**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # W-ChIPMotifs_DM230.txt 11 1 RSAT_peak-motifs_DM230.txt 10 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 1 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 TFW3 Original Motif Original Motif GTCGCG CGGCYBCGCG GBCGCGCGGC Direction: Backward Position #: 1 Overlap #: 6 Alignment: ----GTCGCG CGGCYBCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sSGTCACGTGACSs Original Motif Reverse Complement GBCGCGCGGC SGGTCACGTGACCS SGGTCRCGYGRCCS Direction: Forward Position #: 3 Overlap #: 10 Alignment: --GBCGCGCGGC-- SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF11 Original Motif Original Motif SGGTCRCGYGRCCS GGMGGRGGCGGVGC GGVBSRSGCGGCSS Direction: Forward Position #: 1 Overlap #: 14 Alignment: SGGTCRCGYGRCCS GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFF1 Original Motif Original Motif GGVBSRSGCGGCSS CGGVGCCGCVGC SGGVGVCGCGGCSS Direction: Forward Position #: 1 Overlap #: 12 Alignment: GGVBSRSGCGGCSS CGGVGCCGCVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Original Motif Original Motif SGGVGVCGCGGCSS SCGCGCGG SSGCGCSGCGGCSS Direction: Forward Position #: 1 Overlap #: 8 Alignment: SGGVGVCGCGGCSS SCGCGCGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Original Motif Reverse Complement SSGCGCSGCGGCSS BBGGGGCGGGGCVD BSGSGSCGSGGCSB Direction: Forward Position #: 1 Overlap #: 14 Alignment: SSGCGCSGCGGCSS BBGGGGCGGGGCVD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif cccGCCCCGCCCCsb Reverse Complement Original Motif BSGCCSCGSCSCSB BCCGCCCCGCCCCBB BBCGCCCCGCCCCSB Direction: Forward Position #: 2 Overlap #: 14 Alignment: -BSGCCSCGSCSCSB BCCGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Original Motif BSGGGGCGGGGCGBB RGRGGAGRRGGHGGDG BSGGRGSRGGGSGVGGDG Direction: Forward Position #: 3 Overlap #: 13 Alignment: BSGGGGCGGGGCGBB--- --RGRGGAGRRGGHGGDG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif CHCCVCSCCCMSCMCCSB CYYCBBCYYYTCCHCCTYYY CHCCHCCVCCMBCHCCBBCTYYY Direction: Forward Position #: 4 Overlap #: 15 Alignment: CHCCVCSCCCMSCMCCSB----- ---CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Original Motif CHCCHCCVCCMBCHCCBBCTYYY BCACCTGCABC BCACCTGCABCMBCHCCBBCTYYY Direction: Forward Position #: 2 Overlap #: 10 Alignment: -CHCCHCCVCCMBCHCCBBCTYYY BCACCTGCABC------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh Combined Motif Original Motif Original Motif BCACCTGCABCMBCHCCBBCTYYY DHACATTCTGH BCACCTGCABCMBCHCCBBCDHACATTCTGH Direction: Forward Position #: 21 Overlap #: 4 Alignment: BCACCTGCABCMBCHCCBBCTYYY------- --------------------DHACATTCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 16 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc wsTACwGTAsw Original Motif Reverse Complement BCACCTGCABC DBTACWGTAVH DBWMCTGYAVH Direction: Backward Position #: 1 Overlap #: 11 Alignment: BCACCTGCABC DBTACWGTAVH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Original Motif DVTKCAGYWBD DHACATTCTGH DHACATTCTKCAGYWBD Direction: Forward Position #: 7 Overlap #: 5 Alignment: ------DVTKCAGYWBD DHACATTCTGH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 2 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW2 csGCCCCGCCCCsc Reverse Complement Original Motif CCGCGCGS HVGCCCCGCCCCBB BCCGCSCSBHVGCC Direction: Backward Position #: 2 Overlap #: 8 Alignment: -----CCGCGCGS- HVGCCCCGCCCCBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Reverse