Best Matches in Database for Each Motif (Highest to Lowest)
| Dataset #: 1 | Motif ID: 1 | Motif name: TFW1 |
| Original motif | Reverse complement motif |
| Consensus sequence: GTCGCG | Consensus sequence: CGCGAC |
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Best Matches for Motif ID 1 (Highest to Lowest)
| Motif ID: | UP00065 |
| Motif name: | Zfp161_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 9 |
| Number of overlap: | 6 |
| Similarity score: | 0 |
Alignment:
GYCGCGCARBGCVB
GTCGCG--------
| Original motif | Reverse complement motif |
| Consensus sequence: GYCGCGCARBGCVB | Consensus sequence: VVGCVMTGCGCGKC |
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| Motif ID: | UP00060 |
| Motif name: | Max_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 6 |
| Similarity score: | 0.00875457 |
Alignment:
HDGTCGCGTGDCVB
--GTCGCG------
| Original motif | Reverse complement motif |
| Consensus sequence: BBGHCACGCGACDD | Consensus sequence: HDGTCGCGTGDCVB |
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| Motif ID: | UP00003 |
| Motif name: | E2F3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 6 |
| Number of overlap: | 6 |
| Similarity score: | 0.0102952 |
Alignment:
WHSGCGCGCCHTDHB
----CGCGAC-----
| Original motif | Reverse complement motif |
| Consensus sequence: VHDADGGCGCGCSHW | Consensus sequence: WHSGCGCGCCHTDHB |
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| Motif ID: | UP00526 |
| Motif name: | Foxn1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 6 |
| Similarity score: | 0.0119605 |
Alignment:
WHVBVVMACGCGCGTCDYHWDH
----------CGCGAC------
| Original motif | Reverse complement motif |
| Consensus sequence: WHVBVVMACGCGCGTCDYHWDH | Consensus sequence: HDWHMHGACGCGCGTRBVVBHW |
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| Motif ID: | UP00527 |
| Motif name: | Foxn4_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 10 |
| Number of overlap: | 6 |
| Similarity score: | 0.014366 |
Alignment:
VDWDARRGACGCGGWHGGAKHV
-------GTCGCG---------
| Original motif | Reverse complement motif |
| Consensus sequence: VDWDARRGACGCGGWHGGAKHV | Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV |
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| Motif ID: | UP00065 |
| Motif name: | Zfp161_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 10 |
| Number of overlap: | 6 |
| Similarity score: | 0.0143989 |
Alignment:
DMMDGMGCGCGCGCHD
---------CGCGAC-
| Original motif | Reverse complement motif |
| Consensus sequence: DDGCGCGCGCRCHYRD | Consensus sequence: DMMDGMGCGCGCGCHD |
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| Motif ID: | UP00001 |
| Motif name: | E2F2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 6 |
| Similarity score: | 0.0147239 |
Alignment:
HHVGCGCGCCKTDHB
----CGCGAC-----
| Original motif | Reverse complement motif |
| Consensus sequence: VHDARGGCGCGCVHH | Consensus sequence: HHVGCGCGCCKTDHB |
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| Motif ID: | UP00002 |
| Motif name: | Sp4_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 6 |
| Similarity score: | 0.0222574 |
Alignment:
HHDGBCACGCCTWDB
---GTCGCG------
| Original motif | Reverse complement motif |
| Consensus sequence: BDWAGGCGTGBCHHD | Consensus sequence: HHDGBCACGCCTWDB |
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| Motif ID: | UP00049 |
| Motif name: | Sp100_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 6 |
| Similarity score: | 0.0300795 |
Alignment:
BBCGTCGHBTAAWDB
---GTCGCG------
| Original motif | Reverse complement motif |
| Consensus sequence: BBCGTCGHBTAAWDB | Consensus sequence: BDWTTAVDCGACGBV |
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| Motif ID: | UP00000 |
| Motif name: | Smad3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 6 |
| Similarity score: | 0.0317992 |
Alignment:
BHBHDTGGCGGGGBDHD
----GTCGCG-------
| Original motif | Reverse complement motif |
| Consensus sequence: DHHBCCCCGCCAHHBHB | Consensus sequence: BHBHDTGGCGGGGBDHD |
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| Dataset #: 1 | Motif ID: 2 | Motif name: TFW2 |
| Original motif | Reverse complement motif |
| Consensus sequence: SCGCGCGG | Consensus sequence: CCGCGCGS |
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Best Matches for Motif ID 2 (Highest to Lowest)
| Motif ID: | UP00526 |
| Motif name: | Foxn1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 8 |
| Number of overlap: | 8 |
| Similarity score: | 0 |
Alignment:
HDWHMHGACGCGCGTRBVVBHW
-------CCGCGCGS-------
| Original motif | Reverse complement motif |
