**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 2 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # W-ChIPMotifs_DM230.txt 11 1 RSAT_peak-motifs_DM230.txt 10 2 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ********************************************************************** Best Matches in Database for Each Motif (Highest to Lowest) ***************************************************************** Dataset #: 1 Motif ID: 1 Motif name: TFW1 Original motif 0.000000 0.082495 0.917505 0.000000 0.074447 0.217304 0.197183 0.511066 0.000000 0.897384 0.102616 0.000000 0.050302 0.102616 0.847082 0.000000 0.000000 0.949698 0.050302 0.000000 0.000000 0.052314 0.947686 0.000000 Consensus sequence: GTCGCG Reserve complement motif 0.000000 0.947686 0.052314 0.000000 0.000000 0.050302 0.949698 0.000000 0.050302 0.847082 0.102616 0.000000 0.000000 0.102616 0.897384 0.000000 0.511066 0.217304 0.197183 0.074447 0.000000 0.917505 0.082495 0.000000 Consensus sequence: CGCGAC ************************************************************************ Best Matches for Motif ID 1 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_secondary Original Motif Original Motif Backward 9 6 0.000000 Species: Mus musculus Original motif 0.142646 0.070072 0.573757 0.213525 0.142215 0.493588 0.067040 0.297157 0.024280 0.923170 0.017567 0.034984 0.015569 0.033118 0.937202 0.014111 0.039447 0.888724 0.020074 0.051755 0.016404 0.008157 0.963367 0.012073 0.063620 0.860169 0.044753 0.031458 0.787911 0.122939 0.024389 0.064761 0.260517 0.103413 0.509585 0.126484 0.203752 0.216621 0.251506 0.328121 0.081075 0.040917 0.820854 0.057154 0.096434 0.760303 0.054942 0.088321 0.266016 0.190184 0.384583 0.159217 0.223960 0.243225 0.228688 0.304127 Consensus sequence: GYCGCGCARBGCVB Reverse complement motif 0.304127 0.243225 0.228688 0.223960 0.266016 0.384583 0.190184 0.159217 0.096434 0.054942 0.760303 0.088321 0.081075 0.820854 0.040917 0.057154 0.328121 0.216621 0.251506 0.203752 0.260517 0.509585 0.103413 0.126484 0.064761 0.122939 0.024389 0.787911 0.063620 0.044753 0.860169 0.031458 0.016404 0.963367 0.008157 0.012073 0.039447 0.020074 0.888724 0.051755 0.015569 0.937202 0.033118 0.014111 0.024280 0.017567 0.923170 0.034984 0.142215 0.067040 0.493588 0.297157 0.142646 0.573757 0.070072 0.213525 Consensus sequence: VVGCVMTGCGCGKC Alignment: GYCGCGCARBGCVB GTCGCG-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00060 Max_secondary Original Motif Reverse Complement Forward 3 6 0.008755 Species: Mus musculus Original motif 0.127991 0.202889 0.399822 0.269298 0.156940 0.244015 0.182364 0.416681 0.046494 0.050598 0.744311 0.158596 0.196142 0.365183 0.183389 0.255286 0.019306 0.946805 0.015210 0.018680 0.924839 0.022113 0.027620 0.025428 0.007478 0.672138 0.027789 0.292595 0.046702 0.026044 0.906146 0.021107 0.117335 0.610863 0.025132 0.246670 0.044431 0.053581 0.722748 0.179240 0.543713 0.149809 0.190030 0.116447 0.241148 0.722386 0.022547 0.013919 0.265412 0.113032 0.270602 0.350954 0.226186 0.143504 0.332746 0.297564 Consensus sequence: BBGHCACGCGACDD Reverse complement motif 0.226186 0.332746 0.143504 0.297564 0.350954 0.113032 0.270602 0.265412 0.241148 0.022547 0.722386 0.013919 0.116447 0.149809 0.190030 0.543713 0.044431 0.722748 0.053581 0.179240 0.117335 0.025132 0.610863 0.246670 0.046702 0.906146 0.026044 0.021107 0.007478 0.027789 0.672138 0.292595 0.025428 0.022113 0.027620 0.924839 0.019306 0.015210 0.946805 0.018680 0.196142 0.183389 0.365183 0.255286 0.046494 0.744311 0.050598 0.158596 0.416681 0.244015 0.182364 0.156940 0.127991 0.399822 0.202889 0.269298 Consensus sequence: HDGTCGCGTGDCVB Alignment: HDGTCGCGTGDCVB --GTCGCG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Reverse Complement Reverse Complement Backward 6 6 0.010295 Species: Mus musculus Original motif 0.358868 0.212371 0.263565 0.165196 0.303014 0.253580 0.111217 0.332189 0.420933 0.110957 0.210958 0.257152 0.769724 0.062662 0.032155 0.135459 0.311973 0.051319 0.408669 0.228039 0.097916 0.141153 0.719697 0.041234 0.009980 0.014044 0.971955 0.004021 0.014425 0.974798 0.008373 0.002404 0.000891 0.013228 0.983966 0.001915 0.000827 0.938560 0.059548 0.001065 0.007071 0.102005 0.872378 0.018546 0.020099 0.897653 0.014151 0.068097 0.114080 0.346724 0.409037 0.130159 0.331439 0.279041 0.085030 0.304491 0.319846 0.136792 0.043641 0.499722 Consensus sequence: VHDADGGCGCGCSHW Reverse complement motif 0.499722 0.136792 0.043641 0.319846 0.304491 0.279041 0.085030 0.331439 0.114080 0.409037 0.346724 0.130159 0.020099 0.014151 0.897653 0.068097 0.007071 0.872378 0.102005 0.018546 0.000827 0.059548 0.938560 0.001065 0.000891 0.983966 0.013228 0.001915 0.014425 0.008373 0.974798 0.002404 0.009980 0.971955 0.014044 0.004021 0.097916 0.719697 0.141153 0.041234 0.311973 0.408669 0.051319 0.228039 0.135459 0.062662 0.032155 0.769724 0.257152 0.110957 0.210958 0.420933 0.332189 0.253580 0.111217 0.303014 0.165196 0.212371 0.263565 0.358868 Consensus sequence: WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB ----CGCGAC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Original Motif Backward 7 6 0.011961 Species: Mus musculus Original motif 0.456612 0.057181 0.078281 0.407926 0.460529 0.185506 0.083106 0.270859 0.445717 0.179510 0.239355 0.135417 0.116339 0.145186 0.275331 0.463144 0.239398 0.142078 0.480004 0.138520 0.355157 0.217877 0.284296 0.142670 0.318602 0.444835 0.153321 0.083243 0.609569 0.055866 0.280349 0.054216 0.062297 0.769824 0.027844 0.140035 0.151868 0.019245 0.803188 0.025699 0.011842 0.952534 0.017959 0.017665 0.017665 0.017959 0.952534 0.011842 0.025699 0.803188 0.019245 0.151868 0.140035 0.027844 0.769824 0.062297 0.054216 0.280349 0.055866 0.609569 0.013084 0.624655 0.177956 0.184305 0.287647 0.183527 0.295753 0.233074 0.042309 0.345931 0.198458 0.413301 0.338138 0.266033 0.045367 0.350462 0.302850 0.155320 0.074662 0.467168 0.240926 0.068901 0.283055 0.407118 0.409954 0.183157 0.154186 0.252704 Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Reverse complement motif 0.252704 0.183157 0.154186 0.409954 0.407118 0.068901 0.283055 0.240926 0.467168 0.155320 0.074662 0.302850 0.350462 0.266033 0.045367 0.338138 0.413301 0.345931 0.198458 0.042309 0.287647 0.295753 0.183527 0.233074 0.013084 0.177956 0.624655 0.184305 0.609569 0.280349 0.055866 0.054216 0.140035 0.769824 0.027844 0.062297 0.025699 0.019245 0.803188 0.151868 0.017665 0.952534 0.017959 0.011842 0.011842 0.017959 0.952534 0.017665 0.151868 0.803188 0.019245 0.025699 0.062297 0.027844 0.769824 0.140035 0.054216 0.055866 0.280349 0.609569 0.318602 0.153321 0.444835 0.083243 0.142670 0.217877 0.284296 0.355157 0.239398 0.480004 0.142078 0.138520 0.463144 0.145186 0.275331 0.116339 0.135417 0.179510 0.239355 0.445717 0.270859 0.185506 0.083106 0.460529 0.407926 0.057181 0.078281 0.456612 Consensus sequence: HDWHMHGACGCGCGTRBVVBHW Alignment: WHVBVVMACGCGCGTCDYHWDH ----------CGCGAC------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_secondary Original Motif Original Motif Backward 10 6 0.014366 Species: Mus musculus Original motif 0.298336 0.418632 0.208054 0.074978 0.289907 0.015608 0.457100 0.237385 0.273583 0.077889 0.107860 0.540668 0.184954 0.161611 0.384390 0.269045 0.521826 0.156340 0.089019 0.232815 0.356716 0.131104 0.394857 0.117323 0.266669 0.108765 0.505273 0.119293 0.020778 0.047199 0.919524 0.012500 0.948536 0.018775 0.008113 0.024576 0.010822 0.964042 0.014701 0.010434 0.007428 0.019505 0.966351 0.006717 0.010025 0.975678 0.008648 0.005649 0.043796 0.120935 0.742979 0.092289 0.008252 0.250704 0.541132 0.199913 0.474428 0.044681 0.134430 0.346461 0.146597 0.421317 0.143166 0.288920 0.020540 0.181479 0.553811 0.244170 0.129612 0.173360 0.535219 0.161808 0.506084 0.158156 0.130983 0.204776 0.054872 0.103043 0.545792 0.296293 0.389882 0.171037 0.164162 0.274918 0.225861 0.314031 0.288872 0.171237 Consensus sequence: VDWDARRGACGCGGWHGGAKHV Reverse complement motif 0.225861 0.288872 0.314031 0.171237 0.274918 0.171037 0.164162 0.389882 0.054872 0.545792 0.103043 0.296293 0.204776 0.158156 0.130983 0.506084 0.129612 0.535219 0.173360 0.161808 0.020540 0.553811 0.181479 0.244170 0.146597 0.143166 0.421317 0.288920 0.346461 0.044681 0.134430 0.474428 0.008252 0.541132 0.250704 0.199913 0.043796 0.742979 0.120935 0.092289 0.010025 0.008648 0.975678 0.005649 0.007428 0.966351 0.019505 0.006717 0.010822 0.014701 0.964042 0.010434 0.024576 0.018775 0.008113 0.948536 0.020778 0.919524 0.047199 0.012500 0.266669 0.505273 0.108765 0.119293 0.356716 0.394857 0.131104 0.117323 0.232815 0.156340 0.089019 0.521826 0.184954 0.384390 0.161611 0.269045 0.540668 0.077889 0.107860 0.273583 0.289907 0.457100 0.015608 0.237385 0.298336 0.208054 0.418632 0.074978 Consensus sequence: VHYTCCDWCCGCGTCMMTHWHV Alignment: VDWDARRGACGCGGWHGGAKHV -------GTCGCG--------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Reverse Complement Reverse Complement Forward 10 6 0.014399 Species: Mus musculus Original motif 0.142624 0.111294 0.283688 0.462394 0.221170 0.081404 0.499138 0.198288 0.290070 0.042114 0.604904 0.062912 0.109755 0.559510 0.215454 0.115281 0.111745 0.022727 0.850580 0.014948 0.015907 0.942291 0.005561 0.036241 0.088509 0.003729 0.902805 0.004957 0.004957 0.902805 0.003729 0.088509 0.036241 0.005561 0.942291 0.015907 0.014948 0.850580 0.022727 0.111745 0.325358 0.049424 0.519652 0.105566 0.062912 0.604904 0.042114 0.290070 0.214335 0.388248 0.125912 0.271505 0.128984 0.372787 0.092390 0.405839 0.269058 0.098422 0.484016 0.148504 0.362176 0.156050 0.188642 0.293132 Consensus sequence: DDGCGCGCGCRCHYRD Reverse complement motif 0.293132 0.156050 0.188642 0.362176 0.269058 0.484016 0.098422 0.148504 0.405839 0.372787 0.092390 0.128984 0.214335 0.125912 0.388248 0.271505 0.062912 0.042114 0.604904 0.290070 0.325358 0.519652 0.049424 0.105566 0.014948 0.022727 0.850580 0.111745 0.036241 0.942291 0.005561 0.015907 0.004957 0.003729 0.902805 0.088509 0.088509 0.902805 0.003729 0.004957 0.015907 0.005561 0.942291 0.036241 0.111745 0.850580 0.022727 0.014948 0.109755 0.215454 0.559510 0.115281 0.290070 0.604904 0.042114 0.062912 0.221170 0.499138 0.081404 0.198288 0.462394 0.111294 0.283688 0.142624 Consensus sequence: DMMDGMGCGCGCGCHD Alignment: DMMDGMGCGCGCGCHD ---------CGCGAC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_primary Reverse Complement Reverse Complement Forward 5 6 0.014724 Species: Mus musculus Original motif 0.305970 0.214348 0.269312 0.210370 0.279551 0.218276 0.140576 0.361597 0.391304 0.162239 0.193916 0.252541 0.701667 0.102206 0.041580 0.154547 0.427655 0.068368 0.324706 0.179271 0.144368 0.191048 0.609772 0.054812 0.014295 0.020613 0.958397 0.006695 0.019783 0.962982 0.013403 0.003831 0.001189 0.023882 0.973231 0.001697 0.001343 0.919840 0.077728 0.001089 0.011293 0.097945 0.865194 0.025568 0.039106 0.864604 0.025189 0.071100 0.147663 0.328105 0.407118 0.117115 0.462769 0.203531 0.107986 0.225714 0.293396 0.229650 0.082819 0.394135 Consensus sequence: VHDARGGCGCGCVHH Reverse complement motif 0.394135 0.229650 0.082819 0.293396 0.225714 0.203531 0.107986 0.462769 0.147663 0.407118 0.328105 0.117115 0.039106 0.025189 0.864604 0.071100 0.011293 0.865194 0.097945 0.025568 0.001343 0.077728 0.919840 0.001089 0.001189 0.973231 0.023882 0.001697 0.019783 0.013403 0.962982 0.003831 0.014295 0.958397 0.020613 0.006695 0.144368 0.609772 0.191048 0.054812 0.179271 0.068368 0.324706 0.427655 0.154547 0.102206 0.041580 0.701667 0.252541 0.162239 0.193916 0.391304 0.361597 0.218276 0.140576 0.279551 0.210370 0.214348 0.269312 0.305970 Consensus sequence: HHVGCGCGCCKTDHB Alignment: HHVGCGCGCCKTDHB ----CGCGAC----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Original Motif Reverse Complement Backward 7 6 0.022257 Species: Mus musculus Original motif 0.146334 0.312326 0.244281 0.297060 0.493155 0.092609 0.162506 0.251729 0.503593 0.059863 0.077561 0.358984 0.763321 0.015264 0.213114 0.008301 0.012415 0.025932 0.945502 0.016151 0.006713 0.015221 0.950098 0.027968 0.062415 0.834303 0.054500 0.048782 0.011010 0.020677 0.928821 0.039493 0.012785 0.024162 0.145822 0.817231 0.133595 0.033962 0.787876 0.044567 0.140697 0.180481 0.428253 0.250570 0.036281 0.806412 0.033510 0.123797 0.157910 0.408607 0.122427 0.311055 0.292185 0.260017 0.197515 0.250283 0.251107 0.124480 0.359447 0.264967 Consensus sequence: BDWAGGCGTGBCHHD Reverse complement motif 0.251107 0.359447 0.124480 0.264967 0.250283 0.260017 0.197515 0.292185 0.157910 0.122427 0.408607 0.311055 0.036281 0.033510 0.806412 0.123797 0.140697 0.428253 0.180481 0.250570 0.133595 0.787876 0.033962 0.044567 0.817231 0.024162 0.145822 0.012785 0.011010 0.928821 0.020677 0.039493 0.062415 0.054500 0.834303 0.048782 0.006713 0.950098 0.015221 0.027968 0.012415 0.945502 0.025932 0.016151 0.008301 0.015264 0.213114 0.763321 0.358984 0.059863 0.077561 0.503593 0.251729 0.092609 0.162506 0.493155 0.146334 0.244281 0.312326 0.297060 Consensus sequence: HHDGBCACGCCTWDB Alignment: HHDGBCACGCCTWDB ---GTCGCG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00049 Sp100_secondary Original Motif Original Motif Backward 7 6 0.030080 Species: Mus musculus Original motif 0.121527 0.301307 0.180155 0.397012 0.139498 0.362713 0.312252 0.185537 0.117583 0.681448 0.066954 0.134015 0.047669 0.030086 0.903231 0.019014 0.170226 0.102196 0.072756 0.654821 0.028698 0.940593 0.017675 0.013033 0.029643 0.030315 0.911277 0.028764 0.217032 0.360573 0.201883 0.220512 0.122291 0.216246 0.274159 0.387305 0.163480 0.120996 0.185701 0.529823 0.662319 0.064113 0.038511 0.235057 0.608197 0.108227 0.106516 0.177059 0.420639 0.144577 0.085478 0.349306 0.332026 0.206552 0.217711 0.243711 0.155857 0.264946 0.317960 0.261237 Consensus sequence: BBCGTCGHBTAAWDB Reverse complement motif 0.155857 0.317960 0.264946 0.261237 0.243711 0.206552 0.217711 0.332026 0.349306 0.144577 0.085478 0.420639 0.177059 0.108227 0.106516 0.608197 0.235057 0.064113 0.038511 0.662319 0.529823 0.120996 0.185701 0.163480 0.387305 0.216246 0.274159 0.122291 0.217032 0.201883 0.360573 0.220512 0.029643 0.911277 0.030315 0.028764 0.028698 0.017675 0.940593 0.013033 0.654821 0.102196 0.072756 0.170226 0.047669 0.903231 0.030086 0.019014 0.117583 0.066954 0.681448 0.134015 0.139498 0.312252 0.362713 0.185537 0.397012 0.301307 0.180155 0.121527 Consensus sequence: BDWTTAVDCGACGBV Alignment: BBCGTCGHBTAAWDB ---GTCGCG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Reverse Complement Forward 5 6 0.031799 Species: Mus musculus Original motif 0.150668 0.131779 0.245665 0.471887 0.316817 0.287314 0.150829 0.245040 0.256473 0.409066 0.109700 0.224761 0.210646 0.220222 0.345010 0.224122 0.166679 0.508939 0.081676 0.242705 0.049351 0.759380 0.088489 0.102780 0.047598 0.785546 0.121957 0.044898 0.004606 0.944933 0.034696 0.015764 0.040252 0.050652 0.890382 0.018713 0.003038 0.913699 0.022449 0.060814 0.028672 0.941477 0.012276 0.017575 0.635243 0.139731 0.110495 0.114531 0.240016 0.385948 0.182848 0.191188 0.210430 0.274127 0.085171 0.430272 0.088118 0.454598 0.208989 0.248295 0.181269 0.265028 0.149023 0.404680 0.101070 0.252682 0.368542 0.277706 Consensus sequence: DHHBCCCCGCCAHHBHB Reverse complement motif 0.101070 0.368542 0.252682 0.277706 0.404680 0.265028 0.149023 0.181269 0.088118 0.208989 0.454598 0.248295 0.430272 0.274127 0.085171 0.210430 0.240016 0.182848 0.385948 0.191188 0.114531 0.139731 0.110495 0.635243 0.028672 0.012276 0.941477 0.017575 0.003038 0.022449 0.913699 0.060814 0.040252 0.890382 0.050652 0.018713 0.004606 0.034696 0.944933 0.015764 0.047598 0.121957 0.785546 0.044898 0.049351 0.088489 0.759380 0.102780 0.166679 0.081676 0.508939 0.242705 0.210646 0.345010 0.220222 0.224122 0.256473 0.109700 0.409066 0.224761 0.245040 0.287314 0.150829 0.316817 0.471887 0.131779 0.245665 0.150668 Consensus sequence: BHBHDTGGCGGGGBDHD Alignment: BHBHDTGGCGGGGBDHD ----GTCGCG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 2 Motif name: TFW2 Original motif 0.005831 0.364431 0.416910 0.212828 0.081633 0.816327 0.099125 0.002915 0.002915 0.067055 0.921283 0.008746 0.005831 0.883382 0.107872 0.002915 0.000000 0.096210 0.860058 0.043732 0.002915 0.906706 0.078717 0.011662 0.043732 0.075802 0.825073 0.055394 0.000000 0.125364 0.871720 0.002915 Consensus sequence: SCGCGCGG Reserve complement motif 0.000000 0.871720 0.125364 0.002915 0.043732 0.825073 0.075802 0.055394 0.002915 0.078717 0.906706 0.011662 0.000000 0.860058 0.096210 0.043732 0.005831 0.107872 0.883382 0.002915 0.002915 0.921283 0.067055 0.008746 0.081633 0.099125 0.816327 0.002915 0.005831 0.416910 0.364431 0.212828 Consensus sequence: CCGCGCGS ************************************************************************ Best Matches for Motif ID 2 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Reverse Complement Backward 8 8 0.000000 Species: Mus musculus Original motif 0.456612 0.057181 0.078281 0.407926 0.460529 0.185506 0.083106 0.270859 0.445717 0.179510 0.239355 0.135417 0.116339 0.145186 0.275331 0.463144 0.239398 0.142078 0.480004 0.138520 0.355157 0.217877 0.284296 0.142670 0.318602 0.444835 0.153321 0.083243 0.609569 0.055866 0.280349 0.054216 0.062297 0.769824 0.027844 0.140035 0.151868 0.019245 0.803188 0.025699 0.011842 0.952534 0.017959 0.017665 0.017665 0.017959 0.952534 0.011842 0.025699 0.803188 0.019245 0.151868 0.140035 0.027844 0.769824 0.062297 0.054216 0.280349 0.055866 0.609569 0.013084 0.624655 0.177956 0.184305 0.287647 0.183527 0.295753 0.233074 0.042309 0.345931 0.198458 0.413301 0.338138 0.266033 0.045367 0.350462 0.302850 0.155320 0.074662 0.467168 0.240926 0.068901 0.283055 0.407118 0.409954 0.183157 0.154186 0.252704 Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Reverse complement motif 0.252704 0.183157 0.154186 0.409954 0.407118 0.068901 0.283055 0.240926 0.467168 0.155320 0.074662 0.302850 0.350462 0.266033 0.045367 0.338138 0.413301 0.345931 0.198458 0.042309 0.287647 0.295753 0.183527 0.233074 0.013084 0.177956 0.624655 0.184305 0.609569 0.280349 0.055866 0.054216 0.140035 0.769824 0.027844 0.062297 0.025699 0.019245 0.803188 0.151868 0.017665 0.952534 0.017959 0.011842 0.011842 0.017959 0.952534 0.017665 0.151868 0.803188 0.019245 0.025699 0.062297 0.027844 0.769824 0.140035 0.054216 0.055866 0.280349 0.609569 0.318602 0.153321 0.444835 0.083243 0.142670 0.217877 0.284296 0.355157 0.239398 0.480004 0.142078 0.138520 0.463144 0.145186 0.275331 0.116339 0.135417 0.179510 0.239355 0.445717 0.270859 0.185506 0.083106 0.460529 0.407926 0.057181 0.078281 0.456612 Consensus sequence: HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW -------CCGCGCGS------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_secondary Reverse Complement Reverse Complement Backward 2 8 0.002284 Species: Mus musculus Original motif 0.142646 0.070072 0.573757 0.213525 0.142215 0.493588 0.067040 0.297157 0.024280 0.923170 0.017567 0.034984 0.015569 0.033118 0.937202 0.014111 0.039447 0.888724 0.020074 0.051755 0.016404 0.008157 0.963367 0.012073 0.063620 0.860169 0.044753 0.031458 0.787911 0.122939 0.024389 0.064761 0.260517 0.103413 0.509585 0.126484 0.203752 0.216621 0.251506 0.328121 0.081075 0.040917 0.820854 0.057154 0.096434 0.760303 0.054942 0.088321 0.266016 0.190184 0.384583 0.159217 0.223960 0.243225 0.228688 0.304127 Consensus sequence: GYCGCGCARBGCVB Reverse complement motif 0.304127 0.243225 0.228688 0.223960 0.266016 0.384583 0.190184 0.159217 0.096434 0.054942 0.760303 0.088321 0.081075 0.820854 0.040917 0.057154 0.328121 0.216621 0.251506 0.203752 0.260517 0.509585 0.103413 0.126484 0.064761 0.122939 0.024389 0.787911 0.063620 0.044753 0.860169 0.031458 0.016404 0.963367 0.008157 0.012073 0.039447 0.020074 0.888724 0.051755 0.015569 0.937202 0.033118 0.014111 0.024280 0.017567 0.923170 0.034984 0.142215 0.067040 0.493588 0.297157 0.142646 0.573757 0.070072 0.213525 Consensus sequence: VVGCVMTGCGCGKC Alignment: VVGCVMTGCGCGKC -----CCGCGCGS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_primary Reverse Complement Reverse Complement Backward 7 8 0.003379 Species: Mus musculus Original motif 0.358868 0.212371 0.263565 0.165196 0.303014 0.253580 0.111217 0.332189 0.420933 0.110957 0.210958 0.257152 0.769724 0.062662 0.032155 0.135459 0.311973 0.051319 0.408669 0.228039 0.097916 0.141153 0.719697 0.041234 0.009980 