Complement GGCVDBSGSGCGGB BBGGGGCGGGGCGGB GGCBGGGGCGSGGCGGB Direction: Forward Position #: 3 Overlap #: 12 Alignment: GGCVDBSGSGCGGB--- --BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Reverse Complement Reverse Complement BCCGCCSCGCCCCBGCC GCVCCGCCMCCYCC BCCGCCCCGCCCCSBCC Direction: Forward Position #: 4 Overlap #: 14 Alignment: BCCGCCSCGCCCCBGCC ---GCVCCGCCMCCYCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Reverse Complement BCCGCCCCGCCCCSBCC GCVGCGGCBCCG BCCGCCSCGSCBCCBCC Direction: Forward Position #: 4 Overlap #: 12 Alignment: BCCGCCCCGCCCCSBCC ---GCVGCGGCBCCG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Reverse Complement Reverse Complement GGBGGBGSCGSGGCGGB CGCGBMGCCG SGCGGVGCCGSGGCGGB Direction: Forward Position #: 1 Overlap #: 10 Alignment: GGBGGBGSCGSGGCGGB CGCGBMGCCG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM2 Original Motif Original Motif SGCGGVGCCGSGGCGGB RGRGGAGRRGGHGGDG GGVGGRGSVGSVGSGGB Direction: Forward Position #: 1 Overlap #: 16 Alignment: SGCGGVGCCGSGGCGGB RGRGGAGRRGGHGGDG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif BCCSCVSCVSCKCCVCC CYYCBBCYYYTCCHCCTYYY BCCCCBCCVCCYCYCCHCCTYYY Direction: Forward Position #: 4 Overlap #: 14 Alignment: BCCSCVSCVSCKCCVCC------ ---CYYCBBCYYYTCCHCCTYYY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Reverse Complement Original Motif KKKAGGDGGKGMGGVGGBGGGGB SGGTCACGTGACCS KKKAGGDGGKGMGGVGGBBGGKCACGTGACCS Direction: Forward Position #: 19 Overlap #: 5 Alignment: KKKAGGDGGKGMGGVGGBGGGGB--------- ------------------SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW1 Combined Motif Reverse Complement Original Motif SGGTCACGTGRCCBBCCVCCYCYCCHCCTYYY GTCGCG SGGTCACGTSGCSBBCCVCCYCYCCHCCTYYY Direction: Forward Position #: 8 Overlap #: 6 Alignment: SGGTCACGTGRCCBBCCVCCYCYCCHCCTYYY -------GTCGCG------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Original Motif Reverse Complement SGGTCACGTSGCSBBCCVCCYCYCCHCCTYYY GBTGCAGGTGB SSKKCASGTSVCSBBCCVCCYCYCCHCCTYYY Direction: Forward Position #: 1 Overlap #: 11 Alignment: SGGTCACGTSGCSBBCCVCCYCYCCHCCTYYY GBTGCAGGTGB--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 3 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFW3 TFF1 Original Motif Original Motif CGGCYBCGCG CGGVGCCGCVGC GCCGGCKCCGCG Direction: Backward Position #: 3 Overlap #: 10 Alignment: CGGCYBCGCG-- CGGVGCCGCVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif GCCGGCKCCGCG GGMGGRGGCGGVGC GCSGGSGVSGCGGVGC Direction: Forward Position #: 3 Overlap #: 10 Alignment: GCCGGCKCCGCG---- --GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif csGCCCCGCCCCsc Reverse Complement Original Motif GCVCCGCSVCSCCSGC HVGCCCCGCCCCBB SCGCCSCGCCCCCBGC Direction: Forward Position #: 1 Overlap #: 14 Alignment: GCVCCGCSVCSCCSGC HVGCCCCGCCCCBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- cccGCCCCGCCCCsb Combined Motif Reverse Complement Reverse Complement GCBGGGGGCGSGGCGS BBGGGGCGGGGCGGB GCBBBGGGSSGGGSSSGB Direction: Forward Position #: 4 Overlap #: 13 Alignment: GCBGGGGGCGSGGCGS-- ---BBGGGGCGGGGCGGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Reverse Complement GCBBBGGGSSGGGSSSGB KKKAGGDGGAKKMGBBGKMG GBBDGGGGGVGGVGSVGBMG Direction: Forward Position #: 1 Overlap #: 18 Alignment: GCBBBGGGSSGGGSSSGB-- KKKAGGDGGAKKMGBBGKMG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Reverse Complement Reverse Complement