| Consensus sequence: WHVBVVMACGCGCGTCDYHWDH | Consensus sequence: HDWHMHGACGCGCGTRBVVBHW |
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| Motif ID: | UP00065 |
| Motif name: | Zfp161_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 8 |
| Similarity score: | 0.00228411 |
Alignment:
VVGCVMTGCGCGKC
-----CCGCGCGS-
| Original motif | Reverse complement motif |
| Consensus sequence: GYCGCGCARBGCVB | Consensus sequence: VVGCVMTGCGCGKC |
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| Motif ID: | UP00003 |
| Motif name: | E2F3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 8 |
| Similarity score: | 0.00337853 |
Alignment:
WHSGCGCGCCHTDHB
-CCGCGCGS------
| Original motif | Reverse complement motif |
| Consensus sequence: VHDADGGCGCGCSHW | Consensus sequence: WHSGCGCGCCHTDHB |
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| Motif ID: | UP00001 |
| Motif name: | E2F2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 8 |
| Similarity score: | 0.00399923 |
Alignment:
HHVGCGCGCCKTDHB
-CCGCGCGS------
| Original motif | Reverse complement motif |
| Consensus sequence: VHDARGGCGCGCVHH | Consensus sequence: HHVGCGCGCCKTDHB |
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| Motif ID: | UP00065 |
| Motif name: | Zfp161_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 8 |
| Similarity score: | 0.00484534 |
Alignment:
DDGCGCGCGCRCHYRD
----CCGCGCGS----
| Original motif | Reverse complement motif |
| Consensus sequence: DDGCGCGCGCRCHYRD | Consensus sequence: DMMDGMGCGCGCGCHD |
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| Motif ID: | UP00526 |
| Motif name: | Foxn1_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 8 |
| Similarity score: | 0.0149577 |
Alignment:
DDRMHBACGCGYGCGTDGBBDB
--------SCGCGCGG------
| Original motif | Reverse complement motif |
| Consensus sequence: DDRMHBACGCGYGCGTDGBBDB | Consensus sequence: BDVBCDACGCKCGCGTBHRKHD |
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| Motif ID: | UP00400 |
| Motif name: | Zif268 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 6 |
| Number of overlap: | 8 |
| Similarity score: | 0.0194485 |
Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
-----SCGCGCGG----------
| Original motif | Reverse complement motif |
| Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV | Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB |
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| Motif ID: | UP00022 |
| Motif name: | Zfp740_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 6 |
| Number of overlap: | 8 |
| Similarity score: | 0.0230299 |
Alignment:
HVKDCCGGGGGGWADDD
----SCGCGCGG-----
| Original motif | Reverse complement motif |
| Consensus sequence: DDDTWCCCCCCGGDRVH | Consensus sequence: HVKDCCGGGGGGWADDD |
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| Motif ID: | UP00007 |
| Motif name: | Egr1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 6 |
| Number of overlap: | 8 |
| Similarity score: | 0.0247841 |
Alignment:
HCCGCCCCCGCAHB
-----CCGCGCGS-
| Original motif | Reverse complement motif |
| Consensus sequence: HCCGCCCCCGCAHB | Consensus sequence: VHTGCGGGGGCGGH |
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| Motif ID: | UP00007 |
| Motif name: | Egr1_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 7 |
| Number of overlap: | 8 |
| Similarity score: | 0.0249557 |
Alignment:
BHHDTCCCACTCBDBV
------CCGCGCGS--
| Original motif | Reverse complement motif |
| Consensus sequence: BBHBGAGTGGGAHHDB | Consensus sequence: BHHDTCCCACTCBDBV |
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| Dataset #: 1 | Motif ID: 3 | Motif name: TFW3 |
| Original motif | Reverse complement motif |
| Consensus sequence: CGGCYBCGCG | Consensus sequence: CGCGBMGCCG |
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Best Matches for Motif ID 3 (Highest to Lowest)
| Motif ID: | UP00400 |
| Motif name: | Zif268 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 8 |
| Number of overlap: | 10 |
| Similarity score: | 0.0331859 |
Alignment:
VVVDHHTGCGYGGGCGDHVHHTB
------CGCGBMGCCG-------
| Original motif | Reverse complement motif |
| Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV | Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB |
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| Motif ID: | UP00007 |
| Motif name: | Egr1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0342114 |
Alignment:
HCCGCCCCCGCAHB
--CGGCYBCGCG--
| Original motif | Reverse complement motif |
| Consensus sequence: HCCGCCCCCGCAHB | Consensus sequence: VHTGCGGGGGCGGH |
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| Motif ID: | UP00527 |
