**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # W-ChIPMotifs_DM230.txt 11 1 RSAT_peak-motifs_DM230.txt 10 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** *************************************************************** Combined Motifs for Top Best Match Motif ID 1 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 TFW3 Original Motif Original Motif GTCGCG CGGCYBCGCG GBCGCGCGGC Direction: Backward Position #: 1 Overlap #: 6 Alignment: ----GTCGCG CGGCYBCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Reverse Complement GBCGCGCGGC SGGTCACGTGACCS SGGTCRCGYGRCCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GBCGCGCGGC-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Original Motif SGGTCRCGYGRCCS GGMGGRGGCGGVGC GGVBSRSGCGGCSS Direction: Forward Position #: 1 Overlap #: 14 Alignment: SGGTCRCGYGRCCS GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF1 Original Motif Original Motif GGVBSRSGCGGCSS CGGVGCCGCVGC SGGVGVCGCGGCSS Direction: Forward Position #: 1 Overlap #: 12 Alignment: GGVBSRSGCGGCSS CGGVGCCGCVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Original Motif Original Motif SGGVGVCGCGGCSS SCGCGCGG SSGCGCSGCGGCSS Direction: Forward Position #: 1 Overlap #: 8 Alignment: SGGVGVCGCGGCSS SCGCGCGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Reverse Complement SSGCGCSGCGGCSS BBGGGGCGGGGCVD SSGBGSGGCGGSGCVD Direction: Forward Position #: 3 Overlap #: 12 Alignment: SSGCGCSGCGGCSS-- --BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement SSGBGSGGCGGSGCVD BBGGGGCGGGGCGGB SSGBGGGGSSGGGSCGGB Direction: Forward Position #: 4 Overlap #: 13 Alignment: SSGBGSGGCGGSGCVD-- ---BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Reverse Complement BCCGSCCCSSCCCCBCSS CHCCBCCKMCTCCKCM CHCVBCCBSSYCCBVCSS Direction: Forward Position #: 1 Overlap #: 16 Alignment: BCCGSCCCSSCCCCBCSS CHCCBCCKMCTCCKCM-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif CHCVBCCBSSYCCBVCSS CYYCBBCYYYTCCHCCTYYY CHCCBSCYCCYCCBCCBBYY Direction: Forward Position #: 1 Overlap #: 18 Alignment: CHCVBCCBSSYCCBVCSS-- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Reverse Complement Reverse Complement KKBBGGVGGMGGKGSBGGDG GBTGCAGGTGB KGBTGCAGGTGBKGSBGGDG Direction: Forward Position #: 2 Overlap #: 11 Alignment: KKBBGGVGGMGGKGSBGGDG -GBTGCAGGTGB-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh Combined Motif Reverse Complement Original Motif CHCCBSCYBCACCTGCABCY DHACATTCTGH YDHACMTKCWKHCHCCBSCY Direction: Backward Position #: 2 Overlap #: 11 Alignment: CHCCBSCYBCACCTGCABCY --------DHACATTCTGH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 2 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 csGCCCCGCCCCsc Reverse Complement Original Motif CCGCGCGS HVGCCCCGCCCCBB BCCGCSCSBHVGCC Direction: Backward Position #: 2 Overlap #: 8 Alignment: -----CCGCGCGS- HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Reverse Complement GGCVDBSGSGCGGB BBGGGGCGGGGCGGB GGCBGGGGCGSGGCGGB Direction: Forward Position #: 3 Overlap #: 12 Alignment: GGCVDBSGSGCGGB--- --BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement BCCGCCSCGCCCCBGCC GCVCCGCCMCCYCC BCCGCCCCGCCCCSBCC Direction: Forward Position #: 4 Overlap #: 14 Alignment: BCCGCCSCGCCCCBGCC ---GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF1 Original Motif Reverse Complement BCCGCCCCGCCCCSBCC GCVGCGGCBCCG GCCGCSSCSCCVCSBCC Direction: Forward Position #: 1 Overlap #: 12 Alignment: BCCGCCCCGCCCCSBCC GCVGCGGCBCCG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 Combined Motif Reverse Complement Reverse Complement GGBSGVGGSGSSGCGGC CGCGBMGCCG GGBSGCGGVGCCGCGGC Direction: Forward Position #: 4 Overlap #: 10 Alignment: GGBSGVGGSGSSGCGGC ---CGCGBMGCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif GGBSGCGGVGCCGCGGC RGRGGAGRRGGHGGDG GGVGGVGGRGSVGSDGC Direction: Forward Position #: 1 Overlap #: 16 Alignment: GGBSGCGGVGCCGCGGC RGRGGAGRRGGHGGDG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif GCHSCVSCKCCBCCBCC CYYCBBCYYYTCCHCCTYYY GCHCCBSCBCCYCBCCCCCTYYY Direction: Forward Position #: 4 Overlap #: 14 Alignment: GCHSCVSCKCCBCCBCC------ ---CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Reverse Complement Original Motif KKKAGGGGGBGMGGBGSBGGDGC SGGTCACGTGACCS KKKAGGGGGBGMGGBGSBGGKSMCGTGACCS Direction: Forward Position #: 18 Overlap #: 6 Alignment: KKKAGGGGGBGMGGBGSBGGDGC-------- -----------------SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Combined Motif Reverse Complement Reverse Complement SGGTCACGYSRCCBSCBCCYCBCCCCCTYYY CGCGAC SGGTCACGCGACCBSCBCCYCBCCCCCTYYY Direction: Forward Position #: 7 Overlap #: 6 Alignment: SGGTCACGYSRCCBSCBCCYCBCCCCCTYYY ------CGCGAC------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Reverse Complement SGGTCACGCGACCBSCBCCYCBCCCCCTYYY GBTGCAGGTGB SSKKCASGTGVCCBSCBCCYCBCCCCCTYYY Direction: Forward Position #: 1 Overlap #: 11 Alignment: SGGTCACGCGACCBSCBCCYCBCCCCCTYYY GBTGCAGGTGB-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 3 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 TFF1 Original Motif Original Motif CGGCYBCGCG CGGVGCCGCVGC GCCGGCKCCGCG Direction: Backward Position #: 3 Overlap #: 10 Alignment: CGGCYBCGCG-- CGGVGCCGCVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif GCCGGCKCCGCG GGMGGRGGCGGVGC GCSGGSGVSGCGGVGC Direction: Forward Position #: 3 Overlap #: 10 Alignment: GCCGGCKCCGCG---- --GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Reverse Complement Original Motif GCVCCGCSVCSCCSGC HVGCCCCGCCCCBB SCGCCSCGCCCCCBGC Direction: Forward Position #: 1 Overlap #: 14 Alignment: GCVCCGCSVCSCCSGC HVGCCCCGCCCCBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Original Motif SCGCCSCGCCCCCBGC BCCGCCCCGCCCCBB VCSSCCCSSCCCCBGC Direction: Forward Position #: 1 Overlap #: 15 Alignment: SCGCCSCGCCCCCBGC BCCGCCCCGCCCCBB- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement GCBGGGGSSGGGSSGV KKKAGGDGGAKKMGBBGKMG GCBGGGRSGGGGVBKVGBBGKMG Direction: Forward Position #: 4 Overlap #: 13 Alignment: GCBGGGGSSGGGSSGV------- ---KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Reverse Complement CYYCBBCVYBVCCCCSMCCCBGC CHCCBCCKMCTCCKCM CHCCBSCKCCBCCYCCMCCCBGC Direction: Forward Position #: 1 Overlap #: 16 Alignment: CYYCBBCVYBVCCCCSMCCCBGC CHCCBCCKMCTCCKCM------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Reverse Complement Original Motif GCBGGGRGGMGGVGGYGSVGGDG SGGTCACGTGACCS GCBGGGRGGMGGVGGYGSBGGTSACGTGACCS Direction: Forward Position #: 19 Overlap #: 5 Alignment: GCBGGGRGGMGGVGGYGSVGGDG--------- ------------------SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Original Motif Original Motif GCBGGGRGGMGGVGGYGSBGGTSACGTGACCS SCGCGCGG GCGSGSGGGMGGVGGYGSBGGTSACGTGACCS Direction: Forward Position #: 1 Overlap #: 8 Alignment: GCBGGGRGGMGGVGGYGSBGGTSACGTGACCS SCGCGCGG------------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Reverse Complement Reverse Complement SGGTCACGTSACCBSCKCCBCCYCCCSCSCGC GBTGCAGGTGB SSKKCASGTSDCCBSCKCCBCCYCCCSCSCGC Direction: Forward Position #: 1 Overlap #: 11 Alignment: SGGTCACGTSACCBSCKCCBCCYCCCSCSCGC GBTGCAGGTGB--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 4 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 TFF11 Original Motif Original Motif CGGVGCCGCVGC GGMGGRGGCGGVGC VGGVGSCGSVGCGG Direction: Backward Position #: 1 Overlap #: 12 Alignment: --CGGVGCCGCVGC GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Reverse Complement VGGVGSCGSVGCGG BBGGGGCGGGGCVD VGGGGGCGGGGCGG Direction: Forward Position #: 1 Overlap #: 14 Alignment: VGGVGSCGSVGCGG BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement VGGGGGCGGGGCGG KKKAGGDGGAKKMGBBGKMG VGGGGVSGGGGMGKMGBBGKMG Direction: Forward Position #: 3 Overlap #: 12 Alignment: VGGGGGCGGGGCGG-------- --KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Original Motif CYYCBBCYYCRCCCCSVCCCCV BCCGCCCCGCCCCBB CYYCBBCBCCCCSCCCCBBCCV Direction: Forward Position #: 5 Overlap #: 15 Alignment: CYYCBBCYYCRCCCCSVCCCCV ----BCCGCCCCGCCCCBB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif VGGBBGGGGSGGGGBGBBGKMG RGRGGAGRRGGHGGDG VGGBGGRGGVGGRGSVGGGGMG Direction: Forward Position #: 5 Overlap #: 16 Alignment: VGGBBGGGGSGGGGBGBBGKMG ----RGRGGAGRRGGHGGDG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Original Motif Reverse Complement VGGBGGRGGVGGRGSVGGGGMG SGGTCACGTGACCS VGGBGGRGGVGGRGSVGVGGWSACGTGACCS Direction: Forward Position #: 18 Overlap #: 5 Alignment: VGGBGGRGGVGGRGSVGGGGMG--------- -----------------SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Reverse Complement Original Motif SGGTCACGTSWCCVCVSCMCCBCCMCCBCCV CGGCYBCGCG CGGYCACGYSWCCVCVSCMCCBCCMCCBCCV Direction: Forward Position #: 1 Overlap #: 10 Alignment: SGGTCACGTSWCCVCVSCMCCBCCMCCBCCV CGGCYBCGCG--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Reverse Complement Original Motif VGGBGGRGGVGGRGSVGVGGWSMCGTGKCCG SCGCGCGG BSGSGSGGGVGGRGSVGVGGWSMCGTGKCCG Direction: Forward Position #: 1 Overlap #: 8 Alignment: VGGBGGRGGVGGRGSVGVGGWSMCGTGKCCG SCGCGCGG----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Original Motif Reverse Complement BSGSGSGGGVGGRGSVGVGGWSMCGTGKCCG GBTGCAGGTGB BSGTGCRGGTGVRGSVGVGGWSMCGTGKCCG Direction: Forward Position #: 2 Overlap #: 11 Alignment: BSGSGSGGGVGGRGSVGVGGWSMCGTGKCCG -GBTGCAGGTGB------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Combined Motif Reverse Complement Reverse Complement CGGYCACGYSWCCVCVSCMVCACCKGCACSB CGCGAC CGGYCACGCGACCVCVSCMVCACCKGCACSB Direction: Forward Position #: 7 Overlap #: 6 Alignment: CGGYCACGYSWCCVCVSCMVCACCKGCACSB ------CGCGAC------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 5 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 TFM2 Original Motif Original Motif GGMGGRGGCGGVGC RGRGGAGRRGGHGGDG DGGGAGGRGGVGGVGS Direction: Backward Position #: 3 Overlap #: 14 Alignment: GGMGGRGGCGGVGC-- RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif SCBCCVCCKCCTCCCH CYYCBBCYYYTCCHCCTYYY CCBCCVCCYCYYCCCCTYYY Direction: Forward Position #: 1 Overlap #: 16 Alignment: SCBCCVCCKCCTCCCH---- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Reverse Complement KKKAGGGGKKGMGGVGGBGG BBGGGGCGGGGCGGB KKKDBGGGGCGGGGCGGBGG Direction: Forward Position #: 4 Overlap #: 15 Alignment: KKKAGGGGKKGMGGVGGBGG ---BBGGGGCGGGGCGGB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Reverse Complement Original Motif CCBCCGCCCCGCCCCBDYYY HVGCCCCGCCCCBB CCBCCVSCCCCSCCCCBBYY Direction: Forward Position #: 5 Overlap #: 14 Alignment: CCBCCGCCCCGCCCCBDYYY ----HVGCCCCGCCCCBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Original Motif CCBCCVSCCCCSCCCCBBYY CGGVGCCGCVGC CCBCCGGCSCCGCCSCBBYY Direction: Forward Position #: 5 Overlap #: 12 Alignment: CCBCCVSCCCCSCCCCBBYY ----CGGVGCCGCVGC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Reverse Complement Original Motif KKBBGSGGCGGSGCCGGBGG SGGTCACGTGACCS KKBSGBSRCGKGRCCVGBGG Direction: Forward Position #: 3 Overlap #: 14 Alignment: KKBBGSGGCGGSGCCGGBGG --SGGTCACGTGACCS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Original Motif Reverse Complement KKBSGBSRCGKGRCCVGBGG GBTGCAGGTGB KKGBKGCASGTGVCCVGBGG Direction: Forward Position #: 3 Overlap #: 11 Alignment: KKBSGBSRCGKGRCCVGBGG --GBTGCAGGTGB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Original Motif Original Motif KKGBKGCASGTGVCCVGBGG CGGCYBCGCG SGGCKKCRSGTGVCCVGBGG Direction: Forward Position #: 1 Overlap #: 10 Alignment: KKGBKGCASGTGVCCVGBGG CGGCYBCGCG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Reverse Complement Reverse Complement CCBCVGGBCACSMGYRGCCS CCGCGCGS CCGCSSGBCACSMGYRGCCS Direction: Forward Position #: 1 Overlap #: 8 Alignment: CCBCVGGBCACSMGYRGCCS CCGCGCGS------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Combined Motif Original Motif Original Motif CCGCSSGBCACSMGYRGCCS GTCGCG CSBCGCGBCACSMGYRGCCS Direction: Forward Position #: 2 Overlap #: 6 Alignment: CCGCSSGBCACSMGYRGCCS -GTCGCG------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 6 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 TFM12 Reverse Complement