCTGGBD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 118 yrCACATGCATGTGyr Reverse Complement Reverse Complement Forward 2 14 0.0217283 Consensus sequence (original motif): HVCACATGCATGTGBD Consensus sequence (reverse complement motif): DVCACATGCATGTGBH Alignment: DVCACATGCATGTGBH -HBCCAGGCCTGGVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Reverse Complement Original Motif Forward 9 14 0.0375854 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC --------HBCCAGGCCTGGVD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 103 csCCaGCTCCCgs Reverse Complement Original Motif Backward 1 13 0.516252 Consensus sequence (original motif): BBCCAGCTCCCVB Consensus sequence (reverse complement motif): BVGGGAGCTGGBB Alignment: -BBCCAGCTCCCVB HBCCAGGCCTGGVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 111 ccCCmCaCCCCcc Original Motif Reverse Complement Forward 1 13 0.531063 Consensus sequence (original motif): HBCCCCACCCCBH Consensus sequence (reverse complement motif): DBGGGGTGGGGBD Alignment: DBGGGGTGGGGBD- HVCCAGGCCTGGBD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 123 Motif name: asMAAGCTTKst Consensus sequence (original motif): HBCAAGCTTGVD Consensus sequence (reverse complement motif): DVCAAGCTTGBH ************************************************************************ Best Matches for Motif ID 123 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Reverse Complement Reverse Complement Backward 1 12 0 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: HBYGAGCTGGBB DVCAAGCTTGBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 122 hsCCAGGCCTGGsr Reverse Complement Reverse Complement Forward 2 12 0.025923 Consensus sequence (original motif): HVCCAGGCCTGGBD Consensus sequence (reverse complement motif): HBCCAGGCCTGGVD Alignment: HBCCAGGCCTGGVD -DVCAAGCTTGBH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 103 csCCaGCTCCCgs Original Motif Original Motif Forward 1 12 0.0387894 Consensus sequence (original motif): BBCCAGCTCCCVB Consensus sequence (reverse complement motif): BVGGGAGCTGGBB Alignment: BBCCAGCTCCCVB HBCAAGCTTGVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 71 Evi1 Original Motif Reverse Complement Forward 3 12 0.0417163 Consensus sequence (original motif): AAGAYAAGATAABA Consensus sequence (reverse complement motif): TBTTATCTTMTCTT Alignment: TBTTATCTTMTCTT --HBCAAGCTTGVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 121 ctGAGTCATCkb Original Motif Reverse Complement Forward 1 12 0.0518025 Consensus sequence (original motif): HDGAGTCATCDB Consensus sequence (reverse complement motif): BHGATGACTCDD Alignment: BHGATGACTCDD HBCAAGCTTGVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 124 Motif name: cswGGGCCCwsg Consensus sequence (original motif): VVWGGGCCCWBB Consensus sequence (reverse complement motif): BBWGGGCCCWVV ************************************************************************ Best Matches for Motif ID 124 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 102 ssCkGGYCCCsg Original Motif Original Motif Backward 1 12 0.0170635 Consensus sequence (original motif): BBCKGGCCCCVV Consensus sequence (reverse complement motif): VVGGGGCCRGBB Alignment: BBCKGGCCCCVV VVWGGGCCCWBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Original Motif Reverse Complement Backward 1 12 0.0400014 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: HBYGAGCTGGBB VVWGGGCCCWBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 126 yvTGCAGsCAcg Original Motif Original Motif Forward 1 12 0.0429334 Consensus sequence (original motif): BVTGCAGSCABV Consensus sequence (reverse complement motif): VBTGSCTGCAVB Alignment: BVTGCAGSCABV VVWGGGCCCWBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 122 hsCCAGGCCTGGsr Original Motif Original Motif Backward 2 12 0.0467887 Consensus sequence (original motif): HVCCAGGCCTGGBD Consensus sequence (reverse complement motif): HBCCAGGCCTGGVD Alignment: HVCCAGGCCTGGBD -VVWGGGCCCWBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 103 csCCaGCTCCCgs Reverse Complement Original Motif Backward 1 12 0.0482771 Consensus sequence (original motif): BBCCAGCTCCCVB Consensus sequence (reverse complement motif): BVGGGAGCTGGBB Alignment: BBCCAGCTCCCVB -BBWGGGCCCWVV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 125 Motif name: wwTAATwwATTAww Consensus sequence (original motif): DDTAATWWATTAHH Consensus sequence (reverse complement motif): HHTAATWWATTADD ************************************************************************ Best Matches for Motif ID 125 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 68 HNF1A Original Motif Original Motif Backward 1 14 0.0447485 Consensus sequence (original motif): GGTTAATDATTAMC Consensus sequence (reverse complement motif): GYTAATDATTAACC Alignment: GGTTAATDATTAMC DDTAATWWATTAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 