| Motif name: | Foxn4_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 12 |
| Number of overlap: | 10 |
| Similarity score: | 0.0356548 |
Alignment:
DBBVDDDRTRGCGTCBBYTHGA
-----------CGGCYBCGCG-
| Original motif | Reverse complement motif |
| Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA | Consensus sequence: TCDAMVBGACGCMAKDDDVBBD |
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| Motif ID: | UP00526 |
| Motif name: | Foxn1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 11 |
| Number of overlap: | 10 |
| Similarity score: | 0.041792 |
Alignment:
HDWHMHGACGCGCGTRBVVBHW
----------CGCGBMGCCG--
| Original motif | Reverse complement motif |
| Consensus sequence: WHVBVVMACGCGCGTCDYHWDH | Consensus sequence: HDWHMHGACGCGCGTRBVVBHW |
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| Motif ID: | UP00065 |
| Motif name: | Zfp161_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 6 |
| Number of overlap: | 10 |
| Similarity score: | 0.041904 |
Alignment:
DDGCGCGCGCRCHYRD
-----CGCGBMGCCG-
| Original motif | Reverse complement motif |
| Consensus sequence: DDGCGCGCGCRCHYRD | Consensus sequence: DMMDGMGCGCGCGCHD |
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| Motif ID: | UP00065 |
| Motif name: | Zfp161_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 10 |
| Similarity score: | 0.0419429 |
Alignment:
VVGCVMTGCGCGKC
CGGCYBCGCG----
| Original motif | Reverse complement motif |
| Consensus sequence: GYCGCGCARBGCVB | Consensus sequence: VVGCVMTGCGCGKC |
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| Motif ID: | UP00002 |
| Motif name: | Sp4_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 10 |
| Similarity score: | 0.0475178 |
Alignment:
BDWAGGCGTGBCHHD
----CGCGBMGCCG-
| Original motif | Reverse complement motif |
| Consensus sequence: BDWAGGCGTGBCHHD | Consensus sequence: HHDGBCACGCCTWDB |
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| Motif ID: | UP00000 |
| Motif name: | Smad3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 10 |
| Similarity score: | 0.0490044 |
Alignment:
DHHBCCCCGCCAHHBHB
-------CGGCYBCGCG
| Original motif | Reverse complement motif |
| Consensus sequence: DHHBCCCCGCCAHHBHB | Consensus sequence: BHBHDTGGCGGGGBDHD |
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| Motif ID: | UP00087 |
| Motif name: | Tcfap2c_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0499902 |
Alignment:
DTHSCCKSMGGSHHW
--CGGCYBCGCG---
| Original motif | Reverse complement motif |
| Consensus sequence: WHHSCCYSRGGSDAD | Consensus sequence: DTHSCCKSMGGSHHW |
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| Motif ID: | UP00005 |
| Motif name: | Tcfap2a_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 10 |
| Similarity score: | 0.0500462 |
Alignment:
DTMSCCKSMGGSHDW
--CGGCYBCGCG---
| Original motif | Reverse complement motif |
| Consensus sequence: WDHSCCYSRGGSRAD | Consensus sequence: DTMSCCKSMGGSHDW |
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| Dataset #: 1 | Motif ID: 4 | Motif name: TFF1 |
| Original motif | Reverse complement motif |
| Consensus sequence: CGGVGCCGCVGC | Consensus sequence: GCVGCGGCBCCG |
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Best Matches for Motif ID 4 (Highest to Lowest)
| Motif ID: | UP00003 |
| Motif name: | E2F3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 12 |
| Similarity score: | 0.0423593 |
Alignment:
HBHWYGGCGCCAMDVBB
----CGGVGCCGCVGC-
| Original motif | Reverse complement motif |
| Consensus sequence: HBHWYGGCGCCAMDVBB | Consensus sequence: BBBDYTGGCGCCKWDBD |
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| Motif ID: | UP00001 |
| Motif name: | E2F2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 12 |
| Similarity score: | 0.046515 |
Alignment:
HVBWYGGCGCCAADVBB
----CGGVGCCGCVGC-
| Original motif | Reverse complement motif |
| Consensus sequence: HVBWYGGCGCCAADVBB | Consensus sequence: BBBDTTGGCGCCKWVVD |
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| Motif ID: | UP00088 |
| Motif name: | Plagl1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 12 |
| Similarity score: | 0.0472704 |
Alignment:
BHDGGGGSSCCCCBVV
GCVGCGGCBCCG----
| Original motif | Reverse complement motif |
| Consensus sequence: BHDGGGGSSCCCCBVV | Consensus sequence: VBVGGGGSSCCCCHHV |
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| Motif ID: | UP00099 |
| Motif name: | Ascl2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 12 |
| Similarity score: | 0.0476914 |
Alignment:
BBYVVCAGCTGCBVHHD
----GCVGCGGCBCCG-
| Original motif | Reverse complement motif |
| Consensus sequence: BBYVVCAGCTGCBVHHD | Consensus sequence: HHDVVGCAGCTGVBKVB |