Original Motif CHCCBCCKMCTCCKCM CYYCBBCYYYTCCHCCTYYY CHCCBSCBCCTCCBCCTYYY Direction: Forward Position #: 1 Overlap #: 16 Alignment: CHCCBCCKMCTCCKCM---- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement CHCCBSCBCCTCCBCCTYYY TWVHWWWYTTTYTTTTTHTTTVWBH CHCCBBCHHHTYYTYYTBYYTHTTTVWBH Direction: Forward Position #: 5 Overlap #: 16 Alignment: CHCCBSCBCCTCCBCCTYYY--------- ----TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif CHCCBBCHHHTYYTYYTBYYTHTTTVWBH BCCGCCCCGCCCCBB CHCCKCCCCGYCCYBBTBYYTHTTTVWBH Direction: Forward Position #: 2 Overlap #: 15 Alignment: CHCCBBCHHHTYYTYYTBYYTHTTTVWBH -BCCGCCCCGCCCCBB------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Reverse Complement CHCCKCCCCGYCCYBBTBYYTHTTTVWBH GCVCCGCCMCCYCC SCVCSSCCCSCYCCBBTBYYTHTTTVWBH Direction: Forward Position #: 1 Overlap #: 14 Alignment: CHCCKCCCCGYCCYBBTBYYTHTTTVWBH GCVCCGCCMCCYCC--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc Combined Motif Original Motif Original Motif SCVCSSCCCSCYCCBBTBYYTHTTTVWBH HVGCCCCGCCCCBB SCVCSSCCSCCCCSCCYCBBTHTTTVWBH Direction: Forward Position #: 7 Overlap #: 14 Alignment: SCVCSSCCCSCYCCBBTBYYTHTTTVWBH ------HVGCCCCGCCCCBB--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF1 Original Motif Original Motif SCVCSSCCSCCCCSCCYCBBTHTTTVWBH CGGVGCCGCVGC CGSMSCCGCVGCCCCSCCYCBBTHTTTVWBH Direction: Forward Position #: 3 Overlap #: 10 Alignment: --SCVCSSCCSCCCCSCCYCBBTHTTTVWBH CGGVGCCGCVGC------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 Combined Motif Original Motif Reverse Complement CGSMSCCGCVGCCCCSCCYCBBTHTTTVWBH CGCGBMGCCG CGSMSCCGCGBMSCCGCCYCBBTHTTTVWBH Direction: Forward Position #: 7 Overlap #: 10 Alignment: CGSMSCCGCVGCCCCSCCYCBBTHTTTVWBH ------CGCGBMGCCG--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Original Motif Original Motif CGSMSCCGCGBMSCCGCCYCBBTHTTTVWBH BCACCTGCABC CGSACCYGCRBCSCCGCCYCBBTHTTTVWBH Direction: Forward Position #: 2 Overlap #: 11 Alignment: CGSMSCCGCGBMSCCGCCYCBBTHTTTVWBH -BCACCTGCABC------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Reverse Complement HDWVAAAHAVVGKGGCGGSGBKGCMGGTSCG ABAAAAAAWHAAAAARAW HDWBAAADAAHDDRRMRGVDBKGCMGGTSCG Direction: Forward Position #: 3 Overlap #: 18 Alignment: HDWVAAAHAVVGKGGCGGSGBKGCMGGTSCG --ABAAAAAAWHAAAAARAW----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement HDWBAAADAAHDDRRMRGVDBKGCMGGTSCG TWAAWTTVTGAAAAAHWW THAHAWWVWRADRAAHWDVDBKGCMGGTSCG Direction: Forward Position #: 1 Overlap #: 18 Alignment: HDWBAAADAAHDDRRMRGVDBKGCMGGTSCG TWAAWTTVTGAAAAAHWW------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 7 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 TFM11 Reverse Complement Original Motif ABAAAAAAWHAAAAARAW HDWVAAAHAAAAAMAAAMWWWHBWA WHBWAWBAAADAAADAAAAAVWWHD Direction: Backward Position #: 6 Overlap #: 18 Alignment: --ABAAAAAAWHAAAAARAW----- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif WHBWAWBAAADAAADAAAAAVWWHD ATKAAWTTTTRMAABAHHTW ATDWAWDWWWRAAADAAAWAVWWHD Direction: Forward Position #: 1 Overlap #: 20 Alignment: WHBWAWBAAADAAADAAAAAVWWHD ATKAAWTTTTRMAABAHHTW----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM3 Original Motif Reverse Complement ATDWAWDWWWRAAADAAAWAVWWHD TWAAWTTVTGAAAAAHWW TWAWDTWHTKWWRAAAWAAAWAVWWHD Direction: Forward Position #: 3 Overlap #: 16 Alignment: --ATDWAWDWWWRAAADAAAWAVWWHD TWAAWTTVTGAAAAAHWW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Original Motif BHWWBTWTTTWTTTKWWYAHWADWTWA CYYCBBCYYYTCCHCCTYYY CYBHDBYTYYTYHHYYTHYYAHWADWTWA Direction: Forward Position #: 3 Overlap #: 18 Alignment: --BHWWBTWTTTWTTTKWWYAHWADWTWA CYYCBBCYYYTCCHCCTYYY--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Reverse Complement Reverse Complement TWAWDTWHTKMHAMMHDKAMMAKVDDBMG DDTATTATTTDH DDTAWTATTWDDMHAMMHDKAMMAKVDDBMG Direction: Forward Position #: 3 Overlap #: 10 Alignment: --TWAWDTWHTKMHAMMHDKAMMAKVDDBMG DDTATTATTTDH------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Reverse Complement Reverse Complement CYBHDBYTYYTYHHYYTHYDDWAATAWTADD WHTATTATTTDH CYBHDBHHTATTATTTDHYDDWAATAWTADD Direction: Forward Position #: 7 Overlap #: 12 Alignment: CYBHDBYTYYTYHHYYTHYDDWAATAWTADD ------WHTATTATTTDH------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Reverse Complement Reverse Complement DDTAWTATTWDDMHDAAATAATAHHVDDBMG DHTATTTACBD DHTATTWWHDDDMHDAAATAATAHHVDDBMG Direction: Forward Position #: 1 Overlap #: 11 Alignment: DDTAWTATTWDDMHDAAATAATAHHVDDBMG DHTATTTACBD-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Original Motif Original Motif DHTATTWWHDDDMHDAAATAATAHHVDDBMG DHACATTCTGH DHAYATTYTBHDDMHDAAATAATAHHVDDBMG Direction: Forward Position #: 2 Overlap #: 10 Alignment: -DHTATTWWHDDDMHDAAATAATAHHVDDBMG DHACATTCTGH--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Reverse Complement Reverse Complement CYBHDBHHTATTATTTDHYDDHBAKAATKTHD CHCCBCCKMCTCCKCM CHCCHBCDHMTYMTYHDHYDDHBAKAATKTHD Direction: Forward Position #: 1 Overlap #: 16 Alignment: CYBHDBHHTATTATTTDHYDDHBAKAATKTHD CHCCBCCKMCTCCKCM---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw Combined Motif Reverse Complement Original Motif DHAYATTYTBHDDMHDDKARKAYDDGBHGGDG HVTACWGTABD DHVTAYTGTABDDMHDDKARKAYDDGBHGGDG Direction: Forward Position #: 2 Overlap #: 11 Alignment: DHAYATTYTBHDDMHDDKARKAYDDGBHGGDG -HVTACWGTABD-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 8 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 TFM13 Reverse Complement Original Motif TWAAWTTVTGAAAAAHWW ATKAAWTTTTRMAABAHHTW ATWAAWTTHTGAAAWAHWWW Direction: Forward Position #: 2 Overlap #: 18 Alignment: -TWAAWTTVTGAAAAAHWW- ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Original Motif ATWAAWTTHTGAAAWAHWWW HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAWDAAWWWHWRAAAWAHHWA Direction: Forward Position #: 6 Overlap #: 20 Alignment: -----ATWAAWTTHTGAAAWAHWWW HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement HDWVAAWDAAWWWHWRAAAWAHHWA ABAAAAAAWHAAAAARAW HDWVADWAAAAAWHARAAADAWHWA Direction: Forward Position #: 5 Overlap #: 18 Alignment: HDWVAAWDAAWWWHWRAAAWAHHWA ----ABAAAAAAWHAAAAARAW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Reverse Complement Reverse Complement TWHWTDTTTKTHWTTTTTWDTVWBH DDTATTATTTDH WWTATTWTTTDHWTTTTTWDTVWBH Direction: Forward Position #: 1 Overlap #: 12 Alignment: TWHWTDTTTKTHWTTTTTWDTVWBH DDTATTATTTDH------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tkAAATAATAtw Original Motif Reverse Complement WWTATTWTTTDHWTTTTTWDTVWBH WHTATTATTTDH WHTATTATTTDHWTTTTTWDTVWBH Direction: Forward Position #: 1 Overlap #: 12 Alignment: WWTATTWTTTDHWTTTTTWDTVWBH WHTATTATTTDH------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Original Motif Original Motif WHTATTATTTDHWTTTTTWDTVWBH DHACATTCTGH DHAYATTMTKTDHWTTTTTWDTVWBH Direction: Forward Position #: 2 Overlap #: 10 Alignment: -WHTATTATTTDHWTTTTTWDTVWBH DHACATTCTGH--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Reverse Complement Original Motif HDWVADWAAAAAWHDARARAATKTHD DBGTAAATAHD HHDTAAATAHAAWHDARARAATKTHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: HDWVADWAAAAAWHDARARAATKTHD DBGTAAATAHD--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Original Motif HHDTAAATAHAAWHDARARAATKTHD RGRGGAGRRGGHGGDG DGRRADRARARRRTGDHHDTAAATAHAA Direction: Backward Position #: 3 Overlap #: 14 Alignment: HHDTAAATAHAAWHDARARAATKTHD-- ------------RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wsTACwGTAsw Reverse Complement Original Motif TTHTATTTAHBHDCAKMMTMTMHTKKCH HVTACWGTABD HHTWMWKTAVDHDCAKMMTMTMHTKKCH Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTHTATTTAHBHDCAKMMTMTMHTKKCH HVTACWGTABD----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement DGRRADRARARRRTGDHDVTAYWRWAHH KKKAGGDGGAKKMGBBGKMG KGDDDGDRGADGVKBBDBHKAYWRWAHH Direction: Forward Position #: 1 Overlap #: 20 Alignment: DGRRADRARARRRTGDHDVTAYWRWAHH KKKAGGDGGAKKMGBBGKMG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 9 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 TFM11 Original Motif Reverse Complement CYYCBBCYYYTCCHCCTYYY TWVHWWWYTTTYTTTTTHTTTVWBH TVWBHYHBHDDYYYTTCYHBYTBTT Direction: Backward Position #: 6 Overlap #: 20 Alignment: CYYCBBCYYYTCCHCCTYYY----- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif TVWBHYHBHDDYYYTTCYHBYTBTT WTKTTTTTHWTTTTTTBT THDTTTTBHHTTTTTTYTHBYTBTT Direction: Forward Position #: 1 Overlap #: 18 Alignment: TVWBHYHBHDDYYYTTCYHBYTBTT WTKTTTTTHWTTTTTTBT------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement THDTTTTBHHTTTTTTYTHBYTBTT CHCCBCCKMCTCCKCM THDTTYHBMHBCKHHTCYTHHTBTT Direction: Forward Position #: 6 Overlap #: 16 Alignment: THDTTTTBHHTTTTTTYTHBYTBTT -----CHCCBCCKMCTCCKCM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Reverse Complement AAVADDAKGADDRGBHRBHKAADHA BBGGGGCGGGGCGGB AAVDBGGGGMGGGGCVGBHKAADHA Direction: Forward Position #: 4 Overlap #: 15 Alignment: AAVADDAKGADDRGBHRBHKAADHA ---BBGGGGCGGGGCGGB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Reverse Complement AAVDBGGGGMGGGGCVGBHKAADHA BBGGGGCGGGGCVD VVVGGGSGGGGSVGCVGBHKAADHA Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAVDBGGGGMGGGGCVGBHKAADHA BBGGGGCGGGGCVD----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement THDTTYHBCVGCVSCCCCSCCCVBB GCVCCGCCMCCYCC THDTTSCVCCGCCVCCCCSCCCVBB Direction: Forward Position #: 6 Overlap #: 14 Alignment: THDTTYHBCVGCVSCCCCSCCCVBB -----GCVCCGCCMCCYCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF1 Reverse Complement Original Motif VVVGGGSGGGGVGGCGGVGSAADHA CGGVGCCGCVGC VGGVGSSGSVGCGGCGGVGSAADHA Direction: Forward Position #: 1 Overlap #: 12 Alignment: VVVGGGSGGGGVGGCGGVGSAADHA CGGVGCCGCVGC------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 Combined Motif Original Motif Original Motif VGGVGSSGSVGCGGCGGVGSAADHA CGGCYBCGCG VGGVGCGGCBGCGSSGGVGSAADHA Direction: Forward Position #: 6 Overlap #: 10 Alignment: VGGVGSSGSVGCGGCGGVGSAADHA -----CGGCYBCGCG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif VGGVGCGGCBGCGSSGGVGSAADHA ATKAAWTTTTRMAABAHHTW VGGVGCGGCBGCGSSGGDKBAAWWWTTRMAABAHHTW Direction: Forward Position #: 18 Overlap #: 8 Alignment: VGGVGCGGCBGCGSSGGVGSAADHA------------ -----------------ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Original Motif Original Motif VGGVGCGGCBGCGSSGGDKBAAWWWTTRMAABAHHTW SCGCGCGG BSGCGCGGCBGCGSSGGDKBAAWWWTTRMAABAHHTW Direction: Forward Position #: 1 Overlap #: 8 Alignment: VGGVGCGGCBGCGSSGGDKBAAWWWTTRMAABAHHTW SCGCGCGG----------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 10 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 TFM11 Reverse Complement Reverse Complement WAHHTVTTYKAAAAWTTRAT TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWAHYTDTTTKWWWWTTTDWTH Direction: Forward Position #: 5 Overlap #: 20 Alignment: ----WAHHTVTTYKAAAAWTTRAT- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement TWVHWAHYTDTTTKWWWWTTTDWTH TWAAWTTVTGAAAAAHWW TWAAWWTHTKWWDWAWWWTTTDWTH Direction: Forward Position #: 1 Overlap #: 18 Alignment: TWVHWAHYTDTTTKWWWWTTTDWTH TWAAWTTVTGAAAAAHWW------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif TWAAWWTHTKWWDWAWWWTTTDWTH WTKTTTTTHWTTTTTTBT TWAAWTTTTTTTDWWTWTTTTDWTH Direction: Forward Position #: 5 Overlap #: 18 Alignment: TWAAWWTHTKWWDWAWWWTTTDWTH ----WTKTTTTTHWTTTTTTBT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Reverse Complement TWAAWTTTTTTTDWWTWTTTTDWTH WHTATTATTTDH TWATATTWTTTDHWWTWTTTTDWTH Direction: Forward Position #: 2 Overlap #: 12 Alignment: TWAAWTTTTTTTDWWTWTTTTDWTH -WHTATTATTTDH------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Reverse Complement Original Motif HAWDAAAAWAWWHDAAAWAATATWA HDAAATAATADD HAWDAAAAAATAATADAWAATATWA Direction: Forward Position #: 6 Overlap #: 12 Alignment: HAWDAAAAWAWWHDAAAWAATATWA -----HDAAATAATADD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Original Motif Original Motif HAWDAAAAAATAATADAWAATATWA DBGTAAATAHD HHDTAAAWAWWAATADAWAATATWA Direction: Forward Position #: 1 Overlap #: 11 Alignment: HAWDAAAAAATAATADAWAATATWA DBGTAAATAHD-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Original Motif