**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # W-ChIPMotifs_DM230.txt 11 1 RSAT_peak-motifs_DM230.txt 10 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ************************************************************ Combined Motifs for Top Global Significant Motif ID 1 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 sSGTCACGTGACSs Original Motif Original Motif GTCGCG SGGTCACGTGACCS SGGTCRCGTGACCS Direction: Forward Position #: 3 Overlap #: 6 Alignment: --GTCGCG------ SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Reverse Complement Reverse Complement SGGTCACGKGACCS BBGGGGCGGGGCVD VSGKSRCGGGRCSB Direction: Forward Position #: 1 Overlap #: 14 Alignment: SGGTCACGKGACCS BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement VSGKSRCGGGRCSB BBGGGGCGGGGCGGB VBGGGGSSGGGSCGGB Direction: Forward Position #: 2 Overlap #: 13 Alignment: VSGKSRCGGGRCSB-- -BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Original Motif Reverse Complement VBGGGGSSGGGSCGGB GBTGCAGGTGB VBGBKGCAGGKSBGGB Direction: Forward Position #: 3 Overlap #: 11 Alignment: VBGGGGSSGGGSCGGB --GBTGCAGGTGB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 3 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 csGCCCCGCCCCsc Original Motif Original Motif CGGCYBCGCG HVGCCCCGCCCCBB CCBBCGGCCCCGCS Direction: Backward Position #: 5 Overlap #: 10 Alignment: CGGCYBCGCG---- HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif CCBBCGGCCCCGCS BCCGCCCCGCCCCBB CCBBCGSCCCSSCCCBB Direction: Forward Position #: 3 Overlap #: 12 Alignment: CCBBCGGCCCCGCS--- --BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Reverse Complement Original Motif BBGGGSSGGGSCGBBGG SGGTCACGTGACCS BSGKSRCGKGVCSVBGG Direction: Forward Position #: 1 Overlap #: 14 Alignment: BBGGGSSGGGSCGBBGG SGGTCACGTGACCS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Reverse Complement BSGKSRCGKGVCSVBGG GBTGCAGGTGB BSKGCASGTGVCSVBGG Direction: Forward Position #: 1 Overlap #: 11 Alignment: BSGKSRCGKGVCSVBGG GBTGCAGGTGB------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Reverse Complement Original Motif CCBVSGBCACSTGCRSB DCAGCCAATVR CCBVSGBCACSTGCAGCCAATVR Direction: Forward Position #: 13 Overlap #: 5 Alignment: CCBVSGBCACSTGCRSB------ ------------DCAGCCAATVR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 17 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw TFM1 Original Motif Reverse Complement HDAAATAATADD ABAAAAAAWHAAAAARAW ABAAAAAAAHAWAAWAWW Direction: Forward Position #: 7 Overlap #: 12 Alignment: ------HDAAATAATADD ABAAAAAAWHAAAAARAW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Reverse Complement Reverse Complement WWTWTTWTHTTTTTTTBT TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWWTWTTHTTTTTDTTTBWBH Direction: Forward Position #: 6 Overlap #: 18 Alignment: -----WWTWTTWTHTTTTTTTBT-- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Reverse Complement TWVHWWWTWTTHTTTTTDTTTBWBH WAHHTVTTYKAAAAWTTRAT TWHHTDTTTTWHWWWTTDWTTBWBH Direction: Forward Position #: 1 Overlap #: 20 Alignment: TWVHWWWTWTTHTTTTTDTTTBWBH WAHHTVTTYKAAAAWTTRAT----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TWHHTDTTTTWHWWWTTDWTTBWBH WWHTTTTTCABAAWTTWA