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| Motif ID: | UP00043 |
| Motif name: | Bcl6b_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 12 |
| Similarity score: | 0.0508178 |
Alignment:
HBBBCCGCCCCWHHHV
GCVGCGGCBCCG----
| Original motif | Reverse complement motif |
| Consensus sequence: HBBBCCGCCCCWHHHV | Consensus sequence: BHHHWGGGGCGGBBVH |
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| Motif ID: | UP00033 |
| Motif name: | Zfp410_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 12 |
| Similarity score: | 0.0533422 |
Alignment:
BHHBHCCGCCCCDHHHH
-GCVGCGGCBCCG----
| Original motif | Reverse complement motif |
| Consensus sequence: BHHBHCCGCCCCDHHHH | Consensus sequence: HHHHDGGGGCGGDBHDV |
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| Motif ID: | UP00539 |
| Motif name: | Gli2_v016060_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 9 |
| Number of overlap: | 12 |
| Similarity score: | 0.0561199 |
Alignment:
HDBABCGBKRGYGGCGMSBHAK
--------CGGVGCCGCVGC--
| Original motif | Reverse complement motif |
| Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH | Consensus sequence: HDBABCGBKRGYGGCGMSBHAK |
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| Motif ID: | UP00002 |
| Motif name: | Sp4_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 12 |
| Similarity score: | 0.0577556 |
Alignment:
BDHHMCGCCCCCTHVBB
-GCVGCGGCBCCG----
| Original motif | Reverse complement motif |
| Consensus sequence: BDHHMCGCCCCCTHVBB | Consensus sequence: BVVHAGGGGGCGRDHHB |
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| Motif ID: | UP00000 |
| Motif name: | Smad3_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 12 |
| Similarity score: | 0.0577695 |
Alignment:
BHBHDTGGCGGGGBDHD
GCVGCGGCBCCG-----
| Original motif | Reverse complement motif |
| Consensus sequence: DHHBCCCCGCCAHHBHB | Consensus sequence: BHBHDTGGCGGGGBDHD |
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| Motif ID: | UP00540 |
| Motif name: | Gli3_v015681_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.0581164 |
Alignment:
DVTTVVCVYGGHGGYCHHDMYB
--------CGGVGCCGCVGC--
| Original motif | Reverse complement motif |
| Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB | Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH |
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| Dataset #: 2 | Motif ID: 13 | Motif name: tkAAATAATAtw |
| Original motif | Reverse complement motif |
| Consensus sequence: HDAAATAATAHW | Consensus sequence: WHTATTATTTDH |
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Best Matches for Motif ID 13 (Highest to Lowest)
| Motif ID: | UP00121 |
| Motif name: | Hoxd10 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.00353196 |
Alignment:
HDDDATTTTATTKVRDB
---WHTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: VDKVYAATAAAATDDDH | Consensus sequence: HDDDATTTTATTKVRDB |
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| Motif ID: | UP00244 |
| Motif name: | Tlx2 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 12 |
| Similarity score: | 0.00646023 |
Alignment:
BAATHAATTAATAAHWW
---HDAAATAATAHW--
| Original motif | Reverse complement motif |
| Consensus sequence: BAATHAATTAATAAHWW | Consensus sequence: WWDTTATTAATTHATTV |
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| Motif ID: | UP00051 |
| Motif name: | Sox8_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 12 |
| Similarity score: | 0.0120674 |
Alignment:
DDDHDAACAATWBATDD
--HDAAATAATAHW---
| Original motif | Reverse complement motif |
| Consensus sequence: DDATBWATTGTTHHDDD | Consensus sequence: DDDHDAACAATWBATDD |
 |
 |
| Motif ID: | UP00180 |
| Motif name: | Hoxd13 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.0123772 |
Alignment:
HDHHTTTTATTKKHDD
--WHTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: HDHYYAATAAAAHHHH | Consensus sequence: HDHHTTTTATTKKHDD |
 |
 |
| Motif ID: | UP00037 |
| Motif name: | Zfp105_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.0129559 |
Alignment:
HHHTTRTTDTTTKDH
--WHTATTATTTDH-
| Original motif | Reverse complement motif |
| Consensus sequence: HDYAAAHAAMAADHD | Consensus sequence: HHHTTRTTDTTTKDH |
 |
 |
| Motif ID: | UP00064 |
| Motif name: | Sox18_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 12 |
| Similarity score: | 0.0130138 |
Alignment:
HHDHABAACAATHBWV
---HDAAATAATAHW-
| Original motif | Reverse complement motif |
| Consensus sequence: BWBHATTGTTBTHDHH | Consensus sequence: HHDHABAACAATHBWV |
 |
 |
| Motif ID: | UP00255 |
| Motif name: | Dbx1 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 12 |
| Similarity score: | 0.0131034 |
Alignment:
DHDBTAWTAATTHAKTH