CYBCVSCVCCVCCCCCDBBC CHCCBCCKMCTCCKCM CYBCHSCBCCBCCYCCKCVC Direction: Forward Position #: 4 Overlap #: 16 Alignment: CYBCVSCVCCVCCCCCDBBC ---CHCCBCCKMCTCCKCM- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sSGTCACGTGACSs Combined Motif Original Motif Original Motif CYBCHSCBCCBCCYCCKCVC SGGTCACGTGACCS CYBCHSCBCCBCCBSSTCACGTGACCS Direction: Forward Position #: 14 Overlap #: 7 Alignment: CYBCHSCBCCBCCYCCKCVC------- -------------SGGTCACGTGACCS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW2 Original Motif Reverse Complement CYBCHSCBCCBCCBSSTCACGTGACCS CCGCGCGS CCGCGCSBCCBCCBSSTCACGTGACCS Direction: Forward Position #: 1 Overlap #: 8 Alignment: CYBCHSCBCCBCCBSSTCACGTGACCS CCGCGCGS------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif kcACCTGCAgc Reverse Complement Reverse Complement SGGTCACGTGASSBGGBGGBSGCGCGG GBTGCAGGTGB SSKKCASGTGDSSBGGBGGBSGCGCGG Direction: Forward Position #: 1 Overlap #: 11 Alignment: SGGTCACGTGASSBGGBGGBSGCGCGG GBTGCAGGTGB---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Original Motif Original Motif SSKKCASGTGDSSBGGBGGBSGCGCGG DCAGCCAATVR SSKKCASGTGDSSBGGBGGBSGCGCRGCCAATVR Direction: Forward Position #: 24 Overlap #: 4 Alignment: SSKKCASGTGDSSBGGBGGBSGCGCGG------- -----------------------DCAGCCAATVR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 19 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw kcACCTGCAgc Original Motif Reverse Complement HVTACWGTABD GBTGCAGGTGB DVTRCAGKWBH Direction: Forward Position #: 1 Overlap #: 11 Alignment: HVTACWGTABD GBTGCAGGTGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Reverse Complement DVTRCAGKWBH DDTATTATTTDH DVTAYWRTWDDH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DVTRCAGKWBH- DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tkAAATAATAtw Original Motif Reverse Complement DVTAYWRTWDDH WHTATTATTTDH DHTATTATTTDH Direction: Forward Position #: 1 Overlap #: 12 Alignment: DVTAYWRTWDDH WHTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Original Motif Reverse Complement DHTATTATTTDH DHTATTTACBD DHTATTWWYDDH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHTATTATTTDH DHTATTTACBD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif DHTATTWWYDDH WWHTTTTTCABAAWTTWA DHTATTWWTTHWBAAWTTWA Direction: Forward Position #: 3 Overlap #: 10 Alignment: DHTATTWWYDDH-------- --WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Reverse Complement TWAAWTTVWDAAWWAATAHD WAHHTVTTYKAAAAWTTRAT TAWHTDTHTKAAAWWWTAHW Direction: Forward Position #: 1 Overlap #: 20 Alignment: TWAAWTTVWDAAWWAATAHD WAHHTVTTYKAAAAWTTRAT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Original Motif TAWHTDTHTKAAAWWWTAHW HDWVAAAHAAAAAMAAAMWWWHBWA TAWHTDWBAAAHAAAWWAAAAMWWWHBWA Direction: Forward Position #: 5 Overlap #: 16 Alignment: TAWHTDTHTKAAAWWWTAHW--------- ----HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh Combined Motif Reverse Complement Original Motif TWVHWWWYTTTTWWTTTHTTTVWDAHWTA DHACATTCTGH TWVHWWWYTTTTWWTTTHTTTVWDDHAYATTCTGH Direction: Forward Position #: 25 Overlap #: 5 Alignment: TWVHWWWYTTTTWWTTTHTTTVWDAHWTA------ ------------------------DHACATTCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif TWVHWWWYTTTTWWTTTHTTTVWDDHAYATTCTGH WTKTTTTTHWTTTTTTBT TWBWTTTTHTTTWTTTTTTTTVWDDHAYATTCTGH Direction: Forward Position #: 1 Overlap #: 18 Alignment: TWVHWWWYTTTTWWTTTHTTTVWDDHAYATTCTGH WTKTTTTTHWTTTTTTBT----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Original