WWHTTDTTYWHAAWTTWAWTTBWBH Direction: Forward Position #: 1 Overlap #: 18 Alignment: TWHHTDTTTTWHWWWTTDWTTBWBH WWHTTTTTCABAAWTTWA------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Original Motif WWHTTDTTYWHAAWTTWAWTTBWBH CYYCBBCYYYTCCHCCTYYY CYYHDBYTYYTCHHHHWYYYAWTTBWBH Direction: Forward Position #: 4 Overlap #: 17 Alignment: ---WWHTTDTTYWHAAWTTWAWTTBWBH CYYCBBCYYYTCCHCCTYYY-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 13 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw TFM11 Reverse Complement Reverse Complement WHTATTATTTDH TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWWYTTTHHTWTTWTTTVWBH Direction: Forward Position #: 12 Overlap #: 12 Alignment: -----------WHTATTATTTDH-- TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Reverse Complement Reverse Complement HDWBAAAWAAWAHHAAAMWWWHBWA ABAAAAAAWHAAAAARAW ABDAADAAAHAAAAAVAAAMWWWHBWA Direction: Forward Position #: 3 Overlap #: 16 Alignment: --HDWBAAAWAAWAHHAAAMWWWHBWA ABAAAAAAWHAAAAARAW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Reverse Complement TWVHWWWYTTTBTTTTTHTTTDTTDBT WAHHTVTTYKAAAAWTTRAT TWVHWWWYTTWTTTTWWAWTTWWWTBT Direction: Forward Position #: 6 Overlap #: 20 Alignment: TWVHWWWYTTTBTTTTTHTTTDTTDBT -----WAHHTVTTYKAAAAWTTRAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TWVHWWWYTTWTTTTWWAWTTWWWTBT WWHTTTTTCABAAWTTWA TWVHWWWHTTTTTYWHAAWTTWAWTBT Direction: Forward Position #: 6 Overlap #: 18 Alignment: TWVHWWWYTTWTTTTWWAWTTWWWTBT -----WWHTTTTTCABAAWTTWA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif TWVHWWWHTTTTTYWHAAWTTWAWTBT CYYCBBCYYYTCCHCCTYYY TWVHWYWYYDBYTYHBMMHYYWHHYBT Direction: Forward Position #: 6 Overlap #: 20 Alignment: TWVHWWWHTTTTTYWHAAWTTWAWTBT -----CYYCBBCYYYTCCHCCTYYY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 2 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 csGCCCCGCCCCsc Original Motif Reverse Complement SCGCGCGG BBGGGGCGGGGCVD GGCVDBSGSGCGGB Direction: Backward Position #: 6 Overlap #: 8 Alignment: -SCGCGCGG----- BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Reverse Complement GGCVDBSGSGCGGB BBGGGGCGGGGCGGB GGCBGGGGCGSGGCGGB Direction: Forward Position #: 3 Overlap #: 12 Alignment: GGCVDBSGSGCGGB--- --BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Reverse Complement Reverse Complement BCCGCCSCGCCCCBGCC SGGTCACGTGACCS BSSGYCMCGYSMCSSCC Direction: Forward Position #: 2 Overlap #: 14 Alignment: BCCGCCSCGCCCCBGCC -SGGTCACGTGACCS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Original Motif Reverse Complement BSSGYCMCGYSMCSSCC GBTGCAGGTGB BSSKGCASGTSHCSSCC Direction: Forward Position #: 2 Overlap #: 11 Alignment: BSSGYCMCGYSMCSSCC -GBTGCAGGTGB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Original Motif Original Motif BSSKGCASGTSHCSSCC DCAGCCAATVR BSSKGCASGTSHCMGCCAATVR Direction: Forward Position #: 12 Overlap #: 6 Alignment: BSSKGCASGTSHCSSCC----- -----------DCAGCCAATVR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 21 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww TFM11 Reverse Complement Reverse Complement DHTATTTACBD TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWWYTTTYTTTTTATTTAHBH Direction: Forward Position #: 15 Overlap #: 11 