0.014044 0.971955 0.004021 0.014425 0.974798 0.008373 0.002404 0.000891 0.013228 0.983966 0.001915 0.000827 0.938560 0.059548 0.001065 0.007071 0.102005 0.872378 0.018546 0.020099 0.897653 0.014151 0.068097 0.114080 0.346724 0.409037 0.130159 0.331439 0.279041 0.085030 0.304491 0.319846 0.136792 0.043641 0.499722 Consensus sequence: VHDADGGCGCGCSHW Reverse complement motif 0.499722 0.136792 0.043641 0.319846 0.304491 0.279041 0.085030 0.331439 0.114080 0.409037 0.346724 0.130159 0.020099 0.014151 0.897653 0.068097 0.007071 0.872378 0.102005 0.018546 0.000827 0.059548 0.938560 0.001065 0.000891 0.983966 0.013228 0.001915 0.014425 0.008373 0.974798 0.002404 0.009980 0.971955 0.014044 0.004021 0.097916 0.719697 0.141153 0.041234 0.311973 0.408669 0.051319 0.228039 0.135459 0.062662 0.032155 0.769724 0.257152 0.110957 0.210958 0.420933 0.332189 0.253580 0.111217 0.303014 0.165196 0.212371 0.263565 0.358868 Consensus sequence: WHSGCGCGCCHTDHB Alignment: WHSGCGCGCCHTDHB -CCGCGCGS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_primary Reverse Complement Reverse Complement Backward 7 8 0.003999 Species: Mus musculus Original motif 0.305970 0.214348 0.269312 0.210370 0.279551 0.218276 0.140576 0.361597 0.391304 0.162239 0.193916 0.252541 0.701667 0.102206 0.041580 0.154547 0.427655 0.068368 0.324706 0.179271 0.144368 0.191048 0.609772 0.054812 0.014295 0.020613 0.958397 0.006695 0.019783 0.962982 0.013403 0.003831 0.001189 0.023882 0.973231 0.001697 0.001343 0.919840 0.077728 0.001089 0.011293 0.097945 0.865194 0.025568 0.039106 0.864604 0.025189 0.071100 0.147663 0.328105 0.407118 0.117115 0.462769 0.203531 0.107986 0.225714 0.293396 0.229650 0.082819 0.394135 Consensus sequence: VHDARGGCGCGCVHH Reverse complement motif 0.394135 0.229650 0.082819 0.293396 0.225714 0.203531 0.107986 0.462769 0.147663 0.407118 0.328105 0.117115 0.039106 0.025189 0.864604 0.071100 0.011293 0.865194 0.097945 0.025568 0.001343 0.077728 0.919840 0.001089 0.001189 0.973231 0.023882 0.001697 0.019783 0.013403 0.962982 0.003831 0.014295 0.958397 0.020613 0.006695 0.144368 0.609772 0.191048 0.054812 0.179271 0.068368 0.324706 0.427655 0.154547 0.102206 0.041580 0.701667 0.252541 0.162239 0.193916 0.391304 0.361597 0.218276 0.140576 0.279551 0.210370 0.214348 0.269312 0.305970 Consensus sequence: HHVGCGCGCCKTDHB Alignment: HHVGCGCGCCKTDHB -CCGCGCGS------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Reverse Complement Original Motif Backward 5 8 0.004845 Species: Mus musculus Original motif 0.142624 0.111294 0.283688 0.462394 0.221170 0.081404 0.499138 0.198288 0.290070 0.042114 0.604904 0.062912 0.109755 0.559510 0.215454 0.115281 0.111745 0.022727 0.850580 0.014948 0.015907 0.942291 0.005561 0.036241 0.088509 0.003729 0.902805 0.004957 0.004957 0.902805 0.003729 0.088509 0.036241 0.005561 0.942291 0.015907 0.014948 0.850580 0.022727 0.111745 0.325358 0.049424 0.519652 0.105566 0.062912 0.604904 0.042114 0.290070 0.214335 0.388248 0.125912 0.271505 0.128984 0.372787 0.092390 0.405839 0.269058 0.098422 0.484016 0.148504 0.362176 0.156050 0.188642 0.293132 Consensus sequence: DDGCGCGCGCRCHYRD Reverse complement motif 0.293132 0.156050 0.188642 0.362176 0.269058 0.484016 0.098422 0.148504 0.405839 0.372787 0.092390 0.128984 0.214335 0.125912 0.388248 0.271505 0.062912 0.042114 0.604904 0.290070 0.325358 0.519652 0.049424 0.105566 0.014948 0.022727 0.850580 0.111745 0.036241 0.942291 0.005561 0.015907 0.004957 0.003729 0.902805 0.088509 0.088509 0.902805 0.003729 0.004957 0.015907 0.005561 0.942291 0.036241 0.111745 0.850580 0.022727 0.014948 0.109755 0.215454 0.559510 0.115281 0.290070 0.604904 0.042114 0.062912 0.221170 0.499138 0.081404 0.198288 0.462394 0.111294 0.283688 0.142624 Consensus sequence: DMMDGMGCGCGCGCHD Alignment: DDGCGCGCGCRCHYRD ----CCGCGCGS---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_secondary Original Motif Original Motif Backward 7 8 0.014958 Species: Mus musculus Original motif 0.477863 0.106306 0.184102 0.231729 0.304951 0.149020 0.361418 0.184612 0.548996 0.056128 0.348902 0.045974 0.385727 0.477782 0.086218 0.050273 0.409556 0.232265 0.173851 0.184328 0.174550 0.312880 0.307123 0.205448 0.850398 0.047204 0.041665 0.060734 0.141234 0.548534 0.142230 0.168002 0.059462 0.026354 0.892948 0.021236 0.053714 0.870297 0.028935 0.047055 0.086273 0.069147 0.805284 0.039296 0.033781 0.573881 0.034115 0.358223 0.035191 0.079663 0.824970 0.060176 0.051830 0.862631 0.019359 0.066180 0.178685 0.015738 0.762485 0.043092 0.058988 0.042615 0.017608 0.880789 0.202382 0.173360 0.284095 0.340163 0.098493 0.234651 0.506524 0.160333 0.109087 0.336204 0.250510 0.304198 0.130945 0.250843 0.177122 0.441090 0.353830 0.138838 0.162784 0.344548 0.114290 0.417163 0.160662 0.307885 Consensus sequence: DDRMHBACGCGYGCGTDGBBDB Reverse complement motif 0.114290 0.160662 0.417163 0.307885 0.344548 0.138838 0.162784 0.353830 0.441090 0.250843 0.177122 0.130945 0.109087 0.250510 0.336204 0.304198 0.098493 0.506524 0.234651 0.160333 0.340163 0.173360 0.284095 0.202382 0.880789 0.042615 0.017608 0.058988 0.178685 0.762485 0.015738 0.043092 0.051830 0.019359 0.862631 0.066180 0.035191 0.824970 0.079663 0.060176 0.033781 0.034115 0.573881 0.358223 0.086273 0.805284 0.069147 0.039296 0.053714 0.028935 0.870297 0.047055 0.059462 0.892948 0.026354 0.021236 0.141234 0.142230 0.548534 0.168002 0.060734 0.047204 0.041665 0.850398 0.174550 0.307123 0.312880 0.205448 0.184328 0.232265 0.173851 0.409556 0.385727 0.086218 0.477782 0.050273 0.045974 0.056128 0.348902 0.548996 0.304951 0.361418 0.149020 0.184612 0.231729 0.106306 0.184102 0.477863 Consensus sequence: BDVBCDACGCKCGCGTBHRKHD Alignment: DDRMHBACGCGYGCGTDGBBDB --------SCGCGCGG------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Original Motif Reverse Complement Forward 6 8 0.019448 Species: Mus musculus Original motif 0.104824 0.412716 0.254506 0.227955 0.644922 0.065476 0.140479 0.149122 0.201205 0.166164 0.347131 0.285501 0.360606 0.256316 0.150766 0.232313 0.199831 0.240681 0.279350 0.280137 0.234308 0.204076 0.321306 0.240310 0.274112 0.462435 0.111425 0.152028 0.067070 0.717501 0.073934 0.141496 0.106745 0.084442 0.658566 0.150247 0.025128 0.967053 0.003585 0.004234 0.006412 0.982989 0.003227 0.007371 0.009588 0.877620 0.002571 0.110221 0.621521 0.355443 0.015669 0.007366 0.002600 0.980275 0.004191 0.012934 0.118773 0.026658 0.783843 0.070725 0.022358 0.822101 0.024684 0.130857 0.713212 0.080912 0.128793 0.077084 0.166568 0.250955 0.107934 0.474544 0.225040 0.222494 0.163301 0.389166 0.268976 0.223206 0.265314 0.242504 0.137052 0.229058 0.148439 0.485451 0.135819 0.304550 0.141994 0.417637 0.272440 0.319501 0.230580 0.177478 Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Reverse complement motif 0.272440 0.230580 0.319501 0.177478 0.417637 0.304550 0.141994 0.135819 0.485451 0.229058 0.148439 0.137052 0.242504 0.223206 0.265314 0.268976 0.389166 0.222494 0.163301 0.225040 0.474544 0.250955 0.107934 0.166568 0.077084 0.080912 0.128793 0.713212 0.022358 0.024684 0.822101 0.130857 0.118773 0.783843 0.026658 0.070725 0.002600 0.004191 0.980275 0.012934 0.007366 0.355443 0.015669 0.621521 0.009588 0.002571 0.877620 0.110221 0.006412 0.003227 0.982989 0.007371 0.025128 0.003585 0.967053 0.004234 0.106745 0.658566 0.084442 0.150247 0.067070 0.073934 0.717501 0.141496 0.274112 0.111425 0.462435 0.152028 0.234308 0.321306 0.204076 0.240310 0.280137 0.240681 0.279350 0.199831 0.232313 0.256316 0.150766 0.360606 0.201205 0.347131 0.166164 0.285501 0.149122 0.065476 0.140479 0.644922 0.104824 0.254506 0.412716 0.227955 Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB -----SCGCGCGG---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00022 Zfp740_secondary Original Motif Reverse Complement Backward 6 8 0.023030 Species: Mus musculus Original motif 0.398967 0.071604 0.323957 0.205472 0.457709 0.058192 0.267218 0.216881 0.393346 0.032365 0.329533 0.244756 0.119528 0.091191 0.190078 0.599202 0.273933 0.123548 0.073075 0.529444 0.068935 0.812883 0.015245 0.102937 0.029664 0.907790 0.024804 0.037742 0.020725 0.933422 0.016796 0.029057 0.015086 0.948448 0.018030 0.018436 0.015628 0.884941 0.061172 0.038259 0.067508 0.744063 0.107305 0.081125 0.108097 0.140614 0.650174 0.101115 0.065696 0.247239 0.506149 0.180916 0.395005 0.077185 0.345914 0.181895 0.527081 0.093650 0.281853 0.097416 0.289378 0.245159 0.348803 0.116660 0.147136 0.260117 0.145993 0.446754 Consensus sequence: DDDTWCCCCCCGGDRVH Reverse complement motif 0.446754 0.260117 0.145993 0.147136 0.289378 0.348803 0.245159 0.116660 0.097416 0.093650 0.281853 0.527081 0.181895 0.077185 0.345914 0.395005 0.065696 0.506149 0.247239 0.180916 0.108097 0.650174 0.140614 0.101115 0.067508 0.107305 0.744063 0.081125 0.015628 0.061172 0.884941 0.038259 0.015086 0.018030 0.948448 0.018436 0.020725 0.016796 0.933422 0.029057 0.029664 0.024804 0.907790 0.037742 0.068935 0.015245 0.812883 0.102937 0.529444 0.123548 0.073075 0.273933 0.599202 0.091191 0.190078 0.119528 0.244756 0.032365 0.329533 0.393346 0.216881 0.058192 0.267218 0.457709 0.205472 0.071604 0.323957 0.398967 Consensus sequence: HVKDCCGGGGGGWADDD Alignment: HVKDCCGGGGGGWADDD ----SCGCGCGG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Reverse Complement Original Motif Forward 6 8 0.024784 Species: Mus musculus Original motif 0.211547 0.282708 0.203472 0.302273 0.141988 0.722437 0.054854 0.080721 0.032605 0.877172 0.012432 0.077792 0.115126 0.070606 0.781290 0.032979 0.003516 0.990021 0.002265 0.004198 0.004715 0.982482 0.009897 0.002906 0.001627 0.975937 0.001662 0.020774 0.262352 0.731732 0.002730 0.003187 0.005890 0.985756 0.002081 0.006273 0.022893 0.090460 0.649322 0.237324 0.023038 0.859949 0.037913 0.079101 0.567633 0.057394 0.166792 0.208181 0.176597 0.331265 0.125308 0.366830 0.183049 0.183774 0.226793 0.406384 Consensus sequence: HCCGCCCCCGCAHB Reverse complement motif 0.406384 0.183774 0.226793 0.183049 0.366830 0.331265 0.125308 0.176597 0.208181 0.057394 0.166792 0.567633 0.023038 0.037913 0.859949 0.079101 0.022893 0.649322 0.090460 0.237324 0.005890 0.002081 0.985756 0.006273 0.262352 0.002730 0.731732 0.003187 0.001627 0.001662 0.975937 0.020774 0.004715 0.009897 0.982482 0.002906 0.003516 0.002265 0.990021 0.004198 0.115126 0.781290 0.070606 0.032979 0.032605 0.012432 0.877172 0.077792 0.141988 0.054854 0.722437 0.080721 0.302273 0.282708 0.203472 0.211547 Consensus sequence: VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB -----CCGCGCGS- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_secondary Reverse Complement Reverse Complement Forward 7 8 0.024956 Species: Mus musculus Original motif 0.182057 0.230014 0.276532 0.311397 0.122004 0.156883 0.366166 0.354947 0.209446 0.335433 0.185677 0.269444 0.140035 0.276547 0.302466 0.280952 0.124879 0.019371 0.809895 0.045854 0.647807 0.117014 0.183956 0.051224 0.021434 0.011745 0.954633 0.012188 0.017853 0.009441 0.315429 0.657277 0.166123 0.008326 0.807215 0.018337 0.022775 0.008972 0.947283 0.020970 0.038795 0.033592 0.781209 0.146405 0.728916 0.032888 0.088836 0.149360 0.197826 0.427858 0.055755 0.318561 0.264938 0.196184 0.092516 0.446362 0.267969 0.195624 0.318766 0.217641 0.225006 0.250404 0.267265 0.257324 Consensus sequence: BBHBGAGTGGGAHHDB Reverse complement motif 0.225006 0.267265 0.250404 0.257324 0.267969 0.318766 0.195624 0.217641 0.446362 0.196184 0.092516 0.264938 0.197826 0.055755 0.427858 0.318561 0.149360 0.032888 0.088836 0.728916 0.038795 0.781209 0.033592 0.146405 0.022775 0.947283 0.008972 0.020970 0.166123 0.807215 0.008326 0.018337 0.657277 0.009441 0.315429 0.017853 0.021434 0.954633 0.011745 0.012188 0.051224 0.117014 0.183956 0.647807 0.124879 0.809895 0.019371 0.045854 0.140035 0.302466 0.276547 0.280952 0.209446 0.185677 0.335433 0.269444 0.122004 0.366166 0.156883 0.354947 0.311397 0.230014 0.276532 0.182057 Consensus sequence: BHHDTCCCACTCBDBV Alignment: BHHDTCCCACTCBDBV ------CCGCGCGS-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 3 Motif name: TFW3 Original motif 0.020000 0.920000 0.050000 0.010000 0.000000 0.030000 0.960000 0.010000 0.000000 0.170000 0.830000 0.000000 0.000000 0.990000 0.000000 0.010000 0.000000 0.270000 0.210000 0.520000 0.030000 0.300000 0.370000 0.300000 0.000000 0.950000 0.050000 0.000000 0.020000 0.130000 0.800000 0.050000 0.000000 0.880000 0.120000 0.000000 0.010000 0.220000 0.760000 0.010000 Consensus sequence: CGGCYBCGCG Reserve complement motif 0.010000 0.760000 0.220000 0.010000 0.000000 0.120000 0.880000 0.000000 0.020000 0.800000 0.130000 0.050000 0.000000 0.050000 0.950000 0.000000 0.030000 0.370000 0.300000 0.300000 0.520000 0.270000 0.210000 0.000000 0.000000 0.000000 0.990000 0.010000 0.000000 0.830000 0.170000 0.000000 0.000000 0.960000 0.030000 0.010000 0.020000 0.050000 0.920000 0.010000 Consensus sequence: CGCGBMGCCG ************************************************************************ Best Matches for Motif ID 3 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00400 Zif268 Reverse Complement Reverse Complement Backward 8 10 0.033186 Species: Mus musculus Original motif 0.104824 0.412716 0.254506 0.227955 0.644922 0.065476 0.140479 0.149122 0.201205 0.166164 0.347131 0.285501 0.360606 0.256316 0.150766 0.232313 0.199831 0.240681 0.279350 0.280137 0.234308 0.204076 0.321306 0.240310 0.274112 0.462435 0.111425 0.152028 0.067070 0.717501 0.073934 0.141496 0.106745 0.084442 0.658566 0.150247 0.025128 0.967053 0.003585 0.004234 0.006412 0.982989 0.003227 0.007371 0.009588 0.877620 0.002571 0.110221 0.621521 0.355443 0.015669 0.007366 0.002600 0.980275 0.004191 0.012934 0.118773 0.026658 0.783843 0.070725 0.022358 0.822101 0.024684 0.130857 0.713212 0.080912 0.128793 0.077084 0.166568 0.250955 0.107934 0.474544 0.225040 0.222494 0.163301 0.389166 0.268976 0.223206 0.265314 0.242504 0.137052 0.229058 0.148439 0.485451 0.135819 0.304550 0.141994 0.417637 0.272440 0.319501 0.230580 0.177478 Consensus sequence: BADHBDHCGCCCMCGCAHHDBBV Reverse complement motif 0.272440 0.230580 0.319501 0.177478 0.417637 0.304550 0.141994 0.135819 0.485451 0.229058 0.148439 0.137052 0.242504 0.223206 0.265314 0.268976 0.389166 0.222494 0.163301 0.225040 0.474544 0.250955 0.107934 0.166568 0.077084 0.080912 0.128793 0.713212 0.022358 0.024684 0.822101 0.130857 0.118773 0.783843 0.026658 0.070725 0.002600 0.004191 0.980275 0.012934 0.007366 0.355443 0.015669 0.621521 0.009588 0.002571 0.877620 0.110221 0.006412 0.003227 0.982989 0.007371 0.025128 0.003585 0.967053 0.004234 0.106745 0.658566 0.084442 0.150247 0.067070 0.073934 0.717501 0.141496 0.274112 0.111425 0.462435 0.152028 0.234308 0.321306 0.204076 0.240310 0.280137 0.240681 0.279350 0.199831 0.232313 0.256316 0.150766 0.360606 0.201205 0.347131 0.166164 0.285501 0.149122 0.065476 0.140479 0.644922 0.104824 0.254506 0.412716 0.227955 Consensus sequence: VVVDHHTGCGYGGGCGDHVHHTB Alignment: VVVDHHTGCGYGGGCGDHVHHTB ------CGCGBMGCCG------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00007 Egr1_primary Original Motif Original Motif Backward 3 10 0.034211 Species: Mus musculus Original motif 0.211547 0.282708 0.203472 0.302273 0.141988 0.722437 0.054854 0.080721 0.032605 0.877172 0.012432 0.077792 0.115126 0.070606 0.781290 0.032979 0.003516 0.990021 0.002265 0.004198 0.004715 0.982482 0.009897 0.002906 0.001627 0.975937 0.001662 0.020774 0.262352 0.731732 0.002730 0.003187 0.005890 0.985756 0.002081 0.006273 0.022893 0.090460 0.649322 0.237324 0.023038 0.859949 0.037913 0.079101 0.567633 0.057394 0.166792 0.208181 0.176597 0.331265 0.125308 0.366830 0.183049 0.183774 0.226793 0.406384 Consensus sequence: HCCGCCCCCGCAHB Reverse complement motif 0.406384 0.183774 0.226793 0.183049 0.366830 0.331265 0.125308 0.176597 0.208181 0.057394 0.166792 0.567633 0.023038 0.037913 0.859949 0.079101 0.022893 0.649322 0.090460 0.237324 0.005890 0.002081 0.985756 0.006273 0.262352 0.002730 0.731732 0.003187 0.001627 0.001662 0.975937 0.020774 0.004715 0.009897 0.982482 0.002906 0.003516 0.002265 0.990021 0.004198 0.115126 0.781290 0.070606 0.032979 0.032605 0.012432 0.877172 0.077792 0.141988 0.054854 0.722437 0.080721 0.302273 0.282708 0.203472 0.211547 Consensus sequence: VHTGCGGGGGCGGH Alignment: HCCGCCCCCGCAHB --CGGCYBCGCG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00527 Foxn4_primary Original Motif Original Motif Forward 12 10 0.035655 Species: Mus musculus Original motif 0.397468 0.109792 0.196359 0.296381 0.102928 0.480888 0.250249 0.165936 0.141925 0.173586 0.377365 0.307124 0.337385 0.368225 0.188518 0.105872 0.354789 0.067393 0.345343 0.232475 0.299392 0.109745 0.215552 0.375311 0.242937 0.170264 0.189245 0.397554 0.461680 0.013180 0.358677 0.166463 0.067089 0.063048 0.008045 0.861819 0.431756 0.128671 0.436022 0.003551 0.006559 0.001814 0.988272 0.003355 0.012929 0.983600 0.001468 0.002003 0.018768 0.000766 0.976433 0.004033 0.003776 0.005554 0.002991 0.987679 0.002737 0.981589 0.009028 0.006646 0.126509 0.273800 0.413161 0.186530 0.100613 0.337225 0.212034 0.350128 0.123741 0.284683 0.060914 0.530661 0.204454 0.143533 0.100462 0.551551 0.202290 0.482197 0.148368 0.167145 0.191625 0.101330 0.607860 0.099185 0.507546 0.086532 0.219554 0.186368 Consensus sequence: DBBVDDDRTRGCGTCBBYTHGA Reverse complement motif 0.186368 0.086532 0.219554 0.507546 0.191625 0.607860 0.101330 0.099185 0.202290 0.148368 0.482197 0.167145 0.551551 0.143533 0.100462 0.204454 0.530661 0.284683 0.060914 0.123741 0.350128 0.337225 0.212034 0.100613 0.126509 0.413161 0.273800 0.186530 0.002737 0.009028 0.981589 0.006646 0.987679 0.005554 0.002991 0.003776 0.018768 0.976433 0.000766 0.004033 0.012929 0.001468 0.983600 0.002003 0.006559 0.988272 0.001814 0.003355 0.431756 0.436022 0.128671 0.003551 0.861819 0.063048 0.008045 0.067089 0.166463 0.013180 0.358677 0.461680 0.397554 0.170264 0.189245 0.242937 0.375311 0.109745 0.215552 0.299392 0.232475 0.067393 0.345343 0.354789 0.337385 0.188518 0.368225 0.105872 0.141925 0.377365 0.173586 0.307124 0.102928 0.250249 0.480888 0.165936 0.296381 0.109792 0.196359 0.397468 Consensus sequence: TCDAMVBGACGCMAKDDDVBBD Alignment: DBBVDDDRTRGCGTCBBYTHGA -----------CGGCYBCGCG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00526 Foxn1_primary Reverse Complement Reverse Complement Forward 11 10 0.041792 Species: Mus musculus Original motif 0.456612 0.057181 0.078281 0.407926 0.460529 0.185506 0.083106 0.270859 0.445717 0.179510 0.239355 0.135417 0.116339 0.145186 0.275331 0.463144 0.239398 0.142078 0.480004 0.138520 0.355157 0.217877 0.284296 0.142670 0.318602 0.444835 0.153321 0.083243 0.609569 0.055866 0.280349 0.054216 0.062297 0.769824 0.027844 0.140035 0.151868 0.019245 0.803188 0.025699 0.011842 0.952534 0.017959 0.017665 0.017665 0.017959 0.952534 0.011842 0.025699 0.803188 0.019245 0.151868 0.140035 0.027844 0.769824 0.062297 0.054216 0.280349 0.055866 0.609569 0.013084 0.624655 0.177956 0.184305 0.287647 0.183527 0.295753 0.233074 0.042309 0.345931 0.198458 0.413301 0.338138 0.266033 0.045367 0.350462 0.302850 0.155320 0.074662 0.467168 0.240926 0.068901 0.283055 0.407118 0.409954 0.183157 0.154186 0.252704 Consensus sequence: WHVBVVMACGCGCGTCDYHWDH Reverse complement motif 0.252704 0.183157 0.154186 0.409954 0.407118 0.068901 0.283055 0.240926 0.467168 0.155320 0.074662 0.302850 0.350462 0.266033 0.045367 0.338138 0.413301 0.345931 0.198458 0.042309 0.287647 0.295753 0.183527 0.233074 0.013084 0.177956 0.624655 0.184305 0.609569 0.280349 0.055866 0.054216 0.140035 0.769824 0.027844 0.062297 0.025699 0.019245 0.803188 0.151868 0.017665 0.952534 0.017959 0.011842 0.011842 0.017959 0.952534 0.017665 0.151868 0.803188 0.019245 0.025699 0.062297 0.027844 0.769824 0.140035 0.054216 0.055866 0.280349 0.609569 0.318602 0.153321 0.444835 0.083243 0.142670 0.217877 0.284296 0.355157 0.239398 0.480004 0.142078 0.138520 0.463144 0.145186 0.275331 0.116339 0.135417 0.179510 0.239355 0.445717 0.270859 0.185506 0.083106 0.460529 0.407926 0.057181 0.078281 0.456612 Consensus sequence: HDWHMHGACGCGCGTRBVVBHW Alignment: HDWHMHGACGCGCGTRBVVBHW ----------CGCGBMGCCG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_primary Reverse Complement Original Motif Forward 6 10 0.041904 Species: Mus musculus Original motif 0.142624 0.111294 0.283688 0.462394 0.221170 0.081404 0.499138 0.198288 0.290070 0.042114 0.604904 