Motif Original Motif TWBWTTTTHTTTWTTTTTTTTVWDDHAYATTCTGH CYYCBBCYYYTCCHCCTYYY TWBWTTTCHHYBBYTTYTYYHBHHHYHYATTCTGH Direction: Forward Position #: 8 Overlap #: 20 Alignment: TWBWTTTTHTTTWTTTTTTTTVWDDHAYATTCTGH -------CYYCBBCYYYTCCHCCTYYY-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 20 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh TFM3 Reverse Complement Original Motif HCAGAATGTHD WWHTTTTTCABAAWTTWA AAWTTWAWHAKWWTKYWD Direction: Backward Position #: 8 Overlap #: 11 Alignment: HCAGAATGTHD------- WWHTTTTTCABAAWTTWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Original Motif Original Motif AAWTTWAWHAKWWTKYWD BCACCTGCABC AAWTTWAWHAKWWTDYACCTGCABC Direction: Forward Position #: 15 Overlap #: 4 Alignment: AAWTTWAWHAKWWTKYWD------- --------------BCACCTGCABC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Original Motif AAWTTWAWHAKWWTDYACCTGCABC HDAAATAATADD AAAWWTAATAKWWTDYACCTGCABC Direction: Forward Position #: 1 Overlap #: 12 Alignment: AAWTTWAWHAKWWTDYACCTGCABC HDAAATAATADD------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement AAAWWTAATAKWWTDYACCTGCABC TWVHWWWYTTTYTTTTTHTTTVWBH HWDWWWAHTWTHTTDTWBYTKCABH Direction: Forward Position #: 1 Overlap #: 25 Alignment: AAAWWTAATAKWWTDYACCTGCABC TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Original Motif Reverse Complement HWDWWWAHTWTHTTDTWBYTKCABH WAHHTVTTYKAAAAWTTRAT WAHHTDHTTKAHWWTWTDHTWBYTKCABH Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----HWDWWWAHTWTHTTDTWBYTKCABH WAHHTVTTYKAAAAWTTRAT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw Combined Motif Original Motif Reverse Complement WAHHTDHTTKAHWWTWTDHTWBYTKCABH WHTATTATTTDH WAHHTWHTATWAWTTDWDHTWBYTKCABH Direction: Forward Position #: 6 Overlap #: 12 Alignment: WAHHTDHTTKAHWWTWTDHTWBYTKCABH -----WHTATTATTTDH------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Original Motif Original Motif WAHHTWHTATWAWTTDWDHTWBYTKCABH DCAGCCAATVR WAHHTWHTATWAWTTDWDHTWBYTKCAGCCAATVR Direction: Forward Position #: 25 Overlap #: 5 Alignment: WAHHTWHTATWAWTTDWDHTWBYTKCABH------ ------------------------DCAGCCAATVR ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif WAHHTWHTATWAWTTDWDHTWBYTKCAGCCAATVR WTKTTTTTHWTTTTTTBT WWHTTTDTHTTWWTTTHWHTWBYTKCAGCCAATVR Direction: Forward Position #: 1 Overlap #: 18 Alignment: WAHHTWHTATWAWTTDWDHTWBYTKCAGCCAATVR WTKTTTTTHWTTTTTTBT----------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw Combined Motif Reverse Complement Reverse Complement MBATTGGCTGYAKBWAHWHAAAWWAAHADAAAHWW DBTACWGTAVH MBATTGDCTRCAGTAVHWHAAAWWAAHADAAAHWW Direction: Forward Position #: 7 Overlap #: 11 Alignment: MBATTGGCTGYAKBWAHWHAAAWWAAHADAAAHWW ------DBTACWGTAVH------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Reverse Complement WWHTTTDTHTTWWTTTHWHBTACTGKAGHCAATBR KKKAGGDGGAKKMGBBGKMG WWHTTKKKHKBDKKDKKHDBHRBWGKAGHCAATBR Direction: Forward Position #: 6 Overlap #: 20 Alignment: WWHTTTDTHTTWWTTTHWHBTACTGKAGHCAATBR -----KKKAGGDGGAKKMGBBGKMG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 21 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww tkAAATAATAtw Original Motif Original Motif DBGTAAATAHD HDAAATAATAHW DHRWWAATAHDH Direction: Backward Position #: 1 Overlap #: 11 Alignment: -DBGTAAATAHD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Reverse Complement DHRWWAATAHDH DDTATTATTTDH DHTWWWATWTDH Direction: Forward Position #: 