TWATATTWTDTATTWWTWTTTAHHH CYYCBBCYYYTCCHCCTYYY CYYCBHHYHTTHYHYHTYHYTWTTTAHHH Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----TWATATTWTDTATTWWTWTTTAHHH CYYCBBCYYYTCCHCCTYYY--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh Combined Motif Original Motif Original Motif CYYCBHHYHTTHYHYHTYHYTWTTTAHHH DHACATTCTGH CYYCDHACATTCTKHHTYHYTWTTTAHHH Direction: Forward Position #: 5 Overlap #: 11 Alignment: CYYCBHHYHTTHYHYHTYHYTWTTTAHHH ----DHACATTCTGH-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Reverse Complement Original Motif HHDTAAAWAMHMADHYAGAATGTHDGKMG DCAGCCAATVR HHDTAAAWAMHMADHYAGAATGTHDDSAGCCAATVR Direction: Forward Position #: 26 Overlap #: 4 Alignment: HHDTAAAWAMHMADHYAGAATGTHDGKMG------- -------------------------DCAGCCAATVR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wsTACwGTAsw Original Motif Reverse Complement HHDTAAAWAMHMADHYAGAATGTHDDSAGCCAATVR DBTACWGTAVH DVTWMWRTAVHMADHYAGAATGTHDDSAGCCAATVR Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHDTAAAWAMHMADHYAGAATGTHDDSAGCCAATVR DBTACWGTAVH------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 11 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 TFM13 Reverse Complement Reverse Complement TWVHWWWYTTTYTTTTTHTTTVWBH WAHHTVTTYKAAAAWTTRAT TWHHTDTTTTWHWWTTTDWTTVWBH Direction: Forward Position #: 1 Overlap #: 20 Alignment: TWVHWWWYTTTYTTTTTHTTTVWBH WAHHTVTTYKAAAAWTTRAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Original Motif TWHHTDTTTTWHWWTTTDWTTVWBH CYYCBBCYYYTCCHCCTYYY YWBHBBYYYTTCHHHYTBHYTVWBH Direction: Forward Position #: 1 Overlap #: 20 Alignment: TWHHTDTTTTWHWWTTTDWTTVWBH CYYCBBCYYYTCCHCCTYYY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif YWBHBBYYYTTCHHHYTBHYTVWBH WTKTTTTTHWTTTTTTBT YWBHBHTBTTTYBHHTTDTTTBWBH Direction: Forward Position #: 6 Overlap #: 18 Alignment: YWBHBBYYYTTCHHHYTBHYTVWBH -----WTKTTTTTHWTTTTTTBT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif YWBHBHTBTTTYBHHTTDTTTBWBH WWHTTTTTCABAAWTTWA YWBHBWWHTTTTTCWYWAWTTHWBH Direction: Forward Position #: 6 Overlap #: 18 Alignment: YWBHBHTBTTTYBHHTTDTTTBWBH -----WWHTTTTTCABAAWTTWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Reverse Complement Original Motif HDWHAAWTWMWGAAAAAHWWVDBWK HDAAATAATADD HDWAAWAWTAWDAAAAAHWWVDBWK Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDWHAAWTWMWGAAAAAHWWVDBWK HDAAATAATADD------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tkAAATAATAtw Original Motif Original Motif HDWAAWAWTAWDAAAAAHWWVDBWK HDAAATAATAHW HDAAATAATAHDAAAAAHWWVDBWK Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDWAAWAWTAWDAAAAAHWWVDBWK HDAAATAATAHW------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Original Motif Reverse Complement HDAAATAATAHDAAAAAHWWVDBWK DHTATTTACBD HDWAWTWAYAHDAAAAAHWWVDBWK Direction: Forward Position #: 1 Overlap #: 11 Alignment: HDAAATAATAHDAAAAAHWWVDBWK DHTATTTACBD-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh Combined Motif Reverse Complement Original Motif YWBHBWWHTTTTTDHTMTWAWTWDH DHACATTCTGH YWBHDWACWTTCTKHTMTWAWTWDH Direction: Forward Position #: 5 Overlap #: 11 Alignment: YWBHBWWHTTTTTDHTMTWAWTWDH ----DHACATTCTGH---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Reverse Complement YWBHDWACWTTCTKHTMTWAWTWDH CHCCBCCKMCTCCKCM CHMCHBCDCHTYCTVMTMTWAWTWDH Direction: Forward Position #: 2 Overlap #: 15 Alignment: -YWBHDWACWTTCTKHTMTWAWTWDH CHCCBCCKMCTCCKCM---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw Combined Motif Reverse Complement Reverse Complement HDWAWTWAYARVAGMAHGDGBDGRDG DBTACWGTAVH HDWAWBTACWGTAGHAHGDGBDGRDG Direction: Forward Position #: 5 Overlap #: 11 Alignment: HDWAWTWAYARVAGMAHGDGBDGRDG ----DBTACWGTAVH----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 12 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- csGCCCCGCCCCsc cccGCCCCGCCCCsb Original Motif Original Motif HVGCCCCGCCCCBB BCCGCCCCGCCCCBB CCGCCCCGCCCCBBB Direction: Backward Position #: 1 Overlap #: 14 Alignment: -HVGCCCCGCCCCBB BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Original Motif CCGCCCCGCCCCBBB CYYCBBCYYYTCCHCCTYYY CYYCBBSCCCCSCCCCBBYY Direction: Forward Position #: 5 Overlap #: 15 Alignment: ----CCGCCCCGCCCCBBB- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Reverse Complement CYYCBBSCCCCSCCCCBBYY CHCCBCCKMCTCCKCM CHCCBSCBCCYCCYCCBBYY Direction: Forward Position #: 1 Overlap #: 16 Alignment: CYYCBBSCCCCSCCCCBBYY CHCCBCCKMCTCCKCM---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Reverse Complement CHCCBSCBCCYCCYCCBBYY GCVCCGCCMCCYCC SCVCCSCCCCBBCCCCBBYY Direction: Forward Position #: 1 Overlap #: 14 Alignment: CHCCBSCBCCYCCYCCBBYY GCVCCGCCMCCYCC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Reverse Complement Original Motif KKBVGGGGBBGGGGSGGVGS SGGTCACGTGACCS KKBVGGGGBBGGGGSGGGKSACGTGACCS Direction: Forward Position #: 16 Overlap #: 5 Alignment: KKBVGGGGBBGGGGSGGVGS--------- ---------------SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Original Motif KKBVGGGGBBGGGGSGGGKSACGTGACCS CGGVGCCGCVGC KKBVGGVGCBGSGGCGGGKSACGTGACCS Direction: Forward Position #: 4 Overlap #: 12 Alignment: KKBVGGGGBBGGGGSGGGKSACGTGACCS ---CGGVGCCGCVGC-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Reverse Complement Original Motif SGGTCACGTSRCCCGCCSCBGCVCCVBYY CGGCYBCGCG CGGYCACGYGRCCCGCCSCBGCVCCVBYY Direction: Forward Position #: 1 Overlap #: 10 Alignment: SGGTCACGTSRCCCGCCSCBGCVCCVBYY CGGCYBCGCG------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Reverse Complement Original Motif KKBVGGVGCBGSGGCGGGKCMCGTGKCCG SCGCGCGG KSGCGSGGCBGSGGCGGGKCMCGTGKCCG Direction: Forward Position #: 1 Overlap #: 8 Alignment: KKBVGGVGCBGSGGCGGGKCMCGTGKCCG SCGCGCGG--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Combined Motif Reverse Complement Reverse Complement CGGYCACGYGRCCCGCCSCBGCCSCGCSY CGCGAC CGGYCACGCGRCCCGCCSCBGCCSCGCSY Direction: Forward Position #: 7 Overlap #: 6 Alignment: CGGYCACGYGRCCCGCCSCBGCCSCGCSY ------CGCGAC----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement CGGYCACGCGRCCCGCCSCBGCCSCGCSY