0.062912 0.109755 0.559510 0.215454 0.115281 0.111745 0.022727 0.850580 0.014948 0.015907 0.942291 0.005561 0.036241 0.088509 0.003729 0.902805 0.004957 0.004957 0.902805 0.003729 0.088509 0.036241 0.005561 0.942291 0.015907 0.014948 0.850580 0.022727 0.111745 0.325358 0.049424 0.519652 0.105566 0.062912 0.604904 0.042114 0.290070 0.214335 0.388248 0.125912 0.271505 0.128984 0.372787 0.092390 0.405839 0.269058 0.098422 0.484016 0.148504 0.362176 0.156050 0.188642 0.293132 Consensus sequence: DDGCGCGCGCRCHYRD Reverse complement motif 0.293132 0.156050 0.188642 0.362176 0.269058 0.484016 0.098422 0.148504 0.405839 0.372787 0.092390 0.128984 0.214335 0.125912 0.388248 0.271505 0.062912 0.042114 0.604904 0.290070 0.325358 0.519652 0.049424 0.105566 0.014948 0.022727 0.850580 0.111745 0.036241 0.942291 0.005561 0.015907 0.004957 0.003729 0.902805 0.088509 0.088509 0.902805 0.003729 0.004957 0.015907 0.005561 0.942291 0.036241 0.111745 0.850580 0.022727 0.014948 0.109755 0.215454 0.559510 0.115281 0.290070 0.604904 0.042114 0.062912 0.221170 0.499138 0.081404 0.198288 0.462394 0.111294 0.283688 0.142624 Consensus sequence: DMMDGMGCGCGCGCHD Alignment: DDGCGCGCGCRCHYRD -----CGCGBMGCCG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00065 Zfp161_secondary Original Motif Reverse Complement Backward 5 10 0.041943 Species: Mus musculus Original motif 0.142646 0.070072 0.573757 0.213525 0.142215 0.493588 0.067040 0.297157 0.024280 0.923170 0.017567 0.034984 0.015569 0.033118 0.937202 0.014111 0.039447 0.888724 0.020074 0.051755 0.016404 0.008157 0.963367 0.012073 0.063620 0.860169 0.044753 0.031458 0.787911 0.122939 0.024389 0.064761 0.260517 0.103413 0.509585 0.126484 0.203752 0.216621 0.251506 0.328121 0.081075 0.040917 0.820854 0.057154 0.096434 0.760303 0.054942 0.088321 0.266016 0.190184 0.384583 0.159217 0.223960 0.243225 0.228688 0.304127 Consensus sequence: GYCGCGCARBGCVB Reverse complement motif 0.304127 0.243225 0.228688 0.223960 0.266016 0.384583 0.190184 0.159217 0.096434 0.054942 0.760303 0.088321 0.081075 0.820854 0.040917 0.057154 0.328121 0.216621 0.251506 0.203752 0.260517 0.509585 0.103413 0.126484 0.064761 0.122939 0.024389 0.787911 0.063620 0.044753 0.860169 0.031458 0.016404 0.963367 0.008157 0.012073 0.039447 0.020074 0.888724 0.051755 0.015569 0.937202 0.033118 0.014111 0.024280 0.017567 0.923170 0.034984 0.142215 0.067040 0.493588 0.297157 0.142646 0.573757 0.070072 0.213525 Consensus sequence: VVGCVMTGCGCGKC Alignment: VVGCVMTGCGCGKC CGGCYBCGCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_secondary Reverse Complement Original Motif Backward 2 10 0.047518 Species: Mus musculus Original motif 0.146334 0.312326 0.244281 0.297060 0.493155 0.092609 0.162506 0.251729 0.503593 0.059863 0.077561 0.358984 0.763321 0.015264 0.213114 0.008301 0.012415 0.025932 0.945502 0.016151 0.006713 0.015221 0.950098 0.027968 0.062415 0.834303 0.054500 0.048782 0.011010 0.020677 0.928821 0.039493 0.012785 0.024162 0.145822 0.817231 0.133595 0.033962 0.787876 0.044567 0.140697 0.180481 0.428253 0.250570 0.036281 0.806412 0.033510 0.123797 0.157910 0.408607 0.122427 0.311055 0.292185 0.260017 0.197515 0.250283 0.251107 0.124480 0.359447 0.264967 Consensus sequence: BDWAGGCGTGBCHHD Reverse complement motif 0.251107 0.359447 0.124480 0.264967 0.250283 0.260017 0.197515 0.292185 0.157910 0.122427 0.408607 0.311055 0.036281 0.033510 0.806412 0.123797 0.140697 0.428253 0.180481 0.250570 0.133595 0.787876 0.033962 0.044567 0.817231 0.024162 0.145822 0.012785 0.011010 0.928821 0.020677 0.039493 0.062415 0.054500 0.834303 0.048782 0.006713 0.950098 0.015221 0.027968 0.012415 0.945502 0.025932 0.016151 0.008301 0.015264 0.213114 0.763321 0.358984 0.059863 0.077561 0.503593 0.251729 0.092609 0.162506 0.493155 0.146334 0.244281 0.312326 0.297060 Consensus sequence: HHDGBCACGCCTWDB Alignment: BDWAGGCGTGBCHHD ----CGCGBMGCCG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Original Motif Original Motif Backward 1 10 0.049004 Species: Mus musculus Original motif 0.150668 0.131779 0.245665 0.471887 0.316817 0.287314 0.150829 0.245040 0.256473 0.409066 0.109700 0.224761 0.210646 0.220222 0.345010 0.224122 0.166679 0.508939 0.081676 0.242705 0.049351 0.759380 0.088489 0.102780 0.047598 0.785546 0.121957 0.044898 0.004606 0.944933 0.034696 0.015764 0.040252 0.050652 0.890382 0.018713 0.003038 0.913699 0.022449 0.060814 0.028672 0.941477 0.012276 0.017575 0.635243 0.139731 0.110495 0.114531 0.240016 0.385948 0.182848 0.191188 0.210430 0.274127 0.085171 0.430272 0.088118 0.454598 0.208989 0.248295 0.181269 0.265028 0.149023 0.404680 0.101070 0.252682 0.368542 0.277706 Consensus sequence: DHHBCCCCGCCAHHBHB Reverse complement motif 0.101070 0.368542 0.252682 0.277706 0.404680 0.265028 0.149023 0.181269 0.088118 0.208989 0.454598 0.248295 0.430272 0.274127 0.085171 0.210430 0.240016 0.182848 0.385948 0.191188 0.114531 0.139731 0.110495 0.635243 0.028672 0.012276 0.941477 0.017575 0.003038 0.022449 0.913699 0.060814 0.040252 0.890382 0.050652 0.018713 0.004606 0.034696 0.944933 0.015764 0.047598 0.121957 0.785546 0.044898 0.049351 0.088489 0.759380 0.102780 0.166679 0.081676 0.508939 0.242705 0.210646 0.345010 0.220222 0.224122 0.256473 0.109700 0.409066 0.224761 0.245040 0.287314 0.150829 0.316817 0.471887 0.131779 0.245665 0.150668 Consensus sequence: BHBHDTGGCGGGGBDHD Alignment: DHHBCCCCGCCAHHBHB -------CGGCYBCGCG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00087 Tcfap2c_primary Original Motif Reverse Complement Forward 3 10 0.049990 Species: Mus musculus Original motif 0.453894 0.104785 0.095366 0.345954 0.232091 0.189298 0.180541 0.398071 0.233238 0.261214 0.065556 0.439992 0.012319 0.459636 0.511133 0.016912 0.008159 0.984661 0.002866 0.004314 0.001420 0.885962 0.001808 0.110810 0.005689 0.345363 0.111901 0.537046 0.035614 0.353586 0.534122 0.076679 0.537046 0.111901 0.345363 0.005689 0.110810 0.001808 0.885962 0.001420 0.004314 0.002866 0.984661 0.008159 0.016912 0.511133 0.459636 0.012319 0.313235 0.097541 0.435018 0.154206 0.570019 0.140594 0.123600 0.165788 0.326417 0.176576 0.220289 0.276718 Consensus sequence: WHHSCCYSRGGSDAD Reverse complement motif 0.276718 0.176576 0.220289 0.326417 0.165788 0.140594 0.123600 0.570019 0.313235 0.435018 0.097541 0.154206 0.016912 0.459636 0.511133 0.012319 0.004314 0.984661 0.002866 0.008159 0.110810 0.885962 0.001808 0.001420 0.005689 0.111901 0.345363 0.537046 0.035614 0.534122 0.353586 0.076679 0.537046 0.345363 0.111901 0.005689 0.001420 0.001808 0.885962 0.110810 0.008159 0.002866 0.984661 0.004314 0.012319 0.511133 0.459636 0.016912 0.439992 0.261214 0.065556 0.233238 0.398071 0.189298 0.180541 0.232091 0.345954 0.104785 0.095366 0.453894 Consensus sequence: DTHSCCKSMGGSHHW Alignment: DTHSCCKSMGGSHHW --CGGCYBCGCG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00005 Tcfap2a_primary Original Motif Reverse Complement Forward 3 10 0.050046 Species: Mus musculus Original motif 0.422613 0.103833 0.119614 0.353939 0.249412 0.169205 0.202313 0.379071 0.229443 0.231233 0.068690 0.470634 0.013814 0.501744 0.463635 0.020806 0.006744 0.985507 0.003252 0.004497 0.001758 0.859562 0.001396 0.137285 0.005460 0.315890 0.186790 0.491861 0.040326 0.375312 0.497433 0.086929 0.491861 0.186790 0.315890 0.005460 0.137285 0.001396 0.859562 0.001758 0.004497 0.003252 0.985507 0.006744 0.020806 0.463635 0.501744 0.013814 0.348377 0.094358 0.419593 0.137673 0.559411 0.134625 0.133295 0.172668 0.331903 0.197670 0.240404 0.230023 Consensus sequence: WDHSCCYSRGGSRAD Reverse complement motif 0.230023 0.197670 0.240404 0.331903 0.172668 0.134625 0.133295 0.559411 0.348377 0.419593 0.094358 0.137673 0.020806 0.501744 0.463635 0.013814 0.004497 0.985507 0.003252 0.006744 0.137285 0.859562 0.001396 0.001758 0.005460 0.186790 0.315890 0.491861 0.040326 0.497433 0.375312 0.086929 0.491861 0.315890 0.186790 0.005460 0.001758 0.001396 0.859562 0.137285 0.006744 0.003252 0.985507 0.004497 0.013814 0.463635 0.501744 0.020806 0.470634 0.231233 0.068690 0.229443 0.379071 0.169205 0.202313 0.249412 0.353939 0.103833 0.119614 0.422613 Consensus sequence: DTMSCCKSMGGSHDW Alignment: DTMSCCKSMGGSHDW --CGGCYBCGCG--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 1 Motif ID: 4 Motif name: TFF1 Original motif 0.180952 0.533333 0.142857 0.142857 0.019048 0.009524 0.952381 0.019048 0.019048 0.047619 0.914286 0.019048 0.400000 0.333333 0.219048 0.047619 0.028571 0.047619 0.885714 0.038095 0.038095 0.895238 0.009524 0.057143 0.133333 0.733333 0.066667 0.066667 0.038095 0.038095 0.876190 0.047619 0.123810 0.752381 0.114286 0.009524 0.314286 0.190476 0.390476 0.104762 0.123810 0.028571 0.771429 0.076190 0.057143 0.904762 0.028571 0.009524 Consensus sequence: CGGVGCCGCVGC Reserve complement motif 0.057143 0.028571 0.904762 0.009524 0.123810 0.771429 0.028571 0.076190 0.314286 0.390476 0.190476 0.104762 0.123810 0.114286 0.752381 0.009524 0.038095 0.876190 0.038095 0.047619 0.133333 0.066667 0.733333 0.066667 0.038095 0.009524 0.895238 0.057143 0.028571 0.885714 0.047619 0.038095 0.047619 0.333333 0.219048 0.400000 0.019048 0.914286 0.047619 0.019048 0.019048 0.952381 0.009524 0.019048 0.180952 0.142857 0.533333 0.142857 Consensus sequence: GCVGCGGCBCCG ************************************************************************ Best Matches for Motif ID 4 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00003 E2F3_secondary Original Motif Original Motif Forward 5 12 0.042359 Species: Mus musculus Original motif 0.265095 0.268267 0.222997 0.243641 0.200676 0.255224 0.341788 0.202312 0.178293 0.362068 0.104617 0.355022 0.351308 0.049870 0.101991 0.496832 0.114543 0.445994 0.008584 0.430879 0.113589 0.020854 0.846807 0.018750 0.004661 0.132010 0.859240 0.004088 0.030896 0.962007 0.004017 0.003080 0.006194 0.002090 0.965564 0.026152 0.008009 0.911831 0.077009 0.003151 0.029519 0.830096 0.011333 0.129053 0.764710 0.016406 0.088627 0.130257 0.530327 0.265186 0.100721 0.103765 0.331689 0.153148 0.308482 0.206682 0.332536 0.311591 0.232118 0.123755 0.175189 0.233372 0.375563 0.215876 0.183884 0.334856 0.283993 0.197267 Consensus sequence: HBHWYGGCGCCAMDVBB Reverse complement motif 0.183884 0.283993 0.334856 0.197267 0.175189 0.375563 0.233372 0.215876 0.123755 0.311591 0.232118 0.332536 0.206682 0.153148 0.308482 0.331689 0.103765 0.265186 0.100721 0.530327 0.130257 0.016406 0.088627 0.764710 0.029519 0.011333 0.830096 0.129053 0.008009 0.077009 0.911831 0.003151 0.006194 0.965564 0.002090 0.026152 0.030896 0.004017 0.962007 0.003080 0.004661 0.859240 0.132010 0.004088 0.113589 0.846807 0.020854 0.018750 0.114543 0.008584 0.445994 0.430879 0.496832 0.049870 0.101991 0.351308 0.178293 0.104617 0.362068 0.355022 0.200676 0.341788 0.255224 0.202312 0.265095 0.222997 0.268267 0.243641 Consensus sequence: BBBDYTGGCGCCKWDBD Alignment: HBHWYGGCGCCAMDVBB ----CGGVGCCGCVGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00001 E2F2_secondary Original Motif Original Motif Forward 5 12 0.046515 Species: Mus musculus Original motif 0.270440 0.280855 0.182254 0.266451 0.232294 0.286577 0.287022 0.194107 0.182719 0.289524 0.187726 0.340031 0.321668 0.055383 0.129604 0.493345 0.105971 0.476989 0.007580 0.409460 0.150172 0.013701 0.803513 0.032614 0.004559 0.194378 0.794741 0.006322 0.047843 0.942269 0.005918 0.003970 0.010089 0.002584 0.946109 0.041218 0.012276 0.865373 0.117935 0.004415 0.045912 0.779220 0.006935 0.167933 0.781965 0.011623 0.113119 0.093293 0.612968 0.172164 0.096061 0.118806 0.357204 0.206997 0.222456 0.213343 0.292059 0.261101 0.279674 0.167166 0.164667 0.173227 0.371882 0.290223 0.157765 0.278892 0.333119 0.230224 Consensus sequence: HVBWYGGCGCCAADVBB Reverse complement motif 0.157765 0.333119 0.278892 0.230224 0.164667 0.371882 0.173227 0.290223 0.167166 0.261101 0.279674 0.292059 0.213343 0.206997 0.222456 0.357204 0.118806 0.172164 0.096061 0.612968 0.093293 0.011623 0.113119 0.781965 0.045912 0.006935 0.779220 0.167933 0.012276 0.117935 0.865373 0.004415 0.010089 0.946109 0.002584 0.041218 0.047843 0.005918 0.942269 0.003970 0.004559 0.794741 0.194378 0.006322 0.150172 0.803513 0.013701 0.032614 0.105971 0.007580 0.476989 0.409460 0.493345 0.055383 0.129604 0.321668 0.340031 0.289524 0.187726 0.182719 0.232294 0.287022 0.286577 0.194107 0.270440 0.182254 0.280855 0.266451 Consensus sequence: BBBDTTGGCGCCKWVVD Alignment: HVBWYGGCGCCAADVBB ----CGGVGCCGCVGC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00088 Plagl1_primary Reverse Complement Original Motif Forward 1 12 0.047270 Species: Mus musculus Original motif 0.119709 0.241933 0.299696 0.338662 0.236295 0.277376 0.191945 0.294383 0.203722 0.152043 0.467305 0.176931 0.187661 0.114330 0.513662 0.184347 0.047306 0.041411 0.838415 0.072868 0.131945 0.003749 0.848921 0.015385 0.003800 0.006713 0.960656 0.028832 0.002515 0.652482 0.343047 0.001955 0.001955 0.343047 0.652482 0.002515 0.028832 0.960656 0.006713 0.003800 0.015385 0.848921 0.003749 0.131945 0.072868 0.838415 0.041411 0.047306 0.193804 0.543600 0.063385 0.199211 0.210649 0.233823 0.258755 0.296773 0.376439 0.191612 0.261004 0.170945 0.230078 0.256519 0.299785 0.213618 Consensus sequence: BHDGGGGSSCCCCBVV Reverse complement motif 0.230078 0.299785 0.256519 0.213618 0.170945 0.191612 0.261004 0.376439 0.296773 0.233823 0.258755 0.210649 0.193804 0.063385 0.543600 0.199211 0.072868 0.041411 0.838415 0.047306 0.015385 0.003749 0.848921 0.131945 0.028832 0.006713 0.960656 0.003800 0.001955 0.652482 0.343047 0.002515 0.002515 0.343047 0.652482 0.001955 0.003800 0.960656 0.006713 0.028832 0.131945 0.848921 0.003749 0.015385 0.047306 0.838415 0.041411 0.072868 0.187661 0.513662 0.114330 0.184347 0.203722 0.467305 0.152043 0.176931 0.294383 0.277376 0.191945 0.236295 0.338662 0.241933 0.299696 0.119709 Consensus sequence: VBVGGGGSSCCCCHHV Alignment: BHDGGGGSSCCCCBVV GCVGCGGCBCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Reverse Complement Original Motif Forward 5 12 0.047691 Species: Mus musculus Original motif 0.168852 0.325948 0.188604 0.316596 0.150343 0.193286 0.241301 0.415069 0.091518 0.482905 0.122928 0.302648 0.472493 0.198776 0.225796 0.102935 0.294513 0.179919 0.447250 0.078318 0.014660 0.972080 0.005591 0.007668 0.954848 0.008107 0.008474 0.028571 0.006076 0.178912 0.760021 0.054991 0.052082 0.817415 0.124797 0.005707 0.019342 0.010406 0.008905 0.961347 0.005455 0.008073 0.977684 0.008788 0.042946 0.715551 0.087020 0.154483 0.116888 0.241739 0.170073 0.471300 0.315931 0.324343 0.291451 0.068274 0.199164 0.366921 0.163690 0.270226 0.218561 0.211076 0.187732 0.382631 0.145317 0.139808 0.389262 0.325614 Consensus sequence: BBYVVCAGCTGCBVHHD Reverse complement motif 0.145317 0.389262 0.139808 0.325614 0.382631 0.211076 0.187732 0.218561 0.199164 0.163690 0.366921 0.270226 0.315931 0.291451 0.324343 0.068274 0.471300 0.241739 0.170073 0.116888 0.042946 0.087020 0.715551 0.154483 0.005455 0.977684 0.008073 0.008788 0.961347 0.010406 0.008905 0.019342 0.052082 0.124797 0.817415 0.005707 0.006076 0.760021 0.178912 0.054991 0.028571 0.008107 0.008474 0.954848 0.014660 0.005591 0.972080 0.007668 0.294513 0.447250 0.179919 0.078318 0.102935 0.198776 0.225796 0.472493 0.091518 0.122928 0.482905 0.302648 0.415069 0.193286 0.241301 0.150343 0.168852 0.188604 0.325948 0.316596 Consensus sequence: HHDVVGCAGCTGVBKVB Alignment: BBYVVCAGCTGCBVHHD ----GCVGCGGCBCCG- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00043 Bcl6b_secondary Reverse Complement Original Motif Backward 5 12 0.050818 Species: Mus musculus Original motif 0.316572 0.278382 0.152556 0.252490 0.167141 0.257034 0.259894 0.315931 0.175523 0.325956 0.259996 0.238525 0.165052 0.385677 0.239449 0.209822 0.069489 0.782718 0.072454 0.075339 0.049943 0.800636 0.031988 0.117433 0.223382 0.060306 0.552691 0.163621 0.072944 0.818252 0.034406 0.074398 0.070535 0.845127 0.062712 0.021626 0.031035 0.859354 0.055424 0.054187 0.063668 0.798503 0.067274 0.070554 0.348488 0.030697 0.197179 0.423636 0.307220 0.256470 0.181009 0.255301 0.460933 0.285057 0.090258 0.163752 0.315798 0.228431 0.171135 0.284637 0.374527 0.268328 0.198810 0.158335 Consensus sequence: HBBBCCGCCCCWHHHV Reverse complement motif 0.158335 0.268328 0.198810 0.374527 0.284637 0.228431 0.171135 0.315798 0.163752 0.285057 0.090258 0.460933 0.255301 0.256470 0.181009 0.307220 0.423636 0.030697 0.197179 0.348488 0.063668 0.067274 0.798503 0.070554 0.031035 0.055424 0.859354 0.054187 0.070535 0.062712 0.845127 0.021626 0.072944 0.034406 0.818252 0.074398 0.223382 0.552691 0.060306 0.163621 0.049943 0.031988 0.800636 0.117433 0.069489 0.072454 0.782718 0.075339 0.165052 0.239449 0.385677 0.209822 0.175523 0.259996 0.325956 0.238525 0.315931 0.257034 0.259894 0.167141 0.252490 0.278382 0.152556 0.316572 Consensus sequence: BHHHWGGGGCGGBBVH Alignment: HBBBCCGCCCCWHHHV GCVGCGGCBCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00033 Zfp410_secondary Reverse Complement Original Motif Backward 5 12 0.053342 Species: Mus musculus Original motif 0.162979 0.284781 0.237433 0.314807 0.182449 0.447584 0.069464 0.300502 0.298973 0.261014 0.213211 0.226802 0.136039 0.433062 0.144274 0.286625 0.180084 0.395933 0.158565 0.265418 0.069354 0.748510 0.068898 0.113238 0.060485 0.717828 0.075333 0.146354 0.023280 0.071762 0.645500 0.259457 0.166896 0.749762 0.062730 0.020612 0.050401 0.775248 0.089072 0.085279 0.103847 0.767557 0.068804 0.059791 0.064815 0.748318 0.114588 0.072280 0.340921 0.071942 0.242981 0.344157 0.301967 0.263512 0.165927 0.268594 0.479800 0.222955 0.118441 0.178803 0.229469 0.283621 0.143099 0.343811 0.261733 0.180191 0.169905 0.388170 Consensus sequence: BHHBHCCGCCCCDHHHH Reverse complement motif 0.388170 0.180191 0.169905 0.261733 0.343811 0.283621 0.143099 0.229469 0.178803 0.222955 0.118441 0.479800 0.268594 0.263512 0.165927 0.301967 0.344157 0.071942 0.242981 0.340921 0.064815 0.114588 0.748318 0.072280 0.103847 0.068804 0.767557 0.059791 0.050401 0.089072 0.775248 0.085279 0.166896 0.062730 0.749762 0.020612 0.023280 0.645500 0.071762 0.259457 0.060485 0.075333 0.717828 0.146354 0.069354 0.068898 0.748510 0.113238 0.180084 0.158565 0.395933 0.265418 0.136039 0.144274 0.433062 0.286625 0.226802 0.261014 0.213211 0.298973 0.182449 0.069464 0.447584 0.300502 0.314807 0.284781 0.237433 0.162979 Consensus sequence: HHHHDGGGGCGGDBHDV Alignment: BHHBHCCGCCCCDHHHH -GCVGCGGCBCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00539 Gli2_v016060_secondary Original Motif Reverse Complement Forward 9 12 0.056120 Species: Mus musculus Original motif 0.533199 0.080715 0.330435 0.055650 0.152031 0.212841 0.110234 0.524893 0.223934 0.264217 0.087037 0.424811 0.115097 0.339994 0.343861 0.201048 0.124993 0.418259 0.365642 0.091106 0.158365 0.292428 0.088361 0.460847 0.165479 0.561778 0.022254 0.250489 0.136873 0.259822 0.579763 0.023543 0.109570 0.747495 0.055128 0.087807 0.061912 0.792986 0.109031 0.036071 0.508703 0.267806 0.169766 0.053725 0.040912 0.838888 0.057470 0.062730 0.330554 0.606077 0.016192 0.047177 0.068079 0.563969 0.029742 0.338209 0.388799 0.291667 0.191284 0.128249 0.183283 0.578079 0.171100 0.067538 0.165163 0.097206 0.631377 0.106253 0.128564 0.435496 0.253275 0.182665 0.103395 0.088222 0.234758 0.573625 0.432879 0.276641 0.155895 0.134585 0.339199 0.148928 0.311036 0.200836 0.211958 0.298526 0.158443 0.331072 Consensus sequence: RTHBSYCGCCMCMYVCGBTVDH Reverse complement motif 0.331072 0.298526 0.158443 0.211958 0.200836 0.148928 0.311036 0.339199 0.134585 0.276641 0.155895 0.432879 0.573625 0.088222 0.234758 0.103395 0.128564 0.253275 0.435496 0.182665 0.165163 0.631377 0.097206 0.106253 0.183283 0.171100 0.578079 0.067538 0.128249 0.291667 0.191284 0.388799 0.068079 0.029742 0.563969 0.338209 0.330554 0.016192 0.606077 0.047177 0.040912 0.057470 0.838888 0.062730 0.053725 0.267806 0.169766 0.508703 0.061912 0.109031 0.792986 0.036071 0.109570 0.055128 0.747495 0.087807 0.136873 0.579763 0.259822 0.023543 0.165479 0.022254 0.561778 0.250489 0.460847 0.292428 0.088361 0.158365 0.124993 0.365642 0.418259 0.091106 0.115097 0.343861 0.339994 0.201048 0.424811 0.264217 0.087037 0.223934 0.524893 0.212841 0.110234 0.152031 0.055650 0.080715 0.330435 0.533199 Consensus sequence: HDBABCGBKRGYGGCGMSBHAK Alignment: HDBABCGBKRGYGGCGMSBHAK --------CGGVGCCGCVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00002 