1 Overlap #: 12 Alignment: DHRWWAATAHDH DDTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Reverse Complement DHTWWWATWTDH TWVHWWWYTTTYTTTTTHTTTVWBH DHTWDWATWTWTTYTTTTTHTTTVWBH Direction: Forward Position #: 3 Overlap #: 10 Alignment: DHTWWWATWTDH--------------- --TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Original Motif Original Motif DHTWDWATWTWTTYTTTTTHTTTVWBH WTKTTTTTHWTTTTTTBT DHTWDWWTWTTTTHTTTTTTTTTVWBH Direction: Forward Position #: 6 Overlap #: 18 Alignment: DHTWDWATWTWTTYTTTTTHTTTVWBH -----WTKTTTTTHWTTTTTTBT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif DHTWDWWTWTTTTHTTTTTTTTTVWBH WWHTTTTTCABAAWTTWA DHTWDWWDTTTTTCWTWWWTTTWVWBH Direction: Forward Position #: 6 Overlap #: 18 Alignment: DHTWDWWTWTTTTHTTTTTTTTTVWBH -----WWHTTTTTCABAAWTTWA---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM13 Reverse Complement Reverse Complement HDWVWAAAWWWAWGAAAAADWWDWAHD WAHHTVTTYKAAAAWTTRAT WAHHTVWBTDAAAWWWWDAWAAADWWDWAHD Direction: Forward Position #: 5 Overlap #: 16 Alignment: ----HDWVWAAAWWWAWGAAAAADWWDWAHD WAHHTVTTYKAAAAWTTRAT----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw Combined Motif Reverse Complement Reverse Complement DHTWDWWDTTTWTHWWWWTTTDAVWBAHHTW DBTACWGTAVH TWTBTACWGTAVHDHTWDWWDTTTWTHWWWW Direction: Backward Position #: 3 Overlap #: 11 Alignment: DHTWDWWDTTTWTHWWWWTTTDAVWBAHHTW ------------------DBTACWGTAVH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Original Motif Reverse Complement TWTBTACWGTAVHDHTWDWWDTTTWTHWWWW MBATTGGCTGH TWTBTACWGTAVHDHTWDWWDTTTWTMHATTGGCTGH Direction: Forward Position #: 27 Overlap #: 5 Alignment: TWTBTACWGTAVHDHTWDWWDTTTWTHWWWW------ --------------------------MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM12 Original Motif Original Motif TWTBTACWGTAVHDHTWDWWDTTTWTMHATTGGCTGH CYYCBBCYYYTCCHCCTYYY CTHHBTMYHBTMHHBHTHHHWDTTTWTMHATTGGCTGH Direction: Forward Position #: 2 Overlap #: 19 Alignment: -TWTBTACWGTAVHDHTWDWWDTTTWTMHATTGGCTGH CYYCBBCYYYTCCHCCTYYY------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement CTHHBTMYHBTMHHBHTHHHWDTTTWTMHATTGGCTGH CHCCBCCKMCTCCKCM CYHCCBCCBVBHCCBCHHHHWDTTTWTMHATTGGCTGH Direction: Forward Position #: 2 Overlap #: 16 Alignment: CTHHBTMYHBTMHHBHTHHHWDTTTWTMHATTGGCTGH -CHCCBCCKMCTCCKCM--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 17 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwAAATAATAtw tkAAATAATAtw Original Motif Original Motif HDAAATAATADD HDAAATAATAHW HDAAATAATAHW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATADD HDAAATAATAHW ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM1 Combined Motif Reverse Complement Original Motif WHTATTATTTDH WTKTTTTTHWTTTTTTBT WHTWTTWTTTDHTTTTTTBT Direction: Forward Position #: 3 Overlap #: 10 Alignment: WHTATTATTTDH-------- --WTKTTTTTHWTTTTTTBT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Reverse Complement WHTWTTWTTTDHTTTTTTBT TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWHTWTTHTTTDTTTTTDTBW Direction: Forward Position #: 6 Overlap #: 20 Alignment: -----WHTWTTWTTTDHTTTTTTBT TWVHWWWYTTTYTTTTTHTTTVWBH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Original Motif Reverse Complement TWVHWWHTWTTHTTTDTTTTTDTBW WAHHTVTTYKAAAAWTTRAT TWVWWHHTWTTYTWWAWTTTTHTBW Direction: Forward Position #: 4 Overlap #: 20 Alignment: TWVHWWHTWTTHTTTDTTTTTDTBW ---WAHHTVTTYKAAAAWTTRAT-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Original Motif