--WHTATTATTTDH---
| Original motif | Reverse complement motif |
| Consensus sequence: HARTHAATTAWTAVDHD | Consensus sequence: DHDBTAWTAATTHAKTH |
 |
 |
| Motif ID: | UP00024 |
| Motif name: | Glis2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 12 |
| Similarity score: | 0.0140433 |
Alignment:
BVTTTAHTAATADH
WHTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: HDTATTAHTAAAVV | Consensus sequence: BVTTTAHTAATADH |
 |
 |
| Motif ID: | UP00075 |
| Motif name: | Sox15_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.0143532 |
Alignment:
DHVKMWATTGTTHDHDH
---WHTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: HDDDDAACAATWRRBHD | Consensus sequence: DHVKMWATTGTTHDHDH |
 |
 |
| Motif ID: | UP00096 |
| Motif name: | Sox13_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.014607 |
Alignment:
DHDRGAACAATWWDHW
--HDAAATAATAHW--
| Original motif | Reverse complement motif |
| Consensus sequence: DHDRGAACAATWWDHW | Consensus sequence: WHDWWATTGTTCKDHD |
 |
 |
| Dataset #: 2 | Motif ID: 16 | Motif name: kcACCTGCAgc |
| Original motif | Reverse complement motif |
| Consensus sequence: BCACCTGCABC | Consensus sequence: GBTGCAGGTGB |
 |
 |
Best Matches for Motif ID 16 (Highest to Lowest)
| Motif ID: | UP00070 |
| Motif name: | Gcm1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0 |
Alignment:
DHDVATGCGGGTHVVH
---GBTGCAGGTGB--
| Original motif | Reverse complement motif |
| Consensus sequence: HVVHACCCGCATVDHD | Consensus sequence: DHDVATGCGGGTHVVH |
 |
 |
| Motif ID: | UP00031 |
| Motif name: | Zbtb3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.000503863 |
Alignment:
BBBAVTGCAGTGBBVDD
---GBTGCAGGTGB---
| Original motif | Reverse complement motif |
| Consensus sequence: DDBBBCACTGCABTBBB | Consensus sequence: BBBAVTGCAGTGBBVDD |
 |
 |
| Motif ID: | UP00046 |
| Motif name: | Tcfe2a_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 6 |
| Number of overlap: | 11 |
| Similarity score: | 0.000557448 |
Alignment:
DHDBHGCACCTGBDDVB
-----BCACCTGCABC-
| Original motif | Reverse complement motif |
| Consensus sequence: VBHHVCAGGTGCDVDHD | Consensus sequence: DHDBHGCACCTGBDDVB |
 |
 |
| Motif ID: | UP00099 |
| Motif name: | Ascl2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.00842747 |
Alignment:
BBYVVCAGCTGCBVHHD
----BCACCTGCABC--
| Original motif | Reverse complement motif |
| Consensus sequence: BBYVVCAGCTGCBVHHD | Consensus sequence: HHDVVGCAGCTGVBKVB |
| |
|
| Motif ID: | UP00420 |
| Motif name: | Elk3 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 11 |
| Similarity score: | 0.0111732 |
Alignment:
DVBBACCGGAAGYDVVV
--BCACCTGCABC----
| Original motif | Reverse complement motif |
| Consensus sequence: DVBBACCGGAAGYDVVV | Consensus sequence: VBVDMCTTCCGGTVBVD |
 |
 |
| Motif ID: | UP00050 |
| Motif name: | Bhlhb2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 9 |
| Number of overlap: | 11 |
| Similarity score: | 0.0122671 |
Alignment:
ACHRBHDTCCACGTGYAHHBMHM
--------BCACCTGCABC----
| Original motif | Reverse complement motif |
| Consensus sequence: YDYBDHTMCACGTGGADDBMDGT | Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM |
 |
 |
| Motif ID: | UP00092 |
| Motif name: | Myb_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.015733 |
Alignment:
BDACCAACTGCCRBBH
---BCACCTGCABC--
| Original motif | Reverse complement motif |
| Consensus sequence: BDACCAACTGCCRBBH | Consensus sequence: DBVKGGCAGTTGGTHB |
 |
 |
| Motif ID: | UP00236 |
| Motif name: | Irx2 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.0163141 |
Alignment:
WVWDDTACATGTADDDW
---GBTGCAGGTGB---
| Original motif | Reverse complement motif |
| Consensus sequence: WDDDTACATGTADDWBW | Consensus sequence: WVWDDTACATGTADDDW |
 |
 |
| Motif ID: | UP00223 |
| Motif name: | Irx3_0920.1 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 5 |
| Number of overlap: | 11 |
| Similarity score: | 0.0165255 |
Alignment:
DDWWBTACATGTADDDD
----BCACCTGCABC--
| Original motif | Reverse complement motif |
| Consensus sequence: DDDDTACATGTAVWWHD | Consensus sequence: DDWWBTACATGTADDDD |
 |
 |
| Motif ID: | UP00057 |
| Motif name: | Zic2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 11 |
| Similarity score: | 0.0169178 |
Alignment:
HHDCVCAGCAKGVVD
BCACCTGCABC----
| Original motif | Reverse complement motif |
| Consensus sequence: HHDCVCAGCAKGVVD | Consensus sequence: DVBCYTGCTGBGDDD |
 |
 |
| Dataset #: 2 | Motif ID: 17 | Motif name: wwAAATAATAtw |
| Original motif | Reverse complement motif |
| Consensus sequence: HDAAATAATADD | Consensus sequence: DDTATTATTTDH |
 |
 |
Best Matches for Motif ID 17 (Highest to Lowest)
| Motif ID: | UP00244 |