Sp4_primary Reverse Complement Original Motif Forward 2 12 0.057756 Species: Mus musculus Original motif 0.155386 0.223380 0.374454 0.246780 0.247106 0.159582 0.345111 0.248201 0.238889 0.258354 0.165304 0.337454 0.255612 0.489586 0.051621 0.203182 0.450100 0.545383 0.001071 0.003447 0.003704 0.991007 0.002456 0.002833 0.035504 0.001814 0.928129 0.034553 0.001494 0.991406 0.003414 0.003686 0.003045 0.990628 0.005182 0.001145 0.000990 0.963237 0.001215 0.034557 0.148016 0.838396 0.000666 0.012922 0.014261 0.905847 0.007200 0.072692 0.083394 0.270068 0.058368 0.588170 0.149141 0.286783 0.142802 0.421274 0.204851 0.347195 0.253356 0.194597 0.184442 0.299908 0.194408 0.321242 0.125793 0.380109 0.245318 0.248780 Consensus sequence: BDHHMCGCCCCCTHVBB Reverse complement motif 0.125793 0.245318 0.380109 0.248780 0.321242 0.299908 0.194408 0.184442 0.204851 0.253356 0.347195 0.194597 0.421274 0.286783 0.142802 0.149141 0.588170 0.270068 0.058368 0.083394 0.014261 0.007200 0.905847 0.072692 0.148016 0.000666 0.838396 0.012922 0.000990 0.001215 0.963237 0.034557 0.003045 0.005182 0.990628 0.001145 0.001494 0.003414 0.991406 0.003686 0.035504 0.928129 0.001814 0.034553 0.003704 0.002456 0.991007 0.002833 0.450100 0.001071 0.545383 0.003447 0.255612 0.051621 0.489586 0.203182 0.337454 0.258354 0.165304 0.238889 0.247106 0.345111 0.159582 0.248201 0.155386 0.374454 0.223380 0.246780 Consensus sequence: BVVHAGGGGGCGRDHHB Alignment: BDHHMCGCCCCCTHVBB -GCVGCGGCBCCG---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00000 Smad3_secondary Reverse Complement Original Motif Forward 1 12 0.057770 Species: Mus musculus Original motif 0.150668 0.131779 0.245665 0.471887 0.316817 0.287314 0.150829 0.245040 0.256473 0.409066 0.109700 0.224761 0.210646 0.220222 0.345010 0.224122 0.166679 0.508939 0.081676 0.242705 0.049351 0.759380 0.088489 0.102780 0.047598 0.785546 0.121957 0.044898 0.004606 0.944933 0.034696 0.015764 0.040252 0.050652 0.890382 0.018713 0.003038 0.913699 0.022449 0.060814 0.028672 0.941477 0.012276 0.017575 0.635243 0.139731 0.110495 0.114531 0.240016 0.385948 0.182848 0.191188 0.210430 0.274127 0.085171 0.430272 0.088118 0.454598 0.208989 0.248295 0.181269 0.265028 0.149023 0.404680 0.101070 0.252682 0.368542 0.277706 Consensus sequence: DHHBCCCCGCCAHHBHB Reverse complement motif 0.101070 0.368542 0.252682 0.277706 0.404680 0.265028 0.149023 0.181269 0.088118 0.208989 0.454598 0.248295 0.430272 0.274127 0.085171 0.210430 0.240016 0.182848 0.385948 0.191188 0.114531 0.139731 0.110495 0.635243 0.028672 0.012276 0.941477 0.017575 0.003038 0.022449 0.913699 0.060814 0.040252 0.890382 0.050652 0.018713 0.004606 0.034696 0.944933 0.015764 0.047598 0.121957 0.785546 0.044898 0.049351 0.088489 0.759380 0.102780 0.166679 0.081676 0.508939 0.242705 0.210646 0.345010 0.220222 0.224122 0.256473 0.109700 0.409066 0.224761 0.245040 0.287314 0.150829 0.316817 0.471887 0.131779 0.245665 0.150668 Consensus sequence: BHBHDTGGCGGGGBDHD Alignment: BHBHDTGGCGGGGBDHD GCVGCGGCBCCG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00540 Gli3_v015681_secondary Original Motif Original Motif Backward 3 12 0.058116 Species: Mus musculus Original motif 0.214165 0.143436 0.372522 0.269876 0.314445 0.406003 0.160351 0.119201 0.137147 0.092924 0.042921 0.727007 0.044121 0.072843 0.051741 0.831295 0.261292 0.324124 0.298498 0.116086 0.258125 0.323243 0.263362 0.155271 0.204557 0.589399 0.107153 0.098891 0.371021 0.244027 0.291102 0.093849 0.096327 0.572718 0.011797 0.319159 0.027282 0.046183 0.844519 0.082016 0.018921 0.012887 0.915917 0.052275 0.364793 0.166722 0.084229 0.384256 0.028216 0.011233 0.951056 0.009495 0.054974 0.004738 0.890377 0.049911 0.006802 0.312915 0.134247 0.546036 0.241289 0.628210 0.104788 0.025713 0.237863 0.302807 0.213018 0.246311 0.349399 0.203220 0.086635 0.360746 0.386634 0.144693 0.246895 0.221779 0.425101 0.354676 0.093374 0.126849 0.060272 0.391320 0.104905 0.443503 0.162090 0.190233 0.227433 0.420244 Consensus sequence: DVTTVVCVYGGHGGYCHHDMYB Reverse complement motif 0.420244 0.190233 0.227433 0.162090 0.443503 0.391320 0.104905 0.060272 0.126849 0.354676 0.093374 0.425101 0.221779 0.144693 0.246895 0.386634 0.360746 0.203220 0.086635 0.349399 0.237863 0.213018 0.302807 0.246311 0.241289 0.104788 0.628210 0.025713 0.546036 0.312915 0.134247 0.006802 0.054974 0.890377 0.004738 0.049911 0.028216 0.951056 0.011233 0.009495 0.384256 0.166722 0.084229 0.364793 0.018921 0.915917 0.012887 0.052275 0.027282 0.844519 0.046183 0.082016 0.096327 0.011797 0.572718 0.319159 0.093849 0.244027 0.291102 0.371021 0.204557 0.107153 0.589399 0.098891 0.258125 0.263362 0.323243 0.155271 0.261292 0.298498 0.324124 0.116086 0.831295 0.072843 0.051741 0.044121 0.727007 0.092924 0.042921 0.137147 0.314445 0.160351 0.406003 0.119201 0.214165 0.372522 0.143436 0.269876 Consensus sequence: VMYDHDGMCCHCCKBGVVAAVH Alignment: DVTTVVCVYGGHGGYCHHDMYB --------CGGVGCCGCVGC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 13 Motif name: tkAAATAATAtw Original motif 0.233333 0.200000 0.166667 0.400000 0.233333 0.133333 0.266667 0.366667 0.733333 0.033333 0.033333 0.200000 0.866667 0.033333 0.033333 0.066667 0.833333 0.000000 0.033333 0.133333 0.166667 0.000000 0.000000 0.833333 0.866667 0.066667 0.000000 0.066667 0.800000 0.033333 0.033333 0.133333 0.000000 0.000000 0.000000 1.000000 0.966667 0.033333 0.000000 0.000000 0.166667 0.200000 0.133333 0.500000 0.400000 0.100000 0.100000 0.400000 Consensus sequence: HDAAATAATAHW Reserve complement motif 0.400000 0.100000 0.100000 0.400000 0.500000 0.200000 0.133333 0.166667 0.000000 0.033333 0.000000 0.966667 1.000000 0.000000 0.000000 0.000000 0.133333 0.033333 0.033333 0.800000 0.066667 0.066667 0.000000 0.866667 0.833333 0.000000 0.000000 0.166667 0.133333 0.000000 0.033333 0.833333 0.066667 0.033333 0.033333 0.866667 0.200000 0.033333 0.033333 0.733333 0.366667 0.133333 0.266667 0.233333 0.400000 0.200000 0.166667 0.233333 Consensus sequence: WHTATTATTTDH ************************************************************************ Best Matches for Motif ID 13 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Reverse Complement Backward 3 12 0.003532 Species: Mus musculus Original motif 0.405345 0.293266 0.220907 0.080482 0.398063 0.099034 0.333525 0.169378 0.049753 0.190411 0.336789 0.423048 0.243698 0.226261 0.324346 0.205696 0.030873 0.549741 0.008321 0.411065 0.714225 0.228092 0.020960 0.036723 0.833992 0.010944 0.021918 0.133146 0.008898 0.026169 0.008341 0.956591 0.811684 0.004889 0.004751 0.178676 0.952107 0.004322 0.004587 0.038984 0.925365 0.008360 0.006811 0.059464 0.850659 0.058250 0.065237 0.025855 0.193369 0.242985 0.049515 0.514131 0.266774 0.080601 0.239781 0.412844 0.335522 0.125500 0.188170 0.350809 0.407171 0.120540 0.187300 0.284989 0.281181 0.242348 0.160247 0.316224 Consensus sequence: VDKVYAATAAAATDDDH Reverse complement motif 0.316224 0.242348 0.160247 0.281181 0.284989 0.120540 0.187300 0.407171 0.350809 0.125500 0.188170 0.335522 0.412844 0.080601 0.239781 0.266774 0.514131 0.242985 0.049515 0.193369 0.025855 0.058250 0.065237 0.850659 0.059464 0.008360 0.006811 0.925365 0.038984 0.004322 0.004587 0.952107 0.178676 0.004889 0.004751 0.811684 0.956591 0.026169 0.008341 0.008898 0.133146 0.010944 0.021918 0.833992 0.036723 0.228092 0.020960 0.714225 0.030873 0.008321 0.549741 0.411065 0.243698 0.324346 0.226261 0.205696 0.423048 0.190411 0.336789 0.049753 0.169378 0.099034 0.333525 0.398063 0.080482 0.293266 0.220907 0.405345 Consensus sequence: HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB ---WHTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00244 Tlx2 Original Motif Original Motif Forward 4 12 0.006460 Species: Mus musculus Original motif 0.105929 0.200768 0.276304 0.416999 0.605737 0.082484 0.045449 0.266331 0.616140 0.070870 0.219578 0.093411 0.207168 0.101768 0.138909 0.552155 0.205588 0.314073 0.063564 0.416776 0.753104 0.060249 0.064598 0.122049 0.785626 0.028841 0.041793 0.143739 0.035001 0.038504 0.018619 0.907876 0.039875 0.038526 0.009504 0.912095 0.920557 0.010057 0.045031 0.024356 0.806507 0.031077 0.030857 0.131559 0.170184 0.056552 0.043413 0.729851 0.630114 0.051409 0.080078 0.238398 0.554265 0.093528 0.223411 0.128796 0.183854 0.390999 0.093847 0.331300 0.289988 0.101149 0.103803 0.505061 0.400594 0.061089 0.136478 0.401839 Consensus sequence: BAATHAATTAATAAHWW Reverse complement motif 0.401839 0.061089 0.136478 0.400594 0.505061 0.101149 0.103803 0.289988 0.183854 0.093847 0.390999 0.331300 0.128796 0.093528 0.223411 0.554265 0.238398 0.051409 0.080078 0.630114 0.729851 0.056552 0.043413 0.170184 0.131559 0.031077 0.030857 0.806507 0.024356 0.010057 0.045031 0.920557 0.912095 0.038526 0.009504 0.039875 0.907876 0.038504 0.018619 0.035001 0.143739 0.028841 0.041793 0.785626 0.122049 0.060249 0.064598 0.753104 0.416776 0.314073 0.063564 0.205588 0.552155 0.101768 0.138909 0.207168 0.093411 0.070870 0.219578 0.616140 0.266331 0.082484 0.045449 0.605737 0.416999 0.200768 0.276304 0.105929 Consensus sequence: WWDTTATTAATTHATTV Alignment: BAATHAATTAATAAHWW ---HDAAATAATAHW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00051 Sox8_primary Original Motif Reverse Complement Backward 4 12 0.012067 Species: Mus musculus Original motif 0.244952 0.197659 0.278014 0.279374 0.244434 0.136006 0.278446 0.341114 0.512025 0.129954 0.139069 0.218951 0.190001 0.086232 0.125500 0.598267 0.154692 0.325860 0.193904 0.325544 0.384624 0.130540 0.035110 0.449726 0.945021 0.006713 0.011975 0.036291 0.008386 0.026630 0.004166 0.960817 0.020908 0.005554 0.009294 0.964244 0.149285 0.038995 0.806085 0.005635 0.110990 0.007155 0.007797 0.874058 0.087283 0.099671 0.059611 0.753435 0.250662 0.432576 0.082152 0.234610 0.251277 0.174578 0.147771 0.426374 0.205121 0.137656 0.296366 0.360857 0.316796 0.152457 0.164403 0.366344 0.475864 0.128717 0.153551 0.241867 Consensus sequence: DDATBWATTGTTHHDDD Reverse complement motif 0.241867 0.128717 0.153551 0.475864 0.366344 0.152457 0.164403 0.316796 0.360857 0.137656 0.296366 0.205121 0.426374 0.174578 0.147771 0.251277 0.250662 0.082152 0.432576 0.234610 0.753435 0.099671 0.059611 0.087283 0.874058 0.007155 0.007797 0.110990 0.149285 0.806085 0.038995 0.005635 0.964244 0.005554 0.009294 0.020908 0.960817 0.026630 0.004166 0.008386 0.036291 0.006713 0.011975 0.945021 0.449726 0.130540 0.035110 0.384624 0.154692 0.193904 0.325860 0.325544 0.598267 0.086232 0.125500 0.190001 0.218951 0.129954 0.139069 0.512025 0.341114 0.136006 0.278446 0.244434 0.279374 0.197659 0.278014 0.244952 Consensus sequence: DDDHDAACAATWBATDD Alignment: DDDHDAACAATWBATDD --HDAAATAATAHW--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Reverse Complement Forward 3 12 0.012377 Species: Mus musculus Original motif 0.279189 0.316791 0.190404 0.213616 0.297705 0.175638 0.191020 0.335637 0.333485 0.203858 0.174034 0.288623 0.046444 0.540349 0.083237 0.329969 0.016780 0.648667 0.003870 0.330682 0.679959 0.116873 0.002745 0.200422 0.936496 0.002013 0.026876 0.034615 0.004741 0.008734 0.003861 0.982665 0.904624 0.000869 0.005345 0.089162 0.967883 0.002295 0.001003 0.028819 0.980087 0.004768 0.002887 0.012258 0.898523 0.041633 0.022776 0.037069 0.246903 0.292446 0.069240 0.391411 0.192528 0.300908 0.105655 0.400908 0.247610 0.343317 0.190760 0.218313 0.246702 0.253595 0.176298 0.323404 Consensus sequence: HDHYYAATAAAAHHHH Reverse complement motif 0.323404 0.253595 0.176298 0.246702 0.247610 0.190760 0.343317 0.218313 0.400908 0.300908 0.105655 0.192528 0.391411 0.292446 0.069240 0.246903 0.037069 0.041633 0.022776 0.898523 0.012258 0.004768 0.002887 0.980087 0.028819 0.002295 0.001003 0.967883 0.089162 0.000869 0.005345 0.904624 0.982665 0.008734 0.003861 0.004741 0.034615 0.002013 0.026876 0.936496 0.200422 0.116873 0.002745 0.679959 0.016780 0.003870 0.648667 0.330682 0.046444 0.083237 0.540349 0.329969 0.288623 0.203858 0.174034 0.333485 0.335637 0.175638 0.191020 0.297705 0.279189 0.190404 0.316791 0.213616 Consensus sequence: HDHHTTTTATTKKHDD Alignment: HDHHTTTTATTKKHDD --WHTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00037 Zfp105_primary Reverse Complement Reverse Complement Forward 3 12 0.012956 Species: Mus musculus Original motif 0.363104 0.182807 0.145232 0.308856 0.419707 0.133742 0.222546 0.224005 0.164481 0.418263 0.052397 0.364858 0.715575 0.117639 0.064914 0.101872 0.883836 0.026985 0.032584 0.056596 0.558797 0.151280 0.033120 0.256803 0.267037 0.403488 0.026746 0.302729 0.939762 0.013627 0.034579 0.012032 0.897072 0.009878 0.035642 0.057408 0.305904 0.516040 0.055311 0.122746 0.880940 0.027958 0.048350 0.042752 0.710082 0.052464 0.040250 0.197204 0.246712 0.125155 0.318627 0.309506 0.429749 0.181755 0.176892 0.211603 0.339643 0.097216 0.355250 0.207891 Consensus sequence: HDYAAAHAAMAADHD Reverse complement motif 0.339643 0.355250 0.097216 0.207891 0.211603 0.181755 0.176892 0.429749 0.246712 0.318627 0.125155 0.309506 0.197204 0.052464 0.040250 0.710082 0.042752 0.027958 0.048350 0.880940 0.305904 0.055311 0.516040 0.122746 0.057408 0.009878 0.035642 0.897072 0.012032 0.013627 0.034579 0.939762 0.267037 0.026746 0.403488 0.302729 0.256803 0.151280 0.033120 0.558797 0.056596 0.026985 0.032584 0.883836 0.101872 0.117639 0.064914 0.715575 0.164481 0.052397 0.418263 0.364858 0.224005 0.133742 0.222546 0.419707 0.308856 0.182807 0.145232 0.363104 Consensus sequence: HHHTTRTTDTTTKDH Alignment: HHHTTRTTDTTTKDH --WHTATTATTTDH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00064 Sox18_primary Original Motif Reverse Complement Forward 4 12 0.013014 Species: Mus musculus Original motif 0.171923 0.236711 0.194037 0.397329 0.365499 0.126080 0.115062 0.393358 0.154238 0.330371 0.213820 0.301571 0.411934 0.286682 0.023094 0.278290 0.925907 0.006960 0.008324 0.058809 0.020208 0.014069 0.008364 0.957359 0.019255 0.004244 0.009748 0.966753 0.109433 0.025833 0.844558 0.020176 0.053352 0.006877 0.015312 0.924459 0.107006 0.077857 0.051283 0.763854 0.208320 0.284484 0.245065 0.262131 0.230912 0.143849 0.075255 0.549985 0.374917 0.276156 0.167160 0.181766 0.477406 0.100035 0.175575 0.246983 0.375092 0.278435 0.139104 0.207369 0.352086 0.238643 0.148396 0.260874 Consensus sequence: BWBHATTGTTBTHDHH Reverse complement motif 0.260874 0.238643 0.148396 0.352086 0.207369 0.278435 0.139104 0.375092 0.246983 0.100035 0.175575 0.477406 0.181766 0.276156 0.167160 0.374917 0.549985 0.143849 0.075255 0.230912 0.208320 0.245065 0.284484 0.262131 0.763854 0.077857 0.051283 0.107006 0.924459 0.006877 0.015312 0.053352 0.109433 0.844558 0.025833 0.020176 0.966753 0.004244 0.009748 0.019255 0.957359 0.014069 0.008364 0.020208 0.058809 0.006960 0.008324 0.925907 0.278290 0.286682 0.023094 0.411934 0.154238 0.213820 0.330371 0.301571 0.393358 0.126080 0.115062 0.365499 0.397329 0.236711 0.194037 0.171923 Consensus sequence: HHDHABAACAATHBWV Alignment: HHDHABAACAATHBWV ---HDAAATAATAHW- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Reverse Complement Reverse Complement Backward 4 12 0.013103 Species: Mus musculus Original motif 0.193358 0.228955 0.160692 0.416995 0.611960 0.068099 0.048494 0.271446 0.459770 0.057385 0.307824 0.175021 0.226103 0.127408 0.101076 0.545413 0.241226 0.228640 0.067165 0.462969 0.621421 0.137382 0.078412 0.162785 0.737972 0.031899 0.051833 0.178295 0.110802 0.098497 0.073668 0.717033 0.129567 0.110629 0.036048 0.723756 0.729342 0.031636 0.088480 0.150541 0.540257 0.104927 0.048065 0.306750 0.195987 0.148698 0.098709 0.556606 0.587529 0.072583 0.170635 0.169252 0.497416 0.161804 0.219409 0.121371 0.278831 0.114362 0.139037 0.467771 0.297462 0.189119 0.187754 0.325665 0.397268 0.140582 0.287428 0.174722 Consensus sequence: HARTHAATTAWTAVDHD Reverse complement motif 0.174722 0.140582 0.287428 0.397268 0.325665 0.189119 0.187754 0.297462 0.467771 0.114362 0.139037 0.278831 0.121371 0.161804 0.219409 0.497416 0.169252 0.072583 0.170635 0.587529 0.556606 0.148698 0.098709 0.195987 0.306750 0.104927 0.048065 0.540257 0.150541 0.031636 0.088480 0.729342 0.723756 0.110629 0.036048 0.129567 0.717033 0.098497 0.073668 0.110802 0.178295 0.031899 0.051833 0.737972 0.162785 0.137382 0.078412 0.621421 0.462969 0.228640 0.067165 0.241226 0.545413 0.127408 0.101076 0.226103 0.175021 0.057385 0.307824 0.459770 0.271446 0.068099 0.048494 0.611960 0.416995 0.228955 0.160692 0.193358 Consensus sequence: DHDBTAWTAATTHAKTH Alignment: DHDBTAWTAATTHAKTH --WHTATTATTTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00024 Glis2_secondary Reverse Complement Original Motif Forward 1 12 0.014043 Species: Mus musculus Original motif 0.365755 0.225782 0.091871 0.316593 0.343299 0.160876 0.206971 0.288854 0.060679 0.072038 0.092308 0.774975 0.713491 0.063350 0.137042 0.086116 0.174542 0.088095 0.094744 0.642620 0.097026 0.085027 0.139475 0.678472 0.710084 0.072723 0.128873 0.088320 0.369669 0.182092 0.127500 0.320739 0.181162 0.145491 0.093689 0.579659 0.710308 0.067407 0.054648 0.167638 0.679812 0.058228 0.089773 0.172186 0.705700 0.167070 0.033893 0.093337 0.217869 0.162331 0.460989 0.158811 0.412095 0.213865 0.220174 0.153866 Consensus sequence: HDTATTAHTAAAVV Reverse complement motif 0.153866 0.213865 0.220174 0.412095 0.217869 0.460989 0.162331 0.158811 0.093337 0.167070 0.033893 0.705700 0.172186 0.058228 0.089773 0.679812 0.167638 0.067407 0.054648 0.710308 0.579659 0.145491 0.093689 0.181162 0.320739 0.182092 0.127500 0.369669 0.088320 0.072723 0.128873 0.710084 0.678472 0.085027 0.139475 0.097026 0.642620 0.088095 0.094744 0.174542 0.086116 0.063350 0.137042 0.713491 0.774975 0.072038 0.092308 0.060679 0.288854 0.160876 0.206971 0.343299 0.316593 0.225782 0.091871 0.365755 Consensus sequence: BVTTTAHTAATADH Alignment: BVTTTAHTAATADH WHTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00075 Sox15_primary Reverse Complement Reverse Complement Backward 3 12 0.014353 Species: Mus musculus Original motif 0.287334 0.139055 0.124297 0.449314 0.278683 0.214056 0.278266 0.228994 0.196938 0.172103 0.339663 0.291296 0.343773 0.089222 0.198442 0.368564 0.217683 0.069371 0.485495 0.227451 0.795638 0.049144 0.086842 0.068377 0.932914 0.008887 0.006817 0.051381 0.018504 0.893128 0.012624 0.075744 0.960471 0.008180 0.009943 0.021405 0.966816 0.008885 0.008787 0.015512 0.086103 0.016953 0.005969 0.890975 0.475989 0.013028 0.097844 0.413139 0.304890 0.097952 0.464158 0.133000 0.458453 0.118585 0.307695 0.115267 0.205225 0.241082 0.224896 0.328798 0.328081 0.178970 0.116466 0.376483 0.188001 0.185031 0.192398 0.434571 Consensus sequence: HDDDDAACAATWRRBHD Reverse complement motif 0.434571 0.185031 0.192398 0.188001 0.376483 0.178970 0.116466 0.328081 0.328798 0.241082 0.224896 0.205225 0.115267 0.118585 0.307695 0.458453 0.304890 0.464158 0.097952 0.133000 0.413139 0.013028 0.097844 0.475989 0.890975 0.016953 0.005969 0.086103 0.015512 0.008885 0.008787 0.966816 0.021405 0.008180 0.009943 0.960471 0.018504 0.012624 0.893128 0.075744 0.051381 0.008887 0.006817 0.932914 0.068377 0.049144 0.086842 0.795638 0.217683 0.485495 0.069371 0.227451 0.368564 0.089222 0.198442 0.343773 0.196938 0.339663 0.172103 0.291296 0.228994 0.214056 0.278266 0.278683 0.449314 0.139055 0.124297 0.287334 Consensus sequence: DHVKMWATTGTTHDHDH Alignment: DHVKMWATTGTTHDHDH ---WHTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00096 Sox13_primary Original Motif Original Motif Forward 3 12 0.014607 Species: Mus musculus Original motif 0.269275 0.121320 0.165706 0.443700 0.188801 0.239798 0.175798 0.395603 0.368195 0.140376 0.162749 0.328680 0.497992 0.105708 0.282795 0.113505 0.130964 0.090292 0.620010 0.158734 0.825318 0.023531 0.125342 0.025809 0.959293 0.007648 0.010682 0.022377 0.019733 0.898543 0.014756 0.066968 0.943830 0.005894 0.014484 0.035792 0.949658 0.010125 0.029732 0.010485 0.038214 0.025063 0.006015 0.930708 0.465769 0.016866 0.079467 0.437898 0.416082 0.086340 0.115778 0.381801 0.356556 0.103268 0.179331 0.360845 0.206830 0.204618 0.120034 0.468518 0.302958 0.164260 0.071574 0.461209 Consensus sequence: DHDRGAACAATWWDHW Reverse complement motif 0.461209 0.164260 0.071574 0.302958 0.468518 0.204618 0.120034 0.206830 0.360845 0.103268 0.179331 0.356556 0.381801 0.086340 0.115778 0.416082 0.437898 0.016866 0.079467 0.465769 0.930708 0.025063 0.006015 0.038214 0.010485 0.010125 0.029732 0.949658 0.035792 0.005894 