Alignment: --------------DHTATTTACBD TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Reverse Complement Reverse Complement HVDTAAATAAAAAMAAAMWWWHBWA ABAAAAAAWHAAAAARAW WBDWAAAWAHAAAMAAAAWWWHBWA Direction: Forward Position #: 1 Overlap #: 18 Alignment: HVDTAAATAAAAAMAAAMWWWHBWA ABAAAAAAWHAAAAARAW------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Reverse Complement TWVHWWWTTTTYTTTHTWTTTWDBW TWAAWTTVTGAAAAAHWW TWAAWTTHTKWHWWWHWWTTTWDBW Direction: Forward Position #: 1 Overlap #: 18 Alignment: TWVHWWWTTTTYTTTHTWTTTWDBW TWAAWTTVTGAAAAAHWW------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif WBDWAAAWWHWWWHWYAHAAWTTWA ATKAAWTTTTRMAABAHHTW WBDWWWAWWWTWWDAMAHAAHTWWA Direction: Forward Position #: 4 Overlap #: 20 Alignment: WBDWAAAWWHWWWHWYAHAAWTTWA ---ATKAAWTTTTRMAABAHHTW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Reverse Complement Original Motif TWWAHTTHTYTDWWAWWWTWWWDBW CYYCBBCYYYTCCHCCTYYY CYYHDHYYTHTCYBHHWHYYTWWWDBW Direction: Forward Position #: 3 Overlap #: 18 Alignment: --TWWAHTTHTYTDWWAWWWTWWWDBW CYYCBBCYYYTCCHCCTYYY------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Reverse Complement CYYHDHYYTHTCYBHHWHYYTWWWDBW CHCCBCCKMCTCCKCM CHCMHVCTHVTCCKVMWHYYTWWWDBW Direction: Forward Position #: 1 Overlap #: 16 Alignment: CYYHDHYYTHTCYBHHWHYYTWWWDBW CHCCBCCKMCTCCKCM----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF1 Original Motif Original Motif CHCMHVCTHVTCCKVMWHYYTWWWDBW CGGVGCCGCVGC CBSMGCCKCVKCCKVMWHYYTWWWDBW Direction: Forward Position #: 1 Overlap #: 12 Alignment: CHCMHVCTHVTCCKVMWHYYTWWWDBW CGGVGCCGCVGC--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 19 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw TFM3 Reverse Complement Original Motif DBTACWGTAVH WWHTTTTTCABAAWTTWA TTWATHTAYHRTARHWWH Direction: Backward Position #: 5 Overlap #: 11 Alignment: ---DBTACWGTAVH---- WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Original Motif TTWATHTAYHRTARHWWH ATKAAWTTTTRMAABAHHTW WTWAWWTWYWRHAAHAWHTW Direction: Forward Position #: 1 Overlap #: 18 Alignment: TTWATHTAYHRTARHWWH-- ATKAAWTTTTRMAABAHHTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Reverse Complement Original Motif WAHWTHTTHMWMWAWWTWAW HDWVAAAHAAAAAMAAAMWWWHBWA WAHWWHHTAAAHAAWWWHAAAMWWWHBWA Direction: Forward Position #: 5 Overlap #: 16 Alignment: WAHWTHTTHMWMWAWWTWAW--------- ----HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Reverse Complement WAHWWHHTAAAHAAWWWHAAAMWWWHBWA ABAAAAAAWHAAAAARAW WAHWWHWBAAAHAAWDAAAAAVWWWHBWA Direction: Forward Position #: 7 Overlap #: 18 Alignment: WAHWWHHTAAAHAAWWWHAAAMWWWHBWA ------ABAAAAAAWHAAAAARAW----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif TWVHWWWBTTTTTDWTTHTTTVWHWWHTW CYYCBBCYYYTCCHCCTYYY YHBHDBYYTYTYYHHYTBYYTVWHWWHTW Direction: Forward Position #: 1 Overlap #: 20 Alignment: TWVHWWWBTTTTTDWTTHTTTVWHWWHTW CYYCBBCYYYTCCHCCTYYY--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Reverse Complement YHBHDBYYTYTYYHHYTBYYTVWHWWHTW GCVCCGCCMCCYCC GCHCCGCCHYYTCCHHYTBYYTVWHWWHTW Direction: Forward Position #: 2 Overlap #: 13 Alignment: -YHBHDBYYTYTYYHHYTBYYTVWHWWHTW GCVCCGCCMCCYCC---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Reverse Complement