| Motif name: | Tlx2 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 12 |
| Similarity score: | 0.00576686 |
Alignment:
WWDTTATTAATTHATTV
--DDTATTATTTDH---
| Original motif | Reverse complement motif |
| Consensus sequence: BAATHAATTAATAAHWW | Consensus sequence: WWDTTATTAATTHATTV |
| |
|
| Motif ID: | UP00121 |
| Motif name: | Hoxd10 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 12 |
| Similarity score: | 0.00673636 |
Alignment:
HDDDATTTTATTKVRDB
---DDTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: VDKVYAATAAAATDDDH | Consensus sequence: HDDDATTTTATTKVRDB |
| |
|
| Motif ID: | UP00180 |
| Motif name: | Hoxd13 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.00685179 |
Alignment:
HDHHTTTTATTKKHDD
--DDTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: HDHYYAATAAAAHHHH | Consensus sequence: HDHHTTTTATTKKHDD |
| |
|
| Motif ID: | UP00073 |
| Motif name: | Foxa2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 1 |
| Number of overlap: | 12 |
| Similarity score: | 0.0108327 |
Alignment:
VVDAATAACAAAVVB
HDAAATAATADD---
| Original motif | Reverse complement motif |
| Consensus sequence: VVDAATAACAAAVVB | Consensus sequence: BVVTTTGTTATTDBB |
 |
 |
| Motif ID: | UP00134 |
| Motif name: | Hoxb13 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.0121723 |
Alignment:
VDHWTTTTATTGGDKB
--DDTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: VRHCCAATAAAAWHHV | Consensus sequence: VDHWTTTTATTGGDKB |
 |
 |
| Motif ID: | UP00255 |
| Motif name: | Dbx1 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 12 |
| Similarity score: | 0.0133808 |
Alignment:
DHDBTAWTAATTHAKTH
--DDTATTATTTDH---
| Original motif | Reverse complement motif |
| Consensus sequence: HARTHAATTAWTAVDHD | Consensus sequence: DHDBTAWTAATTHAKTH |
| |
|
| Motif ID: | UP00034 |
| Motif name: | Sox7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 12 |
| Similarity score: | 0.0144702 |
Alignment:
HHBDHDDAACAATDRHHHHHBW
----HDAAATAATADD------
| Original motif | Reverse complement motif |
| Consensus sequence: HHBDHDDAACAATDRHHHHHBW | Consensus sequence: WBHHHHHMDATTGTTHDHDVHH |
 |
 |
| Motif ID: | UP00051 |
| Motif name: | Sox8_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 12 |
| Similarity score: | 0.0145614 |
Alignment:
DDATBWATTGTTHHDDD
---DDTATTATTTDH--
| Original motif | Reverse complement motif |
| Consensus sequence: DDATBWATTGTTHHDDD | Consensus sequence: DDDHDAACAATWBATDD |
| |
|
| Motif ID: | UP00024 |
| Motif name: | Glis2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 12 |
| Similarity score: | 0.0148858 |
Alignment:
BVTTTAHTAATADH
--HDAAATAATADD
| Original motif | Reverse complement motif |
| Consensus sequence: HDTATTAHTAAAVV | Consensus sequence: BVTTTAHTAATADH |
| |
|
| Motif ID: | UP00096 |
| Motif name: | Sox13_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 12 |
| Similarity score: | 0.014968 |
Alignment:
DHDRGAACAATWWDHW
--HDAAATAATADD--
| Original motif | Reverse complement motif |
| Consensus sequence: DHDRGAACAATWWDHW | Consensus sequence: WHDWWATTGTTCKDHD |
| |
|
| Dataset #: 2 | Motif ID: 19 | Motif name: wsTACwGTAsw |
| Original motif | Reverse complement motif |
| Consensus sequence: HVTACWGTABD | Consensus sequence: DBTACWGTAVH |
 |
 |
Best Matches for Motif ID 19 (Highest to Lowest)
| Motif ID: | UP00052 |
| Motif name: | Osr2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 11 |
| Similarity score: | 0 |
Alignment:
HHHHGCTACKGTHVHH
----DBTACWGTAVH-
| Original motif | Reverse complement motif |
| Consensus sequence: HHVHACRGTAGCHHHD | Consensus sequence: HHHHGCTACKGTHVHH |
 |
 |
| Motif ID: | UP00027 |
| Motif name: | Osr1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 11 |
| Similarity score: | 0.00480574 |
Alignment:
DHBHGCTACKGTHDHH
----DBTACWGTAVH-
| Original motif | Reverse complement motif |
| Consensus sequence: HHDHACRGTAGCHVHD | Consensus sequence: DHBHGCTACKGTHDHH |
 |
 |
| Motif ID: | UP00031 |
| Motif name: | Zbtb3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.0165381 |
Alignment:
BBBAVTGCAGTGBBVDD
---HVTACWGTABD---
| Original motif | Reverse complement motif |
| Consensus sequence: DDBBBCACTGCABTBBB | Consensus sequence: BBBAVTGCAGTGBBVDD |
| |
|
| Motif ID: | UP00034 |
| Motif name: | Sox7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 7 |
| Number of overlap: | 11 |
| Similarity score: | 0.0248017 |
Alignment:
HHBDHDDAACAATDRHHHHHBW
-----DBTACWGTAVH------
| Original motif | Reverse complement motif |
| Consensus sequence: HHBDHDDAACAATDRHHHHHBW | Consensus sequence: WBHHHHHMDATTGTTHDHDVHH |
| |
|
| Motif ID: | UP00023 |
| Motif name: | Sox30_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.0294174 |