0.014484 0.943830 0.019733 0.014756 0.898543 0.066968 0.022377 0.007648 0.010682 0.959293 0.025809 0.023531 0.125342 0.825318 0.130964 0.620010 0.090292 0.158734 0.113505 0.105708 0.282795 0.497992 0.328680 0.140376 0.162749 0.368195 0.395603 0.239798 0.175798 0.188801 0.443700 0.121320 0.165706 0.269275 Consensus sequence: WHDWWATTGTTCKDHD Alignment: DHDRGAACAATWWDHW --HDAAATAATAHW-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 16 Motif name: kcACCTGCAgc Original motif 0.153846 0.230769 0.307692 0.307692 0.153846 0.538462 0.153846 0.153846 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.153846 0.230769 0.461538 0.153846 0.153846 0.615385 0.153846 0.076923 Consensus sequence: BCACCTGCABC Reserve complement motif 0.153846 0.153846 0.615385 0.076923 0.153846 0.461538 0.230769 0.153846 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.153846 0.153846 0.538462 0.153846 0.153846 0.307692 0.230769 0.307692 Consensus sequence: GBTGCAGGTGB ************************************************************************ Best Matches for Motif ID 16 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00070 Gcm1_primary Reverse Complement Reverse Complement Forward 4 11 0.000000 Species: Mus musculus Original motif 0.251681 0.208273 0.178525 0.361520 0.323865 0.334303 0.205542 0.136289 0.308084 0.277004 0.326203 0.088709 0.280609 0.171416 0.168918 0.379057 0.734441 0.031257 0.211473 0.022829 0.006187 0.990281 0.001052 0.002480 0.005819 0.990856 0.001498 0.001826 0.043838 0.936502 0.001550 0.018110 0.022607 0.058037 0.901005 0.018350 0.000424 0.787011 0.026547 0.186017 0.980774 0.002884 0.011288 0.005054 0.009100 0.110310 0.067399 0.813192 0.247510 0.310539 0.250093 0.191858 0.279511 0.211998 0.250717 0.257774 0.264451 0.270002 0.142606 0.322941 0.227607 0.212076 0.267214 0.293102 Consensus sequence: HVVHACCCGCATVDHD Reverse complement motif 0.293102 0.212076 0.267214 0.227607 0.322941 0.270002 0.142606 0.264451 0.257774 0.211998 0.250717 0.279511 0.247510 0.250093 0.310539 0.191858 0.813192 0.110310 0.067399 0.009100 0.005054 0.002884 0.011288 0.980774 0.000424 0.026547 0.787011 0.186017 0.022607 0.901005 0.058037 0.018350 0.043838 0.001550 0.936502 0.018110 0.005819 0.001498 0.990856 0.001826 0.006187 0.001052 0.990281 0.002480 0.022829 0.031257 0.211473 0.734441 0.379057 0.171416 0.168918 0.280609 0.308084 0.326203 0.277004 0.088709 0.323865 0.205542 0.334303 0.136289 0.361520 0.208273 0.178525 0.251681 Consensus sequence: DHDVATGCGGGTHVVH Alignment: DHDVATGCGGGTHVVH ---GBTGCAGGTGB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Reverse Complement Reverse Complement Backward 4 11 0.000504 Species: Mus musculus Original motif 0.401190 0.144405 0.268531 0.185874 0.430224 0.168519 0.221247 0.180011 0.172575 0.268499 0.274136 0.284789 0.150971 0.297110 0.290868 0.261051 0.133421 0.282842 0.434718 0.149019 0.042798 0.941105 0.001785 0.014312 0.890788 0.002551 0.103316 0.003345 0.001887 0.951368 0.043722 0.003023 0.011633 0.002218 0.002269 0.983880 0.003597 0.003728 0.984819 0.007856 0.002946 0.903520 0.072457 0.021077 0.908487 0.057072 0.018256 0.016185 0.076237 0.329864 0.228896 0.365003 0.144926 0.162981 0.177370 0.514722 0.124970 0.327876 0.295814 0.251341 0.144592 0.313887 0.301912 0.239609 0.108463 0.241747 0.350296 0.299494 Consensus sequence: DDBBBCACTGCABTBBB Reverse complement motif 0.108463 0.350296 0.241747 0.299494 0.144592 0.301912 0.313887 0.239609 0.124970 0.295814 0.327876 0.251341 0.514722 0.162981 0.177370 0.144926 0.365003 0.329864 0.228896 0.076237 0.016185 0.057072 0.018256 0.908487 0.002946 0.072457 0.903520 0.021077 0.003597 0.984819 0.003728 0.007856 0.983880 0.002218 0.002269 0.011633 0.001887 0.043722 0.951368 0.003023 0.003345 0.002551 0.103316 0.890788 0.042798 0.001785 0.941105 0.014312 0.133421 0.434718 0.282842 0.149019 0.150971 0.290868 0.297110 0.261051 0.284789 0.268499 0.274136 0.172575 0.180011 0.168519 0.221247 0.430224 0.185874 0.144405 0.268531 0.401190 Consensus sequence: BBBAVTGCAGTGBBVDD Alignment: BBBAVTGCAGTGBBVDD ---GBTGCAGGTGB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00046 Tcfe2a_primary Original Motif Reverse Complement Forward 6 11 0.000557 Species: Mus musculus Original motif 0.306209 0.232705 0.244475 0.216611 0.165668 0.171480 0.222584 0.440269 0.213008 0.429038 0.156385 0.201569 0.283226 0.329518 0.160795 0.226461 0.439156 0.283517 0.251270 0.026056 0.014994 0.980987 0.000714 0.003304 0.975741 0.020182 0.002909 0.001168 0.000926 0.191353 0.801648 0.006073 0.015382 0.090853 0.893043 0.000721 0.001549 0.005912 0.001713 0.990826 0.004000 0.000857 0.989667 0.005475 0.016957 0.663726 0.148127 0.171190 0.299047 0.091156 0.448649 0.161148 0.354701 0.214677 0.236757 0.193865 0.399446 0.174508 0.200036 0.226009 0.303545 0.277435 0.200094 0.218926 0.380242 0.148876 0.163367 0.307514 Consensus sequence: VBHHVCAGGTGCDVDHD Reverse complement motif 0.307514 0.148876 0.163367 0.380242 0.218926 0.277435 0.200094 0.303545 0.226009 0.174508 0.200036 0.399446 0.193865 0.214677 0.236757 0.354701 0.299047 0.448649 0.091156 0.161148 0.016957 0.148127 0.663726 0.171190 0.004000 0.989667 0.000857 0.005475 0.990826 0.005912 0.001713 0.001549 0.015382 0.893043 0.090853 0.000721 0.000926 0.801648 0.191353 0.006073 0.001168 0.020182 0.002909 0.975741 0.014994 0.000714 0.980987 0.003304 0.026056 0.283517 0.251270 0.439156 0.283226 0.160795 0.329518 0.226461 0.213008 0.156385 0.429038 0.201569 0.440269 0.171480 0.222584 0.165668 0.216611 0.232705 0.244475 0.306209 Consensus sequence: DHDBHGCACCTGBDDVB Alignment: DHDBHGCACCTGBDDVB -----BCACCTGCABC- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00099 Ascl2_primary Original Motif Original Motif Backward 3 11 0.008427 Species: Mus musculus Original motif 0.168852 0.325948 0.188604 0.316596 0.150343 0.193286 0.241301 0.415069 0.091518 0.482905 0.122928 0.302648 0.472493 0.198776 0.225796 0.102935 0.294513 0.179919 0.447250 0.078318 0.014660 0.972080 0.005591 0.007668 0.954848 0.008107 0.008474 0.028571 0.006076 0.178912 0.760021 0.054991 0.052082 0.817415 0.124797 0.005707 0.019342 0.010406 0.008905 0.961347 0.005455 0.008073 0.977684 0.008788 0.042946 0.715551 0.087020 0.154483 0.116888 0.241739 0.170073 0.471300 0.315931 0.324343 0.291451 0.068274 0.199164 0.366921 0.163690 0.270226 0.218561 0.211076 0.187732 0.382631 0.145317 0.139808 0.389262 0.325614 Consensus sequence: BBYVVCAGCTGCBVHHD Reverse complement motif 0.145317 0.389262 0.139808 0.325614 0.382631 0.211076 0.187732 0.218561 0.199164 0.163690 0.366921 0.270226 0.315931 0.291451 0.324343 0.068274 0.471300 0.241739 0.170073 0.116888 0.042946 0.087020 0.715551 0.154483 0.005455 0.977684 0.008073 0.008788 0.961347 0.010406 0.008905 0.019342 0.052082 0.124797 0.817415 0.005707 0.006076 0.760021 0.178912 0.054991 0.028571 0.008107 0.008474 0.954848 0.014660 0.005591 0.972080 0.007668 0.294513 0.447250 0.179919 0.078318 0.102935 0.198776 0.225796 0.472493 0.091518 0.122928 0.482905 0.302648 0.415069 0.193286 0.241301 0.150343 0.168852 0.188604 0.325948 0.316596 Consensus sequence: HHDVVGCAGCTGVBKVB Alignment: BBYVVCAGCTGCBVHHD ----BCACCTGCABC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00420 Elk3 Original Motif Original Motif Backward 5 11 0.011173 Species: Mus musculus Original motif 0.418636 0.167911 0.195103 0.218350 0.246759 0.378552 0.216618 0.158071 0.170474 0.198507 0.329732 0.301287 0.153827 0.338948 0.166531 0.340694 0.680337 0.052303 0.181512 0.085848 0.019707 0.916463 0.055898 0.007932 0.087081 0.910099 0.002387 0.000433 0.007321 0.001499 0.990022 0.001157 0.002298 0.001866 0.993126 0.002710 0.982141 0.000524 0.001717 0.015617 0.903999 0.006376 0.001427 0.088198 0.079522 0.183730 0.730171 0.006577 0.009983 0.341624 0.056464 0.591929 0.329404 0.110758 0.301227 0.258611 0.263984 0.375830 0.189175 0.171012 0.415962 0.256170 0.174350 0.153518 0.208242 0.316512 0.281982 0.193264 Consensus sequence: DVBBACCGGAAGYDVVV Reverse complement motif 0.208242 0.281982 0.316512 0.193264 0.153518 0.256170 0.174350 0.415962 0.263984 0.189175 0.375830 0.171012 0.258611 0.110758 0.301227 0.329404 0.591929 0.341624 0.056464 0.009983 0.079522 0.730171 0.183730 0.006577 0.088198 0.006376 0.001427 0.903999 0.015617 0.000524 0.001717 0.982141 0.002298 0.993126 0.001866 0.002710 0.007321 0.990022 0.001499 0.001157 0.087081 0.002387 0.910099 0.000433 0.019707 0.055898 0.916463 0.007932 0.085848 0.052303 0.181512 0.680337 0.340694 0.338948 0.166531 0.153827 0.170474 0.329732 0.198507 0.301287 0.246759 0.216618 0.378552 0.158071 0.218350 0.167911 0.195103 0.418636 Consensus sequence: VBVDMCTTCCGGTVBVD Alignment: DVBBACCGGAAGYDVVV --BCACCTGCABC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00050 Bhlhb2_secondary Original Motif Reverse Complement Forward 9 11 0.012267 Species: Mus musculus Original motif 0.120938 0.344851 0.124072 0.410138 0.220931 0.169844 0.422396 0.186829 0.127752 0.260812 0.103811 0.507625 0.140641 0.405473 0.287668 0.166218 0.296957 0.155579 0.301094 0.246370 0.219647 0.287193 0.154072 0.339087 0.049294 0.026059 0.121789 0.802859 0.520042 0.289284 0.173423 0.017251 0.049190 0.943472 0.004308 0.003030 0.902609 0.006767 0.074770 0.015854 0.003221 0.971329 0.005512 0.019937 0.019937 0.005512 0.971329 0.003221 0.015854 0.074770 0.006767 0.902609 0.003030 0.004308 0.943472 0.049190 0.003497 0.088920 0.685942 0.221641 0.802859 0.121789 0.026059 0.049294 0.334544 0.155170 0.275193 0.235092 0.275957 0.132104 0.454982 0.136957 0.134097 0.254352 0.422940 0.188611 0.396163 0.432784 0.051281 0.119772 0.276474 0.115627 0.419844 0.188056 0.160759 0.088061 0.649863 0.101318 0.203314 0.166595 0.106821 0.523270 Consensus sequence: YDYBDHTMCACGTGGADDBMDGT Reverse complement motif 0.523270 0.166595 0.106821 0.203314 0.160759 0.649863 0.088061 0.101318 0.276474 0.419844 0.115627 0.188056 0.396163 0.051281 0.432784 0.119772 0.134097 0.422940 0.254352 0.188611 0.275957 0.454982 0.132104 0.136957 0.235092 0.155170 0.275193 0.334544 0.049294 0.121789 0.026059 0.802859 0.003497 0.685942 0.088920 0.221641 0.003030 0.943472 0.004308 0.049190 0.902609 0.074770 0.006767 0.015854 0.019937 0.971329 0.005512 0.003221 0.003221 0.005512 0.971329 0.019937 0.015854 0.006767 0.074770 0.902609 0.049190 0.004308 0.943472 0.003030 0.017251 0.289284 0.173423 0.520042 0.802859 0.026059 0.121789 0.049294 0.339087 0.287193 0.154072 0.219647 0.296957 0.301094 0.155579 0.246370 0.140641 0.287668 0.405473 0.166218 0.507625 0.260812 0.103811 0.127752 0.220931 0.422396 0.169844 0.186829 0.410138 0.344851 0.124072 0.120938 Consensus sequence: ACHRBHDTCCACGTGYAHHBMHM Alignment: ACHRBHDTCCACGTGYAHHBMHM --------BCACCTGCABC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00092 Myb_secondary Original Motif Original Motif Backward 3 11 0.015733 Species: Mus musculus Original motif 0.205499 0.277575 0.259453 0.257473 0.195121 0.188791 0.391777 0.224311 0.514704 0.191753 0.122477 0.171066 0.063609 0.633099 0.088173 0.215120 0.125737 0.620566 0.012681 0.241016 0.985342 0.002529 0.005984 0.006145 0.986092 0.007796 0.003341 0.002771 0.004947 0.985867 0.004474 0.004712 0.023351 0.140013 0.015937 0.820699 0.020749 0.006802 0.969227 0.003223 0.150942 0.638406 0.020813 0.189838 0.030781 0.907267 0.014632 0.047320 0.502947 0.055027 0.326515 0.115511 0.204781 0.281209 0.218985 0.295024 0.191705 0.247567 0.338912 0.221816 0.224641 0.309544 0.218985 0.246831 Consensus sequence: BDACCAACTGCCRBBH Reverse complement motif 0.224641 0.218985 0.309544 0.246831 0.191705 0.338912 0.247567 0.221816 0.295024 0.281209 0.218985 0.204781 0.115511 0.055027 0.326515 0.502947 0.030781 0.014632 0.907267 0.047320 0.150942 0.020813 0.638406 0.189838 0.020749 0.969227 0.006802 0.003223 0.820699 0.140013 0.015937 0.023351 0.004947 0.004474 0.985867 0.004712 0.002771 0.007796 0.003341 0.986092 0.006145 0.002529 0.005984 0.985342 0.125737 0.012681 0.620566 0.241016 0.063609 0.088173 0.633099 0.215120 0.171066 0.191753 0.122477 0.514704 0.195121 0.391777 0.188791 0.224311 0.205499 0.259453 0.277575 0.257473 Consensus sequence: DBVKGGCAGTTGGTHB Alignment: BDACCAACTGCCRBBH ---BCACCTGCABC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00236 Irx2 Reverse Complement Reverse Complement Backward 4 11 0.016314 Species: Mus musculus Original motif 0.394106 0.081399 0.100827 0.423668 0.466343 0.126236 0.130788 0.276633 0.319347 0.127772 0.257087 0.295794 0.406891 0.139766 0.252855 0.200488 0.219982 0.007245 0.029337 0.743436 0.947280 0.014984 0.012651 0.025086 0.003955 0.974386 0.007466 0.014192 0.956452 0.001229 0.011361 0.030959 0.030959 0.011361 0.001229 0.956452 0.014192 0.007466 0.974386 0.003955 0.025086 0.012651 0.014984 0.947280 0.743436 0.029337 0.007245 0.219982 0.404816 0.174236 0.206626 0.214322 0.295979 0.194049 0.285864 0.224108 0.399608 0.106063 0.123706 0.370623 0.176973 0.196462 0.269004 0.357560 0.339978 0.107593 0.083682 0.468747 Consensus sequence: WDDDTACATGTADDWBW Reverse complement motif 0.468747 0.107593 0.083682 0.339978 0.357560 0.196462 0.269004 0.176973 0.370623 0.106063 0.123706 0.399608 0.224108 0.194049 0.285864 0.295979 0.214322 0.174236 0.206626 0.404816 0.219982 0.029337 0.007245 0.743436 0.947280 0.012651 0.014984 0.025086 0.014192 0.974386 0.007466 0.003955 0.956452 0.011361 0.001229 0.030959 0.030959 0.001229 0.011361 0.956452 0.003955 0.007466 0.974386 0.014192 0.025086 0.014984 0.012651 0.947280 0.743436 0.007245 0.029337 0.219982 0.200488 0.139766 0.252855 0.406891 0.295794 0.127772 0.257087 0.319347 0.276633 0.126236 0.130788 0.466343 0.423668 0.081399 0.100827 0.394106 Consensus sequence: WVWDDTACATGTADDDW Alignment: WVWDDTACATGTADDDW ---GBTGCAGGTGB--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00223 Irx3_0920.1 Original Motif Reverse Complement Forward 5 11 0.016525 Species: Mus musculus Original motif 0.369314 0.086226 0.205101 0.339359 0.332302 0.160101 0.284255 0.223343 0.291107 0.190306 0.229518 0.289068 0.295366 0.218346 0.264868 0.221420 0.224029 0.007037 0.047157 0.721777 0.935123 0.014036 0.014073 0.036768 0.004474 0.977496 0.005620 0.012411 0.924256 0.001181 0.015903 0.058661 0.058661 0.015903 0.001181 0.924256 0.012411 0.005620 0.977496 0.004474 0.036768 0.014073 0.014036 0.935123 0.721777 0.047157 0.007037 0.224029 0.449320 0.226936 0.166094 0.157650 0.313283 0.070145 0.179424 0.437148 0.522855 0.074913 0.105873 0.296358 0.185897 0.387406 0.129138 0.297559 0.276853 0.127952 0.189255 0.405940 Consensus sequence: DDDDTACATGTAVWWHD Reverse complement motif 0.405940 0.127952 0.189255 0.276853 0.185897 0.129138 0.387406 0.297559 0.296358 0.074913 0.105873 0.522855 0.437148 0.070145 0.179424 0.313283 0.157650 0.226936 0.166094 0.449320 0.224029 0.047157 0.007037 0.721777 0.935123 0.014073 0.014036 0.036768 0.012411 0.977496 0.005620 0.004474 0.924256 0.015903 0.001181 0.058661 0.058661 0.001181 0.015903 0.924256 0.004474 0.005620 0.977496 0.012411 0.036768 0.014036 0.014073 0.935123 0.721777 0.007037 0.047157 0.224029 0.221420 0.218346 0.264868 0.295366 0.289068 0.190306 0.229518 0.291107 0.223343 0.160101 0.284255 0.332302 0.339359 0.086226 0.205101 0.369314 Consensus sequence: DDWWBTACATGTADDDD Alignment: DDWWBTACATGTADDDD ----BCACCTGCABC-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Original Motif Reverse Complement Forward 1 11 0.016918 Species: Mus musculus Original motif 0.201522 0.336845 0.183740 0.277892 0.238705 0.354378 0.165332 0.241585 0.350858 0.031427 0.308482 0.309233 0.104423 0.870794 0.018676 0.006107 0.313246 0.259944 0.277570 0.149241 0.003590 0.973377 0.002520 0.020513 0.899716 0.025489 0.015458 0.059336 0.049224 0.006415 0.938214 0.006147 0.002021 0.859631 0.007903 0.130445 0.772818 0.002659 0.187334 0.037190 0.008456 0.015170 0.594695 0.381679 0.004118 0.009188 0.961506 0.025188 0.367151 0.230955 0.204475 0.197419 0.267508 0.193660 0.430070 0.108762 0.444449 0.099127 0.212182 0.244241 Consensus sequence: HHDCVCAGCAKGVVD Reverse complement motif 0.244241 0.099127 0.212182 0.444449 0.267508 0.430070 0.193660 0.108762 0.197419 0.230955 0.204475 0.367151 0.004118 0.961506 0.009188 0.025188 0.008456 0.594695 0.015170 0.381679 0.037190 0.002659 0.187334 0.772818 0.002021 0.007903 0.859631 0.130445 0.049224 0.938214 0.006415 0.006147 0.059336 0.025489 0.015458 0.899716 0.003590 0.002520 0.973377 0.020513 0.149241 0.259944 0.277570 0.313246 0.104423 0.018676 0.870794 0.006107 0.309233 0.031427 0.308482 0.350858 0.238705 0.165332 0.354378 0.241585 0.201522 0.183740 0.336845 0.277892 Consensus sequence: DVBCYTGCTGBGDDD Alignment: HHDCVCAGCAKGVVD BCACCTGCABC---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 17 Motif name: wwAAATAATAtw Original motif 0.370370 0.166667 0.129630 0.333333 0.333333 0.166667 0.203704 0.296296 0.740741 0.018519 0.055556 0.185185 0.740741 0.055556 0.037037 0.166667 0.888889 0.018519 0.018519 0.074074 0.037037 0.000000 0.000000 0.962963 0.833333 0.037037 0.018519 0.111111 0.796296 0.018519 0.037037 0.148148 0.074074 0.055556 0.018519 0.851852 0.925926 0.055556 0.018519 0.000000 0.240741 0.166667 0.166667 0.425926 0.370370 0.129630 0.148148 0.351852 Consensus sequence: HDAAATAATADD Reserve complement motif 0.351852 0.129630 0.148148 0.370370 0.425926 0.166667 0.166667 0.240741 0.000000 0.055556 0.018519 0.925926 0.851852 0.055556 0.018519 0.074074 0.148148 0.018519 0.037037 0.796296 0.111111 0.037037 0.018519 0.833333 0.962963 0.000000 0.000000 0.037037 0.074074 0.018519 0.018519 0.888889 0.166667 0.055556 0.037037 0.740741 0.185185 0.018519 0.055556 0.740741 0.296296 0.166667 0.203704 0.333333 0.333333 0.166667 0.129630 0.370370 Consensus sequence: DDTATTATTTDH ************************************************************************ Best Matches for Motif ID 17 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00244 Tlx2 Reverse Complement Reverse Complement Backward 4 12 0.005767 Species: Mus musculus Original motif 0.105929 0.200768 0.276304 0.416999 0.605737 0.082484 0.045449 0.266331 0.616140 0.070870 0.219578 0.093411 0.207168 0.101768 0.138909 0.552155 0.205588 0.314073 0.063564 0.416776 0.753104 0.060249 0.064598 0.122049 0.785626 0.028841 0.041793 0.143739 0.035001 0.038504 0.018619 0.907876 0.039875 0.038526 0.009504 0.912095 0.920557 0.010057 0.045031 0.024356 0.806507 0.031077 0.030857 0.131559 0.170184 0.056552 0.043413 0.729851 0.630114 0.051409 0.080078 0.238398 0.554265 0.093528 0.223411 0.128796 0.183854 0.390999 0.093847 0.331300 0.289988 0.101149 0.103803 0.505061 0.400594 0.061089 0.136478 0.401839 Consensus sequence: BAATHAATTAATAAHWW Reverse complement motif 0.401839 0.061089 0.136478 0.400594 0.505061 0.101149 0.103803 0.289988 0.183854 0.093847 0.390999 0.331300 0.128796 0.093528 0.223411 0.554265 0.238398 0.051409 0.080078 0.630114 0.729851 0.056552 0.043413 0.170184 0.131559 0.031077 0.030857 0.806507 0.024356 0.010057 0.045031 0.920557 0.912095 0.038526 0.009504 0.039875 0.907876 0.038504 0.018619 0.035001 0.143739 0.028841 0.041793 0.785626 0.122049 0.060249 0.064598 0.753104 0.416776 0.314073 0.063564 0.205588 0.552155 0.101768 0.138909 0.207168 0.093411 0.070870 0.219578 0.616140 0.266331 0.082484 0.045449 0.605737 0.416999 0.200768 0.276304 0.105929 Consensus sequence: WWDTTATTAATTHATTV Alignment: WWDTTATTAATTHATTV --DDTATTATTTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00121 Hoxd10 Reverse Complement Reverse Complement Forward 4 12 0.006736 Species: Mus musculus Original motif 0.405345 0.293266 0.220907 0.080482 0.398063 0.099034 0.333525 0.169378 0.049753 0.190411 0.336789 0.423048 0.243698 0.226261 0.324346 0.205696 0.030873 0.549741 0.008321 0.411065 0.714225 0.228092 0.020960 0.036723 0.833992 0.010944 0.021918 0.133146 0.008898 0.026169 0.008341 0.956591 0.811684 0.004889 0.004751 0.178676 0.952107 0.004322 0.004587 0.038984 0.925365 0.008360 0.006811 0.059464 0.850659 0.058250 0.065237 0.025855 0.193369 0.242985 0.049515 0.514131 0.266774 0.080601 0.239781 0.412844 0.335522 0.125500 0.188170 0.350809 0.407171 0.120540 0.187300 0.284989 0.281181 0.242348 0.160247 0.316224 Consensus sequence: VDKVYAATAAAATDDDH Reverse complement motif 0.316224 0.242348 0.160247 0.281181 0.284989 0.120540 0.187300 0.407171 0.350809 0.125500 0.188170 0.335522 0.412844 0.080601 0.239781 0.266774 0.514131 0.242985 0.049515 0.193369 0.025855 0.058250 0.065237 0.850659 0.059464 0.008360 0.006811 0.925365 0.038984 0.004322 0.004587 0.952107 0.178676 