Original Motif TWVWWHHTWTTYTWWAWTTTTHTBW WWHTTTTTCABAAWTTWA TWVWWWHTWTTTYWHAAWTTWATBW Direction: Forward Position #: 5 Overlap #: 18 Alignment: TWVWWHHTWTTYTWWAWTTTTHTBW ----WWHTTTTTCABAAWTTWA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wbgTAAATAww Reverse Complement Original Motif WVATWAAWTTHWKAAAWAHWWWBWA DBGTAAATAHD HVRTAAATWTHWKAAAWAHWWWBWA Direction: Forward Position #: 1 Overlap #: 11 Alignment: WVATWAAWTTHWKAAAWAHWWWBWA DBGTAAATAHD-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dhACATTCTkh Combined Motif Reverse Complement Original Motif TWVWWWHTWTTTYWHAWATTTAKBH DHACATTCTGH TWDWACATTYTKHWHAWATTTAKBH Direction: Forward Position #: 3 Overlap #: 11 Alignment: TWVWWWHTWTTTYWHAWATTTAKBH --DHACATTCTGH------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw Combined Motif Original Motif Original Motif TWDWACATTYTKHWHAWATTTAKBH HVTACWGTABD TDVTACWKTMTDHWHAWATTTAKBH Direction: Forward Position #: 2 Overlap #: 11 Alignment: TWDWACATTYTKHWHAWATTTAKBH -HVTACWGTABD------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 13 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tkAAATAATAtw wwAAATAATAtw Original Motif Original Motif HDAAATAATAHW HDAAATAATADD HDAAATAATAHW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATAHW HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM11 Combined Motif Original Motif Original Motif HDAAATAATAHW HDWVAAAHAAAAAMAAAMWWWHBWA HDAAAWAAWAWDAMAAAMWWWHBWA Direction: Forward Position #: 1 Overlap #: 12 Alignment: HDAAATAATAHW------------- HDWVAAAHAAAAAMAAAMWWWHBWA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM1 Reverse Complement Original Motif TWVHWWWYTTTYTDWTWTTWTTTDH WTKTTTTTHWTTTTTTBT WTKWHTTTHTTTTTTTHTWTTWTTTDH Direction: Forward Position #: 3 Overlap #: 16 Alignment: --TWVHWWWYTTTYTDWTWTTWTTTDH WTKTTTTTHWTTTTTTBT--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM13 Combined Motif Reverse Complement Original Motif HDAAAWAAWAHAAAAAAAHAAAHWRAW ATKAAWTTTTRMAABAHHTW WTWAAWWWTWDAAADAAMTWAAHWRAW Direction: Forward Position #: 1 Overlap #: 20 Alignment: HDAAAWAAWAHAAAAAAAHAAAHWRAW ATKAAWTTTTRMAABAHHTW------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM3 Combined Motif Reverse Complement Original Motif WTKWHTTWAYTTDTTTDWAWWWTTWAW WWHTTTTTCABAAWTTWA WWDTTTTTMWHWAWTTDAAWWWTTWAW Direction: Forward Position #: 1 Overlap #: 18 Alignment: WTKWHTTWAYTTDTTTDWAWWWTTWAW WWHTTTTTCABAAWTTWA--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Original Motif Reverse Complement WWDTTTTTMWHWAWTTDAAWWWTTWAW DHTATTTACBD WWDTTTDTATTTAHBWDAAWWWTTWAW Direction: Forward Position #: 6 Overlap #: 11 Alignment: WWDTTTTTMWHWAWTTDAAWWWTTWAW -----DHTATTTACBD----------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wsTACwGTAsw Combined Motif Reverse Complement Original Motif WTWAAWWWTTDWVDTAAATADAAADWW HVTACWGTABD WHDTAMWKTADDVDTAAATADAAADWW Direction: Forward Position #: 2 Overlap #: 11 Alignment: WTWAAWWWTTDWVDTAAATADAAADWW -HVTACWGTABD--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Original Motif Reverse Complement WHDTAMWKTADDVDTAAATADAAADWW HCAGAATGTHD HYAKAATGTWDDVDTAAATADAAADWW Direction: Forward Position #: 1 Overlap #: 11 Alignment: WHDTAMWKTADDVDTAAATADAAADWW HCAGAATGTHD---------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr Combined Motif Original Motif Reverse Complement HYAKAATGTWDDVDTAAATADAAADWW MBATTGGCTGH HYAKAATGTWDDVDTAAATADAAAHATTGGCTGH Direction: Forward Position #: 24 Overlap #: 4 Alignment: HYAKAATGTWDDVDTAAATADAAADWW------- -----------------------MBATTGGCTGH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM12 Combined Motif Reverse Complement Original Motif DCAGCCAATHTTTDTATTTAHBDHWACATTYTKH CYYCBBCYYYTCCHCCTYYY DCAGCCMHTBYYYBTMYYBHHBHYWACATTYTKH Direction: Forward Position #: 5 Overlap #: 20 Alignment: DCAGCCAATHTTTDTATTTAHBDHWACATTYTKH ----CYYCBBCYYYTCCHCCTYYY---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 15 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kCAGCCAATmr tkAAATAATAtw Reverse Complement Reverse Complement MBATTGGCTGH WHTATTATTTDH WVTATTRKYTVH Direction: Forward Position #: 2 Overlap #: 11 Alignment: -MBATTGGCTGH WHTATTATTTDH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dhACATTCTkh Reverse Complement Reverse Complement HVAKYMAATABW HCAGAATGTHD HCAGAAWRTMDW Direction: Forward Position #: 1 Overlap #: 11 Alignment: HVAKYMAATABW HCAGAATGTHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwAAATAATAtw Original Motif Original Motif HCAGAAWRTMDW HDAAATAATADD HHARAWAATADW Direction: Forward Position #: 1 Overlap #: 12 Alignment: HCAGAAWRTMDW HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- kcACCTGCAgc Combined Motif Reverse Complement Reverse Complement WDTATTWTMTDH GBTGCAGGTGB WDTATTWDHTGCAGGTGB Direction: Forward Position #: 8 Overlap #: 5 Alignment: WDTATTWTMTDH------ -------GBTGCAGGTGB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF11 Combined Motif Original Motif Original Motif WDTATTWDHTGCAGGTGB GGMGGRGGCGGVGC WDTATTWDHTGCAGGTGGRGGCGGVGC Direction: Forward Position #: 14 Overlap #: 5 Alignment: WDTATTWDHTGCAGGTGB--------- -------------GGMGGRGGCGGVGC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFM11 Original Motif Reverse Complement WDTATTWDHTGCAGGTGGRGGCGGVGC TWVHWWWYTTTYTTTTTHTTTVWBH TWVHWWHTWTTHTHTKYAKKTVDDGGCGGVGC Direction: Forward Position #: 6 Overlap #: 20 Alignment: -----WDTATTWDHTGCAGGTGGRGGCGGVGC TWVHWWWYTTTYTTTTTHTTTVWBH------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wbgTAAATAww Combined Motif Reverse Complement Original Motif GCVCCGCCHDVARYTMRAHAHAAWAHWWHBWA DBGTAAATAHD GCVCCGCHHDTAAHTADAHAHAAWAHWWHBWA Direction: Forward Position #: 8 Overlap #: 11 Alignment: GCVCCGCCHDVARYTMRAHAHAAWAHWWHBWA -------DBGTAAATAHD-------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif TFW3 Original Motif Reverse Complement GCVCCGCHHDTAAHTADAHAHAAWAHWWHBWA CGCGBMGCCG CGCGCCGCCGDTAAHTADAHAHAAWAHWWHBWA Direction: Forward Position #: 2 Overlap #: 9 Alignment: -GCVCCGCHHDTAAHTADAHAHAAWAHWWHBWA CGCGBMGCCG----------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFM2 Combined Motif Original Motif Reverse Complement CGCGCCGCCGDTAAHTADAHAHAAWAHWWHBWA CHCCBCCKMCTCCKCM CGCGCCVCCBSCDMMTMVDMMHAAWAHWWHBWA Direction: Forward Position #: 6 Overlap #: 16 Alignment: CGCGCCGCCGDTAAHTADAHAHAAWAHWWHBWA -----CHCCBCCKMCTCCKCM------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TFF1 Combined Motif Original Motif Reverse Complement CGCGCCVCCBSCDMMTMVDMMHAAWAHWWHBWA GCVGCGGCBCCG CGCGCCGCSGCYHCVTMVDMMHAAWAHWWHBWA Direction: Forward Position #: 4 Overlap #: 12 Alignment: CGCGCCVCCBSCDMMTMVDMMHAAWAHWWHBWA ---GCVGCGGCBCCG------------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-18-2018 12:10:47 Runtime: 594.209 seconds MOTIFSIM is written by Ngoc Tam L. 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