Alignment:
HHHHMHATTGTTBDHD
---HVTACWGTABD--
| Original motif | Reverse complement motif |
| Consensus sequence: DHDBAACAATDRHHHH | Consensus sequence: HHHHMHATTGTTBDHD |
 |
 |
| Motif ID: | UP00075 |
| Motif name: | Sox15_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.0301544 |
Alignment:
DHVKMWATTGTTHDHDH
---HVTACWGTABD---
| Original motif | Reverse complement motif |
| Consensus sequence: HDDDDAACAATWRRBHD | Consensus sequence: DHVKMWATTGTTHDHDH |
| |
|
| Motif ID: | UP00016 |
| Motif name: | Sry_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 11 |
| Similarity score: | 0.0310991 |
Alignment:
VHVHDATTGTTMHDDDH
--DBTACWGTAVH----
| Original motif | Reverse complement motif |
| Consensus sequence: HHDHDRAACAATDDVHV | Consensus sequence: VHVHDATTGTTMHDDDH |
 |
 |
| Motif ID: | UP00064 |
| Motif name: | Sox18_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 11 |
| Similarity score: | 0.031364 |
Alignment:
BWBHATTGTTBTHDHH
-DBTACWGTAVH----
| Original motif | Reverse complement motif |
| Consensus sequence: BWBHATTGTTBTHDHH | Consensus sequence: HHDHABAACAATHBWV |
| |
|
| Motif ID: | UP00092 |
| Motif name: | Myb_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.0314236 |
Alignment:
HDDDHAACCGTTAHHHD
---DBTACWGTAVH---
| Original motif | Reverse complement motif |
| Consensus sequence: HDDDHAACCGTTAHHHD | Consensus sequence: DHHHTAACGGTTHHHDH |
 |
 |
| Motif ID: | UP00071 |
| Motif name: | Sox21_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 11 |
| Similarity score: | 0.0319794 |
Alignment:
VVYBWATTGTTCVBHDV
--HVTACWGTABD----
| Original motif | Reverse complement motif |
| Consensus sequence: VVYBWATTGTTCVBHDV | Consensus sequence: BDDBVGAACAATWBMBV |
 |
 |
| Dataset #: 2 | Motif ID: 20 | Motif name: dhACATTCTkh |
| Original motif | Reverse complement motif |
| Consensus sequence: DHACATTCTGH | Consensus sequence: HCAGAATGTHD |
 |
 |
Best Matches for Motif ID 20 (Highest to Lowest)
| Motif ID: | UP00038 |
| Motif name: | Spdef_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.00581553 |
Alignment:
VDWYTAGGATGTHVDH
---HCAGAATGTHD--
| Original motif | Reverse complement motif |
| Consensus sequence: DDBHACATCCTAKWDV | Consensus sequence: VDWYTAGGATGTHVDH |
 |
 |
| Motif ID: | UP00528 |
| Motif name: | Foxm1_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 8 |
| Number of overlap: | 11 |
| Similarity score: | 0.00582895 |
Alignment:
DCATDBTGHGCATKMTTBRSWR
-------DHACATTCTGH----
| Original motif | Reverse complement motif |
| Consensus sequence: MWSMBAARRATGCDCABHATGD | Consensus sequence: DCATDBTGHGCATKMTTBRSWR |
 |
 |
| Motif ID: | UP00023 |
| Motif name: | Sox30_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.00613057 |
Alignment:
HHHHMHATTGTTBDHD
--DHACATTCTGH---
| Original motif | Reverse complement motif |
| Consensus sequence: DHDBAACAATDRHHHH | Consensus sequence: HHHHMHATTGTTBDHD |
| |
|
| Motif ID: | UP00034 |
| Motif name: | Sox7_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 6 |
| Number of overlap: | 11 |
| Similarity score: | 0.0119275 |
Alignment:
WBHHHHHMDATTGTTHDHDVHH
-----DHACATTCTGH------
| Original motif | Reverse complement motif |
| Consensus sequence: HHBDHDDAACAATDRHHHHHBW | Consensus sequence: WBHHHHHMDATTGTTHDHDVHH |
| |
|
| Motif ID: | UP00030 |
| Motif name: | Sox11_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.0122803 |
Alignment:
HHBTMCTTTGTTMDDVH
--DHACATTCTGH----
| Original motif | Reverse complement motif |
| Consensus sequence: HBDDRAACAAAGRABHH | Consensus sequence: HHBTMCTTTGTTMDDVH |
 |
 |
| Motif ID: | UP00250 |
| Motif name: | Irx5 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.0132772 |
Alignment:
WVTDHWACATGTWHDDD
----DHACATTCTGH--
| Original motif | Reverse complement motif |
| Consensus sequence: DDDHWACATGTWHDABW | Consensus sequence: WVTDHWACATGTWHDDD |
 |
 |
| Motif ID: | UP00057 |
| Motif name: | Zic2_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 1 |
| Number of overlap: | 11 |
| Similarity score: | 0.0141401 |
Alignment:
HHDCVCAGCAKGVVD
----HCAGAATGTHD
| Original motif | Reverse complement motif |
| Consensus sequence: HHDCVCAGCAKGVVD | Consensus sequence: DVBCYTGCTGBGDDD |
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| Motif ID: | UP00062 |
| Motif name: | Sox4_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.0143902 |
Alignment:
HHBBMCTTTGTTHDDBH
--DHACATTCTGH----
| Original motif | Reverse complement motif |
| Consensus sequence: HBDDDAACAAAGRVBHH | Consensus sequence: HHBBMCTTTGTTHDDBH |
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| Motif ID: | UP00004 |