0.004889 0.004751 0.811684 0.956591 0.026169 0.008341 0.008898 0.133146 0.010944 0.021918 0.833992 0.036723 0.228092 0.020960 0.714225 0.030873 0.008321 0.549741 0.411065 0.243698 0.324346 0.226261 0.205696 0.423048 0.190411 0.336789 0.049753 0.169378 0.099034 0.333525 0.398063 0.080482 0.293266 0.220907 0.405345 Consensus sequence: HDDDATTTTATTKVRDB Alignment: HDDDATTTTATTKVRDB ---DDTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00180 Hoxd13 Reverse Complement Reverse Complement Backward 3 12 0.006852 Species: Mus musculus Original motif 0.279189 0.316791 0.190404 0.213616 0.297705 0.175638 0.191020 0.335637 0.333485 0.203858 0.174034 0.288623 0.046444 0.540349 0.083237 0.329969 0.016780 0.648667 0.003870 0.330682 0.679959 0.116873 0.002745 0.200422 0.936496 0.002013 0.026876 0.034615 0.004741 0.008734 0.003861 0.982665 0.904624 0.000869 0.005345 0.089162 0.967883 0.002295 0.001003 0.028819 0.980087 0.004768 0.002887 0.012258 0.898523 0.041633 0.022776 0.037069 0.246903 0.292446 0.069240 0.391411 0.192528 0.300908 0.105655 0.400908 0.247610 0.343317 0.190760 0.218313 0.246702 0.253595 0.176298 0.323404 Consensus sequence: HDHYYAATAAAAHHHH Reverse complement motif 0.323404 0.253595 0.176298 0.246702 0.247610 0.190760 0.343317 0.218313 0.400908 0.300908 0.105655 0.192528 0.391411 0.292446 0.069240 0.246903 0.037069 0.041633 0.022776 0.898523 0.012258 0.004768 0.002887 0.980087 0.028819 0.002295 0.001003 0.967883 0.089162 0.000869 0.005345 0.904624 0.982665 0.008734 0.003861 0.004741 0.034615 0.002013 0.026876 0.936496 0.200422 0.116873 0.002745 0.679959 0.016780 0.003870 0.648667 0.330682 0.046444 0.083237 0.540349 0.329969 0.288623 0.203858 0.174034 0.333485 0.335637 0.175638 0.191020 0.297705 0.279189 0.190404 0.316791 0.213616 Consensus sequence: HDHHTTTTATTKKHDD Alignment: HDHHTTTTATTKKHDD --DDTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_secondary Original Motif Original Motif Forward 1 12 0.010833 Species: Mus musculus Original motif 0.337264 0.231140 0.283651 0.147945 0.347118 0.236817 0.257338 0.158726 0.431380 0.126811 0.187071 0.254738 0.585753 0.089587 0.164350 0.160310 0.590169 0.225841 0.088487 0.095503 0.091374 0.098551 0.099596 0.710479 0.790999 0.060485 0.081771 0.066745 0.738945 0.032660 0.093144 0.135251 0.071350 0.719067 0.064337 0.145246 0.820757 0.079130 0.029431 0.070682 0.603611 0.145951 0.097449 0.152989 0.530021 0.143634 0.190469 0.135877 0.231297 0.288099 0.276056 0.204548 0.202920 0.232513 0.431635 0.132933 0.198379 0.292889 0.308599 0.200133 Consensus sequence: VVDAATAACAAAVVB Reverse complement motif 0.198379 0.308599 0.292889 0.200133 0.202920 0.431635 0.232513 0.132933 0.231297 0.276056 0.288099 0.204548 0.135877 0.143634 0.190469 0.530021 0.152989 0.145951 0.097449 0.603611 0.070682 0.079130 0.029431 0.820757 0.071350 0.064337 0.719067 0.145246 0.135251 0.032660 0.093144 0.738945 0.066745 0.060485 0.081771 0.790999 0.710479 0.098551 0.099596 0.091374 0.095503 0.225841 0.088487 0.590169 0.160310 0.089587 0.164350 0.585753 0.254738 0.126811 0.187071 0.431380 0.158726 0.236817 0.257338 0.347118 0.147945 0.231140 0.283651 0.337264 Consensus sequence: BVVTTTGTTATTDBB Alignment: VVDAATAACAAAVVB HDAAATAATADD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00134 Hoxb13 Reverse Complement Reverse Complement Backward 3 12 0.012172 Species: Mus musculus Original motif 0.376100 0.272625 0.202253 0.149021 0.479072 0.116315 0.274952 0.129661 0.297412 0.328646 0.182054 0.191889 0.052067 0.771717 0.088083 0.088133 0.018222 0.666056 0.006952 0.308770 0.755568 0.122362 0.001339 0.120731 0.915413 0.001023 0.052340 0.031225 0.002612 0.028396 0.000695 0.968297 0.831092 0.001851 0.005615 0.161442 0.927869 0.001839 0.001169 0.069123 0.967747 0.009603 0.002871 0.019778 0.843186 0.073812 0.055868 0.027134 0.371084 0.143031 0.086222 0.399662 0.264976 0.212885 0.118960 0.403179 0.215633 0.345186 0.105518 0.333663 0.221910 0.297212 0.329310 0.151568 Consensus sequence: VRHCCAATAAAAWHHV Reverse complement motif 0.221910 0.329310 0.297212 0.151568 0.215633 0.105518 0.345186 0.333663 0.403179 0.212885 0.118960 0.264976 0.399662 0.143031 0.086222 0.371084 0.027134 0.073812 0.055868 0.843186 0.019778 0.009603 0.002871 0.967747 0.069123 0.001839 0.001169 0.927869 0.161442 0.001851 0.005615 0.831092 0.968297 0.028396 0.000695 0.002612 0.031225 0.001023 0.052340 0.915413 0.120731 0.122362 0.001339 0.755568 0.018222 0.006952 0.666056 0.308770 0.052067 0.088083 0.771717 0.088133 0.297412 0.182054 0.328646 0.191889 0.129661 0.116315 0.274952 0.479072 0.149021 0.272625 0.202253 0.376100 Consensus sequence: VDHWTTTTATTGGDKB Alignment: VDHWTTTTATTGGDKB --DDTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00255 Dbx1 Reverse Complement Reverse Complement Backward 4 12 0.013381 Species: Mus musculus Original motif 0.193358 0.228955 0.160692 0.416995 0.611960 0.068099 0.048494 0.271446 0.459770 0.057385 0.307824 0.175021 0.226103 0.127408 0.101076 0.545413 0.241226 0.228640 0.067165 0.462969 0.621421 0.137382 0.078412 0.162785 0.737972 0.031899 0.051833 0.178295 0.110802 0.098497 0.073668 0.717033 0.129567 0.110629 0.036048 0.723756 0.729342 0.031636 0.088480 0.150541 0.540257 0.104927 0.048065 0.306750 0.195987 0.148698 0.098709 0.556606 0.587529 0.072583 0.170635 0.169252 0.497416 0.161804 0.219409 0.121371 0.278831 0.114362 0.139037 0.467771 0.297462 0.189119 0.187754 0.325665 0.397268 0.140582 0.287428 0.174722 Consensus sequence: HARTHAATTAWTAVDHD Reverse complement motif 0.174722 0.140582 0.287428 0.397268 0.325665 0.189119 0.187754 0.297462 0.467771 0.114362 0.139037 0.278831 0.121371 0.161804 0.219409 0.497416 0.169252 0.072583 0.170635 0.587529 0.556606 0.148698 0.098709 0.195987 0.306750 0.104927 0.048065 0.540257 0.150541 0.031636 0.088480 0.729342 0.723756 0.110629 0.036048 0.129567 0.717033 0.098497 0.073668 0.110802 0.178295 0.031899 0.051833 0.737972 0.162785 0.137382 0.078412 0.621421 0.462969 0.228640 0.067165 0.241226 0.545413 0.127408 0.101076 0.226103 0.175021 0.057385 0.307824 0.459770 0.271446 0.068099 0.048494 0.611960 0.416995 0.228955 0.160692 0.193358 Consensus sequence: DHDBTAWTAATTHAKTH Alignment: DHDBTAWTAATTHAKTH --DDTATTATTTDH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Original Motif Backward 7 12 0.014470 Species: Mus musculus Original motif 0.360997 0.300272 0.115555 0.223177 0.309749 0.228429 0.166233 0.295589 0.149419 0.176868 0.240155 0.433558 0.379704 0.095791 0.276373 0.248133 0.394549 0.174184 0.130641 0.300626 0.443749 0.070776 0.211081 0.274393 0.364301 0.074356 0.370406 0.190936 0.791976 0.038475 0.093390 0.076159 0.963721 0.001826 0.002456 0.031997 0.004516 0.954596 0.008092 0.032796 0.981080 0.002062 0.002161 0.014697 0.986185 0.001846 0.006976 0.004992 0.059567 0.003649 0.002189 0.934595 0.495328 0.024257 0.240450 0.239965 0.305027 0.094878 0.526069 0.074025 0.418442 0.196237 0.158323 0.226998 0.336713 0.220452 0.191155 0.251680 0.192296 0.300342 0.169047 0.338315 0.240387 0.144634 0.128513 0.486465 0.290763 0.271259 0.116600 0.321377 0.224825 0.296233 0.229255 0.249687 0.493240 0.171285 0.075148 0.260326 Consensus sequence: HHBDHDDAACAATDRHHHHHBW Reverse complement motif 0.260326 0.171285 0.075148 0.493240 0.224825 0.229255 0.296233 0.249687 0.321377 0.271259 0.116600 0.290763 0.486465 0.144634 0.128513 0.240387 0.338315 0.300342 0.169047 0.192296 0.251680 0.220452 0.191155 0.336713 0.226998 0.196237 0.158323 0.418442 0.305027 0.526069 0.094878 0.074025 0.239965 0.024257 0.240450 0.495328 0.934595 0.003649 0.002189 0.059567 0.004992 0.001846 0.006976 0.986185 0.014697 0.002062 0.002161 0.981080 0.004516 0.008092 0.954596 0.032796 0.031997 0.001826 0.002456 0.963721 0.076159 0.038475 0.093390 0.791976 0.364301 0.370406 0.074356 0.190936 0.274393 0.070776 0.211081 0.443749 0.300626 0.174184 0.130641 0.394549 0.248133 0.095791 0.276373 0.379704 0.433558 0.176868 0.240155 0.149419 0.295589 0.228429 0.166233 0.309749 0.223177 0.300272 0.115555 0.360997 Consensus sequence: WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW ----HDAAATAATADD------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00051 Sox8_primary Reverse Complement Original Motif Forward 4 12 0.014561 Species: Mus musculus Original motif 0.244952 0.197659 0.278014 0.279374 0.244434 0.136006 0.278446 0.341114 0.512025 0.129954 0.139069 0.218951 0.190001 0.086232 0.125500 0.598267 0.154692 0.325860 0.193904 0.325544 0.384624 0.130540 0.035110 0.449726 0.945021 0.006713 0.011975 0.036291 0.008386 0.026630 0.004166 0.960817 0.020908 0.005554 0.009294 0.964244 0.149285 0.038995 0.806085 0.005635 0.110990 0.007155 0.007797 0.874058 0.087283 0.099671 0.059611 0.753435 0.250662 0.432576 0.082152 0.234610 0.251277 0.174578 0.147771 0.426374 0.205121 0.137656 0.296366 0.360857 0.316796 0.152457 0.164403 0.366344 0.475864 0.128717 0.153551 0.241867 Consensus sequence: DDATBWATTGTTHHDDD Reverse complement motif 0.241867 0.128717 0.153551 0.475864 0.366344 0.152457 0.164403 0.316796 0.360857 0.137656 0.296366 0.205121 0.426374 0.174578 0.147771 0.251277 0.250662 0.082152 0.432576 0.234610 0.753435 0.099671 0.059611 0.087283 0.874058 0.007155 0.007797 0.110990 0.149285 0.806085 0.038995 0.005635 0.964244 0.005554 0.009294 0.020908 0.960817 0.026630 0.004166 0.008386 0.036291 0.006713 0.011975 0.945021 0.449726 0.130540 0.035110 0.384624 0.154692 0.193904 0.325860 0.325544 0.598267 0.086232 0.125500 0.190001 0.218951 0.129954 0.139069 0.512025 0.341114 0.136006 0.278446 0.244434 0.279374 0.197659 0.278014 0.244952 Consensus sequence: DDDHDAACAATWBATDD Alignment: DDATBWATTGTTHHDDD ---DDTATTATTTDH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00024 Glis2_secondary Original Motif Reverse Complement Backward 1 12 0.014886 Species: Mus musculus Original motif 0.365755 0.225782 0.091871 0.316593 0.343299 0.160876 0.206971 0.288854 0.060679 0.072038 0.092308 0.774975 0.713491 0.063350 0.137042 0.086116 0.174542 0.088095 0.094744 0.642620 0.097026 0.085027 0.139475 0.678472 0.710084 0.072723 0.128873 0.088320 0.369669 0.182092 0.127500 0.320739 0.181162 0.145491 0.093689 0.579659 0.710308 0.067407 0.054648 0.167638 0.679812 0.058228 0.089773 0.172186 0.705700 0.167070 0.033893 0.093337 0.217869 0.162331 0.460989 0.158811 0.412095 0.213865 0.220174 0.153866 Consensus sequence: HDTATTAHTAAAVV Reverse complement motif 0.153866 0.213865 0.220174 0.412095 0.217869 0.460989 0.162331 0.158811 0.093337 0.167070 0.033893 0.705700 0.172186 0.058228 0.089773 0.679812 0.167638 0.067407 0.054648 0.710308 0.579659 0.145491 0.093689 0.181162 0.320739 0.182092 0.127500 0.369669 0.088320 0.072723 0.128873 0.710084 0.678472 0.085027 0.139475 0.097026 0.642620 0.088095 0.094744 0.174542 0.086116 0.063350 0.137042 0.713491 0.774975 0.072038 0.092308 0.060679 0.288854 0.160876 0.206971 0.343299 0.316593 0.225782 0.091871 0.365755 Consensus sequence: BVTTTAHTAATADH Alignment: BVTTTAHTAATADH --HDAAATAATADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00096 Sox13_primary Original Motif Original Motif Backward 3 12 0.014968 Species: Mus musculus Original motif 0.269275 0.121320 0.165706 0.443700 0.188801 0.239798 0.175798 0.395603 0.368195 0.140376 0.162749 0.328680 0.497992 0.105708 0.282795 0.113505 0.130964 0.090292 0.620010 0.158734 0.825318 0.023531 0.125342 0.025809 0.959293 0.007648 0.010682 0.022377 0.019733 0.898543 0.014756 0.066968 0.943830 0.005894 0.014484 0.035792 0.949658 0.010125 0.029732 0.010485 0.038214 0.025063 0.006015 0.930708 0.465769 0.016866 0.079467 0.437898 0.416082 0.086340 0.115778 0.381801 0.356556 0.103268 0.179331 0.360845 0.206830 0.204618 0.120034 0.468518 0.302958 0.164260 0.071574 0.461209 Consensus sequence: DHDRGAACAATWWDHW Reverse complement motif 0.461209 0.164260 0.071574 0.302958 0.468518 0.204618 0.120034 0.206830 0.360845 0.103268 0.179331 0.356556 0.381801 0.086340 0.115778 0.416082 0.437898 0.016866 0.079467 0.465769 0.930708 0.025063 0.006015 0.038214 0.010485 0.010125 0.029732 0.949658 0.035792 0.005894 0.014484 0.943830 0.019733 0.014756 0.898543 0.066968 0.022377 0.007648 0.010682 0.959293 0.025809 0.023531 0.125342 0.825318 0.130964 0.620010 0.090292 0.158734 0.113505 0.105708 0.282795 0.497992 0.328680 0.140376 0.162749 0.368195 0.395603 0.239798 0.175798 0.188801 0.443700 0.121320 0.165706 0.269275 Consensus sequence: WHDWWATTGTTCKDHD Alignment: DHDRGAACAATWWDHW --HDAAATAATADD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 19 Motif name: wsTACwGTAsw Original motif 0.277778 0.222222 0.166667 0.333333 0.166667 0.444444 0.277778 0.111111 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.277778 0.444444 0.166667 0.333333 0.166667 0.222222 0.277778 Consensus sequence: HVTACWGTABD Reserve complement motif 0.277778 0.166667 0.222222 0.333333 0.111111 0.444444 0.277778 0.166667 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.277778 0.444444 0.111111 0.333333 0.222222 0.166667 0.277778 Consensus sequence: DBTACWGTAVH ************************************************************************ Best Matches for Motif ID 19 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00052 Osr2_primary Reverse Complement Reverse Complement Backward 2 11 0.000000 Species: Mus musculus Original motif 0.295210 0.230759 0.178832 0.295199 0.286163 0.186772 0.186150 0.340915 0.287577 0.235045 0.329453 0.147924 0.263264 0.191325 0.081978 0.463433 0.839420 0.118123 0.018788 0.023669 0.005488 0.984397 0.000830 0.009284 0.660134 0.001532 0.336574 0.001760 0.003020 0.001773 0.993144 0.002063 0.039664 0.001060 0.005054 0.954222 0.980339 0.000636 0.016776 0.002249 0.003849 0.001418 0.992166 0.002568 0.000858 0.950172 0.007228 0.041743 0.342840 0.230712 0.133570 0.292878 0.342486 0.316980 0.167294 0.173240 0.362426 0.178913 0.146709 0.311952 0.266586 0.140406 0.435643 0.157365 Consensus sequence: HHVHACRGTAGCHHHD Reverse complement motif 0.266586 0.435643 0.140406 0.157365 0.311952 0.178913 0.146709 0.362426 0.173240 0.316980 0.167294 0.342486 0.292878 0.230712 0.133570 0.342840 0.000858 0.007228 0.950172 0.041743 0.003849 0.992166 0.001418 0.002568 0.002249 0.000636 0.016776 0.980339 0.954222 0.001060 0.005054 0.039664 0.003020 0.993144 0.001773 0.002063 0.001760 0.001532 0.336574 0.660134 0.005488 0.000830 0.984397 0.009284 0.023669 0.118123 0.018788 0.839420 0.463433 0.191325 0.081978 0.263264 0.287577 0.329453 0.235045 0.147924 0.340915 0.186772 0.186150 0.286163 0.295199 0.230759 0.178832 0.295210 Consensus sequence: HHHHGCTACKGTHVHH Alignment: HHHHGCTACKGTHVHH ----DBTACWGTAVH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00027 Osr1_primary Reverse Complement Reverse Complement Backward 2 11 0.004806 Species: Mus musculus Original motif 0.260366 0.252887 0.224273 0.262474 0.239931 0.233883 0.190643 0.335543 0.257637 0.188706 0.242480 0.311177 0.323833 0.165978 0.161144 0.349046 0.824983 0.119267 0.027014 0.028736 0.009055 0.974108 0.000889 0.015947 0.659219 0.001516 0.337361 0.001905 0.002965 0.001643 0.993070 0.002321 0.047380 0.001758 0.009593 0.941269 0.974073 0.000741 0.023187 0.001999 0.006256 0.001341 0.990114 0.002290 0.001372 0.921382 0.010719 0.066527 0.449788 0.160658 0.105504 0.284050 0.392727 0.304490 0.187448 0.115335 0.361758 0.209213 0.175805 0.253224 0.420972 0.108912 0.289406 0.180710 Consensus sequence: HHDHACRGTAGCHVHD Reverse complement motif 0.180710 0.108912 0.289406 0.420972 0.253224 0.209213 0.175805 0.361758 0.115335 0.304490 0.187448 0.392727 0.284050 0.160658 0.105504 0.449788 0.001372 0.010719 0.921382 0.066527 0.006256 0.990114 0.001341 0.002290 0.001999 0.000741 0.023187 0.974073 0.941269 0.001758 0.009593 0.047380 0.002965 0.993070 0.001643 0.002321 0.001905 0.001516 0.337361 0.659219 0.009055 0.000889 0.974108 0.015947 0.028736 0.119267 0.027014 0.824983 0.349046 0.165978 0.161144 0.323833 0.311177 0.188706 0.242480 0.257637 0.335543 0.233883 0.190643 0.239931 0.262474 0.252887 0.224273 0.260366 Consensus sequence: DHBHGCTACKGTHDHH Alignment: DHBHGCTACKGTHDHH ----DBTACWGTAVH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00031 Zbtb3_primary Original Motif Reverse Complement Backward 4 11 0.016538 Species: Mus musculus Original motif 0.401190 0.144405 0.268531 0.185874 0.430224 0.168519 0.221247 0.180011 0.172575 0.268499 0.274136 0.284789 0.150971 0.297110 0.290868 0.261051 0.133421 0.282842 0.434718 0.149019 0.042798 0.941105 0.001785 0.014312 0.890788 0.002551 0.103316 0.003345 0.001887 0.951368 0.043722 0.003023 0.011633 0.002218 0.002269 0.983880 0.003597 0.003728 0.984819 0.007856 0.002946 0.903520 0.072457 0.021077 0.908487 0.057072 0.018256 0.016185 0.076237 0.329864 0.228896 0.365003 0.144926 0.162981 0.177370 0.514722 0.124970 0.327876 0.295814 0.251341 0.144592 0.313887 0.301912 0.239609 0.108463 0.241747 0.350296 0.299494 Consensus sequence: DDBBBCACTGCABTBBB Reverse complement motif 0.108463 0.350296 0.241747 0.299494 0.144592 0.301912 0.313887 0.239609 0.124970 0.295814 0.327876 0.251341 0.514722 0.162981 0.177370 0.144926 0.365003 0.329864 0.228896 0.076237 0.016185 0.057072 0.018256 0.908487 0.002946 0.072457 0.903520 0.021077 0.003597 0.984819 0.003728 0.007856 0.983880 0.002218 0.002269 0.011633 0.001887 0.043722 0.951368 0.003023 0.003345 0.002551 0.103316 0.890788 0.042798 0.001785 0.941105 0.014312 0.133421 0.434718 0.282842 0.149019 0.150971 0.290868 0.297110 0.261051 0.284789 0.268499 0.274136 0.172575 0.180011 0.168519 0.221247 0.430224 0.185874 0.144405 0.268531 0.401190 Consensus sequence: BBBAVTGCAGTGBBVDD Alignment: BBBAVTGCAGTGBBVDD ---HVTACWGTABD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Reverse Complement Original Motif Backward 7 11 0.024802 Species: Mus musculus Original motif 0.360997 0.300272 0.115555 0.223177 0.309749 0.228429 0.166233 0.295589 0.149419 0.176868 0.240155 0.433558 0.379704 0.095791 0.276373 0.248133 0.394549 0.174184 0.130641 0.300626 0.443749 0.070776 0.211081 0.274393 0.364301 0.074356 0.370406 0.190936 0.791976 0.038475 0.093390 0.076159 0.963721 0.001826 0.002456 0.031997 0.004516 0.954596 0.008092 0.032796 0.981080 0.002062 0.002161 0.014697 0.986185 0.001846 0.006976 0.004992 0.059567 0.003649 0.002189 0.934595 0.495328 0.024257 0.240450 0.239965 0.305027 0.094878 0.526069 0.074025 0.418442 0.196237 0.158323 0.226998 0.336713 0.220452 0.191155 0.251680 0.192296 0.300342 0.169047 0.338315 0.240387 0.144634 0.128513 0.486465 0.290763 0.271259 0.116600 0.321377 0.224825 0.296233 0.229255 0.249687 0.493240 0.171285 0.075148 0.260326 Consensus sequence: HHBDHDDAACAATDRHHHHHBW Reverse complement motif 0.260326 0.171285 0.075148 0.493240 0.224825 0.229255 0.296233 0.249687 0.321377 0.271259 0.116600 0.290763 0.486465 0.144634 0.128513 0.240387 0.338315 0.300342 0.169047 0.192296 0.251680 0.220452 0.191155 0.336713 0.226998 0.196237 0.158323 0.418442 0.305027 0.526069 0.094878 0.074025 0.239965 0.024257 0.240450 0.495328 0.934595 0.003649 0.002189 0.059567 0.004992 0.001846 0.006976 0.986185 0.014697 0.002062 0.002161 0.981080 0.004516 0.008092 0.954596 0.032796 0.031997 0.001826 0.002456 0.963721 0.076159 0.038475 0.093390 0.791976 0.364301 0.370406 0.074356 0.190936 0.274393 0.070776 0.211081 0.443749 0.300626 0.174184 0.130641 0.394549 0.248133 0.095791 0.276373 0.379704 0.433558 0.176868 0.240155 0.149419 0.295589 0.228429 0.166233 0.309749 0.223177 0.300272 0.115555 0.360997 Consensus sequence: WBHHHHHMDATTGTTHDHDVHH Alignment: HHBDHDDAACAATDRHHHHHBW -----DBTACWGTAVH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00023 Sox30_primary Original Motif Reverse Complement Backward 3 11 0.029417 Species: Mus musculus Original motif 0.372432 0.102933 0.322145 0.202491 0.328072 0.182071 0.157347 0.332510 0.289417 0.084511 0.292873 0.333198 0.157571 0.227851 0.441662 0.172917 0.716832 0.049010 0.201411 0.032747 0.957368 0.003162 0.004402 0.035068 0.003907 0.862678 0.009407 0.124008 0.977231 0.007658 0.004263 0.010847 0.976481 0.004510 0.015225 0.003784 0.067568 0.004353 0.005071 0.923008 0.158205 0.108442 0.467023 0.266330 0.334549 0.091557 0.510241 0.063654 0.456431 0.182602 0.150234 0.210732 0.387485 0.241062 0.151504 0.219950 0.188387 0.269857 0.176514 0.365242 0.175680 0.243984 0.165833 0.414502 Consensus sequence: DHDBAACAATDRHHHH Reverse complement motif 0.414502 0.243984 0.165833 0.175680 0.365242 0.269857 0.176514 0.188387 0.219950 0.241062 0.151504 0.387485 0.210732 0.182602 0.150234 0.456431 