GCHCCGCCHYYTCCHHYTBYYTVWHWWHTW CHCCBCCKMCTCCKCM SCMCHSCBMCTYCYHHYTBYYTVWHWWHTW Direction: Forward Position #: 1 Overlap #: 16 Alignment: GCHCCGCCHYYTCCHHYTBYYTVWHWWHTW CHCCBCCKMCTCCKCM-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 16 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc TFF11 Reverse Complement Original Motif GBTGCAGGTGB GGMGGRGGCGGVGC VGCGSTGSAGGYGG Direction: Backward Position #: 4 Overlap #: 11 Alignment: GBTGCAGGTGB--- GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement VGCGSTGSAGGYGG KKKAGGDGGAKKMGBBGKMG VGBGBHGSDGGHGKMGBBGKMG Direction: Forward Position #: 3 Overlap #: 12 Alignment: VGCGSTGSAGGYGG-------- --KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Original Motif VGBGBHGSDGGHGKMGBBGKMG RGRGGAGRRGGHGGDG RGRGGVGGDGSDGGDGKMGBBGKMG Direction: Forward Position #: 4 Overlap #: 13 Alignment: ---VGBGBHGSDGGHGKMGBBGKMG RGRGGAGRRGGHGGDG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Reverse Complement Reverse Complement CYYCBBCYYCDCCDSCDCCBCCKCM GCVGCGGCBCCG CYYCBGCHSCDSCBCCDCCBCCKCM Direction: Forward Position #: 6 Overlap #: 12 Alignment: CYYCBBCYYCDCCDSCDCCBCCKCM -----GCVGCGGCBCCG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 Combined Motif Reverse Complement Original Motif RGRGGVGGHGGVGSHGSDGCBGKMG CGGCYBCGCG RGRGGCGGCKGCGCSGSDGCBGKMG Direction: Forward Position #: 6 Overlap #: 10 Alignment: RGRGGVGGHGGVGSHGSDGCBGKMG -----CGGCYBCGCG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Combined Motif Reverse Complement Original Motif CYYCBGCHSCSGCGCYGCCGCCKCM GTCGCG CYYCBGYCGCGGCGCYGCCGCCKCM Direction: Forward Position #: 6 Overlap #: 6 Alignment: CYYCBGCHSCSGCGCYGCCGCCKCM -----GTCGCG-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Reverse Complement Original Motif RGRGGCGGCKGCGCCGCGKCBGKMG SCGCGCGG VSGSGCGGCKGCGCCGCGKCBGKMG Direction: Forward Position #: 1 Overlap #: 8 Alignment: RGRGGCGGCKGCGCCGCGKCBGKMG SCGCGCGG----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Reverse Complement Original Motif CYYCBGYCGCGGCGCYGCCGCSCSV HDWVAAAHAAAAAMAAAMWWWHBWA HDWVAAAHAAAAAMAAACHHHHGHMGCGGCGCYGCCGCSCSV Direction: Forward Position #: 18 Overlap #: 8 Alignment: -----------------CYYCBGYCGCGGCGCYGCCGCSCSV HDWVAAAHAAAAAMAAAMWWWHBWA----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 4 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 csGCCCCGCCCCsc Original Motif Original Motif CGGVGCCGCVGC HVGCCCCGCCCCBB CGGCSCCGCCSCBB Direction: Forward Position #: 1 Overlap #: 12 Alignment: CGGVGCCGCVGC-- HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Original Motif Original Motif CGGCSCCGCCSCBB BCCGCCCCGCCCCBB CGGCSSCSCCGCCCCBB Direction: Forward Position #: 3 Overlap #: 12 Alignment: CGGCSCCGCCSCBB--- --BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Reverse Complement CGGCSSCSCCGCCCCBB SGGTCACGTGACCS VGGYCACGYSRCCCCBB Direction: Forward Position #: 1 Overlap #: 14 Alignment: CGGCSSCSCCGCCCCBB SGGTCACGTGACCS--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Reverse Complement Reverse Complement BBGGGGKSMCGTGMCCV GBTGCAGGTGB BBGGSKGCASGTGHCCV Direction: Forward Position #: 4 Overlap #: 11 Alignment: BBGGGGKSMCGTGMCCV ---GBTGCAGGTGB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Original