TWVHWWWYTTTYTTTTTHTTTVWBH CGGYCACGCGRCCCGCCSCBGCCSCKHVHWWWYTTTYTTTTTHTTTVWBH Direction: Forward Position #: 26 Overlap #: 4 Alignment: CGGYCACGCGRCCCGCCSCBGCCSCGCSY--------------------- -------------------------TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 13 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw wwAAATAATAtw Original Motif Original Motif HDAAATAATAHW HDAAATAATADD HDAAATAATAHW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATAHW HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Original Motif HDAAATAATAHW HDWVAAAHAAAAAMAAAMWWWHBWA HDWAATAAWAWAAAAMAAAMWWWHBWA Direction: Forward Position #: 3 Overlap #: 10 Alignment: HDAAATAATAHW--------------- --HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement HDWAATAAWAWAAAAMAAAMWWWHBWA ABAAAAAAWHAAAAARAW WBAAADAAWHAAAAAVAAAMWWWHBWA Direction: Forward Position #: 1 Overlap #: 18 Alignment: HDWAATAAWAWAAAAMAAAMWWWHBWA ABAAAAAAWHAAAAARAW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Reverse Complement TWVHWWWYTTTBTTTTTHWTTDTTTVW WAHHTVTTYKAAAAWTTRAT TWVHWWWYTTWYTTTWHAWTTWWWTVW Direction: Forward Position #: 6 Overlap #: 20 Alignment: TWVHWWWYTTTBTTTTTHWTTDTTTVW -----WAHHTVTTYKAAAAWTTRAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TWVHWWWYTTWYTTTWHAWTTWWWTVW WWHTTTTTCABAAWTTWA TWVHWWWHTTTTTYWHAAWTTWAWTVW Direction: Forward Position #: 6 Overlap #: 18 Alignment: TWVHWWWYTTWYTTTWHAWTTWWWTVW -----WWHTTTTTCABAAWTTWA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Reverse Complement Original Motif WBAWTWAAWTTHWKAAAAAHWWWHBWA DBGTAAATAHD HBRTAAAWATHHWKAAAAAHWWWHBWA Direction: Forward Position #: 1 Overlap #: 11 Alignment: WBAWTWAAWTTHWKAAAAAHWWWHBWA DBGTAAATAHD---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw Combined Motif Reverse Complement Original Motif TWVHWWWHTTTTTYWHHATWTTTAKVH HVTACWGTABD HHHTWMTKTABDTWVHWWWHTTTTTYW Direction: Backward Position #: 2 Overlap #: 11 Alignment: TWVHWWWHTTTTTYWHHATWTTTAKVH ---------------HVTACWGTABD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 14 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb TFM12 Original Motif Original Motif BCCGCCCCGCCCCBB CYYCBBCYYYTCCHCCTYYY CYBCVGCCCCGCCCCBBYYY Direction: Forward Position #: 3 Overlap #: 15 Alignment: --BCCGCCCCGCCCCBB--- CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement CYBCVGCCCCGCCCCBBYYY CHCCBCCKMCTCCKCM CYBCHSCYCCKCCYCCKCCY Direction: Forward Position #: 4 Overlap #: 16 Alignment: CYBCVGCCCCGCCCCBBYYY ---CHCCBCCKMCTCCKCM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Reverse Complement Reverse Complement KGGRGGMGGYGGKGSDGBMG BBGGGGCGGGGCVD KBGGGGCGGSGSBGSDGBMG Direction: Forward Position #: 1 Overlap #: 14 Alignment: KGGRGGMGGYGGKGSDGBMG BBGGGGCGGGGCVD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif KBGGGGCGGSGSBGSDGBMG GGMGGRGGCGGVGC KBGGGGMGGVGGCGGVGSMG Direction: Forward Position #: 5 Overlap #: 14 Alignment: KBGGGGCGGSGSBGSDGBMG ----GGMGGRGGCGGVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Original Motif Original Motif KBGGGGMGGVGGCGGVGSMG SGGTCACGTGACCS KBGGKSASGTGVCSSVGSMG Direction: Forward Position #: 2 Overlap #: 14 Alignment: KBGGGGMGGVGGCGGVGSMG -SGGTCACGTGACCS----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Reverse Complement KBGGKSASGTGVCSSVGSMG GCVGCGGCBCCG KBGGGCMSSKGCCCCVGSMG Direction: Forward Position #: 5 Overlap #: 12 Alignment: KBGGKSASGTGVCSSVGSMG ----GCVGCGGCBCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Reverse Complement Original Motif CYSCVGGGGCYSSYGCCCBY CGGCYBCGCG CBGCBSSGSSYSSYGCCCBY Direction: Forward Position #: 1 Overlap #: 10 Alignment: CYSCVGGGGCYSSYGCCCBY CGGCYBCGCG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Original Motif Reverse Complement CBGCBSSGSSYSSYGCCCBY CCGCGCGS CSGCGCSSSSYSSYGCCCBY Direction: Forward Position #: 1 Overlap #: 8 Alignment: CBGCBSSGSSYSSYGCCCBY CCGCGCGS------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Combined Motif Original Motif Reverse Complement CSGCGCSSSSYSSYGCCCBY CGCGAC CCGCGVSSSSYSSYGCCCBY Direction: Forward Position #: 2 Overlap #: 6 Alignment: CSGCGCSSSSYSSYGCCCBY -CGCGAC------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Reverse Complement Original Motif KBGGGCMSSKSSSSVCGCGG HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAAHAAAAAMAAAMWWWDBDRGCMSSKSSSSVCGCGG Direction: Forward Position #: 22 Overlap #: 4 Alignment: ---------------------KBGGGCMSSKSSSSVCGCGG HDWVAAAHAAAAAMAAAMWWWHBWA---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 15 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr tkAAATAATAtw Reverse Complement Reverse Complement MBATTGGCTGH WHTATTATTTDH WVTATTRKYTVH Direction: Forward Position #: 2 Overlap #: 11 Alignment: -MBATTGGCTGH WHTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Reverse Complement HVAKYMAATABW HCAGAATGTHD HCAGAAWRTMDW Direction: Forward Position #: 1 Overlap #: 11 Alignment: HVAKYMAATABW HCAGAATGTHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Reverse Complement Reverse Complement WDYAMWTTCTGH DDTATTATTTDH WDHAYATTMTKTDH Direction: Forward Position #: 3 Overlap #: 10 Alignment: WDYAMWTTCTGH-- --DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 16 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc wsTACwGTAsw Original Motif Reverse Complement BCACCTGCABC DBTACWGTAVH DBWMCTGYAVH Direction: Backward Position #: 1 Overlap #: 11 Alignment: BCACCTGCABC DBTACWGTAVH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Original Motif DVTKCAGYWBD DHACATTCTGH DHACATTCWGYWBD Direction: Forward Position #: 4 Overlap #: 8 Alignment: ---DVTKCAGYWBD DHACATTCTGH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 17 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw tkAAATAATAtw Original Motif Original Motif HDAAATAATADD HDAAATAATAHW HDAAATAATAHW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATADD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif WHTATTATTTDH WTKTTTTTHWTTTTTTBT WHTWTTWTTTDHTTTTTTBT Direction: Forward Position #: 3 Overlap #: 10 Alignment: WHTATTATTTDH-------- --WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Original Motif ABAAAAAAHDAAAWAAWAHW HDWVAAAHAAAAAMAAAMWWWHBWA WDAAAAAAADAAAHAAWAHWWHBWA Direction: Forward Position #: 1 Overlap #: 20 Alignment: ABAAAAAAHDAAAWAAWAHW----- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Reverse Complement TWVHWWHTWTTHTTTDTTTTTTTHW WAHHTVTTYKAAAAWTTRAT TWVHWWAYWTWYTTKWWWWTTTDHT Direction: Forward Position #: 6 Overlap #: 20 Alignment: TWVHWWHTWTTHTTTDTTTTTTTHW -----WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif AHDAAAWWWWRAAMWAWMTWWHBWA WWHTTTTTCABAAWTTWA WWDWWWWTYWDAAAWWWATWWHBWA Direction: Forward Position #: 1 Overlap #: 18 Alignment: AHDAAAWWWWRAAMWAWMTWWHBWA WWHTTTTTCABAAWTTWA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Reverse Complement Reverse Complement TWVHWWATWWWTTTDWKAWWWWDWW DHTATTTACBD TWVHWWWTATTTWYDWKAWWWWDWW Direction: Forward Position #: 6 Overlap #: 11 Alignment: TWVHWWATWWWTTTDWKAWWWWDWW -----DHTATTTACBD--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh Combined Motif Original Motif Original Motif TWVHWWWTATTTWYDWKAWWWWDWW DHACATTCTGH TWVHDHAYATTYTBHWKAWWWWDWW Direction: Forward Position #: 5 Overlap #: 11 Alignment: TWVHWWWTATTTWYDWKAWWWWDWW ----DHACATTCTGH---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw Combined Motif Reverse Complement Original Motif WWDWWWWTYWHVAKAATKTHDHBWA HVTACWGTABD WHHTACWKTABVAKAATKTHDHBWA Direction: Forward Position #: 2 Overlap #: 11 Alignment: WWDWWWWTYWHVAKAATKTHDHBWA -HVTACWGTABD------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Reverse Complement Reverse Complement TWVHDHAYATTYTBBTAYWGTADHW MBATTGGCTGH TWVHDHAYATTYTBBTAYWGTABATTGGCTGH Direction: Forward Position #: 22 Overlap #: 4 Alignment: TWVHDHAYATTYTBBTAYWGTADHW------- ---------------------MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif TWVHDHAYATTYTBBTAYWGTABATTGGCTGH CYYCBBCYYYTCCHCCTYYY TWVHDCHYMTTCTYBTMCHBYHBHYTGGCTGH Direction: Forward Position #: 6 Overlap #: 20 Alignment: TWVHDHAYATTYTBBTAYWGTABATTGGCTGH -----CYYCBBCYYYTCCHCCTYYY------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 18 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs csGCCCCGCCCCsc Original Motif Reverse Complement SGGTCACGTGACCS BBGGGGCGGGGCVD BSGKSRCGKGRCSV Direction: Forward Position #: 1 Overlap #: 14 Alignment: SGGTCACGTGACCS BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Original Motif Reverse Complement BSGKSRCGKGRCSV BBGGGGCGGGGCGGB BSGGGGCGGGGCSBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BSGKSRCGKGRCSV- BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Reverse Complement Reverse Complement BBSGCCCCGCCCCSB GCVCCGCCMCCYCC SCVSCSCCGCCYCCB Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBSGCCCCGCCCCSB GCVCCGCCMCCYCC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF1 Original Motif Reverse Complement SCVSCSCCGCCYCCB GCVGCGGCBCCG GCVGCGSCBCCBCCB Direction: Forward Position #: 1 Overlap #: 12 Alignment: SCVSCSCCGCCYCCB GCVGCGGCBCCG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Original Motif GCVGCGSCBCCBCCB BCACCTGCABC BCACCKGCACCBCCB Direction: Forward Position #: 1 Overlap #: 11 Alignment: GCVGCGSCBCCBCCB BCACCTGCABC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Reverse Complement Original Motif BGGBGGTGCRGGTGB CGGCYBCGCG CGGCBBYGCRGGTGB Direction: Forward Position #: 1 Overlap #: 10 Alignment: BGGBGGTGCRGGTGB CGGCYBCGCG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Reverse Complement CGGCBBYGCRGGTGB KKKAGGDGGAKKMGBBGKMG BGGHGGBGSRGGHGBBGKMG Direction: Forward Position #: 1 Overlap #: 15 Alignment: CGGCBBYGCRGGTGB----- KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Combined Motif Original Motif Original Motif BGGHGGBGSRGGHGBBGKMG GTCGCG BGGHGBCGCGGGHGBBGKMG Direction: Forward Position #: 5 Overlap #: 6 Alignment: BGGHGGBGSRGGHGBBGKMG ----GTCGCG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Original Motif BGGHGBCGCGGGHGBBGKMG RGRGGAGRRGGHGGDG BGGHGGVGSRGGDGSVGGHG Direction: Forward Position #: 5 Overlap #: 16 Alignment: BGGHGBCGCGGGHGBBGKMG ----RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Original Motif Original Motif BGGHGGVGSRGGDGSVGGHG SCGCGCGG BSGCGSGGSRGGDGSVGGHG Direction: Forward Position #: 1 Overlap #: 8 Alignment: BGGHGGVGSRGGDGSVGGHG SCGCGCGG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 19 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw kcACCTGCAgc Original Motif Reverse Complement HVTACWGTABD GBTGCAGGTGB DVTRCAGKWBH Direction: Forward Position #: 1 Overlap #: 11 Alignment: HVTACWGTABD GBTGCAGGTGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Reverse Complement DVTRCAGKWBH DDTATTATTTDH DVTAYWRTWDDH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DVTRCAGKWBH- DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Reverse Complement Original Motif HDDWAMWKTAVD HDAAATAATAHW HDDWAAATWATAHW Direction: Forward Position #: 3 Overlap #: 10 Alignment: HDDWAMWKTAVD-- --HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Reverse Complement Reverse Complement WHTATWATTTWDDH DHTATTTACBD WHTHTAWTTWHDDH Direction: Forward Position #: 3 Overlap #: 11 Alignment: WHTATWATTTWDDH --DHTATTTACBD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Reverse Complement WHTHTAWTTWHDDH TWAAWTTVTGAAAAAHWW WHTWWAWTTHWGWWAAAHWW Direction: Forward Position #: 3 Overlap #: 12 Alignment: WHTHTAWTTWHDDH------ --TWAAWTTVTGAAAAAHWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Reverse Complement WWHTTTWWCWHAAWTWWAHW WAHHTVTTYKAAAAWTTRAT WWHTTDTTYDWAAWTWWAHW Direction: Forward Position #: 1 Overlap #: 20 Alignment: WWHTTTWWCWHAAWTWWAHW WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Original Motif WHTWWAWTTWDKAADAAHWW HDWVAAAHAAAAAMAAAMWWWHBWA HHWDAAWTWWADAMAAAMWWWHBWA Direction: Forward Position #: 1 Overlap #: 20 Alignment: WHTWWAWTTWDKAADAAHWW----- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Original Motif Reverse Complement HHWDAAWTWWADAMAAAMWWWHBWA HCAGAATGTHD