0.334549 0.510241 0.091557 0.063654 0.158205 0.467023 0.108442 0.266330 0.923008 0.004353 0.005071 0.067568 0.003784 0.004510 0.015225 0.976481 0.010847 0.007658 0.004263 0.977231 0.003907 0.009407 0.862678 0.124008 0.035068 0.003162 0.004402 0.957368 0.032747 0.049010 0.201411 0.716832 0.157571 0.441662 0.227851 0.172917 0.333198 0.084511 0.292873 0.289417 0.332510 0.182071 0.157347 0.328072 0.202491 0.102933 0.322145 0.372432 Consensus sequence: HHHHMHATTGTTBDHD Alignment: HHHHMHATTGTTBDHD ---HVTACWGTABD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00075 Sox15_primary Original Motif Reverse Complement Forward 4 11 0.030154 Species: Mus musculus Original motif 0.287334 0.139055 0.124297 0.449314 0.278683 0.214056 0.278266 0.228994 0.196938 0.172103 0.339663 0.291296 0.343773 0.089222 0.198442 0.368564 0.217683 0.069371 0.485495 0.227451 0.795638 0.049144 0.086842 0.068377 0.932914 0.008887 0.006817 0.051381 0.018504 0.893128 0.012624 0.075744 0.960471 0.008180 0.009943 0.021405 0.966816 0.008885 0.008787 0.015512 0.086103 0.016953 0.005969 0.890975 0.475989 0.013028 0.097844 0.413139 0.304890 0.097952 0.464158 0.133000 0.458453 0.118585 0.307695 0.115267 0.205225 0.241082 0.224896 0.328798 0.328081 0.178970 0.116466 0.376483 0.188001 0.185031 0.192398 0.434571 Consensus sequence: HDDDDAACAATWRRBHD Reverse complement motif 0.434571 0.185031 0.192398 0.188001 0.376483 0.178970 0.116466 0.328081 0.328798 0.241082 0.224896 0.205225 0.115267 0.118585 0.307695 0.458453 0.304890 0.464158 0.097952 0.133000 0.413139 0.013028 0.097844 0.475989 0.890975 0.016953 0.005969 0.086103 0.015512 0.008885 0.008787 0.966816 0.021405 0.008180 0.009943 0.960471 0.018504 0.012624 0.893128 0.075744 0.051381 0.008887 0.006817 0.932914 0.068377 0.049144 0.086842 0.795638 0.217683 0.485495 0.069371 0.227451 0.368564 0.089222 0.198442 0.343773 0.196938 0.339663 0.172103 0.291296 0.228994 0.214056 0.278266 0.278683 0.449314 0.139055 0.124297 0.287334 Consensus sequence: DHVKMWATTGTTHDHDH Alignment: DHVKMWATTGTTHDHDH ---HVTACWGTABD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00016 Sry_secondary Reverse Complement Reverse Complement Backward 5 11 0.031099 Species: Mus musculus Original motif 0.219740 0.291283 0.118755 0.370223 0.242432 0.282700 0.205912 0.268956 0.327415 0.133992 0.255532 0.283060 0.263415 0.304333 0.213668 0.218583 0.259356 0.177510 0.294274 0.268860 0.315458 0.184947 0.444440 0.055155 0.572256 0.199521 0.180616 0.047606 0.881847 0.020818 0.032731 0.064603 0.028134 0.863210 0.052977 0.055679 0.921133 0.023179 0.036360 0.019328 0.913642 0.029557 0.028830 0.027972 0.131537 0.035078 0.033568 0.799817 0.412204 0.069669 0.279439 0.238689 0.247458 0.179342 0.390493 0.182707 0.282951 0.233824 0.324889 0.158336 0.176058 0.325159 0.163416 0.335366 0.172201 0.210000 0.453746 0.164053 Consensus sequence: HHDHDRAACAATDDVHV Reverse complement motif 0.172201 0.453746 0.210000 0.164053 0.335366 0.325159 0.163416 0.176058 0.282951 0.324889 0.233824 0.158336 0.247458 0.390493 0.179342 0.182707 0.238689 0.069669 0.279439 0.412204 0.799817 0.035078 0.033568 0.131537 0.027972 0.029557 0.028830 0.913642 0.019328 0.023179 0.036360 0.921133 0.028134 0.052977 0.863210 0.055679 0.064603 0.020818 0.032731 0.881847 0.047606 0.199521 0.180616 0.572256 0.315458 0.444440 0.184947 0.055155 0.259356 0.294274 0.177510 0.268860 0.263415 0.213668 0.304333 0.218583 0.283060 0.133992 0.255532 0.327415 0.242432 0.205912 0.282700 0.268956 0.370223 0.291283 0.118755 0.219740 Consensus sequence: VHVHDATTGTTMHDDDH Alignment: VHVHDATTGTTMHDDDH --DBTACWGTAVH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00064 Sox18_primary Reverse Complement Original Motif Forward 2 11 0.031364 Species: Mus musculus Original motif 0.171923 0.236711 0.194037 0.397329 0.365499 0.126080 0.115062 0.393358 0.154238 0.330371 0.213820 0.301571 0.411934 0.286682 0.023094 0.278290 0.925907 0.006960 0.008324 0.058809 0.020208 0.014069 0.008364 0.957359 0.019255 0.004244 0.009748 0.966753 0.109433 0.025833 0.844558 0.020176 0.053352 0.006877 0.015312 0.924459 0.107006 0.077857 0.051283 0.763854 0.208320 0.284484 0.245065 0.262131 0.230912 0.143849 0.075255 0.549985 0.374917 0.276156 0.167160 0.181766 0.477406 0.100035 0.175575 0.246983 0.375092 0.278435 0.139104 0.207369 0.352086 0.238643 0.148396 0.260874 Consensus sequence: BWBHATTGTTBTHDHH Reverse complement motif 0.260874 0.238643 0.148396 0.352086 0.207369 0.278435 0.139104 0.375092 0.246983 0.100035 0.175575 0.477406 0.181766 0.276156 0.167160 0.374917 0.549985 0.143849 0.075255 0.230912 0.208320 0.245065 0.284484 0.262131 0.763854 0.077857 0.051283 0.107006 0.924459 0.006877 0.015312 0.053352 0.109433 0.844558 0.025833 0.020176 0.966753 0.004244 0.009748 0.019255 0.957359 0.014069 0.008364 0.020208 0.058809 0.006960 0.008324 0.925907 0.278290 0.286682 0.023094 0.411934 0.154238 0.213820 0.330371 0.301571 0.393358 0.126080 0.115062 0.365499 0.397329 0.236711 0.194037 0.171923 Consensus sequence: HHDHABAACAATHBWV Alignment: BWBHATTGTTBTHDHH -DBTACWGTAVH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00092 Myb_primary Reverse Complement Original Motif Forward 4 11 0.031424 Species: Mus musculus Original motif 0.328645 0.216829 0.175041 0.279486 0.206917 0.095182 0.203533 0.494368 0.222004 0.148675 0.347360 0.281962 0.261099 0.154556 0.318840 0.265505 0.377807 0.263226 0.136863 0.222105 0.760794 0.008750 0.150250 0.080207 0.825640 0.005474 0.090464 0.078422 0.026327 0.960952 0.000707 0.012015 0.006831 0.825142 0.158264 0.009762 0.003618 0.003083 0.991947 0.001351 0.005535 0.009490 0.008936 0.976039 0.014230 0.225407 0.002645 0.757718 0.683148 0.019522 0.184293 0.113036 0.312491 0.189333 0.105503 0.392673 0.330394 0.234925 0.083817 0.350864 0.290215 0.302656 0.081892 0.325237 0.235445 0.214519 0.215223 0.334814 Consensus sequence: HDDDHAACCGTTAHHHD Reverse complement motif 0.334814 0.214519 0.215223 0.235445 0.325237 0.302656 0.081892 0.290215 0.350864 0.234925 0.083817 0.330394 0.392673 0.189333 0.105503 0.312491 0.113036 0.019522 0.184293 0.683148 0.757718 0.225407 0.002645 0.014230 0.976039 0.009490 0.008936 0.005535 0.003618 0.991947 0.003083 0.001351 0.006831 0.158264 0.825142 0.009762 0.026327 0.000707 0.960952 0.012015 0.078422 0.005474 0.090464 0.825640 0.080207 0.008750 0.150250 0.760794 0.222105 0.263226 0.136863 0.377807 0.261099 0.318840 0.154556 0.265505 0.222004 0.347360 0.148675 0.281962 0.494368 0.095182 0.203533 0.206917 0.279486 0.216829 0.175041 0.328645 Consensus sequence: DHHHTAACGGTTHHHDH Alignment: HDDDHAACCGTTAHHHD ---DBTACWGTAVH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00071 Sox21_secondary Original Motif Original Motif Backward 5 11 0.031979 Species: Mus musculus Original motif 0.289827 0.292323 0.257901 0.159949 0.312889 0.255971 0.306275 0.124865 0.087736 0.328581 0.156985 0.426697 0.156538 0.422710 0.236667 0.184085 0.456458 0.154378 0.033618 0.355546 0.879378 0.018002 0.036590 0.066030 0.013874 0.050287 0.015516 0.920323 0.031467 0.021632 0.016694 0.930207 0.022243 0.104165 0.852561 0.021030 0.076816 0.021065 0.017214 0.884905 0.036052 0.190539 0.137527 0.635882 0.027658 0.616331 0.198060 0.157952 0.242504 0.348123 0.230614 0.178759 0.220769 0.224223 0.288143 0.266865 0.259093 0.309094 0.164255 0.267558 0.233346 0.199361 0.253780 0.313513 0.348478 0.202339 0.278031 0.171153 Consensus sequence: VVYBWATTGTTCVBHDV Reverse complement motif 0.171153 0.202339 0.278031 0.348478 0.313513 0.199361 0.253780 0.233346 0.259093 0.164255 0.309094 0.267558 0.220769 0.288143 0.224223 0.266865 0.242504 0.230614 0.348123 0.178759 0.027658 0.198060 0.616331 0.157952 0.635882 0.190539 0.137527 0.036052 0.884905 0.021065 0.017214 0.076816 0.022243 0.852561 0.104165 0.021030 0.930207 0.021632 0.016694 0.031467 0.920323 0.050287 0.015516 0.013874 0.066030 0.018002 0.036590 0.879378 0.355546 0.154378 0.033618 0.456458 0.156538 0.236667 0.422710 0.184085 0.426697 0.328581 0.156985 0.087736 0.124865 0.255971 0.306275 0.312889 0.289827 0.257901 0.292323 0.159949 Consensus sequence: BDDBVGAACAATWBMBV Alignment: VVYBWATTGTTCVBHDV --HVTACWGTABD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 20 Motif name: dhACATTCTkh Original motif 0.333333 0.000000 0.333333 0.333333 0.333333 0.333333 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.333333 0.333333 0.000000 0.333333 Consensus sequence: DHACATTCTGH Reserve complement motif 0.333333 0.333333 0.000000 0.333333 0.000000 0.666667 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.333333 0.333333 0.000000 0.333333 0.333333 0.000000 0.333333 0.333333 Consensus sequence: HCAGAATGTHD ************************************************************************ Best Matches for Motif ID 20 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00038 Spdef_secondary Reverse Complement Reverse Complement Forward 4 11 0.005816 Species: Mus musculus Original motif 0.249693 0.170111 0.349462 0.230734 0.417537 0.133630 0.158772 0.290062 0.241753 0.248691 0.251987 0.257568 0.351468 0.208028 0.178365 0.262139 0.685401 0.048428 0.173290 0.092880 0.105542 0.546881 0.114355 0.233222 0.768958 0.014653 0.109429 0.106961 0.035014 0.019209 0.022146 0.923631 0.026411 0.928142 0.015617 0.029830 0.022321 0.922707 0.029827 0.025145 0.027563 0.088841 0.036549 0.847047 0.773436 0.042478 0.008878 0.175207 0.033877 0.188822 0.507219 0.270082 0.285243 0.151973 0.056921 0.505863 0.446072 0.155307 0.182833 0.215787 0.302102 0.163570 0.398527 0.135801 Consensus sequence: DDBHACATCCTAKWDV Reverse complement motif 0.302102 0.398527 0.163570 0.135801 0.215787 0.155307 0.182833 0.446072 0.505863 0.151973 0.056921 0.285243 0.033877 0.507219 0.188822 0.270082 0.175207 0.042478 0.008878 0.773436 0.847047 0.088841 0.036549 0.027563 0.022321 0.029827 0.922707 0.025145 0.026411 0.015617 0.928142 0.029830 0.923631 0.019209 0.022146 0.035014 0.106961 0.014653 0.109429 0.768958 0.105542 0.114355 0.546881 0.233222 0.092880 0.048428 0.173290 0.685401 0.262139 0.208028 0.178365 0.351468 0.257568 0.248691 0.251987 0.241753 0.290062 0.133630 0.158772 0.417537 0.249693 0.349462 0.170111 0.230734 Consensus sequence: VDWYTAGGATGTHVDH Alignment: VDWYTAGGATGTHVDH ---HCAGAATGTHD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00528 Foxm1_secondary Original Motif Reverse Complement Forward 8 11 0.005829 Species: Mus musculus Original motif 0.399785 0.446658 0.111435 0.042122 0.535175 0.103991 0.089706 0.271128 0.078171 0.387987 0.375083 0.158759 0.309001 0.519142 0.070618 0.101239 0.201844 0.255818 0.323149 0.219190 0.534101 0.109845 0.235026 0.121028 0.656038 0.037473 0.261484 0.045006 0.315713 0.164290 0.471815 0.048182 0.651960 0.009412 0.328237 0.010391 0.937365 0.017313 0.007516 0.037807 0.019983 0.044238 0.012387 0.923392 0.061195 0.021485 0.881645 0.035675 0.017521 0.952998 0.013139 0.016342 0.254160 0.029735 0.493023 0.223082 0.239200 0.593324 0.114503 0.052973 0.610822 0.071539 0.099169 0.218470 0.166610 0.389712 0.204400 0.239278 0.227752 0.361626 0.178497 0.232125 0.537030 0.182466 0.026035 0.254470 0.235902 0.151006 0.043788 0.569304 0.081851 0.250397 0.590059 0.077693 0.340417 0.189613 0.272075 0.197895 Consensus sequence: MWSMBAARRATGCDCABHATGD Reverse complement motif 0.197895 0.189613 0.272075 0.340417 0.081851 0.590059 0.250397 0.077693 0.569304 0.151006 0.043788 0.235902 0.254470 0.182466 0.026035 0.537030 0.227752 0.178497 0.361626 0.232125 0.166610 0.204400 0.389712 0.239278 0.218470 0.071539 0.099169 0.610822 0.239200 0.114503 0.593324 0.052973 0.254160 0.493023 0.029735 0.223082 0.017521 0.013139 0.952998 0.016342 0.061195 0.881645 0.021485 0.035675 0.923392 0.044238 0.012387 0.019983 0.037807 0.017313 0.007516 0.937365 0.010391 0.009412 0.328237 0.651960 0.315713 0.471815 0.164290 0.048182 0.045006 0.037473 0.261484 0.656038 0.121028 0.109845 0.235026 0.534101 0.201844 0.323149 0.255818 0.219190 0.309001 0.070618 0.519142 0.101239 0.078171 0.375083 0.387987 0.158759 0.271128 0.103991 0.089706 0.535175 0.399785 0.111435 0.446658 0.042122 Consensus sequence: DCATDBTGHGCATKMTTBRSWR Alignment: DCATDBTGHGCATKMTTBRSWR -------DHACATTCTGH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00023 Sox30_primary Original Motif Reverse Complement Backward 4 11 0.006131 Species: Mus musculus Original motif 0.372432 0.102933 0.322145 0.202491 0.328072 0.182071 0.157347 0.332510 0.289417 0.084511 0.292873 0.333198 0.157571 0.227851 0.441662 0.172917 0.716832 0.049010 0.201411 0.032747 0.957368 0.003162 0.004402 0.035068 0.003907 0.862678 0.009407 0.124008 0.977231 0.007658 0.004263 0.010847 0.976481 0.004510 0.015225 0.003784 0.067568 0.004353 0.005071 0.923008 0.158205 0.108442 0.467023 0.266330 0.334549 0.091557 0.510241 0.063654 0.456431 0.182602 0.150234 0.210732 0.387485 0.241062 0.151504 0.219950 0.188387 0.269857 0.176514 0.365242 0.175680 0.243984 0.165833 0.414502 Consensus sequence: DHDBAACAATDRHHHH Reverse complement motif 0.414502 0.243984 0.165833 0.175680 0.365242 0.269857 0.176514 0.188387 0.219950 0.241062 0.151504 0.387485 0.210732 0.182602 0.150234 0.456431 0.334549 0.510241 0.091557 0.063654 0.158205 0.467023 0.108442 0.266330 0.923008 0.004353 0.005071 0.067568 0.003784 0.004510 0.015225 0.976481 0.010847 0.007658 0.004263 0.977231 0.003907 0.009407 0.862678 0.124008 0.035068 0.003162 0.004402 0.957368 0.032747 0.049010 0.201411 0.716832 0.157571 0.441662 0.227851 0.172917 0.333198 0.084511 0.292873 0.289417 0.332510 0.182071 0.157347 0.328072 0.202491 0.102933 0.322145 0.372432 Consensus sequence: HHHHMHATTGTTBDHD Alignment: HHHHMHATTGTTBDHD --DHACATTCTGH--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00034 Sox7_primary Original Motif Reverse Complement Forward 6 11 0.011928 Species: Mus musculus Original motif 0.360997 0.300272 0.115555 0.223177 0.309749 0.228429 0.166233 0.295589 0.149419 0.176868 0.240155 0.433558 0.379704 0.095791 0.276373 0.248133 0.394549 0.174184 0.130641 0.300626 0.443749 0.070776 0.211081 0.274393 0.364301 0.074356 0.370406 0.190936 0.791976 0.038475 0.093390 0.076159 0.963721 0.001826 0.002456 0.031997 0.004516 0.954596 0.008092 0.032796 0.981080 0.002062 0.002161 0.014697 0.986185 0.001846 0.006976 0.004992 0.059567 0.003649 0.002189 0.934595 0.495328 0.024257 0.240450 0.239965 0.305027 0.094878 0.526069 0.074025 0.418442 0.196237 0.158323 0.226998 0.336713 0.220452 0.191155 0.251680 0.192296 0.300342 0.169047 0.338315 0.240387 0.144634 0.128513 0.486465 0.290763 0.271259 0.116600 0.321377 0.224825 0.296233 0.229255 0.249687 0.493240 0.171285 0.075148 0.260326 Consensus sequence: HHBDHDDAACAATDRHHHHHBW Reverse complement motif 0.260326 0.171285 0.075148 0.493240 0.224825 0.229255 0.296233 0.249687 0.321377 0.271259 0.116600 0.290763 0.486465 0.144634 0.128513 0.240387 0.338315 0.300342 0.169047 0.192296 0.251680 0.220452 0.191155 0.336713 0.226998 0.196237 0.158323 0.418442 0.305027 0.526069 0.094878 0.074025 0.239965 0.024257 0.240450 0.495328 0.934595 0.003649 0.002189 0.059567 0.004992 0.001846 0.006976 0.986185 0.014697 0.002062 0.002161 0.981080 0.004516 0.008092 0.954596 0.032796 0.031997 0.001826 0.002456 0.963721 0.076159 0.038475 0.093390 0.791976 0.364301 0.370406 0.074356 0.190936 0.274393 0.070776 0.211081 0.443749 0.300626 0.174184 0.130641 0.394549 0.248133 0.095791 0.276373 0.379704 0.433558 0.176868 0.240155 0.149419 0.295589 0.228429 0.166233 0.309749 0.223177 0.300272 0.115555 0.360997 Consensus sequence: WBHHHHHMDATTGTTHDHDVHH Alignment: WBHHHHHMDATTGTTHDHDVHH -----DHACATTCTGH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00030 Sox11_primary Original Motif Reverse Complement Forward 3 11 0.012280 Species: Mus musculus Original motif 0.351812 0.238467 0.143954 0.265768 0.195246 0.235838 0.281473 0.287443 0.349478 0.172616 0.210739 0.267167 0.484061 0.110438 0.173131 0.232370 0.276692 0.070713 0.479604 0.172991 0.859124 0.044167 0.083951 0.012758 0.975608 0.002029 0.002285 0.020079 0.006422 0.978485 0.007124 0.007969 0.987489 0.003025 0.002868 0.006617 0.987739 0.005463 0.002730 0.004067 0.693013 0.004067 0.002445 0.300475 0.189100 0.003677 0.801408 0.005814 0.352090 0.072517 0.567737 0.007656 0.542316 0.176545 0.192768 0.088371 0.196382 0.304176 0.205985 0.293457 0.289415 0.201358 0.182937 0.326290 0.385801 0.216362 0.152363 0.245475 Consensus sequence: HBDDRAACAAAGRABHH Reverse complement motif 0.245475 0.216362 0.152363 0.385801 0.326290 0.201358 0.182937 0.289415 0.196382 0.205985 0.304176 0.293457 0.088371 0.176545 0.192768 0.542316 0.352090 0.567737 0.072517 0.007656 0.189100 0.801408 0.003677 0.005814 0.300475 0.004067 0.002445 0.693013 0.004067 0.005463 0.002730 0.987739 0.006617 0.003025 0.002868 0.987489 0.006422 0.007124 0.978485 0.007969 0.020079 0.002029 0.002285 0.975608 0.012758 0.044167 0.083951 0.859124 0.276692 0.479604 0.070713 0.172991 0.232370 0.110438 0.173131 0.484061 0.267167 0.172616 0.210739 0.349478 0.287443 0.235838 0.281473 0.195246 0.265768 0.238467 0.143954 0.351812 Consensus sequence: HHBTMCTTTGTTMDDVH Alignment: HHBTMCTTTGTTMDDVH --DHACATTCTGH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00250 Irx5 Original Motif Reverse Complement Backward 3 11 0.013277 Species: Mus musculus Original motif 0.367463 0.110357 0.154650 0.367530 0.435675 0.104106 0.185653 0.274566 0.309411 0.166534 0.199426 0.324629 0.330171 0.218393 0.207727 0.243708 0.326575 0.006155 0.067531 0.599738 0.934344 0.018417 0.011430 0.035810 0.004941 0.961788 0.005465 0.027806 0.940152 0.001107 0.011177 0.047564 0.047564 0.011177 0.001107 0.940152 0.027806 0.005465 0.961788 0.004941 0.035810 0.011430 0.018417 0.934344 0.599738 0.067531 0.006155 0.326575 0.348557 0.239288 0.195868 0.216288 0.376605 0.112652 0.210787 0.299957 0.540552 0.074408 0.115847 0.269192 0.210439 0.212707 0.245294 0.331559 0.303891 0.113735 0.133741 0.448633 Consensus sequence: DDDHWACATGTWHDABW Reverse complement motif 0.448633 0.113735 0.133741 0.303891 0.331559 0.212707 0.245294 0.210439 0.269192 0.074408 0.115847 0.540552 0.299957 0.112652 0.210787 0.376605 0.216288 0.239288 0.195868 0.348557 0.326575 0.067531 0.006155 0.599738 0.934344 0.011430 0.018417 0.035810 0.027806 0.961788 0.005465 0.004941 0.940152 0.011177 0.001107 0.047564 0.047564 0.001107 0.011177 0.940152 0.004941 0.005465 0.961788 0.027806 0.035810 0.018417 0.011430 0.934344 0.599738 0.006155 0.067531 0.326575 0.243708 0.218393 0.207727 0.330171 0.324629 0.166534 0.199426 0.309411 0.274566 0.104106 0.185653 0.435675 0.367530 0.110357 0.154650 0.367463 Consensus sequence: WVTDHWACATGTWHDDD Alignment: WVTDHWACATGTWHDDD ----DHACATTCTGH-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00057 Zic2_secondary Reverse Complement Original Motif Backward 1 11 0.014140 Species: Mus musculus Original motif 0.201522 0.336845 0.183740 0.277892 0.238705 0.354378 0.165332 0.241585 0.350858 0.031427 0.308482 0.309233 0.104423 0.870794 0.018676 0.006107 0.313246 0.259944 0.277570 0.149241 0.003590 0.973377 0.002520 0.020513 0.899716 0.025489 0.015458 0.059336 0.049224 0.006415 0.938214 0.006147 0.002021 0.859631 0.007903 0.130445 0.772818 0.002659 0.187334 0.037190 0.008456 0.015170 0.594695 0.381679 0.004118 0.009188 0.961506 0.025188 0.367151 0.230955 0.204475 0.197419 0.267508 0.193660 0.430070 0.108762 0.444449 0.099127 0.212182 0.244241 Consensus sequence: HHDCVCAGCAKGVVD Reverse complement motif 0.244241 0.099127 0.212182 0.444449 0.267508 0.430070 0.193660 0.108762 0.197419 0.230955 0.204475 0.367151 0.004118 0.961506 0.009188 0.025188 0.008456 0.594695 0.015170 0.381679 0.037190 0.002659 0.187334 0.772818 0.002021 0.007903 0.859631 0.130445 0.049224 0.938214 0.006415 0.006147 0.059336 0.025489 0.015458 0.899716 0.003590 0.002520 0.973377 0.020513 0.149241 0.259944 0.277570 0.313246 0.104423 0.018676 0.870794 0.006107 0.309233 0.031427 0.308482 0.350858 0.238705 0.165332 0.354378 0.241585 0.201522 0.183740 0.336845 0.277892 Consensus sequence: DVBCYTGCTGBGDDD Alignment: HHDCVCAGCAKGVVD ----HCAGAATGTHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00062 Sox4_primary Original Motif Reverse Complement Forward 3 11 0.014390 Species: Mus musculus Original motif 0.427843 0.231210 0.119424 0.221523 0.196506 0.239531 0.304906 0.259057 0.302488 0.156922 0.290190 0.250401 0.433872 0.149126 0.196496 0.220506 0.258426 0.076511 0.475100 0.189963 0.841714 0.046453 0.099915 0.011918 0.983853 0.001612 0.001362 0.013174 