**************************************************************************************************************************************************************************************************** MOTIFSIM - Motif Similarity Detection Tool Version 2.2 **************************************************************************************************************************************************************************************************** INPUT **************************************************************************************************************************************************************************************************** Input Parameters Number of files: 4 Number of top significant motifs: 10 Number of best matches: 10 Similarity cutoff: >= 0.75 Matching motif database: UniProbe Mus Musculus Motif tree: Yes Combined similar motifs: Yes Output file type: All Output file format: All Input files and motif counts File name Count of motifs Dataset # DREME_DM721.txt 16 1 MEME-ChIP_DM721.txt 11 2 PScanChIP_DM721.txt 37 3 RSAT_peak-motifs_DM721.txt 40 4 **************************************************************************************************************************************************************************************************** RESULTS **************************************************************************************************************************************************************************************************** ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 30 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ZEB1 RORA_1 Original Motif Reverse Complement CACCTD TGACCTDVWT VWTSACCTDT Direction: Backward Position #: 4 Overlap #: 6 Alignment: -CACCTD--- TGACCTDVWT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif REST Original Motif Original Motif VWTSACCTDT TTCAGCACCATGGACAGCKCC TTSAKSACCWDKGACAGCKCC Direction: Forward Position #: 3 Overlap #: 10 Alignment: --VWTSACCTDT--------- TTCAGCACCATGGACAGCKCC ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Original Motif Original Motif TTSAKSACCWDKGACAGCKCC HBCCMCACCHH BBCMVCACCHHKGACAGCKCC Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTSAKSACCWDKGACAGCKCC HBCCMCACCHH---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif rrAGGGGGArr Original Motif Reverse Complement BBCMVCACCHHKGACAGCKCC VVTCCCCCTVV HHYCCCMCYHHKGACAGCKCC Direction: Forward Position #: 1 Overlap #: 11 Alignment: BBCMVCACCHHKGACAGCKCC VVTCCCCCTVV---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Arnt Combined Motif Reverse Complement Original Motif GGYGCTGTCRDDMGRGGGMDD CACGTG GGYGCTGTCRVACGTGGGMDD Direction: Forward Position #: 11 Overlap #: 6 Alignment: GGYGCTGTCRDDMGRGGGMDD ----------CACGTG----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Esrrb Combined Motif Reverse Complement Original Motif HHYCCCACGTVKGACAGCKCC CACGTG HHYCMCGYGTVKGACAGCKCC Direction: Forward Position #: 4 Overlap #: 6 Alignment: HHYCCCACGTVKGACAGCKCC ---CACGTG------------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 73 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGsCTCss ssCGsCwsCss Reverse Complement Reverse Complement BBGAGSCGVV BBGSWGSCGBB BBGGAGSCGVB Direction: Forward Position #: 2 Overlap #: 10 Alignment: -BBGAGSCGVV BBGSWGSCGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- sssCGssGCsss Combined Motif Original Motif Original Motif BBGGAGSCGVB SSSCGSSGCSSS BBGSMGSCGCSSS Direction: Forward Position #: 2 Overlap #: 10 Alignment: BBGGAGSCGVB-- -SSSCGSSGCSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGCksCGss Reverse Complement Original Motif SSSGCGSCRSCBB VVCGCKSCGBB SVCGCGSCGSSBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: SSSGCGSCRSCBB VVCGCKSCGBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGGsYCGss Original Motif Reverse Complement SVCGCGSCGSSBB VSCGGSCCGSB VSCGSSCCGSSBB Direction: Forward Position #: 1 Overlap #: 11 Alignment: SVCGCGSCGSSBB VSCGGSCCGSB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Reverse Complement Original Motif BBSSCGGSSCGSV SSCGCCSCCGCCCSS BBSSCGSCSCSVCCCSS Direction: Forward Position #: 3 Overlap #: 11 Alignment: BBSSCGGSSCGSV---- --SSCGCCSCCGCCCSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGssCGss Reverse Complement Reverse Complement SSGGGVSGSGSCGSSBB VSCGSSCGSB BSSGSSCGSGSCGSSBB Direction: Forward Position #: 1 Overlap #: 10 Alignment: SSGGGVSGSGSCGSSBB VSCGSSCGSB------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCGrGCGss Original Motif Original Motif BSSGSSCGSGSCGSSBB VSCGRGCGBV VSCGGSCGSSSCGSSBB Direction: Forward Position #: 1 Overlap #: 10 Alignment: BSSGSSCGSGSCGSSBB VSCGRGCGBV------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssGMsGRGCGss Combined Motif Original Motif Original Motif VSCGGSCGSSSCGSSBB VVGCSGGGCGBB VSCGVGCGGGGCGBBBB Direction: Forward Position #: 4 Overlap #: 12 Alignment: VSCGGSCGSSSCGSSBB ---VVGCSGGGCGBB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCKCwsCGss Combined Motif Reverse Complement Original Motif BBBBCGCCCCGCVCGSV BVCGCWSCGBV BBBBCGCHSCGCVCGSV Direction: Forward Position #: 3 Overlap #: 11 Alignment: BBBBCGCCCCGCVCGSV --BVCGCWSCGBV---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ssCrCYyYCGss Reverse Complement Reverse Complement VSCGVGCGSHGCGBBBB BBCGGKGGMGBB BSCGGGSGSGGCGBBBB Direction: Forward Position #: 1 Overlap #: 12 Alignment: VSCGVGCGSHGCGBBBB BBCGGKGGMGBB----- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 68 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- dwCTTTTCwy wyATTTTAww Reverse Complement Reverse Complement DHGAAAAGHD DDTAAAATHD DHKAAAAKHD Direction: Backward Position #: 1 Overlap #: 10 Alignment: DHGAAAAGHD DDTAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAwAAww Original Motif Original Motif DHKAAAAKHD DDTAAWAAHH DHTAAAADHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHKAAAAKHD DDTAAWAAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif DHTAAAADHD WWAAAAAAWH DWWAAAAAHH Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHTAAAADHD WWAAAAAAWH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Reverse Complement Reverse Complement HHTTTTTWWD HHTWTTTADD HHTTTTTADD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHTTTTTWWD HHTWTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Reverse Complement Reverse Complement DDTAAAAAHH DDTAAAAATHD DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAAHH- DDTAAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 18 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 18 Motif 2 Original Motif Original Motif AMACA CACACACA AMACACAC Direction: Backward Position #: 1 Overlap #: 5 Alignment: ---AMACA CACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Original Motif AMACACAC CACACACACACA CACACACACACA Direction: Forward Position #: 2 Overlap #: 8 Alignment: -AMACACAC--- CACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Reverse Complement Reverse Complement TGTGTGTGTGTG TGTGTGTGTGTKTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGTG-- TGTGTGTGTGTKTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement TGTGTGTGTGTGTG TGTGTGTGTGTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 12 Alignment: TGTGTGTGTGTGTG TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 25 Original Motif Reverse Complement TGTGTGTGTGTGTG TGTGTGKVTGTGTG TGTGTGTGTGTGTG Direction: Forward Position #: 1 Overlap #: 14 Alignment: TGTGTGTGTGTGTG TGTGTGKVTGTGTG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- aaACAAAACaa Combined Motif Original Motif Reverse Complement TGTGTGTGTGTGTG TTGTTTTGTTT TGTGTGTBKKTKTGTTT Direction: Forward Position #: 7 Overlap #: 8 Alignment: TGTGTGTGTGTGTG--- ------TTGTTTTGTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Reverse Complement Original Motif AAACARARYBACACACA HHCAAAAACAH AAMMAAAACHACACACA Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAACARARYBACACACA HHCAAAAACAH------ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ryayAyAyrtGTRTrTry Reverse Complement Original Motif TGTGTGTHGTTTTYRTT DHAYAYAYRTGTGTRTDH DHAYAYAYRTGTGTGTDKTTTTYRTT Direction: Forward Position #: 10 Overlap #: 9 Alignment: ---------TGTGTGTHGTTTTYRTT DHAYAYAYRTGTGTRTDH-------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wrTGTATACAyw Original Motif Original Motif DHAYAYAYRTGTGTGTDKTTTTYRTT HDTGTATACAHD HDTRTAYACATDTGTGTDKTTTTYRTT Direction: Forward Position #: 2 Overlap #: 11 Alignment: -DHAYAYAYRTGTGTGTDKTTTTYRTT HDTGTATACAHD--------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 5 Reverse Complement Original Motif AAMMAAAAYDACACAHATGTMTAMADH AAAASAAA AAAAMAAAYDACACAHATGTMTAMADH Direction: Forward Position #: 1 Overlap #: 8 Alignment: AAMMAAAAYDACACAHATGTMTAMADH AAAASAAA------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 71 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wyATTTTAww wtATTTTTAww Original Motif Original Motif DHATTTTADD DHATTTTTADD DHATTTTWADD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHATTTTADD- DHATTTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAwAAww Reverse Complement Original Motif DDTWAAAATHD DDTAAWAAHH DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTWAAAATHD DDTAAWAAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Original Motif Original Motif DDTAAAAATHD DDTAAAWAHH DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAATHD DDTAAAWAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif DDTAAAAATHD WWAAAAAAWH DWWAAAAAWHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAATHD WWAAAAAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dwCTTTTCwy Reverse Complement Original Motif DHWTTTTTWWD DHCTTTTCHH DHCTTTTYWHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHWTTTTTWWD DHCTTTTCHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Reverse Complement Original Motif DHWKAAAAGHD HHTTTWAAADD DHTTWAAAAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHWKAAAAGHD HHTTTWAAADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Reverse Complement Reverse Complement DHTTTTWAAHD DBTATGTAHH DHTWTKTAHHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHTTTTWAAHD DBTATGTAHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Original Motif Reverse Complement DHTWTKTAHHD HTGTTTTTGHH HHKTTTTWGHH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHTWTKTAHHD HTGTTTTTGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Reverse Complement Original Motif HHCWAAAAYHH AAACAAAACAA HHAMAAAACHH Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHCWAAAAYHH AAACAAAACAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Reverse Complement HHGTTTTRTHH TTTTTTTTTTT TTKTTTTTTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHGTTTTRTHH TTTTTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 76 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwWAAAAAwa wtATTTTTAww Reverse Complement Original Motif HWTTTTTTWW DHATTTTTADD HATTTTTWWDD Direction: Backward Position #: 1 Overlap #: 10 Alignment: -HWTTTTTTWW DHATTTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAwAAww Original Motif Reverse Complement HATTTTTWWDD HHTTWTTADD HATTTTTADDD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HATTTTTWWDD HHTTWTTADD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAAAwAww Original Motif Reverse Complement HATTTTTADDD HHTWTTTADD HHTTTTTADDD Direction: Forward Position #: 1 Overlap #: 10 Alignment: HATTTTTADDD HHTWTTTADD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Original Motif DDDTAAAAAHH AAAAAAAAAAA AAAWAAAAAWA Direction: Forward Position #: 1 Overlap #: 11 Alignment: DDDTAAAAAHH AAAAAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Reverse Complement Reverse Complement TWTTTTTWTTT HTGTTTTTGHH TTKTTTTTKTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: TWTTTTTWTTT HTGTTTTTGHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wyATTTTAww Original Motif Original Motif TTKTTTTTKTT DHATTTTADD DHDTTTTWDDT Direction: Forward Position #: 1 Overlap #: 10 Alignment: TTKTTTTTKTT DHATTTTADD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaACAAAACaa Original Motif Reverse Complement DHDTTTTWDDT TTGTTTTGTTT HHGTTTTRTTT Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHDTTTTWDDT TTGTTTTGTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Reverse Complement Original Motif AAAMAAAACHH HHTTTWAAADD HHWTWAAAAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: AAAMAAAACHH HHTTTWAAADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dwCTTTTCwy Reverse Complement Original Motif DHTTTTWAWHH DHCTTTTCHH DHCTTTTCHHH Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHTTTTWAWHH DHCTTTTCHH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Original Motif Original Motif DHCTTTTCHHH TKKTTTGTTTTTTT DTBTTTTVWTTTTTT Direction: Forward Position #: 2 Overlap #: 10 Alignment: DHCTTTTCHHH---- -TKKTTTGTTTTTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 83 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwTAAAwAww wwTAAwAAww Original Motif Original Motif DDTAAAWAHH DDTAAWAAHH DDTAAAAAHH Direction: Backward Position #: 1 Overlap #: 10 Alignment: DDTAAAWAHH DDTAAWAAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Reverse Complement DDTAAAAAHH DDTAAAAATHD DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAAHH- DDTAAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif DDTAAAAATHD WWAAAAAAWH DWWAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAATHD WWAAAAAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Original Motif Original Motif DWWAAAAATHD HHTACATAVD DHTAMAWAHHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DWWAAAAATHD HHTACATAVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wyATTTTAww Original Motif Reverse Complement DHTAMAWAHHD DDTAAAATHD DHTAAAAWHDD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHTAMAWAHHD DDTAAAATHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Original Motif Original Motif DHTAAAAWHDD HHCAAAAACAH HHYAAAAACHH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHTAAAAWHDD HHCAAAAACAH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Original Motif Original Motif HHYAAAAACHH HHTTTWAAADD HHTWWAAAMHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHYAAAAACHH HHTTTWAAADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAATTAATTAww Original Motif Reverse Complement HHTWWAAAMHD DHTAATTAATTADH HHTAAWWAATTADH Direction: Forward Position #: 1 Overlap #: 11 Alignment: HHTWWAAAMHD--- DHTAATTAATTADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dwCTTTTCwy Original Motif Reverse Complement HHTAAWWAATTADH DHGAAAAGHD DHKAAAARADTADH Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHTAAWWAATTADH DHGAAAAGHD---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Original Motif Original Motif DHKAAAARADTADH AAAAAAAAAAA DARAAAAAAWWADH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHKAAAARADTADH AAAAAAAAAAA--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 81 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- wwTAAwAAww wwTAAAwAww Original Motif Original Motif DDTAAWAAHH DDTAAAWAHH DDTAAAAAHH Direction: Backward Position #: 1 Overlap #: 10 Alignment: DDTAAWAAHH DDTAAAWAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Reverse Complement DDTAAAAAHH DDTAAAAATHD DDTAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAAHH- DDTAAAAATHD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwWAAAAAwa Original Motif Original Motif DDTAAAAATHD WWAAAAAAWH DWWAAAAATHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DDTAAAAATHD WWAAAAAAWH- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wyATTTTAww Original Motif Reverse Complement DWWAAAAATHD DDTAAAATHD DDTAAAAWHHD Direction: Forward Position #: 1 Overlap #: 10 Alignment: DWWAAAAATHD DDTAAAATHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtTTWwAAAaw Reverse Complement Reverse Complement DHHWTTTTADD DDTTTWAAAHH DDTTTTWWAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHHWTTTTADD DDTTTWAAAHH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif aaCAAAAACaa Reverse Complement Original Motif DHTWWAAAADD HHCAAAAACAH HHYAAAAAMHH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHTWWAAAADD HHCAAAAACAH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif dwCTTTTCwy Original Motif Reverse Complement HHYAAAAAMHH DHGAAAAGHD DHBAAAARHDH Direction: Forward Position #: 1 Overlap #: 10 Alignment: HHYAAAAAMHH DHGAAAAGHD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif twTACATAvw Original Motif Original Motif DHBAAAARHDH HHTACATAVD DHTAMAWAHDH Direction: Forward Position #: 1 Overlap #: 10 Alignment: DHBAAAARHDH HHTACATAVD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wwTAATTAATTAww Original Motif Reverse Complement DHTAMAWAHDH DHTAATTAATTADH DHTAAWTAATTADH Direction: Forward Position #: 1 Overlap #: 11 Alignment: DHTAMAWAHDH--- DHTAATTAATTADH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Reverse Complement HDTAATTAWTTAHD TTTTTTTTTTT TTTTTTTWTTTAHD Direction: Forward Position #: 1 Overlap #: 11 Alignment: HDTAATTAWTTAHD TTTTTTTTTTT--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 90 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGsCwsCss ssCrCYyYCGss Original Motif Original Motif BBCGSCWSCBB BBCRCCYCCGBB BBBCGCCHSCGB Direction: Backward Position #: 2 Overlap #: 11 Alignment: BBCGSCWSCBB- BBCRCCYCCGBB ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif ccCCmCACCcc Reverse Complement Reverse Complement BCGSHGGCGBBB DDGGTGRGGBD BBGGTGGSGBVB Direction: Forward Position #: 1 Overlap #: 11 Alignment: BCGSHGGCGBBB DDGGTGRGGBD- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif sssCGssGCsss Original Motif Reverse Complement BBGGTGGSGBVB SSSGCSSCGSSS BBGGYGGCGSVB Direction: Forward Position #: 1 Overlap #: 12 Alignment: BBGGTGGSGBVB SSSGCSSCGSSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ssCGCCsCCrCCCss Combined Motif Original Motif Reverse Complement BBGGYGGCGSVB SSGGGCGGSGGCGSS BBGGBGGCGGSGGCGSS Direction: Forward Position #: 3 Overlap #: 10 Alignment: BBGGYGGCGSVB----- --SSGGGCGGSGGCGSS ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ******************************************************* Combined Motifs for Top Global and Local Significant Motif ID 86 and Its Best Matches ****************************************************** ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1st motif name 2nd motif name 1st format 2nd format 1st motif 2nd motif Combined motif ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- aaCAAAAACaa aaACAAAACaa Reverse Complement Reverse Complement HTGTTTTTGHH TTGTTTTGTTT TTGTTTTKKTT Direction: Backward Position #: 1 Overlap #: 11 Alignment: HTGTTTTTGHH TTGTTTTGTTT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif wtATTTTTAww Original Motif Original Motif TTGTTTTKKTT DHATTTTTADD HHRTTTTTRDH Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTGTTTTKKTT DHATTTTTADD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif AAAAAAAAAAA Reverse Complement Original Motif HDKAAAAAKHH AAAAAAAAAAA AAAAAAAADAA Direction: Forward Position #: 1 Overlap #: 11 Alignment: HDKAAAAAKHH AAAAAAAAAAA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif yayAyAyACATrya Reverse Complement Reverse Complement TTDTTTTTTTT DHKATGTKTKTGTD THKWTKTTTKTGTD Direction: Forward Position #: 1 Overlap #: 11 Alignment: TTDTTTTTTTT--- DHKATGTKTKTGTD ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement THKWTKTTTKTGTD TGTGTGTGTGTG TBTKTGTKTGTGTD Direction: Forward Position #: 1 Overlap #: 12 Alignment: THKWTKTTTKTGTD TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif tyTCTkTkTCyy Original Motif Original Motif TBTKTGTKTGTGTD BBTCTKTKTCHB TBTCTKTKTSTBTD Direction: Forward Position #: 1 Overlap #: 12 Alignment: TBTKTGTKTGTGTD BBTCTKTKTCHB-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif CACACACACACA Original Motif Reverse Complement TBTCTKTKTSTBTD TGTGTGTGTGTG TGTSTGTGTGTGTD Direction: Forward Position #: 1 Overlap #: 12 Alignment: TBTCTKTKTSTBTD TGTGTGTGTGTG-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Combined Motif Motif 27 Reverse Complement Original Motif HACACACACASACA CAYACACACACACA CACACACACACACA Direction: Forward Position #: 1 Overlap #: 14 Alignment: HACACACACASACA CAYACACACACACA ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RREB1 Combined Motif Reverse Complement Reverse Complement TGTGTGTGTGTGTG BGRRRGRGGRTGRTTYGGGG TGTGKGTGKGKGTGRTTYGGGG Direction: Forward Position #: 3 Overlap #: 12 Alignment: TGTGTGTGTGTGTG-------- --BGRRRGRGGRTGRTTYGGGG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Motif 26 Combined Motif Original Motif Original Motif TGTGKGTGKGKGTGRTTYGGGG TKKTTTGTTTTTTT TGTGTKTKTKKDTKKTTTGGGG Direction: Forward Position #: 5 Overlap #: 14 Alignment: TGTGKGTGKGKGTGRTTYGGGG ----TKKTTTGTTTTTTT---- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Results created by MOTIFSIM on 06-18-2018 15:30:26 Runtime: 835.059 seconds MOTIFSIM is written by Ngoc Tam L. 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