HYAGAATGTWDDAMAAAMWWWHBWA Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHWDAAWTWWADAMAAAMWWWHBWA HCAGAATGTHD-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif TWVHWWWYTTTYTHDWACATTCTKH WTKTTTTTHWTTTTTTBT TWVHWWWBTTTTTHWTWHWTTBTKH Direction: Forward Position #: 6 Overlap #: 18 Alignment: TWVHWWWYTTTYTHDWACATTCTKH -----WTKTTTTTHWTTTTTTBT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif TWVHWWWBTTTTTHWTWHWTTBTKH CYYCBBCYYYTCCHCCTYYY YHBHDHYHTYTYYHBYWBHTTBTKH Direction: Forward Position #: 1 Overlap #: 20 Alignment: TWVHWWWBTTTTTHWTWHWTTBTKH CYYCBBCYYYTCCHCCTYYY----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 20 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh TFM3 Reverse Complement Original Motif HCAGAATGTHD WWHTTTTTCABAAWTTWA AAWTTWAWHAKWWTKYWD Direction: Backward Position #: 8 Overlap #: 11 Alignment: HCAGAATGTHD------- WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Original Motif Original Motif AAWTTWAWHAKWWTKYWD BCACCTGCABC AAWTTWAWHAKWWTDYACCTGCABC Direction: Forward Position #: 15 Overlap #: 4 Alignment: AAWTTWAWHAKWWTKYWD------- --------------BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw Combined Motif Original Motif Original Motif AAWTTWAWHAKWWTDYACCTGCABC HDAAATAATADD AAWTTWAWWATAATAHACCTGCABC Direction: Forward Position #: 6 Overlap #: 12 Alignment: AAWTTWAWHAKWWTDYACCTGCABC -----HDAAATAATADD-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Reverse Complement GBTGCAGGTHTATTATWWTWAAWTT TWVHWWWYTTTYTTTTTHTTTVWBH GBTKHAGDWHTWTTDTTTTWWWTTTWBH Direction: Forward Position #: 4 Overlap #: 22 Alignment: GBTGCAGGTHTATTATWWTWAAWTT--- ---TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Original Motif HDWAAAWWWAAAADAAWAHWHCTDYABC ATKAAWTTTTRMAABAHHTW ATKWWWWWWWDAAAHAHAWWAHWHCTDYABC Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---HDWAAAWWWAAAADAAWAHWHCTDYABC ATKAAWTTTTRMAABAHHTW----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Original Motif ATKWWWWWWWDAAAHAHAWWAHWHCTDYABC HDAAATAATAHW ATKWWWHWWWAWAATAHWWWAHWHCTDYABC Direction: Forward Position #: 7 Overlap #: 12 Alignment: ATKWWWWWWWDAAAHAHAWWAHWHCTDYABC ------HDAAATAATAHW------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Original Motif Original Motif ATKWWWHWWWAWAATAHWWWAHWHCTDYABC DCAGCCAATVR ATKWWWHWWWAWAATAHWWWAHWHCTDCAGCCAATVR Direction: Forward Position #: 27 Overlap #: 5 Alignment: ATKWWWHWWWAWAATAHWWWAHWHCTDYABC------ --------------------------DCAGCCAATVR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement ATKWWWHWWWAWAATAHWWWAHWHCTDCAGCCAATVR ABAAAAAAWHAAAAARAW ATDAAWAAWHAWAAWAWWWWAHWHCTDCAGCCAATVR Direction: Forward Position #: 1 Overlap #: 18 Alignment: ATKWWWHWWWAWAATAHWWWAHWHCTDCAGCCAATVR ABAAAAAAWHAAAAARAW------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw Combined Motif Reverse Complement Reverse Complement MBATTGGCTGHAGDWHTWWWWTWTTWTHWTTWTTDAT DBTACWGTAVH MBATTGGCTRCWGTAVHWWWWTWTTWTHWTTWTTDAT Direction: Forward Position #: 7 Overlap #: 11 Alignment: MBATTGGCTGHAGDWHTWWWWTWTTWTHWTTWTTDAT ------DBTACWGTAVH-------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif MBATTGGCTRCWGTAVHWWWWTWTTWTHWTTWTTDAT CYYCBBCYYYTCCHCCTYYY MBATTGGCTVCDGYWHBTHYHYHTTYYHWTTWTTDAT Direction: Forward Position #: 8 Overlap #: 20 Alignment: MBATTGGCTRCWGTAVHWWWWTWTTWTHWTTWTTDAT -------CYYCBBCYYYTCCHCCTYYY---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- *************************************************************** Combined Motifs for Top Best Match Motif ID 21 and Its Best Matches ************************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww tkAAATAATAtw Original Motif Original Motif DBGTAAATAHD HDAAATAATAHW DHRWWAATAHDH Direction: Backward Position #: 1 Overlap #: 11 Alignment: -DBGTAAATAHD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Reverse Complement DHRWWAATAHDH DDTATTATTTDH DHTWWWATWTDH Direction: Forward Position #: 1 Overlap #: 12 Alignment: DHRWWAATAHDH DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement DHTWWWATWTDH TWVHWWWYTTTYTTTTTHTTTVWBH BWDWWWATWTTHTTTTTHTTTVWBH Direction: Forward Position #: 1 Overlap #: 12 Alignment: DHTWWWATWTDH------------- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif BWDWWWATWTTHTTTTTHTTTVWBH WTKTTTTTHWTTTTTTBT BWDWWWWTTTTTTDTTTDTTTBWBH Direction: Forward Position #: 6 Overlap #: 18 Alignment: BWDWWWATWTTHTTTTTHTTTVWBH -----WTKTTTTTHWTTTTTTBT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif BWDWWWWTTTTTTDTTTDTTTBWBH WWHTTTTTCABAAWTTWA BWDWWWWHTTTTTYWTWAWTTHWBH Direction: Forward Position #: 6 Overlap #: 18 Alignment: BWDWWWWTTTTTTDTTTDTTTBWBH -----WWHTTTTTCABAAWTTWA-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Original Motif HDWHAAWTWAWKAAAAAHWWWWDWV ATKAAWTTTTRMAABAHHTW WHTWAAWTWWDVAADAAHWWWWDWV Direction: Forward Position #: 1 Overlap #: 20 Alignment: HDWHAAWTWAWKAAAAAHWWWWDWV ATKAAWTTTTRMAABAHHTW----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wsTACwGTAsw Original Motif Original Motif WHTWAAWTWWDVAADAAHWWWWDWV HVTACWGTABD HHTAMWGTADDVAADAAHWWWWDWV Direction: Forward Position #: 1 Overlap #: 11 Alignment: WHTWAAWTWWDVAADAAHWWWWDWV HVTACWGTABD-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Reverse Complement Reverse Complement BWDWWWWHTTDTTBDDTACWRTADH MBATTGGCTGH BWDWWWWHTTDTTBDDTACWVTATTGGCTGH Direction: Forward Position #: 21 Overlap #: 5 Alignment: BWDWWWWHTTDTTBDDTACWRTADH------ --------------------MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Original Motif BWDWWWWHTTDTTBDDTACWVTATTGGCTGH CYYCBBCYYYTCCHCCTYYY CHBHDHHYYTBYYBBBTHYYVTATTGGCTGH Direction: Forward Position #: 1 Overlap #: 20 Alignment: BWDWWWWHTTDTTBDDTACWVTATTGGCTGH CYYCBBCYYYTCCHCCTYYY----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement CHBHDHHYYTBYYBBBTHYYVTATTGGCTGH CHCCBCCKMCTCCKCM CHBHDHCHYYBCCKVCTMCTVHATTGGCTGH Direction: Forward Position #: 7 Overlap #: 16 Alignment: CHBHDHHYYTBYYBBBTHYYVTATTGGCTGH ------CHCCBCCKMCTCCKCM--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-18-2018 12:10:47 Runtime: 594.209 seconds MOTIFSIM is written by Ngoc Tam L. Tran