0.003460 0.982032 0.005728 0.008780 0.989743 0.002253 0.002020 0.005984 0.990761 0.003397 0.002843 0.003000 0.770864 0.003540 0.001549 0.224048 0.235342 0.002598 0.757383 0.004677 0.371426 0.089574 0.529959 0.009040 0.480804 0.196949 0.240413 0.081833 0.187158 0.355102 0.216599 0.241142 0.248006 0.232182 0.157452 0.362360 0.403367 0.177684 0.164649 0.254300 Consensus sequence: HBDDDAACAAAGRVBHH Reverse complement motif 0.254300 0.177684 0.164649 0.403367 0.362360 0.232182 0.157452 0.248006 0.187158 0.216599 0.355102 0.241142 0.081833 0.196949 0.240413 0.480804 0.371426 0.529959 0.089574 0.009040 0.235342 0.757383 0.002598 0.004677 0.224048 0.003540 0.001549 0.770864 0.003000 0.003397 0.002843 0.990761 0.005984 0.002253 0.002020 0.989743 0.003460 0.005728 0.982032 0.008780 0.013174 0.001612 0.001362 0.983853 0.011918 0.046453 0.099915 0.841714 0.258426 0.475100 0.076511 0.189963 0.220506 0.149126 0.196496 0.433872 0.250401 0.156922 0.290190 0.302488 0.196506 0.304906 0.239531 0.259057 0.221523 0.231210 0.119424 0.427843 Consensus sequence: HHBBMCTTTGTTHDDBH Alignment: HHBBMCTTTGTTHDDBH --DHACATTCTGH---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00004 Sox14_secondary Reverse Complement Original Motif Backward 2 11 0.015196 Species: Mus musculus Original motif 0.191264 0.345487 0.212142 0.251106 0.105033 0.130838 0.338939 0.425191 0.126539 0.333031 0.233364 0.307066 0.641901 0.114039 0.195933 0.048127 0.153349 0.532437 0.272427 0.041786 0.934680 0.009395 0.019668 0.036257 0.013611 0.927298 0.037729 0.021361 0.964293 0.018416 0.006724 0.010568 0.962181 0.018004 0.014592 0.005223 0.229593 0.016301 0.007632 0.746474 0.268456 0.030092 0.519349 0.182102 0.201484 0.107350 0.588833 0.102334 0.253726 0.259057 0.242924 0.244293 0.168663 0.203061 0.347898 0.280378 0.175853 0.339716 0.301724 0.182707 Consensus sequence: BKBASACAATRGHBB Reverse complement motif 0.175853 0.301724 0.339716 0.182707 0.168663 0.347898 0.203061 0.280378 0.253726 0.242924 0.259057 0.244293 0.201484 0.588833 0.107350 0.102334 0.268456 0.519349 0.030092 0.182102 0.746474 0.016301 0.007632 0.229593 0.005223 0.018004 0.014592 0.962181 0.010568 0.018416 0.006724 0.964293 0.013611 0.037729 0.927298 0.021361 0.036257 0.009395 0.019668 0.934680 0.153349 0.272427 0.532437 0.041786 0.048127 0.114039 0.195933 0.641901 0.126539 0.233364 0.333031 0.307066 0.425191 0.130838 0.338939 0.105033 0.191264 0.212142 0.345487 0.251106 Consensus sequence: BBDCMATTGTSTBRB Alignment: BKBASACAATRGHBB ---HCAGAATGTHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00064 Sox18_primary Original Motif Original Motif Backward 6 11 0.015273 Species: Mus musculus Original motif 0.171923 0.236711 0.194037 0.397329 0.365499 0.126080 0.115062 0.393358 0.154238 0.330371 0.213820 0.301571 0.411934 0.286682 0.023094 0.278290 0.925907 0.006960 0.008324 0.058809 0.020208 0.014069 0.008364 0.957359 0.019255 0.004244 0.009748 0.966753 0.109433 0.025833 0.844558 0.020176 0.053352 0.006877 0.015312 0.924459 0.107006 0.077857 0.051283 0.763854 0.208320 0.284484 0.245065 0.262131 0.230912 0.143849 0.075255 0.549985 0.374917 0.276156 0.167160 0.181766 0.477406 0.100035 0.175575 0.246983 0.375092 0.278435 0.139104 0.207369 0.352086 0.238643 0.148396 0.260874 Consensus sequence: BWBHATTGTTBTHDHH Reverse complement motif 0.260874 0.238643 0.148396 0.352086 0.207369 0.278435 0.139104 0.375092 0.246983 0.100035 0.175575 0.477406 0.181766 0.276156 0.167160 0.374917 0.549985 0.143849 0.075255 0.230912 0.208320 0.245065 0.284484 0.262131 0.763854 0.077857 0.051283 0.107006 0.924459 0.006877 0.015312 0.053352 0.109433 0.844558 0.025833 0.020176 0.966753 0.004244 0.009748 0.019255 0.957359 0.014069 0.008364 0.020208 0.058809 0.006960 0.008324 0.925907 0.278290 0.286682 0.023094 0.411934 0.154238 0.213820 0.330371 0.301571 0.393358 0.126080 0.115062 0.365499 0.397329 0.236711 0.194037 0.171923 Consensus sequence: HHDHABAACAATHBWV Alignment: BWBHATTGTTBTHDHH DHACATTCTGH----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dataset #: 2 Motif ID: 21 Motif name: wbgTAAATAww Original motif 0.285714 0.142857 0.178571 0.392857 0.214286 0.285714 0.250000 0.250000 0.142857 0.071429 0.678571 0.107143 0.000000 0.000000 0.000000 1.000000 0.928571 0.000000 0.035714 0.035714 0.821429 0.107143 0.035714 0.035714 0.821429 0.000000 0.178571 0.000000 0.000000 0.071429 0.000000 0.928571 0.928571 0.035714 0.035714 0.000000 0.285714 0.214286 0.142857 0.357143 0.392857 0.178571 0.178571 0.250000 Consensus sequence: DBGTAAATAHD Reserve complement motif 0.250000 0.178571 0.178571 0.392857 0.357143 0.214286 0.142857 0.285714 0.000000 0.035714 0.035714 0.928571 0.928571 0.071429 0.000000 0.000000 0.000000 0.000000 0.178571 0.821429 0.035714 0.107143 0.035714 0.821429 0.035714 0.000000 0.035714 0.928571 1.000000 0.000000 0.000000 0.000000 0.142857 0.678571 0.071429 0.107143 0.214286 0.250000 0.285714 0.250000 0.392857 0.142857 0.178571 0.285714 Consensus sequence: DHTATTTACBD ************************************************************************ Best Matches for Motif ID 21 (Highest to Lowest) ************************************************************************ Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00242 Hoxc8 Reverse Complement Reverse Complement Backward 4 11 0.000000 Species: Mus musculus Original motif 0.207757 0.224760 0.242606 0.324877 0.281324 0.192775 0.088963 0.436938 0.244120 0.097112 0.411478 0.247291 0.315658 0.098135 0.358617 0.227589 0.285730 0.169686 0.369841 0.174744 0.128507 0.066146 0.562148 0.243199 0.010261 0.077035 0.002960 0.909744 0.913373 0.045800 0.004323 0.036504 0.973569 0.009101 0.004269 0.013060 0.013060 0.004269 0.009101 0.973569 0.036504 0.004323 0.045800 0.913373 0.909744 0.002960 0.077035 0.010261 0.348251 0.333707 0.038080 0.279963 0.174744 0.369841 0.169686 0.285730 0.205631 0.095734 0.416805 0.281830 0.087198 0.156910 0.166089 0.589803 Consensus sequence: BHDDDGTAATTAHHDT Reverse complement motif 0.589803 0.156910 0.166089 0.087198 0.205631 0.416805 0.095734 0.281830 0.174744 0.169686 0.369841 0.285730 0.279963 0.333707 0.038080 0.348251 0.010261 0.002960 0.077035 0.909744 0.913373 0.004323 0.045800 0.036504 0.973569 0.004269 0.009101 0.013060 0.013060 0.009101 0.004269 0.973569 0.036504 0.045800 0.004323 0.913373 0.909744 0.077035 0.002960 0.010261 0.128507 0.562148 0.066146 0.243199 0.285730 0.369841 0.169686 0.174744 0.315658 0.358617 0.098135 0.227589 0.244120 0.411478 0.097112 0.247291 0.436938 0.192775 0.088963 0.281324 0.324877 0.224760 0.242606 0.207757 Consensus sequence: AHDHTAATTACHHHHV Alignment: AHDHTAATTACHHHHV --DHTATTTACBD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00073 Foxa2_primary Original Motif Original Motif Backward 4 11 0.004535 Species: Mus musculus Original motif 0.335487 0.205062 0.128957 0.330494 0.411635 0.179625 0.175701 0.233038 0.412976 0.128602 0.091890 0.366532 0.608396 0.079002 0.107142 0.205460 0.433474 0.035203 0.153143 0.378180 0.087552 0.005003 0.894586 0.012858 0.004459 0.038951 0.001109 0.955481 0.924470 0.068560 0.001165 0.005805 0.920483 0.070039 0.001674 0.007805 0.988335 0.001902 0.003155 0.006608 0.001527 0.656726 0.002699 0.339047 0.987505 0.001810 0.004336 0.006349 0.719584 0.065184 0.050384 0.164848 0.535389 0.099997 0.102849 0.261764 0.245215 0.272017 0.301499 0.181269 0.306107 0.209040 0.248687 0.236166 0.223744 0.278668 0.251931 0.245657 Consensus sequence: HHWAWGTAAAYAAAVDB Reverse complement motif 0.223744 0.251931 0.278668 0.245657 0.236166 0.209040 0.248687 0.306107 0.245215 0.301499 0.272017 0.181269 0.261764 0.099997 0.102849 0.535389 0.164848 0.065184 0.050384 0.719584 0.006349 0.001810 0.004336 0.987505 0.001527 0.002699 0.656726 0.339047 0.006608 0.001902 0.003155 0.988335 0.007805 0.070039 0.001674 0.920483 0.005805 0.068560 0.001165 0.924470 0.955481 0.038951 0.001109 0.004459 0.087552 0.894586 0.005003 0.012858 0.378180 0.035203 0.153143 0.433474 0.205460 0.079002 0.107142 0.608396 0.366532 0.128602 0.091890 0.412976 0.233038 0.179625 0.175701 0.411635 0.330494 0.205062 0.128957 0.335487 Consensus sequence: BDVTTTKTTTACWTWHH Alignment: HHWAWGTAAAYAAAVDB ---DBGTAAATAHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00039 Foxj3_primary Original Motif Original Motif Forward 4 11 0.004905 Species: Mus musculus Original motif 0.273456 0.257473 0.208488 0.260583 0.338566 0.133379 0.306363 0.221693 0.475488 0.192852 0.156858 0.174803 0.506619 0.132646 0.170373 0.190362 0.349042 0.127275 0.325924 0.197759 0.303850 0.013619 0.678034 0.004497 0.014136 0.015691 0.003073 0.967100 0.913373 0.082928 0.001910 0.001789 0.956294 0.017745 0.000584 0.025378 0.987796 0.001685 0.004159 0.006360 0.002288 0.814764 0.001427 0.181521 0.986707 0.002688 0.003346 0.007259 0.787378 0.065481 0.057961 0.089180 0.572982 0.089910 0.066184 0.270924 0.224167 0.339979 0.258886 0.176968 0.268414 0.272007 0.239541 0.220038 0.241771 0.394748 0.174273 0.189208 Consensus sequence: HDHADGTAAACAAAVVH Reverse complement motif 0.241771 0.174273 0.394748 0.189208 0.268414 0.239541 0.272007 0.220038 0.224167 0.258886 0.339979 0.176968 0.270924 0.089910 0.066184 0.572982 0.089180 0.065481 0.057961 0.787378 0.007259 0.002688 0.003346 0.986707 0.002288 0.001427 0.814764 0.181521 0.006360 0.001685 0.004159 0.987796 0.025378 0.017745 0.000584 0.956294 0.001789 0.082928 0.001910 0.913373 0.967100 0.015691 0.003073 0.014136 0.303850 0.678034 0.013619 0.004497 0.197759 0.127275 0.325924 0.349042 0.190362 0.132646 0.170373 0.506619 0.174803 0.192852 0.156858 0.475488 0.221693 0.133379 0.306363 0.338566 0.260583 0.257473 0.208488 0.273456 Consensus sequence: DVVTTTGTTTACDTHDH Alignment: HDHADGTAAACAAAVVH ---DBGTAAATAHD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00041 Foxj1_primary Original Motif Original Motif Backward 5 11 0.006565 Species: Mus musculus Original motif 0.446042 0.209997 0.124191 0.219770 0.271534 0.218131 0.245258 0.265077 0.368646 0.184693 0.168482 0.278180 0.348384 0.034204 0.583335 0.034077 0.040365 0.085618 0.013162 0.860855 0.824790 0.156631 0.004063 0.014515 0.835134 0.069381 0.003505 0.091980 0.967572 0.009280 0.006259 0.016890 0.009507 0.909577 0.004492 0.076424 0.947956 0.006994 0.008177 0.036873 0.599204 0.170666 0.065622 0.164508 0.708795 0.035865 0.070557 0.184782 0.303191 0.287145 0.184748 0.224917 0.285550 0.184167 0.248662 0.281621 0.235315 0.210836 0.254428 0.299421 0.220038 0.158539 0.286552 0.334871 Consensus sequence: HDHRTAAACAAAHDDD Reverse complement motif 0.334871 0.158539 0.286552 0.220038 0.299421 0.210836 0.254428 0.235315 0.281621 0.184167 0.248662 0.285550 0.224917 0.287145 0.184748 0.303191 0.184782 0.035865 0.070557 0.708795 0.164508 0.170666 0.065622 0.599204 0.036873 0.006994 0.008177 0.947956 0.009507 0.004492 0.909577 0.076424 0.016890 0.009280 0.006259 0.967572 0.091980 0.069381 0.003505 0.835134 0.014515 0.156631 0.004063 0.824790 0.860855 0.085618 0.013162 0.040365 0.348384 0.583335 0.034204 0.034077 0.278180 0.184693 0.168482 0.368646 0.265077 0.218131 0.245258 0.271534 0.219770 0.209997 0.124191 0.446042 Consensus sequence: DDDHTTTGTTTAMHDH Alignment: HDHRTAAACAAAHDDD -DBGTAAATAHD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00182 Hoxa6 Original Motif Reverse Complement Forward 4 11 0.008635 Species: Mus musculus Original motif 0.583501 0.146680 0.197544 0.072276 0.427857 0.353560 0.089642 0.128941 0.195697 0.096442 0.593720 0.114140 0.189276 0.048267 0.483269 0.279188 0.005990 0.090620 0.000813 0.902576 0.949399 0.035300 0.001844 0.013457 0.984085 0.006313 0.001863 0.007739 0.007739 0.001863 0.006313 0.984085 0.013457 0.001844 0.035300 0.949399 0.902576 0.000813 0.090620 0.005990 0.152255 0.677055 0.087732 0.082958 0.114140 0.593720 0.096442 0.195697 0.234649 0.271494 0.063511 0.430347 0.334155 0.324603 0.120490 0.220751 0.602114 0.075922 0.081032 0.240932 0.219592 0.167291 0.277257 0.335860 Consensus sequence: AMGKTAATTACCHHAD Reverse complement motif 0.335860 0.167291 0.277257 0.219592 0.240932 0.075922 0.081032 0.602114 0.220751 0.324603 0.120490 0.334155 0.430347 0.271494 0.063511 0.234649 0.114140 0.096442 0.593720 0.195697 0.152255 0.087732 0.677055 0.082958 0.005990 0.000813 0.090620 0.902576 0.949399 0.001844 0.035300 0.013457 0.984085 0.001863 0.006313 0.007739 0.007739 0.006313 0.001863 0.984085 0.013457 0.035300 0.001844 0.949399 0.902576 0.090620 0.000813 0.005990 0.189276 0.483269 0.048267 0.279188 0.195697 0.593720 0.096442 0.114140 0.128941 0.353560 0.089642 0.427857 0.072276 0.146680 0.197544 0.583501 Consensus sequence: DTHHGGTAATTAYCYT Alignment: DTHHGGTAATTAYCYT ---DBGTAAATAHD-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00260 Hoxc6 Reverse Complement Original Motif Forward 4 11 0.009216 Species: Mus musculus Original motif 0.141005 0.449493 0.156825 0.252678 0.455858 0.113781 0.308929 0.121431 0.477197 0.168033 0.129172 0.225598 0.426456 0.217567 0.282209 0.073769 0.102862 0.036664 0.396710 0.463765 0.028507 0.088270 0.006651 0.876572 0.913819 0.022439 0.008521 0.055221 0.960448 0.005999 0.014099 0.019454 0.019454 0.014099 0.005999 0.960448 0.055221 0.008521 0.022439 0.913819 0.876572 0.006651 0.088270 0.028507 0.463765 0.396710 0.036664 0.102862 0.118434 0.218634 0.240530 0.422402 0.383597 0.094339 0.159853 0.362211 0.460387 0.156122 0.231061 0.152430 0.319517 0.271629 0.212544 0.196309 0.316985 0.182398 0.232158 0.268459 Consensus sequence: BRHVKTAATTAMBDVVD Reverse complement motif 0.268459 0.182398 0.232158 0.316985 0.196309 0.271629 0.212544 0.319517 0.152430 0.156122 0.231061 0.460387 0.362211 0.094339 0.159853 0.383597 0.422402 0.218634 0.240530 0.118434 0.102862 0.396710 0.036664 0.463765 0.028507 0.006651 0.088270 0.876572 0.913819 0.008521 0.022439 0.055221 0.960448 0.014099 0.005999 0.019454 0.019454 0.005999 0.014099 0.960448 0.055221 0.022439 0.008521 0.913819 0.876572 0.088270 0.006651 0.028507 0.463765 0.036664 0.396710 0.102862 0.073769 0.217567 0.282209 0.426456 0.225598 0.168033 0.129172 0.477197 0.121431 0.113781 0.308929 0.455858 0.141005 0.156825 0.449493 0.252678 Consensus sequence: DBBDVYTAATTARBHKB Alignment: BRHVKTAATTAMBDVVD ---DHTATTTACBD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00164 Hoxa7_2668.2 Reverse Complement Original Motif Forward 4 11 0.009422 Species: Mus musculus Original motif 0.186841 0.449539 0.249722 0.113898 0.223463 0.205831 0.481456 0.089250 0.367581 0.359936 0.125934 0.146549 0.261677 0.203240 0.296601 0.238482 0.152252 0.103805 0.244337 0.499606 0.067094 0.105584 0.004743 0.822578 0.904338 0.035364 0.006595 0.053703 0.942269 0.004131 0.010982 0.042617 0.042617 0.010982 0.004131 0.942269 0.053703 0.006595 0.035364 0.904338 0.822578 0.004743 0.105584 0.067094 0.499606 0.244337 0.103805 0.152252 0.137299 0.191697 0.130352 0.540652 0.342117 0.164229 0.220781 0.272873 0.361122 0.190681 0.205495 0.242702 0.205884 0.237554 0.305285 0.251277 0.187149 0.554889 0.118916 0.139046 Consensus sequence: VVHDDTAATTAHTDDBC Reverse complement motif 0.187149 0.118916 0.554889 0.139046 0.205884 0.305285 0.237554 0.251277 0.242702 0.190681 0.205495 0.361122 0.272873 0.164229 0.220781 0.342117 0.540652 0.191697 0.130352 0.137299 0.152252 0.244337 0.103805 0.499606 0.067094 0.004743 0.105584 0.822578 0.904338 0.006595 0.035364 0.053703 0.942269 0.010982 0.004131 0.042617 0.042617 0.004131 0.010982 0.942269 0.053703 0.035364 0.006595 0.904338 0.822578 0.105584 0.004743 0.067094 0.499606 0.103805 0.244337 0.152252 0.261677 0.296601 0.203240 0.238482 0.146549 0.359936 0.125934 0.367581 0.223463 0.481456 0.205831 0.089250 0.186841 0.249722 0.449539 0.113898 Consensus sequence: GBDDAHTAATTADHHVV Alignment: VVHDDTAATTAHTDDBC ---DHTATTTACBD--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00259 Hoxb6 Original Motif Reverse Complement Forward 2 11 0.009490 Species: Mus musculus Original motif 0.285750 0.141861 0.055341 0.517047 0.548840 0.096589 0.075248 0.279324 0.181874 0.041138 0.180661 0.596326 0.176788 0.096024 0.346904 0.380283 0.171188 0.295681 0.330641 0.202489 0.074696 0.111978 0.671994 0.141332 0.022223 0.197771 0.015214 0.764793 0.833470 0.118870 0.018756 0.028904 0.953513 0.012047 0.011588 0.022853 0.022853 0.011588 0.012047 0.953513 0.028904 0.018756 0.118870 0.833470 0.764793 0.015214 0.197771 0.022223 0.112355 0.737510 0.058135 0.092001 0.202489 0.330641 0.295681 0.171188 0.257218 0.134472 0.290939 0.317371 0.178633 0.246536 0.240081 0.334751 Consensus sequence: WWTDBGTAATTACVDB Reverse complement motif 0.334751 0.246536 0.240081 0.178633 0.317371 0.134472 0.290939 0.257218 0.202489 0.295681 0.330641 0.171188 0.112355 0.058135 0.737510 0.092001 0.022223 0.015214 0.197771 0.764793 0.833470 0.018756 0.118870 0.028904 0.953513 0.011588 0.012047 0.022853 0.022853 0.012047 0.011588 0.953513 0.028904 0.118870 0.018756 0.833470 0.764793 0.197771 0.015214 0.022223 0.074696 0.671994 0.111978 0.141332 0.171188 0.330641 0.295681 0.202489 0.380283 0.096024 0.346904 0.176788 0.596326 0.041138 0.180661 0.181874 0.279324 0.096589 0.075248 0.548840 0.517047 0.141861 0.055341 0.285750 Consensus sequence: VDVGTAATTACBDAWW Alignment: VDVGTAATTACBDAWW -DBGTAAATAHD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00254 Pou2f1 Original Motif Reverse Complement Forward 2 11 0.009985 Species: Mus musculus Original motif 0.308369 0.139885 0.281073 0.270674 0.168666 0.207185 0.128791 0.495358 0.308131 0.118740 0.312745 0.260385 0.304233 0.242793 0.085023 0.367951 0.450966 0.095745 0.310736 0.142553 0.320953 0.240495 0.019064 0.419488 0.038986 0.008174 0.004507 0.948333 0.890516 0.093706 0.008403 0.007375 0.977877 0.003033 0.002679 0.016411 0.010958 0.001638 0.004794 0.982610 0.017772 0.021021 0.102898 0.858308 0.928395 0.009777 0.004216 0.057612 0.490420 0.046638 0.316162 0.146780 0.107111 0.169218 0.438102 0.285569 0.208918 0.175267 0.073106 0.542709 0.511195 0.052882 0.117968 0.317954 Consensus sequence: DHDHRHTAATTARBTW Reverse complement motif 0.317954 0.052882 0.117968 0.511195 0.542709 0.175267 0.073106 0.208918 0.107111 0.438102 0.169218 0.285569 0.146780 0.046638 0.316162 0.490420 0.057612 0.009777 0.004216 0.928395 0.858308 0.021021 0.102898 0.017772 0.982610 0.001638 0.004794 0.010958 0.016411 0.003033 0.002679 0.977877 0.007375 0.093706 0.008403 0.890516 0.948333 0.008174 0.004507 0.038986 0.419488 0.240495 0.019064 0.320953 0.142553 0.095745 0.310736 0.450966 0.367951 0.242793 0.085023 0.304233 0.308131 0.312745 0.118740 0.260385 0.495358 0.207185 0.128791 0.168666 0.270674 0.139885 0.281073 0.308369 Consensus sequence: WABKTAATTAHKHHHD Alignment: WABKTAATTAHKHHHD -DBGTAAATAHD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif ID Motif name Matching format of first motif Matching format of second motif Direction Position # # of overlap Similarity score UP00110 Dlx4 Original Motif Reverse Complement Forward 3 11 0.010746 Species: Mus musculus Original motif 0.148890 0.250744 0.298395 0.301970 0.196587 0.552942 0.118457 0.132014 0.300532 0.225189 0.321815 0.152464 0.220403 0.484478 0.170471 0.124648 0.282659 0.126893 0.291900 0.298548 0.543480 0.066796 0.238211 0.151513 0.008757 0.043674 0.001328 0.946241 0.965904 0.003560 0.005827 0.024709 0.991903 0.001679 0.003111 0.003308 0.005813 0.003047 0.002398 0.988742 0.009065 0.005398 0.012094 0.973444 0.760080 0.001219 0.230062 0.008640 0.196565 0.523905 0.138530 0.141000 0.291872 0.485094 0.060293 0.162741 0.173083 0.264513 0.398406 0.163998 0.496161 0.139574 0.111645 0.252620 0.216899 0.530982 0.122796 0.129323 Consensus sequence: BCVVDATAATTACMVHC Reverse complement motif 0.216899 0.122796 0.530982 0.129323 0.252620 0.139574 0.111645 0.496161 0.173083 0.398406 0.264513 0.163998 0.291872 0.060293 0.485094 0.162741 0.196565 0.138530 0.523905 0.141000 0.008640 0.001219 0.230062 0.760080 0.973444 0.005398 0.012094 0.009065 0.988742 0.003047 0.002398 0.005813 0.003308 0.001679 0.003111 0.991903 0.024709 0.003560 0.005827 0.965904 0.946241 0.043674 0.001328 0.008757 0.151513 0.066796 0.238211 0.543480 0.298548 0.126893 0.291900 0.282659 0.220403 0.170471 0.484478 0.124648 0.300532 0.321815 0.225189 0.152464 0.196587 0.118457 0.552942 0.132014 0.301970 0.250744 0.298395 0.148890 Consensus sequence: GHVRGTAATTATDVVGV Alignment: GHVRGTAATTATDVVGV --DBGTAAATAHD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-18-2018 12:10:47 Runtime: 594.209077 seconds MOTIFSIM is written by Ngoc Tam L. Tran