| Motif name: | Sox14_secondary |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 2 |
| Number of overlap: | 11 |
| Similarity score: | 0.0151959 |
Alignment:
BKBASACAATRGHBB
---HCAGAATGTHD-
| Original motif | Reverse complement motif |
| Consensus sequence: BKBASACAATRGHBB | Consensus sequence: BBDCMATTGTSTBRB |
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| Motif ID: | UP00064 |
| Motif name: | Sox18_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 6 |
| Number of overlap: | 11 |
| Similarity score: | 0.015273 |
Alignment:
BWBHATTGTTBTHDHH
DHACATTCTGH-----
| Original motif | Reverse complement motif |
| Consensus sequence: BWBHATTGTTBTHDHH | Consensus sequence: HHDHABAACAATHBWV |
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|
| Dataset #: 2 | Motif ID: 21 | Motif name: wbgTAAATAww |
| Original motif | Reverse complement motif |
| Consensus sequence: DBGTAAATAHD | Consensus sequence: DHTATTTACBD |
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Best Matches for Motif ID 21 (Highest to Lowest)
| Motif ID: | UP00242 |
| Motif name: | Hoxc8 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Reverse Complement |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0 |
Alignment:
AHDHTAATTACHHHHV
--DHTATTTACBD---
| Original motif | Reverse complement motif |
| Consensus sequence: BHDDDGTAATTAHHDT | Consensus sequence: AHDHTAATTACHHHHV |
 |
 |
| Motif ID: | UP00073 |
| Motif name: | Foxa2_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.00453517 |
Alignment:
HHWAWGTAAAYAAAVDB
---DBGTAAATAHD---
| Original motif | Reverse complement motif |
| Consensus sequence: HHWAWGTAAAYAAAVDB | Consensus sequence: BDVTTTKTTTACWTWHH |
 |
 |
| Motif ID: | UP00039 |
| Motif name: | Foxj3_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.00490457 |
Alignment:
HDHADGTAAACAAAVVH
---DBGTAAATAHD---
| Original motif | Reverse complement motif |
| Consensus sequence: HDHADGTAAACAAAVVH | Consensus sequence: DVVTTTGTTTACDTHDH |
 |
 |
| Motif ID: | UP00041 |
| Motif name: | Foxj1_primary |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Original Motif |
| Direction: | Backward |
| Position number: | 5 |
| Number of overlap: | 11 |
| Similarity score: | 0.00656547 |
Alignment:
HDHRTAAACAAAHDDD
-DBGTAAATAHD----
| Original motif | Reverse complement motif |
| Consensus sequence: HDHRTAAACAAAHDDD | Consensus sequence: DDDHTTTGTTTAMHDH |
 |
 |
| Motif ID: | UP00182 |
| Motif name: | Hoxa6 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.0086354 |
Alignment:
DTHHGGTAATTAYCYT
---DBGTAAATAHD--
| Original motif | Reverse complement motif |
| Consensus sequence: AMGKTAATTACCHHAD | Consensus sequence: DTHHGGTAATTAYCYT |
 |
 |
| Motif ID: | UP00260 |
| Motif name: | Hoxc6 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.0092156 |
Alignment:
BRHVKTAATTAMBDVVD
---DHTATTTACBD---
| Original motif | Reverse complement motif |
| Consensus sequence: BRHVKTAATTAMBDVVD | Consensus sequence: DBBDVYTAATTARBHKB |
 |
 |
| Motif ID: | UP00164 |
| Motif name: | Hoxa7_2668.2 |
| Species: | Mus musculus |
| Matching format of first motif: | Reverse Complement |
| Matching format of second motif: | Original Motif |
| Direction: | Forward |
| Position number: | 4 |
| Number of overlap: | 11 |
| Similarity score: | 0.00942246 |
Alignment:
VVHDDTAATTAHTDDBC
---DHTATTTACBD---
| Original motif | Reverse complement motif |
| Consensus sequence: VVHDDTAATTAHTDDBC | Consensus sequence: GBDDAHTAATTADHHVV |
 |
 |
| Motif ID: | UP00259 |
| Motif name: | Hoxb6 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 11 |
| Similarity score: | 0.00949005 |
Alignment:
VDVGTAATTACBDAWW
-DBGTAAATAHD----
| Original motif | Reverse complement motif |
| Consensus sequence: WWTDBGTAATTACVDB | Consensus sequence: VDVGTAATTACBDAWW |
 |
 |
| Motif ID: | UP00254 |
| Motif name: | Pou2f1 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 2 |
| Number of overlap: | 11 |
| Similarity score: | 0.00998499 |
Alignment:
WABKTAATTAHKHHHD
-DBGTAAATAHD----
| Original motif | Reverse complement motif |
| Consensus sequence: DHDHRHTAATTARBTW | Consensus sequence: WABKTAATTAHKHHHD |
 |
 |
| Motif ID: | UP00110 |
| Motif name: | Dlx4 |
| Species: | Mus musculus |
| Matching format of first motif: | Original Motif |
| Matching format of second motif: | Reverse Complement |
| Direction: | Forward |
| Position number: | 3 |
| Number of overlap: | 11 |
| Similarity score: | 0.0107458 |
Alignment:
GHVRGTAATTATDVVGV
--DBGTAAATAHD----
| Original motif | Reverse complement motif |
| Consensus sequence: BCVVDATAATTACMVHC | Consensus sequence: GHVRGTAATTATDVVGV |
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