81 Pax4 Reverse Complement Reverse Complement Backward 2 14 0.0620115 Consensus sequence (original motif): RAAWAWTWDCMVHHVBBHHHVHMHCMCYMC Consensus sequence (reverse complement motif): GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM Alignment: GRKGRGDRHVHDDVBBHHBRGDWAWTWTTM ---------------HHTAATWWATTADD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 75 FOXF2 Reverse Complement Original Motif Forward 1 14 0.0703085 Consensus sequence (original motif): BHADSGTAAACAAD Consensus sequence (reverse complement motif): DTTGTTTACSBTBB Alignment: BHADSGTAAACAAD HHTAATWWATTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 62 TBP Reverse Complement Original Motif Backward 2 14 0.0724742 Consensus sequence (original motif): STATAAAWRVVVVBV Consensus sequence (reverse complement motif): VBVVVVMWTTTATAS Alignment: STATAAAWRVVVVBV HHTAATWWATTADD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 3 76 Sox2 Original Motif Reverse Complement Backward 1 14 0.0728076 Consensus sequence (original motif): CCWTTGTYATGCAAA Consensus sequence (reverse complement motif): TTTGCATMACAAWGG Alignment: TTTGCATMACAAWGG -DDTAATWWATTAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 126 Motif name: yvTGCAGsCAcg Consensus sequence (original motif): BVTGCAGSCABV Consensus sequence (reverse complement motif): VBTGSCTGCAVB ************************************************************************ Best Matches for Motif ID 126 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 104 cgCCCwGGScsg Original Motif Original Motif Backward 1 12 0.0284753 Consensus sequence (original motif): VDCCCWGGGCBB Consensus sequence (reverse complement motif): BBGCCCWGGGHV Alignment: VDCCCWGGGCBB BVTGCAGSCABV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 118 yrCACATGCATGTGyr Original Motif Original Motif Forward 1 12 0.0340354 Consensus sequence (original motif): HVCACATGCATGTGBD Consensus sequence (reverse complement motif): DVCACATGCATGTGBH Alignment: HVCACATGCATGTGBD BVTGCAGSCABV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 98 myyCCCACmTGCmyr Original Motif Reverse Complement Backward 1 12 0.0351986 Consensus sequence (original motif): HBCCCCACMTGCMHV Consensus sequence (reverse complement motif): VDRGCAYGTGGGGVD Alignment: VDRGCAYGTGGGGVD ---BVTGCAGSCABV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 124 cswGGGCCCwsg Original Motif Original Motif Forward 1 12 0.0357442 Consensus sequence (original motif): VVWGGGCCCWBB Consensus sequence (reverse complement motif): BBWGGGCCCWVV Alignment: VVWGGGCCCWBB BVTGCAGSCABV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 103 csCCaGCTCCCgs Reverse Complement Original Motif Forward 1 12 0.0445722 Consensus sequence (original motif): BBCCAGCTCCCVB Consensus sequence (reverse complement motif): BVGGGAGCTGGBB Alignment: BBCCAGCTCCCVB VBTGSCTGCAVB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 4 Motif ID: 127 Motif name: rryCAGGGAyw Consensus sequence (original motif): DDYCAGGGAHD Consensus sequence (reverse complement motif): DHTCCCTGMDD ************************************************************************ Best Matches for Motif ID 127 (Highest to Lowest) ************************************************************************ Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 99 graGGGGGArr Original Motif Original Motif Backward 1 11 0.0283253 Consensus sequence (original motif): DVAGGGGGADD Consensus sequence (reverse complement motif): HDTCCCCCTVH Alignment: DVAGGGGGADD DDYCAGGGAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 126 yvTGCAGsCAcg Reverse Complement Reverse Complement Forward 1 11 0.0326364 Consensus sequence (original motif): BVTGCAGSCABV Consensus sequence (reverse complement motif): VBTGSCTGCAVB Alignment: VBTGSCTGCAVB DHTCCCTGMDD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 104 cgCCCwGGScsg Original Motif Original Motif Forward 2 11 0.0424475 Consensus sequence (original motif): VDCCCWGGGCBB Consensus sequence (reverse complement motif): BBGCCCWGGGHV Alignment: VDCCCWGGGCBB -DDYCAGGGAHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 122 hsCCAGGCCTGGsr Original Motif Original Motif Backward 4 11 0.0451737 Consensus sequence (original motif): HVCCAGGCCTGGBD Consensus sequence (reverse complement motif): HBCCAGGCCTGGVD Alignment: HVCCAGGCCTGGBD DDYCAGGGAHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset # Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score 4 119 cbCCAGCTCmyk Original Motif Original Motif Forward 1 11 0.0514394 Consensus sequence (original motif): BBCCAGCTCMBD Consensus sequence (reverse complement motif): HBYGAGCTGGBB Alignment: BBCCAGCTCMBD DDYCAGGGAHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-18-2018 16:26:48 Runtime: 858.069 seconds MOTIFSIM is written by Ngoc Tam L. 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