Motif Original Motif BBGGSKGCASGTGHCCV DCAGCCAATVR BBGGSKGCASGTGHCMGCCAATVR Direction: Forward Position #: 14 Overlap #: 4 Alignment: BBGGSKGCASGTGHCCV------- -------------DCAGCCAATVR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh Combined Motif Reverse Complement Original Motif MBATTGGCYGHCACSTGCRSCCBB DHACATTCTGH GHCACSTGCRSCCBBACATTSKSYMBATTGGCYGHCACS Direction: Backward Position #: 16 Overlap #: 9 Alignment: --MBATTGGCYGHCACSTGCRSCCBB ---------------DHACATTCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Reverse Complement Original Motif SGTGHCMGCCAATBRMSYSAATGTBBGGSKGCASGTGHC DBGTAAATAHD SGTGHHVGYMAATDDHSYSAATGTBBGGSKGCASGTGHC Direction: Forward Position #: 6 Overlap #: 11 Alignment: SGTGHCMGCCAATBRMSYSAATGTBBGGSKGCASGTGHC -----DBGTAAATAHD----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ************************************************************ Combined Motifs for Top Global Significant Motif ID 20 and Its Best Matches *********************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh TFM3 Reverse Complement Original Motif HCAGAATGTHD WWHTTTTTCABAAWTTWA AAWTTWAWHAKWWTKYWD Direction: Backward Position #: 8 Overlap #: 11 Alignment: HCAGAATGTHD------- WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement AAWTTWAWHAKWWTKYWD TWVHWWWYTTTYTTTTTHTTTVWBH AAWTWHAWWWKWTTBTWTTTHTTTVWBH Direction: Forward Position #: 4 Overlap #: 15 Alignment: AAWTTWAWHAKWWTKYWD---------- ---TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Reverse Complement AAWTWHAWWWKWTTBTWTTTHTTTVWBH WAHHTVTTYKAAAAWTTRAT AAWTWHWWHWTWTTYTWHWWWTTTVTBH Direction: Forward Position #: 7 Overlap #: 20 Alignment: AAWTWHAWWWKWTTBTWTTTHTTTVWBH ------WAHHTVTTYKAAAAWTTRAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Reverse Complement HDABAAAWWWHWAMAAWAWHWWHWAWTT ABAAAAAAWHAAAAARAW HADDAAAAAWHWAAAADAWHWWHWAWTT Direction: Forward Position #: 2 Overlap #: 18 Alignment: HDABAAAWWWHWAMAAWAWHWWHWAWTT -ABAAAAAAWHAAAAARAW--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif AAWTWHWWHWTDTTTTWHWTTTTTDDTH CYYCBBCYYYTCCHCCTYYY AAWTWHCHHHBBYTYYTCYTYYTTHHTH Direction: Forward Position #: 7 Overlap #: 20 Alignment: AAWTWHWWHWTDTTTTWHWTTTTTDDTH ------CYYCBBCYYYTCCHCCTYYY-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Reverse Complement AAWTWHCHHHBBYTYYTCYTYYTTHHTH GCVGCGGCBCCG AAWTWGCHBCDGCYCCDCYTYYTTHHTH Direction: Forward Position #: 6 Overlap #: 12 Alignment: AAWTWHCHHHBBYTYYTCYTYYTTHHTH -----GCVGCGGCBCCG----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Combined Motif Original Motif Original Motif AAWTWGCHBCDGCYCCDCYTYYTTHHTH GTCGCG AAWTWGYCGCGGCYCCDCYTYYTTHHTH Direction: Forward Position #: 6 Overlap #: 6 Alignment: AAWTWGCHBCDGCYCCDCYTYYTTHHTH -----GTCGCG----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Reverse Complement AAWTWGYCGCGGCYCCDCYTYYTTHHTH GCVCCGCCMCCYCC RMHYYGCCVCSBCCCCDCYTYYTTHHTH Direction: Forward Position #: 1 Overlap #: 14 Alignment: AAWTWGYCGCGGCYCCDCYTYYTTHHTH GCVCCGCCMCCYCC-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-18-2018 12:10:47 Runtime: 594.209 seconds MOTIFSIM is written by Ngoc Tam L. 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